BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011137
         (493 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|224133408|ref|XP_002321560.1| predicted protein [Populus trichocarpa]
 gi|222868556|gb|EEF05687.1| predicted protein [Populus trichocarpa]
          Length = 491

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/455 (76%), Positives = 402/455 (88%)

Query: 39  DPAALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPT 98
           + AALA+LILTS++P+ L QTLH P++ WTPQLV+ I+KRLWN   KAL FFN+LS+HP+
Sbjct: 37  EAAALATLILTSSNPQALAQTLHSPTIQWTPQLVNTILKRLWNDGPKALQFFNLLSHHPS 96

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           Y+H PSS+DHAID++ARLRD  ++ +LV+RM+S  LGPT KTFAIIAERY SAGK  RAV
Sbjct: 97  YSHHPSSYDHAIDISARLRDSPSLRSLVYRMRSARLGPTPKTFAIIAERYASAGKPHRAV 156

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWC 218
           K+FLSMH+ GC Q L SFNTILD+LCK K+VE AYNLFKVF+GKF+AD +SYNV+ NGWC
Sbjct: 157 KVFLSMHQFGCFQDLQSFNTILDVLCKSKRVEMAYNLFKVFKGKFRADCVSYNVMVNGWC 216

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
           L+KRTNKALE+LKEMV RGL PNLT+YN +LKGYFRAGQI EAW FFLEMKKR CEIDV+
Sbjct: 217 LIKRTNKALEMLKEMVKRGLTPNLTSYNTMLKGYFRAGQINEAWDFFLEMKKRDCEIDVI 276

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TYTT++HGFGV GEIKRAR VFD MV  GVLPSVATYNA IQVLCKKD+V+NAI++FEEM
Sbjct: 277 TYTTVIHGFGVAGEIKRARKVFDTMVKKGVLPSVATYNAFIQVLCKKDNVDNAIVIFEEM 336

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
           V KGY+PNS TYN+VIRGLCH GEMERA+EF+GRMKDD CEPNVQTYN++IRYFCD GEI
Sbjct: 337 VVKGYVPNSITYNLVIRGLCHRGEMERAMEFMGRMKDDGCEPNVQTYNLVIRYFCDEGEI 396

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           ++ L+LF+KM SG CLPNLDTYNILIS+MFVRKKSDDLLVAG LLIEMVDRGF+PRKFTF
Sbjct: 397 DKALDLFQKMTSGDCLPNLDTYNILISAMFVRKKSDDLLVAGNLLIEMVDRGFVPRKFTF 456

Query: 459 NRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQFKL 493
           NRVLNGLLL GNQG AKEILRLQSRCGRL R+ KL
Sbjct: 457 NRVLNGLLLTGNQGFAKEILRLQSRCGRLTRKIKL 491


>gi|255540805|ref|XP_002511467.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550582|gb|EEF52069.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 482

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/468 (73%), Positives = 403/468 (86%), Gaps = 7/468 (1%)

Query: 26  TTTSPAPLPPAAADPAALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALK 85
           TTTSP    P A     LA+LIL ST+ +TL ++LH PS+ WTPQLV+ I+KRLWNH  K
Sbjct: 22  TTTSP----PEAT---TLAALILNSTNSQTLAESLHSPSIQWTPQLVNTILKRLWNHGPK 74

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           ALHFF ILS+HP+Y H  SSFDHAID+ ARLRD+RT+W LV RM+S  LGP+ +TFAIIA
Sbjct: 75  ALHFFKILSHHPSYCHQASSFDHAIDICARLRDFRTLWFLVSRMRSCRLGPSPRTFAIIA 134

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA 205
           ERY + GK  RAV +F+SMHE+GC Q L+SFNTILD+LCK K+VE AYNLFK  +GKFKA
Sbjct: 135 ERYAAMGKPHRAVTVFMSMHEYGCFQDLSSFNTILDVLCKSKRVEMAYNLFKALKGKFKA 194

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           D +SYN+I NGWCL+KRT KALE+LKEMV+RGL PNLTTYNI+L GYFRAGQ  EAW FF
Sbjct: 195 DCVSYNIIVNGWCLIKRTPKALEMLKEMVERGLTPNLTTYNIMLNGYFRAGQTNEAWGFF 254

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
           LEMKKRKC+IDVVTYT+++HG GVVGEIKRARNVF+ MV  GVLPSVAT+NA+IQ+LCKK
Sbjct: 255 LEMKKRKCDIDVVTYTSVIHGLGVVGEIKRARNVFNQMVKDGVLPSVATFNALIQILCKK 314

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
           DSVENAIL+FEEMV +GY+PNS TYN+VIRGLCH GEM+RA+E + RM+DD+CEPNVQTY
Sbjct: 315 DSVENAILIFEEMVKRGYVPNSITYNLVIRGLCHVGEMQRAMELMERMEDDDCEPNVQTY 374

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           NILIRYFCDAGEIE+GL+LF+KMG+G CLPNLDTYNILI+SMFVRK SD+LLVAGKLL+E
Sbjct: 375 NILIRYFCDAGEIEKGLDLFQKMGNGDCLPNLDTYNILINSMFVRKNSDNLLVAGKLLVE 434

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQFKL 493
           MVDRGF+PRK TFNRVL+GLLL GNQ  AKEIL LQ  CGRLPR+FKL
Sbjct: 435 MVDRGFLPRKLTFNRVLDGLLLTGNQDFAKEILSLQGGCGRLPRKFKL 482


>gi|449469499|ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
 gi|449487784|ref|XP_004157799.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
          Length = 502

 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/448 (74%), Positives = 392/448 (87%), Gaps = 2/448 (0%)

Query: 47  ILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSF 106
           ++  +DP++L  +LH   L +TP+LVD+++KRLW H  KAL FF  L YHP+YAHS SSF
Sbjct: 56  LVLESDPKSLRGSLHGLQLQFTPELVDKVLKRLWFHGPKALQFFKHLEYHPSYAHSASSF 115

Query: 107 DHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE 166
           DHAID+A R+RDY+TVW LV RM++  +GP+ KTFAIIAER+V+AGK DRA+K+FLSM E
Sbjct: 116 DHAIDIAGRMRDYKTVWALVARMRARRIGPSSKTFAIIAERFVAAGKPDRAIKVFLSMRE 175

Query: 167 HGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNK 225
           HGC Q L+SFNTILD+LCK K+VE AYN LFKV RGKFKADV+SYN+IANGWCL+KRT K
Sbjct: 176 HGCPQDLHSFNTILDILCKSKRVEMAYNNLFKVLRGKFKADVVSYNIIANGWCLIKRTPK 235

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
           ALEVLKEMV+RGL P +TTYNI+LKGYFRAGQ++EAW FFL+MK+R+ EIDVVTYTT+VH
Sbjct: 236 ALEVLKEMVERGLTPTITTYNILLKGYFRAGQLKEAWEFFLQMKEREVEIDVVTYTTMVH 295

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
           GFGVVGEIKRAR VF+ MV  G+LPS ATYNAMIQVLCKKDSVENA+L+FEEMV KGY+P
Sbjct: 296 GFGVVGEIKRARKVFNEMVGEGILPSTATYNAMIQVLCKKDSVENAVLMFEEMVKKGYVP 355

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           N TTYNVVIRGL H G M++A+EF+ RMK D CEPNVQTYN+ IRYFCDAG++E+GL +F
Sbjct: 356 NLTTYNVVIRGLFHAGNMDKAMEFIERMKTDGCEPNVQTYNVAIRYFCDAGDVEKGLSMF 415

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           EKMG G  LPNLDTYN+LIS+MFVRKKS+DL+VAGKLL+EMVDRGF+PRKFTFNRVLNGL
Sbjct: 416 EKMGQG-SLPNLDTYNVLISAMFVRKKSEDLVVAGKLLLEMVDRGFIPRKFTFNRVLNGL 474

Query: 466 LLIGNQGLAKEILRLQSRCGRLPRQFKL 493
           LL GNQ  AKEILRLQS+CGRLPRQFKL
Sbjct: 475 LLTGNQAFAKEILRLQSKCGRLPRQFKL 502


>gi|75194072|sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74900, mitochondrial; AltName: Full=Protein
           ORGANELLE TRANSCRIPT PROCESSING DEFECT 43; Flags:
           Precursor
 gi|5882733|gb|AAD55286.1|AC008263_17 Contains a PF|01535 DUF17 domain [Arabidopsis thaliana]
 gi|12323885|gb|AAG51911.1|AC013258_5 hypothetical protein; 69434-67986 [Arabidopsis thaliana]
          Length = 482

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/474 (68%), Positives = 384/474 (81%), Gaps = 8/474 (1%)

Query: 26  TTTSPAPLPPAAADPAALASLILTSTDPRTLTQT----LHCPSLHWTPQLVDQIIKRLWN 81
           T+ + A L P  AD AA+A LIL+S  P T  Q     L   +  WTP LV+ ++KRLWN
Sbjct: 11  TSAAGANLKPPPADSAAIAKLILSS--PNTTHQDDQFLLSTKTTPWTPNLVNSVLKRLWN 68

Query: 82  HALKALHFFNIL-SYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKT 140
           H  KAL FF+ L ++H  Y H  SSFD AID+AARL  + TVW+L+HRM+SL +GP+ KT
Sbjct: 69  HGPKALQFFHFLDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKT 128

Query: 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR 200
           FAI+AERY SAGK D+AVK+FL+MHEHGC Q L SFNTILD+LCK K+VEKAY LF+  R
Sbjct: 129 FAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALR 188

Query: 201 GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
           G+F  D ++YNVI NGWCL+KRT KALEVLKEMV+RG+NPNLTTYN +LKG+FRAGQI  
Sbjct: 189 GRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRH 248

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
           AW FFLEMKKR CEIDVVTYTT+VHGFGV GEIKRARNVFD M+  GVLPSVATYNAMIQ
Sbjct: 249 AWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQ 308

Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
           VLCKKD+VENA+++FEEMV +GY PN TTYNV+IRGL H GE  R  E + RM+++ CEP
Sbjct: 309 VLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEP 368

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAG 440
           N QTYN++IRY+ +  E+E+ L LFEKMGSG CLPNLDTYNILIS MFVRK+S+D++VAG
Sbjct: 369 NFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVAG 428

Query: 441 KLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG-RLPRQFKL 493
           KLL+EMV+RGF+PRKFTFNRVLNGLLL GNQ  AKEILRLQS+ G RL R+F+L
Sbjct: 429 KLLLEMVERGFIPRKFTFNRVLNGLLLTGNQAFAKEILRLQSKSGSRLLRKFRL 482


>gi|356541430|ref|XP_003539180.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Glycine max]
          Length = 492

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 300/460 (65%), Positives = 373/460 (81%), Gaps = 3/460 (0%)

Query: 36  AAADPAALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSY 95
           A A  A +A L+L S DPRTL++ L  P +HWTP+LV++ +KRLWNH  KAL FF  L  
Sbjct: 34  AEASDATIAKLVLES-DPRTLSEALTKPRIHWTPELVNKTLKRLWNHGPKALLFFKHLDR 92

Query: 96  H-PTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKA 154
           H P+Y HSPSSFDHA+D+AAR+RD+ + W LV RM+SL LGP+ KT AI+AERY S GK 
Sbjct: 93  HLPSYTHSPSSFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKTLAILAERYASIGKP 152

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIA 214
            RAV+ FLSMHEHG  Q L+SFNT+LD+LCK  +VE A++L +  + +F+ D +SYN++A
Sbjct: 153 HRAVRTFLSMHEHGLHQDLHSFNTLLDILCKSNRVETAHDLLRTLKSRFRPDTVSYNILA 212

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
           NG+CL KRT  AL VLKEMV RG+ P + TYN +LKGYFR+ QI+EAW F+LEMKKRKCE
Sbjct: 213 NGYCLKKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCE 272

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
           IDVV+YTT++HGFG  GE+K+A+ VFD MV  GV P+VATYNA+IQV CKKDSV+NA+ V
Sbjct: 273 IDVVSYTTVIHGFGEAGEVKKAKRVFDEMVKEGVAPNVATYNALIQVFCKKDSVQNAVAV 332

Query: 335 FEEMVGKGY-MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           FEEMV +G   PN  T+NVVIRGLCH G+MERAL F+ RM +     +VQTYN++IRYFC
Sbjct: 333 FEEMVREGVCSPNVVTFNVVIRGLCHVGDMERALGFMERMGEHGLRASVQTYNVVIRYFC 392

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
           DAGEIE+GLE+F KMG G+CLPNLDTYN+LIS+MFVRKKS+DL+VAGKLL+EMV+RGF+P
Sbjct: 393 DAGEIEKGLEVFGKMGDGLCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMEMVERGFLP 452

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQFKL 493
           RKFTFNRVLNGL++ GNQ  AK+ILR+QSRCGR+ R+ KL
Sbjct: 453 RKFTFNRVLNGLVITGNQDFAKDILRMQSRCGRVVRRLKL 492


>gi|356544698|ref|XP_003540784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Glycine max]
          Length = 495

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 298/455 (65%), Positives = 373/455 (81%), Gaps = 3/455 (0%)

Query: 41  AALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILS-YHPTY 99
           A +A L+L S DPRT+++ L  P++ WTP LV++++KRLWNH  KAL FF  L  +HP+Y
Sbjct: 42  ATIAKLVLES-DPRTVSEALTKPTIQWTPDLVNKVMKRLWNHGPKALQFFKHLDRHHPSY 100

Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
            HSPSSFDHA+D+AAR+RD+ + W LV RM+SL LGP+ KT AI+AERY S GK  RAV+
Sbjct: 101 THSPSSFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKTLAILAERYASNGKPHRAVR 160

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCL 219
            FLSM EHG RQ L+SFNT+LD+LCK K+VE A++L K    +F+ D ++YN++ANG+CL
Sbjct: 161 TFLSMAEHGIRQDLHSFNTLLDILCKSKRVETAHSLLKTLTSRFRPDTVTYNILANGYCL 220

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
           +KRT  AL VLKEMV RG+ P + TYN +LKGYFR+ QI+EAW F+LEMKKRKCEIDVVT
Sbjct: 221 IKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVT 280

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           YTT++HGFGV G++K+A+ VF  MV  GV+P+VATYNA+IQVLCKKDSVENA++VFEEM 
Sbjct: 281 YTTVIHGFGVAGDVKKAKRVFHEMVKEGVVPNVATYNALIQVLCKKDSVENAVVVFEEMA 340

Query: 340 GKGY-MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
            +G  +PN  TYNVVIRGLCH G+MERAL F+ RM +      VQTYN++IRYFCDAGE+
Sbjct: 341 REGVCVPNVVTYNVVIRGLCHVGDMERALGFMERMGEHGLRACVQTYNVVIRYFCDAGEV 400

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           E+ LE+F KMG G CLPNLDTYN+LIS+MFVRKKS+DL+VAGKLL++MVDRGF+PRKFTF
Sbjct: 401 EKALEVFGKMGDGSCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMDMVDRGFLPRKFTF 460

Query: 459 NRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQFKL 493
           NRVLNGL++ GNQ  AKEILR+QSRCGR+ R+ KL
Sbjct: 461 NRVLNGLVITGNQDFAKEILRMQSRCGRIVRRLKL 495


>gi|359491272|ref|XP_003634254.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Vitis vinifera]
          Length = 450

 Score =  630 bits (1625), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 307/454 (67%), Positives = 352/454 (77%), Gaps = 44/454 (9%)

Query: 41  AALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYA 100
           A + +L+L  TD +TLT+TL    + WTP LVD+++K LWNH  KAL FF  L YHPTYA
Sbjct: 40  ATIVNLVL-KTDSQTLTRTLEKYPVEWTPNLVDRVLKLLWNHGPKALQFFKSLDYHPTYA 98

Query: 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           H  SSFDHAID+A RLRDY+T+WTLV RM++  LGP  KTFAII ERYVSAGK DRA+KI
Sbjct: 99  HVSSSFDHAIDIAGRLRDYKTLWTLVDRMRTRRLGPNPKTFAIITERYVSAGKPDRAIKI 158

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCL 219
           F SMHEHGC Q LNSFNTILD+LCK K+VE A N LFKVFRG+                 
Sbjct: 159 FFSMHEHGCVQDLNSFNTILDVLCKSKRVEMADNKLFKVFRGR----------------- 201

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
                                    + I+LKG+FRAGQ++EAW FFL+MKKRKCEIDVVT
Sbjct: 202 -------------------------FRILLKGFFRAGQLKEAWEFFLQMKKRKCEIDVVT 236

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           YTT+VHGFGV GE+++A+ VF+ M+  GVLPSVATYNA IQVLCKKD+VENAI VFEEM+
Sbjct: 237 YTTVVHGFGVAGEVRKAQRVFNEMIGEGVLPSVATYNAFIQVLCKKDNVENAISVFEEML 296

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            KGYMPNSTTYNVVIRGLCH G ME+A+EF+ RMKDDECEPNVQ YN++IRYFCDA EIE
Sbjct: 297 RKGYMPNSTTYNVVIRGLCHVGRMEKAMEFMARMKDDECEPNVQIYNVVIRYFCDAEEIE 356

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
           +GL +FEKMG   CLPNLDTYNILIS+MFVRKKSD LL AGKLLIEMV+RGF+PRKFTFN
Sbjct: 357 KGLNVFEKMGDADCLPNLDTYNILISAMFVRKKSDYLLTAGKLLIEMVERGFLPRKFTFN 416

Query: 460 RVLNGLLLIGNQGLAKEILRLQSRCGRLPRQFKL 493
           RVL+GLLL GNQ  AKEILRLQSRCGRLPR+ KL
Sbjct: 417 RVLDGLLLTGNQDFAKEILRLQSRCGRLPRRLKL 450


>gi|186495472|ref|NP_177628.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|133778904|gb|ABO38792.1| At1g74900 [Arabidopsis thaliana]
 gi|332197524|gb|AEE35645.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 453

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 298/474 (62%), Positives = 356/474 (75%), Gaps = 37/474 (7%)

Query: 26  TTTSPAPLPPAAADPAALASLILTSTDPRTLTQT----LHCPSLHWTPQLVDQIIKRLWN 81
           T+ + A L P  AD AA+A LIL+S  P T  Q     L   +  WTP LV+ ++KRLWN
Sbjct: 11  TSAAGANLKPPPADSAAIAKLILSS--PNTTHQDDQFLLSTKTTPWTPNLVNSVLKRLWN 68

Query: 82  HALKALHFFNIL-SYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKT 140
           H  KAL FF+ L ++H  Y H  SSFD AID+AARL  + TVW+L+HRM+SL +GP+ KT
Sbjct: 69  HGPKALQFFHFLDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKT 128

Query: 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR 200
           FAI+AERY SAGK D+AVK+FL+MHEHGC Q L SFNTILD+LCK K+VEKAY LF+  R
Sbjct: 129 FAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALR 188

Query: 201 GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
           G+F  D ++YNVI NGWCL+KRT KALEVLKEMV+RG+NPNLTTYN +LKG+FRAGQI  
Sbjct: 189 GRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRH 248

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
           AW FFLEMKKR CEIDVVTYTT+VHGFGV GEIKRARNVFD M+  GVLPSVATYNAMIQ
Sbjct: 249 AWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQ 308

Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
           VLCKKD+VENA+++FEEMV +GY PN TTYNV+IRGL H GE  R  E + RM+++ CEP
Sbjct: 309 VLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEP 368

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAG 440
           N QTYN++IRY+ +  E+E+ L LFEKMGSG CLPNLDTYNILIS MFVRK+S+D++VA 
Sbjct: 369 NFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVA- 427

Query: 441 KLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG-RLPRQFKL 493
                                       GNQ  AKEILRLQS+ G RL R+F+L
Sbjct: 428 ----------------------------GNQAFAKEILRLQSKSGSRLLRKFRL 453


>gi|51971677|dbj|BAD44503.1| hypothetical protein [Arabidopsis thaliana]
          Length = 447

 Score =  603 bits (1555), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 297/474 (62%), Positives = 355/474 (74%), Gaps = 37/474 (7%)

Query: 26  TTTSPAPLPPAAADPAALASLILTSTDPRTLTQT----LHCPSLHWTPQLVDQIIKRLWN 81
           T+ + A L P  AD AA+A LIL+S  P T  Q     L   +  WTP LV+ ++KRLWN
Sbjct: 5   TSAAGANLKPPPADSAAIAKLILSS--PNTTHQDDQFLLSTKTTPWTPNLVNSVLKRLWN 62

Query: 82  HALKALHFFNIL-SYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKT 140
           H  KAL FF+ L ++H  Y H  SSFD AID+AARL  + TVW+L+HRM+SL +GP+ KT
Sbjct: 63  HGPKALQFFHFLDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKT 122

Query: 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR 200
           FAI+AERY SAGK D+AVK+FL+MHEHGC Q L SFNTILD+LCK K+VEKAY LF+  R
Sbjct: 123 FAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALR 182

Query: 201 GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
           G+F  D ++YNVI NGWCL+KRT K LEVLKEMV+RG+NPNLTTYN +LKG+FRAGQI  
Sbjct: 183 GRFSVDTVTYNVILNGWCLIKRTPKTLEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRH 242

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
           AW FFLEMKKR CEIDVVTYTT+VHGFGV GEIKRARNVFD M+  GVLPSVATYNAMIQ
Sbjct: 243 AWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQ 302

Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
           VLCKKD+VENA+++FEEMV +GY PN TTYNV+IRGL H GE  R  E + RM+++ CEP
Sbjct: 303 VLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEP 362

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAG 440
           N QTYN++IRY+ +  E+E+ L LFEKMGSG CLPNLDTYNILIS MFVRK+S+D++VA 
Sbjct: 363 NFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVA- 421

Query: 441 KLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG-RLPRQFKL 493
                                       GNQ  AKEILRLQS+ G RL R+F+L
Sbjct: 422 ----------------------------GNQAFAKEILRLQSKSGSRLLRKFRL 447


>gi|297839365|ref|XP_002887564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333405|gb|EFH63823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 451

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 296/476 (62%), Positives = 358/476 (75%), Gaps = 37/476 (7%)

Query: 23  SPLTTTSPAPLPPAAADPAALASLILT---STDPRTLTQTLHCPSLHWTPQLVDQIIKRL 79
           S  T+ + A L P  ADPAA+A LIL+   + D + +  T   P   WTP LV+ ++KRL
Sbjct: 8   SLCTSAAGANLKPPPADPAAIAKLILSFHQTLDDQFILSTKTTP---WTPNLVNSVLKRL 64

Query: 80  WNHALKALHFFNIL-SYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQ 138
           WNH  KAL FF+ L ++H  Y H  SSFD AID+AARL  + TVW+L+HRM+SL +GP+ 
Sbjct: 65  WNHGPKALQFFHFLDNHHREYVHDASSFDLAIDIAARLHIHPTVWSLIHRMRSLRIGPSP 124

Query: 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV 198
           KTFAI+AERY S+GK D+AVK+FL+MHEHGC Q L SFNTILD+LCK K+VEKAY LF+ 
Sbjct: 125 KTFAIVAERYASSGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRA 184

Query: 199 FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
            RG+F AD ++YNVI NGWCL+KRT KALEVLKEMVDRG+NPNLTTYN +L+G+FRAGQI
Sbjct: 185 LRGRFSADTVTYNVIVNGWCLIKRTPKALEVLKEMVDRGINPNLTTYNTMLQGFFRAGQI 244

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
            +AW FFLEMKKR CEIDVVTYTT+VHGFGV GEIKR RNVFD M+  GVLPSVATYNA 
Sbjct: 245 RQAWEFFLEMKKRNCEIDVVTYTTVVHGFGVAGEIKRTRNVFDEMIREGVLPSVATYNAF 304

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           IQVLCKKDSVENA+++FEEMV KGY PN TTYNV+IRGL H G+  R  E + RM+++ C
Sbjct: 305 IQVLCKKDSVENAVVMFEEMVRKGYEPNVTTYNVLIRGLFHAGKFSRGEELMQRMENEGC 364

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
           EPN QTYN++IRY+ +  E+E+ L LFEKMG+G CLPNLDTYNILIS MFVRK+S+D++V
Sbjct: 365 EPNFQTYNMMIRYYSECSEVEKALGLFEKMGTGDCLPNLDTYNILISGMFVRKRSEDMVV 424

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC-GRLPRQFKL 493
           A                             GNQ  AKEILRLQS+  GRL R+F+L
Sbjct: 425 A-----------------------------GNQAFAKEILRLQSKSGGRLLRKFRL 451


>gi|297733848|emb|CBI15095.3| unnamed protein product [Vitis vinifera]
          Length = 815

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 264/414 (63%), Positives = 303/414 (73%), Gaps = 50/414 (12%)

Query: 41  AALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYA 100
           A + +L+L  TD +TLT+TL    + WTP LVD+++K LWNH  KAL FF  L YHPTYA
Sbjct: 40  ATIVNLVL-KTDSQTLTRTLEKYPVEWTPNLVDRVLKLLWNHGPKALQFFKSLDYHPTYA 98

Query: 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           H  SSFDHAID+A RLRDY+T+WTLV RM++  LGP  KTFAII ERYVSAGK DRA+KI
Sbjct: 99  HVSSSFDHAIDIAGRLRDYKTLWTLVDRMRTRRLGPNPKTFAIITERYVSAGKPDRAIKI 158

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV 220
           F SMHEHGC Q LNSFNTILD+L                                  C  
Sbjct: 159 FFSMHEHGCVQDLNSFNTILDVL----------------------------------CKS 184

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
           KR         EM D  L         V +G+FRAGQ++EAW FFL+MKKRKCEIDVVTY
Sbjct: 185 KRV--------EMADNKLFK-------VFRGFFRAGQLKEAWEFFLQMKKRKCEIDVVTY 229

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
           TT+VHGFGV GE+++A+ VF+ M+  GVLPSVATYNA IQVLCKKD+VENAI VFEEM+ 
Sbjct: 230 TTVVHGFGVAGEVRKAQRVFNEMIGEGVLPSVATYNAFIQVLCKKDNVENAISVFEEMLR 289

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           KGYMPNSTTYNVVIRGLCH G ME+A+EF+ RMKDDECEPNVQ YN++IRYFCDA EIE+
Sbjct: 290 KGYMPNSTTYNVVIRGLCHVGRMEKAMEFMARMKDDECEPNVQIYNVVIRYFCDAEEIEK 349

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
           GL +FEKMG   CLPNLDTYNILIS+MFVRKKSD LL AGKLLIEMV+RGF  R
Sbjct: 350 GLNVFEKMGDADCLPNLDTYNILISAMFVRKKSDYLLTAGKLLIEMVERGFCKR 403



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 105/218 (48%), Gaps = 20/218 (9%)

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
           W     M+ R+   +  T+  I   +   G+  RA  +F  M   G +  + ++N ++ V
Sbjct: 121 WTLVDRMRTRRLGPNPKTFAIITERYVSAGKPDRAIKIFFSMHEHGCVQDLNSFNTILDV 180

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           LCK   VE              M ++  + V  RG    G+++ A EF  +MK  +CE +
Sbjct: 181 LCKSKRVE--------------MADNKLFKV-FRGFFRAGQLKEAWEFFLQMKKRKCEID 225

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISSMFVRKKSDDLLVAG 440
           V TY  ++  F  AGE+ +   +F +M G GV LP++ TYN  I    V  K D++  A 
Sbjct: 226 VVTYTTVVHGFGVAGEVRKAQRVFNEMIGEGV-LPSVATYNAFIQ---VLCKKDNVENAI 281

Query: 441 KLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
            +  EM+ +G+MP   T+N V+ GL  +G    A E +
Sbjct: 282 SVFEEMLRKGYMPNSTTYNVVIRGLCHVGRMEKAMEFM 319


>gi|413938248|gb|AFW72799.1| hypothetical protein ZEAMMB73_717335 [Zea mays]
          Length = 501

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 224/442 (50%), Positives = 318/442 (71%), Gaps = 22/442 (4%)

Query: 68  TPQLVDQIIKRLWNHALKALHFFNILSYHPTYAH--SPSSFDHAIDLAARLRDYRTVWTL 125
           TP + + +IK LW+HA +AL FF+ L   P  +   SP + D A+DLAARLR  R + + 
Sbjct: 66  TP-VANAVIKLLWHHAPRALLFFHALLRLPERSRDLSPCTVDLALDLAARLRHPRQLTSS 124

Query: 126 VHRMKSLSLGP------TQKTFAIIAERY-VSAGKADRAVKIFLSMH-EHGCRQSLNSFN 177
           +     L+L P      T +TF I+ ER+ +S  + D A+++FLS+H  HG  Q L  FN
Sbjct: 125 I-----LALFPRHGLAFTPRTFPILFERFAMSHRRPDLAIRLFLSLHRSHGIAQDLPLFN 179

Query: 178 TILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           ++LD L K ++  KA +L +    +F  D ++YN +A+GWC VK T++AL++L++MV+ G
Sbjct: 180 SLLDALVKSRRASKAASLVRALEQRFPPDAVTYNTLADGWCRVKDTSRALDILRQMVESG 239

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR-----KCEIDVVTYTTIVHGFGVVGE 292
           + P   TYNI+LKG+FR+GQ++ AW FFL+MK+R      C+ DVV+YTT++HG GV G+
Sbjct: 240 IAPTKATYNIILKGFFRSGQLQHAWDFFLQMKRRGSNDENCKPDVVSYTTVLHGLGVAGQ 299

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           + +AR VFD M   G  PS ATYNA+IQV CKK ++E+A+ VF++MV KGY+PN  TY V
Sbjct: 300 LDKARKVFDEMSIEGCKPSTATYNALIQVTCKKGNLEDAVAVFDDMVRKGYIPNVVTYTV 359

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG- 411
           +IRGLCH G++ RA++ + RMK + CEPNVQTYN+LIRY  + GEIE+GL+LFE M  G 
Sbjct: 360 LIRGLCHAGKVVRAMKLLDRMKSEGCEPNVQTYNVLIRYSLEEGEIEKGLDLFETMSKGE 419

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
            CLPN DTYNI+IS+MFVRK+++D+ VA ++++EMVDRG++PRKF FNRVLNGL+L GNQ
Sbjct: 420 ECLPNQDTYNIIISAMFVRKRAEDMAVAARMVVEMVDRGYLPRKFMFNRVLNGLMLTGNQ 479

Query: 472 GLAKEILRLQSRCGRLPRQFKL 493
            L++E+LR+Q +  RL R+ +L
Sbjct: 480 ELSRELLRMQEKYTRLRREIRL 501


>gi|242062936|ref|XP_002452757.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
 gi|241932588|gb|EES05733.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
          Length = 502

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 221/439 (50%), Positives = 314/439 (71%), Gaps = 21/439 (4%)

Query: 71  LVDQIIKRLWNHALKALHFFNILSYHPTYAH--SPSSFDHAIDLAARLRDYRTVWTLVHR 128
           + + +IK LW+HA +AL FF+ L   P  +   SP + D A+DLAARLR  R + + +  
Sbjct: 69  VANAVIKLLWHHAPRALLFFHALLRLPERSRDLSPCTVDLALDLAARLRHPRQLTSSI-- 126

Query: 129 MKSLSLGP------TQKTFAIIAERY-VSAGKADRAVKIFLSMH-EHGCRQSLNSFNTIL 180
              L+L P      T +TF I+ ER+ VS  + D AV+ FLS+H  HG  Q L  FN++L
Sbjct: 127 ---LALFPRHGLAFTPRTFPIMFERFAVSHRRPDHAVRFFLSLHRSHGVAQDLPLFNSLL 183

Query: 181 DLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
           D L K +   KA +L +    +F  D ++YN +A+GWC VK T++AL++L++MV+ G+ P
Sbjct: 184 DALVKSRHAGKAASLVRALERRFPPDAVTYNTLADGWCRVKDTSRALDILRQMVESGIAP 243

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR-----KCEIDVVTYTTIVHGFGVVGEIKR 295
             TTYNI+LKG+FR+GQ++ AW FFL+MKKR      C+ DVV+YTT++HG GV G++ +
Sbjct: 244 TKTTYNIILKGFFRSGQLQHAWDFFLQMKKRGSNDENCKPDVVSYTTVLHGLGVAGQLDK 303

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
           AR VFD M   G  PS+ATYNA+IQV CKK +VE+A+ VF++M+ KGY+PN  TY V+IR
Sbjct: 304 ARKVFDEMSREGCTPSIATYNALIQVTCKKGNVEDAVAVFDDMIRKGYIPNVVTYTVLIR 363

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG-VCL 414
           GLCH G+++RA++ + +MK + CEPNVQTYN+LI Y  + G+IE+ L LFE M  G  CL
Sbjct: 364 GLCHAGKIDRAMKLLDKMKREGCEPNVQTYNVLIGYLFEEGDIEKALHLFETMSKGEECL 423

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           PN DTYNI+IS+MFVRK+++D+ VA ++++EMVDRG++PR+F FNRVLNGL+L GNQ L+
Sbjct: 424 PNQDTYNIIISAMFVRKRAEDMAVAARMVVEMVDRGYLPRRFMFNRVLNGLMLTGNQELS 483

Query: 475 KEILRLQSRCGRLPRQFKL 493
           +E+LR+Q +  RL R+ +L
Sbjct: 484 RELLRMQEKYTRLRREIRL 502


>gi|115447913|ref|NP_001047736.1| Os02g0679200 [Oryza sativa Japonica Group]
 gi|50253128|dbj|BAD29374.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113537267|dbj|BAF09650.1| Os02g0679200 [Oryza sativa Japonica Group]
          Length = 491

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/460 (50%), Positives = 325/460 (70%), Gaps = 11/460 (2%)

Query: 45  SLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHS-- 102
           S  LT    R+L+ +L   +      + D ++K LW+HA +AL FF+ L + P  AH+  
Sbjct: 32  SSALTPASTRSLSASLLAVAPSLPTPVADSVLKLLWHHAPRALLFFHSLLHLPPRAHAVG 91

Query: 103 PSSFDHAIDLAARLRDYRTVW-TLVHRMKSLSLGPTQKTFAIIAERY-VSAGKADRAVKI 160
           PS+ D A+DL+ARLR  R +  +++       L  T +TF I+ ER  VS  + D AV++
Sbjct: 92  PSTLDLALDLSARLRRPRQLTNSILGLFPRHRLAFTPRTFPILFERLAVSQRRPDLAVRL 151

Query: 161 FLSMH-EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCL 219
           FLS+H  H   Q L  FN++LD L K +   KA +L +    +F  DV++YN +A+GWC 
Sbjct: 152 FLSLHRSHRVAQDLPLFNSLLDALSKSRHAGKAASLVRALEQRFTPDVVTYNTLADGWCR 211

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR-----KCE 274
           VK T++AL+VL+ MV+ G+ P  TTYNI+LKG+FRAGQ+  AW FFL+MKKR      C+
Sbjct: 212 VKDTSRALDVLRLMVESGIAPTKTTYNIILKGFFRAGQLRHAWDFFLQMKKRGSKDESCK 271

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
            DVV+YTT+VHG GV G++++AR VFD M   G  PSVATYNA+IQV+CKK +VE+A+ V
Sbjct: 272 PDVVSYTTMVHGLGVAGQLEKARKVFDEMAKEGCAPSVATYNALIQVICKKGNVEDAVTV 331

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
           F+ M  KGY+PN  TY V+IRGLCH G+++R L+ + RMK+  CEP VQTYN+LIRY  +
Sbjct: 332 FDGMRVKGYVPNVVTYTVLIRGLCHAGKIDRGLKLLERMKNGGCEPIVQTYNVLIRYLFE 391

Query: 395 AGEIERGLELFEKMGSG-VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
            GE+E+GL+LFEKM  G  CLPN DTYNI+IS+MF+RK+++D+++A +++ EMVDRG++P
Sbjct: 392 EGEMEKGLDLFEKMSKGEECLPNQDTYNIIISAMFMRKRAEDMVLAARMVEEMVDRGYLP 451

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQFKL 493
           R+F FNRVLNGL+L GNQ L++++LR+Q +  RL R+ +L
Sbjct: 452 RRFMFNRVLNGLMLTGNQELSRKLLRMQEKYRRLQREIRL 491


>gi|218191356|gb|EEC73783.1| hypothetical protein OsI_08468 [Oryza sativa Indica Group]
          Length = 616

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/453 (50%), Positives = 321/453 (70%), Gaps = 17/453 (3%)

Query: 45  SLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHS-- 102
           S  LT    R+L+ +L   +      + D ++K LW+HA +AL FF+ L + P  AH+  
Sbjct: 32  SSALTPASTRSLSASLLAVAPSLPTPVADSVLKLLWHHAPRALLFFHSLLHLPPRAHAVG 91

Query: 103 PSSFDHAIDLAARLRDYR----TVWTLVHRMKSLSLGPTQKTFAIIAERY-VSAGKADRA 157
           PS+ D A+DL+ARLR  R    ++  L  R +   L  T +TF I+ ER  VS  + D A
Sbjct: 92  PSTLDLALDLSARLRRPRQLTNSILGLFPRHR---LAFTPRTFPILFERLAVSQRRPDLA 148

Query: 158 VKIFLSMH-EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG 216
           V++FLS+H  H   Q L  FN++LD L K +   KA +L +    +F  DV++YN +A+G
Sbjct: 149 VRLFLSLHRSHRVAQDLPLFNSLLDALSKSRHAGKAASLVRALEQRFTPDVVTYNTLADG 208

Query: 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR----- 271
           WC VK T++AL+VL+ MV+ G+ P  TTYNI+LKG+FRAGQ+  AW FFL+MKKR     
Sbjct: 209 WCRVKDTSRALDVLRLMVESGIAPTKTTYNIILKGFFRAGQLRHAWDFFLQMKKRGSKDE 268

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
            C+ DVV+YTT+VHG GV G++++AR VFD M   G  PSVATYNA+IQV+CKK +VE+A
Sbjct: 269 SCKPDVVSYTTMVHGLGVAGQLEKARKVFDEMAKEGCAPSVATYNALIQVICKKGNVEDA 328

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
           + VF+ M+ KGY+PN  TY V+IRGLCH G+++R L+ + RMK+  CEP VQTYN+LIRY
Sbjct: 329 VTVFDGMLVKGYVPNVVTYTVLIRGLCHAGKIDRGLKLLERMKNGGCEPIVQTYNVLIRY 388

Query: 392 FCDAGEIERGLELFEKMGSG-VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450
             + GE+E+GL+LFEKM  G  CLPN DTYNI+IS+MF+RK+++D+++A +++ EMVDRG
Sbjct: 389 LFEEGEMEKGLDLFEKMSKGEECLPNQDTYNIIISAMFMRKRAEDMVLAARMVDEMVDRG 448

Query: 451 FMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           ++PR+F FNRVLNGL+L GNQ L++++LR+Q +
Sbjct: 449 YLPRRFMFNRVLNGLMLTGNQELSRKLLRMQEK 481


>gi|326513116|dbj|BAK06798.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 489

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 222/457 (48%), Positives = 323/457 (70%), Gaps = 11/457 (2%)

Query: 48  LTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAH--SPSS 105
           LT+   R+L+ +L   +      + ++++K LW+HA +AL FF+ L + P  AH  SP +
Sbjct: 33  LTTASARSLSASLLAVAPALPTPVANRVLKLLWHHAPRALLFFHSLLHLPARAHAVSPCT 92

Query: 106 FDHAIDLAARLRDYRTVW-TLVHRMKSLSLGPTQKTFAIIAERYV-SAGKADRAVKIFLS 163
            D A+DL+ARLR  R +  +++     L L  T +TF I+ ER+  S  + D AV++FLS
Sbjct: 93  IDLALDLSARLRHPRQLTNSILALFPRLRLPFTPRTFPILFERFAASQRRPDIAVRLFLS 152

Query: 164 MH-EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKR 222
           +H  H   Q L  FN++LD L K +   KA +L +    +F  DV++YN +A+GWC  K 
Sbjct: 153 LHRSHRVVQDLPLFNSLLDALGKSRHASKAASLVRALERRFPPDVVTYNTLADGWCRAKD 212

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR-----KCEIDV 277
           T++AL++L++M + G+ P  TTYNI+LKG+FRAGQI+ AW FFL+MKKR      C+ D+
Sbjct: 213 TSRALDLLRQMAESGVTPTKTTYNIILKGFFRAGQIQHAWNFFLQMKKRGAKDESCKPDI 272

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           V+YTTI+HG GV G++ +AR +FD M   G  PSVATYNA+IQV+CKK +VE+A+ VF++
Sbjct: 273 VSYTTIIHGLGVAGQLDKARKLFDEMSKEGCTPSVATYNALIQVICKKGNVEDAVTVFDD 332

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           MV K YMPN  TY V+IRGLCH G+++RA++ + RMK + CEP VQTYN+LIRY  + GE
Sbjct: 333 MVRKDYMPNVVTYTVLIRGLCHVGKIDRAMKLMERMKGEGCEPVVQTYNVLIRYSFEEGE 392

Query: 398 IERGLELFEKMGSGV-CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
           IE+ L LFE+M  G  CLPN DTYNI+IS+MFVRK+++D+  A ++++EMV+RG++PR+F
Sbjct: 393 IEKALCLFERMSKGEDCLPNQDTYNIIISAMFVRKRAEDMATAARMVMEMVERGYLPRRF 452

Query: 457 TFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQFKL 493
             NRVLNGL+L GNQ +++++LR+Q +  RL R+ +L
Sbjct: 453 MLNRVLNGLMLTGNQQISRDLLRMQEKYRRLRREIRL 489


>gi|357143144|ref|XP_003572818.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Brachypodium distachyon]
          Length = 496

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/485 (46%), Positives = 336/485 (69%), Gaps = 20/485 (4%)

Query: 24  PLTTTSPAPLPPAAADPAALA----SLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRL 79
           P TT+SP+     A   AAL     S  LT+   R+L+ +L   +      + + ++K L
Sbjct: 17  PATTSSPS-----ARQIAALVLNHPSSTLTTASARSLSASLLAVAPALPTPVANSVLKLL 71

Query: 80  WNHALKALHFFNILSYHPTYAH--SPSSFDHAIDLAARLRDYRTVW-TLVHRMKSLSLGP 136
           W+H  +AL FF+ L + P  AH  SP + D A+DL+ARLR  R +  +++     L L  
Sbjct: 72  WHHGPRALLFFHALLHLPARAHAVSPCTIDLALDLSARLRHPRQLTNSILALFPRLRLPF 131

Query: 137 TQKTFAIIAERYV-SAGKADRAVKIFLSMH-EHGCRQSLNSFNTILDLLCKEKKVEKAYN 194
           T +TF I+ ER+  S  + D AV++FLS+H  H   Q L  FN++LD L K +   KA +
Sbjct: 132 TPRTFPILFERFAASQRRPDIAVRLFLSLHRSHRVAQDLPLFNSLLDALGKSRHASKAAS 191

Query: 195 LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           L +    +F  DV++YN +A+GWC VK T++AL++L++M + G+ P  TTYN++LKG+FR
Sbjct: 192 LVRALERRFPPDVVTYNTLADGWCRVKDTSRALDLLRQMAESGIAPTKTTYNVILKGFFR 251

Query: 255 AGQIEEAWRFFLEMKKR-----KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
           AGQ++ AW FFL+MKKR      C+ DVV+YTTI+HG GV G++ +AR +FD M   G  
Sbjct: 252 AGQLQHAWNFFLQMKKRGSKDENCKPDVVSYTTIIHGLGVAGQLDKARKLFDEMSKEGCP 311

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           P++ATYNA+IQV+CKK +VE+A+ VF++M+ K Y+PN  TY V+IRGLCH G+++RA++ 
Sbjct: 312 PTIATYNALIQVICKKGNVEDAVTVFDDMIRKDYIPNVVTYTVLIRGLCHVGKIDRAMKL 371

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG-VCLPNLDTYNILISSMF 428
           + RMK++ CEP VQTYN+LIRY  + GE+++ L LFE+M  G  CLPN DTYNI+IS+MF
Sbjct: 372 MERMKNEGCEPVVQTYNVLIRYSFEEGEMDKALHLFERMSKGEECLPNQDTYNIVISAMF 431

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           VRK+++D+ +A ++++EMV+RG++PR+F  NRVLNGL+L GNQ L++++LR+Q +  RL 
Sbjct: 432 VRKRAEDMAIAARMVMEMVERGYLPRRFMLNRVLNGLMLTGNQQLSRDLLRMQEKYRRLR 491

Query: 489 RQFKL 493
           R+ +L
Sbjct: 492 REIRL 496


>gi|357462023|ref|XP_003601293.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
 gi|355490341|gb|AES71544.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
          Length = 317

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/316 (62%), Positives = 240/316 (75%), Gaps = 4/316 (1%)

Query: 4   LLRKPPKNHLHFFCIYRGLSPLTTTSPAPLPPAAADPAALASLILTSTDPRTLTQTLHCP 63
           LL KP + +L+       L+ LTT   +P PP  A    +A L+L S DP+TL+QTL  P
Sbjct: 5   LLVKPAQRNLNTSRFRLPLATLTTVPESPPPPIDA---TVAKLVLES-DPKTLSQTLSNP 60

Query: 64  SLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVW 123
           +  WTP LVD I+KRLWNH  KAL FF  L  HPTY HS SSF+HA+D+AARLR+Y T W
Sbjct: 61  TFQWTPLLVDNILKRLWNHGPKALQFFKHLDRHPTYIHSISSFEHAVDIAARLREYNTAW 120

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            L+ RM++L LGPT KTFAI+AERY + GKA +AVK+FLSMHEHGC Q LNSFNTILD+L
Sbjct: 121 ALMGRMRALRLGPTPKTFAILAERYATGGKAHKAVKVFLSMHEHGCHQDLNSFNTILDVL 180

Query: 184 CKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           CK K+VE A NLFK  RG+FK D +SYN++ANGWCL+KRT  AL+VLKEMV+RG++P + 
Sbjct: 181 CKTKRVEMANNLFKTLRGRFKCDSVSYNIMANGWCLIKRTPMALQVLKEMVERGVDPTMV 240

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN +LKGYFR GQ+ EAW FFLEMKKRKCEIDVVTYTT+VHGFGV GE+KR++ VFD M
Sbjct: 241 TYNTLLKGYFRCGQLNEAWEFFLEMKKRKCEIDVVTYTTMVHGFGVAGEVKRSKRVFDAM 300

Query: 304 VNGGVLPSVATYNAMI 319
           V  G+   V + + +I
Sbjct: 301 VKEGLFLRVPSSDLVI 316



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 100/220 (45%), Gaps = 15/220 (6%)

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
           ++  N A  ++  M    L P   T+ I+ + Y   G+  +A + FL M +  C  D+ +
Sbjct: 113 LREYNTAWALMGRMRALRLGPTPKTFAILAERYATGGKAHKAVKVFLSMHEHGCHQDLNS 172

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           + TI+        ++ A N+F  +  G       +YN M    C       A+ V +EMV
Sbjct: 173 FNTILDVLCKTKRVEMANNLFKTL-RGRFKCDSVSYNIMANGWCLIKRTPMALQVLKEMV 231

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            +G  P   TYN +++G    G++  A EF   MK  +CE +V TY  ++  F  AGE++
Sbjct: 232 ERGVDPTMVTYNTLLKGYFRCGQLNEAWEFFLEMKKRKCEIDVVTYTTMVHGFGVAGEVK 291

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA 439
           R   +F+ M              +   +F+R  S DL++ 
Sbjct: 292 RSKRVFDAM--------------VKEGLFLRVPSSDLVIT 317



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/169 (20%), Positives = 73/169 (43%), Gaps = 6/169 (3%)

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           S++++   + +  +      A  +   M      P   T+ ++       G+  +A++  
Sbjct: 99  SISSFEHAVDIAARLREYNTAWALMGRMRALRLGPTPKTFAILAERYATGGKAHKAVKVF 158

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISSMFV 429
             M +  C  ++ ++N ++   C    +E    LF+ + G   C  +  +YNI+ +   +
Sbjct: 159 LSMHEHGCHQDLNSFNTILDVLCKTKRVEMANNLFKTLRGRFKC--DSVSYNIMANGWCL 216

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
            K++    +A ++L EMV+RG  P   T+N +L G    G    A E  
Sbjct: 217 IKRTP---MALQVLKEMVERGVDPTMVTYNTLLKGYFRCGQLNEAWEFF 262


>gi|222623443|gb|EEE57575.1| hypothetical protein OsJ_07927 [Oryza sativa Japonica Group]
          Length = 520

 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 142/305 (46%), Positives = 199/305 (65%), Gaps = 16/305 (5%)

Query: 45  SLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHS-- 102
           S  LT    R+L+ +L   +      + D ++K LW+HA +AL FF+ L + P  AH+  
Sbjct: 86  SSALTPASTRSLSASLLAVAPSLPTPVADSVLKLLWHHAPRALLFFHSLLHLPPRAHAVG 145

Query: 103 PSSFDHAIDLAARLRDYR----TVWTLVHRMKSLSLGPTQKTFAIIAERY-VSAGKADRA 157
           PS+ D A+DL+ARLR  R    ++  L  R +   L  T +TF I+ ER  VS  + D A
Sbjct: 146 PSTLDLALDLSARLRRPRQLTNSILGLFPRHR---LAFTPRTFPILFERLAVSQRRPDLA 202

Query: 158 VKIFLSMH-EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG 216
           V++FLS+H  H   Q L  FN++LD L K +   KA +L +    +F  DV++YN +A+G
Sbjct: 203 VRLFLSLHRSHRVAQDLPLFNSLLDALSKSRHAGKAASLVRALEQRFTPDVVTYNTLADG 262

Query: 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR----- 271
           WC VK T++AL+VL+ MV+ G+ P  TTYNI+LKG+FRAGQ+  AW FFL+MKKR     
Sbjct: 263 WCRVKDTSRALDVLRLMVESGIAPTKTTYNIILKGFFRAGQLRHAWDFFLQMKKRGSKDE 322

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
            C+ DVV+YTT+VHG GV G++++AR VFD M   G  PSVATYNA+IQV+CKK +VE+A
Sbjct: 323 SCKPDVVSYTTMVHGLGVAGQLEKARKVFDEMAKEGCAPSVATYNALIQVICKKGNVEDA 382

Query: 332 ILVFE 336
           + VF+
Sbjct: 383 VTVFD 387



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 5/131 (3%)

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           P V TYN +    C+      A+ V   MV  G  P  TTYN++++G    G++  A +F
Sbjct: 251 PDVVTYNTLADGWCRVKDTSRALDVLRLMVESGIAPTKTTYNIILKGFFRAGQLRHAWDF 310

Query: 370 VGRM-----KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
             +M     KD+ C+P+V +Y  ++     AG++E+  ++F++M    C P++ TYN LI
Sbjct: 311 FLQMKKRGSKDESCKPDVVSYTTMVHGLGVAGQLEKARKVFDEMAKEGCAPSVATYNALI 370

Query: 425 SSMFVRKKSDD 435
             +  +   +D
Sbjct: 371 QVICKKGNVED 381



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 6/171 (3%)

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           +L  +N +L    ++    +A      +++R    DVVTY T+  G+  V +  RA +V 
Sbjct: 218 DLPLFNSLLDALSKSRHAGKAASLVRALEQRFTP-DVVTYNTLADGWCRVKDTSRALDVL 276

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM-----PNSTTYNVVIR 355
             MV  G+ P+  TYN +++   +   + +A   F +M  +G       P+  +Y  ++ 
Sbjct: 277 RLMVESGIAPTKTTYNIILKGFFRAGQLRHAWDFFLQMKKRGSKDESCKPDVVSYTTMVH 336

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
           GL   G++E+A +    M  + C P+V TYN LI+  C  G +E  + +F+
Sbjct: 337 GLGVAGQLEKARKVFDEMAKEGCAPSVATYNALIQVICKKGNVEDAVTVFD 387



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 9/161 (5%)

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           +N+++  L K      A  +   +  + + P+  TYN +  G C   +  RAL+ +  M 
Sbjct: 222 FNSLLDALSKSRHAGKAASLVRALEQR-FTPDVVTYNTLADGWCRVKDTSRALDVLRLMV 280

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELF---EKMGSG--VCLPNLDTYNILISSMFV 429
           +    P   TYNI+++ F  AG++    + F   +K GS    C P++ +Y  ++  + V
Sbjct: 281 ESGIAPTKTTYNIILKGFFRAGQLRHAWDFFLQMKKRGSKDESCKPDVVSYTTMVHGLGV 340

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
              +  L  A K+  EM   G  P   T+N ++  +   GN
Sbjct: 341 ---AGQLEKARKVFDEMAKEGCAPSVATYNALIQVICKKGN 378



 Score = 46.2 bits (108), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 115 RLRDYRTVWTLVHRMKSL-----SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           R    R  W    +MK       S  P   ++  +      AG+ ++A K+F  M + GC
Sbjct: 300 RAGQLRHAWDFFLQMKKRGSKDESCKPDVVSYTTMVHGLGVAGQLEKARKVFDEMAKEGC 359

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
             S+ ++N ++ ++CK+  VE A  +F VF
Sbjct: 360 APSVATYNALIQVICKKGNVEDAVTVFDVF 389


>gi|224084978|ref|XP_002307458.1| predicted protein [Populus trichocarpa]
 gi|222856907|gb|EEE94454.1| predicted protein [Populus trichocarpa]
          Length = 440

 Score =  238 bits (608), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 136/428 (31%), Positives = 223/428 (52%), Gaps = 5/428 (1%)

Query: 48  LTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFD 107
           + S+   TL   L    +  + Q+V+ ++K+  N  + A  FF        Y HS  +F 
Sbjct: 1   MMSSSVVTLDTALDQSGVRVSEQIVEDVLKKFENAGMVAYRFFEWAEKQRHYNHSVKAFH 60

Query: 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH 167
             ID  A++R Y+ +W +V  MKS  +   + TF II  +Y  A K + AV  F  M ++
Sbjct: 61  TVIDSLAKIRQYQLMWDVVKVMKSKRMVNVE-TFCIIMRKYARAQKVEEAVYTFNIMDKY 119

Query: 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKAL 227
               +L +FN +L  LCK K V KA  +F   + +F  D  +Y+++  GW       KA 
Sbjct: 120 DVPPNLAAFNGLLSALCKSKNVRKAQEIFDSIKDRFVPDSKTYSILLEGWGKDPNLPKAR 179

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
           E+ +EMV  G  P++ TY I++    +AG+++EA     EM    C+     Y+ +VH +
Sbjct: 180 EIFREMVSNGCRPDIVTYGIMVDVLCKAGRVDEALGIVNEMDSTVCKPTPFIYSVLVHTY 239

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
           G+   I+ A + F  M N G+ P VA YNA+I   CK + ++N   V  EM  KG  PNS
Sbjct: 240 GIENRIEDAVSTFLEMENNGIEPDVAVYNALIGAFCKANRLKNVYRVLNEMDCKGVTPNS 299

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
            T+N+++  L   GE + A     RM    CEP+  TY ++I+ FC+  E+++ L++++ 
Sbjct: 300 RTFNIILSSLIGRGETDEAYRVFLRMI-KVCEPDADTYTMMIKMFCERDELKKALKVWKY 358

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467
           M     +P++ T+ +LI+ +    +  D+  A  LL EM+++G  P   TF R+   L+ 
Sbjct: 359 MKLKRFMPSMHTFQVLINGLC---EKGDVTQACVLLEEMIEKGIRPSGVTFGRLRQLLIK 415

Query: 468 IGNQGLAK 475
            G + + K
Sbjct: 416 EGREDVLK 423


>gi|356515931|ref|XP_003526650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Glycine max]
          Length = 461

 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 133/420 (31%), Positives = 217/420 (51%), Gaps = 5/420 (1%)

Query: 56  LTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAAR 115
           L   L+   +  +P LV+ ++KR  N  + A  FF        Y+HS  ++   I+  A+
Sbjct: 31  LDTALNQTGVRVSPDLVENVLKRFENAGMPAFRFFEWAEKQRGYSHSIRAYHLMIESLAK 90

Query: 116 LRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS 175
           +R Y+ VW LV  M+   +   + TF I+  +Y  A K D AV  F  M ++    +L +
Sbjct: 91  IRQYQIVWDLVSAMRKKGMLNVE-TFCIMMRKYARANKVDEAVYTFNVMDKYDVVPNLAA 149

Query: 176 FNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235
           FN +L  LCK   V KA  +F   +G+F  D  SY+++  GW       +A EV +EMV+
Sbjct: 150 FNGLLSALCKSNNVRKAQEIFDAMKGQFVPDEKSYSILLEGWGKAPNLPRAREVFREMVE 209

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
            G +P++ TY I++    +AG+++EA     EM    C      Y+ +VH +GV   I+ 
Sbjct: 210 AGCDPDVVTYGIMVDVLCKAGRVDEAVEVVKEMDVGNCRPTSFIYSVLVHTYGVEHRIED 269

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
           A + F  M   G+   V  YNA+I   CK +  +N   V +EM   G  PNS T NV+I 
Sbjct: 270 AIDTFLEMAKKGIKADVVAYNALIGAFCKVNKFKNVHRVLKEMESNGVAPNSRTCNVIIS 329

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
            +   G+ +RA     RM    CEP+  TY ++I+ FC+  E+E  L++++ M S   +P
Sbjct: 330 SMIGQGQTDRAFRVFCRMI-KLCEPDADTYTMMIKMFCEKNELEMALKIWKYMKSKQFVP 388

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
           ++ T++ LI  +    + D+   A  ++ EM+++G  P + TF R+   L+  G + + K
Sbjct: 389 SMHTFSALIKGLC---EKDNAAKACVVMEEMIEKGIRPSRITFGRLRQLLIKEGREDVLK 445


>gi|115455297|ref|NP_001051249.1| Os03g0746400 [Oryza sativa Japonica Group]
 gi|113549720|dbj|BAF13163.1| Os03g0746400, partial [Oryza sativa Japonica Group]
          Length = 613

 Score =  234 bits (597), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 127/435 (29%), Positives = 219/435 (50%), Gaps = 3/435 (0%)

Query: 53  PRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDL 112
           P  +   + C S+  T  LVD+I+ R  N  + A  FF  +     Y H   S+D  +D+
Sbjct: 175 PEAIMIAMDCCSVRVTGCLVDKILTRFSNDWVAAFGFFMWVGTQGGYCHCADSYDLMVDI 234

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
             + + +  +W L+++M  +    +  T   +  R   A +   A+  F  M   G  + 
Sbjct: 235 LGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVKD 294

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
             + N +LD LCKE+ V++A  +F+  RG    D  S+N + +GWC  +   +AL+ ++E
Sbjct: 295 TKAMNVLLDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGWCKARMLKEALDTMEE 354

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M   G +P++ TY  +++ Y      +  +    EM+KR+C  +VVTYT ++H  G  G 
Sbjct: 355 MKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGR 414

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
            + A + FD +   GV P  + YN++I +L +   +E+A  V EEM   G  PN TT+N 
Sbjct: 415 TREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNT 474

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           +I   C   + E AL+ + +M++  C P+++TY  L++  C    ++  L L   M    
Sbjct: 475 LISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKD 534

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
             P+  TY +L+S +    K   +  +   L EMV +GF P++ TF+ V+  L     Q 
Sbjct: 535 ISPDFSTYTLLVSWLCRNGK---VAQSCLFLEEMVSKGFAPKQETFDLVMEKLEKRNLQS 591

Query: 473 LAKEILRLQSRCGRL 487
           + K+I  L+++   L
Sbjct: 592 VYKKIQVLRTQVTNL 606


>gi|108711050|gb|ABF98845.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215693326|dbj|BAG88708.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625789|gb|EEE59921.1| hypothetical protein OsJ_12549 [Oryza sativa Japonica Group]
          Length = 554

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 127/435 (29%), Positives = 219/435 (50%), Gaps = 3/435 (0%)

Query: 53  PRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDL 112
           P  +   + C S+  T  LVD+I+ R  N  + A  FF  +     Y H   S+D  +D+
Sbjct: 116 PEAIMIAMDCCSVRVTGCLVDKILTRFSNDWVAAFGFFMWVGTQGGYCHCADSYDLMVDI 175

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
             + + +  +W L+++M  +    +  T   +  R   A +   A+  F  M   G  + 
Sbjct: 176 LGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVKD 235

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
             + N +LD LCKE+ V++A  +F+  RG    D  S+N + +GWC  +   +AL+ ++E
Sbjct: 236 TKAMNVLLDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGWCKARMLKEALDTMEE 295

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M   G +P++ TY  +++ Y      +  +    EM+KR+C  +VVTYT ++H  G  G 
Sbjct: 296 MKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGR 355

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
            + A + FD +   GV P  + YN++I +L +   +E+A  V EEM   G  PN TT+N 
Sbjct: 356 TREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNT 415

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           +I   C   + E AL+ + +M++  C P+++TY  L++  C    ++  L L   M    
Sbjct: 416 LISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKD 475

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
             P+  TY +L+S +    K   +  +   L EMV +GF P++ TF+ V+  L     Q 
Sbjct: 476 ISPDFSTYTLLVSWLCRNGK---VAQSCLFLEEMVSKGFAPKQETFDLVMEKLEKRNLQS 532

Query: 473 LAKEILRLQSRCGRL 487
           + K+I  L+++   L
Sbjct: 533 VYKKIQVLRTQVTNL 547


>gi|359492357|ref|XP_002284592.2| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Vitis vinifera]
          Length = 476

 Score =  231 bits (590), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 132/445 (29%), Positives = 227/445 (51%), Gaps = 5/445 (1%)

Query: 29  SPAPLPPAAADPAALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALH 88
           S   +    ADP      I+ S     L  +L    +  +P +V+ ++KR  N  + A  
Sbjct: 3   SSGEIIKETADPTKRICKIMISCPKLELDTSLSESGIRVSPIVVENVLKRFENAGMLAYQ 62

Query: 89  FFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERY 148
           FF        Y HS  ++   I+  A++R Y+ +W LV++M+SL +   + TF II  +Y
Sbjct: 63  FFEWAGKQRNYTHSIRAYHTMIESLAKIRQYQIMWDLVNKMRSLKILNVE-TFCIIMRKY 121

Query: 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVI 208
             + K   AV  F  M ++    +L +FN++L  LCK K V KA  +F   + +F  D  
Sbjct: 122 ARSQKVKEAVYTFNIMEKYDVPPNLAAFNSLLSALCKSKNVVKAQEIFNGMKDQFIPDSK 181

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           +Y+++  GW       KA E+ +EMVD G +P++ TY I++    +AG+++EA     EM
Sbjct: 182 TYSILLEGWGKAPNLPKAREIFREMVDMGCDPDIVTYGIMVDILCKAGRVDEAVGIVKEM 241

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
               C+     Y+ +VH +G+   I+ A   F  M    +   VA YNA+I   CK + +
Sbjct: 242 DSSVCKPTSFIYSVLVHTYGIENRIEDAVYTFLDMERNEIEADVAVYNALIGAFCKVNKL 301

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           +NA  V  EM  KG  PNS T N+++  L   G+ + A     RM    C+P+  TY ++
Sbjct: 302 KNAYRVLNEMDCKGIRPNSRTCNIILNSLISCGDTDEAFRVFRRMI-KVCDPDADTYTMM 360

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           I+ FC+  ++E  L++++ M     +P++ T+++LI+ +  +  +    +   LL EM++
Sbjct: 361 IKMFCENDKLEMALKVWKYMRLKQFVPSMHTFSVLINGLCKKGNASKACI---LLEEMIE 417

Query: 449 RGFMPRKFTFNRVLNGLLLIGNQGL 473
           +G  P   TF ++   L+  G + +
Sbjct: 418 KGIRPSSVTFGKLKQLLIKEGREDV 442


>gi|21686921|gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1833

 Score =  231 bits (590), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 126/435 (28%), Positives = 220/435 (50%), Gaps = 3/435 (0%)

Query: 53   PRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDL 112
            P  +   + C S+  T  LVD+I+ R  N  + A  FF  +     Y H   S+D  +D+
Sbjct: 1395 PEAIMIAMDCCSVRVTGCLVDKILTRFSNDWVAAFGFFMWVGTQGGYCHCADSYDLMVDI 1454

Query: 113  AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
              + + +  +W L+++M  +    +  T   +  R   A +   A+  F  M   G  + 
Sbjct: 1455 LGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVKD 1514

Query: 173  LNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
              + N +LD LCKE+ V++A  +F+  RG    D  S+N + +GWC  +   +AL+ ++E
Sbjct: 1515 TKAMNVLLDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGWCKARMLKEALDTMEE 1574

Query: 233  MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
            M   G +P++ TY  +++ Y      +  +    EM+KR+C  +VVTYT ++H  G  G 
Sbjct: 1575 MKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGR 1634

Query: 293  IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
             + A + FD +   GV P  + YN++I +L +   +E+A  V EEM   G  PN TT+N 
Sbjct: 1635 TREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNT 1694

Query: 353  VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
            +I   C   + E AL+ + +M++  C P+++TY  L++  C    ++  L L   M    
Sbjct: 1695 LISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKD 1754

Query: 413  CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
              P+  TY +L+S +    ++  +  +   L EMV +GF P++ TF+ V+  L     Q 
Sbjct: 1755 ISPDFSTYTLLVSWLC---RNGKVAQSCLFLEEMVSKGFAPKQETFDLVMEKLEKRNLQS 1811

Query: 473  LAKEILRLQSRCGRL 487
            + K+I  L+++   L
Sbjct: 1812 VYKKIQVLRTQVTNL 1826


>gi|218193742|gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
          Length = 1874

 Score =  231 bits (589), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 126/435 (28%), Positives = 220/435 (50%), Gaps = 3/435 (0%)

Query: 53   PRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDL 112
            P  +   + C S+  T  LVD+I+ R  N  + A  FF  +     Y H   S+D  +D+
Sbjct: 1436 PEAIMIAMDCCSVRVTGCLVDKILTRFSNDWVAAFGFFMWVGTQGGYCHCADSYDLMVDI 1495

Query: 113  AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
              + + +  +W L+++M  +    +  T   +  R   A +   A+  F  M   G  + 
Sbjct: 1496 LGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVKD 1555

Query: 173  LNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
              + N +LD LCKE+ V++A  +F+  RG    D  S+N + +GWC  +   +AL+ ++E
Sbjct: 1556 TKAMNVLLDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGWCKARMLKEALDTMEE 1615

Query: 233  MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
            M   G +P++ TY  +++ Y      +  +    EM+KR+C  +VVTYT ++H  G  G 
Sbjct: 1616 MKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGR 1675

Query: 293  IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
             + A + FD +   GV P  + YN++I +L +   +E+A  V EEM   G  PN TT+N 
Sbjct: 1676 TREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNT 1735

Query: 353  VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
            +I   C   + E AL+ + +M++  C P+++TY  L++  C    ++  L L   M    
Sbjct: 1736 LISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKD 1795

Query: 413  CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
              P+  TY +L+S +    ++  +  +   L EMV +GF P++ TF+ V+  L     Q 
Sbjct: 1796 ISPDFSTYTLLVSWLC---RNGKVAQSCLFLEEMVSKGFAPKQETFDLVMEKLEKRNLQS 1852

Query: 473  LAKEILRLQSRCGRL 487
            + K+I  L+++   L
Sbjct: 1853 VYKKIQVLRTQVTNL 1867


>gi|255558584|ref|XP_002520317.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540536|gb|EEF42103.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 439

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 130/426 (30%), Positives = 221/426 (51%), Gaps = 5/426 (1%)

Query: 48  LTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFD 107
           + S+   TL   L    +  +P++V+ +++R  N  + A  FF        Y HS  ++ 
Sbjct: 1   MMSSPAVTLHTALDQNGIRVSPEIVEDVLRRFENAGMVAYRFFEWAEKQLHYTHSVRAYH 60

Query: 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH 167
             I+  A++R Y+ +W L++ MK   +   + TF II  +Y  A K + AV  F  M ++
Sbjct: 61  TMIESLAKIRQYQIMWDLINAMKRKRMLNVE-TFCIIMRKYARAQKLEEAVYTFNVMEKY 119

Query: 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKAL 227
               +L +FN +   LCK K V KA  +F   + +F  D  +Y ++  GW       KA 
Sbjct: 120 DVPPNLAAFNGLFSALCKSKNVRKAQEIFDSSKDRFVPDSKTYTILLEGWGKTPNLPKAR 179

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
           E+ +EMVD G +P++ TY I++    +AG+++EA     EM    C+     Y+ ++H +
Sbjct: 180 EIFREMVDVGCSPDIVTYGIMVDILCKAGRVDEALDIVKEMDLTICKPTSFIYSVLIHTY 239

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
           G+   I+ A + F GM   GV   VA YNA+I   CK +  +N   V  EM  KG  PNS
Sbjct: 240 GIENRIEDAVDTFLGMEKNGVKADVAAYNALIGAFCKVNKFKNVYRVLNEMDYKGMQPNS 299

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
            T N+++  L   GE + A     RM    CEP+  TY ++I+ FC+  E+E  L++++ 
Sbjct: 300 RTLNIILNNLIARGETDEAFRVFRRMI-KVCEPDADTYTMMIKMFCERNELEMALKVWKY 358

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467
           M     +P++ T+++LI+ +    +  D+  A  +L +M+++G  P   TF R+ + L+ 
Sbjct: 359 MKKKHFVPSMHTFSVLINGLC---EEGDVSHACVMLEDMIEKGIRPSGVTFGRLRHLLIK 415

Query: 468 IGNQGL 473
            G + +
Sbjct: 416 EGREDV 421



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 122/271 (45%), Gaps = 34/271 (12%)

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           ++  Y+ +++   +  Q +  W     MK+++  ++V T+  I+  +    +++ A   F
Sbjct: 55  SVRAYHTMIESLAKIRQYQIMWDLINAMKRKRM-LNVETFCIIMRKYARAQKLEEAVYTF 113

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           + M    V P++A +N +   LCK  +V  A  +F+    + ++P+S TY +++ G   T
Sbjct: 114 NVMEKYDVPPNLAAFNGLFSALCKSKNVRKAQEIFDSSKDR-FVPDSKTYTILLEGWGKT 172

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
             + +A E    M D  C P++ TY I++   C AG ++  L++ ++M   +C P    Y
Sbjct: 173 PNLPKAREIFREMVDVGCSPDIVTYGIMVDILCKAGRVDEALDIVKEMDLTICKPTSFIY 232

Query: 421 NILISSMFVRKKSDDLL--------------VAG------------------KLLIEMVD 448
           ++LI +  +  + +D +              VA                   ++L EM  
Sbjct: 233 SVLIHTYGIENRIEDAVDTFLGMEKNGVKADVAAYNALIGAFCKVNKFKNVYRVLNEMDY 292

Query: 449 RGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           +G  P   T N +LN L+  G    A  + R
Sbjct: 293 KGMQPNSRTLNIILNNLIARGETDEAFRVFR 323


>gi|449463418|ref|XP_004149431.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
 gi|449499065|ref|XP_004160711.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
          Length = 439

 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 129/421 (30%), Positives = 222/421 (52%), Gaps = 5/421 (1%)

Query: 55  TLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAA 114
            L   L    +  +P++ + +++R  N  + A  FF   S    Y HS  ++   I+  A
Sbjct: 8   ALETALDQTGIRISPEIAEPVLRRFENAGMLAYRFFEWASKQRNYVHSVRAYHSMIESLA 67

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           ++R Y+ VW LV+ M++  +   +  F II  +Y  A K + AV  F  M ++  + ++ 
Sbjct: 68  KIRQYQMVWDLVNAMRNKEILNVE-AFCIIMRKYARAQKVEEAVYTFNVMEKYNMKPNVA 126

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           +FN +L  LCK K V KA  +F   + +F  D  +Y+++  GW       KA E+ +EM+
Sbjct: 127 AFNGLLSALCKSKNVRKAQEIFDNMKDQFVPDSKTYSILIEGWGRAPNLPKAREIYREMI 186

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
           D G  P+  TY+I++    +AG+++EA     EM    C+     Y+ +VH +GV   I+
Sbjct: 187 DSGCIPDEVTYSIMVDVLCKAGRVDEAVEIVKEMDYNNCKPSSFIYSVLVHTYGVENRIE 246

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
            A + F  M   GV+  VA YNA+I   CK + ++N   V ++M  KG  PNS T N++I
Sbjct: 247 DAVSTFLEMERNGVMADVAAYNALISAFCKANKMKNVYRVLKDMDLKGVNPNSRTCNIII 306

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
             L   GE + A +   RM    CEP+V +Y ++I+ FC   E++  L++++ M     +
Sbjct: 307 NSLIGRGETDEAFKIFRRMI-KVCEPDVDSYTMIIKMFCGRKELDMALKIWKYMKKKQFV 365

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           P++ T+++LI+ +    +  +   A  LL EM+++G  P   TF R+ + L+  G + + 
Sbjct: 366 PSMHTFSVLINGLC---QIGNATQACVLLEEMIEKGIRPSGATFGRLRHLLIKEGRKDVL 422

Query: 475 K 475
           K
Sbjct: 423 K 423



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 82/169 (48%), Gaps = 5/169 (2%)

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           SV  Y++MI+ L K    +    +   M  K  + N   + +++R      ++E A+   
Sbjct: 55  SVRAYHSMIESLAKIRQYQMVWDLVNAMRNKEIL-NVEAFCIIMRKYARAQKVEEAVYTF 113

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
             M+    +PNV  +N L+   C +  + +  E+F+ M     +P+  TY+ILI      
Sbjct: 114 NVMEKYNMKPNVAAFNGLLSALCKSKNVRKAQEIFDNMKDQF-VPDSKTYSILIEGW--- 169

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
            ++ +L  A ++  EM+D G +P + T++ +++ L   G    A EI++
Sbjct: 170 GRAPNLPKAREIYREMIDSGCIPDEVTYSIMVDVLCKAGRVDEAVEIVK 218


>gi|115455503|ref|NP_001051352.1| Os03g0761300 [Oryza sativa Japonica Group]
 gi|14488357|gb|AAK63924.1|AC084282_5 unknown protein [Oryza sativa Japonica Group]
 gi|108711214|gb|ABF99009.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549823|dbj|BAF13266.1| Os03g0761300 [Oryza sativa Japonica Group]
 gi|125545804|gb|EAY91943.1| hypothetical protein OsI_13630 [Oryza sativa Indica Group]
 gi|125588003|gb|EAZ28667.1| hypothetical protein OsJ_12678 [Oryza sativa Japonica Group]
          Length = 484

 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 132/439 (30%), Positives = 222/439 (50%), Gaps = 8/439 (1%)

Query: 38  ADPAA-LASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYH 96
           ADPA  L  LI++      +   L    +  TP + +++++RL N  + A  FF      
Sbjct: 33  ADPAKRLFKLIISCRKASAVEHELDHSGVRVTPDVAERVLERLDNAGMLAYRFFEWARRQ 92

Query: 97  PT--YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKA 154
                AH+  S+   +   A++R Y+ +W +V  M+        +TF II  +Y  A K 
Sbjct: 93  KRGGCAHTVRSYHTVVASLAKIRQYQLMWDVVAVMRREG-AVNVETFGIIMRKYARAQKV 151

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIA 214
           D AV  F  M ++G   +L +FN++L  LCK K V KA  +F     +F  D  +Y+++ 
Sbjct: 152 DEAVYTFNVMEKYGVVPNLAAFNSLLGALCKSKNVRKAQEIFDKMNSRFSPDAKTYSILL 211

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
            GW       K  EV  EM+D G  P++ TY I++    + G++EEA R   +M  R C+
Sbjct: 212 EGWGRAPNLPKMREVYSEMLDAGCEPDIVTYGIMVDSLCKTGRVEEAVRVVQDMTSRGCQ 271

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
                Y+ +VH +GV   I+ A   F  M   G++P +  YNA++   CK    ENA  V
Sbjct: 272 PTTYIYSVLVHTYGVEMRIEDAVATFLDMEKDGIVPDIVVYNALVSAFCKAKKFENAFRV 331

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
             +M G G   NS T+N+++  L   G  + A +   RM    C+P+  TY ++I+ FC+
Sbjct: 332 LNDMEGHGITTNSRTWNIILNHLISLGRDDEAYKVFRRMIKC-CQPDCDTYTMMIKMFCE 390

Query: 395 AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
             ++E  L++++ M     LP++ T+++LI+ +  +++     V   LL +M+++G  P 
Sbjct: 391 NDKVEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKREVSQACV---LLEDMIEKGIRPP 447

Query: 455 KFTFNRVLNGLLLIGNQGL 473
             TF ++   LL  G + +
Sbjct: 448 GSTFGKLRQLLLKEGRKDV 466



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 135/285 (47%), Gaps = 5/285 (1%)

Query: 200 RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
           RG     V SY+ +      +++     +V+  M   G   N+ T+ I+++ Y RA +++
Sbjct: 94  RGGCAHTVRSYHTVVASLAKIRQYQLMWDVVAVMRREGA-VNVETFGIIMRKYARAQKVD 152

Query: 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319
           EA   F  M+K     ++  + +++        +++A+ +FD M N    P   TY+ ++
Sbjct: 153 EAVYTFNVMEKYGVVPNLAAFNSLLGALCKSKNVRKAQEIFDKM-NSRFSPDAKTYSILL 211

Query: 320 QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
           +   +  ++     V+ EM+  G  P+  TY +++  LC TG +E A+  V  M    C+
Sbjct: 212 EGWGRAPNLPKMREVYSEMLDAGCEPDIVTYGIMVDSLCKTGRVEEAVRVVQDMTSRGCQ 271

Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA 439
           P    Y++L+  +     IE  +  F  M     +P++  YN L+S+    KK ++   A
Sbjct: 272 PTTYIYSVLVHTYGVEMRIEDAVATFLDMEKDGIVPDIVVYNALVSAFCKAKKFEN---A 328

Query: 440 GKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484
            ++L +M   G      T+N +LN L+ +G    A ++ R   +C
Sbjct: 329 FRVLNDMEGHGITTNSRTWNIILNHLISLGRDDEAYKVFRRMIKC 373



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 156/357 (43%), Gaps = 58/357 (16%)

Query: 75  IIKRLWNHALK---ALHFFNILSYHPTYAHSP--SSFDHAIDLAARLRDYRTVWTLVHRM 129
           II R +  A K   A++ FN++     Y   P  ++F+  +    + ++ R    +  +M
Sbjct: 140 IIMRKYARAQKVDEAVYTFNVME---KYGVVPNLAAFNSLLGALCKSKNVRKAQEIFDKM 196

Query: 130 KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV 189
            S    P  KT++I+ E +  A    +  +++  M + GC   + ++  ++D LCK  +V
Sbjct: 197 NS-RFSPDAKTYSILLEGWGRAPNLPKMREVYSEMLDAGCEPDIVTYGIMVDSLCKTGRV 255

Query: 190 EKAYNLFKVFRGK------------------------------------FKADVISYNVI 213
           E+A  + +    +                                       D++ YN +
Sbjct: 256 EEAVRVVQDMTSRGCQPTTYIYSVLVHTYGVEMRIEDAVATFLDMEKDGIVPDIVVYNAL 315

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
            + +C  K+   A  VL +M   G+  N  T+NI+L      G+ +EA++ F  M K  C
Sbjct: 316 VSAFCKAKKFENAFRVLNDMEGHGITTNSRTWNIILNHLISLGRDDEAYKVFRRMIK-CC 374

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
           + D  TYT ++  F    +++ A  V+  M     LPS+ T++ +I  LC K  V  A +
Sbjct: 375 QPDCDTYTMMIKMFCENDKVEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKREVSQACV 434

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           + E+M+ KG  P  +T+  + + L   G  +  L+F+           V+  NILI+
Sbjct: 435 LLEDMIEKGIRPPGSTFGKLRQLLLKEGRKD-VLDFL-----------VEKMNILIQ 479


>gi|357114607|ref|XP_003559090.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Brachypodium distachyon]
          Length = 486

 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 134/438 (30%), Positives = 221/438 (50%), Gaps = 8/438 (1%)

Query: 39  DPAA-LASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHP 97
           DPA  L  LI++      L   L    L  TP + +++++RL N  + A  FF       
Sbjct: 36  DPAKRLCKLIISCQKASGLELELDHSDLRVTPDVAERVLERLDNAGMLAYRFFEWARKQK 95

Query: 98  TYA--HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKAD 155
                H+  S+   +   A++R Y+ +W +V  M+   +   + TF II  +Y  A K D
Sbjct: 96  RGGCNHTIRSYHTVVASLAKIRQYQLMWDVVAIMRREGVVNVE-TFGIIMRKYARAQKFD 154

Query: 156 RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIAN 215
            AV  F  M ++G   +L +FN++L  LCK K V KA  +F    G+F  D  +Y+++  
Sbjct: 155 EAVYTFNIMEKYGVVPNLAAFNSLLGALCKSKNVRKAQEIFDKMNGRFNPDAKTYSILLE 214

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
           GW       K  EV  EM+D G  P++ TY I++    + G++EEA     +M  R C+ 
Sbjct: 215 GWGKAPNLPKMREVYSEMLDAGCQPDIVTYGIMVDSLCKTGRVEEAVLVVQDMSSRGCQP 274

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
               Y+ +VH +GV   I+ A   F  M   G++P V  YNA++   CK    ENA  V 
Sbjct: 275 TTFIYSVLVHTYGVEMRIEDAVATFLDMEKDGIVPDVVVYNALVTAFCKVKKFENAFRVM 334

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
           ++M G G  PNS T+N+++  L   G+ + A     RM    C+P+  TY ++I+ FC+ 
Sbjct: 335 DDMEGHGIAPNSRTWNIILNKLISLGKDDEAYRVFRRMI-KRCQPDSDTYTMMIKMFCEN 393

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
             +E  L++++ M     LP++ T+++LI+ +  + +     V   LL +M+++G  P  
Sbjct: 394 DNVEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACV---LLEDMIEKGIRPPG 450

Query: 456 FTFNRVLNGLLLIGNQGL 473
            TF ++   LL  G + +
Sbjct: 451 STFGKLRQLLLKEGRKDV 468



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 152/342 (44%), Gaps = 48/342 (14%)

Query: 75  IIKRLWNHALK---ALHFFNILSYHPTYAHSP--SSFDHAIDLAARLRDYRTVWTLVHRM 129
           II R +  A K   A++ FNI+     Y   P  ++F+  +    + ++ R    +  +M
Sbjct: 142 IIMRKYARAQKFDEAVYTFNIME---KYGVVPNLAAFNSLLGALCKSKNVRKAQEIFDKM 198

Query: 130 KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV 189
                 P  KT++I+ E +  A    +  +++  M + GC+  + ++  ++D LCK  +V
Sbjct: 199 NG-RFNPDAKTYSILLEGWGKAPNLPKMREVYSEMLDAGCQPDIVTYGIMVDSLCKTGRV 257

Query: 190 EKAY------------------------------------NLFKVFRGKFKADVISYNVI 213
           E+A                                         + +     DV+ YN +
Sbjct: 258 EEAVLVVQDMSSRGCQPTTFIYSVLVHTYGVEMRIEDAVATFLDMEKDGIVPDVVVYNAL 317

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
              +C VK+   A  V+ +M   G+ PN  T+NI+L      G+ +EA+R F  M KR C
Sbjct: 318 VTAFCKVKKFENAFRVMDDMEGHGIAPNSRTWNIILNKLISLGKDDEAYRVFRRMIKR-C 376

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
           + D  TYT ++  F     ++ A  V+  M     LPS+ T++ +I  LC K  V  A +
Sbjct: 377 QPDSDTYTMMIKMFCENDNVEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACV 436

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF-VGRMK 374
           + E+M+ KG  P  +T+  + + L   G  +  LEF V +MK
Sbjct: 437 LLEDMIEKGIRPPGSTFGKLRQLLLKEGRKD-VLEFLVDKMK 477



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 141/298 (47%), Gaps = 10/298 (3%)

Query: 192 AYNLF----KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           AY  F    K  RG     + SY+ +      +++     +V+  M   G+  N+ T+ I
Sbjct: 84  AYRFFEWARKQKRGGCNHTIRSYHTVVASLAKIRQYQLMWDVVAIMRREGV-VNVETFGI 142

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           +++ Y RA + +EA   F  M+K     ++  + +++        +++A+ +FD M NG 
Sbjct: 143 IMRKYARAQKFDEAVYTFNIMEKYGVVPNLAAFNSLLGALCKSKNVRKAQEIFDKM-NGR 201

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
             P   TY+ +++   K  ++     V+ EM+  G  P+  TY +++  LC TG +E A+
Sbjct: 202 FNPDAKTYSILLEGWGKAPNLPKMREVYSEMLDAGCQPDIVTYGIMVDSLCKTGRVEEAV 261

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
             V  M    C+P    Y++L+  +     IE  +  F  M     +P++  YN L+++ 
Sbjct: 262 LVVQDMSSRGCQPTTFIYSVLVHTYGVEMRIEDAVATFLDMEKDGIVPDVVVYNALVTAF 321

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL-RLQSRC 484
              KK ++   A +++ +M   G  P   T+N +LN L+ +G    A  +  R+  RC
Sbjct: 322 CKVKKFEN---AFRVMDDMEGHGIAPNSRTWNIILNKLISLGKDDEAYRVFRRMIKRC 376



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 84/186 (45%), Gaps = 5/186 (2%)

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
           GG   ++ +Y+ ++  L K    +    V   M  +G + N  T+ +++R      + + 
Sbjct: 97  GGCNHTIRSYHTVVASLAKIRQYQLMWDVVAIMRREGVV-NVETFGIIMRKYARAQKFDE 155

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           A+     M+     PN+  +N L+   C +  + +  E+F+KM +G   P+  TY+IL+ 
Sbjct: 156 AVYTFNIMEKYGVVPNLAAFNSLLGALCKSKNVRKAQEIFDKM-NGRFNPDAKTYSILLE 214

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
                 K+ +L    ++  EM+D G  P   T+  +++ L   G    A  +++  S  G
Sbjct: 215 GW---GKAPNLPKMREVYSEMLDAGCQPDIVTYGIMVDSLCKTGRVEEAVLVVQDMSSRG 271

Query: 486 RLPRQF 491
             P  F
Sbjct: 272 CQPTTF 277


>gi|326520119|dbj|BAK03984.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 485

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 134/441 (30%), Positives = 224/441 (50%), Gaps = 9/441 (2%)

Query: 37  AADPAA-LASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSY 95
           A DPA  L  LI++      L   L    L  TP + +++++RL N  + A  FF     
Sbjct: 32  AFDPAKRLCKLIISCRQASGLEIELDHSDLRVTPDVAERVLERLDNAGMLAYRFFEWARK 91

Query: 96  H---PTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAG 152
                  AH+  SF   +   A++R Y+ +W +V  M+   +   + TF II  +Y  A 
Sbjct: 92  QRRGGGCAHTVRSFHTVVASLAKIRQYQLMWDVVAIMRRQGVVNVE-TFGIIMRKYARAQ 150

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNV 212
           K D AV  F  M ++G   +L +FN++L  LCK K V KA  +F+   G+F  D  +Y++
Sbjct: 151 KVDEAVYTFNVMEKYGVVPNLAAFNSLLCALCKSKNVRKAQEIFEQMNGRFSPDAKTYSI 210

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           +  GW       K  +V  +M+D G  P++ TY I++    + G++EEA     +M  R 
Sbjct: 211 LLEGWGRAPNLPKMRKVYSDMLDAGCQPDIVTYGIMVDSLCKTGRVEEAVFVVQDMTSRG 270

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
           C+     Y+ +VH +GV   I+ A   F  M   G++P V  YNA++   CK    +NA 
Sbjct: 271 CQPTTFIYSVLVHTYGVEMRIEDAVATFLDMQKDGIVPDVVVYNALVTAFCKVKKFDNAF 330

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
            V ++M G G  PNS T+N+++  L   G+ + A     RM    C+P+  TY ++I+ F
Sbjct: 331 RVMDDMEGHGITPNSRTWNIILNKLISLGKDDEAYRVFRRMI-KRCQPDSDTYTMMIKMF 389

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
           C+   +E  L++++ M     LP++ T+++LI+ +  + +     V   LL +M+++G  
Sbjct: 390 CENDRLEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACV---LLEDMIEKGIR 446

Query: 453 PRKFTFNRVLNGLLLIGNQGL 473
           P   TF ++   LL  G + +
Sbjct: 447 PPGSTFGKLRQLLLKEGRKDV 467



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 153/342 (44%), Gaps = 48/342 (14%)

Query: 75  IIKRLWNHALK---ALHFFNILSYHPTYAHSP--SSFDHAIDLAARLRDYRTVWTLVHRM 129
           II R +  A K   A++ FN++     Y   P  ++F+  +    + ++ R    +  +M
Sbjct: 141 IIMRKYARAQKVDEAVYTFNVME---KYGVVPNLAAFNSLLCALCKSKNVRKAQEIFEQM 197

Query: 130 KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV 189
                 P  KT++I+ E +  A    +  K++  M + GC+  + ++  ++D LCK  +V
Sbjct: 198 NG-RFSPDAKTYSILLEGWGRAPNLPKMRKVYSDMLDAGCQPDIVTYGIMVDSLCKTGRV 256

Query: 190 EKAY------------------------------------NLFKVFRGKFKADVISYNVI 213
           E+A                                         + +     DV+ YN +
Sbjct: 257 EEAVFVVQDMTSRGCQPTTFIYSVLVHTYGVEMRIEDAVATFLDMQKDGIVPDVVVYNAL 316

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
              +C VK+ + A  V+ +M   G+ PN  T+NI+L      G+ +EA+R F  M KR C
Sbjct: 317 VTAFCKVKKFDNAFRVMDDMEGHGITPNSRTWNIILNKLISLGKDDEAYRVFRRMIKR-C 375

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
           + D  TYT ++  F     ++ A  V+  M     LPS+ T++ +I  LC K  V  A +
Sbjct: 376 QPDSDTYTMMIKMFCENDRLEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACV 435

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF-VGRMK 374
           + E+M+ KG  P  +T+  + + L   G  +  LEF V +MK
Sbjct: 436 LLEDMIEKGIRPPGSTFGKLRQLLLKEGRKD-VLEFLVDKMK 476



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 143/299 (47%), Gaps = 11/299 (3%)

Query: 192 AYNLFKVFR-----GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
           AY  F+  R     G     V S++ +      +++     +V+  M  +G+  N+ T+ 
Sbjct: 82  AYRFFEWARKQRRGGGCAHTVRSFHTVVASLAKIRQYQLMWDVVAIMRRQGV-VNVETFG 140

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
           I+++ Y RA +++EA   F  M+K     ++  + +++        +++A+ +F+ M NG
Sbjct: 141 IIMRKYARAQKVDEAVYTFNVMEKYGVVPNLAAFNSLLCALCKSKNVRKAQEIFEQM-NG 199

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
              P   TY+ +++   +  ++     V+ +M+  G  P+  TY +++  LC TG +E A
Sbjct: 200 RFSPDAKTYSILLEGWGRAPNLPKMRKVYSDMLDAGCQPDIVTYGIMVDSLCKTGRVEEA 259

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
           +  V  M    C+P    Y++L+  +     IE  +  F  M     +P++  YN L+++
Sbjct: 260 VFVVQDMTSRGCQPTTFIYSVLVHTYGVEMRIEDAVATFLDMQKDGIVPDVVVYNALVTA 319

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL-RLQSRC 484
               KK D+   A +++ +M   G  P   T+N +LN L+ +G    A  +  R+  RC
Sbjct: 320 FCKVKKFDN---AFRVMDDMEGHGITPNSRTWNIILNKLISLGKDDEAYRVFRRMIKRC 375


>gi|11079489|gb|AAG29201.1|AC078898_11 hypothetical protein [Arabidopsis thaliana]
          Length = 481

 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 133/456 (29%), Positives = 227/456 (49%), Gaps = 6/456 (1%)

Query: 11  NHLHFFCIYRGLSPLTTTSPAPLPPAAADPAALASLILTSTDPRTLTQTLHCPSLHWTPQ 70
           N    FC    LS    +S   +   A D A   S +L S+    L   L    L  + +
Sbjct: 7   NRQSRFCCKSFLSARLYSSSEQVRDVA-DVAKNISKVLMSSPQLVLDSALDQSGLRVSQE 65

Query: 71  LVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMK 130
           +V+ ++ R  N  L    FF        Y HS  ++   I+  A++R Y+ +W L++ M+
Sbjct: 66  VVEDVLNRFRNAGLLTYRFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMR 125

Query: 131 SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190
              +   + TF I+  +Y  A K D A+  F  M ++    +L +FN +L  LCK K V 
Sbjct: 126 KKKMLNVE-TFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVR 184

Query: 191 KAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250
           KA  +F+  R +F  D  +Y+++  GW       KA EV +EM+D G +P++ TY+I++ 
Sbjct: 185 KAQEVFENMRDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVD 244

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
              +AG+++EA      M    C+     Y+ +VH +G    ++ A + F  M   G+  
Sbjct: 245 ILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKA 304

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
            VA +N++I   CK + ++N   V +EM  KG  PNS + N+++R L   GE + A +  
Sbjct: 305 DVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVF 364

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
            +M    CEP+  TY ++I+ FC+  E+E   ++++ M      P++ T+++LI+ +   
Sbjct: 365 RKMI-KVCEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEE 423

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
           + +    V   LL EM++ G  P   TF R+   L+
Sbjct: 424 RTTQKACV---LLEEMIEMGIRPSGVTFGRLRQLLI 456



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 107/248 (43%), Gaps = 38/248 (15%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           +V  M      PT   ++++   Y +  + + AV  FL M   G +  +  FN+++   C
Sbjct: 258 IVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFC 317

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  +++  Y + K  + K    +  S N+I          ++A +V ++M+ +   P+  
Sbjct: 318 KANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMI-KVCEPDAD 376

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY +V+K +    ++E A + +  M+K+                                
Sbjct: 377 TYTMVIKMFCEKKEMETADKVWKYMRKK-------------------------------- 404

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              GV PS+ T++ +I  LC++ + + A ++ EEM+  G  P+  T+   +R L    E 
Sbjct: 405 ---GVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTFG-RLRQLLIKEER 460

Query: 364 ERALEFVG 371
           E  L+F+ 
Sbjct: 461 EDVLKFLN 468



 Score = 46.6 bits (109), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 79/171 (46%), Gaps = 9/171 (5%)

Query: 311 SVATYNAMIQVLCKKDSVENAILVFE--EMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
           SV  Y+ MI+   K   +    L+++    + K  M N  T+ +V+R      +++ A+ 
Sbjct: 97  SVRAYHMMIESTAK---IRQYKLMWDLINAMRKKKMLNVETFCIVMRKYARAQKVDEAIY 153

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
               M+  +  PN+  +N L+   C +  + +  E+FE M      P+  TY+IL+    
Sbjct: 154 AFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMRDRFT-PDSKTYSILLEGW- 211

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
              K  +L  A ++  EM+D G  P   T++ +++ L   G    A  I+R
Sbjct: 212 --GKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVR 260


>gi|334183972|ref|NP_177860.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806398|sp|Q9FVX2.2|PP129_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g77360, mitochondrial; Flags: Precursor
 gi|332197848|gb|AEE35969.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 517

 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 133/456 (29%), Positives = 227/456 (49%), Gaps = 6/456 (1%)

Query: 11  NHLHFFCIYRGLSPLTTTSPAPLPPAAADPAALASLILTSTDPRTLTQTLHCPSLHWTPQ 70
           N    FC    LS    +S   +   A D A   S +L S+    L   L    L  + +
Sbjct: 43  NRQSRFCCKSFLSARLYSSSEQVRDVA-DVAKNISKVLMSSPQLVLDSALDQSGLRVSQE 101

Query: 71  LVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMK 130
           +V+ ++ R  N  L    FF        Y HS  ++   I+  A++R Y+ +W L++ M+
Sbjct: 102 VVEDVLNRFRNAGLLTYRFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMR 161

Query: 131 SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190
              +   + TF I+  +Y  A K D A+  F  M ++    +L +FN +L  LCK K V 
Sbjct: 162 KKKMLNVE-TFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVR 220

Query: 191 KAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250
           KA  +F+  R +F  D  +Y+++  GW       KA EV +EM+D G +P++ TY+I++ 
Sbjct: 221 KAQEVFENMRDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVD 280

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
              +AG+++EA      M    C+     Y+ +VH +G    ++ A + F  M   G+  
Sbjct: 281 ILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKA 340

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
            VA +N++I   CK + ++N   V +EM  KG  PNS + N+++R L   GE + A +  
Sbjct: 341 DVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVF 400

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
            +M    CEP+  TY ++I+ FC+  E+E   ++++ M      P++ T+++LI+ +   
Sbjct: 401 RKMI-KVCEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEE 459

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
           + +    V   LL EM++ G  P   TF R+   L+
Sbjct: 460 RTTQKACV---LLEEMIEMGIRPSGVTFGRLRQLLI 492



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 107/248 (43%), Gaps = 38/248 (15%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           +V  M      PT   ++++   Y +  + + AV  FL M   G +  +  FN+++   C
Sbjct: 294 IVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFC 353

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  +++  Y + K  + K    +  S N+I          ++A +V ++M+ +   P+  
Sbjct: 354 KANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMI-KVCEPDAD 412

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY +V+K +    ++E A + +  M+K+                                
Sbjct: 413 TYTMVIKMFCEKKEMETADKVWKYMRKK-------------------------------- 440

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              GV PS+ T++ +I  LC++ + + A ++ EEM+  G  P+  T+   +R L    E 
Sbjct: 441 ---GVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTFG-RLRQLLIKEER 496

Query: 364 ERALEFVG 371
           E  L+F+ 
Sbjct: 497 EDVLKFLN 504



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 79/171 (46%), Gaps = 9/171 (5%)

Query: 311 SVATYNAMIQVLCKKDSVENAILVFE--EMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
           SV  Y+ MI+   K   +    L+++    + K  M N  T+ +V+R      +++ A+ 
Sbjct: 133 SVRAYHMMIESTAK---IRQYKLMWDLINAMRKKKMLNVETFCIVMRKYARAQKVDEAIY 189

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
               M+  +  PN+  +N L+   C +  + +  E+FE M      P+  TY+IL+    
Sbjct: 190 AFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMRDRFT-PDSKTYSILLEGW- 247

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
              K  +L  A ++  EM+D G  P   T++ +++ L   G    A  I+R
Sbjct: 248 --GKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVR 296


>gi|225424178|ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial [Vitis vinifera]
          Length = 531

 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 133/450 (29%), Positives = 230/450 (51%), Gaps = 7/450 (1%)

Query: 26  TTTSPAPLPPAAADPAALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALK 85
           T T+ A     A D   L  L+ T ++  ++   L+  S+  +P LV +++K+L N  + 
Sbjct: 69  TETTDATNHHIAQDTGKLCKLLCTHSNS-SIESLLNGASVDVSPTLVLEVLKKLSNSGVI 127

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           AL FF        + +S  +++  I+   +++ ++ +W LV+ M+S  L  TQ+TFA+I+
Sbjct: 128 ALSFFRWAEKQKGFKYSTENYNALIEALGKIKQFKMIWNLVNDMRSKGL-LTQETFALIS 186

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFK 204
            RY  A K   AV+ F  M + G +  L+ FN +LD LCK + VE+A  +F   +  KF+
Sbjct: 187 RRYARARKVKEAVETFEKMEKFGLQPVLSDFNRLLDALCKSRHVERAQEVFDKMKDRKFR 246

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
            D+ SY ++  GW   +   +  EV +EM D G  P+  TY I++  + +A + + A   
Sbjct: 247 PDIKSYTILLEGWGQEQNLLRLDEVYREMKDEGFEPDAVTYGILINAHCKARRYDAAVEL 306

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
           F +M+  KC      Y T+++G G    +  A   F+     G  P   TYNA++   C+
Sbjct: 307 FHKMEANKCMPTPHIYCTLINGLGSERRLTEALQFFERSKASGFTPEAPTYNAVVGSYCQ 366

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE-FVGRMKDDECEPNVQ 383
              +++A  + +EM   G  P + TY++++  L      + A   F G   +  CEP+V 
Sbjct: 367 SMRMDDAYRIVDEMRKCGVGPQTRTYDIILHHLIKARRTKEAYRVFQGMSSEPGCEPSVS 426

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
           TY I++R FC+   ++  L ++++M +   LP +  ++ LI+S+    K D+   A K  
Sbjct: 427 TYEIVVRMFCNEERVDMALRVWDEMKAKGVLPGMHMFSTLINSLCYENKLDE---ACKYF 483

Query: 444 IEMVDRGFMPRKFTFNRVLNGLLLIGNQGL 473
            EM+D G  P    F+ +   LL  G Q +
Sbjct: 484 HEMLDMGIRPPAAMFSNLKQTLLDEGKQDM 513


>gi|297842515|ref|XP_002889139.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297334980|gb|EFH65398.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 482

 Score =  224 bits (572), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 130/429 (30%), Positives = 218/429 (50%), Gaps = 5/429 (1%)

Query: 38  ADPAALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHP 97
           AD A   S +L S+    +   L    L  +P++V+ ++ R  N  L A  FF       
Sbjct: 34  ADVAKNISKVLMSSPQLVIDSALDQSGLRVSPEVVEDVLYRFRNAGLLAYRFFQWSEKQR 93

Query: 98  TYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRA 157
            Y HS  ++   I+  A++R Y+ +W L++ M    +   + TF I+  +Y  A K D A
Sbjct: 94  HYEHSVRAYHMMIESTAKIRQYKLMWDLINAMMKKKMLNVE-TFCIVMRKYARAQKVDEA 152

Query: 158 VKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGW 217
           +  F  M ++    +L +FN +L  LCK K V KA  +F+  R +F  D  +Y+++  GW
Sbjct: 153 IYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEIFENMRDRFTPDSKTYSILLEGW 212

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
                  KA EV +EMVD G  P++ TY+I++    +AG+++EA      M    C+   
Sbjct: 213 GKEPNLPKAREVFREMVDAGSLPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTT 272

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
             Y+ +VH +G    ++ A + F  M   G+   VA +N++I   CK + ++N   V +E
Sbjct: 273 FIYSVLVHTYGTETRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKTNRMKNVYRVLKE 332

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M  KG  PNS + N+++R L   GE + A +   +M    CEP+  TY ++I+ FC+  E
Sbjct: 333 MKSKGVTPNSKSCNIILRHLIDRGEKDEAFDVFRKMI-KVCEPDADTYTMMIKMFCEKKE 391

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           +E   ++++ M      P++ T+++LI+ +     +    V   LL EM++ G  P   T
Sbjct: 392 METADKVWKYMRKKGVFPSMHTFSVLINGLCEEPNTQKACV---LLEEMIEMGIRPSGAT 448

Query: 458 FNRVLNGLL 466
           F R+   LL
Sbjct: 449 FGRLRQLLL 457



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 99/203 (48%), Gaps = 2/203 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           +V  M      PT   ++++   Y +  + + AV  FL M   G +  +  FN+++   C
Sbjct: 259 IVRSMDPSICKPTTFIYSVLVHTYGTETRLEEAVDTFLEMERSGMKADVAVFNSLIGAFC 318

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  +++  Y + K  + K    +  S N+I          ++A +V ++M+ +   P+  
Sbjct: 319 KTNRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIDRGEKDEAFDVFRKMI-KVCEPDAD 377

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY +++K +    ++E A + +  M+K+     + T++ +++G       ++A  + + M
Sbjct: 378 TYTMMIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEEPNTQKACVLLEEM 437

Query: 304 VNGGVLPSVATYNAMIQVLCKKD 326
           +  G+ PS AT+  + Q+L K+D
Sbjct: 438 IEMGIRPSGATFGRLRQLLLKED 460



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 5/169 (2%)

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           SV  Y+ MI+   K    +    +   M+ K  M N  T+ +V+R      +++ A+   
Sbjct: 98  SVRAYHMMIESTAKIRQYKLMWDLINAMMKKK-MLNVETFCIVMRKYARAQKVDEAIYAF 156

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
             M+  +  PN+  +N L+   C +  + +  E+FE M      P+  TY+IL+      
Sbjct: 157 NVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEIFENMRDRFT-PDSKTYSILLEGW--- 212

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
            K  +L  A ++  EMVD G +P   T++ +++ L   G    A  I+R
Sbjct: 213 GKEPNLPKAREVFREMVDAGSLPDIVTYSIMVDILCKAGRVDEALGIVR 261


>gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 530

 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 119/348 (34%), Positives = 189/348 (54%), Gaps = 1/348 (0%)

Query: 84  LKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAI 143
           L++L FFN  +    +  SP  ++  IDLA +LR +   W L+  MKS  +  T  TF++
Sbjct: 124 LQSLAFFNWATTLEGFPSSPEPYNEMIDLAGKLRHFDLAWHLIDLMKSRGVRITVSTFSV 183

Query: 144 IAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF 203
           +  RYV AG A  AV  F  M ++GC+    SF+ ++  LCK+++  +A   F   + KF
Sbjct: 184 LVRRYVRAGLAAEAVHAFNRMEDYGCKPDKVSFSIVISSLCKKRRASEAELFFDSLKHKF 243

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
           + DVI Y  + +GWC      KA EV  +M + G+ PN+ TY+IV+    R GQI  A  
Sbjct: 244 EPDVIVYTSLVHGWCRAGDIAKAEEVFSDMKEAGVKPNVYTYSIVIDSLCRCGQITRAHD 303

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
            F EM    C+ + VT+ +++      G  ++   V++ M   G      +YN +I+  C
Sbjct: 304 VFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLGCAADTISYNFLIESHC 363

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
           K ++++ A+ V + MV KG  PN++T+N +   +    ++  A     +MK+ +C PN  
Sbjct: 364 KDENLDEAVKVLDTMVKKGVAPNASTFNSIFGCIAELHDVNGAHRMYAKMKELKCMPNTL 423

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
           TYNIL+R F D+  I+  L+L ++M      PN++TY ILI  MF  K
Sbjct: 424 TYNILMRMFADSKSIDMVLKLKKEMDESEVEPNVNTYRILI-LMFCEK 470



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 99/208 (47%), Gaps = 7/208 (3%)

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y  ++   G +     A ++ D M + GV  +V+T++ +++   +      A+  F  M 
Sbjct: 146 YNEMIDLAGKLRHFDLAWHLIDLMKSRGVRITVSTFSVLVRRYVRAGLAAEAVHAFNRME 205

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             G  P+  ++++VI  LC       A  F   +K  + EP+V  Y  L+  +C AG+I 
Sbjct: 206 DYGCKPDKVSFSIVISSLCKKRRASEAELFFDSLKH-KFEPDVIVYTSLVHGWCRAGDIA 264

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
           +  E+F  M      PN+ TY+I+I S+    +   +  A  +  EM+D G  P   TFN
Sbjct: 265 KAEEVFSDMKEAGVKPNVYTYSIVIDSLC---RCGQITRAHDVFSEMIDAGCDPNAVTFN 321

Query: 460 RVLNGLLLIGNQGLAKEILRLQSRCGRL 487
            ++   +     G  +++L++ ++  RL
Sbjct: 322 SLMRVHV---KAGRTEKVLQVYNQMKRL 346



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 30/151 (19%), Positives = 65/151 (43%), Gaps = 4/151 (2%)

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           +G+  +   YN +I         + A   +  MK       V T+++L+R +  AG    
Sbjct: 137 EGFPSSPEPYNEMIDLAGKLRHFDLAWHLIDLMKSRGVRITVSTFSVLVRRYVRAGLAAE 196

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
            +  F +M    C P+  +++I+ISS+  ++++ +     +L  + +   F P    +  
Sbjct: 197 AVHAFNRMEDYGCKPDKVSFSIVISSLCKKRRASE----AELFFDSLKHKFEPDVIVYTS 252

Query: 461 VLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           +++G    G+   A+E+       G  P  +
Sbjct: 253 LVHGWCRAGDIAKAEEVFSDMKEAGVKPNVY 283



 Score = 45.1 bits (105), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 67/173 (38%), Gaps = 35/173 (20%)

Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           A + S+F+      A L D      +  +MK L   P   T+ I+   +  +   D  +K
Sbjct: 384 APNASTFNSIFGCIAELHDVNGAHRMYAKMKELKCMPNTLTYNILMRMFADSKSIDMVLK 443

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCL 219
           +   M E     ++N++  ++ + C++     AYNL                        
Sbjct: 444 LKKEMDESEVEPNVNTYRILILMFCEKGHWNNAYNL------------------------ 479

Query: 220 VKRTNKALEVLKEMV-DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
                     +KEMV ++ L PNL+ Y  VL+    AGQ+++      +M  R
Sbjct: 480 ----------MKEMVEEKCLKPNLSIYETVLELLRNAGQLKKHEELVEKMVAR 522


>gi|313851107|ref|NP_001186539.1| pentatricopeptide repeat protein [Zea mays]
 gi|312064725|gb|ADQ27447.1| pentatricopeptide repeat protein [Zea mays]
 gi|414872960|tpg|DAA51517.1| TPA: hypothetical protein ZEAMMB73_325693 [Zea mays]
          Length = 489

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 130/433 (30%), Positives = 217/433 (50%), Gaps = 7/433 (1%)

Query: 43  LASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHP--TYA 100
           L  LI++      L   L    +  TP++ + ++K L N  + A  FF           A
Sbjct: 44  LCKLIISCRKASALEHELDHSGVRVTPEIAESVLKHLDNAGMLAYRFFEWARKQKRGVCA 103

Query: 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           H+  S+   +   A++R Y+ +W +V  M+   +   + TF II  +Y  A K D AV  
Sbjct: 104 HTVRSYHTVVTSLAKIRQYQLMWDVVAIMRKEGVANVE-TFGIIMRKYARAQKLDEAVYT 162

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV 220
           F  M ++G   +L +FN++L  LCK K V KA  +F     +F  D  +Y+++  GW   
Sbjct: 163 FNVMEKYGVAHNLAAFNSLLSALCKSKNVRKAQEIFDKMNNRFSPDAKTYSILLEGWGRA 222

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
               K  EV  +M+  G  P++ TY I++    + G++EEA     +M  R C+     Y
Sbjct: 223 PSLPKMREVYSDMLAAGCQPDIVTYGIMVDALCKTGRVEEAVCVVQDMSSRGCQPTTFIY 282

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
           + +VH +GV   I+ A   F  M   G++P V  YNA+I   CK    ENA  V ++M G
Sbjct: 283 SILVHTYGVDMRIEDAVAAFLDMEKDGIMPDVVVYNALITAFCKVKKFENAFRVMDDMQG 342

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
            G  PNS T+N+++  L   G+ + A   V R     C+P+  TY ++I+ FC+  +IE 
Sbjct: 343 HGISPNSRTWNIILNTLISLGKDDEAYR-VFRSMIKRCKPDSDTYTMMIKMFCENDKIEM 401

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
            L++++ M     LP++ T+++LI+ +  + +     V   LL +M+++G  P   TF +
Sbjct: 402 ALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACV---LLEDMIEKGIRPPGSTFGK 458

Query: 461 VLNGLLLIGNQGL 473
           +   LL  G + +
Sbjct: 459 LRQLLLKEGRKDV 471



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 156/345 (45%), Gaps = 42/345 (12%)

Query: 75  IIKRLWNHALK---ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKS 131
           II R +  A K   A++ FN++  +   AH+ ++F+  +    + ++ R    +  +M +
Sbjct: 145 IIMRKYARAQKLDEAVYTFNVMEKYGV-AHNLAAFNSLLSALCKSKNVRKAQEIFDKMNN 203

Query: 132 LSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEK 191
               P  KT++I+ E +  A    +  +++  M   GC+  + ++  ++D LCK  +VE+
Sbjct: 204 -RFSPDAKTYSILLEGWGRAPSLPKMREVYSDMLAAGCQPDIVTYGIMVDALCKTGRVEE 262

Query: 192 AYNLFKVFRGK------------------------------------FKADVISYNVIAN 215
           A  + +    +                                       DV+ YN +  
Sbjct: 263 AVCVVQDMSSRGCQPTTFIYSILVHTYGVDMRIEDAVAAFLDMEKDGIMPDVVVYNALIT 322

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
            +C VK+   A  V+ +M   G++PN  T+NI+L      G+ +EA+R F  M KR C+ 
Sbjct: 323 AFCKVKKFENAFRVMDDMQGHGISPNSRTWNIILNTLISLGKDDEAYRVFRSMIKR-CKP 381

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
           D  TYT ++  F    +I+ A  V+  M     LPS+ T++ +I  LC K  V  A ++ 
Sbjct: 382 DSDTYTMMIKMFCENDKIEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLL 441

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
           E+M+ KG  P  +T+  + + L   G  +     V +MK    EP
Sbjct: 442 EDMIEKGIRPPGSTFGKLRQLLLKEGRKDVLDFLVEKMKILAQEP 486



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 141/298 (47%), Gaps = 10/298 (3%)

Query: 192 AYNLF----KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           AY  F    K  RG     V SY+ +      +++     +V+  M   G+  N+ T+ I
Sbjct: 87  AYRFFEWARKQKRGVCAHTVRSYHTVVTSLAKIRQYQLMWDVVAIMRKEGV-ANVETFGI 145

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           +++ Y RA +++EA   F  M+K     ++  + +++        +++A+ +FD M N  
Sbjct: 146 IMRKYARAQKLDEAVYTFNVMEKYGVAHNLAAFNSLLSALCKSKNVRKAQEIFDKM-NNR 204

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
             P   TY+ +++   +  S+     V+ +M+  G  P+  TY +++  LC TG +E A+
Sbjct: 205 FSPDAKTYSILLEGWGRAPSLPKMREVYSDMLAAGCQPDIVTYGIMVDALCKTGRVEEAV 264

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
             V  M    C+P    Y+IL+  +     IE  +  F  M     +P++  YN LI++ 
Sbjct: 265 CVVQDMSSRGCQPTTFIYSILVHTYGVDMRIEDAVAAFLDMEKDGIMPDVVVYNALITAF 324

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR-LQSRC 484
              KK ++   A +++ +M   G  P   T+N +LN L+ +G    A  + R +  RC
Sbjct: 325 CKVKKFEN---AFRVMDDMQGHGISPNSRTWNIILNTLISLGKDDEAYRVFRSMIKRC 379


>gi|297841875|ref|XP_002888819.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297334660|gb|EFH65078.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 512

 Score =  221 bits (563), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 128/475 (26%), Positives = 238/475 (50%), Gaps = 12/475 (2%)

Query: 16  FCIYRGLSPLTTTSPAPLPPAAADPAALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQI 75
           F +Y      +  +       + D   +  ++   TD +  T  L+  S+  +P L++++
Sbjct: 44  FTVYGSFHASSVETQVSANDVSQDADKICKILSKFTDSKVET-LLNEASVKLSPALIEEV 102

Query: 76  IKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLG 135
           +K+L N  + AL  F        + H+ S+++  I+   +++ ++ +W LV  MK   L 
Sbjct: 103 LKKLSNAGVLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWNLVDDMKQKKL- 161

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
            ++ TFA+I+ RY  A K   A+  F  M ++G +   + FN +LD+L K + V  A  +
Sbjct: 162 LSKDTFALISRRYARARKVKEAITAFHKMEDYGFKMESSDFNRMLDILSKSRNVGDAQKV 221

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F K+ + +F+ D+ SY ++  GW       +  EV  EM D G  P++  Y I++  Y +
Sbjct: 222 FDKMKKKRFEPDIKSYTILLEGWGQELNLLRVNEVYGEMKDEGFEPDVVAYGIIINAYCK 281

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
           A + +EA RFF EM++R C+     + ++++G G   ++  A   F+   + G      T
Sbjct: 282 AKKYDEAVRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPT 341

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YNA++   C    +E+A    +EM  KG  PN+ TY++++  L      + A E   +M 
Sbjct: 342 YNALVGAYCWSQRMEDAFKTVDEMRSKGIGPNARTYDIILHHLIRMQRTKEAYEVYQKM- 400

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
              CEP V TY I++R FC+   ++  ++++++M     LP +  ++ LI+++    K D
Sbjct: 401 --SCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLD 458

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPR 489
           +   A +   EM+D G  P    F+R+   LL   ++G   ++  L  +  RL +
Sbjct: 459 E---ACEYFNEMLDVGIRPPGHLFSRLKQTLL---DEGRKDKVADLAVKMDRLRK 507


>gi|255580475|ref|XP_002531063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529358|gb|EEF31324.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  221 bits (562), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 130/441 (29%), Positives = 227/441 (51%), Gaps = 11/441 (2%)

Query: 48  LTSTDPRT-LTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSF 106
           L S +P + + + L   S   +P LV +++KRL N    AL FF        + ++  S+
Sbjct: 91  LLSKNPNSSIEKLLLGASFKVSPALVLEVLKRLSNAGALALSFFKWAEKQKGFMYNTESY 150

Query: 107 DHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE 166
           +  ID   +++ +  +W LV+ MK   +  T++TFA+I+ RY  +GK   A+  F  M +
Sbjct: 151 NALIDSLGKIKQFNMIWNLVNDMKRKGV-LTKETFALISRRYARSGKVKEAMNTFEKMEK 209

Query: 167 HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTNK 225
            G +     FN +LD L K ++V  A N+F   +  +F  D+ SY ++  GW   K   K
Sbjct: 210 FGLKIESTDFNRLLDTLIKSRQVLSAQNVFDKMKIRRFVPDIKSYTILLEGWGQEKNLLK 269

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
             EV +EM D G  P++ TY I++  Y +  + ++A   F EM+ + C+     + T+++
Sbjct: 270 LDEVYREMKDEGFEPDVVTYGILINAYCKVRKYDDAIELFREMESKNCQPSPHIFCTLIN 329

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
           G G V  +  A   F      G  P   TYNA++   C    +++A  + +EM   G  P
Sbjct: 330 GLGSVRRLSEALEFFRRSKASGFAPETPTYNAVVGAYCWSMRIDDAYRMVDEMRKSGVGP 389

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRM-KDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           NS TY++++  L    +   A     +M  ++ECEP V TY+I++R FC+  ++E  +++
Sbjct: 390 NSRTYDIILHHLIKAEKTTEAFSVFEKMSSEEECEPTVSTYDIIVRMFCNMDKVESAIKV 449

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           +++M +    P +  ++ILI+S+    K D   +A K   EM+D G  P    F+ +   
Sbjct: 450 WDRMKAKGVHPGMHMFSILINSLCHENKLD---IACKYFQEMLDVGIRPPAALFSHLKQA 506

Query: 465 LLLIGNQG----LAKEILRLQ 481
           L+  G +     LA++I +L+
Sbjct: 507 LIEDGRKDTVVLLAQKIDKLR 527



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 104/429 (24%), Positives = 181/429 (42%), Gaps = 56/429 (13%)

Query: 83  ALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHR-----MKSLSLGPT 137
           AL + H     S H     +P  F   I     + D R +  L+ +     ++ L LG +
Sbjct: 54  ALLSPHLNFQRSIHADLEQNPEIFTDKI-----IEDTRNICRLLSKNPNSSIEKLLLGAS 108

Query: 138 QK-TFAIIAE---RYVSAGKADRAVKIF-LSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
            K + A++ E   R  +AG    A+  F  +  + G   +  S+N ++D L K K+    
Sbjct: 109 FKVSPALVLEVLKRLSNAGAL--ALSFFKWAEKQKGFMYNTESYNALIDSLGKIKQFNMI 166

Query: 193 YNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
           +NL    + K      ++ +I+  +    +  +A+   ++M   GL    T +N +L   
Sbjct: 167 WNLVNDMKRKGVLTKETFALISRRYARSGKVKEAMNTFEKMEKFGLKIESTDFNRLLDTL 226

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
            ++ Q+  A   F +MK R+   D+ +YT ++ G+G    + +   V+  M + G  P V
Sbjct: 227 IKSRQVLSAQNVFDKMKIRRFVPDIKSYTILLEGWGQEKNLLKLDEVYREMKDEGFEPDV 286

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGK------------------------------- 341
            TY  +I   CK    ++AI +F EM  K                               
Sbjct: 287 VTYGILINAYCKVRKYDDAIELFREMESKNCQPSPHIFCTLINGLGSVRRLSEALEFFRR 346

Query: 342 ----GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
               G+ P + TYN V+   C +  ++ A   V  M+     PN +TY+I++ +   A +
Sbjct: 347 SKASGFAPETPTYNAVVGAYCWSMRIDDAYRMVDEMRKSGVGPNSRTYDIILHHLIKAEK 406

Query: 398 IERGLELFEKMGS-GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
                 +FEKM S   C P + TY+I++  MF     D +  A K+   M  +G  P   
Sbjct: 407 TTEAFSVFEKMSSEEECEPTVSTYDIIV-RMFC--NMDKVESAIKVWDRMKAKGVHPGMH 463

Query: 457 TFNRVLNGL 465
            F+ ++N L
Sbjct: 464 MFSILINSL 472


>gi|15223927|ref|NP_177262.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169669|sp|Q9C9A2.1|PP112_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g71060, mitochondrial; Flags: Precursor
 gi|12323433|gb|AAG51696.1|AC016972_15 hypothetical protein; 31939-30407 [Arabidopsis thaliana]
 gi|332197036|gb|AEE35157.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 510

 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/475 (27%), Positives = 240/475 (50%), Gaps = 12/475 (2%)

Query: 16  FCIYRGLSPLTTTSPAPLPPAAADPAALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQI 75
           F +Y      +  +      A+ D   +  ++   TD +  T  L+  S+  +P L++++
Sbjct: 42  FTLYGSFHASSVETQVSANDASQDAERICKILTKFTDSKVET-LLNEASVKLSPALIEEV 100

Query: 76  IKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLG 135
           +K+L N  + AL  F        + H+ S+++  I+   +++ ++ +W+LV  MK+  L 
Sbjct: 101 LKKLSNAGVLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKL- 159

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
            +++TFA+I+ RY  A K   A+  F  M E G +   + FN +LD L K + V  A  +
Sbjct: 160 LSKETFALISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKV 219

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F K+ + +F+ D+ SY ++  GW       +  EV +EM D G  P++  Y I++  + +
Sbjct: 220 FDKMKKKRFEPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCK 279

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
           A + EEA RFF EM++R C+     + ++++G G   ++  A   F+   + G      T
Sbjct: 280 AKKYEEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPT 339

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YNA++   C    +E+A    +EM  KG  PN+ TY++++  L      + A E    M 
Sbjct: 340 YNALVGAYCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTM- 398

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
              CEP V TY I++R FC+   ++  ++++++M     LP +  ++ LI+++    K D
Sbjct: 399 --SCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLD 456

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPR 489
           +   A +   EM+D G  P    F+R+   LL   ++G   ++  L  +  RL +
Sbjct: 457 E---ACEYFNEMLDVGIRPPGHMFSRLKQTLL---DEGRKDKVTDLVVKMDRLRK 505



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 96/422 (22%), Positives = 181/422 (42%), Gaps = 43/422 (10%)

Query: 80  WNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQK 139
           W H  KA +F    S+H +   +  S + A   A R+    T +T       L+    + 
Sbjct: 35  WIH--KASNFTLYGSFHASSVETQVSANDASQDAERICKILTKFTDSKVETLLNEASVKL 92

Query: 140 TFAIIAE---RYVSAGKADRAVKIF-LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           + A+I E   +  +AG    A+ +F  + ++ G + + +++N +++ L K K+ +  ++L
Sbjct: 93  SPALIEEVLKKLSNAGVL--ALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSL 150

Query: 196 FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
               + K      ++ +I+  +   ++  +A+    +M + G     + +N +L    ++
Sbjct: 151 VDDMKAKKLLSKETFALISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKS 210

Query: 256 GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
             + +A + F +MKK++ E D+ +YT ++ G+G    + R   V   M + G  P V  Y
Sbjct: 211 RNVGDAQKVFDKMKKKRFEPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAY 270

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
             +I   CK    E AI  F EM  +   P+   +  +I GL    ++  ALEF  R K 
Sbjct: 271 GIIINAHCKAKKYEEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKS 330

Query: 376 DECEPNVQTYNILIRYFCDAGEIE--------------------------------RGLE 403
                   TYN L+  +C +  +E                                R  E
Sbjct: 331 SGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKE 390

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
            +E   +  C P + TY I++  MF  K+  D+ +  K+  EM  +G +P    F+ ++ 
Sbjct: 391 AYEVYQTMSCEPTVSTYEIMV-RMFCNKERLDMAI--KIWDEMKGKGVLPGMHMFSSLIT 447

Query: 464 GL 465
            L
Sbjct: 448 AL 449


>gi|449503427|ref|XP_004161997.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g71060, mitochondrial-like [Cucumis sativus]
          Length = 542

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 129/441 (29%), Positives = 226/441 (51%), Gaps = 9/441 (2%)

Query: 37  AADPAALASLILTSTDPRTLTQTL-HCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSY 95
           A D      LI  S +P +  ++L     +  +P L+ +++K+L N    AL FF     
Sbjct: 91  AQDAEKFCKLI--SKNPNSCIESLLDGAPMELSPALIVEVLKKLSNAGFLALSFFRWAEK 148

Query: 96  HPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKAD 155
              + H+  S++  I+   +++ +  +W LV  MK   +  +++TFA+I  RY  A K  
Sbjct: 149 QKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKGI-LSRETFALITRRYARARKVK 207

Query: 156 RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIA 214
            AV+ F  M + G +  ++ FN +LD LCK + V+KA  +F K+  G+FK D+ SY ++ 
Sbjct: 208 EAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHGRFKPDIKSYTILL 267

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
            GW   +   K  EV +EM D G  P++ T+ I++  + +A + +EA R F EM+ +  +
Sbjct: 268 EGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKNIK 327

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
                + T+++G G    +K A   F+ +   G  P   TYNA++   C    +  A  +
Sbjct: 328 PSPHVFCTLINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAYAYRM 387

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM-KDDECEPNVQTYNILIRYFC 393
            +EM   G  PNS TY++++  L    + + A     RM ++  CEP + TY+I+IR FC
Sbjct: 388 VDEMRKSGVGPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMIRMFC 447

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
           +   ++  ++++++M +   LP +  ++ LI+S+    K +D   A     EM+D G  P
Sbjct: 448 NEERVDMAIQIWDEMKAKGVLPGMHLFSTLINSLCHEHKLED---ACTYFQEMLDVGIRP 504

Query: 454 RKFTFNRVLNGLLLIGNQGLA 474
               F+ +   LL  G +  A
Sbjct: 505 PATMFSNLKQALLDDGRKDTA 525


>gi|449465535|ref|XP_004150483.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Cucumis sativus]
          Length = 542

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 129/441 (29%), Positives = 226/441 (51%), Gaps = 9/441 (2%)

Query: 37  AADPAALASLILTSTDPRTLTQTL-HCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSY 95
           A D      LI  S +P +  ++L     +  +P L+ +++K+L N    AL FF     
Sbjct: 91  AQDAEKFCKLI--SKNPNSCIESLLDGAPMELSPALIVEVLKKLSNAGFLALSFFRWAEK 148

Query: 96  HPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKAD 155
              + H+  S++  I+   +++ +  +W LV  MK   +  +++TFA+I  RY  A K  
Sbjct: 149 QKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKGI-LSRETFALITRRYARARKVK 207

Query: 156 RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIA 214
            AV+ F  M + G +  ++ FN +LD LCK + V+KA  +F K+  G+FK D+ SY ++ 
Sbjct: 208 EAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHGRFKPDIKSYTILL 267

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
            GW   +   K  EV +EM D G  P++ T+ I++  + +A + +EA R F EM+ +  +
Sbjct: 268 EGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKNIK 327

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
                + T+++G G    +K A   F+ +   G  P   TYNA++   C    +  A  +
Sbjct: 328 PSPHVFCTLINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAYAYRM 387

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM-KDDECEPNVQTYNILIRYFC 393
            +EM   G  PNS TY++++  L    + + A     RM ++  CEP + TY+I+IR FC
Sbjct: 388 VDEMRKSGVGPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMIRMFC 447

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
           +   ++  ++++++M +   LP +  ++ LI+S+    K +D   A     EM+D G  P
Sbjct: 448 NEERVDMAIQIWDEMKAKGVLPGMHLFSTLINSLCHEHKLED---ACTYFQEMLDVGIRP 504

Query: 454 RKFTFNRVLNGLLLIGNQGLA 474
               F+ +   LL  G +  A
Sbjct: 505 PATMFSNLKQALLDDGRKDTA 525



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 120/248 (48%), Gaps = 2/248 (0%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M+     P   TF I+   +  A K D A+++F  M     + S + F T+++ L  EK+
Sbjct: 286 MRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKNIKPSPHVFCTLINGLGSEKR 345

Query: 189 VEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           +++A   F+  +   F  +  +YN +   +C   +   A  ++ EM   G+ PN  TY+I
Sbjct: 346 LKEALEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAYAYRMVDEMRKSGVGPNSRTYDI 405

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRK-CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
           +L    +  + +EA+  F  M +   CE  + TY  ++  F     +  A  ++D M   
Sbjct: 406 ILHHLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMIRMFCNEERVDMAIQIWDEMKAK 465

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           GVLP +  ++ +I  LC +  +E+A   F+EM+  G  P +T ++ + + L   G  + A
Sbjct: 466 GVLPGMHLFSTLINSLCHEHKLEDACTYFQEMLDVGIRPPATMFSNLKQALLDDGRKDTA 525

Query: 367 LEFVGRMK 374
           L    ++K
Sbjct: 526 LLMAEKIK 533



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 87/194 (44%), Gaps = 15/194 (7%)

Query: 85  KALHFFNILSYH------PTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQ 138
           +AL FF  L         PTY     ++  ++ +A   R       +V  M+   +GP  
Sbjct: 348 EALEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAYAYR-------MVDEMRKSGVGPNS 400

Query: 139 KTFAIIAERYVSAGKADRAVKIFLSM-HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK 197
           +T+ II    +   K+  A  +F  M  E GC  +L++++ ++ + C E++V+ A  ++ 
Sbjct: 401 RTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMIRMFCNEERVDMAIQIWD 460

Query: 198 VFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256
             + K     +  ++ + N  C   +   A    +EM+D G+ P  T ++ + +     G
Sbjct: 461 EMKAKGVLPGMHLFSTLINSLCHEHKLEDACTYFQEMLDVGIRPPATMFSNLKQALLDDG 520

Query: 257 QIEEAWRFFLEMKK 270
           + + A     ++KK
Sbjct: 521 RKDTALLMAEKIKK 534


>gi|356517665|ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Glycine max]
          Length = 564

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 125/396 (31%), Positives = 208/396 (52%), Gaps = 4/396 (1%)

Query: 84  LKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAI 143
           L++L FFN  S    +  SP  ++  +DLA +LR +   W ++  MKS  +  T  TF+ 
Sbjct: 159 LQSLAFFNWSSSLDGFPASPEPYNEMLDLAGKLRQFDLAWHVIDLMKSRGVEITVHTFSA 218

Query: 144 IAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF 203
           +  RYV AG A  AV  F  M ++GC   + +F+ ++  LCK+++  +A + F   + +F
Sbjct: 219 LVRRYVRAGLAAEAVHAFNRMEDYGCTPDMVAFSIVISSLCKKRRANEAQSFFDSLKHRF 278

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
           + DV+ Y  + +GWC     +KA EV  +M   G+ PN+ TY+IV+    R GQI  A  
Sbjct: 279 EPDVVVYTSLVHGWCRAGDISKAEEVFSDMKMAGIKPNVYTYSIVIDSLCRCGQITRAHD 338

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
            F EM    C+ + VT+ +++      G  ++   V++ M   G      +YN +I+  C
Sbjct: 339 VFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLKVYNQMKRLGCPADTISYNFIIESHC 398

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
           + +++E A  +   MV KG  PN++T+N +   +    ++  A     RMK+  C+PN  
Sbjct: 399 RDENLEEAAKILNLMVKKGVAPNASTFNFIFGCIAKLHDVNGAHRMYARMKELNCQPNTL 458

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
           TYNIL+R F ++   +  L++ ++M      PN++TY ILI SMF   K  +   A KL+
Sbjct: 459 TYNILMRMFAESRSTDMVLKMKKEMDESQVEPNVNTYRILI-SMFCDMKHWN--NAYKLM 515

Query: 444 IEMV-DRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           +EMV ++   P    +  VL  L   G     +E++
Sbjct: 516 MEMVEEKCLRPNLSVYETVLELLRKAGQLKKHEELV 551



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 98/208 (47%), Gaps = 7/208 (3%)

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y  ++   G + +   A +V D M + GV  +V T++A+++   +      A+  F  M 
Sbjct: 181 YNEMLDLAGKLRQFDLAWHVIDLMKSRGVEITVHTFSALVRRYVRAGLAAEAVHAFNRME 240

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             G  P+   +++VI  LC       A  F   +K    EP+V  Y  L+  +C AG+I 
Sbjct: 241 DYGCTPDMVAFSIVISSLCKKRRANEAQSFFDSLKH-RFEPDVVVYTSLVHGWCRAGDIS 299

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
           +  E+F  M      PN+ TY+I+I S+    +   +  A  +  EM+D G  P   TFN
Sbjct: 300 KAEEVFSDMKMAGIKPNVYTYSIVIDSLC---RCGQITRAHDVFSEMIDAGCDPNAVTFN 356

Query: 460 RVLNGLLLIGNQGLAKEILRLQSRCGRL 487
            ++   +     G  +++L++ ++  RL
Sbjct: 357 SLMRVHV---KAGRTEKVLKVYNQMKRL 381


>gi|449457341|ref|XP_004146407.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Cucumis sativus]
 gi|449523938|ref|XP_004168980.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Cucumis sativus]
          Length = 506

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 133/455 (29%), Positives = 238/455 (52%), Gaps = 22/455 (4%)

Query: 25  LTTTSPAPLPPAAADPAALASLILTSTDP-RTLTQTLHCPSLHWTPQLVDQIIKRLWNHA 83
           L++  P   P   AD   ++ ++L   +P  ++  +L   S+ ++  L+DQ + RL +H+
Sbjct: 25  LSSLLPQIQPSKDAD--LVSQILLHHHNPFHSMESSLQLHSISFSSHLLDQTLLRLTHHS 82

Query: 84  LKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAI 143
             AL FF+  +  P+   S +S++  +D+ A++R +   W L+ +M          TF +
Sbjct: 83  KIALSFFDYANSLPSNPISTTSYNILLDILAKVRQFDAAWHLILQMDH----KGTDTFLL 138

Query: 144 IAERYVSAGKADRAVKIFLSMHE-HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK 202
           +  R +S+G+  +A++ F  +    G +  ++ F  +LD+LCK   V+ A  +F   + +
Sbjct: 139 LIRRLISSGRTRQAIRAFDDIEGLTGNKVGIDDFCYLLDVLCKYGYVKVAVEVFNKRKEE 198

Query: 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262
           F  DV  Y ++  GWC + R   A   LK+MV+RG+ PN+ TYN++L G  R   +    
Sbjct: 199 FGVDVKIYTILIYGWCKIGRFEMAERFLKDMVERGIEPNVVTYNVLLNGVCRRASLHPEG 258

Query: 263 RF----------FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
           RF          F EM+KR  E DV +++ ++H +    + + + +    M   G+ P+V
Sbjct: 259 RFEKTIRHAEKVFDEMRKRGIEPDVTSFSIVLHVYSRAHKPELSLDKLKQMKELGISPTV 318

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
           ATY ++I+ LC    +E+   + EEMV  G  P+ TTYN   +      +   AL    +
Sbjct: 319 ATYTSVIKCLCSCGRLEDGENLIEEMVRSGISPSPTTYNCFFKEYRGRKDGAGALRLYKK 378

Query: 373 MKDD-ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
           M++D  C P++ TYNIL+  F +  + E   EL+  M      P+LD+Y  +I  +  ++
Sbjct: 379 MREDCLCAPSLHTYNILLALFLNLDKKETLKELWNDMKESGVGPDLDSYTTIIHGLCEKQ 438

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
           +  +   A +  +EM++RGF+P+K TF  +  GL+
Sbjct: 439 RWSE---ACQFFVEMIERGFLPQKVTFEMLYRGLI 470



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 97/228 (42%), Gaps = 11/228 (4%)

Query: 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           H    F+  I  A ++ D          M+   + P   +F+I+   Y  A K + ++  
Sbjct: 255 HPEGRFEKTIRHAEKVFD---------EMRKRGIEPDVTSFSIVLHVYSRAHKPELSLDK 305

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCL 219
              M E G   ++ ++ +++  LC   ++E   NL + + R        +YN     +  
Sbjct: 306 LKQMKELGISPTVATYTSVIKCLCSCGRLEDGENLIEEMVRSGISPSPTTYNCFFKEYRG 365

Query: 220 VKRTNKALEVLKEMVDRGL-NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
            K    AL + K+M +  L  P+L TYNI+L  +    + E     + +MK+     D+ 
Sbjct: 366 RKDGAGALRLYKKMREDCLCAPSLHTYNILLALFLNLDKKETLKELWNDMKESGVGPDLD 425

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           +YTTI+HG         A   F  M+  G LP   T+  + + L + D
Sbjct: 426 SYTTIIHGLCEKQRWSEACQFFVEMIERGFLPQKVTFEMLYRGLIQSD 473



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 75/167 (44%), Gaps = 7/167 (4%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG-CRQSLNSFNTILDLL 183
           L+  M    + P+  T+    + Y        A++++  M E   C  SL+++N +L L 
Sbjct: 340 LIEEMVRSGISPSPTTYNCFFKEYRGRKDGAGALRLYKKMREDCLCAPSLHTYNILLALF 399

Query: 184 CKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
               K E    L+   +      D+ SY  I +G C  +R ++A +   EM++RG  P  
Sbjct: 400 LNLDKKETLKELWNDMKESGVGPDLDSYTTIIHGLCEKQRWSEACQFFVEMIERGFLPQK 459

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289
            T+ ++ +G  ++  +   WR      K+K E +  TY + +  + +
Sbjct: 460 VTFEMLYRGLIQSDML-RTWRRL----KKKLEEESKTYGSELKNYHI 501


>gi|242038757|ref|XP_002466773.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
 gi|241920627|gb|EER93771.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
          Length = 487

 Score =  218 bits (556), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 130/440 (29%), Positives = 223/440 (50%), Gaps = 8/440 (1%)

Query: 37  AADPAA-LASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSY 95
           A+D A  L  LI++      +   L    +  TP++ +++++RL N  + A  FF     
Sbjct: 35  ASDLAKRLCKLIISCRKASAVEHELDHSGVRVTPEVAERVLERLDNAGMLAYRFFEWARR 94

Query: 96  HPT--YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGK 153
                 AH+  S+   +   A++R Y+ +W +V  M+   +   + TF+II  +Y  A K
Sbjct: 95  QKRGGCAHTVRSYHTVVASLAKIRQYQLMWDVVAVMRKEGVANVE-TFSIIMRKYARAQK 153

Query: 154 ADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVI 213
            D AV  F  M  +G   +L +FN++L  LCK K V KA  +F     +F  D  +Y+++
Sbjct: 154 FDEAVYTFNIMERYGVAHNLAAFNSLLGALCKSKNVRKAQEIFDKMNNRFSPDAKTYSIL 213

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
             GW       K  EV  +M+  G  P++ TY I++    + G++EEA     +M  R C
Sbjct: 214 LEGWGRAPNLPKMREVYSDMLAAGCQPDIVTYGIMVDALCKTGRVEEAVCVVQDMSSRGC 273

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
           +     Y+ +VH +GV   I+ A   F  M   G++P V  YNA++   CK    +NA  
Sbjct: 274 QPTTFIYSVLVHTYGVDMRIEDAVATFLDMEKDGIVPDVVVYNALVTAFCKVKKFDNAFR 333

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           V ++M G G  PNS T+N+++  L   G+ + A   V R     C+P+  TY ++I+ FC
Sbjct: 334 VMDDMEGHGISPNSRTWNIILNTLISLGKDDEAYR-VFRNMIKRCKPDSDTYTMMIKMFC 392

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
           +  +IE  L++++ M     LP++ T+++LI+ +  + +     V   LL +M+++G  P
Sbjct: 393 ENDKIEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACV---LLEDMIEKGIRP 449

Query: 454 RKFTFNRVLNGLLLIGNQGL 473
              TF ++   LL  G + +
Sbjct: 450 PGSTFGKLRQLLLKEGRKDV 469



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 154/340 (45%), Gaps = 42/340 (12%)

Query: 74  QIIKRLWNHALK---ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMK 130
            II R +  A K   A++ FNI+  +   AH+ ++F+  +    + ++ R    +  +M 
Sbjct: 142 SIIMRKYARAQKFDEAVYTFNIMERYGV-AHNLAAFNSLLGALCKSKNVRKAQEIFDKMN 200

Query: 131 SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190
           +    P  KT++I+ E +  A    +  +++  M   GC+  + ++  ++D LCK  +VE
Sbjct: 201 N-RFSPDAKTYSILLEGWGRAPNLPKMREVYSDMLAAGCQPDIVTYGIMVDALCKTGRVE 259

Query: 191 KAY------------------------------------NLFKVFRGKFKADVISYNVIA 214
           +A                                         + +     DV+ YN + 
Sbjct: 260 EAVCVVQDMSSRGCQPTTFIYSVLVHTYGVDMRIEDAVATFLDMEKDGIVPDVVVYNALV 319

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
             +C VK+ + A  V+ +M   G++PN  T+NI+L      G+ +EA+R F  M KR C+
Sbjct: 320 TAFCKVKKFDNAFRVMDDMEGHGISPNSRTWNIILNTLISLGKDDEAYRVFRNMIKR-CK 378

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
            D  TYT ++  F    +I+ A  V+  M     LPS+ T++ +I  LC K  V  A ++
Sbjct: 379 PDSDTYTMMIKMFCENDKIEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVL 438

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
            E+M+ KG  P  +T+  + + L   G  +     V +MK
Sbjct: 439 LEDMIEKGIRPPGSTFGKLRQLLLKEGRKDVLDFLVEKMK 478



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 137/286 (47%), Gaps = 6/286 (2%)

Query: 200 RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
           RG     V SY+ +      +++     +V+  M   G+  N+ T++I+++ Y RA + +
Sbjct: 97  RGGCAHTVRSYHTVVASLAKIRQYQLMWDVVAVMRKEGV-ANVETFSIIMRKYARAQKFD 155

Query: 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319
           EA   F  M++     ++  + +++        +++A+ +FD M N    P   TY+ ++
Sbjct: 156 EAVYTFNIMERYGVAHNLAAFNSLLGALCKSKNVRKAQEIFDKM-NNRFSPDAKTYSILL 214

Query: 320 QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
           +   +  ++     V+ +M+  G  P+  TY +++  LC TG +E A+  V  M    C+
Sbjct: 215 EGWGRAPNLPKMREVYSDMLAAGCQPDIVTYGIMVDALCKTGRVEEAVCVVQDMSSRGCQ 274

Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA 439
           P    Y++L+  +     IE  +  F  M     +P++  YN L+++    KK D+   A
Sbjct: 275 PTTFIYSVLVHTYGVDMRIEDAVATFLDMEKDGIVPDVVVYNALVTAFCKVKKFDN---A 331

Query: 440 GKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR-LQSRC 484
            +++ +M   G  P   T+N +LN L+ +G    A  + R +  RC
Sbjct: 332 FRVMDDMEGHGISPNSRTWNIILNTLISLGKDDEAYRVFRNMIKRC 377


>gi|226505250|ref|NP_001147833.1| GTP binding protein [Zea mays]
 gi|195614010|gb|ACG28835.1| GTP binding protein [Zea mays]
 gi|413952711|gb|AFW85360.1| GTP binding protein [Zea mays]
          Length = 547

 Score =  218 bits (556), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 132/484 (27%), Positives = 231/484 (47%), Gaps = 20/484 (4%)

Query: 10  KNHLHFFCIYRGLSPLTTTSPAPL-------------PPAAADPAALASLILTSTDPR-T 55
           + H+  FC     S     S  PL             PP     AA     + ST P   
Sbjct: 54  RTHVSQFCTVARQSTDERASAEPLRFTVTPGDAFGDGPPVGMSEAAKMVCRIVSTQPEPK 113

Query: 56  LTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAAR 115
           +  TL    +  +P+LV +++K L N  + AL FF        ++++   F + I+   +
Sbjct: 114 IASTLDALGVAVSPELVAEVLKNLSNAGMLALAFFRWAERQEGFSYTAEGFHNLIEALGK 173

Query: 116 LRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS 175
           ++ +R VW+LV  M+   L  ++ TF +I  RY  A K   AV+ F  M   G +  L+ 
Sbjct: 174 IKQFRLVWSLVETMRCRGL-LSKDTFKLIVRRYARARKVKEAVETFEKMSIFGLKTELSD 232

Query: 176 FNTILDLLCKEKKVEKAYNLFKVFR--GKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           +N ++D L K K+V+KA  ++K  +  GKF  D+ +Y V+  GW   K       + +EM
Sbjct: 233 YNWLIDTLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHEKDLLMVKTMYQEM 292

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           +D G+ P++  Y +++  + ++G+ +EA + F EM+   C      Y  +++G G    +
Sbjct: 293 IDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGLGSEERL 352

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
             A   F+     G    V T NA++   C+    ++A  + +EM      PNS TY+V+
Sbjct: 353 DEALKYFEHYKKSGFPMEVPTCNAVVGAYCRASKFQHAFKMVDEMRKCKVGPNSRTYDVI 412

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           +  L  + + E A     RM  D CEP + TY +++  FC  G ++  L+++++MG    
Sbjct: 413 LHYLIKSQKFEEAYNIFQRMGIDGCEPQLNTYTMMVGMFCSNGRVDMALKVWKQMGEKGV 472

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGL 473
           LP +  ++ LI+ +    + ++  V      EM+D+G  P    F+ +   L+  G   L
Sbjct: 473 LPCMHMFSALINGLCFENRLEEACV---YFQEMLDKGIRPPGQLFSNLKEALVQGGRISL 529

Query: 474 AKEI 477
           A+E+
Sbjct: 530 AQEV 533



 Score = 42.4 bits (98), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 35/175 (20%), Positives = 77/175 (44%), Gaps = 5/175 (2%)

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           ++ +I+ L K         + E M  +G + +  T+ +++R      +++ A+E   +M 
Sbjct: 164 FHNLIEALGKIKQFRLVWSLVETMRCRGLL-SKDTFKLIVRRYARARKVKEAVETFEKMS 222

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG-SGVCLPNLDTYNILISSMFVRKKS 433
               +  +  YN LI     + ++++   ++++M   G  +P+L TY +L+      K  
Sbjct: 223 IFGLKTELSDYNWLIDTLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHEK-- 280

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            DLL+   +  EM+D G  P    +  +++     G    A ++       G +P
Sbjct: 281 -DLLMVKTMYQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMP 334


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  218 bits (554), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 125/391 (31%), Positives = 207/391 (52%), Gaps = 8/391 (2%)

Query: 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           H  S+F+  I    +    R    ++  M S  L P + TF  I + Y+  G  D A++I
Sbjct: 201 HDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRI 260

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWC 218
              M E+GC  +  + N +++  CK+ ++++A +  +  V  G F+ D  +YN + NG C
Sbjct: 261 KEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEG-FRPDQFTYNTLVNGLC 319

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
            +     A+EV+  M+  GL+P++ TYN ++ G  + G+IEEA +   +M  R C  + V
Sbjct: 320 KIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAV 379

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TY  I+        +  A  +   + + G+LP V T+N++IQ LC   + ++A+ +FEEM
Sbjct: 380 TYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEM 439

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
            GKG  P+  TYN++I  LC + ++E AL  +  M+ + C  NV  YN LI  FC    I
Sbjct: 440 KGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRI 499

Query: 399 ERGLELFEKMG-SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           E   E+F++M   GV   ++ TYN LI  +   K+ +D   A +L+ +M+  G  P KFT
Sbjct: 500 EEAEEIFDEMELQGVSRDSV-TYNTLIDGLCKSKRVED---AAQLMDQMIMEGLRPDKFT 555

Query: 458 FNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           +N +L      G+   A +I++  +  G  P
Sbjct: 556 YNSLLTHFCKTGDIKKAADIVQTMTSSGCNP 586



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 112/409 (27%), Positives = 198/409 (48%), Gaps = 11/409 (2%)

Query: 61  HCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYR 120
           H P   +TP+ + + ++R  +  + AL  FN  S  P +  S S ++  +    +   + 
Sbjct: 57  HLPP-DFTPKQLIETLRRQTDE-VAALRVFNWASKQPNFVPSSSVYEEILRKLGKAGSFE 114

Query: 121 TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH-EHGCRQSLNSFNTI 179
            +  ++  MK       +  F I  E Y      D  V I   M  E+  +     +N +
Sbjct: 115 YMRRVLEEMKLSGCEFDRGIFLIFVESYGKFELYDEVVGIVKVMEDEYRIKPDTRFYNVL 174

Query: 180 LDLLC---KEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
           L++L    K K VE A++   + R + + DV ++N++    C   +   A+ +++EM   
Sbjct: 175 LNVLVDANKLKLVESAHS--SMVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMPSY 232

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           GL+P+ TT+  +++GY   G ++ A R   +M +  C    VT   +++GF   G I +A
Sbjct: 233 GLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQA 292

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
            +     V+ G  P   TYN ++  LCK    ++A+ V + M+  G  P+  TYN +I G
Sbjct: 293 LSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISG 352

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
           LC  GE+E A++ + +M   +C PN  TYN +I   C    ++   E+   + S   LP+
Sbjct: 353 LCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPD 412

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           + T+N LI  + +   S +   A  L  EM  +G  P +FT+N +++ L
Sbjct: 413 VCTFNSLIQGLCL---SSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSL 458



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 170/368 (46%), Gaps = 38/368 (10%)

Query: 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
           L P   T+  +       G+ + AVKI   M    C  +  ++N I+  LCKE +V++A 
Sbjct: 339 LDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEAT 398

Query: 194 NLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
            + ++   K    DV ++N +  G CL      A+++ +EM  +G  P+  TYN+++   
Sbjct: 399 EIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSL 458

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
             + ++EEA     EM+   C  +VV Y T++ GF     I+ A  +FD M   GV    
Sbjct: 459 CSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDS 518

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            TYN +I  LCK   VE+A  + ++M+ +G  P+  TYN ++   C TG++++A + V  
Sbjct: 519 VTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQT 578

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFE--KMGSGVCLPNLDTYNILISSMFVR 430
           M    C P++ TY  LI   C AG ++    L    +M   V  P+   YN +I ++F R
Sbjct: 579 MTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPH--AYNPVIQALFKR 636

Query: 431 KKSDDLL---------------------------------VAGKLLIEMVDRGFMPRKFT 457
            ++ + +                                  A    +EM++RG +P   +
Sbjct: 637 NRTHEAMRLFREMLDKSEPPDAITYKIVYRGLCNGGGPIGEAVDFTVEMIERGNIPEFSS 696

Query: 458 FNRVLNGL 465
           F  +  GL
Sbjct: 697 FVMLAEGL 704



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 143/278 (51%), Gaps = 2/278 (0%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177
           ++++   L   MK     P + T+ ++ +   S+ K + A+ +   M  +GC +++  +N
Sbjct: 428 NHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYN 487

Query: 178 TILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
           T++D  CK K++E+A  +F     +    D ++YN + +G C  KR   A +++ +M+  
Sbjct: 488 TLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIME 547

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           GL P+  TYN +L  + + G I++A      M    C  D+VTY T++ G    G ++ A
Sbjct: 548 GLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVA 607

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
             +   +   G++ +   YN +IQ L K++    A+ +F EM+ K   P++ TY +V RG
Sbjct: 608 SRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYKIVYRG 667

Query: 357 LCH-TGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           LC+  G +  A++F   M +    P   ++ +L    C
Sbjct: 668 LCNGGGPIGEAVDFTVEMIERGNIPEFSSFVMLAEGLC 705



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 6/171 (3%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   + +       L+ +M    L P + T+  +   +   G   +A  I  +M
Sbjct: 520 TYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTM 579

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVIS---YNVIANGWCLVK 221
              GC   + ++ T++  LCK  +V+ A  L +    + K  V++   YN +        
Sbjct: 580 TSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSI--QMKGMVLTPHAYNPVIQALFKRN 637

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR-AGQIEEAWRFFLEMKKR 271
           RT++A+ + +EM+D+   P+  TY IV +G     G I EA  F +EM +R
Sbjct: 638 RTHEAMRLFREMLDKSEPPDAITYKIVYRGLCNGGGPIGEAVDFTVEMIER 688


>gi|326504802|dbj|BAK06692.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 522

 Score =  218 bits (554), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 140/455 (30%), Positives = 224/455 (49%), Gaps = 25/455 (5%)

Query: 33  LPPAAADPAA--LASLILTSTDP----RTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKA 86
           LPP A  P A  LA L+L   +P     +  Q L    +  +  L+ QI+ RL   +  A
Sbjct: 36  LPPVAPSPTADELARLLLAHHNPFHPSESPLQLLSGGGVSLSQGLLVQILLRLRGASKLA 95

Query: 87  LHFFNILSYHPTYAHSPSS--FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII 144
           L   N +  HP+ +  P++  +D  +D   R   +   W LV    +     T +TFA++
Sbjct: 96  LSLLNAVRLHPSVSSPPNADAYDAVVDALGRAHQFDAAWRLVVEAAADGAA-TPRTFAVL 154

Query: 145 AERYVSAGKADRAVKIFLSMHEH-GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF 203
           A RYV+AG   +AV+ F  M    G       F T+LD LCK K  + A  +F   + K+
Sbjct: 155 ARRYVAAGLTRQAVRAFDDMEAFLGREPDAQEFTTLLDTLCKYKYPKVAVEVFNKRKYKY 214

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
           + +   Y ++  GWC V R++ A + LK+M+D G+ PN+ TYNI+L G  R   +    R
Sbjct: 215 EPNEKMYTILIYGWCKVNRSDMAQKFLKDMIDHGIEPNIVTYNILLNGICRHASLHPDNR 274

Query: 264 F----------FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
           F            EM  R  E DV +Y+ I+H +    + +    +F  M + G+ P+VA
Sbjct: 275 FDRTVNAAENLLKEMNDRGIEPDVTSYSIILHVYSRAHKAELCLCMFRSMKDRGICPTVA 334

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           TY ++I+ L     +E+A  +  EMV +G  P+  TYN   +      ++  ALE   +M
Sbjct: 335 TYTSVIKCLASCGRLEDAESLLGEMVSEGVCPSPATYNCFFKEYRGRKDVSGALELYNKM 394

Query: 374 KD--DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
           K       P++ +YNIL+  F      E  +EL+  M      P+LD+Y +L+     ++
Sbjct: 395 KAPCSPTAPDIHSYNILLGMFIKLDRHETVMELWNDMCERAVGPDLDSYTLLVHGFCAKE 454

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
           K  +   A +  +EM+++GF+P+K TF     GL+
Sbjct: 455 KWRE---ACQFFMEMIEKGFLPQKITFETPYRGLI 486



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 123/307 (40%), Gaps = 49/307 (15%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           Y  V   V   +     P +K + I+   +    ++D A K    M +HG   ++ ++N 
Sbjct: 199 YPKVAVEVFNKRKYKYEPNEKMYTILIYGWCKVNRSDMAQKFLKDMIDHGIEPNIVTYNI 258

Query: 179 ILDLLCK----------EKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKAL 227
           +L+ +C+          ++ V  A NL K    +  + DV SY++I + +    +    L
Sbjct: 259 LLNGICRHASLHPDNRFDRTVNAAENLLKEMNDRGIEPDVTSYSIILHVYSRAHKAELCL 318

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR-------------------FFLEM 268
            + + M DRG+ P + TY  V+K     G++E+A                     FF E 
Sbjct: 319 CMFRSMKDRGICPTVATYTSVIKCLASCGRLEDAESLLGEMVSEGVCPSPATYNCFFKEY 378

Query: 269 KKRK------------------CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
           + RK                     D+ +Y  ++  F  +   +    +++ M    V P
Sbjct: 379 RGRKDVSGALELYNKMKAPCSPTAPDIHSYNILLGMFIKLDRHETVMELWNDMCERAVGP 438

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
            + +Y  ++   C K+    A   F EM+ KG++P   T+    RGL    +M R    +
Sbjct: 439 DLDSYTLLVHGFCAKEKWREACQFFMEMIEKGFLPQKITFETPYRGLIQ-ADMLRTWRRL 497

Query: 371 GRMKDDE 377
            +  D+E
Sbjct: 498 KKRVDEE 504



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 100/229 (43%), Gaps = 12/229 (5%)

Query: 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           H  + FD  ++ A           L+  M    + P   +++II   Y  A KA+  + +
Sbjct: 270 HPDNRFDRTVNAAE---------NLLKEMNDRGIEPDVTSYSIILHVYSRAHKAELCLCM 320

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCL 219
           F SM + G   ++ ++ +++  L    ++E A +L  ++          +YN     +  
Sbjct: 321 FRSMKDRGICPTVATYTSVIKCLASCGRLEDAESLLGEMVSEGVCPSPATYNCFFKEYRG 380

Query: 220 VKRTNKALEVLKEMVD--RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
            K  + ALE+  +M        P++ +YNI+L  + +  + E     + +M +R    D+
Sbjct: 381 RKDVSGALELYNKMKAPCSPTAPDIHSYNILLGMFIKLDRHETVMELWNDMCERAVGPDL 440

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
            +YT +VHGF    + + A   F  M+  G LP   T+    + L + D
Sbjct: 441 DSYTLLVHGFCAKEKWREACQFFMEMIEKGFLPQKITFETPYRGLIQAD 489


>gi|326517954|dbj|BAK07229.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 549

 Score =  218 bits (554), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 117/424 (27%), Positives = 210/424 (49%), Gaps = 5/424 (1%)

Query: 44  ASLILTS--TDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAH 101
           AS ILTS    P  +   + C  +  + ++VD+I++R  +  + A  FF        Y H
Sbjct: 99  ASRILTSCFASPEAIVIAMDCCPVRVSDRMVDKILRRFGSDWVAAFGFFMWAGAQEGYRH 158

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           S  S++  +D+  + + +  +W L+ +M  +    +  T   +  R   A +   A+  F
Sbjct: 159 SADSYNSMVDILGKFKQFDLMWGLISQMDEIGGLVSLATMTKVMRRLAGASRWTDAIDAF 218

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVK 221
             M + G  +   + N +LD LCKE+ V++A   F+  RG    D  S+N + +GWC  +
Sbjct: 219 NKMDQFGVVKDTTAMNVLLDTLCKERSVKRARGAFQELRGSVPPDESSFNTLVHGWCKAR 278

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
             N+A +++KEM + G  P++ TY  +++ Y      +  +    EM+ + C  +V+TYT
Sbjct: 279 MMNEARDMMKEMEEHGFKPSVITYTSLIEAYCMEKDFQTVYAILNEMRSKGCPPNVITYT 338

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
            ++H  G  G  + A ++FD +   G  P  + YN++I +L +   +E+A  V ++M   
Sbjct: 339 IVMHALGKAGRTQEALDIFDKVRGDGCAPDASFYNSLIYILGRAGRLEDANSVVDKMRMT 398

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
           G  P   T+N +I   C   + E AL+ + +M++  C+P+++TY  L++  C    I+  
Sbjct: 399 GVRPTVATFNTLISAACDHSQAENALKMLVKMEEQSCKPDIKTYTPLLKLCCKRQWIKVL 458

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
             L   M      P+  TY +L++ +    K     +    L EMV +GF P+K TF+ V
Sbjct: 459 RFLICHMFRKDITPDFSTYTLLVTWLCRNGKPAQSCL---FLEEMVLKGFAPKKETFDLV 515

Query: 462 LNGL 465
              L
Sbjct: 516 AEKL 519


>gi|242092396|ref|XP_002436688.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
 gi|241914911|gb|EER88055.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
          Length = 551

 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 125/448 (27%), Positives = 224/448 (50%), Gaps = 9/448 (2%)

Query: 34  PPAAADPAA--LASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFN 91
           PP     AA  +  ++ T  +PR +  TL    +  +P+LV +++K L N  + AL FF 
Sbjct: 95  PPVGISEAAKMVCRIVSTQPEPR-IASTLDALGVAMSPELVAEVLKNLSNAGMLALAFFR 153

Query: 92  ILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSA 151
                  ++++   F + I+   +++ ++ VW+LV  M+   L  ++ TF +I  RY  A
Sbjct: 154 WAERQEGFSYTAEGFHNLIEALGKIKQFKLVWSLVETMRCRGL-LSKDTFKLIVRRYARA 212

Query: 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR--GKFKADVIS 209
            K   AV+ F  M   G +  L+ +N ++D L K K+V+KA  ++K  +  GKF  D+ +
Sbjct: 213 RKVKEAVETFEKMSIFGLKTELSDYNWLIDTLSKSKQVKKAQAIYKEMKRKGKFVPDLKT 272

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           Y V+  GW   K       + +EM+D G+ P++  Y +++  + ++G+ +EA + F EM+
Sbjct: 273 YTVLMEGWGHEKDLLMVKTMYQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEME 332

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
              C      Y  +++G G    +  A   F+     G    V T NA++   C+    E
Sbjct: 333 ASGCMPSPHVYCMLINGLGSEERLDEALKYFEQYKKSGFPMEVPTCNAVVGAYCRASKFE 392

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
           +A  + +EM      PNS TY+V++  L  + + E A     RM  D CEP + TY +++
Sbjct: 393 HAFKMVDEMRECKIGPNSRTYDVILHYLIKSQKFEEAYNVFQRMGMDGCEPQLNTYTMMV 452

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
             FC  G ++  L ++++MG    LP +  ++ LI+ +    + ++  V      EM+D+
Sbjct: 453 GMFCSNGRVDMALNVWKQMGERGVLPCMHMFSALINGLCFENRLEEACV---YFQEMLDK 509

Query: 450 GFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
           G  P    F+ +   L+  G   LA+E+
Sbjct: 510 GIRPPGQLFSNLKEALVEGGRISLAQEM 537



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 128/258 (49%), Gaps = 1/258 (0%)

Query: 117 RDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSF 176
           +D   V T+   M    + P    + ++   +  +GK D A+K+F  M   GC  S + +
Sbjct: 284 KDLLMVKTMYQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVY 343

Query: 177 NTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235
             +++ L  E+++++A   F+ ++   F  +V + N +   +C   +   A +++ EM +
Sbjct: 344 CMLINGLGSEERLDEALKYFEQYKKSGFPMEVPTCNAVVGAYCRASKFEHAFKMVDEMRE 403

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
             + PN  TY+++L    ++ + EEA+  F  M    CE  + TYT +V  F   G +  
Sbjct: 404 CKIGPNSRTYDVILHYLIKSQKFEEAYNVFQRMGMDGCEPQLNTYTMMVGMFCSNGRVDM 463

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
           A NV+  M   GVLP +  ++A+I  LC ++ +E A + F+EM+ KG  P    ++ +  
Sbjct: 464 ALNVWKQMGERGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNLKE 523

Query: 356 GLCHTGEMERALEFVGRM 373
            L   G +  A E   ++
Sbjct: 524 ALVEGGRISLAQEMASKL 541



 Score = 42.4 bits (98), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 35/175 (20%), Positives = 78/175 (44%), Gaps = 5/175 (2%)

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           ++ +I+ L K    +    + E M  +G + +  T+ +++R      +++ A+E   +M 
Sbjct: 168 FHNLIEALGKIKQFKLVWSLVETMRCRGLL-SKDTFKLIVRRYARARKVKEAVETFEKMS 226

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG-SGVCLPNLDTYNILISSMFVRKKS 433
               +  +  YN LI     + ++++   ++++M   G  +P+L TY +L+      K  
Sbjct: 227 IFGLKTELSDYNWLIDTLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHEK-- 284

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            DLL+   +  EM+D G  P    +  +++     G    A ++       G +P
Sbjct: 285 -DLLMVKTMYQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMP 338


>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 528

 Score =  214 bits (546), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 118/383 (30%), Positives = 199/383 (51%), Gaps = 10/383 (2%)

Query: 53  PRTLTQTLHCPSLHWT-----PQLVDQIIKRLW--NHAL---KALHFFNILSYHPTYAHS 102
           P T + +L     H++     P LV  +I++     H +   +AL FFN  +  P + H 
Sbjct: 82  PNTPSHSLSLDFSHFSTSPVSPSLVSHVIEKCAAVRHGIPFFQALSFFNWATSRPGFTHH 141

Query: 103 PSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFL 162
           P  ++  IDLA ++R++   W ++  MK+ ++  + +TF+I+  RYV AG A  AV  F 
Sbjct: 142 PEPYNEMIDLAGKVRNFDLGWQVIDLMKARNVEISIETFSILIRRYVRAGLASEAVHAFN 201

Query: 163 SMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKR 222
            M ++ C+    +F+ ++ +LC++++  +A + F   + KF+ DVI Y  +  GWC    
Sbjct: 202 RMEDYNCKPDKIAFSILISILCRKRRATEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGN 261

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
             +A  V  EM   G  PN+ TY IV+    R GQI  A   F EM    CE + +T+  
Sbjct: 262 IPEAERVFTEMKVAGCMPNVYTYTIVIDALCRCGQITRAHDVFAEMLDVGCEPNSITFNN 321

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++      G  ++   V++ M   G  P   TYN +I+  CK  +++ A+ V   MV KG
Sbjct: 322 LLRVHVKAGRTEKVLQVYNQMKRMGCPPDTVTYNFLIESHCKDGNLDEALKVLNSMVKKG 381

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
             PN++T+N +   +    ++  A     +MK+ +C+ N  TYNIL+R F D    +  L
Sbjct: 382 CSPNASTFNGLFGSIAKLRDVNGAHRLYAKMKELKCKANTVTYNILMRMFVDTKSTDMVL 441

Query: 403 ELFEKMGSGVCLPNLDTYNILIS 425
           +L ++M      PN++TY +LI+
Sbjct: 442 KLKKEMDEDDVEPNVNTYCVLIA 464



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 88/209 (42%), Gaps = 4/209 (1%)

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y  ++   G V        V D M    V  S+ T++ +I+   +      A+  F  M 
Sbjct: 145 YNEMIDLAGKVRNFDLGWQVIDLMKARNVEISIETFSILIRRYVRAGLASEAVHAFNRME 204

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
                P+   ++++I  LC       A  F   +KD + EP+V  Y  L+R +C AG I 
Sbjct: 205 DYNCKPDKIAFSILISILCRKRRATEAQSFFDSLKD-KFEPDVIVYTNLVRGWCRAGNIP 263

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
               +F +M    C+PN+ TY I+I ++    +   +  A  +  EM+D G  P   TFN
Sbjct: 264 EAERVFTEMKVAGCMPNVYTYTIVIDALC---RCGQITRAHDVFAEMLDVGCEPNSITFN 320

Query: 460 RVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            +L   +  G      ++     R G  P
Sbjct: 321 NLLRVHVKAGRTEKVLQVYNQMKRMGCPP 349



 Score = 41.6 bits (96), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 2/137 (1%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           S+F+      A+LRD      L  +MK L       T+ I+   +V     D  +K+   
Sbjct: 387 STFNGLFGSIAKLRDVNGAHRLYAKMKELKCKANTVTYNILMRMFVDTKSTDMVLKLKKE 446

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVK 221
           M E     ++N++  ++ + C       AY  F+  V     K  +  Y  +        
Sbjct: 447 MDEDDVEPNVNTYCVLIAMYCGMGHWNNAYKFFREMVEEKCLKPSLPVYEKVLQQLRKAG 506

Query: 222 RTNKALEVLKEMVDRGL 238
           +  K  E++  MVDRG 
Sbjct: 507 QLKKHEELVAVMVDRGF 523


>gi|357115308|ref|XP_003559432.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Brachypodium distachyon]
          Length = 570

 Score =  214 bits (546), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 125/471 (26%), Positives = 225/471 (47%), Gaps = 10/471 (2%)

Query: 24  PLTTTSPAPLPPAAADPAALA-----SLILTS--TDPRTLTQTLHCPSLHWTPQLVDQII 76
           PL+     P P +  +    A     S IL+S    P  +   + C  +  + ++VD+I+
Sbjct: 74  PLSILPGCPAPASHEEAEFEADIDEVSRILSSHFASPEAIVIAMDCCPVRVSGRMVDKIL 133

Query: 77  KRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGP 136
           +R  +  + A  FF        Y H    ++  +D+  + + +  +W L+ +M  +    
Sbjct: 134 RRFGSDWVAAFGFFMWAGAQEGYCHHADLYNLMVDILGKFKQFDLLWGLIRQMDEIGCLV 193

Query: 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF 196
           +  T   +  R   A +   A+  F  M + G  +   + N +LD LCKEK V++A  +F
Sbjct: 194 SLATMTKVMRRLAGANRWTDAIDAFNKMDQFGVVRDTKAMNALLDTLCKEKSVKRARGVF 253

Query: 197 KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256
           +  RG    D  S+N + +GWC  +  N+A + +KEM + G +P++ TY  +++ Y    
Sbjct: 254 QELRGVVPPDESSFNTLVHGWCQARMLNEARDTMKEMEEHGFSPSVITYTSLIEAYCMEK 313

Query: 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
             +  +    EM  + C  +V+TYT ++H  G  G  + A +VFD +   G +P  + YN
Sbjct: 314 DFQTVYAILNEMCSKGCRPNVITYTIVMHALGKAGRTQEALDVFDKVKRDGCVPDASFYN 373

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
           ++I +L +   +E+A  VF+EM   G  P    +N +I   C   + E AL+ + +M++ 
Sbjct: 374 SIIYILGRAGRLEDANSVFDEMCRTGIPPTVAIFNTMISAACDHSQAENALKILVKMEEQ 433

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
            C+P+++TY  L++  C    ++    L   M      P+  TY +L++ +    K    
Sbjct: 434 SCKPDIKTYTPLLKLCCKRQWMKILPFLICHMFRKDISPDFSTYILLVTWLCRNGKPAQS 493

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
            +    L EMV +GFMP++ TF+ V+  L         K+I  L+ R   L
Sbjct: 494 CL---FLEEMVLKGFMPKQETFDLVMEKLDKGNLHSAKKKIQHLKLRAAAL 541


>gi|115436822|ref|NP_001043145.1| Os01g0505500 [Oryza sativa Japonica Group]
 gi|56201654|dbj|BAD73118.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113532676|dbj|BAF05059.1| Os01g0505500 [Oryza sativa Japonica Group]
 gi|125570544|gb|EAZ12059.1| hypothetical protein OsJ_01942 [Oryza sativa Japonica Group]
          Length = 540

 Score =  214 bits (546), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 130/483 (26%), Positives = 234/483 (48%), Gaps = 14/483 (2%)

Query: 16  FCIYRG----LSPLTTTSPAP----LPPAAADPAALASLILTSTDPRTLTQTLHCPSLHW 67
           FC   G    + P  T  P      L P  ++ A     ++++     +   L    +  
Sbjct: 59  FCTTVGSESDVEPRFTVVPGAAQEGLAPGVSEAAERVCRVVSAQPEHRIAPVLDALGVTV 118

Query: 68  TPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVH 127
           +PQLV +++K L N  + AL FF        + +S   F + I+   +++ +R VW+LV 
Sbjct: 119 SPQLVAEVLKNLSNAGILALAFFRWAERQQGFRYSAEGFHNLIEALGKIKQFRLVWSLVE 178

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
            M+  S   ++ TF II  RY  A K   AV+ F  M   G +  L+ +N ++D+L K K
Sbjct: 179 AMRCRSC-LSKDTFKIIVRRYARARKVKEAVETFEKMSSFGLKTDLSDYNWLIDILSKSK 237

Query: 188 KVEKAYNLFKVFR--GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
           +V+KA+ +FK  +  G+F  D+ +Y V+  GW   K       V +EM+D G+ P++  Y
Sbjct: 238 QVKKAHAIFKEMKRKGRFIPDLKTYTVLMEGWGHEKDLLMLKAVYQEMLDAGIKPDVVAY 297

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
            +++  + ++G+ +EA + F EM++  C      Y  +++G G +  +  A   F     
Sbjct: 298 GMLISAFCKSGKCDEAIKVFHEMEESGCMPSPHVYCMLINGLGSMERLDEALKYFQLSKE 357

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G    V T NA+I   C+     +A  + +EM   G  PN+ TY++++  L  + ++E 
Sbjct: 358 SGFPMEVPTCNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEE 417

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           A     RM+ D CEP + TY +++  FC    ++  L+++++M     LP +  ++ LI+
Sbjct: 418 AYNLFQRMERDGCEPELNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSALIN 477

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
            +    + ++  V      EM+D+G  P    F+ +   L+  G   LA+E+ +      
Sbjct: 478 GLCFENRLEEACV---YFQEMLDKGIRPPGQLFSNLKEALVEGGRITLAQEVTQRLEMLR 534

Query: 486 RLP 488
           R P
Sbjct: 535 RTP 537


>gi|125526112|gb|EAY74226.1| hypothetical protein OsI_02107 [Oryza sativa Indica Group]
          Length = 540

 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 130/483 (26%), Positives = 234/483 (48%), Gaps = 14/483 (2%)

Query: 16  FCIYRG----LSPLTTTSPAP----LPPAAADPAALASLILTSTDPRTLTQTLHCPSLHW 67
           FC   G    + P  T  P      L P  ++ A     ++++     +   L    +  
Sbjct: 59  FCTTVGSESDVEPRFTVVPGAAQEGLAPGVSEAAERVCRVVSAQPEHRIAPVLDALGVTV 118

Query: 68  TPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVH 127
           +PQLV +++K L N  + AL FF        + +S   F + I+   +++ +R VW+LV 
Sbjct: 119 SPQLVAEVLKNLSNAGILALAFFRWAERQQGFRYSAEGFHNLIEALGKIKQFRLVWSLVE 178

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
            M+  S   ++ TF II  RY  A K   AV+ F  M   G +  L+ +N ++D+L K K
Sbjct: 179 AMRCRSC-LSKDTFKIIVRRYARARKVKEAVETFEKMSSFGLKTDLSDYNWLIDILSKSK 237

Query: 188 KVEKAYNLFKVFR--GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
           +V+KA+ +FK  +  G+F  D+ +Y V+  GW   K       V +EM+D G+ P++  Y
Sbjct: 238 QVKKAHAIFKEMKRKGRFIPDLKTYTVLMEGWGHEKDLLMLKAVYQEMLDAGIKPDVVAY 297

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
            +++  + ++G+ +EA + F EM++  C      Y  +++G G +  +  A   F     
Sbjct: 298 GMLISAFCKSGKCDEAIKVFHEMEESGCMPSPHVYCMLINGLGSMERLDEALKYFQLSKE 357

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G    V T NA+I   C+     +A  + +EM   G  PN+ TY++++  L  + ++E 
Sbjct: 358 SGFPMEVPTCNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEE 417

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           A     RM+ D CEP + TY +++  FC    ++  L+++++M     LP +  ++ LI+
Sbjct: 418 AYNLFQRMERDGCEPELNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSALIN 477

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
            +    + ++  V      EM+D+G  P    F+ +   L+  G   LA+E+ +      
Sbjct: 478 GLCFDNRLEEACV---YFQEMLDKGIRPPGQLFSNLKEALVEGGRITLAQEVTQRLEMLR 534

Query: 486 RLP 488
           R P
Sbjct: 535 RTP 537


>gi|308082018|ref|NP_001183846.1| uncharacterized protein LOC100502439 [Zea mays]
 gi|238014984|gb|ACR38527.1| unknown [Zea mays]
 gi|414872746|tpg|DAA51303.1| TPA: hypothetical protein ZEAMMB73_971718 [Zea mays]
          Length = 623

 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 124/450 (27%), Positives = 212/450 (47%), Gaps = 8/450 (1%)

Query: 21  GLSPLTTTSPAPLPPAAADPAA---LASLILTS--TDPRTLTQTLHCPSLHWTPQLVDQI 75
           G SPL+  +  P     A+  A     S IL S    P  +  T+ C  +  + +LV ++
Sbjct: 110 GSSPLSILASCPASHEDAEFEADMDEVSRILRSRFASPEAIVITMDCCPVRVSARLVSKV 169

Query: 76  IKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLG 135
           + R  N  + A  FF        Y H   S+D  +D+  + + +  +  L+ +M  +   
Sbjct: 170 LSRFSNDWVAAFGFFMWAGTQEGYCHCADSYDMMVDILGKFKQFDLMCGLIGQMHEIGGL 229

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
            +  T   +  R   A +   A+  F  M   G  +   + N +LD LCKE+ V++A   
Sbjct: 230 VSLATMTKVMRRLCGANRWSDAIDAFHKMDRFGVAKDTKAMNVLLDTLCKERSVKRARGA 289

Query: 196 FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
           F+  +G    D  S+N + +GWC  +   +A E +KEM   G +P++TTY  +++ Y   
Sbjct: 290 FQALKGTIPPDESSFNTLVHGWCKARMLKEARETMKEMERHGFSPSVTTYTCLIEAYCME 349

Query: 256 GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
              +       EM  + C  +++TYT ++H  G  G  + A + FD +   G     + Y
Sbjct: 350 KDFQTVDGILDEMHTKGCTPNIITYTIVMHALGKAGRTQEALDTFDKVKQDGCALDASFY 409

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           N +I +LC+   +++A  V EEM   G  PN TT+N +I   C     E AL+ + +M++
Sbjct: 410 NCLIYILCRAGRLQDANFVVEEMHRTGISPNLTTFNTLISAACDHSLAENALKLLVQMEE 469

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
             C P+++TY  L++  C    ++  L L   M      P+  TY +L+  +    ++  
Sbjct: 470 QSCNPDIKTYTPLLKLCCRRKWVKTLLFLICHMFRKDITPDFSTYTLLVCWLC---RNGR 526

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           L  +   L EMV +GF P++ TF+ VL  L
Sbjct: 527 LTQSCLFLEEMVLKGFTPQQATFDLVLEKL 556


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 125/387 (32%), Positives = 199/387 (51%), Gaps = 5/387 (1%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           S+F+  I    R    R    ++  M S  L P +KTF  I + Y+  G  D A++I   
Sbjct: 190 STFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQ 249

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK--FKADVISYNVIANGWCLVK 221
           M E GC  S  S N I+   CKE +VE A N  +    +  F  D  ++N + NG C   
Sbjct: 250 MVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAG 309

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
               A+E++  M+  G +P++ TYN V+ G  + G+++EA  F  +M  R C  + VTY 
Sbjct: 310 HVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYN 369

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
           T++       +++ A  +   + + G+LP V T+N++IQ LC   +   A+ +FEEM  K
Sbjct: 370 TLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSK 429

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
           G  P+  TYN++I  LC  G+++ AL  + +M+   C  +V TYN LI  FC A +I   
Sbjct: 430 GCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREA 489

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
            E+F++M       N  TYN LI  +   ++ +D   A +L+ +M+  G  P KFT+N +
Sbjct: 490 EEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVED---ASQLMDQMIMEGQKPDKFTYNSL 546

Query: 462 LNGLLLIGNQGLAKEILRLQSRCGRLP 488
           L      G+   A +I++  +  G  P
Sbjct: 547 LTHFCRGGDIKKAADIVQAMTSNGCEP 573



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 124/424 (29%), Positives = 206/424 (48%), Gaps = 14/424 (3%)

Query: 70  QLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRM 129
           +L+D +  +  + A  AL  FN+ S  P ++  P+ ++  +    R   +  +  ++  M
Sbjct: 52  KLLDSLRSQADDSA--ALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMRKILEDM 109

Query: 130 KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM-HEHGCRQSLNSFNTILDLLCKE-- 186
           K+         F I+ E Y      D  + +   M  + G +   + +N +L+LL     
Sbjct: 110 KNSGCEMGTSPFLILIESYAQFELQDEILGVVHWMIDDFGLKPDTHFYNRMLNLLVDGNN 169

Query: 187 -KKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
            K VE A+    V+    K DV ++NV+    C   +   A+ +L++M   GL P+  T+
Sbjct: 170 LKLVEIAHAKMSVW--GIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTF 227

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
             +++GY   G ++ A R   +M +  C    V+   IVHGF   G ++ A N    M N
Sbjct: 228 TTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSN 287

Query: 306 -GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
             G  P   T+N ++  LCK   V++AI + + M+ +GY P+  TYN VI GLC  GE++
Sbjct: 288 QDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVK 347

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
            A+EF+ +M   +C PN  TYN LI   C   ++E   EL   + S   LP++ T+N LI
Sbjct: 348 EAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLI 407

Query: 425 SSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ--S 482
             + + +      VA +L  EM  +G  P +FT+N +++ L   G    A  +L+    S
Sbjct: 408 QGLCLTRNHR---VAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELS 464

Query: 483 RCGR 486
            C R
Sbjct: 465 GCAR 468



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 107/384 (27%), Positives = 188/384 (48%), Gaps = 9/384 (2%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           AL+F   +S    +     +F+  ++   +    +    ++  M      P   T+  + 
Sbjct: 278 ALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVI 337

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FK 204
                 G+   AV+    M    C  +  ++NT++  LCKE +VE+A  L +V   K   
Sbjct: 338 SGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGIL 397

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
            DV ++N +  G CL +    A+E+ +EM  +G  P+  TYN+++      G+++EA   
Sbjct: 398 PDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNM 457

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
             +M+   C   V+TY T++ GF    +I+ A  +FD M   GV  +  TYN +I  LCK
Sbjct: 458 LKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCK 517

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
              VE+A  + ++M+ +G  P+  TYN ++   C  G++++A + V  M  + CEP++ T
Sbjct: 518 SRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVT 577

Query: 385 YNILIRYFCDAGEIERGLELFEKMG-SGVCL-PNLDTYNILISSMFVRKKSDDLLVAGKL 442
           Y  LI   C AG +E   +L   +   G+ L P+   YN +I  +F ++K+ +   A  L
Sbjct: 578 YGTLISGLCKAGRVEVASKLLRSIQMKGIALTPH--AYNPVIQGLFRKRKTTE---AINL 632

Query: 443 LIEMVDRG-FMPRKFTFNRVLNGL 465
             EM+++    P   ++  V  GL
Sbjct: 633 FREMLEQNEAAPDAVSYRIVFRGL 656



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 136/269 (50%), Gaps = 3/269 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  I      R++R    L   M+S    P + T+ ++ +   S GK D A+ +   M
Sbjct: 402 TFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQM 461

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRT 223
              GC +S+ ++NT++D  CK  K+ +A  +F          + ++YN + +G C  +R 
Sbjct: 462 ELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRV 521

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
             A +++ +M+  G  P+  TYN +L  + R G I++A      M    CE D+VTY T+
Sbjct: 522 EDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTL 581

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG- 342
           + G    G ++ A  +   +   G+  +   YN +IQ L +K     AI +F EM+ +  
Sbjct: 582 ISGLCKAGRVEVASKLLRSIQMKGIALTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNE 641

Query: 343 YMPNSTTYNVVIRGLCH-TGEMERALEFV 370
             P++ +Y +V RGLC+  G +  A++F+
Sbjct: 642 AAPDAVSYRIVFRGLCNGGGPIREAVDFL 670


>gi|356540361|ref|XP_003538658.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Glycine max]
          Length = 523

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 135/468 (28%), Positives = 229/468 (48%), Gaps = 20/468 (4%)

Query: 7   KPPKNHLHFFCIYRGLSPLTTTSPAPLPPAAADPAALASLILTSTDPR----TLTQTLHC 62
           KP  +H H F       P    S   LP    + + L S      D R     L  +L+ 
Sbjct: 24  KPSYHHFHSF-------PTPQVSGPLLPDLVNEISRLLS------DHRYPHHDLELSLNP 70

Query: 63  PSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTV 122
            S   +  LVDQ++KR  N    A  FF      P + HS  SF   +++    + +  +
Sbjct: 71  FSAQISTNLVDQVLKRCNNLGFSAHRFFLWAKSIPGFQHSVMSFHILVEILGSCKQFAIL 130

Query: 123 WTLVHRMK-SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
           W  +  M+ S       + F +I   Y  A   D A++ F  M E G + ++N F+ +L 
Sbjct: 131 WDFLIEMRGSCHYEINSEIFWLIFRAYSQANLPDGAIRSFNRMDEFGIKPTINDFDKLLF 190

Query: 182 LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           +LCK K V++A   F   + +F     +Y+++ +GW  +  + KA E+ + M+++G   +
Sbjct: 191 ILCKTKHVKQAQQFFDQAKNRFLLTAKTYSILISGWGDIGDSEKAHELFQAMLEQGCPVD 250

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           L  YN +L+   + G ++EA   F +M  ++ E D  TY+  +H +    +++ A  V D
Sbjct: 251 LLAYNNLLQALCKGGCVDEAKTIFHDMLSKRVEPDAFTYSIFIHSYCDADDVQSALRVLD 310

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M    +LP+V TYN +I+ LCK + VE A L+ +EM+ +G  P++ +YN +    C   
Sbjct: 311 KMRRYNILPNVFTYNCIIKRLCKNEHVEEAYLLLDEMISRGVRPDTWSYNAIQAYHCDHC 370

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
           E+ RA+  + RM+ D C P+  TYN++++     G  ++  +++  MG     P++ TY+
Sbjct: 371 EVNRAIRLMFRMEKDNCLPDRHTYNMVLKLLIRIGRFDKVTKVWGNMGDKKFYPSVSTYS 430

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
           ++I   F +KK   L  A K    M+D G  P   T   + N LL +G
Sbjct: 431 VMIHG-FCKKKG-KLEEACKYFEMMIDEGIPPYVTTVEMLRNQLLGLG 476


>gi|326524964|dbj|BAK04418.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 565

 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 125/453 (27%), Positives = 224/453 (49%), Gaps = 7/453 (1%)

Query: 27  TTSPAPLPPAAADPAALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKA 86
           T  P P    + +   +  ++ T  +PR +   L       +PQLV +++K L N  + A
Sbjct: 104 TVVPGPGLDVSEEAERVCRVLSTLPEPR-VPAALDALGASVSPQLVAEVLKNLSNAGILA 162

Query: 87  LHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAE 146
           L FF        + ++  SF + I+   +++ +R VW+LV  M+   L  ++ TF +I  
Sbjct: 163 LAFFRWAERQQGFVYTADSFHNLIEALGKIKQFRLVWSLVEAMRCRGL-LSKDTFRLIVR 221

Query: 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR--GKFK 204
           RY  A K   AV+ F  M   G +  L+ +N ++D+L K K+V+KA+ +FK  +  G+F 
Sbjct: 222 RYARARKVKEAVETFEKMAGFGLKADLSDYNWLIDVLSKSKQVKKAHAIFKEMKRNGRFV 281

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
            D+ +Y V+  GW   K       V +EM+D GL P++  Y +++  + ++G+ +EA + 
Sbjct: 282 PDLKTYTVLMEGWGHEKDLLMLKSVYQEMLDAGLQPDVVAYGMLISSFCKSGKCDEAIKV 341

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
           F EM+   C      Y  +++G G    +  A   F+     G    V T NA++   C+
Sbjct: 342 FREMETNGCMPSPHVYCMLINGLGSEERLDEALKYFELSKASGFPMEVPTCNAVVGAYCR 401

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
               ++A  + +EM   G  PNS TY++++  L  + ++E A      M  D CEP + T
Sbjct: 402 SSKFQHAFKMVDEMRKSGIGPNSRTYDIILHHLIKSQKIEEAYNVFQGMSKDGCEPQLNT 461

Query: 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLI 444
           Y +++  FC    ++  L+++ +M     LP +  ++ LI+ +    + ++   A     
Sbjct: 462 YTMMVGMFCSNERVDVALKVWNQMKEKGVLPCMHMFSALINGLCFENRLEE---ACAYFQ 518

Query: 445 EMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
           EM+DRG  P    F+ +   L+  G   LA+E+
Sbjct: 519 EMLDRGIRPPGQLFSNLKEALIEGGRISLAQEM 551



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 131/262 (50%), Gaps = 3/262 (1%)

Query: 117 RDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSF 176
           +D   + ++   M    L P    + ++   +  +GK D A+K+F  M  +GC  S + +
Sbjct: 298 KDLLMLKSVYQEMLDAGLQPDVVAYGMLISSFCKSGKCDEAIKVFREMETNGCMPSPHVY 357

Query: 177 NTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235
             +++ L  E+++++A   F++ +   F  +V + N +   +C   +   A +++ EM  
Sbjct: 358 CMLINGLGSEERLDEALKYFELSKASGFPMEVPTCNAVVGAYCRSSKFQHAFKMVDEMRK 417

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
            G+ PN  TY+I+L    ++ +IEEA+  F  M K  CE  + TYT +V  F     +  
Sbjct: 418 SGIGPNSRTYDIILHHLIKSQKIEEAYNVFQGMSKDGCEPQLNTYTMMVGMFCSNERVDV 477

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
           A  V++ M   GVLP +  ++A+I  LC ++ +E A   F+EM+ +G  P    ++ +  
Sbjct: 478 ALKVWNQMKEKGVLPCMHMFSALINGLCFENRLEEACAYFQEMLDRGIRPPGQLFSNLKE 537

Query: 356 GLCHTGEMERALEFVGRMKDDE 377
            L   G +  A E    +K DE
Sbjct: 538 ALIEGGRISLAQEMA--LKLDE 557



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 38/183 (20%), Positives = 84/183 (45%), Gaps = 5/183 (2%)

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G + +  +++ +I+ L K         + E M  +G + +  T+ +++R      +++ A
Sbjct: 174 GFVYTADSFHNLIEALGKIKQFRLVWSLVEAMRCRGLL-SKDTFRLIVRRYARARKVKEA 232

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG-SGVCLPNLDTYNILIS 425
           +E   +M     + ++  YN LI     + ++++   +F++M  +G  +P+L TY +L+ 
Sbjct: 233 VETFEKMAGFGLKADLSDYNWLIDVLSKSKQVKKAHAIFKEMKRNGRFVPDLKTYTVLME 292

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
                K   DLL+   +  EM+D G  P    +  +++     G    A ++ R     G
Sbjct: 293 GWGHEK---DLLMLKSVYQEMLDAGLQPDVVAYGMLISSFCKSGKCDEAIKVFREMETNG 349

Query: 486 RLP 488
            +P
Sbjct: 350 CMP 352


>gi|255552099|ref|XP_002517094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543729|gb|EEF45257.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 549

 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 117/411 (28%), Positives = 210/411 (51%), Gaps = 3/411 (0%)

Query: 55  TLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAA 114
           ++ Q L+   ++ T  L+ Q++ R  N  + AL  F    +   Y H P  +D  +D+  
Sbjct: 117 SVVQALNDCGVNPTNNLISQLLNRFCNDWVPALGLFTWAKHQTGYVHPPDLYDLMVDILG 176

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           R + +  +W LV  M++L    +  T   +  R   AG    AV+ F  + + G R+ + 
Sbjct: 177 RRKKFSFMWELVKEMENLEGYVSLVTMKKVMRRLARAGNFQDAVEAFRGIEKLGVRKDIE 236

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           + N ++D L KE  VE AY+ F  F+     D  S+N++ +G+C  ++ + A +++ EM 
Sbjct: 237 ALNVLMDALVKEGSVEHAYSAFMEFKDSIHVDFQSFNILLHGYCKARKLDDARKIMDEMD 296

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
            +G  PN+ +Y   ++ Y +          F EM+++ C+ +V+TYT  +H  G   ++ 
Sbjct: 297 KQGFQPNVVSYTCFIELYCKLKDFRNVEAIFSEMQEKSCKPNVITYTIFMHALGKAKQVN 356

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
           +A  V++ M +   +P  + Y+++I VL +   +++A  VFE+M  +G  P+  TYN +I
Sbjct: 357 KALEVYEMMKSNCCVPDASFYSSLIFVLTQSGRLKDAWDVFEDMKKQGVSPDLLTYNTMI 416

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
              C   E E AL+ + RM++D C+P++QTY  L++  C    I+    L   M      
Sbjct: 417 TSACTHLEEENALKLLRRMEEDSCKPDIQTYAPLLKMCCRKKRIKVLKFLLNHMFKNNIS 476

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            +L TY +L+  +    KS  L +A     EMV +G +PR  T+  ++  L
Sbjct: 477 IDLGTYVLLVGGLC---KSGKLELACSFFEEMVMKGLIPRDRTYKMLVEEL 524



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 116/227 (51%), Gaps = 3/227 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S+   I+L  +L+D+R V  +   M+  S  P   T+ I       A + ++A++++  M
Sbjct: 306 SYTCFIELYCKLKDFRNVEAIFSEMQEKSCKPNVITYTIFMHALGKAKQVNKALEVYEMM 365

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
             + C    + +++++ +L +  +++ A+++F+  + +    D+++YN +    C     
Sbjct: 366 KSNCCVPDASFYSSLIFVLTQSGRLKDAWDVFEDMKKQGVSPDLLTYNTMITSACTHLEE 425

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL-EMKKRKCEIDVVTYTT 282
             AL++L+ M +    P++ TY  +LK   R  +I+   +F L  M K    ID+ TY  
Sbjct: 426 ENALKLLRRMEEDSCKPDIQTYAPLLKMCCRKKRIK-VLKFLLNHMFKNNISIDLGTYVL 484

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
           +V G    G+++ A + F+ MV  G++P   TY  +++ L + +  E
Sbjct: 485 LVGGLCKSGKLELACSFFEEMVMKGLIPRDRTYKMLVEELEQNNLTE 531


>gi|225431703|ref|XP_002264696.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial [Vitis vinifera]
 gi|296088528|emb|CBI37519.3| unnamed protein product [Vitis vinifera]
          Length = 525

 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 133/458 (29%), Positives = 231/458 (50%), Gaps = 24/458 (5%)

Query: 25  LTTTSPAPLPPAAADPAALASLILTSTDP-RTLTQTLHCPSLHWTPQLVDQIIKRLWNHA 83
           L+T  P+  P   AD   ++ ++L   +P   +  +L    +  +  LV Q + RL N +
Sbjct: 40  LSTGLPSLQPSYDAD--LISKILLQHHNPFHAMESSLQLNGIALSTHLVHQTLLRLRNVS 97

Query: 84  LKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAI 143
             AL FF        ++H   S++  ID+ A++R +   W  +  M   SL PT  TF I
Sbjct: 98  KIALSFFLWAKDQAHHSHDVVSYNLIIDILAKVRQFDVAWQFIIEMDQNSLEPTSTTFRI 157

Query: 144 IAERYVSAGKADRAVKIFLSMHEHGC----RQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           +  R VSAG   +AV+ F  M    C        + F  +LD L K   V+ A  +F   
Sbjct: 158 LIRRSVSAGLTRQAVRAFDDM---SCFVEKDADSDDFCYLLDTLSKYGYVKLASQIFNQR 214

Query: 200 RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ-- 257
           + KF+A+   Y ++  GWC + R + A  +L EMV+RG+  N+ TYN++L G  R     
Sbjct: 215 KFKFEANAKMYTILIYGWCKINRVSIAERLLGEMVERGIEANVVTYNVLLNGICRRASLH 274

Query: 258 --------IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
                   I +A +   EM+++  E DV +Y+ ++H +    + +   +    M + G+ 
Sbjct: 275 PDDRFERTIRDAEKVLDEMRQKGIEPDVTSYSIVIHVYSRAHKPELTLDKLRMMKDKGIW 334

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           P+VATY ++++ LC    +E+A  +  +MV  G  P++ TYN   +      + + AL  
Sbjct: 335 PTVATYTSVVKCLCSCGRLEDAEELVSDMVKDGVSPSAATYNCFFKEYRGRKDSDNALRL 394

Query: 370 VGRMKDD-ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
             +MK++  C P++ TYNIL+  F     +E   E+++ M +    P+LD+Y +LI  + 
Sbjct: 395 YRKMKEEYSCLPDMHTYNILVGMFVKLNRMEIVQEIWDDMKTSGAGPDLDSYTLLIHGLC 454

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
            ++K  +   A    +EM+++G++P+K TF  +  GL+
Sbjct: 455 EKQKWKE---ACHFFVEMIEKGYLPQKITFETLYRGLI 489



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/212 (20%), Positives = 95/212 (44%), Gaps = 2/212 (0%)

Query: 117 RDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSF 176
           R  R    ++  M+   + P   +++I+   Y  A K +  +     M + G   ++ ++
Sbjct: 281 RTIRDAEKVLDEMRQKGIEPDVTSYSIVIHVYSRAHKPELTLDKLRMMKDKGIWPTVATY 340

Query: 177 NTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235
            +++  LC   ++E A  L   + +        +YN     +   K ++ AL + ++M +
Sbjct: 341 TSVVKCLCSCGRLEDAEELVSDMVKDGVSPSAATYNCFFKEYRGRKDSDNALRLYRKMKE 400

Query: 236 R-GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
                P++ TYNI++  + +  ++E     + +MK      D+ +YT ++HG     + K
Sbjct: 401 EYSCLPDMHTYNILVGMFVKLNRMEIVQEIWDDMKTSGAGPDLDSYTLLIHGLCEKQKWK 460

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
            A + F  M+  G LP   T+  + + L + D
Sbjct: 461 EACHFFVEMIEKGYLPQKITFETLYRGLIQSD 492


>gi|147767583|emb|CAN60200.1| hypothetical protein VITISV_039678 [Vitis vinifera]
          Length = 525

 Score =  211 bits (537), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 133/458 (29%), Positives = 230/458 (50%), Gaps = 24/458 (5%)

Query: 25  LTTTSPAPLPPAAADPAALASLILTSTDP-RTLTQTLHCPSLHWTPQLVDQIIKRLWNHA 83
           L+T  P+  P   AD   ++ ++L   +P   +  +L    +  +  LV Q + RL N +
Sbjct: 40  LSTGLPSLQPSYDAD--LISKILLQHHNPFHAMESSLQLNGIALSTHLVHQTLLRLRNVS 97

Query: 84  LKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAI 143
             AL FF        ++H   S++  ID+ A++R +   W  +  M   SL PT  TF I
Sbjct: 98  KIALSFFLWAKDQAHHSHDVVSYNLIIDILAKVRQFDVAWQFIIEMDQNSLEPTSTTFRI 157

Query: 144 IAERYVSAGKADRAVKIFLSMHEHGC----RQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           +  R VSAG   +AV+ F  M    C        + F  +LD L K   V+ A  +F   
Sbjct: 158 LIRRSVSAGLTRQAVRAFDDM---SCFVEKDADSDDFCYLLDTLSKYGYVKLASQIFNQR 214

Query: 200 RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ-- 257
           + KF+A+   Y ++  GWC + R + A  +L EMV+RGJ  N+ TYN++L G  R     
Sbjct: 215 KFKFEANAKMYTILIYGWCKINRVSIAERLLGEMVERGJXANVVTYNVLLNGICRXASLH 274

Query: 258 --------IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
                   I +A +   EM++   E DV +Y+ ++H +    + +   +    M + G+ 
Sbjct: 275 PDDRFERTIRDAEKVLDEMRQXGIEPDVTSYSIVIHVYSRAHKPELTLDKLRMMKDKGIW 334

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           P+VATY ++++ LC    +E+A  +  +MV  G  P++ TYN   +      + + AL  
Sbjct: 335 PTVATYTSVVKCLCSCGRLEDAEELVSDMVKDGVSPSAATYNCFFKEYRGRKDSDNALRL 394

Query: 370 VGRMKDD-ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
             +MK++  C P++ TYNIL+  F     +E   E+++ M +    P+LD+Y +LI  + 
Sbjct: 395 YRKMKEEYSCLPDMHTYNILVGMFVKLNRMEIVQEIWDDMKTSGAGPDLDSYTLLIHGLC 454

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
            ++K  +   A    +EM+++G++P+K TF  +  GL+
Sbjct: 455 EKQKWKE---ACHFFVEMIEKGYLPQKITFETLYRGLI 489



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/212 (20%), Positives = 95/212 (44%), Gaps = 2/212 (0%)

Query: 117 RDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSF 176
           R  R    ++  M+   + P   +++I+   Y  A K +  +     M + G   ++ ++
Sbjct: 281 RTIRDAEKVLDEMRQXGIEPDVTSYSIVIHVYSRAHKPELTLDKLRMMKDKGIWPTVATY 340

Query: 177 NTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235
            +++  LC   ++E A  L   + +        +YN     +   K ++ AL + ++M +
Sbjct: 341 TSVVKCLCSCGRLEDAEELVSDMVKDGVSPSAATYNCFFKEYRGRKDSDNALRLYRKMKE 400

Query: 236 R-GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
                P++ TYNI++  + +  ++E     + +MK      D+ +YT ++HG     + K
Sbjct: 401 EYSCLPDMHTYNILVGMFVKLNRMEIVQEIWDDMKTSGAGPDLDSYTLLIHGLCEKQKWK 460

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
            A + F  M+  G LP   T+  + + L + D
Sbjct: 461 EACHFFVEMIEKGYLPQKITFETLYRGLIQSD 492


>gi|122236160|sp|Q0WP85.1|PP150_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g13420, mitochondrial; Flags: Precursor
 gi|110738270|dbj|BAF01064.1| hypothetical protein [Arabidopsis thaliana]
          Length = 509

 Score =  211 bits (537), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 137/485 (28%), Positives = 247/485 (50%), Gaps = 31/485 (6%)

Query: 1   MFALLRKPPKNHLHFFCIYRGLSPLTT---TSPAPLPPAAADPAALASLILTSTDP-RTL 56
           M  L +  P  HLH   + R +S + +   T   P    ++D   ++ +++T+ +P   +
Sbjct: 1   MLLLKQISPPFHLH--QLRRRISTIISAGFTLNLPKLEPSSDAELISQMLITNHNPFHFM 58

Query: 57  TQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARL 116
             +L    +  TP L+ Q + RL +++  AL FF  L   P+ + +P+SF+  ID+  R+
Sbjct: 59  ESSLQLNGISLTPNLIHQTLLRLRHNSKIALSFFQYLRSLPSPSTTPTSFNLIIDILGRV 118

Query: 117 RDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC-----RQ 171
           R +  V  L+  M   S     +TF I+ +R ++AG   +AV+ F    +  C     R 
Sbjct: 119 RQFDVVRQLIVEMDQTS----PETFLILVKRLIAAGLTRQAVRAF---DDAPCFLENRRF 171

Query: 172 SLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLK 231
            L  F  +LD LCK    + A  +F   + +F +D   Y ++  GWC ++R + A + L 
Sbjct: 172 RLVEFGFLLDTLCKYGYTKMAVGVFNERKEEFGSDEKVYTILIAGWCKLRRIDMAEKFLV 231

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF----------FLEMKKRKCEIDVVTYT 281
           EM++ G+ PN+ TYN++L G  R   +    RF          F EM++R  E DV +++
Sbjct: 232 EMIESGIEPNVVTYNVLLNGICRTASLHPEERFERNVRNAEKVFDEMRQRGIEPDVTSFS 291

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
            ++H +    + +   +    M   G+ P++ TY ++++ LC    +E A  + E MV  
Sbjct: 292 IVLHMYSRAHKAELTLDKMKLMKAKGISPTIETYTSVVKCLCSCGRLEEAEELLETMVES 351

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
           G  P+S TYN   +      +   A+    +MK+  C+P+ QTYN+L+  F + G++E  
Sbjct: 352 GISPSSATYNCFFKEYKGRKDANGAMNLYRKMKNGLCKPSTQTYNVLLGTFINLGKMETV 411

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
            E+++ + +    P+LD+Y  L+  +  ++K  +   A    +EM++RGF+P+K TF  +
Sbjct: 412 KEIWDDLKASETGPDLDSYTSLVHGLCSKEKWKE---ACGYFVEMIERGFLPQKLTFETL 468

Query: 462 LNGLL 466
             GL+
Sbjct: 469 YKGLI 473



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 101/208 (48%), Gaps = 1/208 (0%)

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVI-SYNVIAN 215
           A K+F  M + G    + SF+ +L +  +  K E   +  K+ + K  +  I +Y  +  
Sbjct: 271 AEKVFDEMRQRGIEPDVTSFSIVLHMYSRAHKAELTLDKMKLMKAKGISPTIETYTSVVK 330

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
             C   R  +A E+L+ MV+ G++P+  TYN   K Y        A   + +MK   C+ 
Sbjct: 331 CLCSCGRLEEAEELLETMVESGISPSSATYNCFFKEYKGRKDANGAMNLYRKMKNGLCKP 390

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
              TY  ++  F  +G+++  + ++D +      P + +Y +++  LC K+  + A   F
Sbjct: 391 STQTYNVLLGTFINLGKMETVKEIWDDLKASETGPDLDSYTSLVHGLCSKEKWKEACGYF 450

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            EM+ +G++P   T+  + +GL  + +M
Sbjct: 451 VEMIERGFLPQKLTFETLYKGLIQSNKM 478


>gi|356534319|ref|XP_003535704.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Glycine max]
          Length = 507

 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 133/451 (29%), Positives = 224/451 (49%), Gaps = 12/451 (2%)

Query: 27  TTSPAPLPPAAADPAALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKA 86
           T  P P P A A        IL++T   T+   L       +P+LV +++ +L N  + A
Sbjct: 49  TAQPRPTPDAEA-----ICRILSTTPASTVDACLAAVPAKPSPELVLEVLNKLSNAGVLA 103

Query: 87  LHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAE 146
           L FF        + H+  +F   I+   ++R ++ +WTLV+ MK   L  T  TF+++A 
Sbjct: 104 LSFFRWAEKQSEFKHTTEAFHALIEALGKIRQFKMIWTLVNDMKQRKL-LTSDTFSLVAR 162

Query: 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKA 205
           RY  A KA  A+K F  M  +G +  ++ FN ++D+LCK K VE+A+ +F   R  +   
Sbjct: 163 RYARARKAKEAIKTFEKMEHYGLKPHVSDFNKLVDVLCKSKSVEEAHEVFDKMRKLRLDP 222

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           D+ SY ++  GW   +   K  EV +EM D+G   ++  Y I++  + +A + +EA   +
Sbjct: 223 DIKSYTILLEGWSQQQNLIKVNEVCREMEDKGFQLDVVAYGIIMNAHCKAKKFDEAIGLY 282

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
            EMK R        Y T+++G G    +  A   F+     G +P   TYNA++   C  
Sbjct: 283 HEMKARGVRPSPHVYCTLINGLGSDKRLDEALEFFEVSKASGFVPEAPTYNAVVGAYCWS 342

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE--CEPNVQ 383
             +++A  +  EM   G  PNS T+++V+  L     +E A     RM   E  CEP+V 
Sbjct: 343 LRMDDAYRMVGEMKKCGIGPNSRTFDIVLHHLIKGRRIEEASSVFRRMNGGEFGCEPSVS 402

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
           TY I++R FC+   ++  + ++++M     LP +  ++ L+ ++    K D+   A K  
Sbjct: 403 TYEIMVRMFCNEELLDMAVAVWDEMKGKGILPGMHMFSTLVCALCHESKLDE---ACKYF 459

Query: 444 IEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
            EM+D G  P    F+ +   L+  G + +A
Sbjct: 460 QEMLDVGIRPPAKMFSTLKEALVDAGMEHVA 490



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 112/234 (47%), Gaps = 3/234 (1%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
            + II   +  A K D A+ ++  M   G R S + + T+++ L  +K++++A   F+V 
Sbjct: 261 AYGIIMNAHCKAKKFDEAIGLYHEMKARGVRPSPHVYCTLINGLGSDKRLDEALEFFEVS 320

Query: 200 RGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
           +   F  +  +YN +   +C   R + A  ++ EM   G+ PN  T++IVL    +  +I
Sbjct: 321 KASGFVPEAPTYNAVVGAYCWSLRMDDAYRMVGEMKKCGIGPNSRTFDIVLHHLIKGRRI 380

Query: 259 EEAWRFFLEMKKRK--CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
           EEA   F  M   +  CE  V TY  +V  F     +  A  V+D M   G+LP +  ++
Sbjct: 381 EEASSVFRRMNGGEFGCEPSVSTYEIMVRMFCNEELLDMAVAVWDEMKGKGILPGMHMFS 440

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
            ++  LC +  ++ A   F+EM+  G  P +  ++ +   L   G    A+ F 
Sbjct: 441 TLVCALCHESKLDEACKYFQEMLDVGIRPPAKMFSTLKEALVDAGMEHVAMHFT 494


>gi|356495741|ref|XP_003516732.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Glycine max]
          Length = 523

 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 133/468 (28%), Positives = 230/468 (49%), Gaps = 20/468 (4%)

Query: 7   KPPKNHLHFFCIYRGLSPLTTTSPAPLPPAAADPAALASLILTSTDPR----TLTQTLHC 62
           KP  +H H F       P +  S   LP    + + L S      D R     L  +L+ 
Sbjct: 24  KPSYHHFHSF-------PTSQVSGTLLPDLVNEISRLLS------DHRYPHHDLELSLNP 70

Query: 63  PSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTV 122
            S   +  LV+Q++KR  N    A  FF      P + HS  SF   +++    + +  +
Sbjct: 71  FSAQLSTNLVEQVLKRCKNLGFSAHRFFLWAKSIPGFQHSVMSFHILVEILGSCKQFAIL 130

Query: 123 WTLVHRMK-SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
           W  +  M+ S       + F +I   Y  A   D A++ F  M E G + +++  + +L 
Sbjct: 131 WDFLTEMRESHHYEINSEIFWLIFRAYSQANLPDGAIRSFNRMDEFGVKPTIHDLDKLLF 190

Query: 182 LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           +LCK K V++A  LF   + +F     +Y+++ +GW  +  + KA ++ + M+++G   +
Sbjct: 191 ILCKRKHVKQAQQLFHQAKNRFSLTAKTYSILISGWGEIGDSEKACDLFQAMLEQGCPVD 250

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           L  YN +L+   + G+++EA   F +M  ++ E D  TY+  +H +    +++ A  V D
Sbjct: 251 LLAYNNLLQALCKGGRVDEAKNIFHDMLSKRVEPDAFTYSIFIHSYCDADDVQSAFRVLD 310

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M    +LP+V TYN +I+ LCK + VE A  + +EM+ +G  P++ +YN +    C   
Sbjct: 311 KMRRYNLLPNVFTYNCIIKQLCKNEHVEEAYQLLDEMISRGVKPDTWSYNAIQAYHCDHC 370

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
           E+ RAL  + RM+ D C P+  TYN++++     G  ++  E++E M      P++ TY+
Sbjct: 371 EVNRALRLMFRMEKDICLPDRHTYNMVLKLLIRIGRFDKVTEVWENMVDKKFYPSVSTYS 430

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
           ++I   F +KK   L  A K    M+D G  P   T   + N LL +G
Sbjct: 431 VMIHG-FCKKKG-KLEEACKYFEMMIDEGIPPYVTTVEMLRNRLLGLG 476


>gi|227463004|gb|ACP39954.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463006|gb|ACP39955.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 547

 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 130/451 (28%), Positives = 227/451 (50%), Gaps = 10/451 (2%)

Query: 39  DPAALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPT 98
           D A + +L+ T +      + L   S+  +P LV +++KRL N  + AL FF        
Sbjct: 94  DAARICTLLSTHSGSHA-DKLLEDASIKVSPSLVVEVLKRLSNAGVIALSFFTWAEKQKG 152

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           + ++  S++  I+   +++ ++ + +LV+ MKS  L   + TFA+I+ R+  A K + A+
Sbjct: 153 FKYNTESYNALIEALGKIKQFKLIRSLVNEMKSRKL-LNKDTFALISRRHARARKVEEAI 211

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGW 217
           + F  M E G +   + FN +LD LCK + VEKA  +F K+ + +F  D+ SY ++  GW
Sbjct: 212 EAFERMEEFGFKLETSDFNRLLDTLCKSRHVEKANKVFDKMKKRRFVPDIKSYTILLEGW 271

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
                  +  EV  EM   G  P++ TY I++  Y +A + + A   F EM+ + C+   
Sbjct: 272 GKEHNLLRLDEVYLEMKYDGFEPDVVTYGILISAYCKAKKYDAAIELFHEMEAKNCKPTP 331

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
             Y T+++G G    +  A   F+   + G  P   TYN+++   C    +++A  V +E
Sbjct: 332 HVYCTLINGLGSEKRLSEALEFFERFKSCGFTPEAPTYNSLVGAYCWSMRIDDAFQVIDE 391

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE-CEPNVQTYNILIRYFCDAG 396
           M      PNS TY++++  L        A     +M ++  CEP V TY I++R FC+  
Sbjct: 392 MRKHSAGPNSRTYDIILHHLIKARRTNEAYFRFQKMSNEPGCEPTVSTYEIIVRMFCNED 451

Query: 397 EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
            ++   +++++M +   LP +  Y+ LI+S+  + K   L  A K   EM+D G  P   
Sbjct: 452 RVDLAKQVWDQMKAKGVLPGMHMYSDLITSLCHKNK---LGEACKYFQEMLDAGIRPPAK 508

Query: 457 TFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
            F+ +   LL   ++G   E L L  +  +L
Sbjct: 509 MFSNLKQALL---DEGKNDEALNLARKINKL 536


>gi|413939122|gb|AFW73673.1| hypothetical protein ZEAMMB73_530264 [Zea mays]
          Length = 526

 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 135/456 (29%), Positives = 227/456 (49%), Gaps = 26/456 (5%)

Query: 33  LPPAAADPAA--LASLILTSTDP----RTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKA 86
           LPP A  PAA  LA L+L   +P     +  Q L    +  +  L+ QI+ RL   +  A
Sbjct: 39  LPPIAPSPAADELARLLLAHHNPFHPAESPLQLLSGGGVSLSGDLLVQILLRLRGASKLA 98

Query: 87  LHFFNILSYHPTYAHS---PSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAI 143
           L   +    HP++ ++     ++D  +D   R R +   W +V    S     + +TFA+
Sbjct: 99  LSLLHAARLHPSFVNTQPRSDAYDAVVDALGRARQFDAAWRVVVD-ASADGAASPRTFAV 157

Query: 144 IAERYVSAGKADRAVKIFLSMHEHGCRQ-SLNSFNTILDLLCKEKKVEKAYNLFKVFRGK 202
           +A RYV+AG   +A++ F  M     R+     F T+LD LCK K  + A  +F   + K
Sbjct: 158 LARRYVAAGMTRQAIRAFDDMEAFVSREPDAAEFATLLDTLCKYKYPKVATEVFNKRKYK 217

Query: 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262
           +  +   Y+++  GWC V R++ A + LK+M+  G+ PN+ TYNI+L G  R   +   +
Sbjct: 218 YGPNEKMYSILIYGWCKVNRSDMAKKFLKDMLVHGIEPNIVTYNILLNGICRHASLHPDY 277

Query: 263 RF----------FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
           RF            EM+ R  E DV +Y+ I+H +    + +    +F  M   G+ P+V
Sbjct: 278 RFDRTVHAAEDLLKEMRGRGIEPDVTSYSIILHVYSRAHKPELCLCMFRSMKERGICPTV 337

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
           ATY ++I+ L     +E+  ++ +EMV +G  P+  TYN  ++      ++  ALE   +
Sbjct: 338 ATYTSVIKCLSSCGRLEDGEILLDEMVAEGVCPSPATYNCFLKEYRGRKDVTAALELYNK 397

Query: 373 MK--DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
           MK       P++ TYNIL+  F         ++++  M      P+LD+Y +LI      
Sbjct: 398 MKAPGSLTAPDIHTYNILLGMFSKLNRHGTVMDIWSDMCESTVGPDLDSYTLLIHCFCDS 457

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
           +K  +   A +  +EM+++GF+P+K TF  +  GL+
Sbjct: 458 QKWRE---ACQFFMEMIEKGFLPQKITFETLYRGLI 490



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 101/241 (41%), Gaps = 27/241 (11%)

Query: 94  SYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGK 153
           S HP Y      FD  +  A           L+  M+   + P   +++II   Y  A K
Sbjct: 272 SLHPDY-----RFDRTVHAAE---------DLLKEMRGRGIEPDVTSYSIILHVYSRAHK 317

Query: 154 ADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYN 211
            +  + +F SM E G   ++ ++ +++  L    ++E    L    V  G   +   +YN
Sbjct: 318 PELCLCMFRSMKERGICPTVATYTSVIKCLSSCGRLEDGEILLDEMVAEGVCPSPA-TYN 376

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRG--LNPNLTTYNIVLKGYF----RAGQIEEAWRFF 265
                +   K    ALE+  +M   G    P++ TYNI+L G F    R G + + W   
Sbjct: 377 CFLKEYRGRKDVTAALELYNKMKAPGSLTAPDIHTYNILL-GMFSKLNRHGTVMDIWS-- 433

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
            +M +     D+ +YT ++H F    + + A   F  M+  G LP   T+  + + L + 
Sbjct: 434 -DMCESTVGPDLDSYTLLIHCFCDSQKWREACQFFMEMIEKGFLPQKITFETLYRGLIQA 492

Query: 326 D 326
           D
Sbjct: 493 D 493


>gi|224111544|ref|XP_002315895.1| predicted protein [Populus trichocarpa]
 gi|222864935|gb|EEF02066.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 116/405 (28%), Positives = 210/405 (51%), Gaps = 5/405 (1%)

Query: 68  TPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVH 127
           +P LV + +K+L N    AL FF        + +S  S+   I+   +++ +  +W LV 
Sbjct: 4   SPSLVFEALKKLSNAGALALSFFRWAEKQKGFQYSTESYHALIESLGKIKQFNVIWNLVT 63

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
            MK   L   ++TFA+I+ RY  A K   AV  F+ M + G +   +  N +LD LCK +
Sbjct: 64  DMKQKGL-LNKETFALISRRYARARKVKEAVDAFMKMEKFGLKIESSDVNRLLDTLCKSR 122

Query: 188 KVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
           +VE+A  +F K+ +  F AD+ SY ++  GW   K  ++ +EV  EM D G  P++ TY 
Sbjct: 123 QVERAQLVFDKMNKRGFVADIKSYTILLEGWGQEKNLSRLMEVYNEMKDEGFEPDVVTYG 182

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
           I++  + ++ + ++A   F EM+ + C+     Y T+++G G    +  A   F+     
Sbjct: 183 ILINAHCKSRRYDDAIELFHEMEAKNCKPSPHIYCTLINGLGAEKRLSEALEFFELSKAS 242

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G +P   TYNA++   C  + +++     +EM   G  P++ TY++++  L   G+ + A
Sbjct: 243 GFVPEAPTYNAVVGAYCWSERMDDVQRTIDEMRKGGVGPSARTYDIILHHLIRAGKTKIA 302

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
                +M  + C+P+V TY I++R FC+   ++  ++++++M +   LP +  ++ LI+S
Sbjct: 303 YSVFQKMSCEGCQPSVSTYEIIVRMFCNEDRVDMAIKVWDQMKAKGILPVMHMFSTLINS 362

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
           +    K D+   A     EM+D G  P    F+ +   LL  G +
Sbjct: 363 LCHESKLDE---ACMYFQEMLDVGIRPPAQLFSNLKQNLLDEGKK 404



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 120/244 (49%), Gaps = 1/244 (0%)

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186
           + MK     P   T+ I+   +  + + D A+++F  M    C+ S + + T+++ L  E
Sbjct: 167 NEMKDEGFEPDVVTYGILINAHCKSRRYDDAIELFHEMEAKNCKPSPHIYCTLINGLGAE 226

Query: 187 KKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
           K++ +A   F++ +   F  +  +YN +   +C  +R +     + EM   G+ P+  TY
Sbjct: 227 KRLSEALEFFELSKASGFVPEAPTYNAVVGAYCWSERMDDVQRTIDEMRKGGVGPSARTY 286

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           +I+L    RAG+ + A+  F +M    C+  V TY  IV  F     +  A  V+D M  
Sbjct: 287 DIILHHLIRAGKTKIAYSVFQKMSCEGCQPSVSTYEIIVRMFCNEDRVDMAIKVWDQMKA 346

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G+LP +  ++ +I  LC +  ++ A + F+EM+  G  P +  ++ + + L   G+ + 
Sbjct: 347 KGILPVMHMFSTLINSLCHESKLDEACMYFQEMLDVGIRPPAQLFSNLKQNLLDEGKKDT 406

Query: 366 ALEF 369
            + F
Sbjct: 407 VVVF 410


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  208 bits (529), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 110/344 (31%), Positives = 189/344 (54%), Gaps = 6/344 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           +V  M    + P   T+ II +R   AGK D A ++F  M E GC  +  ++N +++ LC
Sbjct: 32  MVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELFHKMIERGCSANTVAYNALINGLC 91

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K++ +E+AY L +    K ++ D I+YN I +G C + + ++A +    M  RG +P++ 
Sbjct: 92  KDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVV 151

Query: 244 TYNIVLKGYFRAGQIEEAWRFF--LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
            YN +L   ++ G++ EAW  F  ++M  RK   D++TY T++ GF  V +   A  +F 
Sbjct: 152 AYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFK 211

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            ++  G +P   TYN+++  L +K +++ A  +F++MV  G  PN  TY++V+ G C  G
Sbjct: 212 DVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVG 271

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
            M R LE    M +    P+V   N +I   C A +++   ++ E+M     +P++ TYN
Sbjct: 272 NMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYN 331

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           IL+  +    K++ +  A +L   MVD G  P   +++ VLNGL
Sbjct: 332 ILLDGLC---KTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGL 372



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 176/340 (51%), Gaps = 6/340 (1%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M      P   T++ I       GK   A+++   M E G    + ++  I+D LC+  K
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60

Query: 189 VEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           V++A  LF K+      A+ ++YN + NG C  +   +A ++L+EM  +G  P+  TYN 
Sbjct: 61  VDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNT 120

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD--GMVN 305
           +L G  R G++ EA +FF  M  R    DVV Y  ++      G++  A  +F    M +
Sbjct: 121 ILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMAD 180

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
             V P + TYN +I   C+ +  + A+ +F++++ KGYMP++ TYN ++ GL     M+ 
Sbjct: 181 RKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDE 240

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           A E   +M D  C PN  TY+I++   C  G + R LEL+E+M      P++   N +I 
Sbjct: 241 AEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVID 300

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            +   KK DD   A K+L EM   G +P   T+N +L+GL
Sbjct: 301 MLCKAKKVDD---AHKVLEEMSKIGAVPDVVTYNILLDGL 337



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 105/346 (30%), Positives = 180/346 (52%), Gaps = 6/346 (1%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           + L+  M S    P   T+  I       GK   A + F SM   G    + ++N +LD 
Sbjct: 100 YKLLEEMASKGYEPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDA 159

Query: 183 LCKEKKVEKAYNLFKVFR---GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
           L KE KV +A+ LFK       K   D+I+YN + +G+C V++T++A+++ K+++ +G  
Sbjct: 160 LYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYM 219

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           P+  TYN +L G  R   ++EA   F +M    C  +  TY+ ++ G   VG + R   +
Sbjct: 220 PDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLEL 279

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
           ++ M      P V   NA+I +LCK   V++A  V EEM   G +P+  TYN+++ GLC 
Sbjct: 280 YEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCK 339

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419
           T  +++A E    M D+ C P++ +Y++++   C   ++     LF++M     +P++ T
Sbjct: 340 TNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVT 399

Query: 420 YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           +NIL+  +    K D+   A  LL  M +   +P   T   +++GL
Sbjct: 400 FNILMDGLCKAGKLDE---AKDLLDVMSEHNVLPDGVTCTTLMHGL 442



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 177/347 (51%), Gaps = 8/347 (2%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
           AR  +      +  +M      P   T++I+   +   G   R ++++  M E      +
Sbjct: 233 ARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDV 292

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA--DVISYNVIANGWCLVKRTNKALEVLK 231
              N ++D+LCK KKV+ A+ + +    K  A  DV++YN++ +G C     +KA E+  
Sbjct: 293 LLCNAVIDMLCKAKKVDDAHKVLEEM-SKIGAVPDVVTYNILLDGLCKTNLVDKAHELFS 351

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
            MVD G  P++ +Y++VL G  +  ++ +A   F  M +RK   DVVT+  ++ G    G
Sbjct: 352 TMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAG 411

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
           ++  A+++ D M    VLP   T   ++  LC+    + A+ +F+ MV KG + +   +N
Sbjct: 412 KLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHN 471

Query: 352 VVIRGLCHTGEMERALEFVGRM--KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
           +V+ GLC  G++ +AL F   M   D E  P+V TY  L+    +AG +++ ++ F++M 
Sbjct: 472 IVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMT 531

Query: 410 SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
              C P+   YN L++ +   +K    + A +L   M ++GF+   F
Sbjct: 532 GSGCAPDYVAYNTLMNGL---RKQGRHIQADRLTQAMKEKGFLSDCF 575



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 83/258 (32%), Positives = 131/258 (50%), Gaps = 5/258 (1%)

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M ++G  P++ TY+ ++ G  + G++ EA     EM ++    DV TYT IV      G+
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           +  A  +F  M+  G   +   YNA+I  LCK +++E A  + EEM  KGY P++ TYN 
Sbjct: 61  VDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNT 120

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE--KMGS 410
           ++ GLC  G++  A +F   M      P+V  YN L+      G++     LF+   M  
Sbjct: 121 ILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMAD 180

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
               P+L TYN LI      +K+D+   A KL  +++ +G+MP   T+N +L GL    N
Sbjct: 181 RKVAPDLITYNTLIDGFCRVEKTDE---AMKLFKDVIAKGYMPDTVTYNSILLGLARKSN 237

Query: 471 QGLAKEILRLQSRCGRLP 488
              A+E+ +     G  P
Sbjct: 238 MDEAEEMFKKMVDSGCAP 255



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 131/269 (48%), Gaps = 3/269 (1%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID+  + +       ++  M  +   P   T+ I+ +        D+A ++F +M ++GC
Sbjct: 299 IDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGC 358

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
              + S++ +L+ LCK  KV  A  LF ++   K   DV+++N++ +G C   + ++A +
Sbjct: 359 APDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKD 418

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           +L  M +  + P+  T   ++ G  R  + +EA R F  M ++    DV+ +  ++ G  
Sbjct: 419 LLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLC 478

Query: 289 VVGEIKRARNVFDGMV--NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
             G++ +A   F  MV  +G   P V TY  ++  L +   V+ A+  F++M G G  P+
Sbjct: 479 REGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPD 538

Query: 347 STTYNVVIRGLCHTGEMERALEFVGRMKD 375
              YN ++ GL   G   +A      MK+
Sbjct: 539 YVAYNTLMNGLRKQGRHIQADRLTQAMKE 567


>gi|242071011|ref|XP_002450782.1| hypothetical protein SORBIDRAFT_05g018050 [Sorghum bicolor]
 gi|241936625|gb|EES09770.1| hypothetical protein SORBIDRAFT_05g018050 [Sorghum bicolor]
          Length = 528

 Score =  207 bits (528), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 141/471 (29%), Positives = 237/471 (50%), Gaps = 29/471 (6%)

Query: 21  GLSPLTTTSPA---PLPPAAADPAA--LASLILTSTDP----RTLTQTLHCPSLHWTPQL 71
            ++P  TTSP+    LPP A  P A  LA ++L   +P     +  Q L    +  T  L
Sbjct: 26  AMAPPETTSPSHVLALPPIARSPDADELARVLLAHHNPFHPAESPLQLLSGGGVSLTGGL 85

Query: 72  VDQIIKRLWNHALKALHFFNILSYHPTYAHS---PSSFDHAIDLAARLRDYRTVWTLVHR 128
           + Q++ RL   +  AL   +    HP++ ++   P ++D  +D  AR R +   W +V  
Sbjct: 86  LVQLLLRLRGASKLALSLLHAARLHPSFVNTRPPPDAYDAVVDALARARQFDAAWRVVVD 145

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS-FNTILDLLCKEK 187
             S     + ++FA++A RYV+AG   +AV+ F  M     R++ ++ F T+LD LCK K
Sbjct: 146 -ASADGAASPRSFAVLARRYVAAGMTRQAVRAFDDMEAFVGREANSAEFATLLDTLCKYK 204

Query: 188 KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
             + A  +F   + K+  +   Y ++  GWC V R + A + LK+M+D G+ PN+ TYNI
Sbjct: 205 YPKVATEIFNKRKYKYNPNEKMYTILIYGWCKVNRNDMARKFLKDMLDHGIEPNIVTYNI 264

Query: 248 VLKGYFRAGQIEEAWRF----------FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
           +L G  R   +   +RF            EM+ R  E DV +Y+ I+H +    + +   
Sbjct: 265 LLNGICRHASLHPDYRFDRTVHSAEDVLKEMRDRGIEPDVTSYSIILHVYSRAHKPELCV 324

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
            +F  M + G+ P+VATY ++I+ L     +E+A  + +EMV +G  P+  TYN   +  
Sbjct: 325 CMFRSMKDRGICPTVATYTSVIKCLASCGRLEDAETLLDEMVAEGVCPSPATYNCFFKEY 384

Query: 358 CHTGEMERALEFVGRMKDDEC--EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
               ++  AL+   +MK       P++ TYNIL+  F          +++  M      P
Sbjct: 385 RGRNDVSGALQLYNKMKQPGSLTAPDIHTYNILLGMFIKLNRHGSVKDIWSDMCESTVGP 444

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
           +LD+Y +LI      +K  +   A +  +EM+++GF+P+K TF  +  GL+
Sbjct: 445 DLDSYTLLIHGFCASQKWRE---ACQFFMEMIEKGFLPQKITFETLYRGLI 492



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 122/307 (39%), Gaps = 49/307 (15%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           Y  V T +   +     P +K + I+   +    + D A K    M +HG   ++ ++N 
Sbjct: 205 YPKVATEIFNKRKYKYNPNEKMYTILIYGWCKVNRNDMARKFLKDMLDHGIEPNIVTYNI 264

Query: 179 ILDLLCK----------EKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKAL 227
           +L+ +C+          ++ V  A ++ K  R +  + DV SY++I + +    +    +
Sbjct: 265 LLNGICRHASLHPDYRFDRTVHSAEDVLKEMRDRGIEPDVTSYSIILHVYSRAHKPELCV 324

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR-------------------FFLEM 268
            + + M DRG+ P + TY  V+K     G++E+A                     FF E 
Sbjct: 325 CMFRSMKDRGICPTVATYTSVIKCLASCGRLEDAETLLDEMVAEGVCPSPATYNCFFKEY 384

Query: 269 KKRK------------------CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
           + R                      D+ TY  ++  F  +      ++++  M    V P
Sbjct: 385 RGRNDVSGALQLYNKMKQPGSLTAPDIHTYNILLGMFIKLNRHGSVKDIWSDMCESTVGP 444

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
            + +Y  +I   C       A   F EM+ KG++P   T+  + RGL    +M R    +
Sbjct: 445 DLDSYTLLIHGFCASQKWREACQFFMEMIEKGFLPQKITFETLYRGLIQ-ADMLRTWRRL 503

Query: 371 GRMKDDE 377
            R  D+E
Sbjct: 504 KRRVDEE 510


>gi|449437410|ref|XP_004136485.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Cucumis sativus]
 gi|449519964|ref|XP_004167004.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Cucumis sativus]
          Length = 534

 Score =  207 bits (528), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 123/404 (30%), Positives = 201/404 (49%), Gaps = 33/404 (8%)

Query: 84  LKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAI 143
           L AL FFN  +    + HSP  ++  IDLA +++ +   W L+  MK+ ++  T  TF++
Sbjct: 129 LPALAFFNWATAGEGFEHSPQPYNEMIDLAGKVKQFGLAWYLIDLMKARNVEITVVTFSM 188

Query: 144 IAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF 203
           +  RYV AG A  AV  F  M ++GC   + +F+ ++ +LCK+++  +A + F   + KF
Sbjct: 189 LVRRYVRAGLAAEAVHAFNRMEDYGCNADIIAFSNVISILCKKRRAVEAQSFFDNLKHKF 248

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
           + DVI Y  + +GWC     ++A  V +EM   G++PN+ TY+IV+    R+GQI  A  
Sbjct: 249 EPDVIVYTSLVHGWCRAGDISEAESVFREMKMAGISPNVYTYSIVIDALCRSGQITRAHD 308

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
            F EM    C  + VT+  ++      G  ++   V++ M        + TYN +I+  C
Sbjct: 309 VFAEMLDAGCNPNSVTFNNLIRVHLRAGRTEKVLQVYNQMKRLRCAADLITYNFLIETHC 368

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
           K D++  AI V   M      PN++++N + R +  + ++  A     RMK+  C+PN  
Sbjct: 369 KDDNLGEAIKVLNSMAKNDCTPNASSFNPIFRCIAKSQDVNGAHRMFARMKEVGCKPNTV 428

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI-----------SSMFVRKK 432
           TYNIL+R F      +   +L ++M      PN +TY  LI           + MF R+ 
Sbjct: 429 TYNILMRMFAVPKSADMIFKLKKEMDEEEVEPNFNTYRELIALYCGMGHWNHAYMFFREM 488

Query: 433 SD----------------DLLVAGK------LLIEMVDRGFMPR 454
            D                +L  AG+      L+ +MV+RGF  R
Sbjct: 489 IDEKCIKPSMPLYKMVLEELRKAGQLKKHEELVDKMVERGFASR 532



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 102/251 (40%), Gaps = 42/251 (16%)

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           G   +   YN ++    +  Q   AW     MK R  EI VVT++ +V  +   G    A
Sbjct: 143 GFEHSPQPYNEMIDLAGKVKQFGLAWYLIDLMKARNVEITVVTFSMLVRRYVRAGLAAEA 202

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
            + F+ M + G    +  ++ +I +LCKK     A   F+ +  K               
Sbjct: 203 VHAFNRMEDYGCNADIIAFSNVISILCKKRRAVEAQSFFDNLKHK--------------- 247

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
                                 EP+V  Y  L+  +C AG+I     +F +M      PN
Sbjct: 248 ---------------------FEPDVIVYTSLVHGWCRAGDISEAESVFREMKMAGISPN 286

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKE 476
           + TY+I+I ++    +S  +  A  +  EM+D G  P   TFN ++   L     G  ++
Sbjct: 287 VYTYSIVIDALC---RSGQITRAHDVFAEMLDAGCNPNSVTFNNLIRVHL---RAGRTEK 340

Query: 477 ILRLQSRCGRL 487
           +L++ ++  RL
Sbjct: 341 VLQVYNQMKRL 351


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 121/387 (31%), Positives = 197/387 (50%), Gaps = 5/387 (1%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           S+F+  I    R    R    ++  M S  L P +KTF  + + Y+  G  D A++I   
Sbjct: 190 STFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQ 249

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK--FKADVISYNVIANGWCLVK 221
           M E GC  S  S N I+   CKE +VE A N  +    +  F  D  ++N + NG C   
Sbjct: 250 MVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAG 309

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
               A+E++  M+  G +P++ TYN V+ G  + G+++EA     +M  R C  + VTY 
Sbjct: 310 HVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYN 369

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
           T++       +++ A  +   + + G+LP V T+N++IQ LC   +   A+ +FEEM  K
Sbjct: 370 TLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSK 429

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
           G  P+  TYN++I  LC  G+++ AL  + +M+   C  +V TYN LI  FC A +    
Sbjct: 430 GCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREA 489

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
            E+F++M       N  TYN LI  +   ++ +D   A +L+ +M+  G  P K+T+N +
Sbjct: 490 EEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVED---AAQLMDQMIMEGQKPDKYTYNSL 546

Query: 462 LNGLLLIGNQGLAKEILRLQSRCGRLP 488
           L      G+   A +I++  +  G  P
Sbjct: 547 LTHFCRGGDIKKAADIVQAMTSNGCEP 573



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 129/434 (29%), Positives = 210/434 (48%), Gaps = 15/434 (3%)

Query: 61  HCPSLHWTP-QLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDY 119
           H  +L  T  +L+D +  +  + A  AL  FN+ S  P ++  P+ ++  +    R   +
Sbjct: 42  HSAALSSTDVKLLDSLRSQPDDSA--ALRLFNLASKKPNFSPEPALYEEILLRLGRSGSF 99

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM-HEHGCRQSLNSFNT 178
             +  ++  MKS        TF I+ E Y      D  + +   M  E G +   + +N 
Sbjct: 100 DDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNR 159

Query: 179 ILDLLCKE---KKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235
           +L+LL      K VE ++    V+    K DV ++NV+    C   +   A+ +L++M  
Sbjct: 160 MLNLLVDGNSLKLVEISHAKMSVW--GIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPS 217

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
            GL P+  T+  V++GY   G ++ A R   +M +  C    V+   IVHGF   G ++ 
Sbjct: 218 YGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVED 277

Query: 296 ARNVFDGMVN-GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
           A N    M N  G  P   T+N ++  LCK   V++AI + + M+ +GY P+  TYN VI
Sbjct: 278 ALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVI 337

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
            GLC  GE++ A+E + +M   +C PN  TYN LI   C   ++E   EL   + S   L
Sbjct: 338 SGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGIL 397

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           P++ T+N LI  + + +      VA +L  EM  +G  P +FT+N +++ L   G    A
Sbjct: 398 PDVCTFNSLIQGLCLTRNHR---VAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEA 454

Query: 475 KEILRLQ--SRCGR 486
             +L+    S C R
Sbjct: 455 LNMLKQMELSGCAR 468



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 103/371 (27%), Positives = 183/371 (49%), Gaps = 8/371 (2%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           AL+F   +S    +     +F+  ++   +    +    ++  M      P   T+  + 
Sbjct: 278 ALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVI 337

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FK 204
                 G+   AV++   M    C  +  ++NT++  LCKE +VE+A  L +V   K   
Sbjct: 338 SGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGIL 397

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
            DV ++N +  G CL +    A+E+ +EM  +G  P+  TYN+++      G+++EA   
Sbjct: 398 PDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNM 457

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
             +M+   C   V+TY T++ GF    + + A  +FD M   GV  +  TYN +I  LCK
Sbjct: 458 LKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCK 517

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
              VE+A  + ++M+ +G  P+  TYN ++   C  G++++A + V  M  + CEP++ T
Sbjct: 518 SRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVT 577

Query: 385 YNILIRYFCDAGEIERGLELFEKMG-SGVCL-PNLDTYNILISSMFVRKKSDDLLVAGKL 442
           Y  LI   C AG +E   +L   +   G+ L P+   YN +I  +F ++K+ +   A  L
Sbjct: 578 YGTLISGLCKAGRVEVASKLLRSIQMKGINLTPH--AYNPVIQGLFRKRKTTE---AINL 632

Query: 443 LIEMVDRGFMP 453
             EM+++   P
Sbjct: 633 FREMLEQNEAP 643



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 135/269 (50%), Gaps = 3/269 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  I      R++R    L   M+S    P + T+ ++ +   S GK D A+ +   M
Sbjct: 402 TFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQM 461

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRT 223
              GC +S+ ++NT++D  CK  K  +A  +F          + ++YN + +G C  +R 
Sbjct: 462 ELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRV 521

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
             A +++ +M+  G  P+  TYN +L  + R G I++A      M    CE D+VTY T+
Sbjct: 522 EDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTL 581

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G    G ++ A  +   +   G+  +   YN +IQ L +K     AI +F EM+ +  
Sbjct: 582 ISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNE 641

Query: 344 MP-NSTTYNVVIRGLCH-TGEMERALEFV 370
            P ++ +Y +V RGLC+  G +  A++F+
Sbjct: 642 APPDAVSYRIVFRGLCNGGGPIREAVDFL 670


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 127/418 (30%), Positives = 213/418 (50%), Gaps = 8/418 (1%)

Query: 68   TPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVH 127
            T  +V ++++ + N    AL FF+  +    Y H   + +  +    RL+  +     V+
Sbjct: 810  TTTVVGKVLQGVRNGD-AALGFFDWATSQEGYNHDTYTCNCLLQALLRLKRPKDALQ-VY 867

Query: 128  RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
            R K L   P   TF I+      AG    A ++   M  HG  Q++   N ++  LC  +
Sbjct: 868  RNK-LCCSPNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSAR 926

Query: 188  KVEKAYNLFKVFR--GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
            K++ A  LFK     G    DV +Y+ I +      + + A  ++++MV +G +PN+ TY
Sbjct: 927  KLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTY 986

Query: 246  NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
            + +L G  +AG+++EA      M +  C  ++VTY TI+ G   +G I  A ++ + MV+
Sbjct: 987  SSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVD 1046

Query: 306  GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            GG  P+V TY  ++   CK    E+AI + E MV KGY+PN  TYN ++   C   E+ER
Sbjct: 1047 GGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVER 1106

Query: 366  ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
            A + +  M    C PNV +YN +I   C A ++  G+ L E+M S  C+P++ T+N +I 
Sbjct: 1107 ACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIID 1166

Query: 426  SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
            +M    + D   +A +L   + + G  P   T+N +++GL        A+ +LR  +R
Sbjct: 1167 AMCKTYRVD---IAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTR 1221



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 186/385 (48%), Gaps = 4/385 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S+   I+   +L        ++ +M      P   T+  + + +   G  D AV++   M
Sbjct: 302 SYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKM 361

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRT 223
            E G R +  ++N I+ + C+   +E+A+ + ++  +     D I+Y+ I +G+C   + 
Sbjct: 362 TERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKL 421

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A ++L++M+ RG  P++   + ++    +A  I+ A           C  DVV Y+ +
Sbjct: 422 REAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSIL 481

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +H       +  A +  D MV     P V TYN+++  LCK   + +A L+F+ M   G 
Sbjct: 482 IHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGV 541

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
           MP+  TY++VI   C    ++ A + + RMK+ +C P+V TY+ LI   C AG +++  +
Sbjct: 542 MPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFD 601

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           +F++M    C PNL TYN LI  +    K +    A ++L  M  +   P   T+  ++N
Sbjct: 602 VFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQ---AAEMLEIMRKQSCTPDSITYTCLIN 658

Query: 464 GLLLIGNQGLAKEILRLQSRCGRLP 488
           GL        A  +LR     G LP
Sbjct: 659 GLCNASRLEEAWRVLREMKDKGCLP 683



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 104/387 (26%), Positives = 185/387 (47%), Gaps = 1/387 (0%)

Query: 41  AALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYA 100
           + L  ++  ++D + L   L       +P++V ++++RL +    AL FF        Y 
Sbjct: 65  SVLERIVQGASDEQALRVALDEYRGQLSPEIVGKVLQRLIDPG-AALVFFEWAETRDGYQ 123

Query: 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           H     +  +++  +   Y     L         G    T++ +   ++ AGK   A ++
Sbjct: 124 HEIFCCNCLLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYSTLISGFIRAGKILPAYEL 183

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV 220
           F  M+  G +       +IL  LC   +   A   F+        D ++YN + NG    
Sbjct: 184 FDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKS 243

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
            R + A+ +L+EMVD G  PN+ +YN VL G+ +A ++E A     +M  R C  DVV+Y
Sbjct: 244 DRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSY 303

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
           TT+++G   + ++  A  V D M+  G  P+V TY  ++   C+   ++ A+ +  +M  
Sbjct: 304 TTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTE 363

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           +GY PN+ TYN ++   C   +MERA + +  M    C P+   Y+ +I  FC AG++  
Sbjct: 364 RGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLRE 423

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSM 427
             +L E+M    C P++   + LI ++
Sbjct: 424 AHDLLEQMIRRGCRPDVACLSTLIDAL 450



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 190/366 (51%), Gaps = 5/366 (1%)

Query: 125  LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
            LV  M S    P   T++ +      AGK D A  +   M   GC  ++ ++NTI+D  C
Sbjct: 970  LVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHC 1029

Query: 185  KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            K  ++++AY+L + +  G  + +V++Y V+ + +C   +   A+ +++ MV++G  PNL 
Sbjct: 1030 KLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLF 1089

Query: 244  TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            TYN +L  + +  ++E A +    M ++ C  +VV+Y T++ G     ++     + + M
Sbjct: 1090 TYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQM 1149

Query: 304  VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            ++   +P + T+N +I  +CK   V+ A  +F  +   G  PN  TYN ++ GLC +   
Sbjct: 1150 LSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRF 1209

Query: 364  ERALEFVGRM-KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
            ++A   +  M +   C P++ TYN +I   C +  ++R  +LF +M S    P+  TY+I
Sbjct: 1210 DQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSI 1269

Query: 423  LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
            +ISS+   +  D+   A  +L  M+  GF P   T+  +++G    GN   A EIL+L  
Sbjct: 1270 VISSLCKWRFMDE---ANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLL 1326

Query: 483  RCGRLP 488
              G  P
Sbjct: 1327 SKGSYP 1332



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 104/349 (29%), Positives = 175/349 (50%), Gaps = 4/349 (1%)

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           Y  +  ++++ + +  R  D      ++  M      P    ++ I   +  AGK   A 
Sbjct: 366 YRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAH 425

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGW 217
            +   M   GCR  +   +T++D LCK   ++ A  L ++  G   A DV++Y+++ +  
Sbjct: 426 DLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHAL 485

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           C  KR  +A   L  MV     P++ TYN V+ G  ++ +I +A+  F  M+      DV
Sbjct: 486 CKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDV 545

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           VTY+ ++H F     +  A  + + M     +P V TY+A+I  LCK  +V+ A  VF+E
Sbjct: 546 VTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQE 605

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M+G G  PN  TYN +I GLC   ++E+A E +  M+   C P+  TY  LI   C+A  
Sbjct: 606 MLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASR 665

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
           +E    +  +M    CLP+  TY  L+ ++   +K+++L +  +LL EM
Sbjct: 666 LEEAWRVLREMKDKGCLPDRMTYGTLLRAL---QKTNNLELVEQLLKEM 711



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 186/398 (46%), Gaps = 41/398 (10%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           R  S +  P   T+  +      + + D A+++   M ++G   ++ S+NT+L   CK  
Sbjct: 220 REMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKAN 279

Query: 188 KVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
           +VE A  L +  V RG    DV+SY  + NG C + + ++A  V+ +M+ RG  PN+ TY
Sbjct: 280 RVENALWLLEQMVTRG-CPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITY 338

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKR---------------------------------- 271
             ++ G+ R G ++ A     +M +R                                  
Sbjct: 339 GTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQ 398

Query: 272 -KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
             C  D + Y+TI+ GF   G+++ A ++ + M+  G  P VA  + +I  LCK  ++++
Sbjct: 399 TGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDS 458

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           A  +    +G    P+   Y+++I  LC    +  A  ++  M  + C P+V TYN ++ 
Sbjct: 459 AQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVD 518

Query: 391 YFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450
             C +  I     LF++M +   +P++ TY+I+I S     K ++L  A K+L  M +  
Sbjct: 519 GLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFC---KDNNLDSAFKMLERMKEAK 575

Query: 451 FMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            +P   T++ ++NGL   G    A ++ +    CG  P
Sbjct: 576 CVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAP 613



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 186/383 (48%), Gaps = 4/383 (1%)

Query: 105  SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
            +++  +D+  +  +      L+  M      P   ++  +      A K    V +   M
Sbjct: 1090 TYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQM 1149

Query: 165  HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRT 223
              + C   + +FNTI+D +CK  +V+ AY LF + +      ++++YN + +G C  +R 
Sbjct: 1150 LSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRF 1209

Query: 224  NKALEVLKEMV-DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
            ++A  +L+EM   +G +P++ TYN V+ G  ++ +++ A++ FL+M       D VTY+ 
Sbjct: 1210 DQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSI 1269

Query: 283  IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
            ++        +  A NV + M+  G  P   TY  +I   CK  +++ A+ + + ++ KG
Sbjct: 1270 VISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKG 1329

Query: 343  YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
              P+  T+++ I  L   G + +A E +  M      P+  TYN L++ FCDA   E  +
Sbjct: 1330 SYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAV 1389

Query: 403  ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
            +LFE M    C P+  TY  L+  +  +K   DLL   ++   MVD GF       +++ 
Sbjct: 1390 DLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLL--AEVSKSMVDTGFKLNHELSSKLE 1447

Query: 463  NGLLLIGNQGLAKEILRLQSRCG 485
              + +  +  L   I+ +  +CG
Sbjct: 1448 ASIEVEADVRLGCAIVDMFGKCG 1470



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 128/269 (47%), Gaps = 1/269 (0%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID   +     +   L+     +   P    ++I+      A +   A      M ++ C
Sbjct: 447 IDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRC 506

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALE 228
              + ++N+++D LCK +++  A+ LF   R      DV++Y+++ + +C     + A +
Sbjct: 507 YPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFK 566

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           +L+ M +    P++ TY+ ++ G  +AG +++A+  F EM    C  ++VTY T++ G  
Sbjct: 567 MLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLC 626

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
            + ++++A  + + M      P   TY  +I  LC    +E A  V  EM  KG +P+  
Sbjct: 627 KINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRM 686

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           TY  ++R L  T  +E   + +  M+  E
Sbjct: 687 TYGTLLRALQKTNNLELVEQLLKEMEATE 715



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 97/409 (23%), Positives = 169/409 (41%), Gaps = 34/409 (8%)

Query: 105  SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
            +++  ID   ++        ++  M+  S  P   T+  +     +A + + A ++   M
Sbjct: 617  TYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREM 676

Query: 165  HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK----------------VFRGKFKADVI 208
             + GC     ++ T+L  L K   +E    L K                + R   + DV+
Sbjct: 677  KDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEMEATEEGQWNANGARLHRFVIRGDVL 736

Query: 209  SYNVIANGWCLVKRTNKALEVLKEMVDRG-LNPNLTTYNIV---LKGYFRAGQIE-EAWR 263
               +      L  +T     VL     +G  +P    Y +     +G F    +     R
Sbjct: 737  MMAMAVPMAALTSQT----RVLDSKDQQGQFSPRPHQYRVTAVATQGGFHHKIVRILNSR 792

Query: 264  FFLEMKKRKCEIDVVTYTTIVHGFGVVG--EIKRARNVFD-GMVNGGVLPSVATYNAMIQ 320
            F  E  +   E      TT V G  + G      A   FD      G      T N ++Q
Sbjct: 793  FAWEYAETALERFTGKLTTTVVGKVLQGVRNGDAALGFFDWATSQEGYNHDTYTCNCLLQ 852

Query: 321  VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
             L +    ++A+ V+   +     PN  T+ ++I GLC  G++  A E +  M       
Sbjct: 853  ALLRLKRPKDALQVYRNKLCCS--PNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQ 910

Query: 381  NVQTYNILIRYFCDAGEIERGLELFEKMG-SGVCLPNLDTYNILISSMFVRKKSDDLLVA 439
            NV  +N++I+  C A +++  LELF++M  SG C P++ TY+ ++ S+    K DD   A
Sbjct: 911  NVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDD---A 967

Query: 440  GKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             +L+ +MV +G  P   T++ +L+GL   G    A  +L+  +R G  P
Sbjct: 968  CRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSP 1016



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 93/412 (22%), Positives = 163/412 (39%), Gaps = 97/412 (23%)

Query: 105  SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
            +++  ID   + +     + L  +M S  L P   T++I+          D A  +   M
Sbjct: 1231 TYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELM 1290

Query: 165  HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFK-ADVISYNVIANGWCLVKRT 223
             ++G      ++ T++D  CK   ++KA  + ++   K    DV+++++  +      R 
Sbjct: 1291 LKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRL 1350

Query: 224  NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT- 282
             +A E+L+ M+  GL P+  TYN +LKG+  A   E+A   F  M++  CE D  TYTT 
Sbjct: 1351 RQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTL 1410

Query: 283  ---------------------------------------------------IVHGFGVVG 291
                                                               IV  FG  G
Sbjct: 1411 VGHLVDKKSYKDLLAEVSKSMVDTGFKLNHELSSKLEASIEVEADVRLGCAIVDMFGKCG 1470

Query: 292  EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
              + AR VF+GM       +V  ++AM+ V       E A  ++  M  +G  P++ T+ 
Sbjct: 1471 SPQDARKVFEGMDQ----RNVVLWSAMLGVYVFHKQEEQAFGLWRVMGLEGVEPDAVTFL 1526

Query: 352  VVIRGLCHTGEMERAL-EFVGRMKD-----------------------DE---------C 378
             ++   CH G ++ A+ EFV   +D                       +E         C
Sbjct: 1527 SLLTMCCHAGLLDAAVDEFVSISRDYGLEPGVDHFSCVIDLLGRLGLVNEAEDLMLGMPC 1586

Query: 379  EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
            +P+  T+N L+  +   G+ ER L + E        P   +Y +L+S+M+ +
Sbjct: 1587 KPSAATWNCLLSAYKICGDFERALRVAELN------PTQASY-LLLSNMYAQ 1631


>gi|224085950|ref|XP_002307751.1| predicted protein [Populus trichocarpa]
 gi|222857200|gb|EEE94747.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 135/465 (29%), Positives = 222/465 (47%), Gaps = 46/465 (9%)

Query: 28  TSPAPLPPAAADPAALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKR--LWNHAL- 84
           ++P   PP   DP    S +  S D   +  T+   S    P +V  +I +     H + 
Sbjct: 22  SNPRKTPPP--DPTYTISSL--SLDFSQIISTVRSIS----PSIVRHVIAQSSAVRHGIP 73

Query: 85  --KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
             + L FFN  S    +  SP +++  +D + ++  +   W  +  MK+ ++  T +TF 
Sbjct: 74  VPQVLAFFNWASNQDGFRKSPEAYNEMVDFSGQVMMFDVAWYFIDLMKARNVDVTVETFL 133

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK 202
           I+  RYV AG A  A+  F  M ++ C+    +F+ ++ +LC+E++  +A   F   + K
Sbjct: 134 ILMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILCRERRASQAQEFFDSLKDK 193

Query: 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262
           F+ DVI Y  +  GWC     ++A  V  EM   G+ PN+ TY+IV+    R GQI  A 
Sbjct: 194 FEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAH 253

Query: 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322
             F EM    C+ + +TY +++      G  ++   V++ M   G  P   TYN +I+  
Sbjct: 254 DIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFLIETH 313

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
           CK +++E+AI V   M  KG  PN++T+N +   +   G++  A     +MK+  CE N 
Sbjct: 314 CKDENLEDAIKVIGLMAKKGCAPNASTFNTLFGCIAKLGDVNAAHRMYKKMKELNCEANT 373

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM-----------FVRK 431
            TYN L++ F  +   +  L+L  +M      PN++TY +LI+             F R+
Sbjct: 374 VTYNTLMKMFVASKSTDMVLKLKTEMDENKIEPNVNTYKVLITMYCGMGHWNNAYKFFRE 433

Query: 432 KSDD----------------LLVAGKL-----LIE-MVDRGFMPR 454
             D+                L  AG+L     L+E MVDRGF+ R
Sbjct: 434 MIDEKCLRPSLPVYDMVLQQLRKAGQLKKHEELVEKMVDRGFVTR 478



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 93/208 (44%), Gaps = 7/208 (3%)

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y  +V   G V     A    D M    V  +V T+  +++   +      AI  F  M 
Sbjct: 97  YNEMVDFSGQVMMFDVAWYFIDLMKARNVDVTVETFLILMRRYVRAGLAAEAIHAFNRME 156

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
                P+   ++++I  LC      +A EF   +KD + EP+V  Y  L+R +C AG I 
Sbjct: 157 DYNCKPDKIAFSILISILCRERRASQAQEFFDSLKD-KFEPDVIVYTNLVRGWCRAGNIS 215

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
               +F +M      PN+ TY+I+I S+    +   +  A  +  EM+D G  P   T+N
Sbjct: 216 EAERVFGEMKVAGIKPNVYTYSIVIDSLC---RCGQITRAHDIFAEMLDAGCQPNSITYN 272

Query: 460 RVLNGLLLIGNQGLAKEILRLQSRCGRL 487
            ++    +    G  +++L++ ++  RL
Sbjct: 273 SLMR---IHVKAGRTEKVLQVYNQMKRL 297


>gi|225459754|ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Vitis vinifera]
          Length = 531

 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 108/342 (31%), Positives = 181/342 (52%), Gaps = 1/342 (0%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII 144
           + L FFN  +    + HSP  +   IDLA ++R +   W L+  MK+ ++    +TF I+
Sbjct: 128 QTLAFFNWATNLEEFGHSPEPYMEMIDLAGKVRQFDLAWQLIDLMKTRNVEIPVETFTIL 187

Query: 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFK 204
             RYV AG A  AV  F  M ++GC+    +F+ ++  L K+++  +A + F   + +F+
Sbjct: 188 VRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFE 247

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
            DV+ Y  + +GWC     ++A  V  EM   G+ PN+ TY+IV+    R+GQI  A   
Sbjct: 248 PDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDV 307

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
           F EM    C+ + +T+  ++      G  ++   V++ M   G  P   TYN +I+  C+
Sbjct: 308 FSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCR 367

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
            D++E A+ +    V KG   N++++N +   +   G++  A     +MKD +C PN  T
Sbjct: 368 DDNLEEAVKILNS-VKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVT 426

Query: 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
           YNIL+R F D    +  L+L ++M      PN +TY +LIS+
Sbjct: 427 YNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLIST 468



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 104/241 (43%), Gaps = 1/241 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   ID   R         +   M  +   P   TF  +   +V AG+ ++ ++++  M
Sbjct: 287 TYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQM 346

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTN 224
              GC     ++N +++  C++  +E+A  +    +     +  S+N I      +   N
Sbjct: 347 KRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVKKGCNLNASSFNPIFGCISKLGDVN 406

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
            A  +  +M D    PN  TYNI+++ +      +   +   EM + + E +  TY  ++
Sbjct: 407 SAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLI 466

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVL-PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
             F  +G    A + F  M+    L PS+  Y  ++Q L K   ++    + E+MV +G+
Sbjct: 467 STFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVEKMVNRGF 526

Query: 344 M 344
           +
Sbjct: 527 V 527



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 91/208 (43%), Gaps = 7/208 (3%)

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y  ++   G V +   A  + D M    V   V T+  +++   K      A+  F  M 
Sbjct: 149 YMEMIDLAGKVRQFDLAWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVHAFNRME 208

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             G  P+   ++VVI  L        A  F   +KD   EP+V  Y  L+  +C AG I 
Sbjct: 209 DYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKD-RFEPDVVVYTSLVHGWCRAGNIS 267

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
               +F +M      PN+ TY+I+I ++    +S  +  A  +  EM+D G  P   TFN
Sbjct: 268 EAERVFGEMKMAGIQPNVYTYSIVIDALC---RSGQITRAHDVFSEMIDVGCDPNAITFN 324

Query: 460 RVLNGLLLIGNQGLAKEILRLQSRCGRL 487
              N + +    G  +++L++ ++  RL
Sbjct: 325 ---NLMRVHVKAGRTEKVLQVYNQMKRL 349



 Score = 43.1 bits (100), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 4/130 (3%)

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
           + + A + +  MK    E  V+T+ IL+R +  AG     +  F +M    C P+   ++
Sbjct: 161 QFDLAWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFS 220

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481
           ++ISS+  ++++   + A      + DR F P    +  +++G    GN   A+ +    
Sbjct: 221 VVISSLSKKRRA---IEAQSFFDSLKDR-FEPDVVVYTSLVHGWCRAGNISEAERVFGEM 276

Query: 482 SRCGRLPRQF 491
              G  P  +
Sbjct: 277 KMAGIQPNVY 286



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/137 (20%), Positives = 57/137 (41%), Gaps = 2/137 (1%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           SSF+      ++L D  +   +  +MK L   P   T+ I+   +      D  +K+   
Sbjct: 390 SSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKE 449

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVK 221
           M E+    + N++  ++   C       AY+ FK  +     +  +  Y ++        
Sbjct: 450 MDENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAG 509

Query: 222 RTNKALEVLKEMVDRGL 238
           +  K  E++++MV+RG 
Sbjct: 510 QLKKHEELVEKMVNRGF 526


>gi|357128238|ref|XP_003565781.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Brachypodium distachyon]
          Length = 547

 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 115/434 (26%), Positives = 222/434 (51%), Gaps = 7/434 (1%)

Query: 46  LILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSS 105
           ++ +  +PR +   L    ++ +P+LV ++++ L N  + AL FF        + ++  S
Sbjct: 105 VVSSQPEPR-IASALDALGVNMSPELVAEVLRNLSNAGILALAFFRWAERQQGFRYTAES 163

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           F + I+   +++ +R VW+LV  M+   L  ++ TF +I  RY  A K   AV+ F  M 
Sbjct: 164 FHNLIEALGKIKQFRLVWSLVEAMRCRGL-LSKDTFRLIVRRYARARKVKEAVETFEKMS 222

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR--GKFKADVISYNVIANGWCLVKRT 223
             G +  L+ +N ++D+L K K+V+KA+ +FK  +  G+F  D+ +Y V+  GW   K  
Sbjct: 223 SFGLKADLSDYNWLIDVLSKSKQVKKAHAIFKEMKRNGRFVPDLKTYTVLMEGWGHEKDL 282

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
                V +EM+D G+ P++  Y  ++  + ++G+ +EA + F EM+   C      Y  +
Sbjct: 283 LMLKSVYQEMLDAGIKPDVVAYGTLISSFCKSGKCDEAIKVFREMEANGCMPSPHVYCML 342

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++G G    +  A   F+     G    V T NA++   C+    ++A  + +EM   G 
Sbjct: 343 INGLGSEERLDEALKYFELSKASGFPMEVPTCNAVVGAYCRSSKFQHAFKMVDEMRKTGI 402

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN+ TY+++++ L  + ++E A     RM  + CEP + TY +++  FC    ++  L+
Sbjct: 403 GPNARTYDIILQYLIKSQKIEEAYNVFQRMGMEGCEPQLNTYTMMVGMFCSNERVDMALK 462

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           ++++M     LP +  ++ LI+ +    + ++  V      EM+D+G  P    F+ +  
Sbjct: 463 VWKQMKEKGVLPCMHMFSSLINGLCFENRLEEACV---YFQEMLDKGIRPPGQLFSNLKE 519

Query: 464 GLLLIGNQGLAKEI 477
            L+  G   LA+++
Sbjct: 520 ALIEGGRISLAQDM 533



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 37/179 (20%), Positives = 82/179 (45%), Gaps = 5/179 (2%)

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           +  +++ +I+ L K         + E M  +G + +  T+ +++R      +++ A+E  
Sbjct: 160 TAESFHNLIEALGKIKQFRLVWSLVEAMRCRGLL-SKDTFRLIVRRYARARKVKEAVETF 218

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG-SGVCLPNLDTYNILISSMFV 429
            +M     + ++  YN LI     + ++++   +F++M  +G  +P+L TY +L+     
Sbjct: 219 EKMSSFGLKADLSDYNWLIDVLSKSKQVKKAHAIFKEMKRNGRFVPDLKTYTVLMEGWGH 278

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            K   DLL+   +  EM+D G  P    +  +++     G    A ++ R     G +P
Sbjct: 279 EK---DLLMLKSVYQEMLDAGIKPDVVAYGTLISSFCKSGKCDEAIKVFREMEANGCMP 334


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 115/362 (31%), Positives = 192/362 (53%), Gaps = 7/362 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           LV    S    P   T++I+A+     G+ D A ++   M   GC  +L ++NT++D LC
Sbjct: 353 LVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLC 412

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  K EKAY L + +    F  DV++Y +I +G C   R +KAL++++ M+ RG  P++ 
Sbjct: 413 KASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVI 472

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY  +++G  R G+++EA   F EM  + C  D + Y ++V+G+      K A+ V DG+
Sbjct: 473 TYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGI 532

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
                 P +  YNA++   CK+  ++    VFE+M  +G +PN  TYN+V+ GLC  G++
Sbjct: 533 RG---TPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKV 589

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A  F+  M    C P+V +YNI+I     A + +   ++ ++M      P+  TYN L
Sbjct: 590 DEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTL 649

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           ++     ++ DD   A  +L  M+  G  P   T+N +++GL      G A E++    R
Sbjct: 650 MAQFCKEERFDD---AVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLR 706

Query: 484 CG 485
            G
Sbjct: 707 NG 708



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/413 (28%), Positives = 200/413 (48%), Gaps = 12/413 (2%)

Query: 69  PQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRT--VWTLV 126
           P +V ++++RL +    A+ FF + +    + HS  +F     L   L +  +  +  + 
Sbjct: 93  PAVVSRVLQRLKDPQ-TAIVFF-VWAGDRGFKHS--TFTRNCFLQTLLENGSSDRIPAMF 148

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186
            RM      P   T+ ++ +      + D+A  +       G +  ++ +  +    CK 
Sbjct: 149 ERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKT 208

Query: 187 KKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
            +++ A    ++FR     D I+YN I +G C     + ALE LKEM +R + P++ TYN
Sbjct: 209 GRLKDA---LEIFRNIPSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYN 265

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
           I++ G  +A + ++A     EM  R    D VT+ +I+ G    G+ +RA ++   M   
Sbjct: 266 ILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAER 325

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
              PS  TYN +I  LCK+ +V+ A  + +E V  G++P+  TY+++  GLC  G ++ A
Sbjct: 326 NCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEA 385

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
            E V  M    C PN+ TYN LI   C A + E+  EL E + S   +P++ TY I++  
Sbjct: 386 FELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDG 445

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           +    + D  L   K++  M+ RG  P   T+  ++ GL   G    A  I +
Sbjct: 446 LCKEGRLDKAL---KMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFK 495



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 177/367 (48%), Gaps = 8/367 (2%)

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           YA    ++   I    ++      +T++ + K     P    + I+   +   G+   A+
Sbjct: 156 YAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDAL 215

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGW 217
           +IF ++          ++N I+   C++   + A    K     K   DV +YN++ +G 
Sbjct: 216 EIFRNIPS----PDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGL 271

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           C   +T+KA E+L EMVDRG+ P+  T+N ++ G  +AG+ E A      M +R C    
Sbjct: 272 CKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSC 331

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
            TY T++ G      + RA+++ D  V+ G +P V TY+ +   LCK+  ++ A  + +E
Sbjct: 332 CTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKE 391

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M GKG  PN  TYN +I GLC   + E+A E +  +      P+V TY I++   C  G 
Sbjct: 392 MSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGR 451

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           +++ L++ E M    C P++ TY  L+  +    + D+   A  +  EMV +        
Sbjct: 452 LDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDE---AHHIFKEMVSKDCTADALA 508

Query: 458 FNRVLNG 464
           +  ++NG
Sbjct: 509 YVSLVNG 515



 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 188/407 (46%), Gaps = 36/407 (8%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           R  D       +  M    + P   T+ I+ +    A K D+A ++   M + G      
Sbjct: 238 RKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTV 297

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           +FN+I+D LCK  K E+A++L  V   +  +    +YN + +G C  +  ++A +++ E 
Sbjct: 298 TFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEF 357

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           V  G  P++ TY+I+  G  + G+I+EA+    EM  + C  ++VTY T++ G     + 
Sbjct: 358 VSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKT 417

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           ++A  + + +V+ G +P V TY  ++  LCK+  ++ A+ + E M+ +G  P+  TY  +
Sbjct: 418 EKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTAL 477

Query: 354 IRGLCHTGEMERALEFVGRMKDDEC--------------------------------EPN 381
           + GLC TG ++ A      M   +C                                 P 
Sbjct: 478 MEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPY 537

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
           +  YN L+  +C  G ++    +FE M    C+PN+ TYNI++  +    K D+   A  
Sbjct: 538 IDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDE---AFP 594

Query: 442 LLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            L  M   G +P   ++N +++GL        A+++L    + G  P
Sbjct: 595 FLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPP 641



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 116/419 (27%), Positives = 199/419 (47%), Gaps = 46/419 (10%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   +       + L+  + S    P   T+ II +     G+ D+A+K+   M
Sbjct: 403 TYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGM 462

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
            + GC  S+ ++  +++ LC+  +V++A+++FK    K   AD ++Y  + NG+C   RT
Sbjct: 463 LKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRT 522

Query: 224 NKALEVL--------------------------------KEMVDRGLNPNLTTYNIVLKG 251
            +A +V+                                ++M  RG  PN+ TYNIV+ G
Sbjct: 523 KEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDG 582

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
             + G+++EA+ F   M    C  DVV+Y  I+ G     + K AR V D M+  G+ P 
Sbjct: 583 LCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPD 642

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
             TYN ++   CK++  ++A+ + + M+  G  P++ TYN +I GL  T  +  A E + 
Sbjct: 643 AVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMH 702

Query: 372 RMKDDECEPNV-QTYNILIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISSMFV 429
            M  + C  +   TYN +I   C  G +++ L L + M G GV   N  TYNI I  +  
Sbjct: 703 EMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGV-EANTVTYNIFIDRLCK 761

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL----LIGNQGLAKEILRLQSRC 484
             + D+   A  LL EM     +  + ++  V+ GL     L     LA+E++ ++  C
Sbjct: 762 EGRLDE---ASSLLSEM---DTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLC 814



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 172/380 (45%), Gaps = 41/380 (10%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P    +  + + Y   G+ D    +F  M   GC  ++ ++N ++D LCK  KV++A+  
Sbjct: 536 PYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPF 595

Query: 196 FK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            + +       DV+SYN+I +G     +  +A +VL +M+  G+ P+  TYN ++  + +
Sbjct: 596 LESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCK 655

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV-NGGVLPSVA 313
             + ++A      M K   + D VTY T++ G      +  A  +   M+ NG V+ +  
Sbjct: 656 EERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACT 715

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           TYN +I  LCK+  ++ A+L+ + M G G   N+ TYN+ I  LC  G ++ A   +  M
Sbjct: 716 TYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEM 775

Query: 374 KD--DE----------CEP---------------------NVQTYNILIRYFCDAGEIER 400
               DE          C+                         T+N+LI  F     ++ 
Sbjct: 776 DTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDE 835

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
            L L   M    C P++ TYN++I+ +    K D    A +L  EM  RG +    ++  
Sbjct: 836 ALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDK---AWELFDEMAVRGIVASSVSYTV 892

Query: 461 VLNGLLLIGNQGLAKEILRL 480
           ++ GL     QG  KE L++
Sbjct: 893 LIYGLC---GQGRGKEALQV 909



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 134/291 (46%), Gaps = 34/291 (11%)

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           + + M+D G  P+  TY++V+K   +  QI++A+    + K R  + +V  YT +   F 
Sbjct: 147 MFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFC 206

Query: 289 VVGEIKRARNVF------------------------DG-------MVNGGVLPSVATYNA 317
             G +K A  +F                        DG       M    V P V TYN 
Sbjct: 207 KTGRLKDALEIFRNIPSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNI 266

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           +I  LCK    + A  +  EMV +G  P++ T+N ++ GLC  G+ ERA   +  M +  
Sbjct: 267 LIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERN 326

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
           C P+  TYN LI   C    ++R  +L ++  S   +P++ TY+IL   +  R + D+  
Sbjct: 327 CRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDE-- 384

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            A +L+ EM  +G  P   T+N +++GL        A E+L      G +P
Sbjct: 385 -AFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVP 434



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 124/259 (47%), Gaps = 8/259 (3%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS-LNSFNTILDLL 183
           ++  M    + P   T+  +        +   A ++   M  +GC  S   ++NTI+D L
Sbjct: 665 ILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRL 724

Query: 184 CKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CKE  +++A  L     G   +A+ ++YN+  +  C   R ++A  +L EM       + 
Sbjct: 725 CKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEM---DTLRDE 781

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRK--CEIDVVTYTTIVHGFGVVGEIKRARNVF 300
            +Y  V+ G  +A Q++ A +   EM   K  C I   T+  ++  F     +  A  + 
Sbjct: 782 VSYTTVIIGLCKAEQLDRASKLAREMVAVKGLC-ITSHTFNLLIDAFTKTKRLDEALTLL 840

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
             MV  G  PSV TYN +I  LCK D V+ A  +F+EM  +G + +S +Y V+I GLC  
Sbjct: 841 GLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQ 900

Query: 361 GEMERALEFVGRMKDDECE 379
           G  + AL+ +  M   +CE
Sbjct: 901 GRGKEALQVLEEMASSDCE 919



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 7/193 (3%)

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           G   R   +F+ M++ G  P   TY+ +I+ LC+ + ++ A  + ++   +G+ P  + Y
Sbjct: 139 GSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVY 198

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
            ++ R  C TG ++ ALE    +      P+   YN +I   C   + +  LE  ++M  
Sbjct: 199 TILTRAFCKTGRLKDALEIFRNIP----SPDAIAYNAIIHGHCRKNDCDGALEFLKEMNE 254

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
               P++ TYNILI  +    K+D    A ++L EMVDRG  P   TFN +++GL   G 
Sbjct: 255 RKVAPDVFTYNILIDGLCKASKTDK---ASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 311

Query: 471 QGLAKEILRLQSR 483
              A  +L + + 
Sbjct: 312 FERAHSLLAVMAE 324



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 101/217 (46%), Gaps = 10/217 (4%)

Query: 73  DQIIKRLWNHAL--KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMK 130
           + II RL       +AL   + ++ H   A++  +++  ID   +        +L+  M 
Sbjct: 718 NTIIDRLCKEGCLKQALLLMDHMTGHGVEANT-VTYNIFIDRLCKEGRLDEASSLLSEMD 776

Query: 131 SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE-HGCRQSLNSFNTILDLLCKEKKV 189
           +L     + ++  +      A + DRA K+   M    G   + ++FN ++D   K K++
Sbjct: 777 TLR---DEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRL 833

Query: 190 EKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           ++A  L    V RG     VI+YN++    C + + +KA E+  EM  RG+  +  +Y +
Sbjct: 834 DEALTLLGLMVQRG-CSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTV 892

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           ++ G    G+ +EA +   EM    CEID + +  + 
Sbjct: 893 LIYGLCGQGRGKEALQVLEEMASSDCEIDDLKWEDVA 929


>gi|147767652|emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]
          Length = 1563

 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 108/342 (31%), Positives = 181/342 (52%), Gaps = 1/342 (0%)

Query: 85   KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII 144
            + L FFN  +    + HSP  +   IDLA ++R +   W L+  MK+ ++    +TF I+
Sbjct: 1160 QTLAFFNWATNLEEFGHSPEPYMEMIDLAGKVRQFDLAWQLIDLMKTRNVEIPVETFTIL 1219

Query: 145  AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFK 204
              RYV AG A  AV  F  M ++GC+    +F+ ++  L K+++  +A + F   + +F+
Sbjct: 1220 VRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFE 1279

Query: 205  ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
             DV+ Y  + +GWC     ++A  V  EM   G+ PN+ TY+IV+    R+GQI  A   
Sbjct: 1280 PDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIXPNVYTYSIVIDALCRSGQITRAHDV 1339

Query: 265  FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
            F EM    C+ + +T+  ++      G  ++   V++ M   G  P   TYN +I+  C+
Sbjct: 1340 FSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCR 1399

Query: 325  KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
             D++E A+ +    V KG   N++++N +   +   G++  A     +MKD +C PN  T
Sbjct: 1400 DDNLEEAVKILNS-VKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVT 1458

Query: 385  YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
            YNIL+R F D    +  L+L ++M      PN +TY +LIS+
Sbjct: 1459 YNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLIST 1500



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 104/241 (43%), Gaps = 1/241 (0%)

Query: 105  SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
            ++   ID   R         +   M  +   P   TF  +   +V AG+ ++ ++++  M
Sbjct: 1319 TYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQM 1378

Query: 165  HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTN 224
               GC     ++N +++  C++  +E+A  +    +     +  S+N I      +   N
Sbjct: 1379 KRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVKKGCNLNASSFNPIFGCISKLGDVN 1438

Query: 225  KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
             A  +  +M D    PN  TYNI+++ +      +   +   EM + + E +  TY  ++
Sbjct: 1439 SAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLI 1498

Query: 285  HGFGVVGEIKRARNVFDGMVNGGVL-PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
              F  +G    A + F  M+    L PS+  Y  ++Q L K   ++    + E+MV +G+
Sbjct: 1499 STFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVEKMVNRGF 1558

Query: 344  M 344
            +
Sbjct: 1559 V 1559



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 79/183 (43%), Gaps = 4/183 (2%)

Query: 280  YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
            Y  ++   G V +   A  + D M    V   V T+  +++   K      A+  F  M 
Sbjct: 1181 YMEMIDLAGKVRQFDLAWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVHAFNRME 1240

Query: 340  GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
              G  P+   ++VVI  L        A  F   +KD   EP+V  Y  L+  +C AG I 
Sbjct: 1241 DYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKD-RFEPDVVVYTSLVHGWCRAGNIS 1299

Query: 400  RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
                +F +M      PN+ TY+I+I ++    +S  +  A  +  EM+D G  P   TFN
Sbjct: 1300 EAERVFGEMKMAGIXPNVYTYSIVIDALC---RSGQITRAHDVFSEMIDVGCDPNAITFN 1356

Query: 460  RVL 462
             ++
Sbjct: 1357 NLM 1359



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 4/130 (3%)

Query: 362  EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
            + + A + +  MK    E  V+T+ IL+R +  AG     +  F +M    C P+   ++
Sbjct: 1193 QFDLAWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFS 1252

Query: 422  ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481
            ++ISS+  ++++   + A      + DR F P    +  +++G    GN   A+ +    
Sbjct: 1253 VVISSLSKKRRA---IEAQSFFDSLKDR-FEPDVVVYTSLVHGWCRAGNISEAERVFGEM 1308

Query: 482  SRCGRLPRQF 491
               G  P  +
Sbjct: 1309 KMAGIXPNVY 1318



 Score = 40.4 bits (93), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/137 (20%), Positives = 57/137 (41%), Gaps = 2/137 (1%)

Query: 104  SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
            SSF+      ++L D  +   +  +MK L   P   T+ I+   +      D  +K+   
Sbjct: 1422 SSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKE 1481

Query: 164  MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVK 221
            M E+    + N++  ++   C       AY+ FK  +     +  +  Y ++        
Sbjct: 1482 MDENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAG 1541

Query: 222  RTNKALEVLKEMVDRGL 238
            +  K  E++++MV+RG 
Sbjct: 1542 QLKKHEELVEKMVNRGF 1558


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 116/363 (31%), Positives = 193/363 (53%), Gaps = 7/363 (1%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           TLV    S    P   T++I+A+     G+ D A ++   M  +GC  +L ++NT++D L
Sbjct: 101 TLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGL 160

Query: 184 CKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CK  K EKAY L +      F  DV++Y +I +G C   R +KAL++++ M+ RG  P++
Sbjct: 161 CKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSV 220

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TY  +++G  R G+++EA   F EM  + C  D + Y ++V+G+      K A+ V DG
Sbjct: 221 ITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDG 280

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           +      P +  YNA++   CK+  ++    VFE+M  +G +PN  TYN+V+ GLC  G+
Sbjct: 281 IRG---TPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGK 337

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           ++ A  F+  M    C P+V +YNI+I     A + +   ++ ++M      P+  TYN 
Sbjct: 338 VDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNT 397

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           L++     ++ DD   A  +L  M+  G  P   T+N +++GL      G A E++    
Sbjct: 398 LMAQFCKEERFDD---AVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEML 454

Query: 483 RCG 485
           R G
Sbjct: 455 RNG 457



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 119/396 (30%), Positives = 193/396 (48%), Gaps = 38/396 (9%)

Query: 102 SPSSFDHAIDLAARLRDYRT--VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           +P  F + I +    +  +T     ++H M    + P   TF  I +    AGK +RA  
Sbjct: 7   APDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHS 66

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWC 218
           +   M E  CR S  ++NT++  LCK++ V++A  L   F    F  DV++Y+++A+G C
Sbjct: 67  LLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLC 126

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
              R ++A E++KEM   G  PNL TYN ++ G  +A + E+A+     +       DVV
Sbjct: 127 KRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVV 186

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TYT IV G    G + +A  + +GM+  G  PSV TY A+++ LC+   V+ A  +F+EM
Sbjct: 187 TYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEM 246

Query: 339 VGK--------------GYMPNSTT------------------YNVVIRGLCHTGEMERA 366
           V K              GY  +S T                  YN ++ G C  G ++  
Sbjct: 247 VSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEI 306

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
                 M    C PN++TYNI++   C  G+++      E M S  C+P++ +YNI+I  
Sbjct: 307 PNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDG 366

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           +F   K  +   A ++L +M+  G  P   T+N ++
Sbjct: 367 LFKASKPKE---ARQVLDQMIQAGIPPDAVTYNTLM 399



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 102/393 (25%), Positives = 183/393 (46%), Gaps = 36/393 (9%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M    + P   T+ I+ +    A K D+A ++   M + G      +FN+I+D LCK  K
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60

Query: 189 VEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
            E+A++L  V   +  +    +YN + +G C  +  ++A  ++ E V  G  P++ TY+I
Sbjct: 61  FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSI 120

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           +  G  + G+I+EA+    EM    C  ++VTY T++ G     + ++A  + + +V+ G
Sbjct: 121 LADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSG 180

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
            +P V TY  ++  LCK+  ++ A+ + E M+ +G  P+  TY  ++ GLC TG ++ A 
Sbjct: 181 FVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAH 240

Query: 368 EFVGRMKDDEC--------------------------------EPNVQTYNILIRYFCDA 395
                M   +C                                 P +  YN L+  +C  
Sbjct: 241 HIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKE 300

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
           G ++    +FE M    C+PN+ TYNI++  +    K D+   A   L  M   G +P  
Sbjct: 301 GRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDE---AFPFLESMHSAGCVPDV 357

Query: 456 FTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            ++N +++GL        A+++L    + G  P
Sbjct: 358 VSYNIIIDGLFKASKPKEARQVLDQMIQAGIPP 390



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 116/419 (27%), Positives = 199/419 (47%), Gaps = 46/419 (10%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   +       + L+  + S    P   T+ II +     G+ D+A+K+   M
Sbjct: 152 TYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGM 211

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
            + GC  S+ ++  +++ LC+  +V++A+++FK    K   AD ++Y  + NG+C   RT
Sbjct: 212 LKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRT 271

Query: 224 NKALEVL--------------------------------KEMVDRGLNPNLTTYNIVLKG 251
            +A +V+                                ++M  RG  PN+ TYNIV+ G
Sbjct: 272 KEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDG 331

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
             + G+++EA+ F   M    C  DVV+Y  I+ G     + K AR V D M+  G+ P 
Sbjct: 332 LCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPD 391

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
             TYN ++   CK++  ++A+ + + M+  G  P++ TYN +I GL  T  +  A E + 
Sbjct: 392 AVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMH 451

Query: 372 RMKDDECEPNV-QTYNILIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISSMFV 429
            M  + C  +   TYN +I   C  G +++ L L + M G GV   N  TYNI I  +  
Sbjct: 452 EMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGV-EANTVTYNIFIDRLCK 510

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL----LIGNQGLAKEILRLQSRC 484
             + D+   A  LL EM     +  + ++  V+ GL     L     LA+E++ ++  C
Sbjct: 511 EGRLDE---ASSLLSEM---DTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLC 563



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 173/380 (45%), Gaps = 41/380 (10%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P    +  + + Y   G+ D    +F  M   GC  ++ ++N ++D LCK  KV++A+  
Sbjct: 285 PYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPF 344

Query: 196 FK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            + +       DV+SYN+I +G     +  +A +VL +M+  G+ P+  TYN ++  + +
Sbjct: 345 LESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCK 404

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV-NGGVLPSVA 313
             + ++A      M K   + D VTY T++ G      +  A  +   M+ NG V+ +  
Sbjct: 405 EERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACT 464

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           TYN +I  LCK+  ++ A+L+ + M G G   N+ TYN+ I  LC  G ++ A   +  M
Sbjct: 465 TYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEM 524

Query: 374 KD--DE----------CEP---------------------NVQTYNILIRYFCDAGEIER 400
               DE          C+                         T+N+LI  F     ++ 
Sbjct: 525 DTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDE 584

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
            L L E M    C P++ TYN++I+ +    K D    A +L  EM  RG +    ++  
Sbjct: 585 ALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDK---AWELFDEMAVRGIVASSVSYTV 641

Query: 461 VLNGLLLIGNQGLAKEILRL 480
           ++ GL     QG  KE L++
Sbjct: 642 LIYGLC---GQGRGKEALQV 658



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 133/288 (46%), Gaps = 8/288 (2%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS-LNSFNTILDLL 183
           ++  M    + P   T+  +        +   A ++   M  +GC  S   ++NTI+D L
Sbjct: 414 ILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRL 473

Query: 184 CKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CKE  +++A  L     G   +A+ ++YN+  +  C   R ++A  +L EM       + 
Sbjct: 474 CKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEM---DTLRDE 530

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRK--CEIDVVTYTTIVHGFGVVGEIKRARNVF 300
            +Y  V+ G  +A Q++ A +   EM   K  C I   T+  ++  F     +  A  + 
Sbjct: 531 VSYTTVIIGLCKAEQLDRASKLAREMVAVKGLC-ITSHTFNLLIDAFTKTKRLDEALTLL 589

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           + MV  G  PSV TYN +I  LCK D V+ A  +F+EM  +G + +S +Y V+I GLC  
Sbjct: 590 ELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQ 649

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           G  + AL+ +  M   +CE +      L       G  E   EL  +M
Sbjct: 650 GRGKEALQVLEEMASSDCEIDDLKCRKLYLALRGQGRGEEAAELLRRM 697


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  204 bits (520), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 125/390 (32%), Positives = 195/390 (50%), Gaps = 4/390 (1%)

Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
            H+  S +  I+   RL       +++ +M  L + P   TF  +     + GK   AV 
Sbjct: 128 THNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVG 187

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWC 218
           +F  M   G   ++ S+NT+++ LCK      A  +F K+ + + K +V++YN I +  C
Sbjct: 188 LFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLC 247

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
             +  N+A+E L EMVDRG+ P++ TYN +L G+   GQ+ EA R F EM  R    D V
Sbjct: 248 KDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTV 307

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           T+  +V G    G +  AR V + M   G  P+  TYNA++   C  + ++ AI V   M
Sbjct: 308 TFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIM 367

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
           +GKG  PN ++YN++I G C +  M  A   +  M +    P+  TY+ L++  C  G  
Sbjct: 368 IGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRP 427

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
              L LF++M S   LP+L  Y+IL+         D+ L   KLL EM +R   P    +
Sbjct: 428 REALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEAL---KLLKEMHERRIKPNIILY 484

Query: 459 NRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             ++ G+ + G   +AKE+    S  G  P
Sbjct: 485 TILIRGMFIAGKLEVAKELFSKLSADGIRP 514



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 184/360 (51%), Gaps = 4/360 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   + R        +  M    + P   T+  I   + S G+ + A ++F  M
Sbjct: 238 TYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEM 297

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
                     +FN ++D LCKE  V +A  + +    K  + +  +YN + +G+CL  + 
Sbjct: 298 VGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQM 357

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           ++A++VL  M+ +G  PNL++YNI++ GY ++ ++ EA R   EM ++    D VTY+T+
Sbjct: 358 DEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTL 417

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G   VG  + A N+F  M + G+LP +  Y+ ++   CK   ++ A+ + +EM  +  
Sbjct: 418 MQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRI 477

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN   Y ++IRG+   G++E A E   ++  D   P++ TYN++I+     G  +   E
Sbjct: 478 KPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYE 537

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
            F KM     LP+  +YN++I       ++ D   A +L+ EMV + F     TF  +L+
Sbjct: 538 FFRKMEDDGFLPDSCSYNVIIQGFL---QNQDSSTAIQLIDEMVGKRFSADSSTFQMLLD 594



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 144/296 (48%), Gaps = 5/296 (1%)

Query: 194 NLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
           + +++ R   +  V+ +          K+ + A+ +  +M   G+  N+ + N+++    
Sbjct: 83  SFYRMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLC 142

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
           R   ++ A     +M K   + D +T+ T+++G    G+IK A  +F+ MV  G  P+V 
Sbjct: 143 RLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVI 202

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           +YN +I  LCK  +   A+ VF +M      PN  TYN +I  LC    +  A+EF+  M
Sbjct: 203 SYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEM 262

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
            D    P+V TYN ++  FC  G++     LF++M     +P+  T+NIL+  +      
Sbjct: 263 VDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLC----K 318

Query: 434 DDLLVAGKLLIE-MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           + ++   + + E M ++G  P  +T+N +++G  L      A ++L +    G  P
Sbjct: 319 EGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAP 374



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 116/261 (44%), Gaps = 11/261 (4%)

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + AL     MV     P++  +   L    +  Q   A     +M       +V +   +
Sbjct: 78  DDALTSFYRMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVL 137

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++    +  +  A +V   M   G+ P   T+N +I  LC +  ++ A+ +F EMV  G+
Sbjct: 138 INCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGH 197

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN  +YN VI GLC  G    A+    +M+ +  +PNV TYN +I   C    +   +E
Sbjct: 198 EPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVE 257

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
              +M      P++ TYN ++       + ++   A +L  EMV R  MP   TFN +++
Sbjct: 258 FLSEMVDRGIPPDVVTYNTILHGFCSLGQLNE---ATRLFKEMVGRNVMPDTVTFNILVD 314

Query: 464 GLLLIGNQGLAKEILRLQSRC 484
                   GL KE +  ++RC
Sbjct: 315 --------GLCKEGMVSEARC 327



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 106/225 (47%), Gaps = 7/225 (3%)

Query: 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
            I++A   F  M +      VV +   +       +   A ++ + M   GV  +V + N
Sbjct: 76  SIDDALTSFYRMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLN 135

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
            +I  LC+   V+ A+ V  +M   G  P++ T+N +I GLC+ G+++ A+     M   
Sbjct: 136 VLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWS 195

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
             EPNV +YN +I   C  G     + +F KM      PN+ TYN +I S+       D 
Sbjct: 196 GHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSL-----CKDR 250

Query: 437 LV--AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           LV  A + L EMVDRG  P   T+N +L+G   +G    A  + +
Sbjct: 251 LVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFK 295



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 112/252 (44%), Gaps = 36/252 (14%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           SS++  I+   + +       L+  M   +L P   T++ + +     G+   A+ +F  
Sbjct: 377 SSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKE 436

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKR 222
           M   G    L +++ +LD  CK   +++A  L K +   + K ++I Y ++  G  +  +
Sbjct: 437 MCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGK 496

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
              A E+  ++   G+ P++ TYN+++KG  + G  +EA+ FF +M+      D  +Y  
Sbjct: 497 LEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNV 556

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           I+ GF                                  L  +DS   AI + +EMVGK 
Sbjct: 557 IIQGF----------------------------------LQNQDS-STAIQLIDEMVGKR 581

Query: 343 YMPNSTTYNVVI 354
           +  +S+T+ +++
Sbjct: 582 FSADSSTFQMLL 593


>gi|224077524|ref|XP_002305285.1| predicted protein [Populus trichocarpa]
 gi|222848249|gb|EEE85796.1| predicted protein [Populus trichocarpa]
          Length = 523

 Score =  204 bits (520), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 123/449 (27%), Positives = 215/449 (47%), Gaps = 5/449 (1%)

Query: 24  PLTTTSP-APLPPAAADPAALASLILTSTDPR-TLTQTLHCPSLHWTPQLVDQIIKRLWN 81
           PL+T +P   +PP       ++ ++    +P   L  +L+  S   +  LV+Q++KR  N
Sbjct: 31  PLSTLTPLNQIPPLPGLVNEISRILSDQRNPHHDLETSLNAFSSEISTNLVEQVLKRCKN 90

Query: 82  HALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMK-SLSLGPTQKT 140
               A  FF      P + HS  S+   +++    R +  +W  +  M+ S      Q+ 
Sbjct: 91  LGFSAHRFFLWAKRIPGFEHSEESYHILVNILGTSRQFAILWDFLIEMRESHDFEINQEI 150

Query: 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR 200
             ++   Y  A     A++ F  M E G R S++  + +L +LCK K V+ A   F   +
Sbjct: 151 IWLVFRSYSRANLPSDAIRAFDRMAEFGLRPSVDDLDKLLYVLCKCKHVKCAQQFFDRVK 210

Query: 201 GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
            KF+A   +Y+++  GW  +    +A +V  EM  RG   ++  YN +L+   + G ++E
Sbjct: 211 HKFEAKAKTYSILVRGWGDIGEAVEARKVFDEMRGRGCALDVLAYNSLLEALCKGGNVDE 270

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
           A++ F E+     E D  +Y   +  +     I    +V D M    ++P+V TYN +I+
Sbjct: 271 AYKMFREIGSHGVEPDACSYAIFIRAYCEANNIHSVFSVLDRMKRYDLVPNVFTYNCIIK 330

Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
            LCK   VE+A  +  EM+ +G  P++ +YN ++   C   E+ RA + +  M  D C P
Sbjct: 331 KLCKNGKVEDAYQLLHEMMERGVSPDAWSYNTILAYHCEHSEVNRATKLISIMVKDNCLP 390

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAG 440
           +  +YN+L++     G  +R  E++E MG     P++ TY+++I  +   KK   L  A 
Sbjct: 391 DRHSYNMLLKLLVRVGRFDRATEIWESMGERGFYPSVSTYSVMIHGLC--KKKGKLEEAC 448

Query: 441 KLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
           +    M+D G  P   T   + N L+  G
Sbjct: 449 RYFETMIDEGIPPYASTIEMLRNRLIGFG 477


>gi|357520891|ref|XP_003630734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524756|gb|AET05210.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 520

 Score =  204 bits (520), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 126/435 (28%), Positives = 210/435 (48%), Gaps = 7/435 (1%)

Query: 26  TTTSPAPLPPAAADPAALASLILTSTDPR-TLTQTLHCPSLHWTPQLVDQIIKRLWNHAL 84
           T     PL P   +   ++ ++     PR  L  +L   S   +  LV+Q++KR  +   
Sbjct: 31  TQQISVPLLPELVN--EISRIVSDHRHPRHDLELSLTPFSTQISTDLVEQVLKRCNHLGF 88

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLV--HRMKSLSLGPTQKTFA 142
            A  FF      P + HS  SF   +++  R + +  +W  +   R    S   T + F 
Sbjct: 89  SAHRFFLWAKSIPGFQHSVQSFHILVEILGRSKQFAILWDFLIETRESDSSCKITNEIFW 148

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK 202
           II   Y  A   D A++ F+ M E G + S+   + +L  LCK+K V +A   F   +  
Sbjct: 149 IIFTAYSRADLPDGAIRSFVRMDEFGIKPSIIDVDLLLYTLCKKKHVRQAQQFFDQVKSH 208

Query: 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262
           F     +Y+++ NGW  +  + KA E+   M+++G + +L  YN +L+   + G ++EA 
Sbjct: 209 FLLTTKTYSILINGWGKIGDSGKARELFDAMLEQGCHVDLLAYNNLLEALCKGGHVDEAM 268

Query: 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322
            F  +M  +K E D  TY+  +  +     +  A  V D M    +LP+V TYN +I+ L
Sbjct: 269 DFLNDMLSKKVEPDAFTYSIFIRSYCDANNVHSAFGVLDKMRRCNLLPNVFTYNCIIKRL 328

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
           CK   VE A  + +EM+  G  P++ +YN +    C   E+ RAL+ + RM+ D C P+ 
Sbjct: 329 CKIKKVEEAYQLLDEMISSGLKPDTWSYNAIQAYHCDHCEVNRALKLISRMEKDVCFPDR 388

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
            TYN++++     G  ++  E++E MG     P++ TY+++I  +   KK   L  A K 
Sbjct: 389 HTYNMVLKLLIRIGRFDKATEVWECMGDKKFYPSVSTYSVMIHGLC--KKKGKLEEACKY 446

Query: 443 LIEMVDRGFMPRKFT 457
              M+D G  P   T
Sbjct: 447 FAMMIDEGIPPYDTT 461



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 151/313 (48%), Gaps = 7/313 (2%)

Query: 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVIS---YNVIANGWCLVKRTN 224
           G + S+ SF+ ++++L + K+    ++     R    +  I+   + +I   +      +
Sbjct: 102 GFQHSVQSFHILVEILGRSKQFAILWDFLIETRESDSSCKITNEIFWIIFTAYSRADLPD 161

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
            A+     M + G+ P++   +++L    +   + +A +FF ++K     +   TY+ ++
Sbjct: 162 GAIRSFVRMDEFGIKPSIIDVDLLLYTLCKKKHVRQAQQFFDQVKSHFL-LTTKTYSILI 220

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
           +G+G +G+  +AR +FD M+  G    +  YN +++ LCK   V+ A+    +M+ K   
Sbjct: 221 NGWGKIGDSGKARELFDAMLEQGCHVDLLAYNNLLEALCKGGHVDEAMDFLNDMLSKKVE 280

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           P++ TY++ IR  C    +  A   + +M+     PNV TYN +I+  C   ++E   +L
Sbjct: 281 PDAFTYSIFIRSYCDANNVHSAFGVLDKMRRCNLLPNVFTYNCIIKRLCKIKKVEEAYQL 340

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
            ++M S    P+  +YN + +      + +  L   KL+  M      P + T+N VL  
Sbjct: 341 LDEMISSGLKPDTWSYNAIQAYHCDHCEVNRAL---KLISRMEKDVCFPDRHTYNMVLKL 397

Query: 465 LLLIGNQGLAKEI 477
           L+ IG    A E+
Sbjct: 398 LIRIGRFDKATEV 410



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 4/168 (2%)

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
           + D  + AI  F  M   G  P+    ++++  LC    + +A +F  ++K        +
Sbjct: 156 RADLPDGAIRSFVRMDEFGIKPSIIDVDLLLYTLCKKKHVRQAQQFFDQVKS-HFLLTTK 214

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
           TY+ILI  +   G+  +  ELF+ M    C  +L  YN L+ ++      D+   A   L
Sbjct: 215 TYSILINGWGKIGDSGKARELFDAMLEQGCHVDLLAYNNLLEALCKGGHVDE---AMDFL 271

Query: 444 IEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
            +M+ +   P  FT++  +       N   A  +L    RC  LP  F
Sbjct: 272 NDMLSKKVEPDAFTYSIFIRSYCDANNVHSAFGVLDKMRRCNLLPNVF 319


>gi|18394846|ref|NP_564110.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174883|sp|Q9LN22.1|PPR54_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g20300, mitochondrial; Flags: Precursor
 gi|9558596|gb|AAF88159.1|AC026234_10 Contains similarity to a hypothetical protein T3P18.15 gi|5454201
           from Arabidopsis thaliana BAC T3P18 gb|AC005698 and
           contains multiple PPR PF|01535 repeats [Arabidopsis
           thaliana]
 gi|17386104|gb|AAL38598.1|AF446865_1 At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|15450347|gb|AAK96467.1| At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|332191838|gb|AEE29959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 537

 Score =  204 bits (519), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 114/381 (29%), Positives = 200/381 (52%), Gaps = 14/381 (3%)

Query: 59  TLHCPSLHWT--------PQLVDQIIKRLWN--HAL---KALHFFNILSYHPTYAH-SPS 104
           TLH  SL ++        P +V  +I++  +  H +   ++L FFN  +    Y H SP 
Sbjct: 93  TLHALSLDFSQIETSQVSPSVVRCVIEKCGSVRHGIPLHQSLAFFNWATSRDDYDHKSPH 152

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
            ++  IDL+ ++R +   W L+  MKS ++  + +TF I+  RYV AG A  AV  F  M
Sbjct: 153 PYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRM 212

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTN 224
            ++GC     +F+ ++  L ++++  +A + F   + +F+ DVI Y  +  GWC     +
Sbjct: 213 EDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRAGEIS 272

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           +A +V KEM   G+ PN+ TY+IV+    R GQI  A   F +M    C  + +T+  ++
Sbjct: 273 EAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLM 332

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
                 G  ++   V++ M   G  P   TYN +I+  C+ +++ENA+ V   M+ K   
Sbjct: 333 RVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCE 392

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
            N++T+N + R +    ++  A     +M + +CEPN  TYNIL+R F  +   +  L++
Sbjct: 393 VNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKM 452

Query: 405 FEKMGSGVCLPNLDTYNILIS 425
            ++M      PN++TY +L++
Sbjct: 453 KKEMDDKEVEPNVNTYRLLVT 473



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 4/183 (2%)

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y  ++   G V +   A ++ D M +  V  S+ T+  +I+   +      A+  F  M 
Sbjct: 154 YNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRME 213

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             G +P+   +++VI  L        A  F   +KD   EP+V  Y  L+R +C AGEI 
Sbjct: 214 DYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKD-RFEPDVIVYTNLVRGWCRAGEIS 272

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
              ++F++M      PN+ TY+I+I ++    +   +  A  +  +M+D G  P   TFN
Sbjct: 273 EAEKVFKEMKLAGIEPNVYTYSIVIDALC---RCGQISRAHDVFADMLDSGCAPNAITFN 329

Query: 460 RVL 462
            ++
Sbjct: 330 NLM 332


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score =  204 bits (519), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 124/380 (32%), Positives = 194/380 (51%), Gaps = 4/380 (1%)

Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
            H+  S +  I+   RL       +++ +M  L + PT  TF  +     + GK   AV+
Sbjct: 120 THNVYSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVE 179

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWC 218
           +F  M   G   ++ S+NTI++ LCK      A ++FK + +   K DV++YN I +  C
Sbjct: 180 LFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLC 239

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
             +  N A+E L EM+DRG+ PN+ TYN ++ G+   GQ+ EA R F EM  R    D V
Sbjct: 240 KDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTV 299

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           T T +V G    G +  AR VF+ M   GV P+++TYNA++   C +  +  A  VFE M
Sbjct: 300 TLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIM 359

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
           + +G  P   +YN++I G C +  M+ A   +  M      P+  TY+ L++  C  G  
Sbjct: 360 IRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRP 419

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           +  L +F++M S   LPNL TY+IL+         D+ L   KLL  M ++   P     
Sbjct: 420 KEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEAL---KLLKSMQEKKLEPNIVHH 476

Query: 459 NRVLNGLLLIGNQGLAKEIL 478
             ++ G+ + G   +AKE+ 
Sbjct: 477 TILIEGMFIAGKLEVAKELF 496



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 178/360 (49%), Gaps = 4/360 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   + R        +  M    + P   T+  +   +   G+ + A ++F  M
Sbjct: 230 TYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEM 289

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
                     +   ++D LCKE  V +A  +F+    K  + ++ +YN + +G+CL +  
Sbjct: 290 VGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLM 349

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           N+A +V + M+ +G  P + +YNI++ G+ ++ +++EA     EM  +    D VTY+T+
Sbjct: 350 NEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTL 409

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G    G  K A N+F  M + G+LP++ TY+ ++   CK   ++ A+ + + M  K  
Sbjct: 410 MQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKL 469

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN   + ++I G+   G++E A E   ++  D   P ++TY ++I+     G  +   +
Sbjct: 470 EPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYD 529

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           LF KM     LPN  +YN++I       ++ D   A +L+ EMV + F     TF  +L+
Sbjct: 530 LFRKMEDDGFLPNSCSYNVMIQGFL---QNQDSSTAIRLIDEMVGKRFSANLSTFQMLLD 586



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 148/341 (43%), Gaps = 51/341 (14%)

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE------KAYNLFKVFRGKFKADVI 208
           D A+  F  M     R S+  F   L    K+K+           +LF V       +V 
Sbjct: 70  DDALASFYRMVRMNPRPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGV-----THNVY 124

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           S NV+ N  C +   + A+ +L +M   G++P  +T+N                      
Sbjct: 125 SLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFN---------------------- 162

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
                         +++G    G+IK A  +F+ MV  G  P+V +YN +I  LCK  + 
Sbjct: 163 -------------ALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNT 209

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
             A+ VF++M   G  P+  TYN +I  LC    +  A+EF+  M D    PNV TYN +
Sbjct: 210 SMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCM 269

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE-MV 447
           +  FC  G++     LF++M     +P+  T  IL+  +      + ++   +L+ E M 
Sbjct: 270 VHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLC----KEGMVSEARLVFETMT 325

Query: 448 DRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           ++G  P   T+N +++G  L      AK++  +  R G  P
Sbjct: 326 EKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAP 366


>gi|357444525|ref|XP_003592540.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481588|gb|AES62791.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 507

 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 126/443 (28%), Positives = 217/443 (48%), Gaps = 11/443 (2%)

Query: 47  ILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSF 106
           IL++T    +  +L    +  +P+LV  ++ +L N  + AL FF        + H+   F
Sbjct: 64  ILSTTPESPVDVSLRNFPVEVSPELVVAVLNKLSNAGILALSFFRWAEKQQGFNHNTEIF 123

Query: 107 DHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE 166
              I+   ++R ++ +W LV  MK   L     TF++IA RYV A     A+K F  M +
Sbjct: 124 HALIEALGKIRQFKMIWNLVDEMKQRKLL-NGDTFSLIARRYVRAKVIKEALKTFERMEK 182

Query: 167 HGCRQSLNSFNTILDLLCKEK-KVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTN 224
           +G +  ++ FN ++D+LCK K  VEKA  LF K+ +   + ++ SY ++  GW   +   
Sbjct: 183 YGLKPQISDFNKLIDVLCKSKFHVEKAQELFDKMRQWNLEPNLKSYTILIEGWSQQQNLL 242

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           K  EV +EM D G  P++ TY I++  Y +A + +EA   + +M  +        Y T +
Sbjct: 243 KVDEVCREMKDDGFQPDVVTYGIIINAYCKAKKYDEAIGIYHDMLSKNVNPSPHIYCTFI 302

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            G G    +  A   F+     G  P   TYNA++   C    +++A  +  EM   G  
Sbjct: 303 TGLGNGSRMDEAFEFFEKSKASGFPPEAPTYNAVVSAYCWSMRIDDAYRIVGEMKELGIG 362

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE-CEPNVQTYNILIRYFCDAGEIERGLE 403
           PN+ TY++++  L   G  + A     RM  +  CEP+V TY I++R FC+  +++  + 
Sbjct: 363 PNARTYDIILVHLIKGGRTKEAYSVFQRMSSETGCEPSVSTYAIMVRMFCNENQLDMAMV 422

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           ++ +M     LP +  ++ LI S+    K DD   A +   +M+D G  P    F+    
Sbjct: 423 VWNEMKDKGILPGIHMFSTLIISLCHENKLDD---ACRYFQQMLDVGIRPTANMFSAFKR 479

Query: 464 GLLLIGNQG----LAKEILRLQS 482
            L+  G +      AK++ +L++
Sbjct: 480 ALMAAGMENTVIHFAKKVDKLRN 502


>gi|357156708|ref|XP_003577549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Brachypodium distachyon]
          Length = 522

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 139/475 (29%), Positives = 227/475 (47%), Gaps = 27/475 (5%)

Query: 15  FFCIYRGLSPLTTTSPAPLPPAAADPAA--LASLILTSTDP----RTLTQTLHCPSLHWT 68
           F C     + L  T    LPP    PAA  LA L+L+  +P     +  Q L    +  +
Sbjct: 16  FLCTMTADTTLFPTHLLALPPVVPSPAADELARLLLSHHNPFHPAESTLQLLSGGGVSLS 75

Query: 69  PQLVDQIIKRLWNHALKALHFFNILSYHPTYAH----SPSSFDHAIDLAARLRDYRTVWT 124
             L+ QI+ RL   +  AL   N    HP+ +     +  ++D  +D   R   +   W 
Sbjct: 76  QSLLVQILLRLRGASKLALSLLNSARLHPSPSVSSPPNADAYDAVVDALGRAHQFDAAWR 135

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ-SLNSFNTILDLL 183
           LV    +     T +TFA++A RYV+AG   +AV+ F  M     R+     F T+LD L
Sbjct: 136 LVVEAAA-DGAATSRTFAVLARRYVAAGMTRQAVRAFDDMEAFVGREPDAGEFTTLLDTL 194

Query: 184 CKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           CK K  + A  +F   + K++ +   Y ++  GWC V R + + + LK+M+D G+ PN+ 
Sbjct: 195 CKYKYPKVATEVFNKRKYKYEPNEKMYTILIYGWCKVNRNDMSQKFLKDMIDHGIEPNVV 254

Query: 244 TYNIVLKGYFRAGQIEEAWRF----------FLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           TYNI+L G  R   +    RF            EM+ R  E DV +Y+ ++H +    + 
Sbjct: 255 TYNILLNGVCRHASLHPDNRFDRTVRAAEDLLKEMRDRGIEPDVTSYSIVLHVYSRAHKA 314

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           +    +F  M + G+ P+VATY ++I+ L     +E+A  +  EM  +G  P+  TYN  
Sbjct: 315 ELCLCMFRSMKDRGICPTVATYTSVIKCLASCGRLEDAERLLHEMASEGVCPSPATYNCF 374

Query: 354 IRGLCHTGEMERALEFVGRMK--DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
            +      ++  ALE   +MK       P++ +Y+IL+  F    +     EL+  M   
Sbjct: 375 FKEYRGRKDVIGALELYKKMKAPASPTAPDIHSYHILLGMFVKLNQHGTVTELWNDMCES 434

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
              P+LD+Y +LI      +K  +   A +  +EM+++GF+P+K TF  +  GL+
Sbjct: 435 TVGPDLDSYTLLIHGFCENEKWRE---ACQFFMEMIEKGFLPQKITFEILYRGLI 486



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 93/213 (43%), Gaps = 3/213 (1%)

Query: 117 RDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSF 176
           R  R    L+  M+   + P   +++I+   Y  A KA+  + +F SM + G   ++ ++
Sbjct: 277 RTVRAAEDLLKEMRDRGIEPDVTSYSIVLHVYSRAHKAELCLCMFRSMKDRGICPTVATY 336

Query: 177 NTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235
            +++  L    ++E A  L      +       +YN     +   K    ALE+ K+M  
Sbjct: 337 TSVIKCLASCGRLEDAERLLHEMASEGVCPSPATYNCFFKEYRGRKDVIGALELYKKMKA 396

Query: 236 RG--LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
                 P++ +Y+I+L  + +  Q       + +M +     D+ +YT ++HGF    + 
Sbjct: 397 PASPTAPDIHSYHILLGMFVKLNQHGTVTELWNDMCESTVGPDLDSYTLLIHGFCENEKW 456

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           + A   F  M+  G LP   T+  + + L + D
Sbjct: 457 REACQFFMEMIEKGFLPQKITFEILYRGLIQAD 489



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 32/150 (21%), Positives = 69/150 (46%), Gaps = 7/150 (4%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS--LNSFNTILDL 182
           L+H M S  + P+  T+    + Y        A++++  M       +  ++S++ +L +
Sbjct: 355 LLHEMASEGVCPSPATYNCFFKEYRGRKDVIGALELYKKMKAPASPTAPDIHSYHILLGM 414

Query: 183 LCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
             K  +      L+  +       D+ SY ++ +G+C  ++  +A +   EM+++G  P 
Sbjct: 415 FVKLNQHGTVTELWNDMCESTVGPDLDSYTLLIHGFCENEKWREACQFFMEMIEKGFLPQ 474

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
             T+ I+ +G  +A  +   WR    +KKR
Sbjct: 475 KITFEILYRGLIQADML-RTWR---RLKKR 500


>gi|125561327|gb|EAZ06775.1| hypothetical protein OsI_29018 [Oryza sativa Indica Group]
          Length = 511

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 140/463 (30%), Positives = 227/463 (49%), Gaps = 26/463 (5%)

Query: 26  TTTSPAPLPPAAADPAA--LASLILTSTDP----RTLTQTLHCPSLHWTPQLVDQIIKRL 79
           TTT    LPP    PAA  LA L+L   +P     +  Q L    +  T  L+ Q++ RL
Sbjct: 17  TTTHLLALPPVEPSPAADELARLLLAHHNPFHPAESPLQLLSGGGVSLTGDLLVQLLLRL 76

Query: 80  WNHALKALHFFNILSYHPTYAHSP---SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGP 136
              +  AL   +    HP  A S     ++D  +D   R R +   W LV    +     
Sbjct: 77  RGASKLALSLLHAARLHPPPAASSRAADAYDAVVDALGRARQFDAAWRLVVEAAADGAA- 135

Query: 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ-SLNSFNTILDLLCKEKKVEKAYNL 195
           T +TFA++A RYV+AG   +AV+ F  M     R+     F T+LD LCK K  + A  +
Sbjct: 136 TPRTFAVLARRYVAAGMTRQAVRAFDDMEAFVGREPDAAEFTTLLDTLCKYKYPKVAAEV 195

Query: 196 FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
           F   + K++ +   Y V+  GWC V R + A + LK+M+  G+ PN+ TYNI+L G  R 
Sbjct: 196 FNKRKYKYEPNEKMYTVLIYGWCKVNRNDMAQKFLKDMIYHGIEPNIVTYNILLNGICRH 255

Query: 256 GQIEEAWRF----------FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
             +   +RF            EM +R  E DV +Y+ I+H +    + +    +F  M  
Sbjct: 256 ASLHPDYRFDRTVRAAEDLLKEMHQRGIEPDVTSYSVILHVYSRAHKPELCLCMFRSMKE 315

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G+ P+VATY ++I+ L     +++A  + +EM  +G  P+  TYN   +      ++  
Sbjct: 316 RGICPTVATYTSVIKCLASCGRLDDAESLLDEMASEGVCPSPATYNCFFKEYRGRKDVNG 375

Query: 366 ALEFVGRMK--DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           AL+   +MK       P++ TYNIL+  F    + +  ++++  M      P+L++Y +L
Sbjct: 376 ALQLYNKMKAPGSPATPDIHTYNILLGMFIKLNQHDTVMQVWNDMCESTVGPDLNSYTLL 435

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
           +  +   KK  +   A +  +EM++RGF+P+K TF  +  GL+
Sbjct: 436 VHGLCDNKKWRE---ACQFFMEMIERGFLPQKITFETLYRGLI 475



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 94/213 (44%), Gaps = 3/213 (1%)

Query: 117 RDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSF 176
           R  R    L+  M    + P   ++++I   Y  A K +  + +F SM E G   ++ ++
Sbjct: 266 RTVRAAEDLLKEMHQRGIEPDVTSYSVILHVYSRAHKPELCLCMFRSMKERGICPTVATY 325

Query: 177 NTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235
            +++  L    +++ A +L      +       +YN     +   K  N AL++  +M  
Sbjct: 326 TSVIKCLASCGRLDDAESLLDEMASEGVCPSPATYNCFFKEYRGRKDVNGALQLYNKMKA 385

Query: 236 RG--LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
            G    P++ TYNI+L  + +  Q +   + + +M +     D+ +YT +VHG     + 
Sbjct: 386 PGSPATPDIHTYNILLGMFIKLNQHDTVMQVWNDMCESTVGPDLNSYTLLVHGLCDNKKW 445

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           + A   F  M+  G LP   T+  + + L + D
Sbjct: 446 REACQFFMEMIERGFLPQKITFETLYRGLIQAD 478



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 32/151 (21%), Positives = 70/151 (46%), Gaps = 7/151 (4%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS--LNSFNTILD 181
           +L+  M S  + P+  T+    + Y      + A++++  M   G   +  ++++N +L 
Sbjct: 343 SLLDEMASEGVCPSPATYNCFFKEYRGRKDVNGALQLYNKMKAPGSPATPDIHTYNILLG 402

Query: 182 LLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
           +  K  + +    ++  +       D+ SY ++ +G C  K+  +A +   EM++RG  P
Sbjct: 403 MFIKLNQHDTVMQVWNDMCESTVGPDLNSYTLLVHGLCDNKKWREACQFFMEMIERGFLP 462

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
              T+  + +G  +A  +   WR    +KKR
Sbjct: 463 QKITFETLYRGLIQADML-RTWR---RLKKR 489


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 116/381 (30%), Positives = 196/381 (51%), Gaps = 5/381 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S+   I+   +L        ++ +M      P   T+  + + +   G  D AV++   M
Sbjct: 116 SYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKM 175

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR--GKFKADVISYNVIANGWCLVKR 222
            E G R +  ++N I+  LC  +K++ A  LFK     G    DV +Y+ I +      +
Sbjct: 176 TERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGK 235

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
            + A  +++ MV +G +PN+ TY+ +L G  +AG+++EA      M +  C  ++VTY T
Sbjct: 236 VDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNT 295

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           I+ G   +G I  A ++ + MV+GG  P+V TY  ++   CK    E+AI + E MV KG
Sbjct: 296 IIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKG 355

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
           Y+PN  TYN ++   C   E+ERA + +  M    C PNV +YN +I   C A ++  G+
Sbjct: 356 YVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGV 415

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
            L E+M S  C+P++ T+N +I +M    + D   +A +L   + + G  P   T+N ++
Sbjct: 416 LLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVD---IAYELFNLIQESGCTPNLVTYNSLV 472

Query: 463 NGLLLIGNQGLAKEILRLQSR 483
           +GL        A+ +LR  +R
Sbjct: 473 HGLCKSRRFDQAEYLLREMTR 493



 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 114/381 (29%), Positives = 199/381 (52%), Gaps = 8/381 (2%)

Query: 87  LHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAE 146
           LHF  +    P  + + ++  + +  + RL D      L+  M      P   ++  +  
Sbjct: 31  LHFREMSKTCPPDSVTYNTMINGLSKSDRLDD---AIRLLEEMVDNGFAPNVFSYNTVLH 87

Query: 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKA 205
            +  A + + A+ +   M   GC   + S+ T+++ LCK  +V++A  +  K+ +   + 
Sbjct: 88  GFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQP 147

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           +VI+Y  + +G+C V   + A+E++++M +RG  PN  TYN ++ G     +++ A + F
Sbjct: 148 NVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLF 207

Query: 266 LEMKKR-KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
            EM++   C  DV TY+TIV      G++  A  + + MV+ G  P+V TY++++  LCK
Sbjct: 208 KEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCK 267

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
              ++ A  + + M   G  PN  TYN +I G C  G ++ A   +  M D  C+PNV T
Sbjct: 268 AGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVT 327

Query: 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLI 444
           Y +L+  FC  G+ E  + L E M     +PNL TYN L+  MF +K  D++  A +LL 
Sbjct: 328 YTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLL-DMFCKK--DEVERACQLLS 384

Query: 445 EMVDRGFMPRKFTFNRVLNGL 465
            M+ +G +P   ++N V+ GL
Sbjct: 385 SMIQKGCVPNVVSYNTVIAGL 405



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/405 (27%), Positives = 200/405 (49%), Gaps = 5/405 (1%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           AL  F  +    +      ++   +D   +         LV  M S    P   T++ + 
Sbjct: 203 ALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLL 262

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFK 204
                AGK D A  +   M   GC  ++ ++NTI+D  CK  ++++AY+L + +  G  +
Sbjct: 263 HGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQ 322

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
            +V++Y V+ + +C   +   A+ +++ MV++G  PNL TYN +L  + +  ++E A + 
Sbjct: 323 PNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQL 382

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
              M ++ C  +VV+Y T++ G     ++     + + M++   +P + T+N +I  +CK
Sbjct: 383 LSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCK 442

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM-KDDECEPNVQ 383
              V+ A  +F  +   G  PN  TYN ++ GLC +   ++A   +  M +   C P++ 
Sbjct: 443 TYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDII 502

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
           TYN +I   C +  ++R  +LF +M S    P+  TY+I+ISS+   +  D+   A  +L
Sbjct: 503 TYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDE---ANNVL 559

Query: 444 IEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             M+  GF P   T+  +++G    GN   A EIL+L    G  P
Sbjct: 560 ELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYP 604



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 158/307 (51%), Gaps = 4/307 (1%)

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRT 223
           M+  G +       +IL  LC   +   A   F+        D ++YN + NG     R 
Sbjct: 1   MNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRL 60

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A+ +L+EMVD G  PN+ +YN VL G+ +A ++E A     +M  R C  DVV+YTT+
Sbjct: 61  DDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTV 120

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++G   + ++  A  V D M+  G  P+V TY  ++   C+   ++ A+ +  +M  +GY
Sbjct: 121 INGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGY 180

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD-ECEPNVQTYNILIRYFCDAGEIERGL 402
            PN+ TYN ++ GLC   +++ AL+    M++   C P+V TY+ ++     +G+++   
Sbjct: 181 RPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDAC 240

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
            L E M S  C PN+ TY+ L+  +    K D+   A  LL  M   G  P   T+N ++
Sbjct: 241 RLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDE---ATALLQRMTRSGCSPNIVTYNTII 297

Query: 463 NGLLLIG 469
           +G   +G
Sbjct: 298 DGHCKLG 304



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 191/386 (49%), Gaps = 5/386 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   +L      + L+  M      P   T+ ++ + +   GKA+ A+ +   M
Sbjct: 292 TYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVM 351

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRT 223
            E G   +L ++N++LD+ CK+ +VE+A  L   + +     +V+SYN +  G C   + 
Sbjct: 352 VEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKV 411

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           ++ + +L++M+     P++ T+N ++    +  +++ A+  F  +++  C  ++VTY ++
Sbjct: 412 HEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSL 471

Query: 284 VHGFGVVGEIKRARNVFDGMV-NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           VHG        +A  +   M    G  P + TYN +I  LCK   V+ A  +F +M+  G
Sbjct: 472 VHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDG 531

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
             P+  TY++VI  LC    M+ A   +  M  +  +P   TY  LI  FC  G +++ L
Sbjct: 532 LAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKAL 591

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           E+ + + S    P++ T++I I  +  R +   L  AG+LL  M+  G +P   T+N +L
Sbjct: 592 EILQLLLSKGSYPDVVTFSIFIDWLSKRGR---LRQAGELLETMLRAGLVPDTVTYNTLL 648

Query: 463 NGLLLIGNQGLAKEILRLQSRCGRLP 488
            G         A ++  +  +CG  P
Sbjct: 649 KGFCDASRTEDAVDLFEVMRQCGCEP 674



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 173/349 (49%), Gaps = 4/349 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  +D+  +  +      L+  M      P   ++  +      A K    V +   M
Sbjct: 362 TYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQM 421

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRT 223
             + C   + +FNTI+D +CK  +V+ AY LF + +      ++++YN + +G C  +R 
Sbjct: 422 LSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRF 481

Query: 224 NKALEVLKEMV-DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
           ++A  +L+EM   +G +P++ TYN V+ G  ++ +++ A++ FL+M       D VTY+ 
Sbjct: 482 DQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSI 541

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++        +  A NV + M+  G  P   TY  +I   CK  +++ A+ + + ++ KG
Sbjct: 542 VISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKG 601

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
             P+  T+++ I  L   G + +A E +  M      P+  TYN L++ FCDA   E  +
Sbjct: 602 SYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAV 661

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
           +LFE M    C P+  TY  L+  +  +K   DLL   ++   MVD GF
Sbjct: 662 DLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLL--AEVSKSMVDTGF 708


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  201 bits (512), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 116/386 (30%), Positives = 196/386 (50%), Gaps = 4/386 (1%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           ++F+  I    R    R    ++  M S  L P +KTF  + + ++  G  + A++I   
Sbjct: 212 TTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQ 271

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKR 222
           M   GC  S  + N ++   CKE ++E+  +       + F+ D  ++N + NG C +  
Sbjct: 272 MVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGH 331

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
              ALE+L  M+  G +P++ TYN ++ G  + G++EEA     +M  R    + VTY T
Sbjct: 332 VKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNT 391

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++       +++ A  +   + + G+LP V T+N++IQ LC  ++   A+ +FEEM  KG
Sbjct: 392 LISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKG 451

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
             P+  TYN++I  LC  G +E AL  +  M+   C  NV TYN LI  FC    IE   
Sbjct: 452 CHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAE 511

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           E+F++M       N+ TYN LI  +   ++ ++   A +L+ +M+  G  P KFT+N +L
Sbjct: 512 EIFDEMELQGISRNVVTYNTLIDGLCKNRRVEE---AAQLMDQMLMEGLKPDKFTYNSLL 568

Query: 463 NGLLLIGNQGLAKEILRLQSRCGRLP 488
                 G+   A +I++  +  G  P
Sbjct: 569 TYFCRAGDIKKAADIVQTMTSNGCEP 594



 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 110/341 (32%), Positives = 175/341 (51%), Gaps = 9/341 (2%)

Query: 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISY 210
           G+ + AV+I   M       +  ++NT++  LCKE +VE+A  L +V   K    DV ++
Sbjct: 365 GEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTF 424

Query: 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
           N +  G CL      A+E+ +EM  +G +P+  TYN+++      G++EEA     EM+ 
Sbjct: 425 NSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMES 484

Query: 271 RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
             C  +VVTY T++ GF     I+ A  +FD M   G+  +V TYN +I  LCK   VE 
Sbjct: 485 SGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEE 544

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           A  + ++M+ +G  P+  TYN ++   C  G++++A + V  M  + CEP+  TY  LI 
Sbjct: 545 AAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLIL 604

Query: 391 YFCDAGEIERGLELFE--KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
               AG +E    L    ++   V  P   TYN +I ++F  K++ +   A +L  EM++
Sbjct: 605 GLSKAGRVELASRLLRTVQLKGMVLAPQ--TYNPVIKALFREKRTSE---AVRLFREMME 659

Query: 449 RGFMPRKFTFNRVLNGLLLIGNQ-GLAKEILRLQSRCGRLP 488
           +G  P   T+  V  GL   G   G A + L   +  G LP
Sbjct: 660 KGDPPDAVTYKVVFRGLCSGGGPIGEAVDFLVEMTDKGFLP 700



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 127/476 (26%), Positives = 222/476 (46%), Gaps = 18/476 (3%)

Query: 24  PLTTTSPAPLPPAAADPAALASLI-LTST---DPRTLTQTLHCPSLHWTPQLVDQIIKRL 79
           P T T P P   +A +    + LI  TST   D + ++ +    S   T QL      + 
Sbjct: 15  PHTLTQPPPTLSSAHNCKPFSKLISFTSTHHHDQQAVSPSFSTLSPSPTTQLPQNFTPKQ 74

Query: 80  WNHALK-------ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSL 132
              AL+        L   +  S  P +  S   ++  +    +   + ++  ++  MK  
Sbjct: 75  LRDALRRQSDEDSILDLLDWASKQPNFVPSSVIYEEVLRKLGKDGSFGSMRRVLQEMKHT 134

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH-GCRQSLNSFNTILDLLCKEKKVE- 190
                + TF I+ E Y      D AV +   M E  G +    ++N +L++L    K++ 
Sbjct: 135 GCEIRRGTFLILIESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDGNKLKL 194

Query: 191 -KAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL 249
            +  N   V RG  K DV ++N++    C   +   A+ +++EM   GL+P+  T+  ++
Sbjct: 195 VEIVNSRMVSRG-IKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLM 253

Query: 250 KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
           +G+   G +  A R   +M    C    VT   +VHG+   G I+   +  D M N G  
Sbjct: 254 QGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFR 313

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           P   T+N+++  LC+   V++A+ + + M+ +G+ P+  TYN +I GLC  GE+E A+E 
Sbjct: 314 PDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEI 373

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
           + +M   +  PN  TYN LI   C   ++E   EL   + S   LP++ T+N LI  + +
Sbjct: 374 LNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCL 433

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
              +++  +A +L  EM  +G  P +FT+N +++ L   G    A  +L+     G
Sbjct: 434 ---TNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSG 486



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 152/332 (45%), Gaps = 41/332 (12%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  I       ++R    L   MK+    P + T+ ++ +   S G+ + A+ +   M
Sbjct: 423 TFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEM 482

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
              GC +++ ++NT++D  CK K++E+A  +F     +    +V++YN + +G C  +R 
Sbjct: 483 ESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRV 542

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A +++ +M+  GL P+  TYN +L  + RAG I++A      M    CE D VTY T+
Sbjct: 543 EEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTL 602

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV---- 339
           + G    G ++ A  +   +   G++ +  TYN +I+ L ++     A+ +F EM+    
Sbjct: 603 ILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGD 662

Query: 340 --------------------------------GKGYMPNSTTYNVVIRGLCHTGEMERAL 367
                                            KG++P+ +++ ++  GLC     +  +
Sbjct: 663 PPDAVTYKVVFRGLCSGGGPIGEAVDFLVEMTDKGFLPDFSSFLMLAEGLCALSMEDTLI 722

Query: 368 EFVGRMKDDECEPNVQTYNIL----IRYFCDA 395
           + V R+       + +   I+    IR F DA
Sbjct: 723 KLVNRVMKQANFSDSEVSMIMGFLKIRKFQDA 754



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 119/253 (47%), Gaps = 4/253 (1%)

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           P+   Y  VL+   + G      R   EMK   CEI   T+  ++  +        A  V
Sbjct: 103 PSSVIYEEVLRKLGKDGSFGSMRRVLQEMKHTGCEIRRGTFLILIESYAKFELFDEAVAV 162

Query: 300 FDGMVNG-GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
            D M    G+     TYN ++ VL   + ++   +V   MV +G  P+ TT+N++I+ LC
Sbjct: 163 VDIMEEEFGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALC 222

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLD 418
              ++  A+  +  M      P+ +T+  L++ F + G +   L + E+M +  C  +  
Sbjct: 223 RAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNV 282

Query: 419 TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           T N+L+       + +++L     + EM + GF P +FTFN ++NGL  IG+   A EIL
Sbjct: 283 TVNVLVHGYCKEGRIEEVL---SFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEIL 339

Query: 479 RLQSRCGRLPRQF 491
            +  + G  P  F
Sbjct: 340 DVMLQEGFDPDIF 352


>gi|356499253|ref|XP_003518456.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Glycine max]
          Length = 510

 Score =  201 bits (512), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 135/451 (29%), Positives = 212/451 (47%), Gaps = 17/451 (3%)

Query: 30  PAPLPPAAADPAALASLILTSTDPRTLTQT-LHCPSLHWTPQLVDQIIKRLWNHALKALH 88
           P P P   +D   ++ L+L   +P   T++ L    +  TP L+   + RL NH+  AL 
Sbjct: 27  PPPSPRDESDAELISKLLLQHHNPFHATESPLQLHGITLTPTLLFHTLLRLKNHSKIALS 86

Query: 89  FFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRM-KSLSLGPTQKTFAIIAER 147
            F+     P    S SSF   ID  A++R +   W L+  M +   L PT  TF  +  R
Sbjct: 87  LFHYAKTLPNPPLSHSSFTLLIDTMAKVRQFDVAWQLIVEMDQRHHLTPTPSTFLTLIRR 146

Query: 148 YVSAGKADRAVKIFLSMHEHG-CRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKAD 206
            + AG   +AV+ F  +      + +   F  +LD LCK   V  A  +F   +  F   
Sbjct: 147 LICAGLTRQAVRAFHDIDAFSETKTTPQDFCVLLDTLCKYGHVRLAVEVFNKNKHTFPPT 206

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF-- 264
           V  Y V+  GWC + R   A   L EM+D+G+ PN+ TYN++L G  R   +    RF  
Sbjct: 207 VKMYTVLIYGWCKIGRIKTAQSFLNEMIDKGIEPNVVTYNVLLNGVCRKVSLHPEERFER 266

Query: 265 --------FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
                   F +M++   E DV +++ ++H +    + +   +    M   G+ P+V  Y 
Sbjct: 267 TIRNAEEVFDQMRESGIEPDVTSFSILLHVYSRAHKPQLVLDKLSLMKEKGICPNVVMYT 326

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
           ++I+ L     +E+A  +  EMV  G  P + TYN   +      + E AL    RMK+D
Sbjct: 327 SVIKCLASCGWLEDAERLLGEMVRDGVSPCAATYNCFFKEFRGRKDGESALRMFKRMKED 386

Query: 377 E-CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
             C P+  TY ILIR F     I+   E+++ M      P+LD Y +LI  +  R++  +
Sbjct: 387 GLCMPSSHTYVILIRMFLRLDMIKVVKEIWQDMKETGAGPDLDLYTVLIHGLCERQRWRE 446

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
              A    +EM++ GF+P K TF  +  GL+
Sbjct: 447 ---ACHYFVEMIENGFLPLKGTFESLYRGLI 474



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 89/212 (41%), Gaps = 2/212 (0%)

Query: 117 RDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSF 176
           R  R    +  +M+   + P   +F+I+   Y  A K    +     M E G   ++  +
Sbjct: 266 RTIRNAEEVFDQMRESGIEPDVTSFSILLHVYSRAHKPQLVLDKLSLMKEKGICPNVVMY 325

Query: 177 NTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235
            +++  L     +E A  L  ++ R        +YN     +   K    AL + K M +
Sbjct: 326 TSVIKCLASCGWLEDAERLLGEMVRDGVSPCAATYNCFFKEFRGRKDGESALRMFKRMKE 385

Query: 236 RGL-NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
            GL  P+  TY I+++ + R   I+     + +MK+     D+  YT ++HG       +
Sbjct: 386 DGLCMPSSHTYVILIRMFLRLDMIKVVKEIWQDMKETGAGPDLDLYTVLIHGLCERQRWR 445

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
            A + F  M+  G LP   T+ ++ + L + D
Sbjct: 446 EACHYFVEMIENGFLPLKGTFESLYRGLIQAD 477


>gi|115476116|ref|NP_001061654.1| Os08g0369200 [Oryza sativa Japonica Group]
 gi|113623623|dbj|BAF23568.1| Os08g0369200 [Oryza sativa Japonica Group]
 gi|125603197|gb|EAZ42522.1| hypothetical protein OsJ_27088 [Oryza sativa Japonica Group]
 gi|215740653|dbj|BAG97309.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 511

 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 139/463 (30%), Positives = 227/463 (49%), Gaps = 26/463 (5%)

Query: 26  TTTSPAPLPPAAADPAA--LASLILTSTDP----RTLTQTLHCPSLHWTPQLVDQIIKRL 79
           TTT    LPP    PAA  LA L+L   +P     +  Q L    +  T  L+ Q++ RL
Sbjct: 17  TTTHLLALPPVEPSPAADELARLLLAHHNPFHPAESPLQLLSGGGVSLTGDLLVQLLLRL 76

Query: 80  WNHALKALHFFNILSYHPTYAHSP---SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGP 136
              +  AL   +    HP  A S     ++D  +D   R R +   W LV    +     
Sbjct: 77  RGASKLALSLLHAARLHPPPAASSRAADAYDAVVDALGRARQFDAAWRLVVEAAADGAA- 135

Query: 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ-SLNSFNTILDLLCKEKKVEKAYNL 195
           T +TFA++A RYV+AG   +AV+ F  M     R+     F T+LD LCK K  + A  +
Sbjct: 136 TPRTFAVLARRYVAAGMTRQAVRAFDDMEAFVGREPDAAEFTTLLDTLCKYKYPKVAAEV 195

Query: 196 FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
           F   + K++ +   Y V+  GWC V R + A + LK+M+  G+ PN+ TYNI+L G  R 
Sbjct: 196 FNKRKYKYEPNEKMYTVLIYGWCKVNRNDMAQKFLKDMIYHGIEPNIVTYNILLNGICRH 255

Query: 256 GQIEEAWRF----------FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
             +   +RF            EM +R  E +V +Y+ I+H +    + +    +F  M  
Sbjct: 256 ASLHPDYRFDRTVRAAEDLLKEMHQRGIEPNVTSYSVILHVYSRAHKPELCLCMFRSMKE 315

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G+ P+VATY ++I+ L     +++A  + +EM  +G  P+  TYN   +      ++  
Sbjct: 316 RGICPTVATYTSVIKCLASCGRLDDAESLLDEMASEGVCPSPATYNCFFKEYRGRKDVNG 375

Query: 366 ALEFVGRMK--DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           AL+   +MK       P++ TYNIL+  F    + +  ++++  M      P+L++Y +L
Sbjct: 376 ALQLYNKMKAPGSPATPDIHTYNILLGMFIKLNQHDTVMQVWNDMCESTVGPDLNSYTLL 435

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
           +  +   KK  +   A +  +EM++RGF+P+K TF  +  GL+
Sbjct: 436 VHGLCDNKKWRE---ACQFFMEMIERGFLPQKITFETLYRGLI 475


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 128/420 (30%), Positives = 204/420 (48%), Gaps = 16/420 (3%)

Query: 77  KRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGP 136
           KRL + AL  LH        P       +++  ID   +  +      L   MKS+   P
Sbjct: 93  KRL-DQALAILHEMRDHGCEPNVV----TYNSLIDGLCKNNEPDRAQELFEHMKSVECSP 147

Query: 137 TQKTFAIIAERYVSAGKADRAVKIFLSM-----HEHGCRQSLN--SFNTILDLLCKEKKV 189
           +  T+  + +     GK +RA+ +F  M     H+   R S N  +++ ++D LCK  +V
Sbjct: 148 SMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRV 207

Query: 190 EKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
            +A  L +  + +    DVI+Y ++ +G C   +   A EVL+EM+D G  PNL TYN +
Sbjct: 208 SQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSL 267

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           L G  RA ++ +A     +M  R C  +VVTY T++ G   VG +K A  +   M++ G 
Sbjct: 268 LHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGG 327

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
            P +  YN +I  LCK D V+ +I +    V  G  P+  TY+ VI GLC +  ++ A  
Sbjct: 328 TPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACR 387

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
            +  +K   C P+V  Y+ LI   C AG+++   +L+E M    C  ++ TY+ LI  + 
Sbjct: 388 LLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLC 447

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
              + D+   A  LL  MV  G  P   T+N ++ GL  + +   A E++    R    P
Sbjct: 448 KAGRVDE---AHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAP 504



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 166/338 (49%), Gaps = 11/338 (3%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+A +   +   G+ D+A + F  M       ++   + ++D LCK K+   A   
Sbjct: 7   PDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRC 66

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F+  +G    AD + Y  + +G    KR ++AL +L EM D G  PN+ TYN ++ G  +
Sbjct: 67  FRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCK 126

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV-------NGG 307
             + + A   F  MK  +C   +VTY T++ G    G+++RA  +F  M+       +  
Sbjct: 127 NNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDR 186

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
             P+V TY+ +I  LCK + V  A+ + E M  +G  P+  TY +++ GLC   ++  A 
Sbjct: 187 CSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAW 246

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           E +  M D  C PN+ TYN L+   C A  +   L L   M    C PN+ TY  LI  +
Sbjct: 247 EVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGL 306

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
               +  D   A  +L +M+D+G  P    +N ++NGL
Sbjct: 307 CKVGRVKD---ACAMLADMIDKGGTPDLMIYNMLINGL 341



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 102/350 (29%), Positives = 176/350 (50%), Gaps = 11/350 (3%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           W ++  M      P   T+  +      A +   A+ +   M   GC  ++ ++ T++D 
Sbjct: 246 WEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDG 305

Query: 183 LCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           LCK  +V+ A  +      K    D++ YN++ NG C   + ++++ +L+  V  G+ P+
Sbjct: 306 LCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPD 365

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           + TY+ V+ G  R+ +++EA R  L +K R C  DV+ Y+T++ G    G++  A ++++
Sbjct: 366 VVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYE 425

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M   G    V TY+ +I  LCK   V+ A L+   MV  G  P++ TYN +I+GLC   
Sbjct: 426 VMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLN 485

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP----NL 417
            ++ A+E V  M+   C P+  TYNILI   C    ++  + L E+     C+      L
Sbjct: 486 HLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQ-AKARCVAAGGTAL 544

Query: 418 DT--YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           DT  Y+ LI  +    K+  +  A     EM+D G +P   T++ +L GL
Sbjct: 545 DTIAYSSLIDGLC---KAGRVAEALDYFQEMIDNGVIPDHITYSILLEGL 591



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 126/257 (49%), Gaps = 10/257 (3%)

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
            P++ TY  +L+G+ R G+I++A R F EM+ +    +V   + ++ G         A  
Sbjct: 6   QPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALR 65

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
            F  M   G++     Y A++  L K+  ++ A+ +  EM   G  PN  TYN +I GLC
Sbjct: 66  CFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLC 125

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-------GSG 411
              E +RA E    MK  EC P++ TYN L+      G++ER + LF++M          
Sbjct: 126 KNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDD 185

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
            C PN+ TY++LI  +    K++ +  A +LL  M  RG  P   T+  +++GL      
Sbjct: 186 RCSPNVITYSVLIDGLC---KANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKV 242

Query: 472 GLAKEILRLQSRCGRLP 488
             A E+LR     G +P
Sbjct: 243 AAAWEVLREMLDAGCVP 259



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/213 (33%), Positives = 109/213 (51%), Gaps = 10/213 (4%)

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
           C+ DV TY  ++ GF   GEI +A+  FD M +  ++P+V   + +I  LCK     +A+
Sbjct: 5   CQPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDAL 64

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
             F  M G G + ++  Y  ++ GL     +++AL  +  M+D  CEPNV TYN LI   
Sbjct: 65  RCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGL 124

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR--- 449
           C   E +R  ELFE M S  C P++ TYN L+  +F   ++  L  A  L  EM+DR   
Sbjct: 125 CKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLF---RTGKLERAMALFQEMLDRRSH 181

Query: 450 ----GFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
                  P   T++ +++GL        A E+L
Sbjct: 182 DMDDRCSPNVITYSVLIDGLCKANRVSQAVELL 214



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 116/223 (52%), Gaps = 9/223 (4%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           +KS    P    ++ + +    AGK D A  ++  M   GC   + +++T++D LCK  +
Sbjct: 392 VKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGR 451

Query: 189 VEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           V++A+ L  ++ R       ++YN +  G C +   ++A+E+++EM      P+  TYNI
Sbjct: 452 VDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNI 511

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKC------EIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           ++ G  R  +++ A    LE  K +C       +D + Y++++ G    G +  A + F 
Sbjct: 512 LIHGMCRMERVDSAV-VLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQ 570

Query: 302 GMVNGGVLPSVATYNAMIQVLCK-KDSVENAILVFEEMVGKGY 343
            M++ GV+P   TY+ +++ L K KD  E   LV ++MV  GY
Sbjct: 571 EMIDNGVIPDHITYSILLEGLKKSKDLHELRHLVLDQMVQLGY 613



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 73/149 (48%), Gaps = 6/149 (4%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+ RM  +   P+  T+  + +        D A+++   M    C  S  ++N ++  +C
Sbjct: 458 LLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMC 517

Query: 185 KEKKVEKAYNLFK------VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           + ++V+ A  L +      V  G    D I+Y+ + +G C   R  +AL+  +EM+D G+
Sbjct: 518 RMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGV 577

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
            P+  TY+I+L+G  ++  + E     L+
Sbjct: 578 IPDHITYSILLEGLKKSKDLHELRHLVLD 606


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  201 bits (511), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 186/368 (50%), Gaps = 4/368 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+ RM      P + T+  +  R   +G +  A+ +F  M E   + S+  ++ ++D LC
Sbjct: 226 LIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLC 285

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K+   + A +LF     K  KADV++Y+ +  G C   + +   ++L+EM+ R + P++ 
Sbjct: 286 KDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVV 345

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           T++ ++  + + G++ EA   + EM  R    D +TY +++ GF     +  A  +FD M
Sbjct: 346 TFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLM 405

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           V+ G  P + TY+ +I   CK   V++ + +F E+  KG +PN+ TYN ++ G C +G++
Sbjct: 406 VSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKL 465

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             A E    M      P+V TY IL+   CD GE+ + LE+FEKM        +  YNI+
Sbjct: 466 NAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNII 525

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I  M    K DD   A  L   + D+G  P   T+N ++ GL   G+   A  + R    
Sbjct: 526 IHGMCNASKVDD---AWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKE 582

Query: 484 CGRLPRQF 491
            G  P  F
Sbjct: 583 DGCTPDDF 590



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 161/312 (51%), Gaps = 4/312 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++  M   ++ P   TF+ + + +V  GK   A +++  M   G      ++N+++D  C
Sbjct: 331 MLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFC 390

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           KE  + +A  +F +   K  + D+++Y+++ N +C  KR +  + + +E+  +GL PN  
Sbjct: 391 KENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTI 450

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN ++ G+ ++G++  A   F EM  R     VVTY  ++ G    GE+ +A  +F+ M
Sbjct: 451 TYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKM 510

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
               +   +  YN +I  +C    V++A  +F  +  KG  P+  TYNV+I GLC  G +
Sbjct: 511 QKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSL 570

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI- 422
             A     +MK+D C P+  TYNILIR       +   +EL E+M   VC  + D+  I 
Sbjct: 571 SEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEM--KVCGFSADSSTIK 628

Query: 423 LISSMFVRKKSD 434
           ++  M   ++ D
Sbjct: 629 MVIDMLSDRRLD 640



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 109/404 (26%), Positives = 193/404 (47%), Gaps = 11/404 (2%)

Query: 81  NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKT 140
           N AL AL  F  +      A S   +   ID   +   +    +L + M+   +     T
Sbjct: 254 NSAL-ALDLFRKMEERNIKA-SVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVT 311

Query: 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--V 198
           ++ +     + GK D   K+   M        + +F+ ++D+  KE K+ +A  L+   +
Sbjct: 312 YSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMI 371

Query: 199 FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
            RG    D I+YN + +G+C     ++A ++   MV +G  P++ TY+I++  Y +A ++
Sbjct: 372 TRG-IAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRV 430

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           ++  R F E+  +    + +TY T+V GF   G++  A+ +F  MV+ GV PSV TY  +
Sbjct: 431 DDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGIL 490

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           +  LC    +  A+ +FE+M           YN++I G+C+  +++ A      + D   
Sbjct: 491 LDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGV 550

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
           +P+V TYN++I   C  G +     LF KM    C P+  TYNILI +         L+ 
Sbjct: 551 KPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHL---GGSGLIS 607

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           + +L+ EM   GF     T   V++   ++ ++ L K  L + S
Sbjct: 608 SVELIEEMKVCGFSADSSTIKMVID---MLSDRRLDKSFLDMLS 648



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/429 (25%), Positives = 195/429 (45%), Gaps = 13/429 (3%)

Query: 57  TQTLHCPS-----LHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAID 111
           T  LH  S     L +  +L + I+    N A+    F +++   P    +P  F+    
Sbjct: 52  TSLLHYSSITEAKLSYKERLRNGIVDIKVNDAIDL--FESMIQSRPL--PTPIDFNRLCS 107

Query: 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ 171
             AR + Y  V      M+   +     T  I+   Y    K   A  +     + G   
Sbjct: 108 AVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEP 167

Query: 172 SLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVL 230
              +F+T+++  C E +V +A  L  ++   K + D+++ + + NG CL  R ++AL ++
Sbjct: 168 DTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLI 227

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
             MV+ G  P+  TY  VL    ++G    A   F +M++R  +  VV Y+ ++      
Sbjct: 228 DRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKD 287

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           G    A ++F+ M   G+   V TY+++I  LC     ++   +  EM+G+  +P+  T+
Sbjct: 288 GSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTF 347

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           + +I      G++  A E    M      P+  TYN LI  FC    +    ++F+ M S
Sbjct: 348 SALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVS 407

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
             C P++ TY+ILI+S    K+ DD +   +L  E+  +G +P   T+N ++ G    G 
Sbjct: 408 KGCEPDIVTYSILINSYCKAKRVDDGM---RLFREISSKGLIPNTITYNTLVLGFCQSGK 464

Query: 471 QGLAKEILR 479
              AKE+ +
Sbjct: 465 LNAAKELFQ 473


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  201 bits (511), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 191/352 (54%), Gaps = 5/352 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           ++  ID   +++     + L   M S  + P   T++ +   +   GK   A+ +F  M 
Sbjct: 228 YNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMI 287

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTN 224
               +  + +FN +++  CK+ K+++   +F +  +   K + ++YN + +G+CLVK  N
Sbjct: 288 LENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVN 347

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           KA  +   M   G+NP++ +Y+I++ G+ +  + +EA   F EM ++    DVVTY++++
Sbjct: 348 KAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLI 407

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            G    G I  A  + D M + GV P++ TYN+++  LCK   V+ AI +  +   KG+ 
Sbjct: 408 DGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQ 467

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           P+ +TY+++I+GLC +G++E A +    +       +V  Y I+I+ FC  G     L L
Sbjct: 468 PDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALAL 527

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
             KM    C+P+  TY I+I S+F + ++D   +A KLL EM+ RG +P  F
Sbjct: 528 LSKMEDNGCIPDAKTYEIIILSLFKKDEND---MAEKLLREMIARG-LPLNF 575



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/438 (27%), Positives = 201/438 (45%), Gaps = 45/438 (10%)

Query: 63  PSLHWTPQLVDQIIKRLWNHALKALHF---------FNILSYHPTYA--HSPSSFDHAID 111
           P  H+ P+             LK  HF          N +SY  T    HS +  D A+ 
Sbjct: 18  PDSHFVPKKFQSF------QFLKNTHFNFIPYSSSKINFISYSSTSTTFHSNNDVDDAVS 71

Query: 112 LAARL----------------------RDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149
           L  RL                      + Y TV  L  +M+   + P      I+   + 
Sbjct: 72  LFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFC 131

Query: 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF--KVFRGKFKADV 207
             G    A  +F  + + G      +F T+   LC + ++++A+ LF  KV    F  D 
Sbjct: 132 QLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAF-LFHDKVVALGFHFDQ 190

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           ISY  + +G C V  T  AL++L+ +    + PN+  YN ++    +   + EA+  F E
Sbjct: 191 ISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSE 250

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M  +    DVVTY+ ++ GF ++G++K A ++F+ M+   + P V T+N ++   CK   
Sbjct: 251 MVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGK 310

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
           ++    VF+ M+ +G  PN  TYN ++ G C   E+ +A      M      P++Q+Y+I
Sbjct: 311 MKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSI 370

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           +I  FC   + +  + LF++M     +P++ TY+ LI  +    KS  +  A +L+ +M 
Sbjct: 371 MINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGL---SKSGRISYALQLVDQMH 427

Query: 448 DRGFMPRKFTFNRVLNGL 465
           DRG  P   T+N +L+ L
Sbjct: 428 DRGVPPNICTYNSILDAL 445



 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 189/347 (54%), Gaps = 7/347 (2%)

Query: 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK 197
           Q ++  +       G+   A+ +   +  +  + ++  +NTI+D +CK K V +A++LF 
Sbjct: 190 QISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFS 249

Query: 198 VFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256
               K    DV++Y+ + +G+C++ +   A+++  +M+   + P++ T+NI++  + + G
Sbjct: 250 EMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDG 309

Query: 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
           +++E    F  M K+  + + VTY +++ G+ +V E+ +A+++F+ M  GGV P + +Y+
Sbjct: 310 KMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYS 369

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
            MI   CK    + A+ +F+EM  K  +P+  TY+ +I GL  +G +  AL+ V +M D 
Sbjct: 370 IMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDR 429

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
              PN+ TYN ++   C   ++++ + L  K       P++ TY+ILI  +    K +D 
Sbjct: 430 GVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLED- 488

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
             A K+  +++ +G+    + +  ++ G  +   +GL  E L L S+
Sbjct: 489 --ARKVFEDLLVKGYNLDVYAYTIMIQGFCV---EGLFNEALALLSK 530



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 182/363 (50%), Gaps = 11/363 (3%)

Query: 63  PSLHWTPQLVDQIIK-RLWNHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDY 119
           P++     ++D + K +L N A      F++ S   +   SP   ++   I     L   
Sbjct: 223 PNVVMYNTIIDSMCKVKLVNEA------FDLFSEMVSKGISPDVVTYSALISGFCILGKL 276

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
           +    L ++M   ++ P   TF I+   +   GK      +F  M + G + +  ++N++
Sbjct: 277 KDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSL 336

Query: 180 LDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           +D  C  K+V KA ++F    +G    D+ SY+++ NG+C +K+ ++A+ + KEM  + +
Sbjct: 337 MDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNI 396

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
            P++ TY+ ++ G  ++G+I  A +   +M  R    ++ TY +I+       ++ +A  
Sbjct: 397 IPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIA 456

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
           +     + G  P ++TY+ +I+ LC+   +E+A  VFE+++ KGY  +   Y ++I+G C
Sbjct: 457 LLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFC 516

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGVCLPNL 417
             G    AL  + +M+D+ C P+ +TY I+I       E +   +L  +M   G+ L   
Sbjct: 517 VEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGLPLNFY 576

Query: 418 DTY 420
           D Y
Sbjct: 577 DLY 579



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 128/286 (44%), Gaps = 3/286 (1%)

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
           K + ISY+  +  +      + A+ +   ++ R   P    +N +L    ++        
Sbjct: 47  KINFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLY 106

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
              +M+ R  + ++V    +++ F  +G I  A +VF  ++  G +P   T+  + + LC
Sbjct: 107 LSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLC 166

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
            K  ++ A L  +++V  G+  +  +Y  +I GLC  GE   AL+ + R+  +  +PNV 
Sbjct: 167 LKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVV 226

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
            YN +I   C    +    +LF +M S    P++ TY+ LIS   +  K  D   A  L 
Sbjct: 227 MYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKD---AIDLF 283

Query: 444 IEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPR 489
            +M+     P  +TFN ++N     G     K +  +  + G  P 
Sbjct: 284 NKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPN 329


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  201 bits (510), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 186/368 (50%), Gaps = 4/368 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+ RM      P + T+  +  R   +G +  A+ +F  M E   + S+  ++ ++D LC
Sbjct: 197 LIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLC 256

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K+   + A +LF     K  KADV++Y+ +  G C   + +   ++L+EM+ R + P++ 
Sbjct: 257 KDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVV 316

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           T++ ++  + + G++ EA   + EM  R    D +TY +++ GF     +  A  +FD M
Sbjct: 317 TFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLM 376

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           V+ G  P + TY+ +I   CK   V++ + +F E+  KG +PN+ TYN ++ G C +G++
Sbjct: 377 VSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKL 436

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             A E    M      P+V TY IL+   CD GE+ + LE+FEKM        +  YNI+
Sbjct: 437 NAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNII 496

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I  M    K DD   A  L   + D+G  P   T+N ++ GL   G+   A  + R    
Sbjct: 497 IHGMCNASKVDD---AWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKE 553

Query: 484 CGRLPRQF 491
            G  P  F
Sbjct: 554 DGCTPDDF 561



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 161/312 (51%), Gaps = 4/312 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++  M   ++ P   TF+ + + +V  GK   A +++  M   G      ++N+++D  C
Sbjct: 302 MLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFC 361

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           KE  + +A  +F +   K  + D+++Y+++ N +C  KR +  + + +E+  +GL PN  
Sbjct: 362 KENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTI 421

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN ++ G+ ++G++  A   F EM  R     VVTY  ++ G    GE+ +A  +F+ M
Sbjct: 422 TYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKM 481

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
               +   +  YN +I  +C    V++A  +F  +  KG  P+  TYNV+I GLC  G +
Sbjct: 482 QKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSL 541

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI- 422
             A     +MK+D C P+  TYNILIR       +   +EL E+M   VC  + D+  I 
Sbjct: 542 SEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEM--KVCGFSADSSTIK 599

Query: 423 LISSMFVRKKSD 434
           ++  M   ++ D
Sbjct: 600 MVIDMLSDRRLD 611



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 109/404 (26%), Positives = 193/404 (47%), Gaps = 11/404 (2%)

Query: 81  NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKT 140
           N AL AL  F  +      A S   +   ID   +   +    +L + M+   +     T
Sbjct: 225 NSAL-ALDLFRKMEERNIKA-SVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVT 282

Query: 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--V 198
           ++ +     + GK D   K+   M        + +F+ ++D+  KE K+ +A  L+   +
Sbjct: 283 YSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMI 342

Query: 199 FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
            RG    D I+YN + +G+C     ++A ++   MV +G  P++ TY+I++  Y +A ++
Sbjct: 343 TRG-IAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRV 401

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           ++  R F E+  +    + +TY T+V GF   G++  A+ +F  MV+ GV PSV TY  +
Sbjct: 402 DDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGIL 461

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           +  LC    +  A+ +FE+M           YN++I G+C+  +++ A      + D   
Sbjct: 462 LDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGV 521

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
           +P+V TYN++I   C  G +     LF KM    C P+  TYNILI +         L+ 
Sbjct: 522 KPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHL---GGSGLIS 578

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           + +L+ EM   GF     T   V++   ++ ++ L K  L + S
Sbjct: 579 SVELIEEMKVCGFSADSSTIKMVID---MLSDRRLDKSFLDMLS 619



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/429 (25%), Positives = 195/429 (45%), Gaps = 13/429 (3%)

Query: 57  TQTLHCPS-----LHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAID 111
           T  LH  S     L +  +L + I+    N A+    F +++   P    +P  F+    
Sbjct: 23  TSLLHYSSITEAKLSYKERLRNGIVDIKVNDAIDL--FESMIQSRPL--PTPIDFNRLCS 78

Query: 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ 171
             AR + Y  V      M+   +     T  I+   Y    K   A  +     + G   
Sbjct: 79  AVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEP 138

Query: 172 SLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVL 230
              +F+T+++  C E +V +A  L  ++   K + D+++ + + NG CL  R ++AL ++
Sbjct: 139 DTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLI 198

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
             MV+ G  P+  TY  VL    ++G    A   F +M++R  +  VV Y+ ++      
Sbjct: 199 DRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKD 258

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           G    A ++F+ M   G+   V TY+++I  LC     ++   +  EM+G+  +P+  T+
Sbjct: 259 GSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTF 318

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           + +I      G++  A E    M      P+  TYN LI  FC    +    ++F+ M S
Sbjct: 319 SALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVS 378

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
             C P++ TY+ILI+S    K+ DD +   +L  E+  +G +P   T+N ++ G    G 
Sbjct: 379 KGCEPDIVTYSILINSYCKAKRVDDGM---RLFREISSKGLIPNTITYNTLVLGFCQSGK 435

Query: 471 QGLAKEILR 479
              AKE+ +
Sbjct: 436 LNAAKELFQ 444


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 109/348 (31%), Positives = 190/348 (54%), Gaps = 5/348 (1%)

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
           R  + L  +M    + P    + I+ + Y   G+ D A +++  M   G   S+ ++N++
Sbjct: 25  RDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVGLEPSIYTYNSL 84

Query: 180 LDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVL-KEMVDRG 237
           L+  CKE K+++A  LFK    K F+ DV++Y+ I +G C   +  +ALE+L  +M++RG
Sbjct: 85  LNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERG 144

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
            + N   YN ++ G  +   IE A++   EM  +    D +TY TI+ G   +G++  A+
Sbjct: 145 CSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAK 204

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
             FD M + G  P V  YN ++  L K+   + A+ +F++++ KGYMP++ TYN ++ GL
Sbjct: 205 QFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGL 264

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
                M+ A E   +M    C PN  TY+I++   C A +++   ++ E+M     +P++
Sbjct: 265 ARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDV 324

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            TYNIL+  +    K++ +  A +L   MVD G  P   +++ VLNGL
Sbjct: 325 VTYNILLDGLC---KTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGL 369



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 107/366 (29%), Positives = 187/366 (51%), Gaps = 5/366 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L   M S+ L P+  T+  +   +    K   A+++F +M E G    + +++TI+  LC
Sbjct: 65  LYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLC 124

Query: 185 KEKKVEKAYNLF--KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           K  KV +A  +   K+      A+ ++YN + NG C  +   +A ++L+EM  +G  P+ 
Sbjct: 125 KTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDN 184

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TYN +L G  R G++ EA +FF  M  R    DVV Y  ++      G+   A  +F  
Sbjct: 185 ITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKD 244

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           ++  G +P   TYN+++  L +K +++ A  +F++MV  G  PN  TY++V+ G C   +
Sbjct: 245 VIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKK 304

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           ++ A + +  M      P+V TYNIL+   C    +++  ELF  M    C P++ +Y++
Sbjct: 305 VDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSV 364

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           +++ +    K  D  V   L   M++R  +P   TFN +++GL   G    AK++L   +
Sbjct: 365 VLNGLCKTNKVHDARV---LFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMT 421

Query: 483 RCGRLP 488
             G  P
Sbjct: 422 CSGCAP 427



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 97/322 (30%), Positives = 168/322 (52%), Gaps = 5/322 (1%)

Query: 169 CRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKAL 227
           C  +  +F  +L   CK+ K+   Y LF ++       D I YN++ +G+    R ++A 
Sbjct: 4   CSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEAN 63

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
            + +EMV  GL P++ TYN +L  + +  +++EA   F  M ++  E DVVTY+TI+ G 
Sbjct: 64  RLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGL 123

Query: 288 GVVGEIKRA-RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
              G++  A   +F  M+  G   +   YNA+I  LCK +++E A  + EEM  KGY+P+
Sbjct: 124 CKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPD 183

Query: 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
           + TYN ++ GLC  G++  A +F   M      P+V  YN L+      G+ +  ++LF+
Sbjct: 184 NITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFK 243

Query: 407 KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
            + +   +P+  TYN ++  +  +   D+   A ++  +MV  G  P   T++ VL+G  
Sbjct: 244 DVIAKGYMPDTVTYNSILLGLARKSNMDE---AEEMFKKMVASGCAPNGATYSIVLSGHC 300

Query: 467 LIGNQGLAKEILRLQSRCGRLP 488
                  A ++L   S+ G +P
Sbjct: 301 RAKKVDDAHKVLEEMSKIGAVP 322



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 176/374 (47%), Gaps = 40/374 (10%)

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK-IFLSMHEHGCRQSLNSFNT 178
           +    L   M      P   T++ I       GK   A++ +F  M E GC  +  ++N 
Sbjct: 95  KEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNA 154

Query: 179 ILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           +++ LCK++ +E+AY L +    K +  D I+YN I +G C + + ++A +    M  RG
Sbjct: 155 LINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRG 214

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
            +P++  YN +L   ++ G+ +EA + F ++  +    D VTY +I+ G      +  A 
Sbjct: 215 YSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAE 274

Query: 298 NVFDGMV------NG-----------------------------GVLPSVATYNAMIQVL 322
            +F  MV      NG                             G +P V TYN ++  L
Sbjct: 275 EMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGL 334

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
           CK + V+ A  +F  MV  G  P+  +Y+VV+ GLC T ++  A     RM + +  P+V
Sbjct: 335 CKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDV 394

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
            T+NIL+   C AG+++   +L ++M    C P+   YN L++ +   +K    + A +L
Sbjct: 395 VTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGL---RKQGRHIQADRL 451

Query: 443 LIEMVDRGFMPRKF 456
              M ++GF+   F
Sbjct: 452 TQAMKEKGFLSDCF 465



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 141/286 (49%), Gaps = 33/286 (11%)

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
           R  +PN  T+ +VLK + + G++ + ++ F +M       D + Y  ++ G+   G +  
Sbjct: 2   RECSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDE 61

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
           A  +++ MV+ G+ PS+ TYN+++   CK+  ++ A+ +F+ M  KG+ P+  TY+ +I 
Sbjct: 62  ANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIIS 121

Query: 356 GLCHTGEMERALEFV-GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
           GLC TG++  ALE +  +M +  C  N   YN LI   C    IER  +L E+M S   +
Sbjct: 122 GLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYV 181

Query: 415 PNLDTYNILIS----------------SMFVRKKSDDLLV----------------AGKL 442
           P+  TYN ++S                SM  R  S D++                 A KL
Sbjct: 182 PDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKL 241

Query: 443 LIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             +++ +G+MP   T+N +L GL    N   A+E+ +     G  P
Sbjct: 242 FKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAP 287


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 133/498 (26%), Positives = 235/498 (47%), Gaps = 47/498 (9%)

Query: 31  APLPPAAADPAALASLILTSTDPRTLT--QTLHCPS--LHWTPQLVDQIIKRLWNHALKA 86
            P+P AA     + +L       + L   +++ C    + WT  ++D + K   N   +A
Sbjct: 89  GPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEKNVITWTI-MIDGLCK--ANRLPEA 145

Query: 87  LHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAE 146
             +F  +    T  +   +++  I+   ++      + L+  MK   L P   T++ +  
Sbjct: 146 TTYFAKMKKKGTVPNE-WTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIH 204

Query: 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKA 205
            +    K D A K+F  M E+GC  +L ++NT+L  LC+   +++AY L    R +  + 
Sbjct: 205 GFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQP 264

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           D  SY+ +  G C   + + AL+V ++  +    P++  Y+ ++ G  +AG+++EA + F
Sbjct: 265 DKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLF 324

Query: 266 LEMKKRKCEIDVVT-----------------------------------YTTIVHGFGVV 290
            +M++  CE DVVT                                   Y++++ G    
Sbjct: 325 EKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKT 384

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           G+++ A+ VF  M+  G+ P+V TYN++I   C  + V++A+L+ EEM   G +P+  TY
Sbjct: 385 GQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITY 444

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           N +I GLC TG    A    G MK   C P+V TY+ LI  FC    I+    LF+ M  
Sbjct: 445 NTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLK 504

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
              LP++ T++ L+         DD   A +LL EMV     P  +T+  +++G   +G 
Sbjct: 505 QAVLPDVVTFSTLVEGYCNAGLVDD---AERLLEEMVASDCSPDVYTYTSLVDGFCKVGR 561

Query: 471 QGLAKEILRLQSRCGRLP 488
              A+ +L+  ++ G  P
Sbjct: 562 MVEARRVLKRMAKRGCQP 579



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 200/394 (50%), Gaps = 5/394 (1%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           AL FF+  S    + H+  +++   +   R R       ++       + P   T+A++ 
Sbjct: 7   ALRFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVI 66

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA 205
           +    +G  D+A ++   M E G       +N ++  LCK +   KA + F+    + + 
Sbjct: 67  QGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSM--ECEK 124

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           +VI++ ++ +G C   R  +A     +M  +G  PN  TYN+++ G+ +  ++  A+   
Sbjct: 125 NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLL 184

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
            EMK+     +VVTY+T++HGF    ++  A  +F  MV  G +P++ TYN ++  LC+ 
Sbjct: 185 KEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRN 244

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
             ++ A  + +EM  +G  P+  +Y+ ++ GLC TG+++ AL+      + +C P+V  Y
Sbjct: 245 GLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAY 304

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           + LI   C AG ++   +LFEKM    C P++ T+  L+  +    K D L  A ++L  
Sbjct: 305 STLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLC---KGDRLQEAQQVLET 361

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           M DR   P   T++ +++GL   G    A+E+ +
Sbjct: 362 MEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFK 395



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 116/370 (31%), Positives = 189/370 (51%), Gaps = 9/370 (2%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L  +M+  S  P   TF  + +      +   A ++  +M +  C  ++ ++++++D LC
Sbjct: 323 LFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLC 382

Query: 185 KEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           K  +V  A  +FK  + RG  + +V++YN + +G+C+    + AL +++EM   G  P++
Sbjct: 383 KTGQVRDAQEVFKRMIVRG-IEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDI 441

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TYN ++ G  + G+  EA R F +MK + C  DV+TY+ ++ GF  +  I  AR +FD 
Sbjct: 442 ITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDD 501

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M+   VLP V T++ +++  C    V++A  + EEMV     P+  TY  ++ G C  G 
Sbjct: 502 MLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGR 561

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYN 421
           M  A   + RM    C+PNV TY  LI  FC AG+      L E+M G+GV  PN+ TY 
Sbjct: 562 MVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGV-QPNVITYR 620

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMV-DRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
            LI        + DL  A K+L  +  D       F +  +++GL   G    A E+L  
Sbjct: 621 SLIGGFC---GTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEA 677

Query: 481 QSRCGRLPRQ 490
             + G  PR 
Sbjct: 678 IKQSGTPPRH 687



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 114/381 (29%), Positives = 184/381 (48%), Gaps = 10/381 (2%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   ID   +    R    +  RM    + P   T+  +   +      D A+ +   M
Sbjct: 373 TYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEM 432

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF-KADVISYNVIANGWCLVKRT 223
              GC   + ++NT++D LCK  +  +A  LF   + KF   DVI+Y+ +  G+C ++R 
Sbjct: 433 TATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERI 492

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A  +  +M+ + + P++ T++ +++GY  AG +++A R   EM    C  DV TYT++
Sbjct: 493 DMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSL 552

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           V GF  VG +  AR V   M   G  P+V TY A+I   C+      A  + EEMVG G 
Sbjct: 553 VDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGV 612

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE-CEPNVQTYNILIRYFCDAGEIERGL 402
            PN  TY  +I G C TG++E A + + R++ DE C+ ++  Y +++   C  G +   L
Sbjct: 613 QPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAAL 672

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM-VDRGFMPRKFTFNRV 461
           EL E +      P  D Y  LI  +   K   +L  A ++L EM + R   P    +  V
Sbjct: 673 ELLEAIKQSGTPPRHDIYVALIRGLCQGK---ELGKAMEVLEEMTLSRKSRPNAEAYEAV 729

Query: 462 LNGLLLIGNQ----GLAKEIL 478
           +  L   G       LA E+L
Sbjct: 730 IQELAREGRHEEANALADELL 750



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 118/256 (46%), Gaps = 6/256 (2%)

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
           +G + N+ TYN + +   RA +I+E               +V TY  ++ G    G++ +
Sbjct: 18  QGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLDK 77

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
           A  + + M   G +P  A YN +I  LCK  +   A+  F  M  +    N  T+ ++I 
Sbjct: 78  ACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECE---KNVITWTIMID 134

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
           GLC    +  A  +  +MK     PN  TYN+LI  FC   ++ R   L ++M      P
Sbjct: 135 GLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAP 194

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
           N+ TY+ +I     + K D    A KL  +MV+ G MP   T+N +L+GL   G    A 
Sbjct: 195 NVVTYSTVIHGFCRQTKVD---TAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAY 251

Query: 476 EILRLQSRCGRLPRQF 491
           E+L      G  P +F
Sbjct: 252 ELLDEMRERGLQPDKF 267


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 116/389 (29%), Positives = 189/389 (48%), Gaps = 39/389 (10%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   ++  +     ++G  + AV +F  M ++GC+ ++ ++NTI+D LCK++ V  A + 
Sbjct: 196 PDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDF 255

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
                G+    D I+YN I +G C + + N+A  + K M   G  P++ TYNI++   ++
Sbjct: 256 LSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYK 315

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
              + +A  F  EM  +    DVVTYTTI+HG   +G++  A  +F  M   G  P V  
Sbjct: 316 DRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVA 375

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL----EFV 370
           YN +I  LCK   V +A+    EMV +G  PN+ TY+ ++ G C+ G+++ A     E V
Sbjct: 376 YNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMV 435

Query: 371 GR-------------------------------MKDDECEPNVQTYNILIRYFCDAGEIE 399
           GR                               M +   EPN+ TYN L+  +C   ++ 
Sbjct: 436 GRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMN 495

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
              ++FE M    C P+L +YNILI+     ++ D    A  LL +M  +   P   T+N
Sbjct: 496 EARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDK---AKALLTQMSVKKLTPNTVTYN 552

Query: 460 RVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            ++ GL  +G    A+E+ +     G LP
Sbjct: 553 TIMKGLCYVGRLLDAQELFKKMCSSGMLP 581



 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 132/428 (30%), Positives = 210/428 (49%), Gaps = 9/428 (2%)

Query: 63  PSLHWTPQLVDQIIK-RLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRT 121
           P++     ++D + K RL N A+  L    +    P  A + +S  H +    +L +   
Sbjct: 231 PNVVTYNTIIDSLCKDRLVNDAMDFLSEM-VGRGIPPDAITYNSIVHGLCCLGQLNE--- 286

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
              L  RM+     P   T+ II +        + A      M + G    + ++ TIL 
Sbjct: 287 ATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILH 346

Query: 182 LLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
            LC   ++ +A  LFK    K  K DV++YN I +  C  +  N A+E L EMVDRG+ P
Sbjct: 347 GLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPP 406

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           N  TY+ +L G+   GQ++EA + F EM  R    + +T++ +V G    G +  AR VF
Sbjct: 407 NAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVF 466

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           + M   GV P++ TYNA++   C +  +  A  VFE MVGKG  P+  +YN++I G C++
Sbjct: 467 ETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNS 526

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
             M++A   + +M   +  PN  TYN +++  C  G +    ELF+KM S   LP L TY
Sbjct: 527 RRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTY 586

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           +IL++ +      D+ L   KL   M ++   P    +  ++ G+ + G   +AK +   
Sbjct: 587 SILLNGLCKHGHLDEAL---KLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSK 643

Query: 481 QSRCGRLP 488
            S  G  P
Sbjct: 644 LSADGIQP 651



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 112/379 (29%), Positives = 183/379 (48%), Gaps = 4/379 (1%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
           A+++ Y TV  L ++M    +  T  +  I+          D AV ++  M + G +  +
Sbjct: 104 AKMKQYSTVVYLCNQMDLFGVTHTVYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDV 163

Query: 174 NSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
            +F T+++ +C E K++ A  L+ ++ R   + DVISYN + NG C    TN A+ V K+
Sbjct: 164 ITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKK 223

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M   G  PN+ TYN ++    +   + +A  F  EM  R    D +TY +IVHG   +G+
Sbjct: 224 MEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQ 283

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           +  A  +F  M   G  P V TYN +I  L K   V +A     EMV +G  P+  TY  
Sbjct: 284 LNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTT 343

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           ++ GLC+ G++  A+    +M+   C+P+V  YN +I   C    +   +E   +M    
Sbjct: 344 ILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRG 403

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
             PN  TY+ ++       + D+   A +L  EMV R  MP   TF+ +++GL   G   
Sbjct: 404 IPPNAVTYSTILHGFCNLGQLDE---ATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVS 460

Query: 473 LAKEILRLQSRCGRLPRQF 491
            A+ +    +  G  P  +
Sbjct: 461 EARWVFETMTEKGVEPNIY 479



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 159/304 (52%), Gaps = 1/304 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   + R        +  M    + P   T++ I   + + G+ D A ++F  M
Sbjct: 375 AYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEM 434

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
                  +  +F+ ++D LC+E  V +A  +F+    K  + ++ +YN + NG+CL  + 
Sbjct: 435 VGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKM 494

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           N+A +V + MV +G  P+L +YNI++ GY  + ++++A     +M  +K   + VTY TI
Sbjct: 495 NEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTI 554

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G   VG +  A+ +F  M + G+LP++ TY+ ++  LCK   ++ A+ +F+ M  K  
Sbjct: 555 MKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKL 614

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+   Y ++I G+   G++E A     ++  D  +P  +TYN++I+     G  +   E
Sbjct: 615 EPDIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYE 674

Query: 404 LFEK 407
           LF K
Sbjct: 675 LFRK 678



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 172/368 (46%), Gaps = 38/368 (10%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   + R        +  M    + P   T+  I       G+ + A+++F  M
Sbjct: 305 TYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKM 364

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKR 222
            + GC+  + ++NTI+D LCK++ V  A       V RG    + ++Y+ I +G+C + +
Sbjct: 365 EQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRG-IPPNAVTYSTILHGFCNLGQ 423

Query: 223 TNKALEVLKEMVDR-----------------------------------GLNPNLTTYNI 247
            ++A ++ KEMV R                                   G+ PN+ TYN 
Sbjct: 424 LDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNA 483

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ GY    ++ EA + F  M  + C  D+ +Y  +++G+     + +A+ +   M    
Sbjct: 484 LMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKK 543

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           + P+  TYN +++ LC    + +A  +F++M   G +P   TY++++ GLC  G ++ AL
Sbjct: 544 LTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEAL 603

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           +    MK+ + EP++  Y ILI      G++E    LF K+ +    P   TYN++I  +
Sbjct: 604 KLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGL 663

Query: 428 FVRKKSDD 435
                SD+
Sbjct: 664 LKEGLSDE 671



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 146/295 (49%), Gaps = 3/295 (1%)

Query: 194 NLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
           + +++ R   +  ++ +         +K+ +  + +  +M   G+   + + NI++    
Sbjct: 80  SFYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNILINCLC 139

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
           R   ++ A   + +M K   + DV+T+TT+++G    G+IK A  +++ MV  G  P V 
Sbjct: 140 RLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVI 199

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           +YN +I  LC   +   A+ VF++M   G  PN  TYN +I  LC    +  A++F+  M
Sbjct: 200 SYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEM 259

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
                 P+  TYN ++   C  G++     LF++M    C P++ TYNI+I S++  +  
Sbjct: 260 VGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLV 319

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           +D   A   L EMVD+G  P   T+  +L+GL  +G    A  + +   + G  P
Sbjct: 320 ND---AADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKP 371



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 125/251 (49%), Gaps = 1/251 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L   M   ++ P   TF+I+ +     G    A  +F +M E G   ++ ++N +++  C
Sbjct: 430 LFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYC 489

Query: 185 KEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
              K+ +A  +F++  GK  A D+ SYN++ NG+C  +R +KA  +L +M  + L PN  
Sbjct: 490 LRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTV 549

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN ++KG    G++ +A   F +M        ++TY+ +++G    G +  A  +F  M
Sbjct: 550 TYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSM 609

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
               + P +  Y  +I+ +     +E A  +F ++   G  P   TYNV+I+GL   G  
Sbjct: 610 KEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLS 669

Query: 364 ERALEFVGRMK 374
           + A E   + K
Sbjct: 670 DEAYELFRKWK 680



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 79/169 (46%), Gaps = 1/169 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S++  I+     R       L+ +M    L P   T+  I +     G+   A ++F  M
Sbjct: 515 SYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKM 574

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRT 223
              G   +L +++ +L+ LCK   +++A  LFK  +  K + D+I Y ++  G  +  + 
Sbjct: 575 CSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKL 634

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
             A  +  ++   G+ P   TYN+++KG  + G  +EA+  F + K  K
Sbjct: 635 EVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYELFRKWKMMK 683


>gi|255580124|ref|XP_002530894.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529547|gb|EEF31500.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 519

 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 121/452 (26%), Positives = 218/452 (48%), Gaps = 11/452 (2%)

Query: 21  GLSPLTTTSPAPLPPAAADPAALASLILTS-TDPR-TLTQTLHCPSLHWTPQLVDQIIKR 78
            L+P T   P+P      D     S IL+   +P   L  +L   S H +  LV+Q++KR
Sbjct: 30  SLAPRTKNLPSP------DLVNEISRILSDHRNPHHDLELSLTTYSSHISTTLVEQVLKR 83

Query: 79  LWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWT-LVHRMKSLSLGPT 137
             N    A  FF      P + HS  S+   +D+    + +  +W  L+   +S     +
Sbjct: 84  CKNLGFSAQRFFLWAKRIPGFDHSKESYHILVDILGSSKQFALLWDFLIEIRESQDFEIS 143

Query: 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK 197
            + F ++   Y  A     A++ F  M E G + +++  + +L +LCK K  + A  +F 
Sbjct: 144 PQVFWLVFRAYSRANLPSDAIRAFDRMVEFGLKPTIDDLDQLLYVLCKRKHAKHAQQIFD 203

Query: 198 VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
             + +F+    +Y+++  GW  +  +  A +V  EM ++    ++  YN +L+ + + G+
Sbjct: 204 RVKHQFQTRAKTYSILVRGWGDIGESVSACKVFDEMREQQCAVDVLAYNSLLEAFCKGGK 263

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           + EA++ F EM     + D  T++  +  +    +I  A  V D M    ++P+V TYN 
Sbjct: 264 VSEAYKMFREMGSNGIKPDACTFSIFIRAYCEANDIHLAYRVLDEMKRYDLVPNVFTYNC 323

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           MI+ LCKK+ VE A  +  E++ +   P++ +YN ++   C   E+  A   + RM  D 
Sbjct: 324 MIKKLCKKEKVEEAYQLLNEIIERSGQPDAWSYNAILAYHCEHSEVNSATRLISRMVKDN 383

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
           C P+  +YN+L++     G  +R +E++E MG     P++ TY++++  +   KK   L 
Sbjct: 384 CLPDKHSYNMLLKLLIRVGRFDRAIEVWESMGEKGFYPSVSTYSVMVHGLC--KKKGKLE 441

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
            A K    M+D G  P   T   + N L+ +G
Sbjct: 442 EACKYFEMMIDEGIPPYSSTVEILRNRLIGLG 473


>gi|297844992|ref|XP_002890377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336219|gb|EFH66636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 537

 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 104/342 (30%), Positives = 181/342 (52%), Gaps = 1/342 (0%)

Query: 85  KALHFFNILSYHPTYAH-SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAI 143
           ++L FFN  +    Y   SP  ++  IDLA ++R +   W L+  MKS ++  + +TF I
Sbjct: 132 QSLAFFNWATSRDDYDQKSPHPYNEMIDLAGKVRQFDLAWHLIDLMKSRNVEISIETFTI 191

Query: 144 IAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF 203
           +  RYV AG A  AV  F  M ++GC     +F+ ++  L ++++  +A + F   + +F
Sbjct: 192 LIRRYVRAGLASEAVHCFNRMEDYGCVPDQIAFSIVISNLSRKRRASEAQSFFDSLKDRF 251

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
           + DVI Y  +  GWC     ++A +V K+M   G+ PN+ TY+IV+    R GQI  A  
Sbjct: 252 EPDVIVYTNLVRGWCRAGEISEAEKVFKDMKLAGIEPNVYTYSIVIDALCRCGQISRAHD 311

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
            F +M    C  + +T+  ++      G  ++   V++ M   G  P   TYN +I+  C
Sbjct: 312 VFADMLDSGCAPNAITFNNLMRVHVKAGRPEKVLQVYNQMKKLGCEPDTITYNFLIETHC 371

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
           + +++ENA+ V   M+ K    N++T+N + R +    ++  A     +M + +CEPN  
Sbjct: 372 RDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTV 431

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           TYNIL+R F  +   +  L++ + M      PN++TY +L++
Sbjct: 432 TYNILMRMFAGSKSTDMVLKMKKDMDDKEVEPNVNTYRLLVT 473



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 85/183 (46%), Gaps = 4/183 (2%)

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y  ++   G V +   A ++ D M +  V  S+ T+  +I+   +      A+  F  M 
Sbjct: 154 YNEMIDLAGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRME 213

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             G +P+   +++VI  L        A  F   +KD   EP+V  Y  L+R +C AGEI 
Sbjct: 214 DYGCVPDQIAFSIVISNLSRKRRASEAQSFFDSLKD-RFEPDVIVYTNLVRGWCRAGEIS 272

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
              ++F+ M      PN+ TY+I+I ++    +   +  A  +  +M+D G  P   TFN
Sbjct: 273 EAEKVFKDMKLAGIEPNVYTYSIVIDALC---RCGQISRAHDVFADMLDSGCAPNAITFN 329

Query: 460 RVL 462
            ++
Sbjct: 330 NLM 332


>gi|225432738|ref|XP_002279088.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial [Vitis vinifera]
          Length = 535

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 109/390 (27%), Positives = 199/390 (51%), Gaps = 3/390 (0%)

Query: 68  TPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVH 127
           +  LV+Q++KR  N  + A  FF        Y HS +S++  +D+  +L+ +  +W LV 
Sbjct: 118 SESLVEQVLKRFSNDWIPAFGFFKWAKAQTGYRHSMNSYNSMVDILGKLKKFDLMWELVE 177

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
            M  L    +  T   +  R   A +   A++ F  M   G ++   + NT++D L KE 
Sbjct: 178 EMDRLGGYVSLATMTKVMRRLARASRWKDAIEAFRGMERFGVKKDTLAMNTLMDALVKEN 237

Query: 188 KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
            VE A ++F  F+     +  ++NV+ +GWC  ++ + AL+ + EM + G  P++ +Y  
Sbjct: 238 SVEHANDVFVEFKDSILLNPHTFNVLIHGWCKARKMDNALKSMAEMKEHGFCPDVISYTS 297

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           +++ Y R     +      EM+++ C  +VVTYT ++H  G   EI +A  V++ M    
Sbjct: 298 IVEAYCREKDFRKVNSVLNEMEEKGCPPNVVTYTIVMHALGKGKEISKALEVYEKMKGSS 357

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
            +P  + Y+++I +L K   +++A  VFE+M  +G +P+  TYN +I   C   + E AL
Sbjct: 358 CVPDTSFYSSLIYILSKAGRLKDARDVFEDMTKQGAIPDVLTYNTMISAACMHSQEEDAL 417

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           + + +M++  C+P++ TY+ L++  C    ++    L   M        + TY++L+  +
Sbjct: 418 KLLLKMEESSCKPDLNTYSPLLKMCCRNNRMKVLSALLNHMFKNDISLEVGTYSLLVHGL 477

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
               KS  L  A     EMV +G +P+  T
Sbjct: 478 C---KSGKLEHACLFFEEMVSKGLVPKDCT 504



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 109/212 (51%), Gaps = 1/212 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S+   ++   R +D+R V ++++ M+     P   T+ I+        +  +A++++  M
Sbjct: 294 SYTSIVEAYCREKDFRKVNSVLNEMEEKGCPPNVVTYTIVMHALGKGKEISKALEVYEKM 353

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRT 223
               C    + +++++ +L K  +++ A ++F+ + +     DV++YN + +  C+  + 
Sbjct: 354 KGSSCVPDTSFYSSLIYILSKAGRLKDARDVFEDMTKQGAIPDVLTYNTMISAACMHSQE 413

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
             AL++L +M +    P+L TY+ +LK   R  +++        M K    ++V TY+ +
Sbjct: 414 EDALKLLLKMEESSCKPDLNTYSPLLKMCCRNNRMKVLSALLNHMFKNDISLEVGTYSLL 473

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
           VHG    G+++ A   F+ MV+ G++P   T+
Sbjct: 474 VHGLCKSGKLEHACLFFEEMVSKGLVPKDCTH 505


>gi|357455845|ref|XP_003598203.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355487251|gb|AES68454.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 503

 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 133/441 (30%), Positives = 221/441 (50%), Gaps = 16/441 (3%)

Query: 39  DPAALASLILTSTDPRTLTQT-LHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHP 97
           D   ++ ++LT  +P   T++ L    +  TP L+ Q +  L +H+  AL   N     P
Sbjct: 30  DAELISKILLTHHNPYHFTESSLQLNGITLTPILLTQTLTLLKHHSKIALSLHNFSKSLP 89

Query: 98  TYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRA 157
               S  S++  ID+ +++  +     L+  M  ++L PT  TF I+ +R +SA    +A
Sbjct: 90  NPPLSLQSYNLLIDIVSKVHQFDLASQLIVEMDQINLPPTPTTFFILIKRLISANLTRQA 149

Query: 158 VKIFLSMHEH-GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG 216
           V+ F  +  +   + + + F  +LD LCK   V+ A  LF     +F ADV  Y V+  G
Sbjct: 150 VRAFNEIESYTDTKLTSDHFTYLLDTLCKYGYVKHACELFNRNSNRFVADVKMYTVLIYG 209

Query: 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ----------IEEAWRFFL 266
           WC + R   AL  L EM  +G+ PN+ TYN++L G  R             I +A + F 
Sbjct: 210 WCKIGRFKTALSFLNEMKVKGVEPNVVTYNVILNGICRKASLHPEERFERTIRDAEKVFD 269

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           EM++   E DV +++ ++H +    + +   +    M   G+ P+V TY ++I+ LC   
Sbjct: 270 EMRESGIEPDVTSFSIVLHVYSRAHKPQLVLDKLGLMKEKGICPNVVTYTSVIKCLCSCG 329

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE-CEPNVQTY 385
            +E A  + +EMV  G  P + TYN   +      + ++AL+F  +MK+D  CEP   TY
Sbjct: 330 RIEEAEDLIDEMVRNGVSPCAATYNCFFKEYRGRKDADKALKFFKKMKEDGLCEPTTHTY 389

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
            +LI  F  A  I    E++  M      P+LD+Y +LI  +   KK  +   A +  +E
Sbjct: 390 GVLIAMFLKADMIGVVKEIWNDMMESGVGPDLDSYTVLIHGLCESKKWRE---ACQYFVE 446

Query: 446 MVDRGFMPRKFTFNRVLNGLL 466
           M+++GF+P+K TF  +  GL+
Sbjct: 447 MIEKGFLPQKVTFETLYRGLI 467



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 96/215 (44%), Gaps = 8/215 (3%)

Query: 117 RDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSF 176
           R  R    +   M+   + P   +F+I+   Y  A K    +     M E G   ++ ++
Sbjct: 259 RTIRDAEKVFDEMRESGIEPDVTSFSIVLHVYSRAHKPQLVLDKLGLMKEKGICPNVVTY 318

Query: 177 NTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235
            +++  LC   ++E+A +L  ++ R        +YN     +   K  +KAL+  K+M +
Sbjct: 319 TSVIKCLCSCGRIEEAEDLIDEMVRNGVSPCAATYNCFFKEYRGRKDADKALKFFKKMKE 378

Query: 236 RGL-NPNLTTYNIVLKGYFRA---GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
            GL  P   TY +++  + +A   G ++E W    +M +     D+ +YT ++HG     
Sbjct: 379 DGLCEPTTHTYGVLIAMFLKADMIGVVKEIWN---DMMESGVGPDLDSYTVLIHGLCESK 435

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           + + A   F  M+  G LP   T+  + + L + D
Sbjct: 436 KWREACQYFVEMIEKGFLPQKVTFETLYRGLIQSD 470



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 67/149 (44%), Gaps = 6/149 (4%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG-CRQSLNSFNTILDLL 183
           L+  M    + P   T+    + Y     AD+A+K F  M E G C  + +++  ++ + 
Sbjct: 337 LIDEMVRNGVSPCAATYNCFFKEYRGRKDADKALKFFKKMKEDGLCEPTTHTYGVLIAMF 396

Query: 184 CKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
            K   +     ++  +       D+ SY V+ +G C  K+  +A +   EM+++G  P  
Sbjct: 397 LKADMIGVVKEIWNDMMESGVGPDLDSYTVLIHGLCESKKWREACQYFVEMIEKGFLPQK 456

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
            T+  + +G  ++  +   WR    +KKR
Sbjct: 457 VTFETLYRGLIQSDML-RTWR---RLKKR 481


>gi|255542990|ref|XP_002512558.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548519|gb|EEF50010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 511

 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 128/478 (26%), Positives = 244/478 (51%), Gaps = 27/478 (5%)

Query: 3   ALLRKPPKNHLHFFCIYRGLSPLTTTSPAPLPPAAADPAALASLILTSTDP-RTLTQTLH 61
            LL  PP  +L   C++      +T S   L P+  D   ++ ++L   +P   +  +L 
Sbjct: 11  TLLTSPP--NLRVQCLF------STFSLPSLEPSN-DAEIVSEILLNHHNPFHAMESSLQ 61

Query: 62  CPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRT 121
              +  +  L+ Q + RL +++  AL FF+     P+ + + ++++  ID+ +++R +  
Sbjct: 62  LHGITLSSSLLHQTLLRLRHNSKIALSFFHYSLSLPSSSVNTTTYNLIIDILSKVRQFDV 121

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS--FNTI 179
            W L+ +M   +L P   TF I+  R +SAG   +A++ F  M E    +++N   F  +
Sbjct: 122 SWQLIIQMDQNNLQPNSHTFLILIRRLISAGFTRQAIRAFDDM-ESFIAETVNQTHFCFL 180

Query: 180 LDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
           LD LCK   ++ A  +F   + +F  +V  Y V+  GWC + R + A   ++EM + G+ 
Sbjct: 181 LDTLCKYGYIKVAVEVFNKRKFRFLPNVRIYTVLIYGWCKIGRIDMAERFIREMDEMGIE 240

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRF----------FLEMKKRKCEIDVVTYTTIVHGFGV 289
            N+ TYN++L G  R  +++   RF          F EM+++  E DV +++ ++H +  
Sbjct: 241 ANVVTYNVLLDGICRRAKLQPEGRFERTIMKADKVFDEMRQKGIEPDVTSFSILLHVYSR 300

Query: 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
             + +   +    M   G+ P+VATY ++++ LC    +++A  + E+MV  G  PN+ T
Sbjct: 301 AHKPQLTVDKLKLMEEMGICPTVATYTSVLKCLCSCGRIDDAEELLEQMVRNGVSPNAAT 360

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDE-CEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           YN   +      + E AL+   +++ +  C+P+V TYNIL+  F          E++  +
Sbjct: 361 YNCFFKEYRGRKDPETALKLYRKIRQENLCDPSVHTYNILLGMFMKLNRFNIVNEIWNDL 420

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
            S    P+LD+Y +L+  +  ++K      A +  +EM+++G +P+K TF  +  GL+
Sbjct: 421 RSSGSGPDLDSYTLLVHGLCEKQKWQK---ACQFFVEMIEKGLLPQKATFEMLYAGLI 475



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/141 (21%), Positives = 66/141 (46%), Gaps = 3/141 (2%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM-HEHGCRQSLNSFNTILDLL 183
           L+ +M    + P   T+    + Y      + A+K++  +  E+ C  S++++N +L + 
Sbjct: 345 LLEQMVRNGVSPNAATYNCFFKEYRGRKDPETALKLYRKIRQENLCDPSVHTYNILLGMF 404

Query: 184 CKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
            K  +      ++   R      D+ SY ++ +G C  ++  KA +   EM+++GL P  
Sbjct: 405 MKLNRFNIVNEIWNDLRSSGSGPDLDSYTLLVHGLCEKQKWQKACQFFVEMIEKGLLPQK 464

Query: 243 TTYNIVLKGYFRAGQIEEAWR 263
            T+ ++  G  ++  +   WR
Sbjct: 465 ATFEMLYAGLIQSNML-RTWR 484


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 115/390 (29%), Positives = 206/390 (52%), Gaps = 6/390 (1%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           S+F+  I    +    R    ++  M +  L P + TF  + + ++  G  + A+K+   
Sbjct: 159 STFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQ 218

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKR 222
           M  +GC  +  S   +++  CKE +VE+A   + +V    F  D +++N + NG+C +  
Sbjct: 219 MLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGN 278

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
            N AL+++  M+++G +P++ TYN ++ G  + G+ E+A     +M  R+C  + VTY T
Sbjct: 279 VNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNT 338

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++       EI+ A ++   +V+ G+LP V T+N +IQ LC   + + A+ +FEEM  KG
Sbjct: 339 LISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKG 398

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
             P+  TY+++I  LC+   ++ AL  +  M+   C  N   YN LI   C +  IE   
Sbjct: 399 CKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAE 458

Query: 403 ELFEKMG-SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
           E+F++M   GV   ++ TYN LI  +   K+ ++   A +L+ +M+  G  P KFT+N +
Sbjct: 459 EIFDQMELLGVSRSSV-TYNTLIDGLCKNKRVEE---ASQLMDQMIMEGLKPDKFTYNSL 514

Query: 462 LNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           L     +G+   A +I++  +  G  P  F
Sbjct: 515 LTYFCRVGDIEKAGDIVQTMASNGCEPDIF 544



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 104/370 (28%), Positives = 185/370 (50%), Gaps = 8/370 (2%)

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           ++    +F+  ++   R+ +      +V  M      P   T+  +       G+ ++A+
Sbjct: 259 FSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAI 318

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGW 217
           +I   M    C  +  ++NT++  LCKE ++E A +L ++   K    DV ++N +  G 
Sbjct: 319 EILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGL 378

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           CL K  + A+E+ +EM ++G  P+  TY+I++       +++EA     EM+   C  + 
Sbjct: 379 CLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNA 438

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           V Y T++ G      I+ A  +FD M   GV  S  TYN +I  LCK   VE A  + ++
Sbjct: 439 VVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQ 498

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M+ +G  P+  TYN ++   C  G++E+A + V  M  + CEP++ TY  LI   C AG 
Sbjct: 499 MIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGR 558

Query: 398 IERGLELFE--KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
           ++   +L    +M   V  P+   YN +I ++F+RK++ + +   +L  EM+++   P  
Sbjct: 559 VDVASKLLRSVQMKGIVLTPH--AYNPVIQALFMRKRTKEGM---RLFREMMEKSDPPDA 613

Query: 456 FTFNRVLNGL 465
            T   V  GL
Sbjct: 614 LTHKIVFRGL 623



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/378 (27%), Positives = 189/378 (50%), Gaps = 14/378 (3%)

Query: 97  PTYAHSPSSFDH--------AIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERY 148
           PT   +PSS  H         +    +   + ++ TL+ ++KS    P   TFA + + +
Sbjct: 41  PTLCTTPSSTTHHPLPPNETLLLQLTQSSSFDSITTLLKQLKSSGSIPNATTFATLIQSF 100

Query: 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADV 207
            +  + +  +KI    +E G +   N +N  L+ L ++ K++    L  K+       DV
Sbjct: 101 TNFHEIENLLKIL--ENELGFKPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDV 158

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
            ++NV+    C   +   A+ +L+EM + GL P+  T+  +++G+   G +  A +   +
Sbjct: 159 STFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQ 218

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M    C +  V+   +V+GF   G ++ A      +   G  P   T+N+++   C+  +
Sbjct: 219 MLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGN 278

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
           V +A+ + + M+ KG+ P+  TYN +I G+C  GE E+A+E + +M   EC PN  TYN 
Sbjct: 279 VNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNT 338

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           LI   C   EIE   +L   + S   LP++ T+N LI  + + K  D   +A ++  EM 
Sbjct: 339 LISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQD---IAMEMFEEMK 395

Query: 448 DRGFMPRKFTFNRVLNGL 465
           ++G  P +FT++ +++ L
Sbjct: 396 NKGCKPDEFTYSILIDSL 413



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 137/280 (48%), Gaps = 4/280 (1%)

Query: 117 RDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSF 176
           ++      +   MK+    P + T++I+ +      +   A+ +   M   GC ++   +
Sbjct: 382 KNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVY 441

Query: 177 NTILDLLCKEKKVEKAYNLFKVFR--GKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           NT++D LCK +++E A  +F      G  ++ V +YN + +G C  KR  +A +++ +M+
Sbjct: 442 NTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSV-TYNTLIDGLCKNKRVEEASQLMDQMI 500

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
             GL P+  TYN +L  + R G IE+A      M    CE D+ TY T++ G    G + 
Sbjct: 501 MEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVD 560

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
            A  +   +   G++ +   YN +IQ L  +   +  + +F EM+ K   P++ T+ +V 
Sbjct: 561 VASKLLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEKSDPPDALTHKIVF 620

Query: 355 RGLCH-TGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           RGLC+  G ++ A++F   M +    P   ++  L    C
Sbjct: 621 RGLCNGGGPIQEAIDFTVEMLEKGILPEFPSFGFLAEGLC 660



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/291 (20%), Positives = 119/291 (40%), Gaps = 46/291 (15%)

Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           + S  +++  ID   + +       L+ +M    L P + T+  +   +   G  ++A  
Sbjct: 470 SRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGD 529

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVIS---YNVIANG 216
           I  +M  +GC   + ++ T++  LC+  +V+ A  L +    + K  V++   YN +   
Sbjct: 530 IVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSV--QMKGIVLTPHAYNPVIQA 587

Query: 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR-AGQIEEAWRFFLEMKKRKCEI 275
             + KRT + + + +EM+++   P+  T+ IV +G     G I+EA  F +EM ++    
Sbjct: 588 LFMRKRTKEGMRLFREMMEKSDPPDALTHKIVFRGLCNGGGPIQEAIDFTVEMLEK---- 643

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
                                          G+LP   ++  + + LC     +  I + 
Sbjct: 644 -------------------------------GILPEFPSFGFLAEGLCSLSMEDTLIELI 672

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
             ++ K  M    T   +IRG     +   AL  +G + D +   N + YN
Sbjct: 673 NMVMEKAQMSERETS--MIRGFLKIRKFNDALANLGGILDRQ---NPKRYN 718


>gi|147767159|emb|CAN71515.1| hypothetical protein VITISV_021787 [Vitis vinifera]
          Length = 655

 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 112/412 (27%), Positives = 207/412 (50%), Gaps = 10/412 (2%)

Query: 71  LVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMK 130
           L ++++ R  +       FF   S  P Y HS   +   I +  ++R +  VW L+  M+
Sbjct: 123 LTERVLNRCGDAGNLGYRFFVWASKQPGYRHSYEVYKAMIKILGKMRQFGAVWALIEEMR 182

Query: 131 SLS---LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
             +   + P    F ++  R+ SA    +A+++   M ++GC    + F  +LD LCK  
Sbjct: 183 RENPQFVSPY--VFVVLMRRFASARMVKKAIEVLDEMPKYGCEPDEHVFGCLLDALCKNG 240

Query: 188 KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
            V++A +LF+  R +F   +  +  +  GWC   +  +A  VL ++ + G  P++  YN 
Sbjct: 241 SVKEAASLFEDMRIRFTPTLKHFTSLLYGWCREGKLMEAKYVLVQIREAGFEPDIVVYNN 300

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           +L GY  AG++ +A+    EM++++CE +V+++TT++       +++ A  VF  M + G
Sbjct: 301 LLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCG 360

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
                 TY  +I   CK   +     + + M+ +G++PN  TY  ++       E+E  +
Sbjct: 361 CPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECI 420

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           E +  M+   C P++  YNI+IR  C  GEI+ G+ ++ +M +    P LDT+ I+I   
Sbjct: 421 ELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRVWNEMEATGLSPGLDTFVIMIHGF 480

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFM--PRKFTFNRVLNGLLLIGNQGLAKEI 477
             ++    L+ A +   EMV RG +  P+  T   +LN LL      ++K++
Sbjct: 481 LSQR---CLVEACEFFKEMVGRGLLSAPQYGTLKELLNSLLRAEKLEMSKDV 529



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 111/273 (40%), Gaps = 38/273 (13%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           + L+  M+     P   +F  + +   +  K + A+++F  M   GC     ++ T++  
Sbjct: 315 YDLLKEMRRKECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISG 374

Query: 183 LCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
            CK  K+ K Y L   + +     + ++Y  I       +   + +E+++EM   G  P+
Sbjct: 375 FCKWGKISKGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPD 434

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           L  YNIV++   + G+I+E  R + EM+       + T+  ++HGF     +  A   F 
Sbjct: 435 LNIYNIVIRLACKLGEIKEGVRVWNEMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFK 494

Query: 302 GMVNGGVL--PSVATYNAMIQVLCKKDSVENAILVFE----------------------- 336
            MV  G+L  P   T   ++  L + + +E +  V+                        
Sbjct: 495 EMVGRGLLSAPQYGTLKELLNSLLRAEKLEMSKDVWSCIMTKGCDLNVYAWTIWIHALFS 554

Query: 337 ------------EMVGKGYMPNSTTYNVVIRGL 357
                       +M+  G MP   T+  ++RGL
Sbjct: 555 NGHVKEACSYCLDMMDAGVMPQPDTFAKLMRGL 587



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 89/192 (46%), Gaps = 3/192 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+  I   +    + +  +++   M + GC   LN +N ++ L CK  ++++   +
Sbjct: 398 PNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRV 457

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL--NPNLTTYNIVLKGY 252
           +           + ++ ++ +G+   +   +A E  KEMV RGL   P   T   +L   
Sbjct: 458 WNEMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLLSAPQYGTLKELLNSL 517

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
            RA ++E +   +  +  + C+++V  +T  +H     G +K A +    M++ GV+P  
Sbjct: 518 LRAEKLEMSKDVWSCIMTKGCDLNVYAWTIWIHALFSNGHVKEACSYCLDMMDAGVMPQP 577

Query: 313 ATYNAMIQVLCK 324
            T+  +++ L K
Sbjct: 578 DTFAKLMRGLRK 589


>gi|225437663|ref|XP_002279193.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Vitis vinifera]
          Length = 526

 Score =  197 bits (502), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 121/431 (28%), Positives = 217/431 (50%), Gaps = 16/431 (3%)

Query: 38  ADPAALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRL-WNHA--LKALHFFNILS 94
            D   +  ++ +++  R L Q+L    +  +  L+D+++KR+ ++H    +AL FFN  +
Sbjct: 58  GDVETVFRIVSSASSTRNLKQSLKSSGVFLSNDLIDKVLKRVRFSHGNPFQALAFFNYTN 117

Query: 95  YHPTYAHSPSSFDHAIDLAARLRDYRTVWTLV--HRMKSLSLGPTQKTFAIIAERYVSAG 152
               + H+P S D  + +  R R +  +W L+   R K  SL  + ++  ++  R     
Sbjct: 118 KRKGFYHTPFSLDTMLYILGRSRRFDQIWELLVDMRRKDQSL-ISPRSVQVVLGRIAKVC 176

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNV 212
              + V+ F    +         FN +L  LC+EK +  A N++   +  F+ D+ ++N+
Sbjct: 177 SVKQTVESFRKFKKLVPEFDTACFNALLRTLCQEKSMRDARNVYHSLKHDFRPDLRTFNI 236

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           + +GW   K   +A     EM + G+ P++ +YN ++  Y +  +IE A++   +M+  +
Sbjct: 237 LLSGW---KSAEEAEGFFDEMREMGVEPDVVSYNCLIDVYCKGREIERAYKVIDKMRDEQ 293

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
              DV++YT+I+ G G+VG+  +AR+V   M   G  P VA YNA I+  C  + + +A 
Sbjct: 294 ISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDVAAYNAAIRNFCIANRLGDAD 353

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
            + +EMVGKG  PN+TTYN+  R    + ++ R+     RMK   C PN Q+   L R F
Sbjct: 354 GLMDEMVGKGLSPNATTYNLFFRCFYWSNDLGRSCGLYQRMKKTGCLPNTQSCMFLTRLF 413

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD--DLLVAGKLLIEMVDRG 450
               ++E  LEL+  M          +Y IL+S +      D   L+   K  ++M+++G
Sbjct: 414 RRQEKVEMALELWNDMVE----KGFGSY-ILVSDVLFDMLCDMGKLVEVEKCCLQMIEKG 468

Query: 451 FMPRKFTFNRV 461
             P   +F R+
Sbjct: 469 HKPSNVSFRRI 479



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 110/245 (44%), Gaps = 7/245 (2%)

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           +  +VL    +   +++    F + KK   E D   +  ++        ++ ARNV+  +
Sbjct: 164 SVQVVLGRIAKVCSVKQTVESFRKFKKLVPEFDTACFNALLRTLCQEKSMRDARNVYHSL 223

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            +    P + T+N +   L    S E A   F+EM   G  P+  +YN +I   C   E+
Sbjct: 224 KHD-FRPDLRTFNIL---LSGWKSAEEAEGFFDEMREMGVEPDVVSYNCLIDVYCKGREI 279

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           ERA + + +M+D++  P+V +Y  +I      G+ ++  ++ ++M    C P++  YN  
Sbjct: 280 ERAYKVIDKMRDEQISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDVAAYNAA 339

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I +  +  +  D   A  L+ EMV +G  P   T+N          + G +  + +   +
Sbjct: 340 IRNFCIANRLGD---ADGLMDEMVGKGLSPNATTYNLFFRCFYWSNDLGRSCGLYQRMKK 396

Query: 484 CGRLP 488
            G LP
Sbjct: 397 TGCLP 401


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  197 bits (502), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 120/432 (27%), Positives = 208/432 (48%), Gaps = 11/432 (2%)

Query: 63  PSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDYR 120
           P ++    L+D      ++H  +    F++ S        P   +F+  I+   ++  + 
Sbjct: 128 PDIYTLSILID-----CFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFA 182

Query: 121 TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180
                    ++    PT  T+  I       G+   A  +F  M E GC+ ++ ++N ++
Sbjct: 183 QAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILI 242

Query: 181 DLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
           D LCK+K V +A ++F   + K    D+ +YN +  G C  +R  +A  +L EM    + 
Sbjct: 243 DSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIM 302

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           PN+ T+N+++    + G++ EA   F  M +   E DVVTY+++++G+ +  EI  AR +
Sbjct: 303 PNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKL 362

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
           FD M+  G  P   +YN +I+  CK   ++ A  +F EM+ +G  P++  YN +I GLC 
Sbjct: 363 FDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQ 422

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419
            G +  A +    M  +   P++ TY++L+  FC  G + +   LF  M S    P++  
Sbjct: 423 LGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAM 482

Query: 420 YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           YNILI +M    K  +L  A KL  E+  +G +P    +  ++N L   G    A E  R
Sbjct: 483 YNILIDAMC---KFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFR 539

Query: 480 LQSRCGRLPRQF 491
                G  P +F
Sbjct: 540 NMEGDGCPPDEF 551



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 172/363 (47%), Gaps = 4/363 (1%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           Y  V +L  +M+   L P   T +I+ + +    + D A  +F  M + G +    +FNT
Sbjct: 111 YGAVISLSKQMELAGLSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNT 170

Query: 179 ILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           +++ LCK  K  +A   F  F     +  V +Y  I NG C +  T  A  + K+M + G
Sbjct: 171 LINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAG 230

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
             PN+ TYNI++    +   + EA   F  MK ++   D+ TY +++ G       K A 
Sbjct: 231 CQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEAS 290

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
            + + M +  ++P++ T+N ++  +CK+  V  A  VF+ M   G  P+  TY+ ++ G 
Sbjct: 291 ALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGY 350

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
               E+  A +    M    C+P+  +YNILI+ +C A  I+   +LF +M      P+ 
Sbjct: 351 SLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDN 410

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
             YN LI  +    +   L  A  L   M   G +P  FT++ +L+G    G  G A  +
Sbjct: 411 VNYNTLIHGLCQLGR---LREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRL 467

Query: 478 LRL 480
            R+
Sbjct: 468 FRV 470



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 109/391 (27%), Positives = 182/391 (46%), Gaps = 48/391 (12%)

Query: 71  LVDQIIK-RLWNHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVH 127
           L+D + K +L N AL      +I SY      SP   +++  I      R ++    L++
Sbjct: 241 LIDSLCKDKLVNEAL------DIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLN 294

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
            M SL++ P                       IF             +FN ++D +CKE 
Sbjct: 295 EMTSLNIMPN----------------------IF-------------TFNVLVDAICKEG 319

Query: 188 KVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
           KV +A  +FK       + DV++Y+ +  G+ L     +A ++   M+ +G  P+  +YN
Sbjct: 320 KVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYN 379

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
           I++KGY +A +I+EA + F EM  +    D V Y T++HG   +G ++ A+++F  M + 
Sbjct: 380 ILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSN 439

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G LP + TY+ ++   CK+  +  A  +F  M      P+   YN++I  +C  G ++ A
Sbjct: 440 GNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDA 499

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
            +    +      PNVQ Y  +I   C  G ++  LE F  M    C P+  +YN++I  
Sbjct: 500 RKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIRG 559

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
               K   D   A +L+ EM DRGF+    T
Sbjct: 560 FLQYK---DESRAAQLIGEMRDRGFVAEAGT 587



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/387 (26%), Positives = 180/387 (46%), Gaps = 7/387 (1%)

Query: 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS--MH 165
           H  D A+  R+        + M      P    F  +    V  G+   AV I LS  M 
Sbjct: 64  HKHDDASSFRNIDDALASFNHMLHREPLPCIIQFTKLLSAIVKMGQYYGAV-ISLSKQME 122

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTN 224
             G    + + + ++D     ++V+ A+++F K+ +   + D +++N + NG C V +  
Sbjct: 123 LAGLSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFA 182

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           +A+E   +    G  P + TY  ++ G  + G+   A   F +M++  C+ +VVTY  ++
Sbjct: 183 QAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILI 242

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
                   +  A ++F  M    + P + TYN++IQ LC     + A  +  EM     M
Sbjct: 243 DSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIM 302

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           PN  T+NV++  +C  G++  A      M +   EP+V TY+ L+  +    EI    +L
Sbjct: 303 PNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKL 362

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           F+ M +  C P+  +YNILI      K+ D+   A +L  EM+ +G  P    +N +++G
Sbjct: 363 FDAMITKGCKPDAFSYNILIKGYCKAKRIDE---AKQLFNEMIHQGLTPDNVNYNTLIHG 419

Query: 465 LLLIGNQGLAKEILRLQSRCGRLPRQF 491
           L  +G    A+++ +     G LP  F
Sbjct: 420 LCQLGRLREAQDLFKNMHSNGNLPDLF 446


>gi|359496995|ref|XP_003635394.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Vitis vinifera]
          Length = 622

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 112/412 (27%), Positives = 207/412 (50%), Gaps = 10/412 (2%)

Query: 71  LVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMK 130
           L ++++ R  +       FF   S  P Y HS   +   I +  ++R +  VW L+  M+
Sbjct: 90  LTERVLNRCGDAGNLGYRFFVWASKQPGYRHSYEVYKAMIKILGKMRQFGAVWALIEEMR 149

Query: 131 SLS---LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
             +   + P    F ++  R+ SA    +A+++   M ++GC    + F  +LD LCK  
Sbjct: 150 RENPQFVSPY--VFVVLMRRFASARMVKKAIEVLDEMPKYGCEPDEHVFGCLLDALCKNG 207

Query: 188 KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
            V++A +LF+  R +F   +  +  +  GWC   +  +A  VL ++ + G  P++  YN 
Sbjct: 208 SVKEAASLFEDMRIRFTPTLKHFTSLLYGWCREGKLMEAKYVLVQIREAGFEPDIVVYNN 267

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           +L GY  AG++ +A+    EM++++CE +V+++TT++       +++ A  VF  M + G
Sbjct: 268 LLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCG 327

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
                 TY  +I   CK   +     + + M+ +G++PN  TY  ++       E+E  +
Sbjct: 328 CPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECI 387

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           E +  M+   C P++  YNI+IR  C  GEI+ G+ ++ +M +    P LDT+ I+I   
Sbjct: 388 ELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRVWNEMEATGLSPGLDTFVIMIHGF 447

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFM--PRKFTFNRVLNGLLLIGNQGLAKEI 477
             ++    L+ A +   EMV RG +  P+  T   +LN LL      ++K++
Sbjct: 448 LSQRC---LVEACEFFKEMVGRGLLSAPQYGTLKELLNSLLRAEKLEMSKDV 496



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/274 (21%), Positives = 111/274 (40%), Gaps = 38/274 (13%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
            + L+  M+     P   +F  + +   +  K + A+++F  M   GC     ++ T++ 
Sbjct: 281 AYDLLKEMRRKECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLIS 340

Query: 182 LLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
             CK  K+ K Y L   + +     + ++Y  I       +   + +E+++EM   G  P
Sbjct: 341 GFCKWGKISKGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTP 400

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           +L  YNIV++   + G+I+E  R + EM+       + T+  ++HGF     +  A   F
Sbjct: 401 DLNIYNIVIRLACKLGEIKEGVRVWNEMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFF 460

Query: 301 DGMVNGGVL--PSVATYNAMIQVLCKKDSVENAILVFE---------------------- 336
             MV  G+L  P   T   ++  L + + +E +  V+                       
Sbjct: 461 KEMVGRGLLSAPQYGTLKELLNSLLRAEKLEMSKDVWSCIMTKGCDLNVYAWTIWIHALF 520

Query: 337 -------------EMVGKGYMPNSTTYNVVIRGL 357
                        +M+  G MP   T+  ++RGL
Sbjct: 521 SNGHVKEACSYCLDMMDAGVMPQPDTFAKLMRGL 554



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 89/192 (46%), Gaps = 3/192 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+  I   +    + +  +++   M + GC   LN +N ++ L CK  ++++   +
Sbjct: 365 PNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRV 424

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL--NPNLTTYNIVLKGY 252
           +           + ++ ++ +G+   +   +A E  KEMV RGL   P   T   +L   
Sbjct: 425 WNEMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLLSAPQYGTLKELLNSL 484

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
            RA ++E +   +  +  + C+++V  +T  +H     G +K A +    M++ GV+P  
Sbjct: 485 LRAEKLEMSKDVWSCIMTKGCDLNVYAWTIWIHALFSNGHVKEACSYCLDMMDAGVMPQP 544

Query: 313 ATYNAMIQVLCK 324
            T+  +++ L K
Sbjct: 545 DTFAKLMRGLRK 556


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 124/460 (26%), Positives = 220/460 (47%), Gaps = 43/460 (9%)

Query: 65  LHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWT 124
           + WT  ++D + K   N   +A  +F  +    T  +   +++  I+   ++      + 
Sbjct: 8   ITWTI-MIDGLCK--ANRLPEATTYFAKMKKKGTVPNE-WTYNVLINGFCKVHKVHRAYL 63

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  MK   L P   T++ +   +    K D A K+F  M E+GC  +L ++NT+L  LC
Sbjct: 64  LLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLC 123

Query: 185 KEKKVEKAYNL--------------------------------FKVFR----GKFKADVI 208
           +   +++AY L                                 KVF     G    DV+
Sbjct: 124 RNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVV 183

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           +Y+ +  G C   R ++A ++ ++M +    P++ T+  ++ G  +  +++EA +    M
Sbjct: 184 AYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETM 243

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
           + R C  +V+TY++++ G    G+++ A+ VF  M+  G+ P+V TYN++I   C  + V
Sbjct: 244 EDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGV 303

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           ++A+L+ EEM   G +P+  TYN +I GLC TG    A    G MK   C P+V TY+ L
Sbjct: 304 DSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCL 363

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           I  FC    I+    LF+ M     LP++ T++ L+         DD   A +LL EMV 
Sbjct: 364 IGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDD---AERLLEEMVA 420

Query: 449 RGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
               P  +T+  +++G   +G    A+ +L+  ++ G  P
Sbjct: 421 SDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQP 460



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 116/370 (31%), Positives = 190/370 (51%), Gaps = 9/370 (2%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L  +M+  S  P   TF  + +      +   A ++  +M +  C  ++ ++++++D LC
Sbjct: 204 LFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLC 263

Query: 185 KEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           K  +V  A  +FK  + RG  + +V++YN + +G+C+    + AL +++EM   G  P++
Sbjct: 264 KTGQVRDAQEVFKRMIVRG-IEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDI 322

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TYN ++ G  + G+  EA R F +MK + C  DV+TY+ ++ GF  +  I  AR +FD 
Sbjct: 323 ITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDD 382

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M+   VLP V T++ +++  C    V++A  + EEMV     P+  TY  ++ G C  G 
Sbjct: 383 MLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGR 442

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYN 421
           M  A   + RM    C+PNV TY  LI  FC AG+     +L E+M G+GV  PN+ TY 
Sbjct: 443 MVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGV-QPNVITYR 501

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMV-DRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
            LI        + DL  A K+L  +  D       F +  +++GL   G    A E+L  
Sbjct: 502 SLIGGFC---GTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEA 558

Query: 481 QSRCGRLPRQ 490
             + G  PR 
Sbjct: 559 IKQSGTPPRH 568



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 114/381 (29%), Positives = 184/381 (48%), Gaps = 10/381 (2%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   ID   +    R    +  RM    + P   T+  +   +      D A+ +   M
Sbjct: 254 TYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEM 313

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF-KADVISYNVIANGWCLVKRT 223
              GC   + ++NT++D LCK  +  +A  LF   + KF   DVI+Y+ +  G+C ++R 
Sbjct: 314 TATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERI 373

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A  +  +M+ + + P++ T++ +++GY  AG +++A R   EM    C  DV TYT++
Sbjct: 374 DMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSL 433

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           V GF  VG +  AR V   M   G  P+V TY A+I   C+      A  + EEMVG G 
Sbjct: 434 VDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGV 493

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE-CEPNVQTYNILIRYFCDAGEIERGL 402
            PN  TY  +I G C TG++E A + + R++ DE C+ ++  Y +++   C  G +   L
Sbjct: 494 QPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAAL 553

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM-VDRGFMPRKFTFNRV 461
           EL E +      P  D Y  LI  +   K   +L  A ++L EM + R   P    +  V
Sbjct: 554 ELLEAIKQSGTPPRHDIYVALIRGLCQGK---ELGKAMEVLEEMTLSRKSRPNAEAYEAV 610

Query: 462 LNGLLLIGNQ----GLAKEIL 478
           +  L   G       LA E+L
Sbjct: 611 IQELAREGRHEEANALADELL 631



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 170/321 (52%), Gaps = 4/321 (1%)

Query: 169 CRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKAL 227
           C +++ ++  ++D LCK  ++ +A   F   + K    +  +YNV+ NG+C V + ++A 
Sbjct: 3   CEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAY 62

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
            +LKEM + GL PN+ TY+ V+ G+ R  +++ A++ F +M +  C  ++VTY T++ G 
Sbjct: 63  LLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGL 122

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
              G +  A  + D M   G+ P   +Y+ ++  LCK   ++ A+ VFE+       P+ 
Sbjct: 123 CRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDV 182

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
             Y+ +I GLC TG ++ A +   +M+++ CEP+V T+  L+   C    ++   ++ E 
Sbjct: 183 VAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLET 242

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467
           M    C PN+ TY+ LI  +    K+  +  A ++   M+ RG  P   T+N +++G  +
Sbjct: 243 MEDRNCTPNVITYSSLIDGLC---KTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCM 299

Query: 468 IGNQGLAKEILRLQSRCGRLP 488
                 A  ++   +  G LP
Sbjct: 300 TNGVDSALLLMEEMTATGCLP 320



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 101/229 (44%), Gaps = 38/229 (16%)

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
           +CE +V+T+T ++ G      +  A   F  M   G +P+  TYN +I   CK   V  A
Sbjct: 2   ECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRA 61

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR- 390
            L+ +EM   G  PN  TY+ VI G C   +++ A +   +M ++ C PN+ TYN L+  
Sbjct: 62  YLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSG 121

Query: 391 ----------------------------------YFCDAGEIERGLELFEKMGSGVCLPN 416
                                               C  G+I+  L++FE   +G C P+
Sbjct: 122 LCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPD 181

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           +  Y+ LI+ +    + D+   A KL  +M +    P   TF  +++GL
Sbjct: 182 VVAYSTLIAGLCKTGRLDE---ACKLFEKMRENSCEPDVVTFTALMDGL 227



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 70/146 (47%), Gaps = 3/146 (2%)

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           N  T+ ++I GLC    +  A  +  +MK     PN  TYN+LI  FC   ++ R   L 
Sbjct: 6   NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLL 65

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           ++M      PN+ TY+ +I     + K D    A KL  +MV+ G MP   T+N +L+GL
Sbjct: 66  KEMKESGLAPNVVTYSTVIHGFCRQTKVD---TAYKLFRQMVENGCMPNLVTYNTLLSGL 122

Query: 466 LLIGNQGLAKEILRLQSRCGRLPRQF 491
              G    A E+L      G  P +F
Sbjct: 123 CRNGLMDEAYELLDEMRERGLQPDKF 148


>gi|356560394|ref|XP_003548477.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Glycine max]
          Length = 612

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 120/416 (28%), Positives = 204/416 (49%), Gaps = 12/416 (2%)

Query: 43  LASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHS 102
           LA +    + P  + Q L   S+  +P+LV +++ R  N    A  FF      P YAHS
Sbjct: 132 LAIMHEVGSGPSQIKQKLEHCSIVLSPELVVEVLSRTRNDWEAAFTFFLWAGKQPGYAHS 191

Query: 103 PSSFDHAIDLAARLRDYRTVWTLVHRMKS----LSLGPTQKTFAIIAERYVSAGKADRAV 158
              +   I +  ++R + T W L+  M+     LSL  T +T  I+  +Y +     RA+
Sbjct: 192 VREYHSMISILGKMRKFDTAWNLIEEMRGGRNGLSL-VTPQTLLIMIRKYCAVHDVARAI 250

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWC 218
             F +      R  L  F+++L  LC+ K V+ A  L    +  F  D  S+N+I NGWC
Sbjct: 251 NTFYAYKRFNFRVGLEEFHSLLSALCRYKNVQDAEYLLFCNKDVFPLDTKSFNIILNGWC 310

Query: 219 -LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
            L+  T+ A  +  EM+ R +  ++ +Y  ++  Y ++ ++ +  R F EMKKRK   D 
Sbjct: 311 NLIVSTSHAERIWHEMIKRRIQHDVVSYGSIISCYSKSSKLYKVLRMFDEMKKRKITPDR 370

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
             Y  +++       +K A N+   M    V P V TYN++I+ LCK   V+ A  +F+E
Sbjct: 371 KVYNAVIYALAKGRLVKEAVNLIGTMEGNDVTPDVVTYNSLIKPLCKAHKVDEAKQLFDE 430

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M+ +   P   T++   R L      E   E + +MK+  C P ++TY +LIR FC   +
Sbjct: 431 MLKRHLSPTIQTFHAFFRIL---RTKEEVFELLDKMKELRCYPTIETYIMLIRKFCRWCQ 487

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
           ++   ++++ M       +  +Y +LI  +F+  K ++   A +   EM ++GF+P
Sbjct: 488 LDDVFKIWDAMREDEISHDRSSYIVLIHGLFLNGKLEE---AQRYYAEMQEKGFLP 540



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/230 (18%), Positives = 102/230 (44%), Gaps = 4/230 (1%)

Query: 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           H   S+   I   ++      V  +   MK   + P +K +  +            AV +
Sbjct: 333 HDVVSYGSIISCYSKSSKLYKVLRMFDEMKKRKITPDRKVYNAVIYALAKGRLVKEAVNL 392

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCL 219
             +M  +     + ++N+++  LCK  KV++A  LF ++ +      + +++       +
Sbjct: 393 IGTMEGNDVTPDVVTYNSLIKPLCKAHKVDEAKQLFDEMLKRHLSPTIQTFHAFFR---I 449

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
           ++   +  E+L +M +    P + TY ++++ + R  Q+++ ++ +  M++ +   D  +
Sbjct: 450 LRTKEEVFELLDKMKELRCYPTIETYIMLIRKFCRWCQLDDVFKIWDAMREDEISHDRSS 509

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
           Y  ++HG  + G+++ A+  +  M   G LP   T   +   +  K + E
Sbjct: 510 YIVLIHGLFLNGKLEEAQRYYAEMQEKGFLPEPKTEEMLQAWVSGKQATE 559


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 185/348 (53%), Gaps = 4/348 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           +   ID   + +     + L   M S  + P   T++ +   +   GK   AV +F  M 
Sbjct: 201 YSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMI 260

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTN 224
                 ++ +F+ ++D  CKE KV +A N+  V   K  K DV++YN + +G+CLVK+ N
Sbjct: 261 SDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVN 320

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           KA  +   M  RG+ P++ +Y+I++ G+ +   ++EA + F EM  ++   +VVTY ++V
Sbjct: 321 KAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLV 380

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            G    G    A  + D M + G   ++ TYN+++  +CK + V+ AI++  ++  KG  
Sbjct: 381 DGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQ 440

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           P+  TY V+I GLC  G ++ A +    +      PN+ TY  LI  FC+ G  + GL +
Sbjct: 441 PDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAM 500

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
             KM    C+PN  TY ILI S+F + ++D    A KLL EM+ RG +
Sbjct: 501 LSKMKDNGCIPNAITYEILIHSLFEKDENDK---AEKLLREMIARGLL 545



 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 192/347 (55%), Gaps = 7/347 (2%)

Query: 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF- 196
           Q ++  +       G+   AV++   +     R ++  ++TI+D +CK+K V  A++L+ 
Sbjct: 163 QVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYC 222

Query: 197 KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256
           ++   +   DV++Y+ + +G+C+V +   A+++   M+   +NPN+ T++I++ G+ + G
Sbjct: 223 EMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEG 282

Query: 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
           ++ EA      M K+  ++DVVTY +++ G+ +V ++ +A+++F+ M   GV P V +Y+
Sbjct: 283 KVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYS 342

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
            MI   CK   V+ A+ +FEEM  K   PN  TYN ++ GLC +G    ALE V  M D 
Sbjct: 343 IMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDR 402

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
               N+ TYN ++   C    +++ + L  K+      P++ TY +LI+ +    + DD 
Sbjct: 403 GQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDD- 461

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
             A K+  +++ +G+ P  +T+  ++NG     N+G   E L + S+
Sbjct: 462 --AQKVFEDLLVKGYSPNIYTYTSLINGFC---NKGFFDEGLAMLSK 503



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 178/352 (50%), Gaps = 4/352 (1%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           + + Y+T  +L  +M+   + P   T  ++   +   G    +  +F  + + G      
Sbjct: 70  KAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSVFAKILKKGYHPDAV 129

Query: 175 SFNTILDLLCKEKKVEKA-YNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           +F  ++  LC + +V KA Y   KV    F+ D +SY  + NG C V  T  A+++L+ +
Sbjct: 130 TFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLRRV 189

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
             + + PN+  Y+ ++    +   + +A+  + EM  ++   DVVTY++++ GF VVG++
Sbjct: 190 DGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKL 249

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           K A ++F+ M++  + P+V T++ +I   CK+  V  A  V   M+ K    +  TYN +
Sbjct: 250 KYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSL 309

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           + G C   ++ +A      M      P+V +Y+I+I  FC    ++  ++LFE+M     
Sbjct: 310 MDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQI 369

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            PN+ TYN L+  +    KS     A +L+ EM DRG      T+N +L+ +
Sbjct: 370 FPNVVTYNSLVDGLC---KSGRTSCALELVDEMHDRGQPSNIITYNSILDAI 418



 Score = 42.4 bits (98), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 64/136 (47%), Gaps = 3/136 (2%)

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
           +P +  +  ++  L    + + AL    +M+ +  +P+  T N+L+  F   G I+    
Sbjct: 55  IPPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFS 114

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           +F K+      P+  T+ ILI  + ++ +    L       ++V +GF   + ++  ++N
Sbjct: 115 VFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHD---KVVAQGFQLDQVSYGTLIN 171

Query: 464 GLLLIGNQGLAKEILR 479
           GL  +G    A ++LR
Sbjct: 172 GLCRVGETKAAVQLLR 187


>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
 gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
          Length = 734

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 114/350 (32%), Positives = 188/350 (53%), Gaps = 17/350 (4%)

Query: 152 GKADRAVKIF--LSMHEH-GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADV 207
           G  DRA  +   +S+  H  CR +  S+  ++  LC ++  ++A  L +  R    +ADV
Sbjct: 91  GHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADV 150

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           ++Y  +  G C     +KA+E++ EM + G+ PN+  Y+ +L+GY ++G+ E+  + F+E
Sbjct: 151 VTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVE 210

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M ++  E DVV YT ++     VG+ K+A  V D MV  G+ P+V TYN +I  +CK+ S
Sbjct: 211 MSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGS 270

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM--KDDECEPNVQTY 385
           V+ AI V ++M  KG  P+  TYN +I+GL    EM+ A+  +  M    +  +PNV T+
Sbjct: 271 VKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTF 330

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF----VRKKSDDLLVAGK 441
           N +I+  CD G + +  ++   M    C+ NL TYN+LI  +     VRK       A +
Sbjct: 331 NSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRK-------AME 383

Query: 442 LLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           L+ EM   G  P  FT++ ++ G   +     A+++L      G  P  F
Sbjct: 384 LMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELF 433



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 104/367 (28%), Positives = 191/367 (52%), Gaps = 7/367 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M    + P    ++ + + Y  +G+ +   K+F+ M E G    +  +  ++D LC
Sbjct: 172 LMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLC 231

Query: 185 KEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  K +KA+ +  +  R   + +V++YNV+ N  C      +A+ VLK+M ++G+ P++ 
Sbjct: 232 KVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVV 291

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRK--CEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           TYN ++KG     +++EA     EM + K   + +VVT+ +++ G   +G +++A  V  
Sbjct: 292 TYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRA 351

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M   G + ++ TYN +I  L +   V  A+ + +EM   G  P+S TY+++I+G C   
Sbjct: 352 MMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMW 411

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
           +++RA + +  M+D   EP +  Y  L+   C+ G +ER   LF +M +   L ++  Y+
Sbjct: 412 QVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPL-DVVAYS 470

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481
            +I       K+ DL  A +LL  +VD G  P   T++ V+N     G+   A  +L+  
Sbjct: 471 TMIHGAC---KAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQM 527

Query: 482 SRCGRLP 488
           +  G LP
Sbjct: 528 TASGFLP 534



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 121/239 (50%), Gaps = 2/239 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   TF  + +     G+  +A ++   M E GC  +L ++N ++  L +  KV KA  L
Sbjct: 325 PNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMEL 384

Query: 196 FKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
                    + D  +Y+++  G+C + + ++A ++L  M DRG+ P L  Y  +L     
Sbjct: 385 MDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCE 444

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G +E A   F EM      +DVV Y+T++HG    G++K A+ +   +V+ G+ P   T
Sbjct: 445 QGMMERARNLFNEMDN-NFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVT 503

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           Y+ +I +  K   +E A  V ++M   G++P+   ++ +I+G    GE+ + LE +  M
Sbjct: 504 YSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREM 562



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 142/274 (51%), Gaps = 13/274 (4%)

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           +FN+++  LC   ++ +A+ +  +        ++++YN++  G   V +  KA+E++ EM
Sbjct: 329 TFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEM 388

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
              GL P+  TY+I++KG+ +  Q++ A      M+ R  E ++  Y  ++      G +
Sbjct: 389 TSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMM 448

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           +RARN+F+ M N   L  VA Y+ MI   CK   ++ A  + + +V +G  P++ TY++V
Sbjct: 449 ERARNLFNEMDNNFPLDVVA-YSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIV 507

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           I     +G+ME A   + +M      P+V  ++ LI+ +   GEI + LEL  +M     
Sbjct: 508 INMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREM----- 562

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVA--GKLLIE 445
                T NI + S  +   S  L+ +  GK L++
Sbjct: 563 ----ITKNIALDSKIISTLSTSLVASNEGKALLQ 592



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 95/194 (48%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           R+   R    L+  M SL L P   T++I+ + +    + DRA  +  +M + G    L 
Sbjct: 374 RVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELF 433

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
            +  +L  +C++  +E+A NLF      F  DV++Y+ + +G C       A E+LK +V
Sbjct: 434 HYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIV 493

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
           D GL P+  TY+IV+  + ++G +E A     +M       DV  + +++ G+   GEI 
Sbjct: 494 DEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEIN 553

Query: 295 RARNVFDGMVNGGV 308
           +   +   M+   +
Sbjct: 554 KVLELIREMITKNI 567



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 72/181 (39%), Gaps = 41/181 (22%)

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDD---ECEPN--------------------- 381
           ++ +YN V+  LC  G  +RA   +  M  +    C PN                     
Sbjct: 76  DAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAV 135

Query: 382 --------------VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
                         V TY  LIR  CDA E+++ +EL  +M      PN+  Y+ L+   
Sbjct: 136 GLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGY 195

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
               + +D+   GK+ +EM ++G  P    +  +++ L  +G    A  ++ +  R G  
Sbjct: 196 CKSGRWEDV---GKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLE 252

Query: 488 P 488
           P
Sbjct: 253 P 253


>gi|449505568|ref|XP_004162510.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Cucumis sativus]
          Length = 614

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 104/406 (25%), Positives = 207/406 (50%), Gaps = 3/406 (0%)

Query: 53  PRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDL 112
           P  + + L+  +   +  LV Q++KR  N  ++A   F        Y HSP S++  +D+
Sbjct: 180 PENVAEALNGKAYRVSNTLVAQLLKRFHNDWIQAYGIFKWAKDQIPYRHSPESYNSMVDI 239

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
             + +++R +W LV  M  L+   + +T + +  R   AG+   A+  F ++ ++G    
Sbjct: 240 LGKAKNFRLMWELVDEMNHLAGSVSLETMSKVIRRLARAGRHQEAIHAFRNIEKYGISTD 299

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
             + N ++D L KE  VE A+N+F+  +     ++ S+NV+ +G+C  K+ ++A +++ E
Sbjct: 300 TTAMNVLMDALVKEASVEDAHNVFRELKCSIPFNLASFNVLIHGYCKAKKLDEAWKIMGE 359

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           +   GL P++ +Y   ++ + R        +  ++M+ + C+ +V+T+T I+H  G   +
Sbjct: 360 VEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFTIIMHALGKAKQ 419

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           I  A  V++ M   G +P  + Y+++I +L K   + +   + E+M  +G  P+  TYN 
Sbjct: 420 INEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPDVLTYNT 479

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           +I   C   + E AL  + +M++  C+P+++TY+ L++ FC    ++    L + M    
Sbjct: 480 LISCACAHSQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCRKKRMKVLKFLLDHMFKND 539

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
                 TY IL+  +    K   L +A     EM+ +  +P+  TF
Sbjct: 540 VSIEAGTYAILVRGLCENGK---LHLACSFFGEMLSKAMVPKDSTF 582


>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
          Length = 624

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 114/350 (32%), Positives = 188/350 (53%), Gaps = 17/350 (4%)

Query: 152 GKADRAVKIF--LSMHEH-GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADV 207
           G  DRA  +   +S+  H  CR +  S+  ++  LC ++  ++A  L +  R    +ADV
Sbjct: 91  GHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADV 150

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           ++Y  +  G C     +KA+E++ EM + G+ PN+  Y+ +L+GY ++G+ E+  + F+E
Sbjct: 151 VTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVE 210

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M ++  E DVV YT ++     VG+ K+A  V D MV  G+ P+V TYN +I  +CK+ S
Sbjct: 211 MSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGS 270

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM--KDDECEPNVQTY 385
           V+ AI V ++M  KG  P+  TYN +I+GL    EM+ A+  +  M    +  +PNV T+
Sbjct: 271 VKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTF 330

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF----VRKKSDDLLVAGK 441
           N +I+  CD G + +  ++   M    C+ NL TYN+LI  +     VRK       A +
Sbjct: 331 NSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRK-------AME 383

Query: 442 LLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           L+ EM   G  P  FT++ ++ G   +     A+++L      G  P  F
Sbjct: 384 LMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELF 433



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/367 (28%), Positives = 191/367 (52%), Gaps = 7/367 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M    + P    ++ + + Y  +G+ +   K+F+ M E G    +  +  ++D LC
Sbjct: 172 LMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLC 231

Query: 185 KEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  K +KA+ +  +  R   + +V++YNV+ N  C      +A+ VLK+M ++G+ P++ 
Sbjct: 232 KVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVV 291

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRK--CEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           TYN ++KG     +++EA     EM + K   + +VVT+ +++ G   +G +++A  V  
Sbjct: 292 TYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRA 351

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M   G + ++ TYN +I  L +   V  A+ + +EM   G  P+S TY+++I+G C   
Sbjct: 352 MMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMW 411

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
           +++RA + +  M+D   EP +  Y  L+   C+ G +ER   LF +M +   L ++  Y+
Sbjct: 412 QVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPL-DVVAYS 470

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481
            +I       K+ DL  A +LL  +VD G  P   T++ V+N     G+   A  +L+  
Sbjct: 471 TMIHGAC---KAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQM 527

Query: 482 SRCGRLP 488
           +  G LP
Sbjct: 528 TASGFLP 534



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 121/239 (50%), Gaps = 2/239 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   TF  + +     G+  +A ++   M E GC  +L ++N ++  L +  KV KA  L
Sbjct: 325 PNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMEL 384

Query: 196 FKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
                    + D  +Y+++  G+C + + ++A ++L  M DRG+ P L  Y  +L     
Sbjct: 385 MDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCE 444

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G +E A   F EM      +DVV Y+T++HG    G++K A+ +   +V+ G+ P   T
Sbjct: 445 QGMMERARNLFNEMDN-NFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVT 503

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           Y+ +I +  K   +E A  V ++M   G++P+   ++ +I+G    GE+ + LE +  M
Sbjct: 504 YSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREM 562



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 142/274 (51%), Gaps = 13/274 (4%)

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           +FN+++  LC   ++ +A+ +  +        ++++YN++  G   V +  KA+E++ EM
Sbjct: 329 TFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEM 388

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
              GL P+  TY+I++KG+ +  Q++ A      M+ R  E ++  Y  ++      G +
Sbjct: 389 TSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMM 448

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           +RARN+F+ M N   L  VA Y+ MI   CK   ++ A  + + +V +G  P++ TY++V
Sbjct: 449 ERARNLFNEMDNNFPLDVVA-YSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIV 507

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           I     +G+ME A   + +M      P+V  ++ LI+ +   GEI + LEL  +M     
Sbjct: 508 INMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREM----- 562

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVA--GKLLIE 445
                T NI + S  +   S  L+ +  GK L++
Sbjct: 563 ----ITKNIALDSKIISTLSTSLVASNEGKALLQ 592



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 94/190 (49%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           R+   R    L+  M SL L P   T++I+ + +    + DRA  +  +M + G    L 
Sbjct: 374 RVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELF 433

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
            +  +L  +C++  +E+A NLF      F  DV++Y+ + +G C       A E+LK +V
Sbjct: 434 HYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIV 493

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
           D GL P+  TY+IV+  + ++G +E A     +M       DV  + +++ G+   GEI 
Sbjct: 494 DEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEIN 553

Query: 295 RARNVFDGMV 304
           +   +   M+
Sbjct: 554 KVLELIREMI 563



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 72/181 (39%), Gaps = 41/181 (22%)

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDD---ECEPN--------------------- 381
           ++ +YN V+  LC  G  +RA   +  M  +    C PN                     
Sbjct: 76  DAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAV 135

Query: 382 --------------VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
                         V TY  LIR  CDA E+++ +EL  +M      PN+  Y+ L+   
Sbjct: 136 GLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGY 195

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
               + +D+   GK+ +EM ++G  P    +  +++ L  +G    A  ++ +  R G  
Sbjct: 196 CKSGRWEDV---GKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLE 252

Query: 488 P 488
           P
Sbjct: 253 P 253


>gi|449442128|ref|XP_004138834.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Cucumis sativus]
          Length = 591

 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 104/406 (25%), Positives = 207/406 (50%), Gaps = 3/406 (0%)

Query: 53  PRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDL 112
           P  + + L+  +   +  LV Q++KR  N  ++A   F        Y HSP S++  +D+
Sbjct: 157 PENVAEALNGKAYRVSNTLVAQLLKRFHNDWIQAYGIFKWAKDQIPYRHSPESYNSMVDI 216

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
             + +++R +W LV  M  L+   + +T + +  R   AG+   A+  F ++ ++G    
Sbjct: 217 LGKAKNFRLMWELVDEMNHLAGSVSLETMSKVIRRLARAGRHQEAIHAFRNIEKYGISTD 276

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
             + N ++D L KE  VE A+N+F+  +     ++ S+NV+ +G+C  K+ ++A +++ E
Sbjct: 277 TTAMNVLMDALVKEASVEDAHNVFRELKCSIPFNLASFNVLIHGYCKAKKLDEAWKIMGE 336

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           +   GL P++ +Y   ++ + R        +  ++M+ + C+ +V+T+T I+H  G   +
Sbjct: 337 VEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFTIIMHALGKAKQ 396

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           I  A  V++ M   G +P  + Y+++I +L K   + +   + E+M  +G  P+  TYN 
Sbjct: 397 INEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPDVLTYNT 456

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           +I   C   + E AL  + +M++  C+P+++TY+ L++ FC    ++    L + M    
Sbjct: 457 LISCACAHSQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCRKKRMKVLKFLLDHMFKND 516

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
                 TY IL+  +    K   L +A     EM+ +  +P+  TF
Sbjct: 517 VSIEAGTYAILVRGLCENGK---LHLACSFFGEMLSKAMVPKDSTF 559


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 134/462 (29%), Positives = 222/462 (48%), Gaps = 22/462 (4%)

Query: 16  FCIYRGLSPLTTTSPAPLPPAAADPAALASLILTSTDPRTLTQTLH-CPSLHWTPQLVDQ 74
           F +YR    L     A LP    DP   ASL       R L  T H C S   +  + D 
Sbjct: 89  FKLYRTAHSLAADLAATLP----DPTG-ASLF------RHLHDTFHLCSSPFSSSAVFDL 137

Query: 75  IIKRLWN-----HALKALHFFNILSYHPTYAHSPSSFDHAID-LAARLRDYRTVWTLVHR 128
           ++K L        AL  LH  N   + PT     +  D  +   ++  RDY     +   
Sbjct: 138 VVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAERVFRD 197

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M    + P   T+ +I    VS G  ++ +     M + G   ++ ++NT++D  CK+KK
Sbjct: 198 MVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKK 257

Query: 189 VEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           V++A  L +    G   A++ISYN + NG C   R ++  E+++EM  +GL P+  TYN 
Sbjct: 258 VKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNT 317

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ G+ + G + +      EM  +    +VVTYTT+++     G + RA  +FD M   G
Sbjct: 318 LVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRG 377

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           + P+  TY  +I   C+K  +  A  V  EM+  G+ P+  TYN ++ G C  G ++ A+
Sbjct: 378 LRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAV 437

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
             +  M +    P+V +Y+ +I  FC   E+ +  ++ E+M     LP+  TY+ LI  +
Sbjct: 438 GILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGL 497

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
            +++K   L+ A  L  EM+ RG  P + T+  ++N   + G
Sbjct: 498 CLQQK---LVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDG 536



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 125/441 (28%), Positives = 201/441 (45%), Gaps = 46/441 (10%)

Query: 58  QTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSF--DH----AID 111
           Q L   S H+TPQ    +   L N         N L++    A + + F   H    A+ 
Sbjct: 28  QRLASLSPHFTPQAASYV---LLNSQSDQRTLLNFLTWAQAQAQAHNFFFTPHCKCLALH 84

Query: 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE--HGC 169
           +  R + YRT  +L   + +    PT                      +F  +H+  H C
Sbjct: 85  ILVRFKLYRTAHSLAADLAATLPDPT-------------------GASLFRHLHDTFHLC 125

Query: 170 RQSLNS---FNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRT-- 223
               +S   F+ ++  L +   V KA  L  +  R  F   V+SYN + +   L++R+  
Sbjct: 126 SSPFSSSAVFDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDA--LLRRSSS 183

Query: 224 -----NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
                + A  V ++MV  G++PN+ TYN++++G    G +E+   F  +M+K     +VV
Sbjct: 184 NHRDYDDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVV 243

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TY T++       ++K A  +   M  GGV  ++ +YN++I  LC K  +     + EEM
Sbjct: 244 TYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEM 303

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
            GKG +P+  TYN ++ G C  G + + L  +  M      PNV TY  LI   C AG +
Sbjct: 304 RGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNL 363

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
            R +E+F++M      PN  TY  LI     +   ++   A K+L EM+  GF P   T+
Sbjct: 364 SRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNE---AYKVLSEMIVSGFSPSVVTY 420

Query: 459 NRVLNGLLLIGNQGLAKEILR 479
           N +++G   +G    A  ILR
Sbjct: 421 NALVHGYCFLGRVQEAVGILR 441



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/441 (25%), Positives = 203/441 (46%), Gaps = 15/441 (3%)

Query: 56  LTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAAR 115
           L +T H  +      L D     L+ H     H    L   P    S + FD  +   +R
Sbjct: 91  LYRTAHSLAADLAATLPDPTGASLFRHLHDTFH----LCSSPF--SSSAVFDLVVKSLSR 144

Query: 116 LRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKA-----DRAVKIFLSMHEHGCR 170
           L       TL+H        PT  ++  + +  +    +     D A ++F  M  +G  
Sbjct: 145 LGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAERVFRDMVRNGVS 204

Query: 171 QSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEV 229
            ++ ++N I+  +  +  +EK      K+ +     +V++YN + +  C  K+  +A+ +
Sbjct: 205 PNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMAL 264

Query: 230 LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289
           L+ M   G+  NL +YN V+ G    G++ E      EM+ +    D VTY T+V+GF  
Sbjct: 265 LRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCK 324

Query: 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
            G + +   +   MV  G+ P+V TY  +I  +CK  ++  A+ +F++M  +G  PN  T
Sbjct: 325 EGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERT 384

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
           Y  +I G C  G M  A + +  M      P+V TYN L+  +C  G ++  + +   M 
Sbjct: 385 YTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMV 444

Query: 410 SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
                P++ +Y+ +I+  F R++  +L  A ++  EMV++G +P   T++ ++ GL L  
Sbjct: 445 ERGLPPDVVSYSTVIAG-FCRER--ELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQ 501

Query: 470 NQGLAKEILRLQSRCGRLPRQ 490
               A ++ R   R G  P +
Sbjct: 502 KLVEAFDLFREMMRRGLPPDE 522



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 151/348 (43%), Gaps = 21/348 (6%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           + ++  M      P+  T+  +   Y   G+   AV I   M E G    + S++T++  
Sbjct: 402 YKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAG 461

Query: 183 LCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
            C+E+++ KA+ + +  V +G    D ++Y+ +  G CL ++  +A ++ +EM+ RGL P
Sbjct: 462 FCRERELGKAFQMKEEMVEKGVL-PDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPP 520

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           +  TY  ++  Y   G++ +A R   EM +R    D VTY+ +++G       K A+ + 
Sbjct: 521 DEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLL 580

Query: 301 DGMVNGGVLPSVATYNAMIQ---------------VLCKKDSVENAILVFEEMVGKGYMP 345
             +     +P   TYN +I+                 C K  +  A  VF+ M+ + + P
Sbjct: 581 LKLFYEESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKP 640

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           N+  YN++I G    G + +A      ++      +      L++     G  +    L 
Sbjct: 641 NAAIYNLMIHGHSRGGNVHKAYNLYMELEHSSFACHTVAVIALVKALAREGMNDELSRLL 700

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
           + +     L +     +L+   F     D +L    +L EM   G +P
Sbjct: 701 QNILRSCRLNDAKVAKVLVEVNFKEGNMDAVL---NVLTEMAKDGLLP 745



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/245 (19%), Positives = 102/245 (41%), Gaps = 16/245 (6%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           + L   M    L P + T+  +   Y   G+  +A+++   M + G      +++ +++ 
Sbjct: 507 FDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLING 566

Query: 183 LCKEKKVEKAYNLF-KVFRGKFKADVISYNVI---------------ANGWCLVKRTNKA 226
           L K+ + + A  L  K+F  +   D ++YN +                 G+C+    N+A
Sbjct: 567 LNKKARTKVAKRLLLKLFYEESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEA 626

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
             V K M+ R   PN   YN+++ G+ R G + +A+  ++E++        V    +V  
Sbjct: 627 DRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHKAYNLYMELEHSSFACHTVAVIALVKA 686

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
               G       +   ++    L        +++V  K+ +++  + V  EM   G +P+
Sbjct: 687 LAREGMNDELSRLLQNILRSCRLNDAKVAKVLVEVNFKEGNMDAVLNVLTEMAKDGLLPD 746

Query: 347 STTYN 351
              ++
Sbjct: 747 GGIHS 751



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/371 (17%), Positives = 145/371 (39%), Gaps = 56/371 (15%)

Query: 63  PSLHWTPQLVDQIIKR-LWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRT 121
           P+      L+D   ++ L N A K L    +  + P+   + ++  H      R+++   
Sbjct: 380 PNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVV-TYNALVHGYCFLGRVQE--- 435

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
              ++  M    L P   +++ +   +    +  +A ++   M E G      ++++++ 
Sbjct: 436 AVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQ 495

Query: 182 LLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
            LC ++K+ +A++LF+ + R     D ++Y  + N +C+    +KAL +  EMV RG  P
Sbjct: 496 GLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLP 555

Query: 241 NLTTYNIVL--------------------------------------------------K 250
           +  TY++++                                                  K
Sbjct: 556 DNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLIENCSNNEFKSVEGLVK 615

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
           G+   G + EA R F  M +R  + +   Y  ++HG    G + +A N++  + +     
Sbjct: 616 GFCMKGLMNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHKAYNLYMELEHSSFAC 675

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
                 A+++ L ++   +    + + ++    + ++    V++      G M+  L  +
Sbjct: 676 HTVAVIALVKALAREGMNDELSRLLQNILRSCRLNDAKVAKVLVEVNFKEGNMDAVLNVL 735

Query: 371 GRMKDDECEPN 381
             M  D   P+
Sbjct: 736 TEMAKDGLLPD 746


>gi|255564599|ref|XP_002523294.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537382|gb|EEF39010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 544

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 131/448 (29%), Positives = 219/448 (48%), Gaps = 20/448 (4%)

Query: 49  TSTDPRTLTQTLHCPSLHWT----PQLVDQIIKRLWNHALKALHFFNILS-YHPTYAHSP 103
           +  +P   + T+  P   W     P+ +  +I R  N  L AL  F     Y P ++H+ 
Sbjct: 37  SPNNPLPESYTVTPPIKPWPQRLYPKRLVSMITRQQNLDL-ALQIFEYAGKYQPNFSHNY 95

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
            ++D  I   +R R +  V  L+  +    +   +  F  +   Y  AGK D A++ F+ 
Sbjct: 96  DTYDSIIHKLSRARVFGPVELLLSDLHKSQIKCGENIFINVIRNYGLAGKPDFALRTFIR 155

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA--DVISYNVIANGWCLVK 221
           + +   ++S+ S NT+L+   + K+ +  + +FK  R K+    +V + N++    C   
Sbjct: 156 IQDFNVQRSVRSLNTLLNAFVQNKRYDLVHAMFKNCRSKYGVLPNVFTCNILIKALCKKN 215

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
               A++VL EM   G+ PN+ TY  +L GY   G +  A + F E+  R    D  TYT
Sbjct: 216 DVESAVKVLDEMPAMGMIPNVVTYTTILGGYSSRGDMVNANKVFGELFDRGWLPDATTYT 275

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
            +++G+   G +  A  + D M   GV P+  TY  M++  CK+     A  + ++M+ +
Sbjct: 276 ILMNGYCEQGRLADAIKLMDDMGENGVEPNEVTYGVMVEAYCKEKKAGEARNLLDDMLER 335

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
            Y+P+S     VI  LC  G++E A E   RM    C P+    + LI + C  G++   
Sbjct: 336 QYVPSSALCCKVIDVLCEAGKIEEACELWKRMLKKNCMPDNAIMSTLIHWLCKEGKVWEA 395

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
            +LF +   G  +P+L TYN LI+ M    +  +L  AGKL  +M+++G+ P  FT+N +
Sbjct: 396 RKLFGEFERGA-IPSLLTYNTLIAGMC---EKGELSEAGKLWDDMMEKGYKPNAFTYNML 451

Query: 462 LNGLLLIGNQGLAKEILR-----LQSRC 484
           + G   IGN   AKE +R     L +RC
Sbjct: 452 IKGFSKIGN---AKEGIRILEEMLDNRC 476


>gi|224081016|ref|XP_002306265.1| predicted protein [Populus trichocarpa]
 gi|222855714|gb|EEE93261.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 136/490 (27%), Positives = 236/490 (48%), Gaps = 39/490 (7%)

Query: 10  KNHLHFFCIYRGLSPLTTTSPAPLPPAAADPAALASLILTSTDP-RTLTQTLHCPSLHWT 68
           +NH +F       SP   T    L P+  D   L+ ++L   +P   +  +L  P +  T
Sbjct: 29  QNH-NFSSDNDAFSPRNDTLLPTLQPSN-DADLLSQILLHHHNPFHAMESSLQLPGISLT 86

Query: 69  PQLVDQIIKRLWNHALKALHFFN-ILSYHPTYAHSPS------------------SFDHA 109
           P L+ Q + RL +++  AL  F+  LS  PT   +P                   +++  
Sbjct: 87  PSLLHQTLLRLRHNSKIALSLFHHSLSLPPTSTDNPPTSTGTSTTSADSSTATTVTYNLM 146

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID+ A++R +   W L+  M   ++ PT +TF ++  R V+AG   +A++ F  M E   
Sbjct: 147 IDILAKVRQFDVCWQLIVEMDQRNVKPTSETFFVLIRRLVAAGLTRQAIRAFDDM-ESFV 205

Query: 170 RQSLNS--FNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKAL 227
            + +N   F  +LD LCK   V+    +F   + +F  +V  Y V+  GWC + R + A 
Sbjct: 206 SEPVNETHFCFLLDTLCKYGYVKVGVEIFNKRKHRFSPNVKMYTVLIYGWCKIGRIDMAE 265

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF----------FLEMKKRKCEIDV 277
             LKE  +RG+   + TYN++L G  R   +    RF          F EM++R  E DV
Sbjct: 266 RFLKETGERGIEATVVTYNVLLNGICRRASLHPESRFERTITLAENLFDEMRERGIEPDV 325

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
            +++ ++H +    + +   +    M   G+ PSV TY ++++ LC    +E+A  +  E
Sbjct: 326 TSFSIVLHVYSRAHKPELTLDKLKLMKEKGICPSVVTYTSVVKCLCSCGRIEDAEELLGE 385

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP-NVQTYNILIRYFCDAG 396
           MV  G    + TYN   +      + E AL+   +M++D      + +YNIL+R F    
Sbjct: 386 MVRNGVSRTAVTYNCFFKEYMGRKDAESALKLYKKMREDGLGSLGLHSYNILLRMFMMLN 445

Query: 397 EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
            ++   E++E + S    P+LD+Y +LI  +  ++K  +   A K  +EM+++G +P+K 
Sbjct: 446 RLDIVNEIWEDLKSSGLGPDLDSYTMLIHGLCEKEKWRE---ACKFFVEMIEKGLLPQKV 502

Query: 457 TFNRVLNGLL 466
           TF  +  GL+
Sbjct: 503 TFETLYKGLI 512



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 103/223 (46%), Gaps = 3/223 (1%)

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIAN 215
           A  +F  M E G    + SF+ +L +  +  K E   +  K+ + K     V++Y  +  
Sbjct: 309 AENLFDEMRERGIEPDVTSFSIVLHVYSRAHKPELTLDKLKLMKEKGICPSVVTYTSVVK 368

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC-E 274
             C   R   A E+L EMV  G++    TYN   K Y      E A + + +M++     
Sbjct: 369 CLCSCGRIEDAEELLGEMVRNGVSRTAVTYNCFFKEYMGRKDAESALKLYKKMREDGLGS 428

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
           + + +Y  ++  F ++  +     +++ + + G+ P + +Y  +I  LC+K+    A   
Sbjct: 429 LGLHSYNILLRMFMMLNRLDIVNEIWEDLKSSGLGPDLDSYTMLIHGLCEKEKWREACKF 488

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           F EM+ KG +P   T+  + +GL  + +M R    + +  D+E
Sbjct: 489 FVEMIEKGLLPQKVTFETLYKGLIQS-DMLRTWRRLKKKLDEE 530


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 109/361 (30%), Positives = 190/361 (52%), Gaps = 7/361 (1%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           +++ +M  L   P + T   +   +    +   AV +   M E G R  + ++N I+D L
Sbjct: 141 SVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSL 200

Query: 184 CKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CK ++V  A + FK + R   + +V++Y  + NG C   R N A  +L++M+ R + PN+
Sbjct: 201 CKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNV 260

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TY+ +L  + + G++ EA   F EM +   + D+VTY+++++G  +   I  A  +FD 
Sbjct: 261 ITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDL 320

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           MV+ G  P V +YN +I   CK   VE+ + +F +M  +G + N+ TYN +I+G    G+
Sbjct: 321 MVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGD 380

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           +++A EF  +M      P++ TYNIL+   CD G +E+ L +FE M       ++ TY  
Sbjct: 381 VDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTT 440

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           +I  M    K +D   A  L   +  +G  P   T+  +++GL     +GL  E+  L +
Sbjct: 441 VIQGMCKTGKVED---AWGLFCSLSLKGLKPDIVTYTTMMSGLC---TKGLQHEVEALYT 494

Query: 483 R 483
           +
Sbjct: 495 K 495



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 145/295 (49%), Gaps = 9/295 (3%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M    + P   T++ + + +V  GK   A +IF  M        + +++++++ LC
Sbjct: 247 LLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLC 306

Query: 185 KEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
              ++++A  +F   V +G F  DV+SYN + NG+C  KR    +++ ++M  RGL  N 
Sbjct: 307 LHDRIDEANQMFDLMVSKGCF-PDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNT 365

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TYN +++G+F+ G +++A  FF +M       D+ TY  ++ G    G +++A  +F+ 
Sbjct: 366 VTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFED 425

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M    +   + TY  +IQ +CK   VE+A  +F  +  KG  P+  TY  ++ GLC  G 
Sbjct: 426 MQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCTKGL 485

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
                    +MK +    N     +        G+I    EL +KM S    P+L
Sbjct: 486 QHEVEALYTKMKQEGLMKNDSMLCL------GDGDITISAELIKKMLSCGYAPSL 534



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 145/282 (51%), Gaps = 4/282 (1%)

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           ++ K+  A NLF+ + + +    ++ +N + +    +K+ +  + + K+M   G+  +L 
Sbjct: 62  RDIKLHDAINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLY 121

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           T+NIV+  +    Q+  A     +M K   E D VT  ++V+GF     +  A ++ D M
Sbjct: 122 TFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM 181

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           V  G  P +  YNA+I  LCK   V +A+  F+E+  KG  PN  TY  ++ GLC++G  
Sbjct: 182 VEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRW 241

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             A   +  M   +  PNV TY+ L+  F   G++    E+FE+M      P++ TY+ L
Sbjct: 242 NDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSL 301

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           I+ + +  + D+   A ++   MV +G  P   ++N ++NG 
Sbjct: 302 INGLCLHDRIDE---ANQMFDLMVSKGCFPDVVSYNTLINGF 340



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 153/333 (45%), Gaps = 4/333 (1%)

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIAN 215
           A+ +F  M +     S+  FN +L  + K KK +   +L K       + D+ ++N++ N
Sbjct: 69  AINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVIN 128

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
            +C   + + AL VL +M+  G  P+  T   ++ G+ R  ++ +A     +M +     
Sbjct: 129 CFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRP 188

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
           D+V Y  I+        +  A + F  +   G+ P+V TY A++  LC      +A  + 
Sbjct: 189 DIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLL 248

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
            +M+ +   PN  TY+ ++      G++  A E    M     +P++ TY+ LI   C  
Sbjct: 249 RDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLH 308

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
             I+   ++F+ M S  C P++ +YN LI+     K+ +D +   KL  +M  RG +   
Sbjct: 309 DRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGM---KLFRKMSQRGLVNNT 365

Query: 456 FTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            T+N ++ G   +G+   A+E        G  P
Sbjct: 366 VTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSP 398


>gi|356557306|ref|XP_003546958.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Glycine max]
          Length = 654

 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 115/413 (27%), Positives = 206/413 (49%), Gaps = 10/413 (2%)

Query: 69  PQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHR 128
           P L ++++ R  +    A  F++  S    +     ++   I + +R+R +  VW L+  
Sbjct: 122 PGLTERVLSRCGDAGNLAYRFYSWASKQSGHRLDHDAYKAMIKVLSRMRQFGAVWALIEE 181

Query: 129 MKSLSLGP---TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185
           M+  +  P   T + F I+  R+ SA    +AV++   M ++GC      F  +LD LCK
Sbjct: 182 MRQEN--PHLITPQVFVILMRRFASARMVHKAVEVLDEMPKYGCEPDEYVFGCLLDALCK 239

Query: 186 EKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
              V++A +LF+  R ++K  V  +  +  GWC   +  +A  VL +M D G+ P++  Y
Sbjct: 240 NGSVKEAASLFEDMRYRWKPSVKHFTSLLYGWCKEGKLMEAKHVLVQMKDMGIEPDIVVY 299

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           N +L GY +AG++ +A+    EM++++CE +  +YT ++        ++ A  +F  M  
Sbjct: 300 NNLLGGYAQAGKMGDAYDLLKEMRRKRCEPNATSYTVLIQSLCKHERLEEATRLFVEMQT 359

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G    V TY+ +I   CK   ++    + +EM+ +G+ PN   Y  ++       E+E 
Sbjct: 360 NGCQADVVTYSTLISGFCKWGKIKRGYELLDEMIQQGHFPNQVIYQHIMLAHEKKEELEE 419

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
             E V  M+   C P++  YN +IR  C  GE++ G++L+ +M S    P +DT+ I+I+
Sbjct: 420 CKELVNEMQKIGCAPDLSIYNTVIRLACKLGEVKEGIQLWNEMESSGLSPGMDTFVIMIN 479

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFM--PRKFTFNRVLNGLLLIGNQGLAKE 476
                 +   L+ A +   EMV RG    P+  T   ++N LL      +AK+
Sbjct: 480 GFL---EQGCLVEACEYFKEMVGRGLFTAPQYGTLKELMNSLLRAEKLEMAKD 529



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 110/248 (44%), Gaps = 5/248 (2%)

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE-IDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            Y  ++K   R  Q    W    EM++     I    +  ++  F     + +A  V D 
Sbjct: 158 AYKAMIKVLSRMRQFGAVWALIEEMRQENPHLITPQVFVILMRRFASARMVHKAVEVLDE 217

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M   G  P    +  ++  LCK  SV+ A  +FE+M  + + P+   +  ++ G C  G+
Sbjct: 218 MPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRYR-WKPSVKHFTSLLYGWCKEGK 276

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           +  A   + +MKD   EP++  YN L+  +  AG++    +L ++M    C PN  +Y +
Sbjct: 277 LMEAKHVLVQMKDMGIEPDIVVYNNLLGGYAQAGKMGDAYDLLKEMRRKRCEPNATSYTV 336

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           LI S+    K + L  A +L +EM   G      T++ +++G    G      E+L    
Sbjct: 337 LIQSLC---KHERLEEATRLFVEMQTNGCQADVVTYSTLISGFCKWGKIKRGYELLDEMI 393

Query: 483 RCGRLPRQ 490
           + G  P Q
Sbjct: 394 QQGHFPNQ 401


>gi|357442157|ref|XP_003591356.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480404|gb|AES61607.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 518

 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 121/429 (28%), Positives = 219/429 (51%), Gaps = 14/429 (3%)

Query: 39  DPAALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRL-WNHAL--KALHFFNILSY 95
           D   + +++ T++ P TL Q+L    +  + +L+DQ++KR+ + HA   + L FF     
Sbjct: 27  DVHKVYTILTTTSSPETLKQSLKSTQIFLSNELIDQVLKRVRFGHANPNQTLEFFRYTGR 86

Query: 96  HPTYAHSPSSFDHAIDLAARLRDYRTVWTLV--HRMKSLSLGPTQKTFAIIAERYVSAGK 153
              + H+  S D  + +  R R +  VW L+   R K  ++  T +T  ++  R      
Sbjct: 87  RKGFYHTAYSLDTMLYILGRSRMFDHVWELLIEARRKDQNV-ITPRTVMVVLGRVAKVCS 145

Query: 154 ADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVI 213
             + V+ F    +      +N FN +L  LC+EK +  A N++   +  F+ ++ ++N++
Sbjct: 146 VRQTVETFRKFKKIVPDYGVNCFNALLRTLCQEKSMTDARNVYHSLKHNFRPNLQTFNIL 205

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
            +GW   K    A   + EM + G+ P++ TYN ++  Y +  +IE+A++ F EM+++  
Sbjct: 206 LSGW---KNVEDAELFVNEMKEMGVEPDVVTYNSLVDVYCKGREIEKAYKVFDEMREKDL 262

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
             DV+TYT+++ G G+VG+  +AR+V   M   GV P V  YNA I+  C    +  A  
Sbjct: 263 SPDVITYTSVIGGLGLVGQPDKARDVLKEMKEYGVYPDVPAYNAAIRNYCIAKRLGIAFE 322

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           + +EMV KG  PN+TTYN+  R    + +++ +     RM  + C P  Q+   LIR F 
Sbjct: 323 LVDEMVNKGLSPNATTYNLFFRVFYWSNDLQSSWNLYKRMMGEGCLPYTQSCMFLIRLFK 382

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF-VRKKSDDLLVAGKLLIEMVDRGFM 452
              ++E  L+L+ +M          +Y ++   +F +      L+ A K  +EM+++G  
Sbjct: 383 RHEKMEMALQLWGEMVE----KGFGSYTLVSDVLFDMLCDMGKLMEAEKCFLEMIEKGQR 438

Query: 453 PRKFTFNRV 461
           P   +F R+
Sbjct: 439 PSNVSFKRI 447


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 181/344 (52%), Gaps = 5/344 (1%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID   + +     + L   M S  + P   T++ +   + + G+   A+ +F  M     
Sbjct: 204 IDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENI 263

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALE 228
           +  + +FN ++D  CK+ K+++   +F +  +   K +V++Y  + +G+CLVK  NKA  
Sbjct: 264 KPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKS 323

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           +L  M  RG+NP++ +YNI++ G+ +  +++EA   F EM  +    DVVTY +++ G  
Sbjct: 324 ILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLC 383

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
            +G+I  A  + D M + GV P + TY++++  LCK   V+ AI +  ++  +G  PN  
Sbjct: 384 KLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMY 443

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           TY ++I GLC  G +E A      +        V TY ++I  FC+ G  +  L L  KM
Sbjct: 444 TYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKM 503

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
               C+P+  TY I+I S+F + ++D      + L EM+ RG +
Sbjct: 504 KDNSCIPDAVTYEIIIRSLFDKDEND----KAEKLREMITRGLL 543



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 173/309 (55%), Gaps = 7/309 (2%)

Query: 176 FNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           ++TI+D +CK+K V  A++L+     K    +V++Y+ + +G+  V +   A+++  +M+
Sbjct: 200 YSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMI 259

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
              + P++ T+NI++ G+ + G+++E    F  M K+  + +VVTY +++ G+ +V E+ 
Sbjct: 260 LENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVN 319

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
           +A+++   M   GV P + +YN +I   CK   V+ A+ +F+EM  K  +P+  TYN +I
Sbjct: 320 KAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLI 379

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
            GLC  G++  AL+ V  M D    P++ TY+ ++   C   ++++ + L  K+      
Sbjct: 380 DGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIR 439

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           PN+ TY ILI  +    + +D   A  +  +++ +G+     T+  +++G     N+GL 
Sbjct: 440 PNMYTYTILIDGLCKGGRLED---AHNIFEDLLVKGYNITVNTYTVMIHGFC---NKGLF 493

Query: 475 KEILRLQSR 483
            E L L S+
Sbjct: 494 DEALALLSK 502



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 188/392 (47%), Gaps = 36/392 (9%)

Query: 81  NHALKALHFFN-ILSYHPTYAHSPS-SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQ 138
           N  + A   F+ +L  +PT    P+  F+  +    + + Y TV +L  +M+   + P  
Sbjct: 55  NDVVDAFSLFSRLLRQNPT---PPAIEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPV- 110

Query: 139 KTFAIIAERYVSAGKADRAVKIFLSMHEH---GCRQSLNSFNTILDLLCKEKKVEKAYNL 195
                                +F   H H   G   +  +F T++  LC + ++ +A  L
Sbjct: 111 ---------------------LFHFQHPHQLMGYHPNTITFTTLIKGLCLKGQIHQAL-L 148

Query: 196 F--KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
           F   V    F+ D + Y  + +G C V  T  AL++L+ +    + PN+  Y+ ++ G  
Sbjct: 149 FHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMC 208

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
           +   + +A+  + EM  +    +VVTY+ ++ GF  VG++K A ++F+ M+   + P V 
Sbjct: 209 KDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVY 268

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           T+N ++   CK   ++    VF  M+ +G  PN  TY  ++ G C   E+ +A   +  M
Sbjct: 269 TFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTM 328

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
                 P++Q+YNILI  FC   +++  + LF++M     +P++ TYN LI  +    K 
Sbjct: 329 SQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLC---KL 385

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
             +  A KL+ EM DRG  P   T++ +L+ L
Sbjct: 386 GKISYALKLVDEMHDRGVPPDIITYSSILDAL 417



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 104/241 (43%), Gaps = 35/241 (14%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
            S++  ID   +++       L   M    + P   T+  + +     GK   A+K+   
Sbjct: 338 QSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDE 397

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRT 223
           MH+ G    + ++++ILD LCK  +V+KA                               
Sbjct: 398 MHDRGVPPDIITYSSILDALCKNHQVDKA------------------------------- 426

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
              + +L ++ D+G+ PN+ TY I++ G  + G++E+A   F ++  +   I V TYT +
Sbjct: 427 ---IALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVM 483

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +HGF   G    A  +   M +   +P   TY  +I+ L  KD  + A     EM+ +G 
Sbjct: 484 IHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEIIIRSLFDKDENDKA-EKLREMITRGL 542

Query: 344 M 344
           +
Sbjct: 543 L 543


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 119/384 (30%), Positives = 194/384 (50%), Gaps = 8/384 (2%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII 144
           +AL F   +S    +     +F+  ++  ++    +    ++  M      P   T+  +
Sbjct: 283 EALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSL 342

Query: 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-F 203
                  G+ D AVK+   M E  C  +  ++NTI+  LCKE +VE+A  L  V  GK  
Sbjct: 343 ISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGI 402

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
             DV +YN +  G CL +    A+E+ KEM  +G +P+  TYN+++      G+++EA  
Sbjct: 403 LPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALN 462

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
              EM+   C  +V+TY T++ GF     I  A  +FD M   GV  +  TYN +I  LC
Sbjct: 463 LLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLC 522

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
           K + VE A  + ++M+ +G  P+  TYN ++   C  G++++A + V  M  D CEP++ 
Sbjct: 523 KSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIV 582

Query: 384 TYNILIRYFCDAGEIERGLELFEKMG-SGVCL-PNLDTYNILISSMFVRKKSDDLLVAGK 441
           TY  LI   C AG +E   +L   +   G+ L P+   YN +I ++F RK+S +   A +
Sbjct: 583 TYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPH--AYNPVIQALFRRKRSKE---AVR 637

Query: 442 LLIEMVDRGFMPRKFTFNRVLNGL 465
           L  EM+++   P   T+  V  GL
Sbjct: 638 LFREMIEKAEAPDAVTYKIVFRGL 661



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/387 (30%), Positives = 197/387 (50%), Gaps = 5/387 (1%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           S+F+  I    R    R    L+  M+   L P +KTF  I + ++  G  D A+++   
Sbjct: 196 STFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQ 255

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVK 221
           M E GC  +  + N +++  CKE ++E+A    +    R  F  D  ++N++ NG     
Sbjct: 256 MVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTG 315

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
               ALEV+  M+  G +P++ TYN ++ G  + G+++EA +   +M +R C  + VTY 
Sbjct: 316 HVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYN 375

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
           TI+       +++ A  +   +   G+LP V TYN++IQ LC   +   A+ +++EM  K
Sbjct: 376 TIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTK 435

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
           G  P+  TYN++I  LC  G+++ AL  +  M+   C  NV TYN LI  FC    I   
Sbjct: 436 GCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEA 495

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
            E+F++M       N  TYN LI  +    KS+ +  A +L+ +M+  G  P KFT+N +
Sbjct: 496 EEIFDQMELQGVSRNSVTYNTLIDGLC---KSERVEEASQLMDQMIMEGLRPDKFTYNSL 552

Query: 462 LNGLLLIGNQGLAKEILRLQSRCGRLP 488
           L      G+   A +I++  +  G  P
Sbjct: 553 LTYFCKAGDIKKAADIVQTMASDGCEP 579



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 127/462 (27%), Positives = 228/462 (49%), Gaps = 18/462 (3%)

Query: 36  AAADPAALASLILTSTDPRTLTQTLHCP---SLHWTPQLVDQIIKRLWNHALKALHFFNI 92
           A+  P + ++L   +T+   LT T +     S ++TP  +   ++R  + +   +H F  
Sbjct: 20  ASHKPTSNSTLSFATTNHEPLTTTTNSATRLSPNFTPTQLLHSLRREEDSS-AVIHLFYW 78

Query: 93  LSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMK-SLSLGPTQKTFAIIAERYVSA 151
            S  P +  S S F   +    +  ++  +  ++  MK SLS+         I E Y S 
Sbjct: 79  ASKQPNFKPSSSIFKEVLHKLGKAGEFDAMKDILKEMKISLSVIDNDSLLVFI-ESYASF 137

Query: 152 GKADRAVKIFLSMH-EHGCRQSLNSFNTILDLLC---KEKKVEKAYNLFKVFRGKFKADV 207
           G  +  ++   +M  E G   + + +N +L++L    K K VE A++   V RG  + DV
Sbjct: 138 GLYNEILQFVDAMEVEFGVVANTHFYNFLLNVLVDGNKLKLVEIAHSNM-VSRG-IRPDV 195

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
            ++N++    C   +   A+ +++EM D GL P+  T+  +++G+   G ++ A R   +
Sbjct: 196 STFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQ 255

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM-VNGGVLPSVATYNAMIQVLCKKD 326
           M +  C +  VT   +V+GF   G I+ A    + M +  G  P   T+N ++  L K  
Sbjct: 256 MVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTG 315

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            V++A+ V + M+ +G+ P+  TYN +I GLC  GE++ A++ + +M + +C PN  TYN
Sbjct: 316 HVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYN 375

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            +I   C   ++E   +L   +     LP++ TYN LI  + +   S +  VA +L  EM
Sbjct: 376 TIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCL---SRNHTVAMELYKEM 432

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ--SRCGR 486
             +G  P +FT+N +++ L   G    A  +L+    S C R
Sbjct: 433 KTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCAR 474



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 141/274 (51%), Gaps = 2/274 (0%)

Query: 117 RDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSF 176
           R++     L   MK+    P + T+ ++ +     GK   A+ +   M   GC +++ ++
Sbjct: 420 RNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITY 479

Query: 177 NTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235
           NT++D  CK K++ +A  +F     +    + ++YN + +G C  +R  +A +++ +M+ 
Sbjct: 480 NTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIM 539

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
            GL P+  TYN +L  + +AG I++A      M    CE D+VTY T++ G    G ++ 
Sbjct: 540 EGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEA 599

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
           A  +   +   G+  +   YN +IQ L ++   + A+ +F EM+ K   P++ TY +V R
Sbjct: 600 ATKLLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFR 659

Query: 356 GLCH-TGEMERALEFVGRMKDDECEPNVQTYNIL 388
           GLC   G +  A++FV  M +    P   ++ +L
Sbjct: 660 GLCQGGGPIGEAVDFVMEMLERGYVPEFSSFYML 693



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 146/307 (47%), Gaps = 9/307 (2%)

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIAN 215
           A++++  M   GC     ++N ++D LC   K+++A NL K       A +VI+YN + +
Sbjct: 425 AMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLID 484

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
           G+C  KR  +A E+  +M  +G++ N  TYN ++ G  ++ ++EEA +   +M       
Sbjct: 485 GFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRP 544

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
           D  TY +++  F   G+IK+A ++   M + G  P + TY  +I  LCK   VE A  + 
Sbjct: 545 DKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLL 604

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD- 394
             +  KG       YN VI+ L      + A+     M +    P+  TY I+ R  C  
Sbjct: 605 RTIQMKGINLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFRGLCQG 664

Query: 395 AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
            G I   ++   +M     +P   ++ +L   +F       L + G  LI+++D      
Sbjct: 665 GGPIGEAVDFVMEMLERGYVPEFSSFYMLAEGLF------SLAMVGT-LIKLIDMVMEKA 717

Query: 455 KFTFNRV 461
           KF+ N V
Sbjct: 718 KFSDNEV 724


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 110/366 (30%), Positives = 189/366 (51%), Gaps = 4/366 (1%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            L+ RM +    P   T+  +       G  D A+ +   M +     ++  +NTI+D L
Sbjct: 207 ALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGL 266

Query: 184 CKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CK K ++ A++LF     K  K DV +YN + +  C   R + A  +L +M++R +NPN+
Sbjct: 267 CKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNV 326

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            T+N ++  + + G++ EA + F EM +R  + ++VTY ++++GF +   +  A+ +F  
Sbjct: 327 VTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTL 386

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           MV+   LP V TYN +I+  CK   VE  + +F EM  +G + N+ TYN +I+GL   G+
Sbjct: 387 MVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGD 446

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
            + A +   +M  D   P++ TY+IL+   C  G++E+ L +FE +      PN+ TYNI
Sbjct: 447 CDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNI 506

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           +I  M    K +D      L   +  +G  P    +  +++G    G +  A  + R   
Sbjct: 507 MIEGMCKAGKVED---GWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMK 563

Query: 483 RCGRLP 488
             G LP
Sbjct: 564 EDGTLP 569



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 103/361 (28%), Positives = 185/361 (51%), Gaps = 4/361 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           ++  ID   + +     + L ++M++  + P   T+  +     + G+   A ++   M 
Sbjct: 259 YNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMI 318

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTN 224
           E     ++ +FN+++D   KE K+ +A  LF ++ +     ++++YN + NG+C+  R +
Sbjct: 319 ERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLD 378

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           +A ++   MV +   P++ TYN ++KG+ +A ++EE    F EM +R    + VTY T++
Sbjct: 379 EAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLI 438

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            G    G+   A+ +F  MV+ GV P + TY+ ++  LCK   +E A++VFE +      
Sbjct: 439 QGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKME 498

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           PN  TYN++I G+C  G++E   +    +     +PNV  Y  +I  FC  G  E    L
Sbjct: 499 PNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADAL 558

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           F +M     LP+   YN LI +   R +  D   + +L+ EM   GF+    T + V+N 
Sbjct: 559 FREMKEDGTLPDSGCYNTLIRA---RLRDGDKAASAELIKEMRSCGFVGDASTISMVINM 615

Query: 465 L 465
           L
Sbjct: 616 L 616



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 172/351 (49%), Gaps = 4/351 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P+   F+ +        K D  + +   M   G   +  +++ +L+  C+  ++  A  +
Sbjct: 79  PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILLNCFCRRSQLPLALAV 138

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             K+ +  ++ D+++ + + NG+C  KR ++A+ ++ +MV+ G  P+  T+N ++ G F 
Sbjct: 139 LGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFL 198

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
             +  EA      M  R C+ D+ TY T+V+G    G+I  A ++   M  G +  +V  
Sbjct: 199 HNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVI 258

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN +I  LCK   +++A  +F +M  KG  P+  TYN +I  LC+ G    A   +  M 
Sbjct: 259 YNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMI 318

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
           + +  PNV T+N LI  F   G++    +LF++M      PN+ TYN LI+   +  + D
Sbjct: 319 ERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLD 378

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
           +   A ++   MV +  +P   T+N ++ G           E+ R  S+ G
Sbjct: 379 E---AQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRG 426



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 142/297 (47%), Gaps = 2/297 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  ID  A+         L   M   S+ P   T+  +   +    + D A +IF  M
Sbjct: 328 TFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLM 387

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
               C   + ++NT++   CK K+VE+   LF+    +    + ++YN +  G       
Sbjct: 388 VSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDC 447

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A ++ K+MV  G+ P++ TY+I+L G  + G++E+A   F  ++K K E ++ TY  +
Sbjct: 448 DMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIM 507

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G    G+++   ++F  +   GV P+V  Y  MI   C+K   E A  +F EM   G 
Sbjct: 508 IEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGT 567

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           +P+S  YN +IR     G+   + E +  M+      +  T +++I    D G +E+
Sbjct: 568 LPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHD-GRLEK 623



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 109/257 (42%), Gaps = 38/257 (14%)

Query: 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
           ++++A   F EM K +    ++ ++ ++     + +     ++ + M N G+  +  TY+
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 120

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM--- 373
            ++   C++  +  A+ V  +M+  GY P+  T + ++ G CH   +  A+  V +M   
Sbjct: 121 ILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEM 180

Query: 374 --KDDE------------------------------CEPNVQTYNILIRYFCDAGEIERG 401
             K D                               C+P++ TY  ++   C  G+I+  
Sbjct: 181 GYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 240

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
           L L +KM  G    N+  YN +I  +   K  DD   A  L  +M  +G  P  FT+N +
Sbjct: 241 LSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDD---AFDLFNKMETKGIKPDVFTYNSL 297

Query: 462 LNGLLLIGNQGLAKEIL 478
           ++ L   G    A  +L
Sbjct: 298 ISCLCNYGRWSDASRLL 314


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 115/334 (34%), Positives = 176/334 (52%), Gaps = 6/334 (1%)

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF--KVFRGKFKADVISYNVIA 214
           A ++F    E G   +  S+N IL LLC+  KV++A++L     FRG    DV+SY+VI 
Sbjct: 236 AFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNV-PDVVSYSVIV 294

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
           +G+C V++  K L++++E+  +GL PN  TYN ++    + G++ EA +    MK ++  
Sbjct: 295 DGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIF 354

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
            D V YTT++ GFG  G +     +FD M    ++P   TY +MI  LC+   V  A  +
Sbjct: 355 PDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKL 414

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
           F EM+ KG  P+  TY  +I G C  GEM+ A     +M +    PNV TY  L+   C 
Sbjct: 415 FSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCK 474

Query: 395 AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
            GE++   EL  +M      PN+ TYN LI+ +    K  ++  A KL+ EM   GF P 
Sbjct: 475 CGEVDIANELLHEMSEKGLQPNVCTYNALINGLC---KVGNIEQAVKLMEEMDLAGFFPD 531

Query: 455 KFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             T+  +++    +G    A E+LR+    G  P
Sbjct: 532 TITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQP 565



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 192/385 (49%), Gaps = 4/385 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S++  + L  +L   +   +L+ +M+     P   ++++I + Y    +  + +K+   +
Sbjct: 254 SYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEEL 313

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRT 223
              G + +  ++N+I+  LCK  +V +A  + +V +  +   D + Y  + +G+      
Sbjct: 314 QRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNV 373

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           +   ++  EM  + + P+  TY  ++ G  +AG++ EA + F EM  +  + D VTYT +
Sbjct: 374 SVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTAL 433

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G+   GE+K A ++ + MV  G+ P+V TY A++  LCK   V+ A  +  EM  KG 
Sbjct: 434 IDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGL 493

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN  TYN +I GLC  G +E+A++ +  M      P+  TY  ++  +C  GE+ +  E
Sbjct: 494 QPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHE 553

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           L   M      P + T+N+L++   +    +D     +L+  M+D+G MP   TFN ++ 
Sbjct: 554 LLRIMLDKGLQPTIVTFNVLMNGFCMSGMLED---GERLIKWMLDKGIMPNATTFNSLMK 610

Query: 464 GLLLIGNQGLAKEILRLQSRCGRLP 488
              +  N     EI +     G +P
Sbjct: 611 QYCIRNNMRATIEIYKGMHAQGVVP 635



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 101/361 (27%), Positives = 178/361 (49%), Gaps = 4/361 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S+   +D   ++     V  L+  ++   L P Q T+  I       G+   A ++   M
Sbjct: 289 SYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVM 348

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
                      + T++    K   V   Y LF ++ R K   D ++Y  + +G C   + 
Sbjct: 349 KNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKV 408

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A ++  EM+ +GL P+  TY  ++ GY +AG+++EA+    +M ++    +VVTYT +
Sbjct: 409 VEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTAL 468

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           V G    GE+  A  +   M   G+ P+V TYNA+I  LCK  ++E A+ + EEM   G+
Sbjct: 469 VDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGF 528

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P++ TY  ++   C  GEM +A E +  M D   +P + T+N+L+  FC +G +E G  
Sbjct: 529 FPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGER 588

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           L + M     +PN  T+N L+    +R   +++    ++   M  +G +P   T+N ++ 
Sbjct: 589 LIKWMLDKGIMPNATTFNSLMKQYCIR---NNMRATIEIYKGMHAQGVVPDTNTYNILIK 645

Query: 464 G 464
           G
Sbjct: 646 G 646



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 168/338 (49%), Gaps = 4/338 (1%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           + L   MK   + P   T+  +      AGK   A K+F  M   G +    ++  ++D 
Sbjct: 377 YKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDG 436

Query: 183 LCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
            CK  ++++A++L  ++       +V++Y  + +G C     + A E+L EM ++GL PN
Sbjct: 437 YCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPN 496

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           + TYN ++ G  + G IE+A +   EM       D +TYTTI+  +  +GE+ +A  +  
Sbjct: 497 VCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLR 556

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M++ G+ P++ T+N ++   C    +E+   + + M+ KG MPN+TT+N +++  C   
Sbjct: 557 IMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRN 616

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
            M   +E    M      P+  TYNILI+  C A  ++    L ++M          +YN
Sbjct: 617 NMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYN 676

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
            LI   + RKK ++   A KL  EM   GF+  K  ++
Sbjct: 677 SLIKGFYKRKKFEE---ARKLFEEMRTHGFIAEKEIYD 711



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 164/323 (50%), Gaps = 4/323 (1%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           +S  H +  A ++ + R +++    M S  L P + T+  + + Y  AG+   A  +   
Sbjct: 396 TSMIHGLCQAGKVVEARKLFS---EMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQ 452

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKR 222
           M E G   ++ ++  ++D LCK  +V+ A  L      K  + +V +YN + NG C V  
Sbjct: 453 MVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGN 512

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
             +A+++++EM   G  P+  TY  ++  Y + G++ +A      M  +  +  +VT+  
Sbjct: 513 IEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNV 572

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           +++GF + G ++    +   M++ G++P+  T+N++++  C ++++   I +++ M  +G
Sbjct: 573 LMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQG 632

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
            +P++ TYN++I+G C    M+ A      M +        +YN LI+ F    + E   
Sbjct: 633 VVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEAR 692

Query: 403 ELFEKMGSGVCLPNLDTYNILIS 425
           +LFE+M +   +   + Y+I + 
Sbjct: 693 KLFEEMRTHGFIAEKEIYDIFVD 715



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 149/301 (49%), Gaps = 1/301 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   ID   +  + +  ++L ++M    L P   T+  + +     G+ D A ++   M
Sbjct: 429 TYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEM 488

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRT 223
            E G + ++ ++N +++ LCK   +E+A  L +      F  D I+Y  I + +C +   
Sbjct: 489 SEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEM 548

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            KA E+L+ M+D+GL P + T+N+++ G+  +G +E+  R    M  +    +  T+ ++
Sbjct: 549 AKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSL 608

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +  + +   ++    ++ GM   GV+P   TYN +I+  CK  +++ A  + +EMV KG+
Sbjct: 609 MKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGF 668

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
              + +YN +I+G     + E A +    M+        + Y+I +    + G  E  LE
Sbjct: 669 SLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIYDIFVDVNYEEGNWENTLE 728

Query: 404 L 404
           L
Sbjct: 729 L 729



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 166/366 (45%), Gaps = 21/366 (5%)

Query: 107 DHAIDLAARLRD-YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           DH I +   +RD Y+ V       + L   P+ ++  I+ +  V++     A ++     
Sbjct: 94  DHLIWVLMSIRDDYKLVLDFFDWAR-LRRDPSLESLCIVVQIAVASKDLRMAHRLVFEFW 152

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNL-FKVFRGKFKADVISYNVIANGWCLVKRTN 224
           E       NSF+   + L    K   A+ L F VF          + V+     L++   
Sbjct: 153 EKPHLDVGNSFDRFTERLIYTYKDWGAHPLVFDVF----------FQVLVEAGLLLE--- 199

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRA-GQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            A ++  ++++ G+  ++ + N+ L     +   I  A+R F E  +     + V+Y  I
Sbjct: 200 -AGKLFDKLLNYGVLVSVDSCNLFLARLSNSFDGIRTAFRVFREYSEVGVCWNTVSYNII 258

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +H    +G++K A ++   M   G +P V +Y+ ++   C+ + +   + + EE+  KG 
Sbjct: 259 LHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGL 318

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN  TYN +I  LC TG +  A + +  MK+    P+   Y  LI  F  +G +    +
Sbjct: 319 KPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYK 378

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           LF++M     +P+  TY  +I  +    ++  ++ A KL  EM+ +G  P + T+  +++
Sbjct: 379 LFDEMKRKKIVPDFVTYTSMIHGLC---QAGKVVEARKLFSEMLSKGLKPDEVTYTALID 435

Query: 464 GLLLIG 469
           G    G
Sbjct: 436 GYCKAG 441



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 113/253 (44%), Gaps = 36/253 (14%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+H M    L P   T+  +       G  ++AVK+   M   G      ++ TI+D  C
Sbjct: 484 LLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYC 543

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  ++ KA+ L ++   K  +  ++++NV+ NG+C+         ++K M+D+G+ PN T
Sbjct: 544 KMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNAT 603

Query: 244 T-----------------------------------YNIVLKGYFRAGQIEEAWRFFLEM 268
           T                                   YNI++KG+ +A  ++EAW    EM
Sbjct: 604 TFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEM 663

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
            ++   +   +Y +++ GF    + + AR +F+ M   G +     Y+  + V  ++ + 
Sbjct: 664 VEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIYDIFVDVNYEEGNW 723

Query: 329 ENAILVFEEMVGK 341
           EN + + +E + K
Sbjct: 724 ENTLELCDEAIEK 736


>gi|255548349|ref|XP_002515231.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545711|gb|EEF47215.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 505

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 121/443 (27%), Positives = 225/443 (50%), Gaps = 21/443 (4%)

Query: 27  TTSPAPLPPAAADPAALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRL-WNHA-- 83
           +T+P  L     D   +  +I +S+  + L Q+L    +  +  L+D+++KR+ ++H   
Sbjct: 29  STNPTSL---NDDVEVVYRIITSSSSVQNLKQSLTSTGIFLSNDLIDKVLKRVRFSHGNP 85

Query: 84  LKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKS---LSLGPTQKT 140
           L+AL FF        + H+P S D  + +  R R +  +W ++ +MK      + P  +T
Sbjct: 86  LQALEFFYYTDNRKGFYHTPYSLDTILYILGRSRKFDHIWDVLIKMKRKDRFLISP--RT 143

Query: 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR 200
             I+  R        + V+ F    +         FN +L  LC+EK +  A N++   +
Sbjct: 144 MQIVLARVAKLCSVRQTVESFRKFKKFVSVLDTTCFNALLRTLCQEKSMTDARNVYHRLK 203

Query: 201 GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
            +FK ++ ++N++ +GW   K++ +A    +EM + G+ P++ +YN ++  Y +  ++E+
Sbjct: 204 KEFKPNLQTFNILLSGW---KQSEEAELFFEEMRELGIKPDVVSYNSLIDVYCKDREMEK 260

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
           A++   +M++     DV+TYT+I+ G G+VG+  +AR++ + M   G  P VA YNA+I+
Sbjct: 261 AYKVVEKMREEDISPDVITYTSIIGGLGLVGQPDKARDILNEMKEYGCYPDVAAYNAVIR 320

Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
             C    + +A  + +EM  KG  PN+TTYN+  R    + ++  +     RM +  C P
Sbjct: 321 NYCIAKRLGDASNLMDEMASKGLSPNATTYNLFFRVFYWSNDLRNSWSLYRRMMESGCLP 380

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD--DLLV 438
           N Q+   LIR F    ++E  L L+  M          +Y IL+S +      D   L+ 
Sbjct: 381 NTQSCMFLIRLFRKHEKVEMALTLWNDMVE----KGFGSY-ILVSDVLFDLLCDMGKLVE 435

Query: 439 AGKLLIEMVDRGFMPRKFTFNRV 461
           A K  ++M+++G  P   +F R+
Sbjct: 436 AEKCFLQMIEKGHKPSNVSFRRI 458


>gi|224107985|ref|XP_002314678.1| predicted protein [Populus trichocarpa]
 gi|222863718|gb|EEF00849.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 120/454 (26%), Positives = 224/454 (49%), Gaps = 6/454 (1%)

Query: 30  PAPL--PPAAADPAALASLILTS-TDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKA 86
           P+PL   P  ++   L+ ++    +    + + L+   +  T +LV QI+ R  +H + A
Sbjct: 46  PSPLLFEPQVSNADKLSEILKKRYSSEAAVVKALNESGIDATNELVSQILMRFDSHCVVA 105

Query: 87  LHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAE 146
              F       +Y H+P  +D+ ID+  + + +  +W+LV +MK L+   +  T + +  
Sbjct: 106 FGVFIWAKNQTSYVHTPELYDYMIDILGKFKKFSLMWSLVEQMKGLNGYVSLATASKVMR 165

Query: 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKAD 206
           R   A K   A+ +F  + ++G  +   + N ++D L KE  VE A++ F  F+     D
Sbjct: 166 RLAKARKYKDAIDVFRGIEKYGASKDREALNVLMDALVKEGDVEDAHSAFLEFKDCITLD 225

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
             S+N++ +G+C  +    A ++++EM   G +P++ +Y+  +  Y            F 
Sbjct: 226 SSSFNILIHGYCKARMFVVARKIMEEMEKHGFHPDVVSYSCFIAAYCEQKDFRNVEAVFD 285

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           EM+++ C+ +V+TYTT++H  G   ++  A  V++ M   G LP    Y+++I VL +  
Sbjct: 286 EMQEKGCKPNVITYTTVMHALGKARQLNEALEVYEKMKRNGCLPDSKFYSSLIYVLSQSG 345

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            +++A  VFE+M  +G   N   YN +I   C   +   AL+ + RM+ D C+P+V+TY 
Sbjct: 346 RIKDAWDVFEDMEKQGVCRNLWVYNTMISSACAHSQGGSALKLLERMEGDSCKPDVKTYA 405

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            L++  C    I+    L   M       +L TY +L++  F R  +  L  A     E 
Sbjct: 406 PLLKMCCRRKSIKLLKFLLSHMFKNNVSVDLGTYTLLVNE-FCR--NGKLEHACFYFQEA 462

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           V +G +P   TF  ++  L     + + ++I +L
Sbjct: 463 VLKGMVPMVKTFKALVEELEQKNMKEMKEKIEKL 496


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 106/351 (30%), Positives = 184/351 (52%), Gaps = 5/351 (1%)

Query: 117 RDYRTVWTLVHRMK-SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS 175
           R+    + ++  M+    + P+ KT  ++      +GK   A+  F +   +GC   +++
Sbjct: 108 REPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHT 167

Query: 176 FNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           +  I+D L K KK++ A  L  K+        + +YN + NG C + R  +A+++L+++V
Sbjct: 168 YTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIV 227

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
           D G  P++ TY  ++ G  +  +  EA++ F EM  R   +D V YT ++ G    G+I 
Sbjct: 228 DNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIP 287

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
           +A +V+  M + G +P V T + MI  LCK   +  A+ +F+ M  +G  PN   Y+ +I
Sbjct: 288 QASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALI 347

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
            GLC   +M+ ALE + +MK   C P+  TYNILI   C +G++E     F++M    C 
Sbjct: 348 HGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCK 407

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           P++ TYNIL+S  F +  + D   A  +  +M      P   T+  +++GL
Sbjct: 408 PDVYTYNILVSG-FCKAGNTD--AACGVFDDMSSSHCSPNVVTYGTLISGL 455



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 179/378 (47%), Gaps = 5/378 (1%)

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           + HS  + +  +D+ AR + +R    L+    + +  P  +T+ ++   Y  A + + A 
Sbjct: 55  FQHSVHTGNALLDVFARTKRHREAGNLLKNELATTFLPDVETWNVLITGYCLAREPEEAF 114

Query: 159 KIFLSMHE-HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANG 216
            +   M E +G   SL + N +L  LCK  KV  A + F+         D+ +Y  I + 
Sbjct: 115 AVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDW 174

Query: 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID 276
               K+   A+ +++++   G  P + TYN +L G  + G++EEA     ++    C  D
Sbjct: 175 LAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPD 234

Query: 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE 336
           VVTYT+++ G G       A  +F  M   G++     Y A+I+ L +   +  A  V++
Sbjct: 235 VVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYK 294

Query: 337 EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
            M  +G +P+  T + +I GLC  G +  A+     M+     PN   Y+ LI   C A 
Sbjct: 295 TMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKAR 354

Query: 397 EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
           +++  LE+  +M    C P+  TYNILI  +    KS D+  A     EM++ G  P  +
Sbjct: 355 KMDCALEMLAQMKKAFCTPDTITYNILIDGLC---KSGDVEAARAFFDEMLEAGCKPDVY 411

Query: 457 TFNRVLNGLLLIGNQGLA 474
           T+N +++G    GN   A
Sbjct: 412 TYNILVSGFCKAGNTDAA 429



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/399 (25%), Positives = 184/399 (46%), Gaps = 43/399 (10%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   +D  A+ +  +    L+ ++ +    PT  T+  +       G+ + A+ +   +
Sbjct: 167 TYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKI 226

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK----------------VFRGKFKA--- 205
            ++GC   + ++ +++D L KEK+  +AY LFK                + RG  +A   
Sbjct: 227 VDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKI 286

Query: 206 -----------------DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
                            DV++ + + +G C   R   A+ + K M  RGL PN   Y+ +
Sbjct: 287 PQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSAL 346

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           + G  +A +++ A     +MKK  C  D +TY  ++ G    G+++ AR  FD M+  G 
Sbjct: 347 IHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGC 406

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
            P V TYN ++   CK  + + A  VF++M      PN  TY  +I GLC   ++ +A  
Sbjct: 407 KPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASL 466

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG-SGVCLPNLDTYNILISSM 427
           +   MK+  C P+   Y+ L+   C +G++E G  LF++M  SGV   N  T   LI  +
Sbjct: 467 YFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGV--ANSQTRTRLIFHL 524

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
               + D+ +     L   + +  MP  + +N +++ L+
Sbjct: 525 CKANRVDEAVS----LFNAIRKEGMPHPYAYNSIISTLI 559



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 99/332 (29%), Positives = 169/332 (50%), Gaps = 13/332 (3%)

Query: 154 ADRAVKIF--LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISY 210
           AD A ++F  LS    G + S+++ N +LD+  + K+  +A NL K      F  DV ++
Sbjct: 38  ADLAWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHREAGNLLKNELATTFLPDVETW 97

Query: 211 NVIANGWCLVKRTNKALEVLKEMV-DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           NV+  G+CL +   +A  V++EM  D G+ P+L T+N+VL G  ++G++  A   F    
Sbjct: 98  NVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTT 157

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
              C ID+ TYT IV       +I+ A  + + +   G  P++ATYNA++  LCK   +E
Sbjct: 158 TNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLE 217

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP---NVQTYN 386
            AI +  ++V  G  P+  TY  +I GL   G+ +R+ E     K+        +   Y 
Sbjct: 218 EAIDLLRKIVDNGCTPDVVTYTSLIDGL---GKEKRSFEAYKLFKEMALRGLVLDTVCYT 274

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            LIR    AG+I +   +++ M S  C+P++ T + +I  +    K+  +  A ++   M
Sbjct: 275 ALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLC---KAGRIGAAVRIFKSM 331

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
             RG  P +  ++ +++GL        A E+L
Sbjct: 332 EARGLAPNEVVYSALIHGLCKARKMDCALEML 363



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 149/312 (47%), Gaps = 15/312 (4%)

Query: 187 KKVEKAYNLFKVF---RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  + A+ LF+     R  F+  V + N + + +   KR  +A  +LK  +     P++ 
Sbjct: 36  KDADLAWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHREAGNLLKNELATTFLPDVE 95

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKR-KCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
           T+N+++ GY  A + EEA+    EM++       + T+  ++HG    G++  A + F+ 
Sbjct: 96  TWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFET 155

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
               G    + TY A++  L K   +++A+ + E++   G  P   TYN ++ GLC  G 
Sbjct: 156 TTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGR 215

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE---LFEKMG-SGVCLPNLD 418
           +E A++ + ++ D+ C P+V TY  LI      G+ +R  E   LF++M   G+ L  + 
Sbjct: 216 LEEAIDLLRKIVDNGCTPDVVTYTSLIDGL---GKEKRSFEAYKLFKEMALRGLVLDTV- 271

Query: 419 TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
            Y  LI  +    ++  +  A  +   M  +G +P   T + +++GL   G  G A  I 
Sbjct: 272 CYTALIRGLL---QAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIF 328

Query: 479 RLQSRCGRLPRQ 490
           +     G  P +
Sbjct: 329 KSMEARGLAPNE 340


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/380 (31%), Positives = 192/380 (50%), Gaps = 4/380 (1%)

Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
            H+  S +  I+   RL       +++ +M  L + P   TF  +     + GK   AV+
Sbjct: 125 THNVYSLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVE 184

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWC 218
           +F  M + G   ++ S+ T+++ LCK      A ++FK   +   K +V++Y+ I +  C
Sbjct: 185 LFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLC 244

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
             +  N A+E L EMV+RG+ PN+ TYN ++ G+   GQ+ EA R F EM  R    + V
Sbjct: 245 KDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTV 304

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           T+T +V G    G +  AR VF+ M   GV P ++TYNA++   C +  +  A  VFE M
Sbjct: 305 TFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIM 364

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
           + KG  P + +YN++I G C +  M+ A   +  M      P+  TY+ L++  C  G  
Sbjct: 365 IRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRP 424

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           +  L LF++M S    PNL TY IL+         D+ L   KLL  M ++   P    +
Sbjct: 425 KEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEAL---KLLKSMKEKKLEPNIVHY 481

Query: 459 NRVLNGLLLIGNQGLAKEIL 478
             ++ G+ + G   +AKE+ 
Sbjct: 482 TILIEGMFIAGKLEVAKELF 501



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 178/360 (49%), Gaps = 4/360 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   ID   + R        +  M    + P   T+  I   + + G+ + A ++F  M
Sbjct: 235 TYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEM 294

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
                  +  +F  ++D LCKE  V +A  +F+    K  + D+ +YN + +G+CL +  
Sbjct: 295 VGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLM 354

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           N+A +V + M+ +G  P   +YNI++ GY ++ +++EA     EM  +    D VTY+T+
Sbjct: 355 NEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTL 414

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G   +G  K A N+F  M + G  P++ TY  ++   CK   ++ A+ + + M  K  
Sbjct: 415 MQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKL 474

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN   Y ++I G+   G++E A E   ++  D   P+++TY ++I+     G  +   +
Sbjct: 475 EPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYD 534

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           LF KM     LPN  +YN++I       ++ D   A +L+ EMV + F     TF  +L+
Sbjct: 535 LFRKMEDDGFLPNSCSYNVMIQGFL---QNQDSSTAIRLIDEMVGKRFSVNLSTFQMLLD 591



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 150/339 (44%), Gaps = 45/339 (13%)

Query: 154 ADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK---VEKAYNLFKVFRGKFKADVISY 210
            D A+  F  M     R S+  F   L    K+K+   V    N   +FR     +V S 
Sbjct: 74  VDDALASFYRMVRINPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFR--VTHNVYSL 131

Query: 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
           N++ N  C +   + ++ VL +M   G++P                              
Sbjct: 132 NILINCLCRLNHVDFSVSVLGKMFKLGIHP------------------------------ 161

Query: 271 RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
                D +T+  +++G    G+IK A  +F+ MV  G  P+V +Y  +I  LCK  +   
Sbjct: 162 -----DAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSM 216

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           A+ VF++M   G  PN  TY+ +I  LC    +  A+EF+  M +    PNV TYN ++ 
Sbjct: 217 AVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVH 276

Query: 391 YFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE-MVDR 449
            FC+ G++     LF++M     +PN  T+ IL+  +      + ++   +L+ E M ++
Sbjct: 277 GFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLC----KEGMVSEARLVFETMTEK 332

Query: 450 GFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           G  P   T+N +++G  L      AK++  +  R G  P
Sbjct: 333 GVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAP 371


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 107/366 (29%), Positives = 189/366 (51%), Gaps = 4/366 (1%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            L+ RM +    P   T+ ++       G  D A  +   M +      +  +NTI+D L
Sbjct: 207 ALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGL 266

Query: 184 CKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CK K ++ A NLFK    K  + +V++Y+ + +  C   R + A  +L +M++R +NP++
Sbjct: 267 CKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDV 326

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            T++ ++  + + G++ EA + + EM KR  +  +VTY+++++GF +   +  A+ +F+ 
Sbjct: 327 FTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEF 386

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           MV+    P V TYN +I+  CK   VE  + VF EM  +G + N+ TYN++I+GL   G+
Sbjct: 387 MVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGD 446

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
            + A E    M  D   PN+ TYN L+   C  G++E+ + +FE +      P + TYNI
Sbjct: 447 CDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNI 506

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           +I  M    K +D      L   +  +G  P    +N +++G    G++  A  + +   
Sbjct: 507 MIEGMCKAGKVED---GWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 563

Query: 483 RCGRLP 488
             G LP
Sbjct: 564 EDGTLP 569



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 184/379 (48%), Gaps = 6/379 (1%)

Query: 90  FNILSYHPTYAHSPSS--FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
           FN+L+        P    ++  ID   + +       L   M++  + P   T++ +   
Sbjct: 241 FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISC 300

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKAD 206
             + G+   A ++   M E      + +F+ ++D   KE K+ +A  L+ ++ +      
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 360

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           +++Y+ + NG+C+  R ++A ++ + MV +   P++ TYN ++KG+ +  ++EE    F 
Sbjct: 361 IVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFR 420

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           EM +R    + VTY  ++ G    G+   A+ +F  MV+ GV P++ TYN ++  LCK  
Sbjct: 421 EMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNG 480

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            +E A++VFE +      P   TYN++I G+C  G++E   +    +     +P+V  YN
Sbjct: 481 KLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYN 540

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            +I  FC  G  E    LF++M     LPN   YN LI +   R +  D   + +L+ EM
Sbjct: 541 TMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRA---RLRDGDREASAELIKEM 597

Query: 447 VDRGFMPRKFTFNRVLNGL 465
              GF     T   V N L
Sbjct: 598 RSCGFAGDASTIGLVTNML 616



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 179/380 (47%), Gaps = 39/380 (10%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P+   F+ +        K D  + +   M   G   +  +++ +++  C+  ++  A  +
Sbjct: 79  PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAV 138

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             K+ +  ++ ++++ + + NG+C  KR ++A+ ++ +M   G  PN  T+N ++ G F 
Sbjct: 139 LGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFL 198

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
             +  EA      M  + C+ D+VTY  +V+G    G+   A N+ + M  G + P V  
Sbjct: 199 HNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLI 258

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE-----------M 363
           YN +I  LCK   +++A+ +F+EM  KG  PN  TY+ +I  LC+ G            +
Sbjct: 259 YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 318

Query: 364 ERALE------------FVGRMKDDECE------------PNVQTYNILIRYFCDAGEIE 399
           ER +             FV   K  E E            P++ TY+ LI  FC    ++
Sbjct: 319 ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLD 378

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
              ++FE M S  C P++ TYN LI      K+ ++ +   ++  EM  RG +    T+N
Sbjct: 379 EAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGM---EVFREMSQRGLVGNTVTYN 435

Query: 460 RVLNGLLLIGNQGLAKEILR 479
            ++ GL   G+  +A+EI +
Sbjct: 436 ILIQGLFQAGDCDMAQEIFK 455



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 102/209 (48%), Gaps = 3/209 (1%)

Query: 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
           ++++A   F EM K +    ++ ++ ++     + +     ++ + M N G+  +  TY+
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 120

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
            +I   C++  +  A+ V  +M+  GY PN  T + ++ G CH+  +  A+  V +M   
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
             +PN  T+N LI       +    + L ++M +  C P+L TY ++++ +  R  +D  
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTD-- 238

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            +A  LL +M      P    +N +++GL
Sbjct: 239 -LAFNLLNKMEQGKLEPGVLIYNTIIDGL 266


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 109/361 (30%), Positives = 191/361 (52%), Gaps = 7/361 (1%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           +++ +M  L   P + T   +   +    +   AV +   M E G +  + ++N I+D L
Sbjct: 141 SILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSL 200

Query: 184 CKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CK K+V  A++ FK + R   + +V++Y  + NG C   R + A  +L +M+ + + PN+
Sbjct: 201 CKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNV 260

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TY+ +L  + + G++ EA   F EM +   + D+VTY+++V+G  +   I  A  +FD 
Sbjct: 261 ITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDL 320

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           MV+ G L  V +YN +I   CK   VE+ + +F EM  +G + N+ TYN +I+G    G+
Sbjct: 321 MVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGD 380

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           +++A EF  +M      P++ TYNIL+   CD GE+E+ L +FE M       ++ TY  
Sbjct: 381 VDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTT 440

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           +I  M    K ++   A  L   +  +G  P   T+  +++GL     +GL  E+  L +
Sbjct: 441 VIRGMCKTGKVEE---AWSLFCSLSLKGLKPDIVTYTTMMSGLC---TKGLLHEVEALYT 494

Query: 483 R 483
           +
Sbjct: 495 K 495



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 171/356 (48%), Gaps = 12/356 (3%)

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           Y     +++  ID   + +     +     ++   + P   T+  +     ++ +   A 
Sbjct: 186 YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAA 245

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGW 217
           ++   M +     ++ +++ +LD   K  KV +A  LF+ + R     D+++Y+ + NG 
Sbjct: 246 RLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGL 305

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           CL  R ++A ++   MV +G   ++ +YN ++ G+ +A ++E+  + F EM +R    + 
Sbjct: 306 CLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNT 365

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           VTY T++ GF   G++ +A+  F  M   G+ P + TYN ++  LC    +E A+++FE+
Sbjct: 366 VTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFED 425

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M  +    +  TY  VIRG+C TG++E A      +     +P++ TY  ++   C  G 
Sbjct: 426 MQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGL 485

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
           +     L+ KM     + N  T +             D+ ++ +L+ +M+  G+ P
Sbjct: 486 LHEVEALYTKMKQEGLMKNDCTLS-----------DGDITLSAELIKKMLSCGYAP 530



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 153/325 (47%), Gaps = 4/325 (1%)

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYN 211
           K + A+ +F  M +     S+  FN +L  + K KK +   +L K       + D+ ++N
Sbjct: 65  KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
           ++ N +C   + + AL +L +M+  G  P+  T   ++ G+ R  ++ +A     +M + 
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
             + D+V Y  I+        +  A + F  +   G+ P+V TY A++  LC      +A
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA 244

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
             +  +M+ K   PN  TY+ ++      G++  A E    M     +P++ TY+ L+  
Sbjct: 245 ARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNG 304

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
            C    I+   ++F+ M S  CL ++ +YN LI+     K+ +D +   KL  EM  RG 
Sbjct: 305 LCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGM---KLFREMSQRGL 361

Query: 452 MPRKFTFNRVLNGLLLIGNQGLAKE 476
           +    T+N ++ G    G+   A+E
Sbjct: 362 VSNTVTYNTLIQGFFQAGDVDKAQE 386



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 142/282 (50%), Gaps = 4/282 (1%)

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           ++ K+  A +LF  + + +    ++ +N + +    +K+ +  + + K+M   G+  +L 
Sbjct: 62  RDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLY 121

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           T+NIV+  +    Q+  A     +M K   E D VT  ++V+GF     +  A ++ D M
Sbjct: 122 TFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM 181

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           V  G  P +  YNA+I  LCK   V +A   F+E+  KG  PN  TY  ++ GLC++   
Sbjct: 182 VEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRW 241

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             A   +  M   +  PNV TY+ L+  F   G++    ELFE+M      P++ TY+ L
Sbjct: 242 SDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSL 301

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           ++ + +  + D+   A ++   MV +G +    ++N ++NG 
Sbjct: 302 VNGLCLHDRIDE---ANQMFDLMVSKGCLADVVSYNTLINGF 340


>gi|357480939|ref|XP_003610755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512090|gb|AES93713.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 596

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 110/402 (27%), Positives = 200/402 (49%), Gaps = 3/402 (0%)

Query: 56  LTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAAR 115
           + Q L       +  LV Q++KR  N  + A  FF        Y HSP  ++  +D+  +
Sbjct: 164 VVQALDGSGFRVSNSLVMQVLKRFGNDWVAAYGFFIWAKKQTPYVHSPEVYNLMVDILGK 223

Query: 116 LRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS 175
            +++  +W LV  MK +       T + +  R+  A + + AV+ F  M ++G  +   +
Sbjct: 224 AKEFDLMWKLVKEMKRIEGYVCLDTMSKVMRRFAKAQRHEDAVEAFRGMGKYGVEKDTAA 283

Query: 176 FNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235
            N +LD L K + +E A+N+   F+        S+N++ NGWC V+   KA +V++E  +
Sbjct: 284 LNKLLDALVKGQSIEIAHNVLDEFKSSVPLSSPSFNILINGWCKVRNFEKARKVMEERKE 343

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
            G  P++ TYN  ++ Y       +      EM+   C  + VTYT ++ G+G  G++ +
Sbjct: 344 HGFEPDVFTYNNFIESYCHDKDFRKVDEVLEEMRGNGCPPNAVTYTILLLGYGKAGQLSK 403

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
           A   ++ M   G++P    Y++++ +L K   +++A  VF++M  +G + +  TYN +I 
Sbjct: 404 ALEEYERMKKDGIVPDTPFYSSLMYILGKAGRLKDACEVFDDMPKQGVVRDVVTYNTMIS 463

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
             C   + E AL  +  M++  C+P++QTY+ L++  C    ++    L + M      P
Sbjct: 464 TACAHSKEETALRLLKEMEETSCKPDLQTYHPLLKMCCKKKRMKVLKFLLDHMFKHDLCP 523

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           +  TY +L+ S+     S  L+ A     EMV +GF P + T
Sbjct: 524 DRGTYTLLVQSL---SNSGKLVEACTFFEEMVSKGFTPMETT 562


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 175/327 (53%), Gaps = 4/327 (1%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KV 198
           TF+I+    V AG   +A  +      +GC   ++++ TI+D L K KK+++A  L  K+
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 199 FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
                   + +YN + NG C + R  +A+++L+++VD G  P++ TY  ++ G  +  + 
Sbjct: 61  TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRS 120

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
            EA++ F EM  R   +D V YT ++ G    G+I +A +V+  M + G +P V T + M
Sbjct: 121 FEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTM 180

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           I  LCK   +  A+ +F+ M  +G  PN   Y+ +I GLC   +M+ ALE + +MK   C
Sbjct: 181 IDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFC 240

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
            P+  TYNILI   C +G++      F++M    C P++ TYNILIS  F +  + D   
Sbjct: 241 TPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISG-FCKAGNTD--A 297

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           A  +  +M      P   T+  +++GL
Sbjct: 298 ACGVFDDMSSSRCSPNVVTYGTLISGL 324



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 105/409 (25%), Positives = 188/409 (45%), Gaps = 45/409 (11%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   +D  A+ +  +    L+ ++ +    PT  T+  +       G+ + A+ +   +
Sbjct: 36  TYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKI 95

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK----------------VFRGKFKA--- 205
            ++GC   + ++ +++D L K+K+  +AY LFK                + RG  +A   
Sbjct: 96  VDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKI 155

Query: 206 -----------------DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
                            DV++ + + +G C   R   A+ + K M  RGL PN   Y+ +
Sbjct: 156 PQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSAL 215

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           + G  +A +++ A     +MKK  C  D +TY  ++ G    G++  AR  FD M+  G 
Sbjct: 216 IHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGC 275

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
            P V TYN +I   CK  + + A  VF++M      PN  TY  +I GLC   ++ +A  
Sbjct: 276 KPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASL 335

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG-SGVCLPNLDTYNILISSM 427
           +   MK+  C P+   Y+ L+   C +G++E G  LF++M  SGV   N  T   LI  +
Sbjct: 336 YYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGV--ANSQTRTRLIFHL 393

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG--NQGLA 474
               + D+ +     L   + +  MP  + +N +++ L+  G  N+G A
Sbjct: 394 CKANRVDEAVS----LFNAIRKEGMPHPYAYNSIISALIKSGKVNEGQA 438



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 112/235 (47%), Gaps = 3/235 (1%)

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           T++I++ G  +AG + +A     E     C ID+ TYTTIV       +I+ A  + + +
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G  P++ATYNA++  LCK   +E AI +  ++V  G  P+  TY  +I GL      
Sbjct: 61  TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRS 120

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             A +    M       +   Y  LIR    AG+I +   +++ M S  C+P++ T + +
Sbjct: 121 FEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTM 180

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           I  +    K+  +  A ++   M  RG  P +  ++ +++GL        A E+L
Sbjct: 181 IDGLC---KAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEML 232



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 104/244 (42%), Gaps = 34/244 (13%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M++  L P +  ++ +      A K D A+++   M +  C     ++N ++D LCK   
Sbjct: 200 MEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGD 259

Query: 189 VEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           V  A   F ++     K DV +YN++ +G+C    T+ A  V  +M     +PN+ TY  
Sbjct: 260 VAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGT 319

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ G  +  Q+ +A  ++  MK+R C  D   Y+++V G    G+++    +FD M   G
Sbjct: 320 LISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSG 379

Query: 308 V---------------------------------LPSVATYNAMIQVLCKKDSVENAILV 334
           V                                 +P    YN++I  L K   V     V
Sbjct: 380 VANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGMPHPYAYNSIISALIKSGKVNEGQAV 439

Query: 335 FEEM 338
           ++EM
Sbjct: 440 YQEM 443



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 79/175 (45%), Gaps = 3/175 (1%)

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           T++ +I  L K   +  A  + +E    G   +  TY  ++  L    +++ A+  + ++
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
             + C P + TYN L+   C  G +E  ++L  K+    C P++ TY  LI  +  +K+S
Sbjct: 61  TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRS 120

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
                A KL  EM  RG       +  ++ GLL  G    A  + +  +  G +P
Sbjct: 121 ---FEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVP 172


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 114/358 (31%), Positives = 193/358 (53%), Gaps = 10/358 (2%)

Query: 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK 197
           Q ++A +       G    A+K    +     +  +  +NTI+D +CK + V +AY LF 
Sbjct: 164 QVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFS 223

Query: 198 VFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256
               K   ADV++YN +  G+C+V +  +A+ +L EMV + +NPN+ TYNI++    + G
Sbjct: 224 EMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEG 283

Query: 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
           +++EA      M K   + DV+TY+T++ G+ +V E+K+A++VF+ M   GV P V TY 
Sbjct: 284 KVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYT 343

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
            +I   CK   V+ A+ +F+EM  K  +P   TY+ +I GLC +G +    + +  M+D 
Sbjct: 344 ILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDR 403

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
               +V TY+ LI   C  G ++R + LF KM      PN+ T+ IL+  +    K   L
Sbjct: 404 GQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLC---KGGRL 460

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC---GRLPRQF 491
             A ++  +++ +G+    +T+N ++NG      QGL +E L + S+    G +P  F
Sbjct: 461 KDAQEVFQDLLTKGYHLNVYTYNVMINGHC---KQGLLEEALTMLSKMEDNGCIPNAF 515



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 183/368 (49%), Gaps = 6/368 (1%)

Query: 101 HSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           H+P    F+  +D  A+++ Y T  +L HR++   + P   T  I+   +   G+     
Sbjct: 55  HTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGF 114

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGW 217
            +   + + G      + NT++  LC + +V+KA +   K+    F+ + +SY  + NG 
Sbjct: 115 SVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGV 174

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           C +  T  A++ L+++  R   P++  YN ++    +   + EA+  F EM  +    DV
Sbjct: 175 CKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADV 234

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           VTY T+++GF +VG++K A  + + MV   + P+V TYN ++  LCK+  V+ A  V   
Sbjct: 235 VTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAV 294

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M+     P+  TY+ ++ G     E+++A      M      P+V TY ILI  FC    
Sbjct: 295 MLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKM 354

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           ++  L LF++M     +P + TY+ LI  +    KS  +     L+ EM DRG      T
Sbjct: 355 VDEALNLFKEMHQKNMVPGIVTYSSLIDGLC---KSGRISYVWDLIDEMRDRGQPADVIT 411

Query: 458 FNRVLNGL 465
           ++ +++GL
Sbjct: 412 YSSLIDGL 419



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 152/287 (52%), Gaps = 5/287 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD--- 181
           L++ M   ++ P   T+ I+ +     GK   A  +   M +   +  + +++T++D   
Sbjct: 256 LLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYF 315

Query: 182 LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           L+ + KK +  +N   +       DV +Y ++ NG+C  K  ++AL + KEM  + + P 
Sbjct: 316 LVYEVKKAQHVFNAMSLM--GVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPG 373

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           + TY+ ++ G  ++G+I   W    EM+ R    DV+TY++++ G    G + RA  +F+
Sbjct: 374 IVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFN 433

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M +  + P++ T+  ++  LCK   +++A  VF++++ KGY  N  TYNV+I G C  G
Sbjct: 434 KMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQG 493

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            +E AL  + +M+D+ C PN  T+  +I       E ++  +L  +M
Sbjct: 494 LLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQM 540



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 114/217 (52%), Gaps = 1/217 (0%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M  + + P   T+ I+   +      D A+ +F  MH+      + ++++++D LCK  +
Sbjct: 330 MSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGR 389

Query: 189 VEKAYNLFKVFRGKFK-ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           +   ++L    R + + ADVI+Y+ + +G C     ++A+ +  +M D+ + PN+ T+ I
Sbjct: 390 ISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTI 449

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           +L G  + G++++A   F ++  +   ++V TY  +++G    G ++ A  +   M + G
Sbjct: 450 LLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNG 509

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            +P+  T+  +I  L KKD  + A  +  +M+ +G +
Sbjct: 510 CIPNAFTFETIIIALFKKDENDKAEKLLRQMIARGLL 546



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 119/259 (45%), Gaps = 3/259 (1%)

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
           ++  + A+     M+     P +  +N +L  + +      A      ++ +  + D++T
Sbjct: 37  IQNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLIT 96

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
              +++ F  +G+I    +V   ++  G  P   T N +I+ LC K  V+ A+   ++++
Sbjct: 97  LNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLL 156

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            +G+  N  +Y  +I G+C  G+   A++F+ ++     +P+V  YN +I   C    + 
Sbjct: 157 AQGFQLNQVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVS 216

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
               LF +M       ++ TYN LI    +  K   L  A  LL EMV +   P  +T+N
Sbjct: 217 EAYGLFSEMAVKGISADVVTYNTLIYGFCIVGK---LKEAIGLLNEMVLKTINPNVYTYN 273

Query: 460 RVLNGLLLIGNQGLAKEIL 478
            +++ L   G    AK +L
Sbjct: 274 ILVDALCKEGKVKEAKSVL 292


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 111/350 (31%), Positives = 180/350 (51%), Gaps = 5/350 (1%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           +F I+      AGK + A++ F  M +  C  ++ +++ ++D LCK  +V +A  L +  
Sbjct: 81  SFNILVTGLCRAGKIETALEFFRKMDDR-CSPNVITYSVLIDGLCKANRVSQAVELLESM 139

Query: 200 RGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
           + +    DVI+Y ++ +G C   +   A EVL+EM+D G  PNL TYN +L G  RA ++
Sbjct: 140 KARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRV 199

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
            +A     +M  R C  +VVTY T++ G   VG +K A  +   M++ G  P +  YN +
Sbjct: 200 SDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNML 259

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           I  LCK D V+ +I +    V  G  P+  TY+ VI GLC +  ++ A   +  +K   C
Sbjct: 260 INGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGC 319

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
            P+V  Y+ LI   C AG+++   +L+E M    C  ++ TY+ LI  +    + D+   
Sbjct: 320 PPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDE--- 376

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           A  LL  MV  G  P   T+N ++ GL  + +   A E++    R    P
Sbjct: 377 AHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAP 426



 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 178/341 (52%), Gaps = 4/341 (1%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M+     P   T+  + +      + DRA ++F  M    C  S+ ++NT+LD L +  K
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60

Query: 189 VEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
           +E+A  LF+    +   DVIS+N++  G C   +   ALE  ++M DR  +PN+ TY+++
Sbjct: 61  LERAMALFQEMLDRRSHDVISFNILVTGLCRAGKIETALEFFRKMDDR-CSPNVITYSVL 119

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           + G  +A ++ +A      MK R C  DV+TYT +V G     ++  A  V   M++ G 
Sbjct: 120 IDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGC 179

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
           +P++ TYN+++  LC+   V +A+ +  +M  +G  PN  TY  +I GLC  G ++ A  
Sbjct: 180 VPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACA 239

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
            +  M D    P++  YN+LI   C A +++  + L  +  SG   P++ TY+ +I  + 
Sbjct: 240 MLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLC 299

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
              + D+   A +LL+ +  RG  P    ++ +++GL   G
Sbjct: 300 RSNRLDE---ACRLLLYVKSRGCPPDVILYSTLIDGLCKAG 337



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 172/343 (50%), Gaps = 5/343 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  MK+    P   T+ I+ +      K   A ++   M + GC  +L ++N++L  LC
Sbjct: 135 LLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLC 194

Query: 185 KEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           + ++V  A  L +    RG    +V++Y  + +G C V R   A  +L +M+D+G  P+L
Sbjct: 195 RARRVSDALALMRDMTCRG-CTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDL 253

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
             YN+++ G  +A Q++E+            + DVVTY+++++G      +  A  +   
Sbjct: 254 MIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLY 313

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           + + G  P V  Y+ +I  LCK   V+ A  ++E M G G   +  TY+ +I GLC  G 
Sbjct: 314 VKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGR 373

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           ++ A   + RM      P+  TYN LI+  CD   ++  +EL E+M    C P+  TYNI
Sbjct: 374 VDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNI 433

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           LI  M   ++ D    A     EM+D G +P   T++ +L GL
Sbjct: 434 LIHGMCRMERVDS--AALDYFQEMIDNGVIPDHITYSILLEGL 474



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 99/332 (29%), Positives = 173/332 (52%), Gaps = 6/332 (1%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           W ++  M      P   T+  +      A +   A+ +   M   GC  ++ ++ T++D 
Sbjct: 168 WEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDG 227

Query: 183 LCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           LCK  +V+ A  +      K    D++ YN++ NG C   + ++++ +L+  V  G+ P+
Sbjct: 228 LCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPD 287

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           + TY+ V+ G  R+ +++EA R  L +K R C  DV+ Y+T++ G    G++  A ++++
Sbjct: 288 VVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYE 347

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M   G    V TY+ +I  LCK   V+ A L+   MV  G  P++ TYN +I+GLC   
Sbjct: 348 VMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLN 407

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER-GLELFEKMGSGVCLPNLDTY 420
            ++ A+E V  M+   C P+  TYNILI   C    ++   L+ F++M     +P+  TY
Sbjct: 408 HLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAALDYFQEMIDNGVIPDHITY 467

Query: 421 NILISSMFVRKKSDDLLVAGKLLI-EMVDRGF 451
           +IL+  +   KKS DL     L++ +MV  G+
Sbjct: 468 SILLEGL---KKSKDLHELRHLVLDQMVQLGY 496



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 79/185 (42%), Gaps = 38/185 (20%)

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY------------ 385
           M   G  PN  TYN +I GLC   E +RA E    MK  EC P++ TY            
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60

Query: 386 ----------------------NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
                                 NIL+   C AG+IE  LE F KM    C PN+ TY++L
Sbjct: 61  LERAMALFQEMLDRRSHDVISFNILVTGLCRAGKIETALEFFRKMDDR-CSPNVITYSVL 119

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I  +    K++ +  A +LL  M  RG  P   T+  +++GL        A E+LR    
Sbjct: 120 IDGLC---KANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLD 176

Query: 484 CGRLP 488
            G +P
Sbjct: 177 AGCVP 181


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 115/371 (30%), Positives = 196/371 (52%), Gaps = 14/371 (3%)

Query: 121 TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ--SLNSFNT 178
           +  +L+  M      P   T +++      A K   A +    M+     +  S  S+N+
Sbjct: 67  SALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASSCFSYNS 126

Query: 179 ILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
           +L+ LCK KKV +A+ +F   V       DV+SY+++ +G+C +    +A ++ K+M+D 
Sbjct: 127 LLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDL 186

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
              PN+TTYN  L G  R G+I +A   + EM    C  DV+TY+T++HGF +  +  +A
Sbjct: 187 NCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQA 246

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
             +F+ M++ G  P+  TYN ++  LCK+   + A  +F +MV +G  P+  TY  ++ G
Sbjct: 247 HELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYG 306

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
            C+ G++E+A+E    M     +P+V  YN L++ F  AG+     +LF+ M S  C P+
Sbjct: 307 FCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPD 366

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA-- 474
             ++NI+I  +   K+ DD +   + + +  D G  P   T+N ++ G  L G Q L+  
Sbjct: 367 TVSHNIMIDGLSKAKRLDDAVEVFERMEQ--DHGCSPDLVTYNSLIFG--LCGEQRLSEA 422

Query: 475 ----KEILRLQ 481
               KEI RL+
Sbjct: 423 MKVFKEIDRLK 433



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 200/380 (52%), Gaps = 6/380 (1%)

Query: 54  RTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYH-PTYAHSPSSFDHAIDL 112
            T+ +  +CP +     L++++ K   +   +A  F   ++    T A S  S++  ++ 
Sbjct: 73  ETMIKRGYCPDMATHSMLINELCK--ADKIQEAQEFLQGMNRTISTRASSCFSYNSLLNS 130

Query: 113 AARLRDYRTVWTLVHRMKS-LSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ 171
             + +     + +   M S  S+ P   +++I+ + +    +  RA K++  M +  C  
Sbjct: 131 LCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVP 190

Query: 172 SLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVL 230
           ++ ++N  L+ L ++ ++  A  +++ +       DVI+Y+ + +G+ L ++ ++A E+ 
Sbjct: 191 NVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELF 250

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
           + M+ RG  PN  TYN +L G  +  + +EA   F +M +R C+ D VTYTT+++GF  V
Sbjct: 251 EAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNV 310

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           G+I++A  VFD MV+ G  P V  YN +++   +      A  +F+ MV +   P++ ++
Sbjct: 311 GKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSH 370

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDE-CEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
           N++I GL     ++ A+E   RM+ D  C P++ TYN LI   C    +   +++F+++ 
Sbjct: 371 NIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEID 430

Query: 410 SGVCLPNLDTYNILISSMFV 429
                P+   +N+L+ +M+ 
Sbjct: 431 RLKLSPDPHAFNVLLEAMYA 450



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 136/251 (54%), Gaps = 7/251 (2%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            R+ D + V+     M S    P   T++ +   +  A K D+A ++F +M   GCR + 
Sbjct: 206 GRIADAQGVY---EEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNA 262

Query: 174 NSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLK 231
            ++N +L  LCKE K ++A+ LF+  V RG    D ++Y  +  G+C V +  +A+EV  
Sbjct: 263 VTYNCLLHGLCKESKPDEAHELFRKMVERG-CDPDKVTYTTLLYGFCNVGKIEQAVEVFD 321

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
           EMV +G +P++  YN +LKG+FRAG+  EA + F  M  R+C+ D V++  ++ G     
Sbjct: 322 EMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAK 381

Query: 292 EIKRARNVFDGM-VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
            +  A  VF+ M  + G  P + TYN++I  LC +  +  A+ VF+E+      P+   +
Sbjct: 382 RLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAF 441

Query: 351 NVVIRGLCHTG 361
           NV++  +   G
Sbjct: 442 NVLLEAMYAAG 452



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 113/219 (51%), Gaps = 13/219 (5%)

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM---VNGGVLPSVATYNAMIQVLCKKD 326
           + K  ++ V +T  + G    G+I++A      M   ++    PS  T +++IQ LCK  
Sbjct: 4   ESKAPLNNVAWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCKAG 63

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD--DECEPNVQT 384
            V++A+ + E M+ +GY P+  T++++I  LC   +++ A EF+  M         +  +
Sbjct: 64  RVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASSCFS 123

Query: 385 YNILIRYFCDAGEIERGLELFEKMGSG-VCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
           YN L+   C A ++ +   +F  M S    +P++ +Y+ILI       K D+L  A KL 
Sbjct: 124 YNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFC---KIDELGRAEKLY 180

Query: 444 IEMVDRGFMPRKFTFNRVLNGLLLIGN----QGLAKEIL 478
            +M+D   +P   T+N  LNGL+  G     QG+ +E++
Sbjct: 181 KQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMI 219


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 108/361 (29%), Positives = 191/361 (52%), Gaps = 7/361 (1%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           +++ +M  L   P + T   +   +    +   AV +   M E G +  + ++N I+D L
Sbjct: 244 SILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSL 303

Query: 184 CKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CK K+V  A++ FK + R   + +V++Y  + NG C   R + A  +L +M+ + + PN+
Sbjct: 304 CKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNV 363

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TY+ +L  + + G++ EA   F EM +   + D+VTY+++++G  +   I  A  +FD 
Sbjct: 364 ITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDL 423

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           MV+ G L  V +YN +I   CK   VE+ + +F EM  +G + N+ TYN +I+G    G+
Sbjct: 424 MVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGD 483

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           +++A EF  +M      P++ TYNIL+   CD GE+E+ L +FE M       ++ TY  
Sbjct: 484 VDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTT 543

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           +I  M    K ++   A  L   +  +G  P   T+  +++GL     +GL  E+  L +
Sbjct: 544 VIRGMCKTGKVEE---AWSLFCSLSLKGLKPDIVTYTTMMSGLC---TKGLLHEVEALYT 597

Query: 483 R 483
           +
Sbjct: 598 K 598



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 107/365 (29%), Positives = 189/365 (51%), Gaps = 4/365 (1%)

Query: 125  LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
            L+ RM +    P   T+ ++       G  D A  +   M +      +  +NTI+D LC
Sbjct: 822  LIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLC 881

Query: 185  KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            K K ++ A NLFK    K  + +V++Y+ + +  C   R + A  +L +M++R +NP++ 
Sbjct: 882  KYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVF 941

Query: 244  TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            T++ ++  + + G++ EA + + EM KR  +  +VTY+++++GF +   +  A+ +F+ M
Sbjct: 942  TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM 1001

Query: 304  VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            V+    P V TYN +I+  CK   VE  + VF EM  +G + N+ TYN++I+GL   G+ 
Sbjct: 1002 VSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDC 1061

Query: 364  ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
            + A E    M  D   PN+ TYN L+   C  G++E+ + +FE +      P + TYNI+
Sbjct: 1062 DMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIM 1121

Query: 424  ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
            I  M    K +D      L   +  +G  P    +N +++G    G++  A  + +    
Sbjct: 1122 IEGMCKAGKVED---GWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKE 1178

Query: 484  CGRLP 488
             G LP
Sbjct: 1179 DGTLP 1183



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 184/379 (48%), Gaps = 6/379 (1%)

Query: 90   FNILSYHPTYAHSPSS--FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
            FN+L+        P    ++  ID   + +       L   M++  + P   T++ +   
Sbjct: 855  FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISC 914

Query: 148  YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKAD 206
              + G+   A ++   M E      + +F+ ++D   KE K+ +A  L+ ++ +      
Sbjct: 915  LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 974

Query: 207  VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
            +++Y+ + NG+C+  R ++A ++ + MV +   P++ TYN ++KG+ +  ++EE    F 
Sbjct: 975  IVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFR 1034

Query: 267  EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
            EM +R    + VTY  ++ G    G+   A+ +F  MV+ GV P++ TYN ++  LCK  
Sbjct: 1035 EMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNG 1094

Query: 327  SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
             +E A++VFE +      P   TYN++I G+C  G++E   +    +     +P+V  YN
Sbjct: 1095 KLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYN 1154

Query: 387  ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
             +I  FC  G  E    LF++M     LPN   YN LI +   R +  D   + +L+ EM
Sbjct: 1155 TMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRA---RLRDGDREASAELIKEM 1211

Query: 447  VDRGFMPRKFTFNRVLNGL 465
               GF     T   V N L
Sbjct: 1212 RSCGFAGDASTIGLVTNML 1230



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 165/337 (48%), Gaps = 4/337 (1%)

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           Y     +++  ID   + +     +     ++   + P   T+  +     ++ +   A 
Sbjct: 289 YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAA 348

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGW 217
           ++   M +     ++ +++ +LD   K  KV +A  LF+ + R     D+++Y+ + NG 
Sbjct: 349 RLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGL 408

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           CL  R ++A ++   MV +G   ++ +YN ++ G+ +A ++E+  + F EM +R    + 
Sbjct: 409 CLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNT 468

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           VTY T++ GF   G++ +A+  F  M   G+ P + TYN ++  LC    +E A+++FE+
Sbjct: 469 VTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFED 528

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M  +    +  TY  VIRG+C TG++E A      +     +P++ TY  ++   C  G 
Sbjct: 529 MQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGL 588

Query: 398 IERGLELFEKMGSGVCLPN---LDTYNILISSMFVRK 431
           +     L+ KM     + N   L   +I +S+  ++K
Sbjct: 589 LHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIKK 625



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 115/461 (24%), Positives = 205/461 (44%), Gaps = 64/461 (13%)

Query: 64   SLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAH---------SPSSFDHAIDLAA 114
            S  + P L+  I   +   AL  L  F   S   +Y +         S    D A+ L  
Sbjct: 628  SCGYAPSLLKDIKSGVCKKALSLLRAF---SGKTSYDYREKLSRNGLSELKLDDAVALFG 684

Query: 115  RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
             +   R   +++   K LS       F ++    +S G+          M   G   +  
Sbjct: 685  EMVKSRPFPSIIEFSKLLSAIAKMNKFDVV----ISLGE---------QMQNLGIPHNHY 731

Query: 175  SFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
            +++ +++  C+  ++  A  +  K+ +  ++ ++++ + + NG+C  KR ++A+ ++ +M
Sbjct: 732  TYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQM 791

Query: 234  VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
               G  PN  T+N ++ G F   +  EA      M  + C+ D+VTY  +V+G    G+ 
Sbjct: 792  FVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDT 851

Query: 294  KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
              A N+ + M  G + P V  YN +I  LCK   +++A+ +F+EM  KG  PN  TY+ +
Sbjct: 852  DLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSL 911

Query: 354  IRGLCHTGE-----------MERALE------------FVGRMKDDECE----------- 379
            I  LC+ G            +ER +             FV   K  E E           
Sbjct: 912  ISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSI 971

Query: 380  -PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
             P++ TY+ LI  FC    ++   ++FE M S  C P++ TYN LI      K+ ++ + 
Sbjct: 972  DPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGM- 1030

Query: 439  AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
              ++  EM  RG +    T+N ++ GL   G+  +A+EI +
Sbjct: 1031 --EVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFK 1069



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 153/325 (47%), Gaps = 4/325 (1%)

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYN 211
           K + A+ +F  M +     S+  FN +L  + K KK +   +L K       + D+ ++N
Sbjct: 168 KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 227

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
           ++ N +C   + + AL +L +M+  G  P+  T   ++ G+ R  ++ +A     +M + 
Sbjct: 228 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 287

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
             + D+V Y  I+        +  A + F  +   G+ P+V TY A++  LC      +A
Sbjct: 288 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA 347

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
             +  +M+ K   PN  TY+ ++      G++  A E    M     +P++ TY+ LI  
Sbjct: 348 ARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLING 407

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
            C    I+   ++F+ M S  CL ++ +YN LI+     K+ +D +   KL  EM  RG 
Sbjct: 408 LCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGM---KLFREMSQRGL 464

Query: 452 MPRKFTFNRVLNGLLLIGNQGLAKE 476
           +    T+N ++ G    G+   A+E
Sbjct: 465 VSNTVTYNTLIQGFFQAGDVDKAQE 489



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 142/282 (50%), Gaps = 4/282 (1%)

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           ++ K+  A +LF  + + +    ++ +N + +    +K+ +  + + K+M   G+  +L 
Sbjct: 165 RDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLY 224

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           T+NIV+  +    Q+  A     +M K   E D VT  ++V+GF     +  A ++ D M
Sbjct: 225 TFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM 284

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           V  G  P +  YNA+I  LCK   V +A   F+E+  KG  PN  TY  ++ GLC++   
Sbjct: 285 VEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRW 344

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             A   +  M   +  PNV TY+ L+  F   G++    ELFE+M      P++ TY+ L
Sbjct: 345 SDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSL 404

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           I+ + +  + D+   A ++   MV +G +    ++N ++NG 
Sbjct: 405 INGLCLHDRIDE---ANQMFDLMVSKGCLADVVSYNTLINGF 443


>gi|449463822|ref|XP_004149630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 641

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 113/410 (27%), Positives = 199/410 (48%), Gaps = 6/410 (1%)

Query: 71  LVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRM- 129
           L ++++ R  +       FF   S  P Y HS   +   I    ++R +  VW L+  M 
Sbjct: 109 LPERVLSRCGDAGNLGYRFFVWASKQPGYRHSYEVYKAMIKTLGKMRQFGAVWALIEEMR 168

Query: 130 KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV 189
           K      T + F ++  R+ S     +AV++   M ++GC      F  +LD LCK   V
Sbjct: 169 KENPYMLTPEVFIVLMRRFASVRMVKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSV 228

Query: 190 EKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL 249
           ++A +LF+  R +F  ++  +  +  GWC   +  +A  VL ++ + G  P++  YN +L
Sbjct: 229 KEAASLFEDMRVRFNPNLRHFTSLLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLL 288

Query: 250 KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
            GY +AG++ +A+    EMKK  C  +  ++T ++  F    ++  A  +F  M   G  
Sbjct: 289 GGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCE 348

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
             V TY  +I   CK  + + A  + ++M+ KG+ P+  +Y  ++       E+E  +E 
Sbjct: 349 ADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQLSYLCIMMAHEKKEELEECMEL 408

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
           +  M+   C P++  YN +IR  C  G+++  + L+ +M +G   P LDTY IL+   F+
Sbjct: 409 IEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGLNPGLDTY-ILMVHGFL 467

Query: 430 RKKSDDLLVAGKLLIEMVDRGFM--PRKFTFNRVLNGLLLIGNQGLAKEI 477
            +    L+ A     EMV+RG +  P+  T   + N LL      +AK +
Sbjct: 468 SQGC--LVEACDYFKEMVERGLLSAPQYGTLKELTNALLRAEKLEMAKNM 515



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 113/256 (44%), Gaps = 5/256 (1%)

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK-CEIDVVTYTTIVHGFGVVGEIKR 295
           G   +   Y  ++K   +  Q    W    EM+K     +    +  ++  F  V  +K+
Sbjct: 136 GYRHSYEVYKAMIKTLGKMRQFGAVWALIEEMRKENPYMLTPEVFIVLMRRFASVRMVKK 195

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
           A  V D M   G  P    +  ++  LCK  SV+ A  +FE+M  + + PN   +  ++ 
Sbjct: 196 AVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRVR-FNPNLRHFTSLLY 254

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
           G C  G++  A   + ++K+   EP++  YN L+  +  AG++    +L  +M    C P
Sbjct: 255 GWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGP 314

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
           N  ++ ILI S    +K D+   A ++  EM   G      T+  +++G    GN   A 
Sbjct: 315 NAASFTILIQSFCKTEKMDE---AMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAY 371

Query: 476 EILRLQSRCGRLPRQF 491
           EIL    + G  P Q 
Sbjct: 372 EILDDMIQKGHDPSQL 387



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 126/300 (42%), Gaps = 41/300 (13%)

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
           A ++RD    + L+  MK ++ GP   +F I+ + +    K D A++IF  M   GC   
Sbjct: 294 AGKMRD---AFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEAD 350

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLK 231
           + ++ T++   CK    +KAY +   + +       +SY  I       +   + +E+++
Sbjct: 351 VVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQLSYLCIMMAHEKKEELEECMELIE 410

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
           EM   G  P+L  YN +++   + G ++EA R + EM+       + TY  +VHGF   G
Sbjct: 411 EMRKIGCVPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGLNPGLDTYILMVHGFLSQG 470

Query: 292 EIKRARNVFDGMVNGGVL--PSVATYNAMIQVLCKKDSVENAILVFEEMVGKG------- 342
            +  A + F  MV  G+L  P   T   +   L + + +E A  ++  M  KG       
Sbjct: 471 CLVEACDYFKEMVERGLLSAPQYGTLKELTNALLRAEKLEMAKNMWSCMTTKGCELNVSA 530

Query: 343 ----------------------------YMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
                                        MP   T+  ++RGL      + A+E   +++
Sbjct: 531 WTIWIHALFSNGHVKEACSYCLDMMDADLMPQPDTFAKLMRGLKKLFHRQLAVEITEKVR 590


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 117/403 (29%), Positives = 205/403 (50%), Gaps = 41/403 (10%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            ++  M    + P   T++++ + +  A + D A+++   M   GC  ++ +FN+I+D L
Sbjct: 416 AMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGL 475

Query: 184 CKEKKVEKAYNLFK---------------------VFR----GKFKA--------DVISY 210
           CK  +  +A+ +F                      +FR    G+ +A        D  ++
Sbjct: 476 CKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPDPDTYAF 535

Query: 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
           N   NG   +   ++AL+V   M++  L P+  T+NI++ G  +AG  E+A   F EM  
Sbjct: 536 NCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVA 595

Query: 271 RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
           +  + DV+T+  ++ G    G+++ AR++ D M N GV P+V TYNA++  LCK   +E 
Sbjct: 596 KNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEE 655

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           A    EEMV  G +P+S TY  ++  LC     + AL+ V  +K    +P+  TYNIL+ 
Sbjct: 656 ACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVD 715

Query: 391 YFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM---V 447
               +G+ E+ + + E+M      P++ TYN LI S+    K+ DL  A +L  +M   V
Sbjct: 716 GLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLC---KAGDLEEARRLHGDMSSRV 772

Query: 448 DRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR--LQSRCGRLP 488
            R  +P   T++ ++NGL  +G    A+E+++  ++  C  LP
Sbjct: 773 SRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLP 815



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 133/511 (26%), Positives = 236/511 (46%), Gaps = 58/511 (11%)

Query: 22  LSPLTTTSPAPL------------PPAAADPAALASLILTSTDPRTLTQTLHCPSLHWTP 69
           ++P  + SP P             P  A DP +++  + +    +++   L        P
Sbjct: 18  VAPQPSPSPNPRRGGGGSAAGNCKPLLAEDPRSISEALESLRPGQSVVAALRGCKGRLHP 77

Query: 70  QLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDH-------------AIDL---- 112
            +   I+ +L  +A     F++  +  P + H+  SF+              AIDL    
Sbjct: 78  SVAAAILAQLDGNAELGTQFYDWAAALPGFKHTIFSFNKYLNLLVKSGSPAKAIDLFRSR 137

Query: 113 -AARLRDYRTVWTLVHRMKSLSLGPTQKT----------------FAIIAERYVSAGKAD 155
              R R     ++ + R    + G  ++T                + I+ +    AG+  
Sbjct: 138 LPPRCRPNHFTYSTLLRATYKAGGDVERTLGFFRRIRSSSRSVADYNIVLQSLCRAGETA 197

Query: 156 RAVKIFLS-MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNV 212
           RA++IF   M   G   ++ ++NTI++ LCK  ++     LF+  V RG    DV++YN 
Sbjct: 198 RALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVERGHHP-DVVTYNT 256

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           + +  C      +A  +  +M  R   PN+ TY++++ G  + G+I+EA     EM ++ 
Sbjct: 257 LIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKS 316

Query: 273 CEI--DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG--VLPSVATYNAMIQVLCKKDSV 328
           C++  +++TY + + G         A  +   + +G   V P   T++ +I  LCK   +
Sbjct: 317 CDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQI 376

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           + A  VF++M+  GY+PN  TYN ++ GLC   +MERA   +  M D    P+V TY++L
Sbjct: 377 DEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVL 436

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM-V 447
           +  FC A  ++  LEL   M S  C PN+ T+N +I  +    KSD    A ++  +M +
Sbjct: 437 VDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLC---KSDRSGEAFQMFDDMAL 493

Query: 448 DRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
             G +P K T+  +++GL   G  G A+ +L
Sbjct: 494 KHGLVPDKITYCTLIDGLFRTGRAGQAEALL 524



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/385 (28%), Positives = 191/385 (49%), Gaps = 36/385 (9%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           R  SL + P   TF+ + +     G+ D A  +F  M   G   ++ ++N +++ LCK  
Sbjct: 350 RDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKAD 409

Query: 188 KVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
           K+E+A+ + +    K    DVI+Y+V+ + +C   R ++ALE+L  M  RG  PN+ T+N
Sbjct: 410 KMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFN 469

Query: 247 IVLKGYFRAGQIEEAWRFFLEMK-KRKCEIDVVTYTTI---------------------- 283
            ++ G  ++ +  EA++ F +M  K     D +TY T+                      
Sbjct: 470 SIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPD 529

Query: 284 ---------VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
                    ++G   +G++ RA  V++ M+   ++P   T+N +I   CK  + E A  +
Sbjct: 530 PDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASAL 589

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
           FEEMV K   P+  T+  +I GLC  G++E A + +  M +    PNV TYN L+   C 
Sbjct: 590 FEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCK 649

Query: 395 AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
           +G IE   +  E+M S  C+P+  TY  L+ ++    ++DD L   +L+ E+   G+ P 
Sbjct: 650 SGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDAL---QLVSELKSFGWDPD 706

Query: 455 KFTFNRVLNGLLLIGNQGLAKEILR 479
             T+N +++GL   G    A  +L 
Sbjct: 707 TVTYNILVDGLWKSGQTEQAITVLE 731



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 115/379 (30%), Positives = 187/379 (49%), Gaps = 18/379 (4%)

Query: 103  PSSFDHAIDLAARLRDYRT--VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
            P S  +   + A  R  RT     LV  +KS    P   T+ I+ +    +G+ ++A+ +
Sbjct: 670  PDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITV 729

Query: 161  FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFK----ADVISYNVIANG 216
               M   G    + ++NT++D LCK   +E+A  L      +       +V++Y+V+ NG
Sbjct: 730  LEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLING 789

Query: 217  WCLVKRTNKALEVLKEMVDRGLN--PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
             C V R ++A E+++EM+ +  +  PN+ TYN  L G  +   + EA      ++     
Sbjct: 790  LCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLR 849

Query: 275  I--DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
            +  D VT++T++ G    G+   A NVFD M+ GG +P+V TYN ++  LCK D +E A 
Sbjct: 850  VSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAH 909

Query: 333  LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
             + E MV KG  P+  TY+V++   C    ++ ALE +  M    C PNV T+N +I   
Sbjct: 910  AMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGL 969

Query: 393  CDAGEIERGLELFEKMGSGVCL-PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
            C + +     ++F+ M     L P+  TY  LI  +F    +    V   LL  M D   
Sbjct: 970  CKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEV---LLDAMPD--- 1023

Query: 452  MPRKFTFNRVLNGLLLIGN 470
             P  + FN  +NGL  +G+
Sbjct: 1024 -PDTYAFNCCINGLSKLGD 1041



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 127/453 (28%), Positives = 210/453 (46%), Gaps = 82/453 (18%)

Query: 105  SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
            +F+  I  A +  ++     L   M + +L P   TF  + +    AG+ + A  I   M
Sbjct: 569  TFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLM 628

Query: 165  HEHGCRQSLNSFNTILDLLCKEKKVEKA-----------------------YNLFKVFRG 201
               G   ++ ++N ++  LCK  ++E+A                       Y L +  R 
Sbjct: 629  GNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRT 688

Query: 202  K-------------FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
                          +  D ++YN++ +G     +T +A+ VL+EMV +G +P++ TYN +
Sbjct: 689  DDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTL 748

Query: 249  LKGYFRAGQIEEAWRFFLEMKKRK---CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV- 304
            +    +AG +EEA R   +M  R    C  +VVTY+ +++G   VG I  AR +   M+ 
Sbjct: 749  IDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMR 808

Query: 305  -NGGVLPSVATYNAMIQVLCKK----------------------DSV------------- 328
             +  VLP++ TYN+ +  LCK+                      D+V             
Sbjct: 809  KSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCG 868

Query: 329  --ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
              + A  VF++M+  GY+PN  TYNV++ GLC T +MERA   +  M D    P+V TY+
Sbjct: 869  QTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYS 928

Query: 387  ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            +L+  FC A  ++  LEL   M S  C PN+ T+N +I  +    KSD    A ++  +M
Sbjct: 929  VLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLC---KSDQSGEAFQMFDDM 985

Query: 447  -VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
             +  G  P K T+  +++GL   G  G A+ +L
Sbjct: 986  TLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLL 1018



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 113/423 (26%), Positives = 187/423 (44%), Gaps = 30/423 (7%)

Query: 64   SLHWTPQLV--DQIIKRLW-----NHALKALHFFNILSYHP---TYAHSPSSFDHAIDLA 113
            S  W P  V  + ++  LW       A+  L       +HP   TY     S   A DL 
Sbjct: 700  SFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLE 759

Query: 114  ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
               R +  + + V R       P   T++++       G+ D A ++   M    C    
Sbjct: 760  EARRLHGDMSSRVSR----CCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLP 815

Query: 174  N--SFNTILDLLCKEKKVEKAYNLFKVFRG---KFKADVISYNVIANGWCLVKRTNKALE 228
            N  ++N+ LD LCK+  + +A  L +  R    +   D ++++ + +G C   +T++A  
Sbjct: 816  NIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACN 875

Query: 229  VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
            V  +M+  G  PN+ TYN+++ G  +  ++E A      M  +    DV+TY+ +V  F 
Sbjct: 876  VFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFC 935

Query: 289  VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK-GYMPNS 347
                +  A  +  GM + G  P+V T+N++I  LCK D    A  +F++M  K G  P+ 
Sbjct: 936  KASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDK 995

Query: 348  TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
             TY  +I GL  TG   +A   +  M D    P+   +N  I      G++ R L    +
Sbjct: 996  ITYCTLIDGLFRTGWAGQAEVLLDAMPD----PDTYAFNCCINGLSKLGDVSRALH---R 1048

Query: 408  MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467
            M     +P+  T+NILI+      K+ +   A  L  EMV +   P   TF  +++GL  
Sbjct: 1049 MLELELVPDKVTFNILIAGAC---KAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCK 1105

Query: 468  IGN 470
             G 
Sbjct: 1106 AGQ 1108



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 135/274 (49%), Gaps = 9/274 (3%)

Query: 128  RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
            R  SL + P   TF+ + +     G+ D A  +F  M   G   ++ ++N +++ LCK  
Sbjct: 844  RDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTD 903

Query: 188  KVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
            K+E+A+ + +    K    DVI+Y+V+ + +C     ++ALE+L  M  RG  PN+ T+N
Sbjct: 904  KMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFN 963

Query: 247  IVLKGYFRAGQIEEAWRFFLEMK-KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
             ++ G  ++ Q  EA++ F +M  K     D +TY T++ G    G   +A  + D M +
Sbjct: 964  SIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPD 1023

Query: 306  GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
                P    +N  I  L K   V  A+     M+    +P+  T+N++I G C  G  E+
Sbjct: 1024 ----PDTYAFNCCINGLSKLGDVSRAL---HRMLELELVPDKVTFNILIAGACKAGNFEQ 1076

Query: 366  ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            A      M     +P+V T+  LI   C AG++E
Sbjct: 1077 ASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVE 1110



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 80/142 (56%), Gaps = 6/142 (4%)

Query: 350 YNVVIRGLCHTGEMERALE-FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           YN+V++ LC  GE  RALE F G M  D   P + TYN +I   C + E+  G+ELFE++
Sbjct: 183 YNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEEL 242

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
                 P++ TYN LI S+    K+ DL  A +L  +M  R  +P   T++ ++NGL  +
Sbjct: 243 VERGHHPDVVTYNTLIDSLC---KAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKV 299

Query: 469 GNQGLAKEILRLQSR--CGRLP 488
           G    A+E+++  +R  C  LP
Sbjct: 300 GRIDEARELIQEMTRKSCDVLP 321



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 62/129 (48%), Gaps = 6/129 (4%)

Query: 134  LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
            L P + T+  + +     G A +A  +  +M +        +FN  ++ L K   V +A 
Sbjct: 991  LAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPD----PDTYAFNCCINGLSKLGDVSRA- 1045

Query: 194  NLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
             L ++   +   D +++N++  G C      +A  + +EMV + L P++ T+  ++ G  
Sbjct: 1046 -LHRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLC 1104

Query: 254  RAGQIEEAW 262
            +AGQ+E  W
Sbjct: 1105 KAGQVEATW 1113


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 108/361 (29%), Positives = 191/361 (52%), Gaps = 7/361 (1%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           +++ +M  L   P + T   +   +    +   AV +   M E G +  + ++N I+D L
Sbjct: 141 SILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSL 200

Query: 184 CKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CK K+V  A++ FK + R   + +V++Y  + NG C   R + A  +L +M+ + + PN+
Sbjct: 201 CKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNV 260

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TY+ +L  + + G++ EA   F EM +   + D+VTY+++++G  +   I  A  +FD 
Sbjct: 261 ITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDL 320

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           MV+ G L  V +YN +I   CK   VE+ + +F EM  +G + N+ TYN +I+G    G+
Sbjct: 321 MVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGD 380

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           +++A EF  +M      P++ TYNIL+   CD GE+E+ L +FE M       ++ TY  
Sbjct: 381 VDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTT 440

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           +I  M    K ++   A  L   +  +G  P   T+  +++GL     +GL  E+  L +
Sbjct: 441 VIRGMCKTGKVEE---AWSLFCSLSLKGLKPDIVTYTTMMSGLC---TKGLLHEVEALYT 494

Query: 483 R 483
           +
Sbjct: 495 K 495



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 171/356 (48%), Gaps = 12/356 (3%)

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           Y     +++  ID   + +     +     ++   + P   T+  +     ++ +   A 
Sbjct: 186 YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAA 245

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGW 217
           ++   M +     ++ +++ +LD   K  KV +A  LF+ + R     D+++Y+ + NG 
Sbjct: 246 RLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGL 305

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           CL  R ++A ++   MV +G   ++ +YN ++ G+ +A ++E+  + F EM +R    + 
Sbjct: 306 CLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNT 365

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           VTY T++ GF   G++ +A+  F  M   G+ P + TYN ++  LC    +E A+++FE+
Sbjct: 366 VTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFED 425

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M  +    +  TY  VIRG+C TG++E A      +     +P++ TY  ++   C  G 
Sbjct: 426 MQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGL 485

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
           +     L+ KM     + N  T +             D+ ++ +L+ +M+  G+ P
Sbjct: 486 LHEVEALYTKMKQEGLMKNDCTLS-----------DGDITLSAELIKKMLSCGYAP 530



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 153/325 (47%), Gaps = 4/325 (1%)

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYN 211
           K + A+ +F  M +     S+  FN +L  + K KK +   +L K       + D+ ++N
Sbjct: 65  KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
           ++ N +C   + + AL +L +M+  G  P+  T   ++ G+ R  ++ +A     +M + 
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
             + D+V Y  I+        +  A + F  +   G+ P+V TY A++  LC      +A
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA 244

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
             +  +M+ K   PN  TY+ ++      G++  A E    M     +P++ TY+ LI  
Sbjct: 245 ARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLING 304

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
            C    I+   ++F+ M S  CL ++ +YN LI+     K+ +D +   KL  EM  RG 
Sbjct: 305 LCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGM---KLFREMSQRGL 361

Query: 452 MPRKFTFNRVLNGLLLIGNQGLAKE 476
           +    T+N ++ G    G+   A+E
Sbjct: 362 VSNTVTYNTLIQGFFQAGDVDKAQE 386



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 142/282 (50%), Gaps = 4/282 (1%)

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           ++ K+  A +LF  + + +    ++ +N + +    +K+ +  + + K+M   G+  +L 
Sbjct: 62  RDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLY 121

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           T+NIV+  +    Q+  A     +M K   E D VT  ++V+GF     +  A ++ D M
Sbjct: 122 TFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM 181

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           V  G  P +  YNA+I  LCK   V +A   F+E+  KG  PN  TY  ++ GLC++   
Sbjct: 182 VEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRW 241

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             A   +  M   +  PNV TY+ L+  F   G++    ELFE+M      P++ TY+ L
Sbjct: 242 SDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSL 301

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           I+ + +  + D+   A ++   MV +G +    ++N ++NG 
Sbjct: 302 INGLCLHDRIDE---ANQMFDLMVSKGCLADVVSYNTLINGF 340


>gi|449494638|ref|XP_004159605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 664

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 113/410 (27%), Positives = 199/410 (48%), Gaps = 6/410 (1%)

Query: 71  LVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRM- 129
           L ++++ R  +       FF   S  P Y HS   +   I    ++R +  VW L+  M 
Sbjct: 132 LPERVLSRCGDAGNLGYRFFVWASKQPGYRHSYEVYKAMIKTLGKMRQFGAVWALIEEMR 191

Query: 130 KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV 189
           K      T + F ++  R+ S     +AV++   M ++GC      F  +LD LCK   V
Sbjct: 192 KENPYMLTPEVFIVLMRRFASVRMVKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSV 251

Query: 190 EKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL 249
           ++A +LF+  R +F  ++  +  +  GWC   +  +A  VL ++ + G  P++  YN +L
Sbjct: 252 KEAASLFEDMRVRFNPNLRHFTSLLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLL 311

Query: 250 KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
            GY +AG++ +A+    EMKK  C  +  ++T ++  F    ++  A  +F  M   G  
Sbjct: 312 GGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCE 371

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
             V TY  +I   CK  + + A  + ++M+ KG+ P+  +Y  ++       E+E  +E 
Sbjct: 372 ADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQLSYLCIMMAHEKKEELEECMEL 431

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
           +  M+   C P++  YN +IR  C  G+++  + L+ +M +G   P LDTY IL+   F+
Sbjct: 432 IEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGLNPGLDTY-ILMVHGFL 490

Query: 430 RKKSDDLLVAGKLLIEMVDRGFM--PRKFTFNRVLNGLLLIGNQGLAKEI 477
            +    L+ A     EMV+RG +  P+  T   + N LL      +AK +
Sbjct: 491 SQGC--LVEACDYFKEMVERGLLSAPQYGTLKELTNALLRAEKLEMAKNM 538



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 113/256 (44%), Gaps = 5/256 (1%)

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK-CEIDVVTYTTIVHGFGVVGEIKR 295
           G   +   Y  ++K   +  Q    W    EM+K     +    +  ++  F  V  +K+
Sbjct: 159 GYRHSYEVYKAMIKTLGKMRQFGAVWALIEEMRKENPYMLTPEVFIVLMRRFASVRMVKK 218

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
           A  V D M   G  P    +  ++  LCK  SV+ A  +FE+M  + + PN   +  ++ 
Sbjct: 219 AVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRVR-FNPNLRHFTSLLY 277

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
           G C  G++  A   + ++K+   EP++  YN L+  +  AG++    +L  +M    C P
Sbjct: 278 GWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGP 337

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
           N  ++ ILI S    +K D+   A ++  EM   G      T+  +++G    GN   A 
Sbjct: 338 NAASFTILIQSFCKTEKMDE---AMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAY 394

Query: 476 EILRLQSRCGRLPRQF 491
           EIL    + G  P Q 
Sbjct: 395 EILDDMIQKGHDPSQL 410



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 119/283 (42%), Gaps = 41/283 (14%)

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
           A ++RD    + L+  MK ++ GP   +F I+ + +    K D A++IF  M   GC   
Sbjct: 317 AGKMRD---AFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEAD 373

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLK 231
           + ++ T++   CK    +KAY +   + +       +SY  I       +   + +E+++
Sbjct: 374 VVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQLSYLCIMMAHEKKEELEECMELIE 433

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
           EM   G  P+L  YN +++   + G ++EA R + EM+       + TY  +VHGF   G
Sbjct: 434 EMRKIGCVPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGLNPGLDTYILMVHGFLSQG 493

Query: 292 EIKRARNVFDGMVNGGVL--PSVATYNAMIQVLCKKDSVENAILVFEEMVGKG------- 342
            +  A + F  MV  G+L  P   T   +   L + + +E A  ++  M  KG       
Sbjct: 494 CLVEACDYFKEMVERGLLSAPQYGTLKELTNALLRAEKLEMAKNMWSCMTTKGCELNVSA 553

Query: 343 ----------------------------YMPNSTTYNVVIRGL 357
                                        MP   T+  ++RGL
Sbjct: 554 WTIWIHALFSNGHVKEACSYCLDMMDADLMPQPDTFAKLMRGL 596


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 116/357 (32%), Positives = 183/357 (51%), Gaps = 4/357 (1%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           ++ + +M  L L PT  TF  +     S  K   AVK+F  + + G   SL ++ TI+  
Sbjct: 126 FSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKG 185

Query: 183 LCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           LCK      A  L K    K  K DV++YN + +  C  +R N+A+    EMVD+G+ PN
Sbjct: 186 LCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPN 245

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           + TY+ +L G+   GQ+ EA   F +M  R    + VT+T +V G    G I  AR VF+
Sbjct: 246 VVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFE 305

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M   GV P   TY+A++   C +  ++ A  +F+ MVGKG+ P+   YN++I G C + 
Sbjct: 306 MMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSR 365

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
            +  A   +  M D +  P+  TY+ L++ FC AG  +   +LF++M S   LP+  TY+
Sbjct: 366 RLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYS 425

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           IL+  +      D+   A +LL  M +    P    +N ++ G+   G    A+E+ 
Sbjct: 426 ILLDGLCKHGHLDE---AFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELF 479



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 190/382 (49%), Gaps = 39/382 (10%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L   +  +   P+  T+  I +     G    A+++   M E GC+  + ++NT++D LC
Sbjct: 163 LFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLC 222

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K+++  +A   F ++       +V++Y+ I +G+C + + N+A  + K+M+ R + PN  
Sbjct: 223 KDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTV 282

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           T+ I++ G  + G I EA R F  M +   E D  TY+ ++ G+ +  ++  A+ +FD M
Sbjct: 283 TFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIM 342

Query: 304 VNGGVLPSVATYNAMIQVLCKK--------------------DSVENAIL---------- 333
           V  G  PSV  YN +I   CK                     D+V  + L          
Sbjct: 343 VGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRP 402

Query: 334 -----VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
                +F+EM   G +P+S TY++++ GLC  G ++ A   +  M++ + EP++  YNIL
Sbjct: 403 QVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNIL 462

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           I+  C+ G++E   ELF  +      P++ TY ++IS +     S++   A ++  +MV 
Sbjct: 463 IQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNE---ACEMFRKMVV 519

Query: 449 RGFMPRKFTFNRVLNGLLLIGN 470
            G +P   T+N  + G L  G+
Sbjct: 520 NGCLPNSCTYNVAIQGFLRNGD 541



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 161/322 (50%), Gaps = 6/322 (1%)

Query: 170 RQSLNSFNTILDLLCKEKK--VEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNKA 226
           R ++ +   +++ LC   +  V  A++ L K+F+   +   +++  + NG C   +   A
Sbjct: 101 RPNVYTLTILINCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDA 160

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
           +++  E+   G  P+L TY  ++KG  + G    A +   +M+++ C+ DVV Y T++  
Sbjct: 161 VKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDS 220

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
                    A   F  MV+ G+ P+V TY++++   C    +  A  +F++M+G+  MPN
Sbjct: 221 LCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPN 280

Query: 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
           + T+ +++ GLC  G +  A      M ++  EP+  TY+ L+  +C   +++   +LF+
Sbjct: 281 TVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFD 340

Query: 407 KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
            M      P++  YNILI+      KS  L  A  LL EM DR   P   T++ ++ G  
Sbjct: 341 IMVGKGFAPSVRVYNILING---HCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFC 397

Query: 467 LIGNQGLAKEILRLQSRCGRLP 488
             G   +A+++ +     G LP
Sbjct: 398 QAGRPQVAQKLFKEMCSYGLLP 419



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 119/295 (40%), Gaps = 40/295 (13%)

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI------------------- 247
           V+ +N +       K  +  + + K+M    + PN+ T  I                   
Sbjct: 69  VVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILINCLCHSNRDHVHFAFSA 128

Query: 248 ------------------VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289
                             +L G     +I +A + F E+ K      ++TYTTI+ G   
Sbjct: 129 LGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCK 188

Query: 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
           +G    A  +   M   G  P V  YN +I  LCK      A+  F EMV +G  PN  T
Sbjct: 189 IGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVT 248

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
           Y+ ++ G C+ G++  A     +M      PN  T+ IL+   C  G I     +FE M 
Sbjct: 249 YSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMT 308

Query: 410 SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
                P+  TY+ L+    ++ + D+   A KL   MV +GF P    +N ++NG
Sbjct: 309 ENGVEPDAYTYSALMDGYCLQSQMDE---AQKLFDIMVGKGFAPSVRVYNILING 360



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 113/257 (43%), Gaps = 36/257 (14%)

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           +A S   ++  I+   + R      TL+  M    L P   T++ + + +  AG+   A 
Sbjct: 347 FAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQ 406

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGW 217
           K+F  M  +G      +++ +LD LCK   +++A+ L K  +  K +  +  YN++  G 
Sbjct: 407 KLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGM 466

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           C   +   A E+   +  +G+ P++ TY +++ G  + G   EA   F +M    C  + 
Sbjct: 467 CNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNS 526

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
            TY   + GF               + NG   PS                  NA+ + EE
Sbjct: 527 CTYNVAIQGF---------------LRNGD--PS------------------NAVRLIEE 551

Query: 338 MVGKGYMPNSTTYNVVI 354
           MVG+G+  +S+T+ +++
Sbjct: 552 MVGRGFSADSSTFQMLL 568



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 84/208 (40%), Gaps = 40/208 (19%)

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG--EMERA 366
           LP V  +N ++  L KK      I + ++M      PN  T  ++I  LCH+    +  A
Sbjct: 66  LPPVVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILINCLCHSNRDHVHFA 125

Query: 367 LEFVGRMKD------------------------------DEC-----EPNVQTYNILIRY 391
              +G+M                                DE       P++ TY  +I+ 
Sbjct: 126 FSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKG 185

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
            C  G     L+L +KM    C P++  YN +I S+   +++++   A     EMVD+G 
Sbjct: 186 LCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANE---AMYFFSEMVDQGI 242

Query: 452 MPRKFTFNRVLNGLLLIGNQGLAKEILR 479
            P   T++ +L+G   +G    A  + +
Sbjct: 243 PPNVVTYSSILHGFCNLGQLNEATSLFK 270



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 5/164 (3%)

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
           SV +A+  F +++G   +P    +N ++  L         +    +M      PNV T  
Sbjct: 49  SVADAVASFNQLLGIRPLPPVVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLT 108

Query: 387 ILIRYFCDAG--EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLI 444
           ILI   C +    +        KM      P   T+  L++ +  + K  D   A KL  
Sbjct: 109 ILINCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIID---AVKLFD 165

Query: 445 EMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           E+   GF P   T+  ++ GL  IG+   A ++L+     G  P
Sbjct: 166 EIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKP 209


>gi|2827705|emb|CAA16678.1| predicted protein [Arabidopsis thaliana]
          Length = 598

 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/464 (26%), Positives = 219/464 (47%), Gaps = 45/464 (9%)

Query: 56  LTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAAR 115
           L   L+   +   P L+++++ R  +       FF   +  P Y HS   +   + + ++
Sbjct: 93  LELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQPRYCHSIEVYKSMVKILSK 152

Query: 116 LRDYRTVWTLVHRMKSLSLGPTQ-KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           +R +  VW L+  M+  +    + + F ++ +R+ SA    +A+++   M + G      
Sbjct: 153 MRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEPDEY 212

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFR---GK---------------FKADVISYNVIANG 216
            F  +LD LCK   V+ A  LF+  R   GK               F+ D++ Y  + +G
Sbjct: 213 VFGCLLDALCKHGSVKDAAKLFEDMRMRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSG 272

Query: 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID 276
           +    +   A ++L++M  RG  PN   Y ++++   +  ++EEA + F+EM++ +CE D
Sbjct: 273 YANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEAD 332

Query: 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE 336
           VVTYT +V GF   G+I +   V D M+  G++PS  TY  ++    KK+S E  + + E
Sbjct: 333 VVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELME 392

Query: 337 EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
           +M    Y P+   YNVVIR  C  GE++ A+     M+++   P V T+ I+I      G
Sbjct: 393 KMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQG 452

Query: 397 EIERGLELFEKM-----------------------GSGVCLPNLDTYNILISSMFVRKKS 433
            +    + F++M                         G C  N+ ++ I I ++F +   
Sbjct: 453 CLLEASDHFKEMLLLNTVLKDKKLEMAKDVWSCITSKGACELNVLSWTIWIHALFSKGYE 512

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
            +   A    IEM++  FMP+  TF +++ GL  + N+  A EI
Sbjct: 513 KE---ACSYCIEMIEMDFMPQPDTFAKLMKGLKKLYNREFAGEI 553



 Score = 42.0 bits (97), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 37/179 (20%), Positives = 72/179 (40%), Gaps = 22/179 (12%)

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKG-YMPNSTTYNVVIRGLCHTGEMERALEF 369
           S+  Y +M+++L K         + EEM  +   +     + V+++       +++A+E 
Sbjct: 139 SIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKKAIEV 198

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
           +  M     EP+   +  L+   C  G ++   +LFE M                     
Sbjct: 199 LDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDM--------------------- 237

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           R +   ++ A  +L++M + GF P    +  +L+G    G    A ++LR   R G  P
Sbjct: 238 RMRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEP 296


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 109/366 (29%), Positives = 186/366 (50%), Gaps = 4/366 (1%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            L+ RM        + T+  +  R   +G    A+ +F  M E   + S+  ++ ++D L
Sbjct: 195 VLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVIDSL 254

Query: 184 CKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CK+  ++ A +LF     K  KADV++Y+ I  G C   R +   ++L+EM+ R + PN+
Sbjct: 255 CKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNV 314

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            T++ ++  + + G++ EA   + EM  R    D +TY++++ GF     +  A  + D 
Sbjct: 315 VTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDL 374

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           MV+ G  P++ TY+ +I   CK   V+N + +F E+  KG + ++ TYN +++G C +G+
Sbjct: 375 MVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGK 434

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           +  A E    M      P+V TY IL+   CD GE+++ LE+FEKM     +  +  YNI
Sbjct: 435 LNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNI 494

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           +I  M    K DD   A  L   +  +G  P   T+N ++ GL   G+   A  + R   
Sbjct: 495 IIHGMCNASKVDD---AWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMK 551

Query: 483 RCGRLP 488
             G  P
Sbjct: 552 EDGCAP 557



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 106/380 (27%), Positives = 190/380 (50%), Gaps = 4/380 (1%)

Query: 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           H+  + +  I+   R R     +++V R       P   TF+ +   +   G+   AV +
Sbjct: 102 HNMYTMNIMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVAL 161

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCL 219
              M E   R ++ + NT+++ LC + +V +A  L  ++ +   +A+ I+Y  + N  C 
Sbjct: 162 VDRMVEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCK 221

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
              T  AL++ ++M +R +  ++  Y+IV+    + G +++A   F EM+ +  + DVV 
Sbjct: 222 SGNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVA 281

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y++I+ G    G       +   M+   ++P+V T++A+I V  K+  +  A  ++ EMV
Sbjct: 282 YSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMV 341

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            +G  P++ TY+ +I G C    +  A + +  M    CEPN+ TY+ILI  +C A  ++
Sbjct: 342 ARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVD 401

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
            G+ LF ++ S   + +  TYN L+       +S  L VA +L  EMV RG  P   T+ 
Sbjct: 402 NGMRLFCEISSKGLVADTVTYNTLVQGFC---QSGKLNVAKELFQEMVSRGVPPSVVTYG 458

Query: 460 RVLNGLLLIGNQGLAKEILR 479
            +L+GL   G    A EI  
Sbjct: 459 ILLDGLCDNGELQKALEIFE 478



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 108/384 (28%), Positives = 185/384 (48%), Gaps = 8/384 (2%)

Query: 81  NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKT 140
           N AL AL  F  +      A S   +   ID   +  +     +L + M+   +      
Sbjct: 224 NTAL-ALDLFRKMEERSIKA-SVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVA 281

Query: 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--V 198
           ++ I     + G+ D   K+   M       ++ +F+ ++D+  KE K+ +A  L+   V
Sbjct: 282 YSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMV 341

Query: 199 FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
            RG    D I+Y+ + +G+C   R  +A ++L  MV +G  PN+ TY+I++  Y +A ++
Sbjct: 342 ARG-IAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRV 400

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           +   R F E+  +    D VTY T+V GF   G++  A+ +F  MV+ GV PSV TY  +
Sbjct: 401 DNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGIL 460

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           +  LC    ++ A+ +FE+M     +     YN++I G+C+  +++ A      +     
Sbjct: 461 LDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGV 520

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
           +P+V TYN++I   C  G +     LF KM    C P+  TYNILI +         ++ 
Sbjct: 521 KPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTYNILIRAHL---GGSGVIS 577

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVL 462
           + +L+ EM  RGF     T   V+
Sbjct: 578 SVELIEEMKMRGFAADASTIKMVV 601



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 171/375 (45%), Gaps = 4/375 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           F       AR ++Y  V      M    +     T  I+   +    K   A  +     
Sbjct: 72  FSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYTMNIMINCFCRKRKLLFAFSVVGRAL 131

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTN 224
           + G   +  +F+T+++  C E +V +A  L  ++   K++ +V++ N + NG CL  R  
Sbjct: 132 KFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLKGRVT 191

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           +AL ++  MV  G   N  TY  VL    ++G    A   F +M++R  +  VV Y+ ++
Sbjct: 192 EALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVI 251

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
                 G +  A ++F+ M   G+   V  Y+++I  LC     ++   +  EM+G+  +
Sbjct: 252 DSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNII 311

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           PN  T++ +I      G++  A E    M      P+  TY+ LI  FC    +    ++
Sbjct: 312 PNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQM 371

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
            + M S  C PN+ TY+ILI+S    K+ D+ +   +L  E+  +G +    T+N ++ G
Sbjct: 372 LDLMVSKGCEPNIVTYSILINSYCKAKRVDNGM---RLFCEISSKGLVADTVTYNTLVQG 428

Query: 465 LLLIGNQGLAKEILR 479
               G   +AKE+ +
Sbjct: 429 FCQSGKLNVAKELFQ 443



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 131/301 (43%), Gaps = 16/301 (5%)

Query: 191 KAYNLFKVF-RGKFKADVISYNVIA-----------NGWCLVKRTNKALEVLKEMVDRGL 238
           KA N  ++  +G  +  ++ Y+ I+           NG   +K  N+A+++ + M+    
Sbjct: 7   KASNFTQIIDKGTLRISLLHYSCISEAKVSYKERLRNGIVDIK-VNEAIDLFESMIQSRP 65

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
            P+L  ++ +     R  + +    F  EM     E ++ T   +++ F    ++  A +
Sbjct: 66  LPSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYTMNIMINCFCRKRKLLFAFS 125

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
           V    +  G  P+  T++ +I   C +  V  A+ + + MV   Y PN  T N +I GLC
Sbjct: 126 VVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGLC 185

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLD 418
             G +  AL  + RM    CE N  TY  ++   C +G     L+LF KM       ++ 
Sbjct: 186 LKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASVV 245

Query: 419 TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
            Y+I+I S+      DD L    L  EM  +G       ++ ++ GL   G      ++L
Sbjct: 246 QYSIVIDSLCKDGNLDDAL---SLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKML 302

Query: 479 R 479
           R
Sbjct: 303 R 303


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 109/345 (31%), Positives = 187/345 (54%), Gaps = 7/345 (2%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           ++ I+       G+   A+++   +     R ++  ++ I+D LCK+  V++AY+L+   
Sbjct: 165 SYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEM 224

Query: 200 RGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
            GK    DV++Y+++ +G+C+V + N+A+++L EMV   +NP++ TY I++    + G++
Sbjct: 225 VGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKV 284

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           +EA      M K    +DVV Y+T++ G+ +V E+  A+ VF  M   GV P V  Y+ M
Sbjct: 285 KEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIM 344

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           I  LCK   V+ A+ +FEE+  K  +P++ TY  +I  LC +G +    +    M D   
Sbjct: 345 INGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQ 404

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
            P+V TYN LI   C  G ++R + LF KM      PN+ T+ IL+  +    K   L  
Sbjct: 405 PPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLC---KVGRLKN 461

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           A +   +++ +G+     T+  ++NGL     +GL  E L LQSR
Sbjct: 462 ALEFFQDLLTKGYCLNVRTYTVMINGLC---KEGLLDEALALQSR 503



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 97/331 (29%), Positives = 171/331 (51%), Gaps = 4/331 (1%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           + L   M    + P   T++I+   +   G+ +RA+ +   M        + ++  ++D 
Sbjct: 218 YDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDA 277

Query: 183 LCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           LCKE KV++A N+  V  +     DV+ Y+ + +G+CLV   N A  V   M   G+ P+
Sbjct: 278 LCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPD 337

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           +  Y+I++ G  +  +++EA   F E+ ++    D VTYT+++      G I    ++FD
Sbjct: 338 VHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFD 397

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M++ G  P V TYN +I  LCK   ++ AI +F +M  +   PN  T+ +++ GLC  G
Sbjct: 398 EMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVG 457

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
            ++ ALEF   +       NV+TY ++I   C  G ++  L L  +M    C+ +  T+ 
Sbjct: 458 RLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQSRMEDNGCISDAVTFE 517

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
           I+I + F + ++D    A KL+ EM+ RG +
Sbjct: 518 IMIRAFFDKDENDK---AEKLVREMIARGLL 545



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 124/266 (46%), Gaps = 5/266 (1%)

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
           L    + A+     M      P+   +N +L       +   A   + +M+  + E D  
Sbjct: 35  LTHNADDAVSQFNHMFHVHPTPHTFHFNKILISLVNVKRYPTAISLYKQMELSEVEPDYF 94

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           T   I++ F   G++  A +    ++  G  P+  T N +++ LC +  V+ A+   +++
Sbjct: 95  TLNIIINCFCHFGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKV 154

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
           + +G+  +  +Y ++I G+C  GE   A+  + R++     PNV  Y+++I   C    +
Sbjct: 155 LAQGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLV 214

Query: 399 ERGLELFEKM-GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           +   +L+ +M G G+  P++ TY+IL+S   +  +   L  A  LL EMV     P  +T
Sbjct: 215 DEAYDLYTEMVGKGIS-PDVVTYSILVSGFCIVGQ---LNRAIDLLNEMVLENINPDIYT 270

Query: 458 FNRVLNGLLLIGNQGLAKEILRLQSR 483
           +  +++ L   G    A+ +L +  +
Sbjct: 271 YTILVDALCKEGKVKEAENVLAVMVK 296



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 95/218 (43%), Gaps = 4/218 (1%)

Query: 55  TLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAA 114
           T+TQ    P +H    +++ + K       +AL+ F  + +         ++   ID   
Sbjct: 328 TMTQMGVTPDVHCYSIMINGLCK--IKRVDEALNLFEEI-HQKNMVPDTVTYTSLIDCLC 384

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           +      VW L   M      P   T+  + +     G  DRA+ +F  M +   R ++ 
Sbjct: 385 KSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVY 444

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           +F  +LD LCK  +++ A   F+    K +  +V +Y V+ NG C     ++AL +   M
Sbjct: 445 TFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQSRM 504

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
            D G   +  T+ I+++ +F   + ++A +   EM  R
Sbjct: 505 EDNGCISDAVTFEIMIRAFFDKDENDKAEKLVREMIAR 542


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 113/390 (28%), Positives = 202/390 (51%), Gaps = 11/390 (2%)

Query: 83  ALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           A  ALHFF+++    T   S SSF+H +   A+++ Y  V++L ++M+   L   + T  
Sbjct: 50  ATHALHFFHLM-MRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLN 108

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRG 201
           I+     +  +       F  +   G   ++ ++NT++  LC E ++ +A  LF ++ + 
Sbjct: 109 ILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKL 168

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR------GLNPNLTTYNIVLKGYFRA 255
               DV++Y  +  G C     N AL++ +EM++          PN+ TYNI++ G  + 
Sbjct: 169 GCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKV 228

Query: 256 GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
           G+ +EA + F EMK +     +++Y +++HGF   G+ + ++ + D M++ G+ P + T+
Sbjct: 229 GREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTF 288

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           N +I  LCK+  V  A  +   M+  G +P+  TYN +I G C  G++  A E    M  
Sbjct: 289 NVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPS 348

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
             CEP+V +YN+LI  +    ++E  ++L+ +M      PN+ TY+ L+  +F+  K DD
Sbjct: 349 KGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDD 408

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
              A KL   M   G     +T+   L+GL
Sbjct: 409 ---AKKLFSVMKAHGIAENSYTYGIFLDGL 435



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 180/366 (49%), Gaps = 39/366 (10%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+ II +     G+ D A ++F  M   G   S+ S+N+++   C   K E++  L
Sbjct: 213 PNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRL 272

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             ++     + D++++NV+ +  C   +  +A ++L  M++ G+ P+L TYN +++G+  
Sbjct: 273 LDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCM 332

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G +  A   F+ M  + CE DV++Y  +++G+    +++ A  +++ M+  G  P+V T
Sbjct: 333 VGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVIT 392

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY------------------------ 350
           Y+++++ +     V++A  +F  M   G   NS TY                        
Sbjct: 393 YDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELK 452

Query: 351 -----------NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
                      N +I GLC  G++E A E   ++ ++  EPNV TY I+I  FC  G+++
Sbjct: 453 SSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVD 512

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
           +   L +KM +  C P++ TYN L+   +   K ++++   +LL  M  +   P   T +
Sbjct: 513 KANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVV---QLLHRMAQKDVSPDAITCS 569

Query: 460 RVLNGL 465
            V++ L
Sbjct: 570 IVVDML 575



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 158/314 (50%), Gaps = 1/314 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M    L P   TF ++ +     GK   A K+   M E G    L ++N++++  C
Sbjct: 272 LLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFC 331

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
               +  A  LF     K  + DVISYNV+ NG+    +  +A+++  EM+  G  PN+ 
Sbjct: 332 MVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVI 391

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY+ +LKG F AG++++A + F  MK      +  TY   + G      +  A  +F  +
Sbjct: 392 TYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTEL 451

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            +      +   N +I  LCK   +E A  +FE++  +G+ PN  TY ++I G C  G++
Sbjct: 452 KSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQV 511

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           ++A   + +M+ + C P++ TYN L+R F ++ ++E  ++L  +M      P+  T +I+
Sbjct: 512 DKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIV 571

Query: 424 ISSMFVRKKSDDLL 437
           +  +   +K  + L
Sbjct: 572 VDMLSKDEKYQECL 585



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 121/274 (44%), Gaps = 38/274 (13%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+  + E +   G  + A ++F+SM   GC   + S+N +++   K  KVE+A  L
Sbjct: 318 PDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKL 377

Query: 196 FK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY-------- 245
           +   +  GK + +VI+Y+ +  G  L  + + A ++   M   G+  N  TY        
Sbjct: 378 YNEMLLVGK-RPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLC 436

Query: 246 ---------------------------NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
                                      N ++ G  +AG++E AW  F ++     E +VV
Sbjct: 437 KNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVV 496

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TYT ++HGF   G++ +A  +   M   G  P + TYN +++   + + +E  + +   M
Sbjct: 497 TYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRM 556

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
             K   P++ T ++V+  L    + +  L  + R
Sbjct: 557 AQKDVSPDAITCSIVVDMLSKDEKYQECLHLLPR 590



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 105/224 (46%), Gaps = 9/224 (4%)

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
           A  FF  M +      + ++  ++ G   +    +  ++++ M   G+     T N ++ 
Sbjct: 53  ALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLN 112

Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
            LC  + +      F  ++ +GY PN  TYN +I+GLC    +  A     RM+   C P
Sbjct: 113 CLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTP 172

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGV------CLPNLDTYNILISSMFVRKKSD 434
           +V TY  LI+  C  G I   L+L ++M + +      C PN+ TYNI++  +    + D
Sbjct: 173 DVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGRED 232

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           +   A +L  EM  +G +P   ++N +++G    G    +K +L
Sbjct: 233 E---AKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLL 273


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 117/408 (28%), Positives = 199/408 (48%), Gaps = 9/408 (2%)

Query: 75  IIKRLWNHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSL 132
           I+   ++H  +    F++L+        P+  +F   I+   ++  +     L   M + 
Sbjct: 138 ILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVAR 197

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
              P   T+  I       G+   A  +   M E GC+ ++ +++TI+D   K+++V +A
Sbjct: 198 GCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEA 257

Query: 193 YNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
            ++F   + K    D+ +YN +  G C   +  +A  +L EM    + P++ T+N+++  
Sbjct: 258 LDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDT 317

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
             + G++ EA      M +   E DVVTY+++++G+ +  E+  AR +FD M+  G  P 
Sbjct: 318 ICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPD 377

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
           V +YN +I   CK   ++ A  +F EM+ +G  PN+ +YN +I GLC  G +  A     
Sbjct: 378 VFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFK 437

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
            M  +   PN+ TY+IL+  FC  G   +   LF  M S    PNL  YNILI +M    
Sbjct: 438 NMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMC--- 494

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           KS +L  A KL  E+  +G  P    +  ++NGL     +GL  E L 
Sbjct: 495 KSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLC---KEGLLDEALE 539



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 163/322 (50%), Gaps = 3/322 (0%)

Query: 90  FNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
            +I SY      SP   +++  I        ++    L++ M+SL++ P   TF ++ + 
Sbjct: 258 LDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDT 317

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKAD 206
               GK   A  +  +M E G    + ++++++       +V +A  LF     K  K D
Sbjct: 318 ICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPD 377

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           V SYN++ NG+C VKR ++A ++  EM+ +GL PN  +YN ++ G  + G + EA   F 
Sbjct: 378 VFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFK 437

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
            M       ++ TY+ ++ GF   G   +A  +F  M +    P++  YN +I  +CK  
Sbjct: 438 NMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSG 497

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
           ++ +A  +F E+  KG  PN+  Y  +I GLC  G ++ ALE    M++D C P+  +YN
Sbjct: 498 NLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYN 557

Query: 387 ILIRYFCDAGEIERGLELFEKM 408
           ++IR F    +  R ++L  +M
Sbjct: 558 VIIRGFLHHKDESRAVQLIGEM 579



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/363 (28%), Positives = 175/363 (48%), Gaps = 6/363 (1%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           Y TV +L  +M+   L P   T +I+   +    + D A  +   + + G + ++ +F T
Sbjct: 114 YDTVISLTKQMELAGLSPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTT 173

Query: 179 ILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
           +++ LCK  K  +A  LF   V RG  + DV +Y  I NG C +  T  A  +LK+M + 
Sbjct: 174 LINWLCKVGKFAQAMELFDDMVARG-CRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEA 232

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           G  PN+ TY+ ++  + +  ++ EA   F  MK +    D+ TY +++ G     + K A
Sbjct: 233 GCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEA 292

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
             + + M +  ++P + T+N ++  +CK+  V  A  V + M   G  P+  TY+ ++ G
Sbjct: 293 SALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYG 352

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
                E+  A +    M    C+P+V +YNILI  +C    I+   +LF +M      PN
Sbjct: 353 YSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPN 412

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKE 476
             +YN LI  +    +   L  A  L   M   G +P  FT++ +L+G    G  G A  
Sbjct: 413 NVSYNTLIHGLC---QLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFR 469

Query: 477 ILR 479
           + R
Sbjct: 470 LFR 472



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 173/338 (51%), Gaps = 4/338 (1%)

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVI 213
           D  + +   M   G   ++ + + +++     ++V+ A++ L K+ +   +  ++++  +
Sbjct: 115 DTVISLTKQMELAGLSPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTL 174

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
            N  C V +  +A+E+  +MV RG  P++ TY  ++ G  + G+   A     +M++  C
Sbjct: 175 INWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGC 234

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
           + +VVTY+TI+        +  A ++F  M   G+ P + TYN++IQ LC     + A  
Sbjct: 235 QPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASA 294

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           +  EM     MP+  T+NV++  +C  G++  A   +  M +   EP+V TY+ L+  + 
Sbjct: 295 LLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYS 354

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
              E+    +LF+ M +  C P++ +YNILI+     K+ D+   A +L  EM+ +G  P
Sbjct: 355 LRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDE---AKQLFNEMIHQGLTP 411

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
              ++N +++GL  +G+   A+ + +     G LP  F
Sbjct: 412 NNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLF 449



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 99/215 (46%), Gaps = 1/215 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   ++ I+   Y    + D A ++F  M   G   +  S+NT++  LC+   + +A NL
Sbjct: 376 PDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNL 435

Query: 196 FKVFRGKFK-ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           FK         ++ +Y+++ +G+C      KA  + + M      PNL  YNI++    +
Sbjct: 436 FKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCK 495

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
           +G + +A + F E+  +  + +   YTTI++G    G +  A   F  M   G  P   +
Sbjct: 496 SGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEIS 555

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
           YN +I+          A+ +  EM  KG++ +  T
Sbjct: 556 YNVIIRGFLHHKDESRAVQLIGEMRDKGFIADVGT 590


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 114/388 (29%), Positives = 193/388 (49%), Gaps = 4/388 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  I+   ++  +     L   M +    P   T+  I       G+   A  +F  M
Sbjct: 194 TFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKM 253

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
            E GC+  + +++TI+D LCK+++V +A ++F   + K    ++ +YN +  G C   R 
Sbjct: 254 GEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRW 313

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A  +L EM+   + PN+ T+++++  + + G + EA      M +   E +VVTY+++
Sbjct: 314 REASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSL 373

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++G+ +  E+  AR +FD M+  G  P V +YN +I   CK   +  A  +F EM+ +G 
Sbjct: 374 MNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGL 433

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+  +YN +I GLC  G +  A +    M  +   P++ TY+IL+  FC  G + +   
Sbjct: 434 TPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFR 493

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           LF  M S    PN+  YNILI +M    KS +L  A KL  E+  +G  P    +  ++N
Sbjct: 494 LFRAMQSTYLKPNMVMYNILIDAMC---KSRNLKEARKLFSELFVQGLQPNVQIYTTIIN 550

Query: 464 GLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           GL   G    A E  R     G  P +F
Sbjct: 551 GLCKEGLLDEALEAFRNMEEDGCPPNEF 578



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 179/350 (51%), Gaps = 10/350 (2%)

Query: 63  PSLHWTPQLVDQIIK-RLWNHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDY 119
           P +     ++D + K R  N AL      +I SY      SP+  +++  I        +
Sbjct: 260 PDVVTYSTIIDSLCKDRRVNEAL------DIFSYMKAKGISPNIFTYNSLIQGLCNFSRW 313

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
           R    +++ M SL++ P   TF+++   +   G    A  +  +M E G   ++ +++++
Sbjct: 314 REASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSL 373

Query: 180 LDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           ++    + +V +A  LF V   K  K DV SYN++ NG+C  KR  +A ++  EM+ +GL
Sbjct: 374 MNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGL 433

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
            P++ +YN ++ G  + G++ EA   F  M       D+ TY+ ++ GF   G + +A  
Sbjct: 434 TPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFR 493

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
           +F  M +  + P++  YN +I  +CK  +++ A  +F E+  +G  PN   Y  +I GLC
Sbjct: 494 LFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLC 553

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
             G ++ ALE    M++D C PN  +YN++IR F    +  R ++L  +M
Sbjct: 554 KEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEM 603



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 172/349 (49%), Gaps = 4/349 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   ID   + R       +   MK+  + P   T+  + +   +  +   A  +   M
Sbjct: 264 TYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEM 323

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRT 223
                  ++ +F+ ++++ CKE  V +A  + K       + +V++Y+ + NG+ L    
Sbjct: 324 MSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEV 383

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A ++   M+ +G  P++ +YNI++ GY +A +I EA + F EM  +    D+V+Y T+
Sbjct: 384 VEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTL 443

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G   +G ++ A ++F  M+  G LP + TY+ ++   CK+  +  A  +F  M     
Sbjct: 444 IDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYL 503

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN   YN++I  +C +  ++ A +    +     +PNVQ Y  +I   C  G ++  LE
Sbjct: 504 KPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALE 563

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
            F  M    C PN  +YN++I   F++ K +   V  +L+ EM ++GF+
Sbjct: 564 AFRNMEEDGCPPNEFSYNVIIRG-FLQHKDESRAV--QLIGEMREKGFV 609



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 169/335 (50%), Gaps = 4/335 (1%)

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVI 213
           D  + +   M   G      + + +++   + ++V+  ++ L K+ +   +  ++++N +
Sbjct: 139 DAVISLSKQMELAGLSPDTYTLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTL 198

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
            NG C V +  +A+E+  +MV RG  P++ TY  ++ G  + G+   A   F +M +  C
Sbjct: 199 INGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGC 258

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
           + DVVTY+TI+        +  A ++F  M   G+ P++ TYN++IQ LC       A  
Sbjct: 259 QPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASA 318

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           +  EM+    MPN  T++++I   C  G +  A   +  M +   EPNV TY+ L+  + 
Sbjct: 319 MLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYS 378

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
              E+    +LF+ M +  C P++ +YNILI+     K+  +   A +L  EM+ +G  P
Sbjct: 379 LQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGE---AKQLFNEMIHQGLTP 435

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
              ++N +++GL  +G    A ++ +     G LP
Sbjct: 436 DIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLP 470



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 133/257 (51%), Gaps = 1/257 (0%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M  + + P   T++ +   Y    +   A K+F  M   GC+  + S+N +++  CK K+
Sbjct: 358 MTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKR 417

Query: 189 VEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           + +A  LF ++       D++SYN + +G C + R  +A ++ K M+  G  P+L TY+I
Sbjct: 418 IGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSI 477

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           +L G+ + G + +A+R F  M+    + ++V Y  ++        +K AR +F  +   G
Sbjct: 478 LLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQG 537

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           + P+V  Y  +I  LCK+  ++ A+  F  M   G  PN  +YNV+IRG     +  RA+
Sbjct: 538 LQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAV 597

Query: 368 EFVGRMKDDECEPNVQT 384
           + +G M++     +V T
Sbjct: 598 QLIGEMREKGFVADVAT 614


>gi|449469288|ref|XP_004152353.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Cucumis sativus]
          Length = 529

 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 129/450 (28%), Positives = 213/450 (47%), Gaps = 10/450 (2%)

Query: 28  TSPAPLPPAAADP------AALASLILTSTDPR-TLTQTLHCPSLHWTPQLVDQIIKRLW 80
           TS A    A +DP      + ++ ++    +P   L   L   S + +  LV+Q++KR  
Sbjct: 33  TSFATEARAGSDPTLPFLVSEISRILSDRRNPHHDLEVGLSSFSSNVSTDLVEQVLKRCK 92

Query: 81  NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWT-LVHRMKSLSLGPTQK 139
           N A  A  FF      P +  S  S+   +D+      +  +W  L+   ++ S   T +
Sbjct: 93  NIAFSAHRFFLWAKRIPGFEPSDDSYHIVVDILGSSGQFAILWDFLIEIRETRSSVITHE 152

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
            F  +   Y  A     A++ F  M E G R  ++  + +L  LCK K V  A   F   
Sbjct: 153 LFWHVFTAYSRADLPQDAIRAFNRMGEFGIRAGVDDLDKLLYTLCKRKHVAHAQQFFDKV 212

Query: 200 RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
           +  F   V +Y+++  GW +V  +N A +V  EM +RG   ++  YN +L+   + G+ +
Sbjct: 213 KSVFNPSVKTYSILTRGWGVVGDSNNAQKVFDEMRERGCLIDVLAYNSLLEALCKGGKRD 272

Query: 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319
           EA++ FLEM     + D  TY+  +       ++     V +      +LP+V TYN +I
Sbjct: 273 EAYKMFLEMDSNGVDPDADTYSIFIRSSCQENDLHTVYRVLERTKRKNLLPNVFTYNCVI 332

Query: 320 QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
           + LCK  +VE A  + +EM+ +G  P++ +YN +    C   E+  AL  V RM  D+C 
Sbjct: 333 KKLCKDQNVEEAYQILDEMIERGVTPDTWSYNAIQAYHCDHSEVNSALNLVKRMDRDKCV 392

Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA 439
           P+  TYN++++     G  +R  E++E MG     P++ TY ++I   F +KK   L  A
Sbjct: 393 PDKHTYNMVLKLLVRVGRFDRANEVWESMGKRGFYPSVSTYAVMIHG-FCKKKW-KLEEA 450

Query: 440 GKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
            K    M+D G  P   T   + + LL IG
Sbjct: 451 CKYFEMMIDEGIPPYIATVELLRDRLLGIG 480



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 113/245 (46%), Gaps = 9/245 (3%)

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI--- 293
           G  P+  +Y+IV+     +GQ    W F +E+++ +    V+T+    H F         
Sbjct: 110 GFEPSDDSYHIVVDILGSSGQFAILWDFLIEIRETRSS--VITHELFWHVFTAYSRADLP 167

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           + A   F+ M   G+   V   + ++  LCK+  V +A   F++ V   + P+  TY+++
Sbjct: 168 QDAIRAFNRMGEFGIRAGVDDLDKLLYTLCKRKHVAHAQQFFDK-VKSVFNPSVKTYSIL 226

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
            RG    G+   A +    M++  C  +V  YN L+   C  G+ +   ++F +M S   
Sbjct: 227 TRGWGVVGDSNNAQKVFDEMRERGCLIDVLAYNSLLEALCKGGKRDEAYKMFLEMDSNGV 286

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGL 473
            P+ DTY+I I S     + +DL    ++L     +  +P  FT+N V+  L    N   
Sbjct: 287 DPDADTYSIFIRSSC---QENDLHTVYRVLERTKRKNLLPNVFTYNCVIKKLCKDQNVEE 343

Query: 474 AKEIL 478
           A +IL
Sbjct: 344 AYQIL 348


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 113/329 (34%), Positives = 174/329 (52%), Gaps = 4/329 (1%)

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKR 222
           M + G + +L +FNT+L  LC + K+  A  LF ++ +   + DVI+Y+ I NG C +  
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGN 60

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
           T  AL++LK+M ++G  PN+  YN ++    +   + EA  FF EM K     DV TY++
Sbjct: 61  TTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSS 120

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           I+HGF  +G +  A ++F  MV   V+P+  T+  +I  LCKK  +  A LVFE M  KG
Sbjct: 121 ILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKG 180

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
             P+  TYN ++ G C   +M+ A +    M    C PNV++YNILI   C +G I+   
Sbjct: 181 LEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAK 240

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
            L  +M      P++ TY+ L+       +  +   A +LL EM   G +P   T++ VL
Sbjct: 241 GLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQE---AQELLKEMCSYGLLPNLITYSIVL 297

Query: 463 NGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           +GL   G+   A E+L+        P  F
Sbjct: 298 DGLCKHGHLDEAFELLKAMQESKIEPNIF 326



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/365 (30%), Positives = 182/365 (49%), Gaps = 4/365 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L   M  +   P   T++ I       G    A+++   M E GC+ ++ ++NTI+D LC
Sbjct: 32  LFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLC 91

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K++ V +A + F ++ +     DV +Y+ I +G+C + R N+A  + K+MV+R + PN  
Sbjct: 92  KDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKV 151

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           T+ I++ G  +   I EAW  F  M ++  E DV TY  +V G+    ++  A+ +F+ M
Sbjct: 152 TFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIM 211

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G  P+V +YN +I   CK   ++ A  +  EM  K   P+  TY+ ++RG C  G  
Sbjct: 212 DRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRP 271

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A E +  M      PN+ TY+I++   C  G ++   EL + M      PN+  Y IL
Sbjct: 272 QEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTIL 331

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I  M    K   L  A +L   +  +G  P   T+  +++GLL  G    A E+ R  + 
Sbjct: 332 IEGMCTFGK---LEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAV 388

Query: 484 CGRLP 488
            G LP
Sbjct: 389 NGCLP 393



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/351 (30%), Positives = 174/351 (49%), Gaps = 4/351 (1%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M  L L PT  TF  +     S  K   AVK+F  M + G    + +++TI++ LCK   
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGN 60

Query: 189 VEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
              A  L K    K  K +V++YN I +  C  +   +A++   EMV  G+ P++ TY+ 
Sbjct: 61  TTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSS 120

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           +L G+   G++ EA   F +M +R    + VT+T ++ G      I  A  VF+ M   G
Sbjct: 121 ILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKG 180

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           + P V TYNA++   C +  ++ A  +F  M  KG  PN  +YN++I G C +G ++ A 
Sbjct: 181 LEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAK 240

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
             +  M      P++ TY+ L+R FC  G  +   EL ++M S   LPNL TY+I++  +
Sbjct: 241 GLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGL 300

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
                 D+   A +LL  M +    P  F +  ++ G+   G    A+E+ 
Sbjct: 301 CKHGHLDE---AFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELF 348


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 110/383 (28%), Positives = 194/383 (50%), Gaps = 18/383 (4%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           ++  ID   + +     + L     S  + P   T+  +   +   GK   A+ +F  M 
Sbjct: 336 YNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMT 395

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTN 224
                  + +F+ ++D  CK+  +++A N+  +  +   K DV++Y+ + +G+CLV   N
Sbjct: 396 SKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVN 455

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           KA  +   M  RG+  N+ +YNI++ G+ +   ++EA + F EM  ++   DV+TY++++
Sbjct: 456 KAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLI 515

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            G    G I  A  + D M   G  P + TYN+++  LCKK  V+ AI +  ++ G+G  
Sbjct: 516 DGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIR 575

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           P+  TY ++++GLC +G++E A +    +       +V  Y ++I+ FCD G  +  L L
Sbjct: 576 PDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALAL 635

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
             KM    C+P+  TY I+I S+F + ++D   +A KLL EM+ R              G
Sbjct: 636 LSKMEENGCIPDAKTYEIIILSLFEKDEND---MAEKLLREMIMR--------------G 678

Query: 465 LLLIGNQGLAKEILRLQSRCGRL 487
           LL+     L   IL  ++ C RL
Sbjct: 679 LLVALTDDLVASILVRRTWCARL 701



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/414 (27%), Positives = 194/414 (46%), Gaps = 24/414 (5%)

Query: 71  LVDQIIKRLWNHALKALHFFNIL-SYHPTYAHSP---SSFDHAIDLAARLRDYRTVWTLV 126
           L D +  RL+N     LH F IL  YH T+        SF+ +I+           +T  
Sbjct: 208 LKDFLQSRLFN----VLHSFKILIEYHKTFIKQKCLLKSFEISIE-----------YTPP 252

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186
             +K+    P   T     + +   G+  +A+     +   G      S+ T+++ LCK 
Sbjct: 253 KILKN-GYEPDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKV 311

Query: 187 KKVEKAYNLFKVFRGKF-KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
            + + A  L +   GK  + DV+ YN I +G C  K  N A ++  E V + + P++ TY
Sbjct: 312 GETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTY 371

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           N ++ G+   G++++A   F +M  +    DV T++ +V GF   G IK A+NV   M+ 
Sbjct: 372 NALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMK 431

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
             + P V TY++++   C  + V  A  +F  M  +G   N  +YN++I G C    ++ 
Sbjct: 432 QSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDE 491

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           A++    M   +  P+V TY+ LI   C +G I   LEL ++M      P++ TYN ++ 
Sbjct: 492 AMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILD 551

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           ++  +   D    A  LL ++  +G  P   T+  ++ GL   G    A+++  
Sbjct: 552 ALCKKHHVDK---AITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFE 602



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 67/167 (40%), Gaps = 34/167 (20%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  +D   +        TL+ ++K   + P   T+ I+ +    +GK + A K+F   
Sbjct: 545 TYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVF--- 601

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTN 224
                                E  + K YNL          DV +Y V+  G+C     +
Sbjct: 602 ---------------------EDLLVKGYNL----------DVYAYTVMIQGFCDKGLFD 630

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
           +AL +L +M + G  P+  TY I++   F   + + A +   EM  R
Sbjct: 631 EALALLSKMEENGCIPDAKTYEIIILSLFEKDENDMAEKLLREMIMR 677


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 113/397 (28%), Positives = 199/397 (50%), Gaps = 39/397 (9%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            LV RM      P   T+ ++       G  D A+ +   M        +  FNTI+D L
Sbjct: 173 ALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSL 232

Query: 184 CKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CK + V+ A NLFK    K  + +V++Y+ + +  C   R + A ++L +M+++ +NPNL
Sbjct: 233 CKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNL 292

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            T+N ++  + + G+  EA + + +M KR  + D+ TY ++V+GF +   + +A+ +F+ 
Sbjct: 293 VTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEF 352

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           MV+    P V TYN +I+  CK   VE+   +F EM  +G + ++ TY  +I+GL H G+
Sbjct: 353 MVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGD 412

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG------------- 409
            + A +   +M  D   P++ TY+IL+   C+ G++E+ LE+F+ M              
Sbjct: 413 CDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTT 472

Query: 410 --SGVC--------------------LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
              G+C                     PN+ TYN +IS +  ++    L  A  LL +M 
Sbjct: 473 MIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRL---LQEAYALLKKMK 529

Query: 448 DRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484
           + G +P   T+N ++   L  G++  + E++R    C
Sbjct: 530 EDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSC 566



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 182/379 (48%), Gaps = 4/379 (1%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           S   F+  +   A+++ +  V +L  +M+ L +     T+ I+   +    +   A+ + 
Sbjct: 46  SIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALL 105

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLV 220
             M + G   S+ + +++L+  C  K++  A  L  ++    ++ D I++  + +G  L 
Sbjct: 106 GKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH 165

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
            + ++A+ ++  MV RG  PNL TY +V+ G  + G  + A     +M+  K E DVV +
Sbjct: 166 NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIF 225

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
            TI+        +  A N+F  M   G+ P+V TY+++I  LC      +A  +  +M+ 
Sbjct: 226 NTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE 285

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           K   PN  T+N +I      G+   A +    M     +P++ TYN L+  FC    +++
Sbjct: 286 KKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDK 345

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
             ++FE M S  C P++ TYN LI      K+ +D     +L  EM  RG +    T+  
Sbjct: 346 AKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVED---GTELFREMSHRGLVGDTVTYTT 402

Query: 461 VLNGLLLIGNQGLAKEILR 479
           ++ GL   G+   A+++ +
Sbjct: 403 LIQGLFHDGDCDNAQKVFK 421



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 135/272 (49%), Gaps = 3/272 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  ID   +   +     L   M   S+ P   T+  +   +    + D+A ++F  M
Sbjct: 294 TFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFM 353

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKR 222
               C   + ++NT++   CK K+VE    LF+    RG    D ++Y  +  G      
Sbjct: 354 VSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRG-LVGDTVTYTTLIQGLFHDGD 412

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
            + A +V K+MV  G+ P++ TY+I+L G    G++E+A   F  M+K + ++D+  YTT
Sbjct: 413 CDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTT 472

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++ G    G++    ++F  +   GV P+V TYN MI  LC K  ++ A  + ++M   G
Sbjct: 473 MIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDG 532

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
            +PNS TYN +IR     G+   + E +  M+
Sbjct: 533 PLPNSGTYNTLIRAHLRDGDKAASAELIREMR 564



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 140/282 (49%), Gaps = 4/282 (1%)

Query: 186 EKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
           + K++ A  LF  + + +    ++ +N + +    +K+ +  + + ++M    +   L T
Sbjct: 25  DMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYT 84

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           YNI++  + R  QI  A     +M K   E  +VT +++++G+     I  A  + D MV
Sbjct: 85  YNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMV 144

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
             G  P   T+  +I  L   +    A+ + + MV +G  PN  TY VV+ GLC  G+ +
Sbjct: 145 EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTD 204

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
            AL  + +M+  + E +V  +N +I   C    ++  L LF++M +    PN+ TY+ LI
Sbjct: 205 LALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLI 264

Query: 425 SSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
           S +    +  D   A +LL +M+++   P   TFN +++  +
Sbjct: 265 SCLCSYGRWSD---ASQLLSDMIEKKINPNLVTFNALIDAFV 303



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/230 (20%), Positives = 100/230 (43%), Gaps = 3/230 (1%)

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
           R  +     Y  +L+      ++++A   F  M K +    +V +  ++     + +   
Sbjct: 6   RAFSSGSGDYREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDV 65

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
             ++ + M    ++  + TYN +I   C++  +  A+ +  +M+  GY P+  T + ++ 
Sbjct: 66  VISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLN 125

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
           G CH   +  A+  V +M +    P+  T+  LI       +    + L ++M    C P
Sbjct: 126 GYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQP 185

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           NL TY ++++ +  R  +D   +A  LL +M           FN +++ L
Sbjct: 186 NLVTYGVVVNGLCKRGDTD---LALNLLNKMEAAKIEADVVIFNTIIDSL 232



 Score = 45.1 bits (105), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 3/125 (2%)

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
           G+ +   S  Y  ++R   H  +++ A+   G M      P++  +N L+       + +
Sbjct: 5   GRAFSSGSGDYREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFD 64

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
             + L EKM     +  L TYNILI+  F R+    L +A  LL +M+  G+ P   T +
Sbjct: 65  VVISLGEKMQRLEIVHGLYTYNILINC-FCRRSQISLALA--LLGKMMKLGYEPSIVTLS 121

Query: 460 RVLNG 464
            +LNG
Sbjct: 122 SLLNG 126


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 181/343 (52%), Gaps = 4/343 (1%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            LV RM      P   T+ ++       G  D A+ +   M        +  FNTI+D L
Sbjct: 211 ALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSL 270

Query: 184 CKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CK + V+ A NLFK    K  + +V++Y+ + +  C   R + A ++L +M+++ +NPNL
Sbjct: 271 CKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNL 330

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            T+N ++  + + G+  EA + + +M KR  + D+ TY ++V+GF +   + +A+ +F+ 
Sbjct: 331 VTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEF 390

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           MV+    P V TYN +I+  CK   VE+   +F EM  +G + ++ TY  +I+GL H G+
Sbjct: 391 MVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGD 450

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
            + A +   +M  D   P++ TY+IL+   C+ G++E+ LE+F+ M       ++  Y  
Sbjct: 451 CDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTT 510

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           +I  M    K DD      L   +  +G  P   T+N +++GL
Sbjct: 511 MIEGMCKAGKVDD---GWDLFCSLSLKGVKPNVVTYNTMISGL 550



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 182/379 (48%), Gaps = 4/379 (1%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           S   F+  +   A+++ +  V +L  +M+ L +     T+ I+   +    +   A+ + 
Sbjct: 84  SIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALL 143

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLV 220
             M + G   S+ + +++L+  C  K++  A  L  ++    ++ D I++  + +G  L 
Sbjct: 144 GKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH 203

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
            + ++A+ ++  MV RG  PNL TY +V+ G  + G  + A     +M+  K E DVV +
Sbjct: 204 NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIF 263

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
            TI+        +  A N+F  M   G+ P+V TY+++I  LC      +A  +  +M+ 
Sbjct: 264 NTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE 323

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           K   PN  T+N +I      G+   A +    M     +P++ TYN L+  FC    +++
Sbjct: 324 KKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDK 383

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
             ++FE M S  C P++ TYN LI      K+ +D     +L  EM  RG +    T+  
Sbjct: 384 AKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVED---GTELFREMSHRGLVGDTVTYTT 440

Query: 461 VLNGLLLIGNQGLAKEILR 479
           ++ GL   G+   A+++ +
Sbjct: 441 LIQGLFHDGDCDNAQKVFK 459



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 156/341 (45%), Gaps = 36/341 (10%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           F+  ID   + R       L   M++  + P   T++ +     S G+   A ++   M 
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 322

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTN 224
           E     +L +FN ++D   KE K  +A  L+  + +     D+ +YN + NG+C+  R +
Sbjct: 323 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLD 382

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           KA ++ + MV +   P++ TYN ++KG+ ++ ++E+    F EM  R    D VTYTT++
Sbjct: 383 KAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 442

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG---- 340
            G    G+   A+ VF  MV+ GV P + TY+ ++  LC    +E A+ VF+ M      
Sbjct: 443 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIK 502

Query: 341 -------------------------------KGYMPNSTTYNVVIRGLCHTGEMERALEF 369
                                          KG  PN  TYN +I GLC    ++ A   
Sbjct: 503 LDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYAL 562

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           + +MK+D   PN  TYN LIR     G+     EL  +M S
Sbjct: 563 LKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRS 603



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 135/272 (49%), Gaps = 3/272 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  ID   +   +     L   M   S+ P   T+  +   +    + D+A ++F  M
Sbjct: 332 TFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFM 391

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKR 222
               C   + ++NT++   CK K+VE    LF+    RG    D ++Y  +  G      
Sbjct: 392 VSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRG-LVGDTVTYTTLIQGLFHDGD 450

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
            + A +V K+MV  G+ P++ TY+I+L G    G++E+A   F  M+K + ++D+  YTT
Sbjct: 451 CDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTT 510

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++ G    G++    ++F  +   GV P+V TYN MI  LC K  ++ A  + ++M   G
Sbjct: 511 MIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDG 570

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
            +PNS TYN +IR     G+   + E +  M+
Sbjct: 571 PLPNSGTYNTLIRAHLRDGDKAASAELIREMR 602



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 140/282 (49%), Gaps = 4/282 (1%)

Query: 186 EKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
           + K++ A  LF  + + +    ++ +N + +    +K+ +  + + ++M    +   L T
Sbjct: 63  DMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYT 122

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           YNI++  + R  QI  A     +M K   E  +VT +++++G+     I  A  + D MV
Sbjct: 123 YNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMV 182

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
             G  P   T+  +I  L   +    A+ + + MV +G  PN  TY VV+ GLC  G+ +
Sbjct: 183 EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTD 242

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
            AL  + +M+  + E +V  +N +I   C    ++  L LF++M +    PN+ TY+ LI
Sbjct: 243 LALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLI 302

Query: 425 SSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
           S +    +  D   A +LL +M+++   P   TFN +++  +
Sbjct: 303 SCLCSYGRWSD---ASQLLSDMIEKKINPNLVTFNALIDAFV 341



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/230 (20%), Positives = 100/230 (43%), Gaps = 3/230 (1%)

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
           R  +     Y  +L+      ++++A   F  M K +    +V +  ++     + +   
Sbjct: 44  RAFSSGSGDYREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDV 103

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
             ++ + M    ++  + TYN +I   C++  +  A+ +  +M+  GY P+  T + ++ 
Sbjct: 104 VISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLN 163

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
           G CH   +  A+  V +M +    P+  T+  LI       +    + L ++M    C P
Sbjct: 164 GYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQP 223

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           NL TY ++++ +  R  +D   +A  LL +M           FN +++ L
Sbjct: 224 NLVTYGVVVNGLCKRGDTD---LALNLLNKMEAAKIEADVVIFNTIIDSL 270



 Score = 45.1 bits (105), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 3/125 (2%)

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
           G+ +   S  Y  ++R   H  +++ A+   G M      P++  +N L+       + +
Sbjct: 43  GRAFSSGSGDYREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFD 102

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
             + L EKM     +  L TYNILI+  F R+    L +A  LL +M+  G+ P   T +
Sbjct: 103 VVISLGEKMQRLEIVHGLYTYNILINC-FCRRSQISLALA--LLGKMMKLGYEPSIVTLS 159

Query: 460 RVLNG 464
            +LNG
Sbjct: 160 SLLNG 164


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 186/365 (50%), Gaps = 4/365 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+ +M      P   T+  +      +G+   A+++   M E   +     ++ I+D LC
Sbjct: 313 LIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLC 372

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K   ++ A+NLF     K    ++I+YN++  G+C   R +   ++L++M+ R +NPN+ 
Sbjct: 373 KHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVV 432

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           T+++++  + + G++ EA     EM  R    D +TYT+++ GF     + +A  + D M
Sbjct: 433 TFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLM 492

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           V+ G  P++ T+N +I   CK + +++ + +F +M  +G + ++ TYN +I+G C  G++
Sbjct: 493 VSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKL 552

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             A E    M   +  PN+ TY IL+   CD GE E+ LE+FEK+       ++  YNI+
Sbjct: 553 NVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNII 612

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I  M    K DD   A  L   +  +G  P   T+N ++ GL   G    A+ + R    
Sbjct: 613 IHGMCNASKVDD---AWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEE 669

Query: 484 CGRLP 488
            G  P
Sbjct: 670 DGHAP 674



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 105/381 (27%), Positives = 185/381 (48%), Gaps = 4/381 (1%)

Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           AH+  +    I+   R R     ++ + ++  L   P   TF+ +       G+   A++
Sbjct: 218 AHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALE 277

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWC 218
           +   M E G +  L + NT+++ LC   K  +A  L  K+     + + ++Y  + N  C
Sbjct: 278 LVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMC 337

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
              +T  A+E+L++M +R +  +   Y+I++ G  + G ++ A+  F EM+ +    +++
Sbjct: 338 KSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNII 397

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TY  ++ GF   G       +   M+   + P+V T++ +I    K+  +  A  + +EM
Sbjct: 398 TYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEM 457

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
           + +G  P++ TY  +I G C    +++A + V  M    C+PN++T+NILI  +C A  I
Sbjct: 458 IHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRI 517

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           + GLELF KM     + +  TYN LI       K   L VA +L  EMV R   P   T+
Sbjct: 518 DDGLELFRKMSLRGVVADTVTYNTLIQGFCELGK---LNVAKELFQEMVSRKVPPNIVTY 574

Query: 459 NRVLNGLLLIGNQGLAKEILR 479
             +L+GL   G    A EI  
Sbjct: 575 KILLDGLCDNGESEKALEIFE 595



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 168/328 (51%), Gaps = 6/328 (1%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-- 197
           T+ I+   + +AG+ D   K+   M +     ++ +F+ ++D   KE K+ +A  L K  
Sbjct: 398 TYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEM 457

Query: 198 VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
           + RG    D I+Y  + +G+C     +KA +++  MV +G +PN+ T+NI++ GY +A +
Sbjct: 458 IHRG-IAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANR 516

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           I++    F +M  R    D VTY T++ GF  +G++  A+ +F  MV+  V P++ TY  
Sbjct: 517 IDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKI 576

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           ++  LC     E A+ +FE++       +   YN++I G+C+  +++ A +    +    
Sbjct: 577 LLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKG 636

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
            +P V+TYNI+I   C  G +     LF KM      P+  TYNILI +        D  
Sbjct: 637 VKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHL---GDGDAT 693

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            + KL+ E+   GF     T   V++ L
Sbjct: 694 KSVKLIEELKRCGFSVDASTIKMVIDML 721



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 156/312 (50%), Gaps = 6/312 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M    + P   TF+++ + +V  GK   A ++   M   G      ++ +++D  C
Sbjct: 418 LLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFC 477

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           KE  ++KA  +  +   K    ++ ++N++ NG+C   R +  LE+ ++M  RG+  +  
Sbjct: 478 KENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTV 537

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN +++G+   G++  A   F EM  RK   ++VTY  ++ G    GE ++A  +F+ +
Sbjct: 538 TYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKI 597

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
               +   +  YN +I  +C    V++A  +F  +  KG  P   TYN++I GLC  G +
Sbjct: 598 EKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPL 657

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             A     +M++D   P+  TYNILIR     G+  + ++L E++    C  ++D   I 
Sbjct: 658 SEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKR--CGFSVDASTI- 714

Query: 424 ISSMFVRKKSDD 435
              M +   SDD
Sbjct: 715 --KMVIDMLSDD 724



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 145/291 (49%), Gaps = 4/291 (1%)

Query: 188 KVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
           K + A +LF+ +   +    VI ++ + +     K+ +  L + K+M  +G+  NL T +
Sbjct: 166 KADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLS 225

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
           I++  + R  ++  A+    ++ K   E + +T++T+++G  + G +  A  + D MV  
Sbjct: 226 IMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEM 285

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G  P + T N ++  LC       A+L+ ++MV  G  PN+ TY  V+  +C +G+   A
Sbjct: 286 GHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALA 345

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
           +E + +M++   + +   Y+I+I   C  G ++    LF +M       N+ TYNILI  
Sbjct: 346 MELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGG 405

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
                + DD     KLL +M+ R   P   TF+ +++  +  G    A+E+
Sbjct: 406 FCNAGRWDD---GAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEEL 453


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 107/366 (29%), Positives = 189/366 (51%), Gaps = 4/366 (1%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            L+ RM +    P   T+ ++       G  D A  +   M +      +  +NTI+D L
Sbjct: 2   ALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGL 61

Query: 184 CKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CK K ++ A NLFK    K  + +V++Y+ + +  C   R + A  +L +M++R +NP++
Sbjct: 62  CKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDV 121

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            T++ ++  + + G++ EA + + EM KR  +  +VTY+++++GF +   +  A+ +F+ 
Sbjct: 122 FTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEF 181

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           MV+    P V TYN +I+  CK   VE  + VF EM  +G + N+ TYN++I+GL   G+
Sbjct: 182 MVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGD 241

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
            + A E    M  D   PN+ TYN L+   C  G++E+ + +FE +      P + TYNI
Sbjct: 242 CDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNI 301

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           +I  M    K +D      L   +  +G  P    +N +++G    G++  A  + +   
Sbjct: 302 MIEGMCKAGKVED---GWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 358

Query: 483 RCGRLP 488
             G LP
Sbjct: 359 EDGTLP 364



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 184/379 (48%), Gaps = 6/379 (1%)

Query: 90  FNILSYHPTYAHSPSS--FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
           FN+L+        P    ++  ID   + +       L   M++  + P   T++ +   
Sbjct: 36  FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISC 95

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKAD 206
             + G+   A ++   M E      + +F+ ++D   KE K+ +A  L+ ++ +      
Sbjct: 96  LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 155

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           +++Y+ + NG+C+  R ++A ++ + MV +   P++ TYN ++KG+ +  ++EE    F 
Sbjct: 156 IVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFR 215

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           EM +R    + VTY  ++ G    G+   A+ +F  MV+ GV P++ TYN ++  LCK  
Sbjct: 216 EMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNG 275

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            +E A++VFE +      P   TYN++I G+C  G++E   +    +     +P+V  YN
Sbjct: 276 KLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYN 335

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            +I  FC  G  E    LF++M     LPN   YN LI +   R +  D   + +L+ EM
Sbjct: 336 TMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRA---RLRDGDREASAELIKEM 392

Query: 447 VDRGFMPRKFTFNRVLNGL 465
              GF     T   V N L
Sbjct: 393 RSCGFAGDASTIGLVTNML 411



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 128/253 (50%), Gaps = 3/253 (1%)

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
           + ++  MV +G  P+L TY +V+ G  + G  + A+    +M++ K E  V+ Y TI+ G
Sbjct: 1   MALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDG 60

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
                 +  A N+F  M   G+ P+V TY+++I  LC      +A  +  +M+ +   P+
Sbjct: 61  LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPD 120

Query: 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
             T++ +I      G++  A +    M     +P++ TY+ LI  FC    ++   ++FE
Sbjct: 121 VFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFE 180

Query: 407 KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
            M S  C P++ TYN LI      K+ ++ +   ++  EM  RG +    T+N ++ GL 
Sbjct: 181 FMVSKHCFPDVVTYNTLIKGFCKYKRVEEGM---EVFREMSQRGLVGNTVTYNILIQGLF 237

Query: 467 LIGNQGLAKEILR 479
             G+  +A+EI +
Sbjct: 238 QAGDCDMAQEIFK 250


>gi|224093900|ref|XP_002310039.1| predicted protein [Populus trichocarpa]
 gi|222852942|gb|EEE90489.1| predicted protein [Populus trichocarpa]
          Length = 507

 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 119/426 (27%), Positives = 217/426 (50%), Gaps = 14/426 (3%)

Query: 42  ALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRL-WNHA--LKALHFFNILSYHPT 98
           A+ ++I  ST  + L Q+L    +  +  L+D+++KR+ ++H   L+AL FFN  +    
Sbjct: 45  AIYNIISNSTSSQNLKQSLKSTGVFLSNDLIDKVLKRVRFSHGNPLQALDFFNFTADRRG 104

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLG-PTQKTFAIIAERYVSAGKADRA 157
           + HS  S D  + +  R R +  +W ++  +K       T +T  ++  R          
Sbjct: 105 FYHSSYSLDTMLYILGRSRKFDHIWDVLIDIKRKDRNLITPRTLQVVLGRVAKVCSVRMT 164

Query: 158 VKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGW 217
           V+ F            + FN +L  LC+EK +  A N++   +  F+ ++ ++N++ +GW
Sbjct: 165 VESFWKFKRLVPVFDTSCFNALLRTLCQEKSMSDARNVYHHLKKGFRPNLQTFNILLSGW 224

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
              K + +A    +EM + G+ P++ TYN ++  + +  ++E+A+     M++     DV
Sbjct: 225 ---KSSEEAELFYEEMKELGVKPDIVTYNSLIDVFCKGRELEKAYGVVARMREEDILPDV 281

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           +TYT+I+ G G+VG+  +AR++   M   G  P VA YNA+I+  C    ++ A  +  E
Sbjct: 282 ITYTSIIGGLGLVGQPDKARDMLKEMKEHGCYPDVAAYNAVIRNYCIAKRLDAAYSLMAE 341

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M  KG  PN+T+YN+  R    + ++  + +F GRM D  C PN Q+   LI+ F    +
Sbjct: 342 MESKGMSPNATSYNLFFRVFSWSNDLRNSWDFYGRMMDAGCLPNTQSCMFLIKLFKRHEK 401

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD--DLLVAGKLLIEMVDRGFMPRK 455
           +E  L+L+  M          +Y IL+S + +    D   L+ A K  ++MV++G  P  
Sbjct: 402 VEMALQLWNDMVE----KGFGSY-ILVSDVLLGMLCDMGKLVEAEKCFLQMVEKGHKPSN 456

Query: 456 FTFNRV 461
            +F R+
Sbjct: 457 VSFRRI 462


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 120/433 (27%), Positives = 207/433 (47%), Gaps = 74/433 (17%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            LV +M  +   P   TF  +        KA  AV +   M + GC+  L ++ T+++ L
Sbjct: 174 ALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGL 233

Query: 184 CKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALE-------------- 228
           CK   ++ A +L K   +GK +ADV+ YN I +G C  K  + AL               
Sbjct: 234 CKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDV 293

Query: 229 ---------------------VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
                                +L +M++R +NPN+ T++ ++  + + G++ EA + + E
Sbjct: 294 FTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDE 353

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M KR  + D+ TY+++++GF +   +  A+++F+ M++    P+V TY+ +I+  CK   
Sbjct: 354 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKR 413

Query: 328 VE-----------------------------------NAILVFEEMVGKGYMPNSTTYNV 352
           VE                                   NA +VF++MV  G  PN  TYN+
Sbjct: 414 VEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNI 473

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           ++ GLC  G++ +A+     ++    EP++ TYNI+I   C AG++E G ELF  +    
Sbjct: 474 LLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKG 533

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
             PN+  YN +IS  F RK S +   A  LL +M + G +P   T+N ++   L  G++ 
Sbjct: 534 VSPNVIAYNTMISG-FCRKGSKE--EADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDRE 590

Query: 473 LAKEILRLQSRCG 485
            + E+++    CG
Sbjct: 591 ASAELIKEMRSCG 603



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 106/361 (29%), Positives = 180/361 (49%), Gaps = 4/361 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           ++  ID   + +       L   M +  + P   T++ +     + G+   A ++   M 
Sbjct: 261 YNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMI 320

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTN 224
           E     ++ +F+ ++D   KE K+ +A  L+ ++ +     D+ +Y+ + NG+C+  R +
Sbjct: 321 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 380

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           +A  + + M+ +   PN+ TY+ ++KG+ +A ++EE    F EM +R    + VTYTT++
Sbjct: 381 EAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLI 440

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
           HGF    +   A+ VF  MV+ GV P++ TYN ++  LCK   +  A++VFE +      
Sbjct: 441 HGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTME 500

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           P+  TYN++I G+C  G++E   E    +      PNV  YN +I  FC  G  E    L
Sbjct: 501 PDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSL 560

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
            +KM     LPN  TYN LI +   R +  D   + +L+ EM   GF     T   V N 
Sbjct: 561 LKKMKEDGPLPNSGTYNTLIRA---RLRDGDREASAELIKEMRSCGFAGDASTIGLVTNM 617

Query: 465 L 465
           L
Sbjct: 618 L 618



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 181/380 (47%), Gaps = 17/380 (4%)

Query: 107 DHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE 166
           D A+DL   +   R   ++V   K LS       F ++    +S G+          M  
Sbjct: 65  DDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELV----ISLGE---------QMQT 111

Query: 167 HGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNK 225
            G    L +++  ++  C+  ++  A   L K+ +  ++ D+++ + + NG+C  KR + 
Sbjct: 112 LGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISD 171

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
           A+ ++ +MV+ G  P+  T+  ++ G F   +  EA     +M +R C+ D+VTY T+V+
Sbjct: 172 AVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVN 231

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
           G    G+I  A ++   M  G +   V  YN +I  LCK   +++A+ +F EM  KG  P
Sbjct: 232 GLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRP 291

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           +  TY+ +I  LC+ G    A   +  M + +  PNV T++ LI  F   G++    +L+
Sbjct: 292 DVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLY 351

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           ++M      P++ TY+ LI+   +  + D+   A  +   M+ +   P   T++ ++ G 
Sbjct: 352 DEMIKRSIDPDIFTYSSLINGFCMHDRLDE---AKHMFELMISKDCFPNVVTYSTLIKGF 408

Query: 466 LLIGNQGLAKEILRLQSRCG 485
                     E+ R  S+ G
Sbjct: 409 CKAKRVEEGMELFREMSQRG 428



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 159/339 (46%), Gaps = 4/339 (1%)

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG- 201
           I+  R     K D AV +F  M +     S+  FN +L  + K  K E   +L +  +  
Sbjct: 53  ILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTL 112

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
               D+ +Y++  N +C   + + AL VL +M+  G  P++ T + +L GY  + +I +A
Sbjct: 113 GISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDA 172

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
                +M +   + D  T+TT++HG  +  +   A  + D MV  G  P + TY  ++  
Sbjct: 173 VALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNG 232

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           LCK+  ++ A+ + ++M       +   YN +I GLC    M+ AL     M +    P+
Sbjct: 233 LCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPD 292

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
           V TY+ LI   C+ G       L   M      PN+ T++ LI + FV  K   L+ A K
Sbjct: 293 VFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDA-FV--KEGKLVEAEK 349

Query: 442 LLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           L  EM+ R   P  FT++ ++NG  +      AK +  L
Sbjct: 350 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFEL 388


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 121/390 (31%), Positives = 184/390 (47%), Gaps = 45/390 (11%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           PT KT+ ++ +    AG+ + A +IF+ M  +GCR     +  ++  LCK  K E+AY L
Sbjct: 110 PTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYAL 169

Query: 196 FKVFRGKFK-----ADVISYNVIANGWCLVKRTNKALEVLK-EMVDRGLNPNLTTYNIVL 249
           +K    +        DV++Y  + +G C   R  +A +V   E V+RG  P+  TY  ++
Sbjct: 170 YKEANARKHHATAVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSII 229

Query: 250 KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
            G  + G++EE    F EM+ R  E D VTY  ++ GF     I +A  V+  M+  G +
Sbjct: 230 DGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTV 289

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
            S  TYN ++  LCK   V  A   F  M  +G +    TY+ ++ G C  G +  A+E 
Sbjct: 290 VSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVEL 349

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIER----------------------------- 400
             RM D  CEPN+ +YNI+IR  C AG++ +                             
Sbjct: 350 FRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQ 409

Query: 401 -------GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
                  G+ELFE M S    PNL +Y+IL+  +    ++  L VA ++  EMV RG  P
Sbjct: 410 RLDTVSDGVELFESMVSQGTSPNLHSYSILMDGIC---RAGGLEVALEIFREMVSRGVAP 466

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
               FN ++  L + G    A E+ R   R
Sbjct: 467 DVVVFNTLIRWLCIAGRVDEALEVFRELER 496



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 110/406 (27%), Positives = 170/406 (41%), Gaps = 79/406 (19%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P    F ++        + D A  +       GC     ++N  +D LCK ++V+ A+ L
Sbjct: 5   PDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQL 64

Query: 196 FKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            K     K     ++Y  + +G     R ++A+ VL++MV++G +P L TY +V+ G  +
Sbjct: 65  LKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSK 124

Query: 255 AGQIEEAWRFFLEMKKRKCE---------------------------------------I 275
           AG++EEA R F++M    C                                         
Sbjct: 125 AGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVP 184

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDG-MVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
           DVVTYT+++ G    G I  AR VFD   V  G +P   TY ++I  LCK   VE     
Sbjct: 185 DVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCER 244

Query: 335 FEEMVGKGYMPN-----------------------------------STTYNVVIRGLCH 359
           F EM  +GY P+                                   + TYN+++ GLC 
Sbjct: 245 FHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCK 304

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419
            G +  A      M++  C   V TY+ L+  FC  G +   +ELF +M    C PNL +
Sbjct: 305 AGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVS 364

Query: 420 YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           YNI+I  +    ++  L  A     +++ R   P  +TFN  L+GL
Sbjct: 365 YNIIIRGLC---RAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGL 407



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 170/333 (51%), Gaps = 7/333 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMH-EHGCRQSLNSFNTILDLLCKEKKVEKAYN 194
           P   T+  + +    AG+   A ++F     E G      ++ +I+D LCK  +VE+   
Sbjct: 184 PDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCE 243

Query: 195 LFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
            F   R + ++ D ++Y  + +G+   K   KA  V ++M+  G   +  TYNI+L G  
Sbjct: 244 RFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLC 303

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
           +AG++ EA+  FL M++R C   VVTY+ ++ GF   G +  A  +F  M++ G  P++ 
Sbjct: 304 KAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLV 363

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT-GEMERALEFVGR 372
           +YN +I+ LC+   +  A   FE+++ +   P+  T+N  + GLC     +   +E    
Sbjct: 364 SYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVELFES 423

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           M      PN+ +Y+IL+   C AG +E  LE+F +M S    P++  +N LI  + +  +
Sbjct: 424 MVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRWLCIAGR 483

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            D+ L   + L    +R   P  +++  +L+GL
Sbjct: 484 VDEALEVFREL----ERRSAPDAWSYWSLLDGL 512



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 137/267 (51%), Gaps = 10/267 (3%)

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           D++++ V+ NG C  KR ++A  VL+  V  G  P+  TYN+ + G  +A ++++A++  
Sbjct: 6   DMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLL 65

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
            +M ++KC    VTYT +V G    G +  A  V + MV  G  P++ TY  +I  L K 
Sbjct: 66  KKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKA 125

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL----EFVGRMKDDECEPN 381
             VE A  +F +M+G G  P++  Y  +I+GLC +G+ E A     E   R       P+
Sbjct: 126 GRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPD 185

Query: 382 VQTYNILIRYFCDAGEIERGLELF--EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA 439
           V TY  LI   C AG I    ++F  E +  G  +P+  TY  +I  +    + ++    
Sbjct: 186 VVTYTSLIDGLCKAGRILEARQVFDDEAVERGF-IPDAVTYTSIIDGLCKLGRVEE---G 241

Query: 440 GKLLIEMVDRGFMPRKFTFNRVLNGLL 466
            +   EM +RG+ P   T+  +++G +
Sbjct: 242 CERFHEMRNRGYEPDAVTYAALIDGFM 268



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 113/242 (46%), Gaps = 20/242 (8%)

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
           +P++  + +V+ G  R  +++EA+       +  CE D VTY   + G      +  A  
Sbjct: 4   SPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQ 63

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
           +   M     LP+  TY A++  L K   ++ A+ V E+MV KG  P   TY VVI GL 
Sbjct: 64  LLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLS 123

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS----GVCL 414
             G +E A      M  + C P+   Y  LI+  C +G+ E    L+++  +       +
Sbjct: 124 KAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAV 183

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLL-------IEMVDRGFMPRKFTFNRVLNGLLL 467
           P++ TY  LI         D L  AG++L        E V+RGF+P   T+  +++GL  
Sbjct: 184 PDVVTYTSLI---------DGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCK 234

Query: 468 IG 469
           +G
Sbjct: 235 LG 236



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 91/198 (45%), Gaps = 38/198 (19%)

Query: 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF 196
           T  T++ + + + S G    AV++F  M + GC  +L S+N I+  LC+  K+ KAY  F
Sbjct: 326 TVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYF 385

Query: 197 -KVFRGKFKADVI------------------------------------SYNVIANGWCL 219
            K+ + +   DV                                     SY+++ +G C 
Sbjct: 386 EKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICR 445

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
                 ALE+ +EMV RG+ P++  +N +++    AG+++EA   F E+++R    D  +
Sbjct: 446 AGGLEVALEIFREMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERRSAP-DAWS 504

Query: 280 YTTIVHGFGVVGEIKRAR 297
           Y +++ G      ++ AR
Sbjct: 505 YWSLLDGLSRCERMEEAR 522



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 55/129 (42%)

Query: 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ 171
           L  RL        L   M S    P   +++I+ +    AG  + A++IF  M   G   
Sbjct: 407 LCQRLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAP 466

Query: 172 SLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLK 231
            +  FNT++  LC   +V++A  +F+    +   D  SY  + +G    +R  +A  +  
Sbjct: 467 DVVVFNTLIRWLCIAGRVDEALEVFRELERRSAPDAWSYWSLLDGLSRCERMEEARLLSF 526

Query: 232 EMVDRGLNP 240
            M  +G  P
Sbjct: 527 HMKLQGCAP 535


>gi|449484422|ref|XP_004156879.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Cucumis sativus]
          Length = 529

 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 129/450 (28%), Positives = 213/450 (47%), Gaps = 10/450 (2%)

Query: 28  TSPAPLPPAAADP------AALASLILTSTDPR-TLTQTLHCPSLHWTPQLVDQIIKRLW 80
           TS A    A +DP      + ++ ++    +P   L   L   S + +  LV+Q++KR  
Sbjct: 33  TSFATEARAGSDPTLPFLVSEISRILSDRRNPHHDLEVGLSSFSSNVSTDLVEQVLKRCK 92

Query: 81  NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWT-LVHRMKSLSLGPTQK 139
           N A  A  FF      P +  S  S+   +D+      +  +W  L+   ++ S   T +
Sbjct: 93  NIAFSAHRFFLWAKRIPGFEPSDDSYHIVVDILGGSGQFAILWDFLIEIRETRSSVITHE 152

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
            F  +   Y  A     A++ F  M E G R  ++  + +L  LCK K V  A   F   
Sbjct: 153 LFWHVFTAYSRADLPQDAIRAFNRMGEFGIRAGVDDLDKLLYTLCKRKHVAHAQQFFDKV 212

Query: 200 RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
           +  F   V +Y+++  GW +V  +N A +V  EM +RG   ++  YN +L+   + G+ +
Sbjct: 213 KSVFNPSVKTYSILTRGWGVVGDSNNAQKVFDEMRERGCLIDVLAYNSLLEALCKGGKRD 272

Query: 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319
           EA++ FLEM     + D  TY+  +       ++     V +      +LP+V TYN +I
Sbjct: 273 EAYKMFLEMDSNGVDPDADTYSIFIRSSCQENDLHTVYRVLERTKRKNLLPNVFTYNCVI 332

Query: 320 QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
           + LCK  +VE A  + +EM+ +G  P++ +YN +    C   E+  AL  V RM  D+C 
Sbjct: 333 KKLCKDQNVEEAYQILDEMIERGVTPDTWSYNAIQAYHCDHSEVNSALNLVKRMDRDKCV 392

Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA 439
           P+  TYN++++     G  +R  E++E MG     P++ TY ++I   F +KK   L  A
Sbjct: 393 PDKHTYNMVLKLLVRVGRFDRANEVWESMGKRGFYPSVSTYAVMIHG-FCKKKW-KLEEA 450

Query: 440 GKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
            K    M+D G  P   T   + + LL IG
Sbjct: 451 CKYFEMMIDEGIPPYIATVELLRDRLLGIG 480



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 113/245 (46%), Gaps = 9/245 (3%)

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI--- 293
           G  P+  +Y+IV+     +GQ    W F +E+++ +    V+T+    H F         
Sbjct: 110 GFEPSDDSYHIVVDILGGSGQFAILWDFLIEIRETRSS--VITHELFWHVFTAYSRADLP 167

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           + A   F+ M   G+   V   + ++  LCK+  V +A   F++ V   + P+  TY+++
Sbjct: 168 QDAIRAFNRMGEFGIRAGVDDLDKLLYTLCKRKHVAHAQQFFDK-VKSVFNPSVKTYSIL 226

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
            RG    G+   A +    M++  C  +V  YN L+   C  G+ +   ++F +M S   
Sbjct: 227 TRGWGVVGDSNNAQKVFDEMRERGCLIDVLAYNSLLEALCKGGKRDEAYKMFLEMDSNGV 286

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGL 473
            P+ DTY+I I S     + +DL    ++L     +  +P  FT+N V+  L    N   
Sbjct: 287 DPDADTYSIFIRSSC---QENDLHTVYRVLERTKRKNLLPNVFTYNCVIKKLCKDQNVEE 343

Query: 474 AKEIL 478
           A +IL
Sbjct: 344 AYQIL 348


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  191 bits (484), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 117/408 (28%), Positives = 194/408 (47%), Gaps = 42/408 (10%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           ++H +D       ++ +  L   MK   L P   T+ I+ +      + D A K+F+ M 
Sbjct: 147 YNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMS 206

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNK 225
             GC     ++ T++  LCK  K++ A  L     G+FK  V  YN + +G C   R   
Sbjct: 207 NKGCPPDAVTYTTMVSSLCKAGKIDDAREL----AGRFKPSVPVYNALIDGMCKEGRIEV 262

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
           A+++L EM+D G++PN+ +Y+ ++     +G +E A+  F +M  R C+ ++ T+T ++ 
Sbjct: 263 AIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIK 322

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
           G  + G++  A +++  M+  G  P+V  YN +I  LC   S+E A+ V ++M   G +P
Sbjct: 323 GCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLP 382

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY-------------------- 385
           N TTY+++I G   +G++  A E   RM    C PNV TY                    
Sbjct: 383 NVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLV 442

Query: 386 ---------------NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
                          N  I+  C  G +E  ++L E+M    CLPN+ TYN L+ ++F  
Sbjct: 443 EKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRM 502

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
            K ++   A  L  E+  R   P   T+N VL G    G  G A ++ 
Sbjct: 503 NKYEE---AFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLF 547



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 118/438 (26%), Positives = 196/438 (44%), Gaps = 44/438 (10%)

Query: 87  LHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAE 146
           L FF+ ++    + H+ S++   I+   R  +   V  ++ +MK   +   +  F  I  
Sbjct: 58  LGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIIN 117

Query: 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKA 205
            Y   G A++A+K+F  + E GC+ ++  +N +LD L  E K +    L+  + +     
Sbjct: 118 GYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIP 177

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           +V +YN++    C   R + A ++  EM ++G  P+  TY  ++    +AG+I++A    
Sbjct: 178 NVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELA 237

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
              K       V  Y  ++ G    G I+ A  +   M++ GV P+V +Y+ +I  LC  
Sbjct: 238 GRFKP-----SVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVS 292

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
            +VE A  +F +M  +G   N  T+  +I+G    G++  AL+    M  D CEPNV  Y
Sbjct: 293 GNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAY 352

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK---- 441
           N LI   C  G +E  L++ ++M    CLPN+ TY+ILI       KS DL+ A +    
Sbjct: 353 NTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGF---AKSGDLVGASETWNR 409

Query: 442 -------------------------------LLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
                                          L+ +M   G  P   TFN  + GL   G 
Sbjct: 410 MISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGR 469

Query: 471 QGLAKEILRLQSRCGRLP 488
              A ++L      G LP
Sbjct: 470 VEWAMKLLERMQGHGCLP 487



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 180/347 (51%), Gaps = 8/347 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P+   +  + +     G+ + A+K+   M ++G   ++ S++ I++ LC    VE A+ L
Sbjct: 242 PSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFAL 301

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F ++F     A++ ++  +  G  +  +  +AL++ K M+  G  PN+  YN ++ G   
Sbjct: 302 FAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCS 361

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G +EEA +   +M++  C  +V TY+ ++ GF   G++  A   ++ M++ G  P+V T
Sbjct: 362 NGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVT 421

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y  M+ VLCK    + A  + E+M  +G  PN+ T+N  I+GLC  G +E A++ + RM+
Sbjct: 422 YTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQ 481

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK-- 432
              C PN+ TYN L+       + E    LF+++ +    PNL TYN ++   F R    
Sbjct: 482 GHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYG-FSRAGMM 540

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
            + L + GK L+    RG  P   T+N +++     G   +A +++ 
Sbjct: 541 GEALQLFGKALV----RGTAPDSITYNTMIHAYCKQGKVKIAAQLVE 583



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 137/262 (52%), Gaps = 2/262 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T++I+ + +  +G    A + +  M  HGCR ++ ++  ++D+LCK    ++A +L
Sbjct: 382 PNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSL 441

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             K+       + +++N    G C   R   A+++L+ M   G  PN+TTYN +L   FR
Sbjct: 442 VEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFR 501

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
             + EEA+  F E++ R  + ++VTY T+++GF   G +  A  +F   +  G  P   T
Sbjct: 502 MNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSIT 561

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVG-KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           YN MI   CK+  V+ A  + E +   K + P+  TY  +I G C+   +E A+ F+ + 
Sbjct: 562 YNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKA 621

Query: 374 KDDECEPNVQTYNILIRYFCDA 395
            +    PN  T+N L+R F D+
Sbjct: 622 INQGICPNFATWNALVRCFFDS 643



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 167/375 (44%), Gaps = 40/375 (10%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M    + P   +++ I      +G  + A  +F  M   GC  ++++F  ++    
Sbjct: 266 LLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCF 325

Query: 185 KEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
              K+ +A +L+K+  +   + +V++YN + +G C      +AL+V  +M   G  PN+T
Sbjct: 326 MRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVT 385

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT---------------------- 281
           TY+I++ G+ ++G +  A   +  M    C  +VVTYT                      
Sbjct: 386 TYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKM 445

Query: 282 -------------TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
                        T + G    G ++ A  + + M   G LP++ TYN ++  L + +  
Sbjct: 446 TLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKY 505

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           E A  +F+E+  +   PN  TYN V+ G    G M  AL+  G+       P+  TYN +
Sbjct: 506 EEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTM 565

Query: 389 IRYFCDAGEIERGLELFEKMGS-GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           I  +C  G+++   +L E++ S     P++ TY  LI         ++   A   L + +
Sbjct: 566 IHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEE---AMAFLDKAI 622

Query: 448 DRGFMPRKFTFNRVL 462
           ++G  P   T+N ++
Sbjct: 623 NQGICPNFATWNALV 637



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 118/240 (49%), Gaps = 2/240 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   +D+  +   +    +LV +M      P   TF    +     G+ + A+K+   M
Sbjct: 421 TYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERM 480

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
             HGC  ++ ++N +LD L +  K E+A+ LF+    +  + ++++YN +  G+      
Sbjct: 481 QGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMM 540

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK-CEIDVVTYTT 282
            +AL++  + + RG  P+  TYN ++  Y + G+++ A +    +   K    D++TYT+
Sbjct: 541 GEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTS 600

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++ G      I+ A    D  +N G+ P+ AT+NA+++           I + ++++ KG
Sbjct: 601 LIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCFFDSLGHMGPIHILDDILRKG 660



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 75/154 (48%), Gaps = 2/154 (1%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           ++++  +D   R+  Y   + L   +++ +L P   T+  +   +  AG    A+++F  
Sbjct: 490 TTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGK 549

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG--KFKADVISYNVIANGWCLVK 221
               G      ++NT++   CK+ KV+ A  L +      ++  D+I+Y  +  G C   
Sbjct: 550 ALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWM 609

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
              +A+  L + +++G+ PN  T+N +++ +F +
Sbjct: 610 NIEEAMAFLDKAINQGICPNFATWNALVRCFFDS 643


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 117/408 (28%), Positives = 194/408 (47%), Gaps = 42/408 (10%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           ++H +D       ++ +  L   MK   L P   T+ I+ +      + D A K+F+ M 
Sbjct: 147 YNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMS 206

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNK 225
             GC     ++ T++  LCK  K++ A  L     G+FK  V  YN + +G C   R   
Sbjct: 207 NKGCPPDAVTYTTMVSSLCKAGKIDDAREL----AGRFKPSVPVYNALIDGMCKEGRIEV 262

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
           A+++L EM+D G++PN+ +Y+ ++     +G +E A+  F +M  R C+ ++ T+T ++ 
Sbjct: 263 AIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIK 322

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
           G  + G++  A +++  M+  G  P+V  YN +I  LC   S+E A+ V ++M   G +P
Sbjct: 323 GCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLP 382

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY-------------------- 385
           N TTY+++I G   +G++  A E   RM    C PNV TY                    
Sbjct: 383 NVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLV 442

Query: 386 ---------------NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
                          N  I+  C  G +E  ++L E+M    CLPN+ TYN L+ ++F  
Sbjct: 443 EKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRM 502

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
            K ++   A  L  E+  R   P   T+N VL G    G  G A ++ 
Sbjct: 503 NKYEE---AFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLF 547



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/438 (26%), Positives = 196/438 (44%), Gaps = 44/438 (10%)

Query: 87  LHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAE 146
           L FF+ ++    + H+ S++   I+   R  +   V  ++ +MK   +   +  F  I  
Sbjct: 58  LGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIIN 117

Query: 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKA 205
            Y   G A++A+K+F  + E GC+ ++  +N +LD L  E K +    L+  + +     
Sbjct: 118 GYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIP 177

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           +V +YN++    C   R + A ++  EM ++G  P+  TY  ++    +AG+I++A    
Sbjct: 178 NVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELA 237

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
              K       V  Y  ++ G    G I+ A  +   M++ GV P+V +Y+ +I  LC  
Sbjct: 238 GRFKP-----SVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVS 292

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
            +VE A  +F +M  +G   N  T+  +I+G    G++  AL+    M  D CEPNV  Y
Sbjct: 293 GNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAY 352

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK---- 441
           N LI   C  G +E  L++ ++M    CLPN+ TY+ILI       KS DL+ A +    
Sbjct: 353 NTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGF---AKSGDLVGASETWNR 409

Query: 442 -------------------------------LLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
                                          L+ +M   G  P   TFN  + GL   G 
Sbjct: 410 MISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGR 469

Query: 471 QGLAKEILRLQSRCGRLP 488
              A ++L      G LP
Sbjct: 470 VEWAMKLLERMQGHGCLP 487



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 180/347 (51%), Gaps = 8/347 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P+   +  + +     G+ + A+K+   M ++G   ++ S++ I++ LC    VE A+ L
Sbjct: 242 PSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFAL 301

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F ++F     A++ ++  +  G  +  +  +AL++ K M+  G  PN+  YN ++ G   
Sbjct: 302 FAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCS 361

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G +EEA +   +M++  C  +V TY+ ++ GF   G++  A   ++ M++ G  P+V T
Sbjct: 362 NGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVT 421

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y  M+ VLCK    + A  + E+M  +G  PN+ T+N  I+GLC  G +E A++ + RM+
Sbjct: 422 YTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQ 481

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK-- 432
              C PN+ TYN L+       + E    LF+++ +    PNL TYN ++   F R    
Sbjct: 482 GHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYG-FSRAGMM 540

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
            + L + GK L+    RG  P   T+N +++     G   +A +++ 
Sbjct: 541 GEALQLFGKALV----RGTAPDSITYNTMIHAYCKQGKVKIAAQLVE 583



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 137/262 (52%), Gaps = 2/262 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T++I+ + +  +G    A + +  M  HGCR ++ ++  ++D+LCK    ++A +L
Sbjct: 382 PNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSL 441

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             K+       + I++N    G C   R   A+++L+ M   G  PN+TTYN +L   FR
Sbjct: 442 VEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFR 501

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
             + EEA+  F E++ R  + ++VTY T+++GF   G +  A  +F   +  G  P   T
Sbjct: 502 MNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSIT 561

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVG-KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           YN MI   CK+  V+ A  + E +   K + P+  TY  +I G C+   +E A+ F+ + 
Sbjct: 562 YNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKA 621

Query: 374 KDDECEPNVQTYNILIRYFCDA 395
            +    PN  T+N L+R F D+
Sbjct: 622 INQGICPNFATWNALVRCFFDS 643



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 167/375 (44%), Gaps = 40/375 (10%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M    + P   +++ I      +G  + A  +F  M   GC  ++++F  ++    
Sbjct: 266 LLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCF 325

Query: 185 KEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
              K+ +A +L+K+  +   + +V++YN + +G C      +AL+V  +M   G  PN+T
Sbjct: 326 MRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVT 385

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT---------------------- 281
           TY+I++ G+ ++G +  A   +  M    C  +VVTYT                      
Sbjct: 386 TYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKM 445

Query: 282 -------------TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
                        T + G    G ++ A  + + M   G LP++ TYN ++  L + +  
Sbjct: 446 TLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKY 505

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           E A  +F+E+  +   PN  TYN V+ G    G M  AL+  G+       P+  TYN +
Sbjct: 506 EEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTM 565

Query: 389 IRYFCDAGEIERGLELFEKMGS-GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           I  +C  G+++   +L E++ S     P++ TY  LI         ++   A   L + +
Sbjct: 566 IHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEE---AMAFLDKAI 622

Query: 448 DRGFMPRKFTFNRVL 462
           ++G  P   T+N ++
Sbjct: 623 NQGICPNFATWNALV 637



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 118/240 (49%), Gaps = 2/240 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   +D+  +   +    +LV +M      P   TF    +     G+ + A+K+   M
Sbjct: 421 TYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERM 480

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
             HGC  ++ ++N +LD L +  K E+A+ LF+    +  + ++++YN +  G+      
Sbjct: 481 QGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMM 540

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK-CEIDVVTYTT 282
            +AL++  + + RG  P+  TYN ++  Y + G+++ A +    +   K    D++TYT+
Sbjct: 541 GEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTS 600

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++ G      I+ A    D  +N G+ P+ AT+NA+++           I + ++++ KG
Sbjct: 601 LIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCFFDSLGHMGPIHILDDILRKG 660



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 75/154 (48%), Gaps = 2/154 (1%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           ++++  +D   R+  Y   + L   +++ +L P   T+  +   +  AG    A+++F  
Sbjct: 490 TTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGK 549

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG--KFKADVISYNVIANGWCLVK 221
               G      ++NT++   CK+ KV+ A  L +      ++  D+I+Y  +  G C   
Sbjct: 550 ALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWM 609

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
              +A+  L + +++G+ PN  T+N +++ +F +
Sbjct: 610 NIEEAMAFLDKAINQGICPNFATWNALVRCFFDS 643


>gi|449511317|ref|XP_004163923.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Cucumis sativus]
          Length = 495

 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 126/460 (27%), Positives = 224/460 (48%), Gaps = 30/460 (6%)

Query: 23  SPLTTTSPAPLPPAAADPAALAS--------------LILTSTDPRTLTQTLHCPSLHWT 68
           SPL   SP PL    + P + ++              +I TS+    +  +L    +  +
Sbjct: 11  SPLRYFSPIPLSIFYSHPFSSSTDNQSLHQNIETVFRIITTSSSSTDMKHSLESSRVFLS 70

Query: 69  PQLVDQIIKRL-WNHA--LKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTL 125
            +L+D ++KR+ ++H   L+AL FFN  +    + H+  S D  + +  R R +  +W +
Sbjct: 71  NELIDGVLKRVRFSHGNPLQALEFFNYTAKRRGFYHTSFSVDTMLYILGRSRKFDKIWDV 130

Query: 126 VH--RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           +   + K  SL  + +T  ++  R        + V+ F    +      +  FN +L  L
Sbjct: 131 LLDVKFKDPSL-ISLRTVMVVLGRIAKVCSVRQTVESFRKFKKFVPEFDVTCFNALLRTL 189

Query: 184 CKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           C+EK +  A N++   +  F+ ++ ++N++ +GW   K + +A     EM++ G+ P++ 
Sbjct: 190 CQEKSMMDARNVYHGLKSMFRPNLQTFNILLSGW---KSSEEAEGFFDEMIEMGVKPDVV 246

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           +YN ++  Y +  ++++A++   +M+      DV+TYT+I+ G G+VG+  +ARN+   M
Sbjct: 247 SYNCLVDVYCKNREMDKAFKVVGKMRDEDIPADVITYTSIIGGLGLVGQPDKARNILKEM 306

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G  P VA YNA I+  C    +  A  + +EMV KG  PN+TTYN+  R    + ++
Sbjct: 307 KEYGCYPDVAAYNATIRNFCIAKRLHEAFDLLDEMVNKGLSPNATTYNLFFRIFFWSNDL 366

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A     RM D  C PN Q+   L+R F    + E  LEL+  M          +Y IL
Sbjct: 367 QSAWNLYRRMMDTGCLPNTQSCLFLVRLFKKYEKEEMALELWNDM----IQKGFGSY-IL 421

Query: 424 ISSMFVRKKSD--DLLVAGKLLIEMVDRGFMPRKFTFNRV 461
           +S        D   L+ A    ++MVD+G  P   +F R+
Sbjct: 422 VSEELFDLLCDLGKLIEAESCFLQMVDKGHKPSYTSFKRI 461


>gi|449466251|ref|XP_004150840.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Cucumis sativus]
          Length = 495

 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 126/460 (27%), Positives = 224/460 (48%), Gaps = 30/460 (6%)

Query: 23  SPLTTTSPAPLPPAAADPAALAS--------------LILTSTDPRTLTQTLHCPSLHWT 68
           SPL   SP PL    + P + ++              +I TS+    +  +L    +  +
Sbjct: 11  SPLRYFSPIPLSIFFSHPFSSSTDNQSLHQNIETVFRIITTSSSSTDMKHSLESSRVFLS 70

Query: 69  PQLVDQIIKRL-WNHA--LKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTL 125
            +L+D ++KR+ ++H   L+AL FFN  +    + H+  S D  + +  R R +  +W +
Sbjct: 71  NELIDGVLKRVRFSHGNPLQALEFFNYTAKRRGFYHTSFSVDTMLYILGRSRKFDKIWDV 130

Query: 126 VH--RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           +   + K  SL  + +T  ++  R        + V+ F    +      +  FN +L  L
Sbjct: 131 LLDVKFKDPSL-ISLRTVMVVLGRIAKVCSVRQTVESFRKFKKFVPEFDVTCFNALLRTL 189

Query: 184 CKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           C+EK +  A N++   +  F+ ++ ++N++ +GW   K + +A     EM++ G+ P++ 
Sbjct: 190 CQEKSMMDARNVYHGLKSMFRPNLQTFNILLSGW---KSSEEAEGFFDEMIEMGVKPDVV 246

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           +YN ++  Y +  ++++A++   +M+      DV+TYT+I+ G G+VG+  +ARN+   M
Sbjct: 247 SYNCLVDVYCKNREMDKAFKVVGKMRDEDIPADVITYTSIIGGLGLVGQPDKARNILKEM 306

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G  P VA YNA I+  C    +  A  + +EMV KG  PN+TTYN+  R    + ++
Sbjct: 307 KEYGCYPDVAAYNATIRNFCIAKRLHEAFDLLDEMVNKGLSPNATTYNLFFRIFFWSNDL 366

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A     RM D  C PN Q+   L+R F    + E  LEL+  M          +Y IL
Sbjct: 367 QSAWNLYRRMMDTGCLPNTQSCLFLVRLFKKYEKEEMALELWNDM----IQKGFGSY-IL 421

Query: 424 ISSMFVRKKSD--DLLVAGKLLIEMVDRGFMPRKFTFNRV 461
           +S        D   L+ A    ++MVD+G  P   +F R+
Sbjct: 422 VSEELFDLLCDLGKLIEAESCFLQMVDKGHKPSYTSFKRI 461


>gi|356499705|ref|XP_003518677.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Glycine max]
          Length = 500

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 123/427 (28%), Positives = 207/427 (48%), Gaps = 25/427 (5%)

Query: 47  ILTSTD-PRTLTQTLHCPSLHWTPQLVDQIIKRL-WNHA--LKALHFFNILSYHPTYAHS 102
           IL+ST  P  L Q+L    +  +  ++DQ++KR+ ++H    + L FF        + HS
Sbjct: 40  ILSSTSTPEQLKQSLKSSGVFLSNDVIDQVLKRVRFSHGNPSQTLEFFRYTGRRKGFYHS 99

Query: 103 PSSFDHAIDLAARLRDYRTVWT-LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
             S D  + +  R R +  VW  L+   +      T +T  ++  R        + V+ F
Sbjct: 100 SFSLDTMLYILGRSRMFGQVWELLIEARRKDQTAITARTVMVVLGRIAKVCSVRQTVESF 159

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVK 221
               +       N FN +L  LC+EK +  A N++   + +F+ ++ ++N++ +GW   K
Sbjct: 160 RKFRKLVQEFDTNCFNALLRTLCQEKSMADARNVYHSLKHRFRPNLQTFNILLSGW---K 216

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
               A    KEM + G+ P++ TYN ++  Y +  +IE+A++   EM+ +    DV+TYT
Sbjct: 217 TPEDADLFFKEMKEMGVTPDVVTYNSLMDVYCKGREIEKAYKMLDEMRDQDFSPDVITYT 276

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
            I+ G G++G+  +ARNV   M   G  P  A YNA I+  C    + +A  + EEMV K
Sbjct: 277 CIIGGLGLIGQPDKARNVLKEMKEYGCYPDAAAYNAAIRNFCIAKRLGDAHGLVEEMVTK 336

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
           G  PN+TTYN+  R    + +++ +     RM  + C PN Q+   LIR F    ++E  
Sbjct: 337 GLSPNATTYNLFFRVFYWSNDLQSSWNMYQRMMVEGCLPNTQSCMFLIRLFRRHEKVEMA 396

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV-------AGKLLIEMVDRGFMPR 454
           L+ +  M          +Y ++   +F      DLL        A K  +EMV++G  P 
Sbjct: 397 LQFWGDMVE----KGFGSYTLVSDVLF------DLLCDMGKLEEAEKCFLEMVEKGQKPS 446

Query: 455 KFTFNRV 461
             +F R+
Sbjct: 447 HVSFRRI 453



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 7/143 (4%)

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           ++  +N ++R LC    M  A      +K     PN+QT+NIL+  +    + +   +  
Sbjct: 170 DTNCFNALLRTLCQEKSMADARNVYHSLKH-RFRPNLQTFNILLSGWKTPEDADLFFKEM 228

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           ++MG     P++ TYN L   M V  K  ++  A K+L EM D+ F P   T+  ++ GL
Sbjct: 229 KEMG---VTPDVVTYNSL---MDVYCKGREIEKAYKMLDEMRDQDFSPDVITYTCIIGGL 282

Query: 466 LLIGNQGLAKEILRLQSRCGRLP 488
            LIG    A+ +L+     G  P
Sbjct: 283 GLIGQPDKARNVLKEMKEYGCYP 305


>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 104/329 (31%), Positives = 181/329 (55%), Gaps = 4/329 (1%)

Query: 144 IAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK- 202
           I +++   GK   AV +F  M        + +F  ++D  CKE +V++A N+  +   + 
Sbjct: 148 IHDKHCIVGKLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQG 207

Query: 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262
            K  V++YN + +G+ LVK+ NKA  +   M   G++P++ +Y+I++ G+ +   ++EA 
Sbjct: 208 IKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAM 267

Query: 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322
               EM  ++   +VVTY++++ G    G+I  A  + D M + G  P++ TY++++  L
Sbjct: 268 ELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDAL 327

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
           CK   V+NAI +  +M  +G  PN  TY ++I+GLC +G++E A +    +       NV
Sbjct: 328 CKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNV 387

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
            TY ++I+ FCD G  +  L L  KM    C+PN  TY I+I S+F   K D+  +A KL
Sbjct: 388 YTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSLF---KKDENEMAEKL 444

Query: 443 LIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
           L EM++  F  R    N ++  + + G+ 
Sbjct: 445 LCEMIETNFDGRVALTNDLIASIWVTGSS 473



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 171/323 (52%), Gaps = 4/323 (1%)

Query: 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ 171
           +  +L+D      L ++M   ++ P   TF I+ + +   G+   A  +   M   G + 
Sbjct: 154 IVGKLKD---AVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKP 210

Query: 172 SLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVL 230
            + ++N+++D     K+V KA ++F    +     D+ SY+++ NG+C +K  ++A+E+L
Sbjct: 211 GVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELL 270

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
           KEM  + + PN+ TY+ ++ G  ++G+I  A +   EM  R    ++VTY++I+      
Sbjct: 271 KEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKN 330

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
            ++  A  +   M N G+ P++ TY  +I+ LC+   +E+A  VFE+++ KG+  N  TY
Sbjct: 331 HQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTY 390

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
            V+I+G C  G  + AL  + +M+D+ C PN +TY I+I       E E   +L  +M  
Sbjct: 391 TVMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSLFKKDENEMAEKLLCEMIE 450

Query: 411 GVCLPNLDTYNILISSMFVRKKS 433
                 +   N LI+S++V   S
Sbjct: 451 TNFDGRVALTNDLIASIWVTGSS 473



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 89/207 (42%), Gaps = 13/207 (6%)

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
           ++  A ++F+ ++     P    +N ++  L K       + + ++M  +G  PN    N
Sbjct: 42  DVDDAVSLFNRLLQQNPTPPNIEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCN 101

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI----------ERG 401
           ++I   C  G +  A   + ++     +PN  T N LI+  C  G+I          +  
Sbjct: 102 ILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDA 161

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
           ++LF KM      P++ T+ IL+       +  +   A  +L  M+ +G  P   T+N +
Sbjct: 162 VDLFNKMILENINPDVYTFTILVDGFCKEGRVKE---AKNVLAMMMIQGIKPGVVTYNSL 218

Query: 462 LNGLLLIGNQGLAKEILRLQSRCGRLP 488
           ++G  L+     AK I    ++ G  P
Sbjct: 219 MDGYFLVKQVNKAKSIFNTMAQLGVSP 245



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 7/170 (4%)

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
           + V++A+ +F  ++ +   P +  +N ++  L  +      L    +M+    +PN+   
Sbjct: 41  NDVDDAVSLFNRLLQQNPTPPNIEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNC 100

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK-SDDLLVAGK--- 441
           NILI  FC  G I     +  K+      PN  T N LI  + +  K  D   + GK   
Sbjct: 101 NILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKD 160

Query: 442 ---LLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
              L  +M+     P  +TF  +++G    G    AK +L +    G  P
Sbjct: 161 AVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKP 210


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 109/385 (28%), Positives = 199/385 (51%), Gaps = 4/385 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  I++  R   ++     +  M+   + P   T+  +   Y   GK + A KIF +M
Sbjct: 219 TFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIFKTM 278

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRT 223
            +   +    ++N+ +  LCKE+++E+A   L K+       + ++YN + +G C     
Sbjct: 279 KDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDL 338

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           +KA     EM++RG+  ++ TYN+++   F   +IEEA     EM+++  E DVVTY   
Sbjct: 339 DKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQ 398

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++G+   G  K+A ++FD MV   + P+V TY ++I V  K++ +  A   F++ + +G 
Sbjct: 399 INGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGM 458

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
           +P+   +N +I G C  G ++RA + +  M + +  P+  T+N L++ +C   ++E   +
Sbjct: 459 LPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKK 518

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           L ++M      P+  +YN LIS      K  D+  A ++  EM+  GF P   T+N ++ 
Sbjct: 519 LLDEMKERGIKPDHISYNTLISGY---SKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQ 575

Query: 464 GLLLIGNQGLAKEILRLQSRCGRLP 488
           G   IG    A+E+LR     G  P
Sbjct: 576 GYSKIGEADHAEELLREMQSKGITP 600



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 126/494 (25%), Positives = 221/494 (44%), Gaps = 52/494 (10%)

Query: 26  TTTSPAPLPPAAADPAALASLILTST-----------DPRTLTQTLHCPSLHWTPQLVDQ 74
           TTTS  P PP           I TS             P  L+ TL  P+LH  P LV+ 
Sbjct: 27  TTTSAPPSPPITE--TKFLEYIQTSQWHFIKHLAPNLTPSLLSSTL--PTLHQNPILVET 82

Query: 75  IIKRLWNH---------ALKALHFFNILSYHPTY--------AHSPSSFDHAIDLAARLR 117
           ++  L  H          +     + + S  P++          +P+   + + LA    
Sbjct: 83  LLSHLHRHPHCLDLNTRCITLCILYRLPSPKPSFHILQPILHTTTPTVIFNELSLARNRL 142

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177
           + +T  TLV              F ++   Y    K D A++    M E+       + N
Sbjct: 143 NVKT--TLV--------------FDLLLSAYCQFRKPDEALECLNLMKENEIIPKTETCN 186

Query: 178 TILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
           ++L LL K  K++ A+ +++ + +   K+ ++++N++ N  C   +  KA + +  M   
Sbjct: 187 SLLSLLLKLNKIKMAWFVYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVY 246

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           G+ PN+ TYN V+ GY   G+ E A + F  MK +  + D  TY + +        I+ A
Sbjct: 247 GVKPNVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEA 306

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
             V   ++  G++P+  TYNA+I   C K  ++ A    +EM+ +G + +  TYN++I  
Sbjct: 307 SGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHA 366

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
           L     +E A + +  M++   EP+V TYNI I  +C  G  ++ L LF++M      P 
Sbjct: 367 LFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPT 426

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKE 476
           ++TY  LI    V  K + +  A +   + +  G +P    FN +++G  + GN   A +
Sbjct: 427 VETYTSLID---VFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQ 483

Query: 477 ILRLQSRCGRLPRQ 490
           +L+       +P +
Sbjct: 484 LLKEMDNAKVVPDE 497



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 112/228 (49%), Gaps = 2/228 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  I+   R  + +   +L   M   ++ PT +T+  + + +    +   A + F   
Sbjct: 394 TYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKS 453

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRT 223
            + G    +  FN ++D  C    +++A+ L K     K   D +++N +  G+C  ++ 
Sbjct: 454 IKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKV 513

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A ++L EM +RG+ P+  +YN ++ GY + G +++A   F EM     +  ++TY  +
Sbjct: 514 EEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNAL 573

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS-VEN 330
           + G+  +GE   A  +   M + G+ P  +TY  +I+ +   D  VEN
Sbjct: 574 IQGYSKIGEADHAEELLREMQSKGITPDDSTYLYVIEAMKTNDDLVEN 621


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 105/365 (28%), Positives = 189/365 (51%), Gaps = 4/365 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+ RM      P + T+  + +    +G+   A+++   M E   +     ++ I+D LC
Sbjct: 199 LIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLC 258

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K+  ++ A+NLF     K FKAD+I Y  +  G+C   R +   ++L++M+ R + P++ 
Sbjct: 259 KDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVV 318

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            ++ ++  + + G++ EA     EM +R    D VTYT+++ GF    ++ +A ++ D M
Sbjct: 319 AFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLM 378

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           V+ G  P++ T+N +I   CK + +++ + +F +M  +G + ++ TYN +I+G C  G++
Sbjct: 379 VSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKL 438

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           E A E    M      P++ +Y IL+   CD GE E+ LE+FEK+       ++  YNI+
Sbjct: 439 EVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNII 498

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I  M    K DD   A  L   +  +G  P   T+N ++ GL   G+   A  + R    
Sbjct: 499 IHGMCNASKVDD---AWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEE 555

Query: 484 CGRLP 488
            G  P
Sbjct: 556 DGHSP 560



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 114/403 (28%), Positives = 186/403 (46%), Gaps = 34/403 (8%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F   ID   +    R    L   M    + P   T+  + + +    + D+A  +   M
Sbjct: 319 AFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLM 378

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKR 222
              GC  ++ +FN +++  CK   ++    LF+    RG   AD ++YN +  G+C + +
Sbjct: 379 VSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRG-VVADTVTYNTLIQGFCELGK 437

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
              A E+ +EMV R + P++ +Y I+L G    G+ E+A   F +++K K E+D+  Y  
Sbjct: 438 LEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNI 497

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           I+HG     ++  A ++F  +   GV P V TYN MI  LCKK S+  A L+F +M   G
Sbjct: 498 IIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDG 557

Query: 343 YMPNSTTYNVVIRGLCHTGE------------------------MERALEFVGRMKDDEC 378
           + PN  TYN++IR   H GE                        +  AL  + RM     
Sbjct: 558 HSPNGCTYNILIRA--HLGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLARMLKAGH 615

Query: 379 EPNVQTYNILIRYFC--DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
           EP+V T+  L+R FC  +   +     LF+ M +    PN+ TYN +I  +      + +
Sbjct: 616 EPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMGYKPNVVTYNTVIKGLL---NGNMI 672

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
                +L +M +RG  P   T +  ++GL      G A  +LR
Sbjct: 673 SQVPGVLDQMFERGCQPNAVTKSTFISGLCKQDLHGSAILLLR 715



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 173/365 (47%), Gaps = 24/365 (6%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M    + P    F+ + + +V  GK   A ++   M + G      ++ +++D  C
Sbjct: 304 LLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFC 363

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           KE +++KA ++  +   K    ++ ++N++ NG+C     +  LE+ ++M  RG+  +  
Sbjct: 364 KENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTV 423

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN +++G+   G++E A   F EM  R+   D+V+Y  ++ G    GE ++A  +F+ +
Sbjct: 424 TYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKI 483

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
               +   +  YN +I  +C    V++A  +F  +  KG  P+  TYN++I GLC  G +
Sbjct: 484 EKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSL 543

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE----------------- 406
             A     +M++D   PN  TYNILIR     G+  +  +L E                 
Sbjct: 544 SEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFA 603

Query: 407 -----KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
                +M      P++ T+  L+   F  +++  +  A  L   M   G+ P   T+N V
Sbjct: 604 LSTLARMLKAGHEPDVFTFTTLLRP-FCLEENASVYDAPTLFKNMKAMGYKPNVVTYNTV 662

Query: 462 LNGLL 466
           + GLL
Sbjct: 663 IKGLL 667



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 170/376 (45%), Gaps = 4/376 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
            F     + AR + Y  V  L  +M+   +     T +I+        K   A      +
Sbjct: 74  DFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKI 133

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
            + G      +F+T+++ LC E +V +A  L  ++     K  +I+ N + NG CL  + 
Sbjct: 134 IKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKV 193

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A+ ++  MV+ G  PN  TY  VLK   ++GQ   A     +M++RK ++D V Y+ I
Sbjct: 194 SDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSII 253

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G    G +  A N+F+ M   G    +  Y  +I+  C     ++   +  +M+ +  
Sbjct: 254 IDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKI 313

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+   ++ +I      G++  A E    M      P+  TY  LI  FC   ++++   
Sbjct: 314 TPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANH 373

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           + + M S  C PN+ T+NILI+        DD L   +L  +M  RG +    T+N ++ 
Sbjct: 374 MLDLMVSKGCGPNIRTFNILINGYCKANLIDDGL---ELFRKMSLRGVVADTVTYNTLIQ 430

Query: 464 GLLLIGNQGLAKEILR 479
           G   +G   +AKE+ +
Sbjct: 431 GFCELGKLEVAKELFQ 446



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 148/291 (50%), Gaps = 4/291 (1%)

Query: 188 KVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
           K + A +LF+ + R + +  +I ++ + +     K+ +  L++ K+M  +G+  NL T +
Sbjct: 52  KEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLS 111

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
           I++    R  ++  A+    ++ K   E D VT++T+++G  + G +  A  + D MV  
Sbjct: 112 IMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEM 171

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G  P++ T NA++  LC    V +A+L+ + MV  G+ PN  TY  V++ +C +G+   A
Sbjct: 172 GHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALA 231

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
           +E + +M++ + + +   Y+I+I   C  G ++    LF +M       ++  Y  LI  
Sbjct: 232 MELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRG 291

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
                + DD     KLL +M+ R   P    F+ +++  +  G    A+E+
Sbjct: 292 FCYAGRWDD---GAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEEL 339



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 138/316 (43%), Gaps = 26/316 (8%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
            L  F  +S     A +  +++  I     L        L   M S  + P   ++ I+ 
Sbjct: 406 GLELFRKMSLRGVVADT-VTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILL 464

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FK 204
           +     G+ ++A++IF  + +      +  +N I+  +C   KV+ A++LF     K  K
Sbjct: 465 DGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVK 524

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
            DV +YN++  G C     ++A  + ++M + G +PN  TYNI+++ +   G   ++ + 
Sbjct: 525 PDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKL 584

Query: 265 FLEMK----------------------KRKCEIDVVTYTTIVHGFGVV--GEIKRARNVF 300
             E+K                      K   E DV T+TT++  F +     +  A  +F
Sbjct: 585 IEEIKRCGFSVDASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLF 644

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
             M   G  P+V TYN +I+ L   + +     V ++M  +G  PN+ T +  I GLC  
Sbjct: 645 KNMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPNAVTKSTFISGLCKQ 704

Query: 361 GEMERALEFVGRMKDD 376
                A+  + +M++D
Sbjct: 705 DLHGSAILLLRKMEND 720


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/362 (31%), Positives = 183/362 (50%), Gaps = 6/362 (1%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           R  SL + P   TF+ + +     G+ D A      M   G   ++ ++N +++ LCK  
Sbjct: 215 RDGSLRVSPDTVTFSTLIDGLCKCGQTDEACND--DMIAGGYVPNVVTYNALVNGLCKAD 272

Query: 188 KVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
           K+E+A+ + +    K    DVI+Y+V+ + +C   R ++ALE+L  M  RG  PN+ T+N
Sbjct: 273 KMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFN 332

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
            ++ G  ++ +  EA++  L++  R    D VT+  ++ G    G  ++A  +F+ MV  
Sbjct: 333 SIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAK 392

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
            + P V T+ A+I  LCK   VE A  + + M   G  PN  TYNV++ GLC +G +E  
Sbjct: 393 NMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEP 452

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
            EF+  M    C P   TY  L+   C A   +  L+L  K+ S    P+  TYNIL+  
Sbjct: 453 CEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDG 512

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGR 486
           ++   K++  +    +L EMV +G  P  FTF     GL   GN     E+LR+    G 
Sbjct: 513 LWKSGKTEQAIT---VLEEMVGKGHQPDSFTFAACFGGLHRSGNLAGTMELLRVVLAKGM 569

Query: 487 LP 488
           LP
Sbjct: 570 LP 571



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 113/432 (26%), Positives = 193/432 (44%), Gaps = 43/432 (9%)

Query: 100 AHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRA 157
            H P   +++  ID   +  D      L   M S    P   T++++       G+ D A
Sbjct: 111 GHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEA 170

Query: 158 VKIFLSMHEHGCRQSLN--SFNTILDLLCKEKKVEKAYNLFKVFR--------------- 200
            ++   M    C    N  ++N+ LD LCK+    +A  L +  R               
Sbjct: 171 RELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFST 230

Query: 201 ---------------------GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
                                G +  +V++YN + NG C   +  +A  +++ MVD+G+ 
Sbjct: 231 LIDGLCKCGQTDEACNDDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVT 290

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           P++ TY++++  + +A +++EA      M  R C  +VVT+ +I+ G         A  +
Sbjct: 291 PDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQI 350

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
              + N  ++P   T+N +I   CK  + E A  +FEEMV K   P+  T+  +I GLC 
Sbjct: 351 ALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCK 410

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419
            G++E A + +  M +    PNV TYN+L+   C +G IE   E  E+M S  C+P   T
Sbjct: 411 AGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMT 470

Query: 420 YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           Y  L+ ++    ++DD L   +L+ ++   G+ P   T+N +++GL   G    A  +L 
Sbjct: 471 YGSLVYALCRASRTDDAL---QLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLE 527

Query: 480 LQSRCGRLPRQF 491
                G  P  F
Sbjct: 528 EMVGKGHQPDSF 539



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 115/397 (28%), Positives = 192/397 (48%), Gaps = 13/397 (3%)

Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLV---HRMKSLSLGPTQKTFAIIAERYVSAGKADR 156
           + S S  D+ I L +  R   T   L      M    + PT  T+  I      + +   
Sbjct: 40  SSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGA 99

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIAN 215
            +++F  + + G    + ++NT++D LCK   +E+A  L      +    +V++Y+V+ N
Sbjct: 100 GMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLIN 159

Query: 216 GWCLVKRTNKALEVLKEMVDRGLN--PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
           G C V R ++A E+++EM  +  +  PN+ TYN  L G  +     EA      ++    
Sbjct: 160 GLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSL 219

Query: 274 EI--DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
            +  D VT++T++ G    G+   A N  D M+ GG +P+V TYNA++  LCK D +E A
Sbjct: 220 RVSPDTVTFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADKMERA 277

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
             + E MV KG  P+  TY+V++   C    ++ ALE +  M    C PNV T+N +I  
Sbjct: 278 HAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDG 337

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
            C +       ++  ++ + + +P+  T+NILI+      K+ +   A  L  EMV +  
Sbjct: 338 LCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGAC---KAGNFEQASALFEEMVAKNM 394

Query: 452 MPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            P   TF  +++GL   G    A++IL L    G  P
Sbjct: 395 QPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPP 431



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 152/301 (50%), Gaps = 1/301 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++  M    + P   T++++ + +  A + D A+++   M   GC  ++ +FN+I+D LC
Sbjct: 280 MIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLC 339

Query: 185 KEKKVEKAYNL-FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  +  +A+ +  +V+      D +++N++  G C      +A  + +EMV + + P++ 
Sbjct: 340 KSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVM 399

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           T+  ++ G  +AGQ+E A      M       +VVTY  +VHG    G I+      + M
Sbjct: 400 TFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEM 459

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           V+ G +P   TY +++  LC+    ++A+ +  ++   G+ P++ TYN+++ GL  +G+ 
Sbjct: 460 VSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKT 519

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           E+A+  +  M     +P+  T+         +G +   +EL   + +   LP+  T + +
Sbjct: 520 EQAITVLEEMVGKGHQPDSFTFAACFGGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSI 579

Query: 424 I 424
           +
Sbjct: 580 L 580



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 114/235 (48%), Gaps = 10/235 (4%)

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL-EMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
           R  + ++  YNIVL+   RAG+   A   F  EM +      +VTY TI++G     E+ 
Sbjct: 39  RSSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELG 98

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
               +F+ +V  G  P V TYN +I  LCK   +E A  +   M  +G +PN  TY+V+I
Sbjct: 99  AGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLI 158

Query: 355 RGLCHTGEMERALEFVGRMKDDECE--PNVQTYNILIRYFCDAGEIERGLELFEKM--GS 410
            GLC  G ++ A E +  M    C+  PN+ TYN  +   C         EL   +  GS
Sbjct: 159 NGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGS 218

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
               P+  T++ LI  +    ++D+         +M+  G++P   T+N ++NGL
Sbjct: 219 LRVSPDTVTFSTLIDGLCKCGQTDEACND-----DMIAGGYVPNVVTYNALVNGL 268



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 105/211 (49%), Gaps = 12/211 (5%)

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG-MVNGGVLPSVATYNAMIQVL 322
           FF+    R     V  Y  ++      GE  RA  +F G M   GV P++ TYN +I  L
Sbjct: 36  FFVRSSSRS----VADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGL 91

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
           CK + +   + +FEE+V +G+ P+  TYN +I  LC  G++E A    G M    C PNV
Sbjct: 92  CKSNELGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNV 151

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVC--LPNLDTYNILISSMFVRKKSDDLLVAG 440
            TY++LI   C  G I+   EL ++M    C  LPN+ TYN  +  +  +  + +   A 
Sbjct: 152 VTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAE---AC 208

Query: 441 KLLIEMVDRGF--MPRKFTFNRVLNGLLLIG 469
           +L+  + D      P   TF+ +++GL   G
Sbjct: 209 ELMRSLRDGSLRVSPDTVTFSTLIDGLCKCG 239



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 100/217 (46%), Gaps = 1/217 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  I  A +  ++     L   M + ++ P   TF  + +    AG+ + A  I   M
Sbjct: 365 TFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLM 424

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRT 223
              G   ++ ++N ++  LCK  ++E+    L ++       + ++Y  +    C   RT
Sbjct: 425 GNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRT 484

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + AL+++ ++   G +P+  TYNI++ G +++G+ E+A     EM  +  + D  T+   
Sbjct: 485 DDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAAC 544

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
             G    G +     +   ++  G+LP   T ++++ 
Sbjct: 545 FGGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSILD 581


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 106/314 (33%), Positives = 178/314 (56%), Gaps = 12/314 (3%)

Query: 176 FNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           +N++L+ LCK KKV +A+ +F   V    F  DV+SY+++ +G+C +    +A ++ K+M
Sbjct: 449 YNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQM 508

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           +D    PN+TTYN  L G  R G+I +A   + EM    C  DV+TY+T++HGF +  + 
Sbjct: 509 IDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKH 568

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
            +A  +F+ M++ G  P+  TYN ++  LCK+   + A  +F +MV +G  P+  TY  +
Sbjct: 569 DQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTL 628

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           + G C+ G++E+A+E    M     +P+V  YN L++ F  AG+     +LF+ M S  C
Sbjct: 629 LYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQC 688

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGL 473
            P+  ++NI+I  +   K+ DD +   + + +  D G  P   T+N ++ G  L G Q L
Sbjct: 689 KPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQ--DHGCSPDLVTYNSLIFG--LCGEQRL 744

Query: 474 A------KEILRLQ 481
           +      KEI RL+
Sbjct: 745 SEAMKVFKEIDRLK 758



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 165/297 (55%), Gaps = 2/297 (0%)

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
           S  P   +++I+ + +    +  RA K++  M +  C  ++ ++N  L+ L ++ ++  A
Sbjct: 477 SFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADA 536

Query: 193 YNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
             +++ +       DVI+Y+ + +G+ L ++ ++A E+ + M+ RG  PN  TYN +L G
Sbjct: 537 QGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHG 596

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
             +  + +EA   F +M +R C+ D VTYTT+++GF  VG+I++A  VFD MV+ G  P 
Sbjct: 597 LCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPD 656

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
           V  YN +++   +      A  +F+ MV +   P++ ++N++I GL     ++ A+E   
Sbjct: 657 VVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFE 716

Query: 372 RMKDDE-CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           RM+ D  C P++ TYN LI   C    +   +++F+++      P+   +N+L+ ++
Sbjct: 717 RMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAI 773



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 135/247 (54%), Gaps = 7/247 (2%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            R+ D + V+     M +    P   T++ +   +  A K D+A ++F +M   GCR + 
Sbjct: 531 GRIADAQGVY---EEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNA 587

Query: 174 NSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLK 231
            ++N +L  LCKE K ++A+ LF+  V RG    D ++Y  +  G+C V +  +A+EV  
Sbjct: 588 VTYNCLLHGLCKESKPDEAHELFRKMVERG-CDPDRVTYTTLLYGFCNVGKIEQAVEVFD 646

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
           EMV +G +P++  YN +LKG+FRAG+  EA + F  M  R+C+ D V++  ++ G     
Sbjct: 647 EMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAK 706

Query: 292 EIKRARNVFDGM-VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
            +  A  VF+ M  + G  P + TYN++I  LC +  +  A+ VF+E+      P+   +
Sbjct: 707 RLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAF 766

Query: 351 NVVIRGL 357
           NV++  +
Sbjct: 767 NVLLEAI 773



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 167/372 (44%), Gaps = 44/372 (11%)

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADV 207
           +V   KA  A K+F +M + GC+     ++ ++   CK + +++A+ LF     + KA +
Sbjct: 244 FVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAPL 303

Query: 208 --ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
             +++    +G C   +  +A E  + M +  L+ +   Y+++++    +G+I++A    
Sbjct: 304 NNVAWTAFLSGLCKSGKIEQAFEACRTMQE-SLSSSQPVYDMLIRLLIESGRIDKAEEAC 362

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT----------- 314
           LE+  R  +    T  +++      G +  A ++ + M+  G  P +AT           
Sbjct: 363 LEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKA 422

Query: 315 --------------------------YNAMIQVLCKKDSVENAILVFEEMVG-KGYMPNS 347
                                     YN+++  LCK   V  A  +F  MV  + ++P+ 
Sbjct: 423 DKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDV 482

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
            +Y+++I G C   E+ RA +   +M D  C PNV TYN  +      G I     ++E+
Sbjct: 483 VSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEE 542

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467
           M +  C P++ TY+ LI    + +K D    A +L   M+ RG  P   T+N +L+GL  
Sbjct: 543 MVAAGCSPDVITYSTLIHGFSLARKHDQ---AHELFETMISRGCRPNAVTYNCLLHGLCK 599

Query: 468 IGNQGLAKEILR 479
                 A E+ R
Sbjct: 600 ESKPDEAHELFR 611



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 152/329 (46%), Gaps = 6/329 (1%)

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIAN 215
           A+  F  +     +  + ++N +LD L + + +++A  +F K+       +  +Y V+  
Sbjct: 113 ALTFFRWLQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLVQ 172

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
             C  + +++A+    EMVD+G  P+ T Y  V +     G+  E  R F    +++  +
Sbjct: 173 SSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVAV 232

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
           +++    ++  F +  +   A  +F  MV  G  P    Y+ M+   CK ++++ A  +F
Sbjct: 233 EMMLKKALLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLF 292

Query: 336 EEMVGKGYMP-NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
            EM  +   P N+  +   + GLC +G++E+A E    M++     +   Y++LIR   +
Sbjct: 293 LEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAFEACRTMQES-LSSSQPVYDMLIRLLIE 351

Query: 395 AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
           +G I++  E   ++      P+  T + +I  +    + D  L    LL  M+ RG+ P 
Sbjct: 352 SGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSAL---SLLETMIKRGYCPD 408

Query: 455 KFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
             T + ++N L        A+E L+   R
Sbjct: 409 MATHSMLINELCKADKIQEAQEFLQGMDR 437



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           T   VI+ L   GE   AL F   ++    + +V TYN L+       ++++  ++FEKM
Sbjct: 99  TVGAVIKHLRDGGE---ALTFFRWLQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKM 155

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
            +   +PN  TY +L+ S    + SD+   A +   EMVD+GF P    + +V   L   
Sbjct: 156 VAQGVVPNGFTYAVLVQSSCYERNSDE---AVRFFGEMVDKGFKPSSTLYQKVTECLKAT 212

Query: 469 GNQG 472
           G +G
Sbjct: 213 GKEG 216


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 116/382 (30%), Positives = 192/382 (50%), Gaps = 13/382 (3%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           I+ A +LRD          M++L L P   ++  +    +   K   A K+   M E G 
Sbjct: 329 IEEAFKLRD---------EMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGV 379

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
           + +  + N ++   CKE K++ A N + K+    F  D ++YN + NG+C      +A  
Sbjct: 380 KPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFR 439

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
            + EM  + +  +  T N +L+   R  ++EEA++     +KR   ID V+Y T++ G+ 
Sbjct: 440 TMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYF 499

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G + RA  ++D M    ++PS  TYN +I  LC+    E AI    E++  G +P+ T
Sbjct: 500 KDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDET 559

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           TYN ++ G C  G++E+A +F  +M ++  +P+V T NIL+R  C  G +E+ L+LF   
Sbjct: 560 TYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTW 619

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
            S     +  TYN LI+S+    + DD   A  LL EM ++   P  +T+N ++  L   
Sbjct: 620 VSKGKAIDTVTYNTLITSLCKEGRLDD---AFNLLSEMEEKELGPDHYTYNAIITALTDS 676

Query: 469 GNQGLAKEILRLQSRCGRLPRQ 490
           G    A+E +      G LP Q
Sbjct: 677 GRIREAEEFMSKMLEKGNLPDQ 698



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 108/376 (28%), Positives = 176/376 (46%), Gaps = 11/376 (2%)

Query: 102 SPSS--FDHAIDLAARLRDYRTVWTLVHRMKSLSLGP---TQKTFAIIAERYVSAGKADR 156
           SPS    D AI    +       + +  +MK L L P   T  T      RY S+     
Sbjct: 132 SPSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSF 191

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA--DVISYNVIA 214
           + + F    + G   ++N+FN ++   C E K + A     V  GK+    D ++YN I 
Sbjct: 192 SREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVM-GKYNCSPDNVTYNTIL 250

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
           +  C   R   A ++L +M  RGL PN  TYNI++ GY + G ++EA      M +    
Sbjct: 251 DTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLL 310

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
            DV TY  +++G    G I+ A  + D M N  +LP V +YN +I    +   +  A  +
Sbjct: 311 PDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKL 370

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
            EEM  KG  PN+ T+N++++  C  G+M+ A   + +M++    P+  TYN LI  +C 
Sbjct: 371 LEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCK 430

Query: 395 AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
           AG +       ++MG      +  T N ++ ++   KK ++   A KLL     RG+   
Sbjct: 431 AGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEE---AYKLLSSARKRGYFID 487

Query: 455 KFTFNRVLNGLLLIGN 470
           + ++  ++ G    GN
Sbjct: 488 EVSYGTLIVGYFKDGN 503



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 97/368 (26%), Positives = 160/368 (43%), Gaps = 61/368 (16%)

Query: 126 VHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185
           + +M+     P   T+  +   Y  AG    A +    M     +    + NTIL  LC+
Sbjct: 406 ITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCR 465

Query: 186 EKKVEKAYNLFKVFR----------------GKFK--------------------ADVIS 209
           EKK+E+AY L    R                G FK                       ++
Sbjct: 466 EKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVT 525

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           YN I  G C   +T +A+  L E+++ GL P+ TTYN +L GY R G +E+A++F  +M 
Sbjct: 526 YNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMV 585

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
           +   + DV T   ++ G  + G +++A  +F+  V+ G      TYN +I  LCK+  ++
Sbjct: 586 ENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLD 645

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD-----------DEC 378
           +A  +  EM  K   P+  TYN +I  L  +G +  A EF+ +M +           D+ 
Sbjct: 646 DAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGNLPDQVLQLDKN 705

Query: 379 EPNVQ------------TYNILIRYFCDAGEIERGLELF-EKMGSGVCLPNLDTYNILIS 425
           E  V              Y+  I+  C  G+ +  + +F E    G+ + +  TY  L+ 
Sbjct: 706 ETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQKGITV-DKSTYINLMD 764

Query: 426 SMFVRKKS 433
            +  R+KS
Sbjct: 765 GLIKRRKS 772



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 120/262 (45%), Gaps = 41/262 (15%)

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG---FGVVGE 292
           R  +P+    +  +  Y ++GQ   A++ F +MK+ +   +++T  T+++    +     
Sbjct: 129 RLTSPSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHS 188

Query: 293 IKRARNVFDGMVNGGVLPSV-----------------------------------ATYNA 317
           +  +R  F+  +  G++P+V                                    TYN 
Sbjct: 189 VSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNT 248

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           ++  LCKK  + +A  +  +M  +G +PN  TYN+++ G C  G ++ A   +  M  + 
Sbjct: 249 ILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNN 308

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
             P+V TYN+LI   C+ G IE   +L ++M +   LP++ +YN LI+      K  +  
Sbjct: 309 LLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISE-- 366

Query: 438 VAGKLLIEMVDRGFMPRKFTFN 459
            A KLL EM ++G  P   T N
Sbjct: 367 -AFKLLEEMSEKGVKPNAVTHN 387



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 117/275 (42%), Gaps = 33/275 (12%)

Query: 107 DHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE 166
           D  +D A +L D          MK   + P+  T+  I       GK ++A+     + E
Sbjct: 501 DGNVDRALKLWD---------EMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLE 551

Query: 167 HGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNK 225
            G      ++NTIL   C+E  VEKA+    K+    FK DV + N++  G C+     K
Sbjct: 552 SGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEK 611

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
           AL++    V +G   +  TYN ++    + G++++A+    EM++++   D  TY  I+ 
Sbjct: 612 ALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIIT 671

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPS-----------------------VATYNAMIQVL 322
                G I+ A      M+  G LP                           Y+  I+ L
Sbjct: 672 ALTDSGRIREAEEFMSKMLEKGNLPDQVLQLDKNETVVTSETSEESDSSSVAYSEWIKEL 731

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
           C +   ++A+ +F E   KG   + +TY  ++ GL
Sbjct: 732 CTEGKYKDAMRIFGESKQKGITVDKSTYINLMDGL 766



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 83/183 (45%), Gaps = 8/183 (4%)

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           PS A  +  I    +     +A  +F++M      PN  T N ++  L        ++ F
Sbjct: 133 PSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPS-SHSVSF 191

Query: 370 VGRMKDDECE----PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
                +D  +    PNV T+NI+I  +C   + +  +E    MG   C P+  TYN ++ 
Sbjct: 192 SREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILD 251

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
           ++  + +  D   A  LL++M  RG +P + T+N ++ G   +G    A  ++ L ++  
Sbjct: 252 TLCKKGRLGD---ARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNN 308

Query: 486 RLP 488
            LP
Sbjct: 309 LLP 311



 Score = 40.0 bits (92), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 6/149 (4%)

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY---FCDAGEIERG 401
           P+    +  I     +G+   A +   +MK     PN+ T N L+     +  +  +   
Sbjct: 133 PSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFS 192

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
            E F        +PN++T+NI+I    +  K  D   A + L  M      P   T+N +
Sbjct: 193 REAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKD---AVEFLNVMGKYNCSPDNVTYNTI 249

Query: 462 LNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
           L+ L   G  G A+++L      G LP +
Sbjct: 250 LDTLCKKGRLGDARDLLMDMKSRGLLPNR 278


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 116/382 (30%), Positives = 192/382 (50%), Gaps = 13/382 (3%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           I+ A +LRD          M++L L P   ++  +    +   K   A K+   M E G 
Sbjct: 329 IEEAFKLRD---------EMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGV 379

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
           + +  + N ++   CKE K++ A N + K+    F  D ++YN + NG+C      +A  
Sbjct: 380 KPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFR 439

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
            + EM  + +  +  T N +L+   R  ++EEA++     +KR   ID V+Y T++ G+ 
Sbjct: 440 TMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYF 499

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G + RA  ++D M    ++PS  TYN +I  LC+    E AI    E++  G +P+ T
Sbjct: 500 KDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDET 559

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           TYN ++ G C  G++E+A +F  +M ++  +P+V T NIL+R  C  G +E+ L+LF   
Sbjct: 560 TYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTW 619

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
            S     +  TYN LI+S+    + DD   A  LL EM ++   P  +T+N ++  L   
Sbjct: 620 VSKGKAIDTVTYNTLITSLCKEGRLDD---AFNLLSEMEEKELGPDHYTYNAIITALTDS 676

Query: 469 GNQGLAKEILRLQSRCGRLPRQ 490
           G    A+E +      G LP Q
Sbjct: 677 GRIREAEEFMSKMLEKGXLPXQ 698



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 108/376 (28%), Positives = 176/376 (46%), Gaps = 11/376 (2%)

Query: 102 SPSS--FDHAIDLAARLRDYRTVWTLVHRMKSLSLGP---TQKTFAIIAERYVSAGKADR 156
           SPS    D AI    +       + +  +MK L L P   T  T      RY S+     
Sbjct: 132 SPSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSF 191

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA--DVISYNVIA 214
           + + F    + G   ++N+FN ++   C E K + A     V  GK+    D ++YN I 
Sbjct: 192 SREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVM-GKYNCSPDNVTYNTIL 250

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
           +  C   R   A ++L +M  RGL PN  TYNI++ GY + G ++EA      M +    
Sbjct: 251 DALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLL 310

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
            DV TY  +++G    G I+ A  + D M N  +LP V +YN +I    +   +  A  +
Sbjct: 311 PDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKL 370

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
            EEM  KG  PN+ T+N++++  C  G+M+ A   + +M++    P+  TYN LI  +C 
Sbjct: 371 LEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCK 430

Query: 395 AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
           AG +       ++MG      +  T N ++ ++   KK ++   A KLL     RG+   
Sbjct: 431 AGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEE---AYKLLSSARKRGYFID 487

Query: 455 KFTFNRVLNGLLLIGN 470
           + ++  ++ G    GN
Sbjct: 488 EVSYGTLIVGYFKDGN 503



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/368 (26%), Positives = 159/368 (43%), Gaps = 61/368 (16%)

Query: 126 VHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185
           + +M+     P   T+  +   Y  AG    A +    M     +    + NTIL  LC+
Sbjct: 406 ITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCR 465

Query: 186 EKKVEKAYNLFKVFR----------------GKFK--------------------ADVIS 209
           EKK+E+AY L    R                G FK                       ++
Sbjct: 466 EKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVT 525

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           YN I  G C   +T +A+  L E+++ GL P+ TTYN +L GY R G +E+A++F  +M 
Sbjct: 526 YNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMV 585

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
           +   + DV T   ++ G  + G +++A  +F+  V+ G      TYN +I  LCK+  ++
Sbjct: 586 ENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLD 645

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD-----------DEC 378
           +A  +  EM  K   P+  TYN +I  L  +G +  A EF+ +M +           D  
Sbjct: 646 DAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGXLPXQVLQLDXN 705

Query: 379 EPNVQ------------TYNILIRYFCDAGEIERGLELF-EKMGSGVCLPNLDTYNILIS 425
           E  V              Y+  I+  C  G+ +  + +F E    G+ + +  TY  L+ 
Sbjct: 706 ETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQKGITV-DKSTYINLMD 764

Query: 426 SMFVRKKS 433
            +  R+KS
Sbjct: 765 GLIKRRKS 772



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 120/262 (45%), Gaps = 41/262 (15%)

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG---FGVVGE 292
           R  +P+    +  +  Y ++GQ   A++ F +MK+ +   +++T  T+++    +     
Sbjct: 129 RLTSPSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHS 188

Query: 293 IKRARNVFDGMVNGGVLPSV-----------------------------------ATYNA 317
           +  +R  F+  +  G++P+V                                    TYN 
Sbjct: 189 VSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNT 248

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           ++  LCKK  + +A  +  +M  +G +PN  TYN+++ G C  G ++ A   +  M  + 
Sbjct: 249 ILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNN 308

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
             P+V TYN+LI   C+ G IE   +L ++M +   LP++ +YN LI+      K  +  
Sbjct: 309 LLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISE-- 366

Query: 438 VAGKLLIEMVDRGFMPRKFTFN 459
            A KLL EM ++G  P   T N
Sbjct: 367 -AFKLLEEMSEKGVKPNAVTHN 387



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 117/275 (42%), Gaps = 33/275 (12%)

Query: 107 DHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE 166
           D  +D A +L D          MK   + P+  T+  I       GK ++A+     + E
Sbjct: 501 DGNVDRALKLWD---------EMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLE 551

Query: 167 HGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNK 225
            G      ++NTIL   C+E  VEKA+    K+    FK DV + N++  G C+     K
Sbjct: 552 SGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEK 611

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
           AL++    V +G   +  TYN ++    + G++++A+    EM++++   D  TY  I+ 
Sbjct: 612 ALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIIT 671

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPS-----------------------VATYNAMIQVL 322
                G I+ A      M+  G LP                           Y+  I+ L
Sbjct: 672 ALTDSGRIREAEEFMSKMLEKGXLPXQVLQLDXNETVVTSETSEESDSSSVAYSEWIKEL 731

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
           C +   ++A+ +F E   KG   + +TY  ++ GL
Sbjct: 732 CTEGKYKDAMRIFGESKQKGITVDKSTYINLMDGL 766



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 83/183 (45%), Gaps = 8/183 (4%)

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           PS A  +  I    +     +A  +F++M      PN  T N ++  L        ++ F
Sbjct: 133 PSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPS-SHSVSF 191

Query: 370 VGRMKDDECE----PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
                +D  +    PNV T+NI+I  +C   + +  +E    MG   C P+  TYN ++ 
Sbjct: 192 SREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILD 251

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
           ++  + +  D   A  LL++M  RG +P + T+N ++ G   +G    A  ++ L ++  
Sbjct: 252 ALCKKGRLGD---ARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNN 308

Query: 486 RLP 488
            LP
Sbjct: 309 LLP 311



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 6/149 (4%)

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY---FCDAGEIERG 401
           P+    +  I     +G+   A +   +MK     PN+ T N L+     +  +  +   
Sbjct: 133 PSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFS 192

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
            E F        +PN++T+NI+I    +  K  D   A + L  M      P   T+N +
Sbjct: 193 REAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKD---AVEFLNVMGKYNCSPDNVTYNTI 249

Query: 462 LNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
           L+ L   G  G A+++L      G LP +
Sbjct: 250 LDALCKKGRLGDARDLLMDMKSRGLLPNR 278


>gi|356560073|ref|XP_003548320.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Glycine max]
          Length = 466

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 125/417 (29%), Positives = 212/417 (50%), Gaps = 24/417 (5%)

Query: 68  TPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAA----RLRDYRTVW 123
           TP LV  ++ RL      AL FF    +   Y+H P +++  +D+ +    +++ +R V 
Sbjct: 23  TP-LVTGVLHRLRYDEKIALRFFTWAGHQEDYSHEPCAYNDMMDILSSTRYKVKQFRIVC 81

Query: 124 TLVHRMK--SLSLGPTQKTFAII---AERYVS-AGKADRAVKIFLSMHEHGCRQSLNSFN 177
            ++  MK  + +  P +    I+    E+Y++   K  R  +I +       +  +N+FN
Sbjct: 82  DVLEYMKRNNKTTVPVEVLLVILRKYTEKYLTHVQKFARKRRIRVKT-----QPEINAFN 136

Query: 178 TILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
            +LD LCK   VE A  L+K  R   K +  +YN+   GWC V+   + +++L+EMV+ G
Sbjct: 137 LLLDALCKCCLVEDAETLYKKMRKTVKPNAETYNIFVFGWCRVRNPTRGMKLLEEMVELG 196

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID---VVTYTTIVHGFGVVGEIK 294
             P+   YN  +  Y +AG + EA   F  M+ +   I      TY  I+        ++
Sbjct: 197 HRPDNFAYNTAIDTYCKAGMVTEAVDLFEFMRTKGSSISSPTAKTYAIIIVALAQHDRME 256

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
               +   M++ G LP V TY  +I+ +C    ++ A    EEM  K Y P+  TYN  +
Sbjct: 257 ECFKLIGHMISSGCLPDVTTYKEIIEGMCVCGKIDEAYKFLEEMGNKSYRPDIVTYNCFL 316

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
           + LC   + E AL+  GRM +  C P+VQTYN+LI  F +  + +   E +++M +  C 
Sbjct: 317 KVLCDNKKSEDALKLYGRMIELNCIPSVQTYNMLISMFFEIDDPDGAFETWQEMDNRGCR 376

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF-MPRKFTFNRVLNGLLLIGN 470
           P++DTY+++I  +F   K +D   A  LL E++++G  +P K  F+  L  L +IG+
Sbjct: 377 PDIDTYSVMIDGLFNCNKVED---ACFLLEEVINKGIKLPYK-KFDSFLMQLSVIGD 429



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 101/222 (45%), Gaps = 3/222 (1%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYR--TVWTLVHRMKSLSLGPTQKTFA 142
           +A+  F  +    +   SP++  +AI + A  +  R    + L+  M S    P   T+ 
Sbjct: 219 EAVDLFEFMRTKGSSISSPTAKTYAIIIVALAQHDRMEECFKLIGHMISSGCLPDVTTYK 278

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRG 201
            I E     GK D A K    M     R  + ++N  L +LC  KK E A  L+ ++   
Sbjct: 279 EIIEGMCVCGKIDEAYKFLEEMGNKSYRPDIVTYNCFLKVLCDNKKSEDALKLYGRMIEL 338

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
                V +YN++ + +  +   + A E  +EM +RG  P++ TY++++ G F   ++E+A
Sbjct: 339 NCIPSVQTYNMLISMFFEIDDPDGAFETWQEMDNRGCRPDIDTYSVMIDGLFNCNKVEDA 398

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
                E+  +  ++    + + +    V+G+++    V + M
Sbjct: 399 CFLLEEVINKGIKLPYKKFDSFLMQLSVIGDLQAIHRVSEHM 440


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 116/411 (28%), Positives = 200/411 (48%), Gaps = 15/411 (3%)

Query: 82  HALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTF 141
           HAL      N    HP    + +   H +  A RLRD      ++  M S    P   T 
Sbjct: 133 HALGVYRQMN--DAHPPDFLTYTKLVHGLSKAGRLRD---AVQVLQEMVSARHVPDNTTL 187

Query: 142 AIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF--KVF 199
            ++ +      + D A ++   M   G   +  +++ ++D LCK +++++A  L   +V 
Sbjct: 188 TVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVT 247

Query: 200 RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
           R  F  D+++Y+ + +G C   R   A+++ +EM      P   TYN ++ GY RAG ++
Sbjct: 248 RRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM---SCAPTAITYNSLIGGYCRAGDMD 304

Query: 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319
           EA R   +M    C  DV+TYTT++  F  +G +  A  +F  MV   + P V T+ +++
Sbjct: 305 EAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLV 364

Query: 320 QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
             LC +  +E+A+ + EE+  +G  P   TYN V+ G C + ++ +A E V   +     
Sbjct: 365 DGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFV 424

Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGS--GVCLPNLDTYNILISSMFVRKKSDDLL 437
           PN  TYNIL+   C AG  ++ L+  +++ S  G C  ++  Y I++ ++    ++DD  
Sbjct: 425 PNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDD-- 482

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            A +   EM+ RG++P   TF  V+  L        A E+L    + G  P
Sbjct: 483 -AVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTP 532



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 150/299 (50%), Gaps = 9/299 (3%)

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
           A RLRD   ++      + +S  PT  T+  +   Y  AG  D A+++   M +  C   
Sbjct: 268 AGRLRDAVDIF------EEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPD 321

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLK 231
           + ++ T++   CK  +++ AY LF+ +   K   DV+++  + +G C   R   ALE+L+
Sbjct: 322 VITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLE 381

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
           E+  RG  P + TYN V+ GY ++ Q+ +A     + + R    + VTY  +V G    G
Sbjct: 382 EITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAG 441

Query: 292 EIKRARNVFDGM-VNGGVLP-SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
              +A    D +   GG  P SVA Y  ++  LC+    ++A+  +EEM+ +GY+P + T
Sbjct: 442 RTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAAT 501

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           +  V+  LC   + ++A E +  M      P   T + ++  +C AG I++  EL  ++
Sbjct: 502 FATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASEL 560



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 169/385 (43%), Gaps = 38/385 (9%)

Query: 138 QKTFAIIAERYVSAGKADRAVKIFLS-MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF 196
             TFA++     ++ K      + L  + + G        NTIL  LC  +    A  LF
Sbjct: 10  SSTFAVVLRGLHASAKLRHLGPLLLDEIRDRGLSPDPVELNTILAELCDARDTTTAMALF 69

Query: 197 KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256
                    +  +Y  + +  C  +  ++A+ +L +M  RG+NP    +N+V+ G  RAG
Sbjct: 70  DKMAELGAVNHTTYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAG 129

Query: 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
           ++  A   + +M       D +TYT +VHG    G ++ A  V   MV+   +P   T  
Sbjct: 130 RLRHALGVYRQMNDAH-PPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLT 188

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV------ 370
            ++Q LC  D V++A  + EEM+ +G   N+ TY+ ++ GLC    ++ A+  +      
Sbjct: 189 VVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTR 248

Query: 371 --------------------GRMKDD-------ECEPNVQTYNILIRYFCDAGEIERGLE 403
                               GR++D         C P   TYN LI  +C AG+++  + 
Sbjct: 249 RGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAPTAITYNSLIGGYCRAGDMDEAIR 308

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           L  KM    C P++ TY  L+S+     + DD   A +L  +MV     P   TF  +++
Sbjct: 309 LLGKMVDDNCAPDVITYTTLMSAFCKMGRLDD---AYELFQQMVANKLSPDVVTFTSLVD 365

Query: 464 GLLLIGNQGLAKEILRLQSRCGRLP 488
           GL   G    A E+L   +R G  P
Sbjct: 366 GLCGEGRMEDALELLEEITRRGCPP 390



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 114/234 (48%), Gaps = 6/234 (2%)

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL-EMKKRKCEIDVVTYTTIVHGFGVVG 291
           M+D G   + +T+ +VL+G   + ++       L E++ R    D V   TI+       
Sbjct: 1   MLDAGYPSDSSTFAVVLRGLHASAKLRHLGPLLLDEIRDRGLSPDPVELNTILAELCDAR 60

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
           +   A  +FD M   G +     YN +I  LCK   ++ A+ +  +M  +G  P +  +N
Sbjct: 61  DTTTAMALFDKMAELGAVNHTTYYN-LIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHN 119

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
           VVI GLC  G +  AL  V R  +D   P+  TY  L+     AG +   +++ ++M S 
Sbjct: 120 VVIGGLCRAGRLRHALG-VYRQMNDAHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSA 178

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
             +P+  T  +++ S+ +  + DD   A +L+ EM+ RG      T++ +++GL
Sbjct: 179 RHVPDNTTLTVVVQSLCLGDRVDD---ARELVEEMLHRGMAANAITYSALVDGL 229


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 105/365 (28%), Positives = 189/365 (51%), Gaps = 4/365 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+ RM      P + T+  + +    +G+   A+++   M E   +     ++ I+D LC
Sbjct: 199 LIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLC 258

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K+  ++ A+NLF     K FKAD+I Y  +  G+C   R +   ++L++M+ R + P++ 
Sbjct: 259 KDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVV 318

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            ++ ++  + + G++ EA     EM +R    D VTYT+++ GF    ++ +A ++ D M
Sbjct: 319 AFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLM 378

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           V+ G  P++ T+N +I   CK + +++ + +F +M  +G + ++ TYN +I+G C  G++
Sbjct: 379 VSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKL 438

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           E A E    M      P++ +Y IL+   CD GE E+ LE+FEK+       ++  YNI+
Sbjct: 439 EVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNII 498

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I  M    K DD   A  L   +  +G  P   T+N ++ GL   G+   A  + R    
Sbjct: 499 IHGMCNASKVDD---AWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEE 555

Query: 484 CGRLP 488
            G  P
Sbjct: 556 DGHSP 560



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 161/320 (50%), Gaps = 6/320 (1%)

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKA 205
           +  AG+ D   K+   M +      + +F+ ++D   KE K+ +A  L K  + RG    
Sbjct: 292 FCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRG-ISP 350

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           D ++Y  + +G+C   + +KA  +L  MV +G  PN+ T+NI++ GY +A  I++    F
Sbjct: 351 DTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELF 410

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
            +M  R    D VTY T++ GF  +G+++ A+ +F  MV+  V P + +Y  ++  LC  
Sbjct: 411 RKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDN 470

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
              E A+ +FE++       +   YN++I G+C+  +++ A +    +     +P+V+TY
Sbjct: 471 GEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTY 530

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           NI+I   C  G +     LF KM      PN  TYNILI +        D   + KL+ E
Sbjct: 531 NIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHL---GEGDATKSAKLIEE 587

Query: 446 MVDRGFMPRKFTFNRVLNGL 465
           +   GF     T   V++ L
Sbjct: 588 IKRCGFSVDASTVKMVVDML 607



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 143/293 (48%), Gaps = 3/293 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F   ID   +    R    L   M    + P   T+  + + +    + D+A  +   M
Sbjct: 319 AFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLM 378

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKR 222
              GC  ++ +FN +++  CK   ++    LF+    RG   AD ++YN +  G+C + +
Sbjct: 379 VSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVV-ADTVTYNTLIQGFCELGK 437

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
              A E+ +EMV R + P++ +Y I+L G    G+ E+A   F +++K K E+D+  Y  
Sbjct: 438 LEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNI 497

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           I+HG     ++  A ++F  +   GV P V TYN MI  LCKK S+  A L+F +M   G
Sbjct: 498 IIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDG 557

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
           + PN  TYN++IR     G+  ++ + +  +K      +  T  +++    D 
Sbjct: 558 HSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVKMVVDMLSDG 610



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 147/285 (51%), Gaps = 1/285 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M    + P    F+ + + +V  GK   A ++   M + G      ++ +++D  C
Sbjct: 304 LLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFC 363

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           KE +++KA ++  +   K    ++ ++N++ NG+C     +  LE+ ++M  RG+  +  
Sbjct: 364 KENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTV 423

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN +++G+   G++E A   F EM  R+   D+V+Y  ++ G    GE ++A  +F+ +
Sbjct: 424 TYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKI 483

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
               +   +  YN +I  +C    V++A  +F  +  KG  P+  TYN++I GLC  G +
Sbjct: 484 EKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSL 543

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
             A     +M++D   PN  TYNILIR     G+  +  +L E++
Sbjct: 544 SEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEI 588



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 170/376 (45%), Gaps = 4/376 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
            F     + AR + Y  V  L  +M+   +     T +I+        K   A      +
Sbjct: 74  DFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKI 133

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
            + G      +F+T+++ LC E +V +A  L  ++     K  +I+ N + NG CL  + 
Sbjct: 134 IKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKV 193

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A+ ++  MV+ G  PN  TY  VLK   ++GQ   A     +M++RK ++D V Y+ I
Sbjct: 194 SDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSII 253

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G    G +  A N+F+ M   G    +  Y  +I+  C     ++   +  +M+ +  
Sbjct: 254 IDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKI 313

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+   ++ +I      G++  A E    M      P+  TY  LI  FC   ++++   
Sbjct: 314 TPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANH 373

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           + + M S  C PN+ T+NILI+        DD L   +L  +M  RG +    T+N ++ 
Sbjct: 374 MLDLMVSKGCGPNIRTFNILINGYCKANLIDDGL---ELFRKMSLRGVVADTVTYNTLIQ 430

Query: 464 GLLLIGNQGLAKEILR 479
           G   +G   +AKE+ +
Sbjct: 431 GFCELGKLEVAKELFQ 446



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 148/291 (50%), Gaps = 4/291 (1%)

Query: 188 KVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
           K + A +LF+ + R + +  +I ++ + +     K+ +  L++ K+M  +G+  NL T +
Sbjct: 52  KEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLS 111

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
           I++    R  ++  A+    ++ K   E D VT++T+++G  + G +  A  + D MV  
Sbjct: 112 IMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEM 171

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G  P++ T NA++  LC    V +A+L+ + MV  G+ PN  TY  V++ +C +G+   A
Sbjct: 172 GHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALA 231

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
           +E + +M++ + + +   Y+I+I   C  G ++    LF +M       ++  Y  LI  
Sbjct: 232 MELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRG 291

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
                + DD     KLL +M+ R   P    F+ +++  +  G    A+E+
Sbjct: 292 FCYAGRWDD---GAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEEL 339


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 186/365 (50%), Gaps = 4/365 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+ +M      P   T+  +      +G+   A+++   M E   +     ++ I+D LC
Sbjct: 215 LIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLC 274

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K   ++ A+NLF     K    ++I+YN++  G+C   R +   ++L++M+ R +NPN+ 
Sbjct: 275 KHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVV 334

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           T+++++  + + G++ EA     EM  R    D +TYT+++ GF     + +A  + D M
Sbjct: 335 TFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLM 394

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           V+ G  P++ T+N +I   CK + +++ + +F +M  +G + ++ TYN +I+G C  G++
Sbjct: 395 VSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKL 454

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             A E    M   +  PN+ TY IL+   CD GE E+ LE+FEK+       ++  YNI+
Sbjct: 455 NVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNII 514

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I  M    K DD   A  L   +  +G  P   T+N ++ GL   G    A+ + R    
Sbjct: 515 IHGMCNASKVDD---AWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEE 571

Query: 484 CGRLP 488
            G  P
Sbjct: 572 DGHAP 576



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/381 (27%), Positives = 185/381 (48%), Gaps = 4/381 (1%)

Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           AH+  +    I+   R R     ++ + ++  L   P   TF+ +       G+   A++
Sbjct: 120 AHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALE 179

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWC 218
           +   M E G +  L + NT+++ LC   K  +A  L  K+     + + ++Y  + N  C
Sbjct: 180 LVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMC 239

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
              +T  A+E+L++M +R +  +   Y+I++ G  + G ++ A+  F EM+ +    +++
Sbjct: 240 KSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNII 299

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TY  ++ GF   G       +   M+   + P+V T++ +I    K+  +  A  + +EM
Sbjct: 300 TYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEM 359

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
           + +G  P++ TY  +I G C    +++A + V  M    C+PN++T+NILI  +C A  I
Sbjct: 360 IHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRI 419

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           + GLELF KM     + +  TYN LI       K   L VA +L  EMV R   P   T+
Sbjct: 420 DDGLELFRKMSLRGVVADTVTYNTLIQGFCELGK---LNVAKELFQEMVSRKVPPNIVTY 476

Query: 459 NRVLNGLLLIGNQGLAKEILR 479
             +L+GL   G    A EI  
Sbjct: 477 KILLDGLCDNGESEKALEIFE 497



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 174/345 (50%), Gaps = 6/345 (1%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           + L + M+   +     T+ I+   + +AG+ D   K+   M +     ++ +F+ ++D 
Sbjct: 283 FNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDS 342

Query: 183 LCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
             KE K+ +A  L K  + RG    D I+Y  + +G+C     +KA +++  MV +G +P
Sbjct: 343 FVKEGKLREAEELHKEMIHRG-IAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDP 401

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           N+ T+NI++ GY +A +I++    F +M  R    D VTY T++ GF  +G++  A+ +F
Sbjct: 402 NIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELF 461

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
             MV+  V P++ TY  ++  LC     E A+ +FE++       +   YN++I G+C+ 
Sbjct: 462 QEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNA 521

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
            +++ A +    +     +P V+TYNI+I   C  G +     LF KM      P+  TY
Sbjct: 522 SKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTY 581

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           NILI +        D   + KL+ E+   GF     T   V++ L
Sbjct: 582 NILIRAHL---GDGDATKSVKLIEELKRCGFSVDASTIKMVIDML 623



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 151/318 (47%), Gaps = 7/318 (2%)

Query: 80  WNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQK 139
           W+   K L        +P       +F   ID   +    R    L   M    + P   
Sbjct: 314 WDDGAKLLRDMIKRKINPNVV----TFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTI 369

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-- 197
           T+  + + +      D+A ++   M   GC  ++ +FN +++  CK  +++    LF+  
Sbjct: 370 TYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKM 429

Query: 198 VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
             RG   AD ++YN +  G+C + + N A E+ +EMV R + PN+ TY I+L G    G+
Sbjct: 430 SLRGVV-ADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGE 488

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
            E+A   F +++K K E+D+  Y  I+HG     ++  A ++F  +   GV P V TYN 
Sbjct: 489 SEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNI 548

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           MI  LCKK  +  A L+F +M   G+ P+  TYN++IR     G+  ++++ +  +K   
Sbjct: 549 MIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCG 608

Query: 378 CEPNVQTYNILIRYFCDA 395
              +  T  ++I    D 
Sbjct: 609 FSVDASTIKMVIDMLSDG 626



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 145/291 (49%), Gaps = 4/291 (1%)

Query: 188 KVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
           K + A +LF+ +   +    VI ++ + +     K+ +  L + K+M  +G+  NL T +
Sbjct: 68  KADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLS 127

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
           I++  + R  ++  A+    ++ K   E + +T++T+++G  + G +  A  + D MV  
Sbjct: 128 IMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEM 187

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G  P + T N ++  LC       A+L+ ++MV  G  PN+ TY  V+  +C +G+   A
Sbjct: 188 GHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALA 247

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
           +E + +M++   + +   Y+I+I   C  G ++    LF +M       N+ TYNILI  
Sbjct: 248 MELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGG 307

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
                + DD     KLL +M+ R   P   TF+ +++  +  G    A+E+
Sbjct: 308 FCNAGRWDD---GAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEEL 355


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 110/376 (29%), Positives = 185/376 (49%), Gaps = 40/376 (10%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-V 198
           T++ I +  V   K + + K+   M   GC   + +FN ++    +   +EKA  +++ +
Sbjct: 12  TYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHM 71

Query: 199 FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK-------- 250
               +K D +SY+++ +G   + + +++L++L EMV RG  P++  Y+ +++        
Sbjct: 72  VESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRV 131

Query: 251 ---------------------------GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
                                      G  +AG++++A   F +M K  C+ +V  Y  +
Sbjct: 132 DHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVL 191

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +HG    G++++A  +F  M +    P V TYN ++  +CK   VE    +FE M   GY
Sbjct: 192 LHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGY 251

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
           +PN  T++ +I GLC TGE+E+ALE  G M +  C+PN  TY  LI   C A ++ +  E
Sbjct: 252 VPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARE 311

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV-DRGFMPRKFTFNRVL 462
           LFEKM      P+   YN LI+    R   D+   A KL  EM    G  P   TFN ++
Sbjct: 312 LFEKMTQACIPPDAVAYNSLIAGYCKRGSMDE---AEKLYREMSGGAGLQPTIVTFNTLI 368

Query: 463 NGLLLIGNQGLAKEIL 478
           +G   +G  G A E++
Sbjct: 369 DGFCKLGKLGRANELV 384



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 119/453 (26%), Positives = 196/453 (43%), Gaps = 43/453 (9%)

Query: 75  IIKRLWNHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSL 132
           IIK L   A K    + +L        +P   +F+  +   AR  +      +   M   
Sbjct: 16  IIKSLVKEA-KPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVES 74

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
              P   ++ I+       GK D ++KI   M   G   S+ ++++++  L K ++V+ A
Sbjct: 75  GYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRVDHA 134

Query: 193 YNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
            +LF ++ RG    D + +  +  G C   +   A E  K+M   G  PN+  YN++L G
Sbjct: 135 SSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHG 194

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTY------------------------------- 280
              +GQ+E+A   F EMK   C  DVVTY                               
Sbjct: 195 LCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPN 254

Query: 281 ----TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE 336
               +T++HG    GE+++A  VF  M+  G  P+  TY  +I  LC+ + V  A  +FE
Sbjct: 255 VITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFE 314

Query: 337 EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE-CEPNVQTYNILIRYFCDA 395
           +M      P++  YN +I G C  G M+ A +    M      +P + T+N LI  FC  
Sbjct: 315 KMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKL 374

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
           G++ R  EL  +MG+     +  TY ILI+ +    K D+ L   ++  +M ++ F+   
Sbjct: 375 GKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEAL---EVYKQMREKKFLLDP 431

Query: 456 FTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            +    + GL   GN   A  +     + G +P
Sbjct: 432 VSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVP 464



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 155/287 (54%), Gaps = 3/287 (1%)

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
           A+V +Y+ I        +  ++ +VL+EM+  G NP++  +N V++G+ R+  +E+A   
Sbjct: 8   ANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREV 67

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
           +  M +   + D V+Y  ++HG   +G++  +  +   MV  G  PS+  Y+++++ L K
Sbjct: 68  YQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAK 127

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
              V++A  +F+EM+  G+ P+   +  +I GLC  G+++ A E   +M    C+PNV  
Sbjct: 128 ARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPV 187

Query: 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLI 444
           YN+L+   C +G++E+   LF +M S  C P++ TYN L+ ++   ++ ++     KL  
Sbjct: 188 YNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEE---GCKLFE 244

Query: 445 EMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
            M   G++P   TF+ +++GL   G    A E+       G  P ++
Sbjct: 245 AMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKY 291



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 151/302 (50%), Gaps = 2/302 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P    + ++     S+G+ ++A  +F  M  H C   + ++NT+LD +CK ++VE+   L
Sbjct: 183 PNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKL 242

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F+  R   +  +VI+++ + +G C      KALEV   M++ G  PN  TY  ++ G  R
Sbjct: 243 FEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCR 302

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG-GVLPSVA 313
           A ++ +A   F +M +     D V Y +++ G+   G +  A  ++  M  G G+ P++ 
Sbjct: 303 AEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIV 362

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           T+N +I   CK   +  A  +  EM  KG   +S TY ++I GL    +++ ALE   +M
Sbjct: 363 TFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQM 422

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
           ++ +   +  +    +   C  G I++   +FE       +PN +T+ IL  S+    + 
Sbjct: 423 REKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRV 482

Query: 434 DD 435
           +D
Sbjct: 483 ED 484



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 130/273 (47%), Gaps = 4/273 (1%)

Query: 98  TYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKAD 155
           +++ SP   +++  +D   + R       L   M++    P   TF+ +       G+ +
Sbjct: 213 SHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELE 272

Query: 156 RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIA 214
           +A+++F SM E GC+ +  ++ T++  LC+ +KV +A  LF K+ +     D ++YN + 
Sbjct: 273 KALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLI 332

Query: 215 NGWCLVKRTNKALEVLKEMV-DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
            G+C     ++A ++ +EM    GL P + T+N ++ G+ + G++  A     EM  +  
Sbjct: 333 AGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGL 392

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
             D  TY  ++ G     ++  A  V+  M     L    +  + +  LCK  +++ A  
Sbjct: 393 AADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYA 452

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           VFE     G +PN  T+ ++   L   G +E A
Sbjct: 453 VFEATRKSGAVPNPETFRILSESLIKLGRVEDA 485


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 114/382 (29%), Positives = 183/382 (47%), Gaps = 4/382 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  +    R    RT   ++  M S  + P + TF  + + +V  G  + A+++   M
Sbjct: 183 TFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARM 242

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV-FRGKFKADVISYNVIANGWCLVKRT 223
            E GC  +  + N +++  CK  +VE A    +      F+ D I+YN   NG C     
Sbjct: 243 LEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHV 302

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
             AL+V+  MV  G +P++ TYNIV+    + GQ+EEA     +M  R C  D+ T+ T+
Sbjct: 303 GHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTL 362

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +        ++ A ++   +   GV P V T+N +I  LCK      A+ +FEEM   G 
Sbjct: 363 IAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGC 422

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+  TYN +I  LC  G++ +AL+ +  M+   C  +  TYN +I   C    IE   E
Sbjct: 423 TPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEE 482

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           +F++M       N  T+N LI  +   KK DD   A +L+ +M+  G  P   T+N +L 
Sbjct: 483 VFDQMDLQGISRNAITFNTLIDGLCKDKKIDD---AFELINQMISEGLQPNNITYNSILT 539

Query: 464 GLLLIGNQGLAKEILRLQSRCG 485
                G+   A +IL   +  G
Sbjct: 540 HYCKQGDIKKAADILETMTANG 561



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/407 (26%), Positives = 191/407 (46%), Gaps = 7/407 (1%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           AL   N       +A  P  ++  I     +     +  LV  M+               
Sbjct: 57  ALRMLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFL 116

Query: 146 ERYVSAGKADRAVKIFLSMHE--HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK- 202
           + Y      D AV + L+  +   G +     +N +L++L +  K++   +++     + 
Sbjct: 117 DSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARG 176

Query: 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262
            K DV+++N +    C   +   A+ +L+EM  RG+ P+ TT+  +++G+   G IE A 
Sbjct: 177 IKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAAL 236

Query: 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322
           R    M +  C    VT   +++G+  +G ++ A       +  G  P   TYN  +  L
Sbjct: 237 RVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGL 296

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
           C+ D V +A+ V + MV +G+ P+  TYN+V+  LC  G++E A   + +M D  C P++
Sbjct: 297 CQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDI 356

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
            T+N LI   C    +E  L+L  ++      P++ T+NILI+++    K  D  +A +L
Sbjct: 357 TTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALC---KVGDPHLALRL 413

Query: 443 LIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPR 489
             EM + G  P + T+N +++ L  +G  G A ++L+     G  PR
Sbjct: 414 FEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG-CPR 459



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 170/341 (49%), Gaps = 3/341 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  I+   ++ D      L   MK+    P + T+  + +   S GK  +A+ +   M
Sbjct: 393 TFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDM 452

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
              GC +S  ++NTI+D LCK+ ++E+A  +F     +    + I++N + +G C  K+ 
Sbjct: 453 ESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKI 512

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A E++ +M+  GL PN  TYN +L  Y + G I++A      M     E+DVVTY T+
Sbjct: 513 DDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTL 572

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++G    G  + A  V  GM   G+ P+   YN ++Q L +++++ +A+ +F EM   G 
Sbjct: 573 INGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGE 632

Query: 344 MPNSTTYNVVIRGLCH-TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
            P++ TY +V RGLC   G ++ A +F+  M D    P   ++ +L     + G  +  +
Sbjct: 633 PPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFI 692

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
              E +   V L   D   I    + +RK  D L   G+ L
Sbjct: 693 RAIEIIMEKVDLRESDVSAIR-GYLKIRKFYDALATFGRFL 732



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 167/368 (45%), Gaps = 34/368 (9%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+ I+       G+ + A  I   M + GC   + +FNT++  LC   ++E+A +L
Sbjct: 319 PDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDL 378

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            +    K    DV ++N++ N  C V   + AL + +EM + G  P+  TYN ++     
Sbjct: 379 ARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCS 438

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G++ +A     +M+   C    +TY TI+ G      I+ A  VFD M   G+  +  T
Sbjct: 439 LGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAIT 498

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           +N +I  LCK   +++A  +  +M+ +G  PN+ TYN ++   C  G++++A + +  M 
Sbjct: 499 FNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMT 558

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
            +  E +V TY  LI   C AG  +  L++   M      P    YN ++ S+F R    
Sbjct: 559 ANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIR 618

Query: 435 DLLV---------------------------------AGKLLIEMVDRGFMPRKFTFNRV 461
           D L                                  A   ++EMVD+GF+P   +F  +
Sbjct: 619 DALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRML 678

Query: 462 LNGLLLIG 469
             GLL +G
Sbjct: 679 AEGLLNLG 686



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 121/448 (27%), Positives = 191/448 (42%), Gaps = 27/448 (6%)

Query: 34  PPAAADPAALASLILTSTDP----RTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHF 89
           P  AA    L + +    DP    R L   L        P++ ++II++L   A+ AL  
Sbjct: 35  PLRAAGQEQLLTALREQPDPDAALRMLNAALARDDFAPGPEVYEEIIRKLG--AVGALDL 92

Query: 90  FNILSYHPTYAHSPSSFDHAIDLAA--RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
             +L              H + L       D      L      L L   Q  F I A+ 
Sbjct: 93  MKVL------VAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADT 146

Query: 148 YV---------SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV 198
            V            K      ++  M   G +  + +FNT++  LC+  +V  A  + + 
Sbjct: 147 VVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEE 206

Query: 199 FRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
              +  A D  ++  +  G+        AL V   M++ G +    T N+++ GY + G+
Sbjct: 207 MSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGR 266

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           +E+A  +  +      E D +TY T V+G      +  A  V D MV  G  P V TYN 
Sbjct: 267 VEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNI 326

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           ++  LCK   +E A  +  +MV +G +P+ TT+N +I  LC    +E AL+   ++    
Sbjct: 327 VVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKG 386

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
             P+V T+NILI   C  G+    L LFE+M +  C P+  TYN LI ++    K   L 
Sbjct: 387 VSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGK---LG 443

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            A  LL +M   G      T+N +++GL
Sbjct: 444 KALDLLKDMESTGCPRSTITYNTIIDGL 471



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 93/218 (42%), Gaps = 38/218 (17%)

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
           + D V Y  +++      ++K   +V+  M   G+ P V T+N +++ LC+   V  A++
Sbjct: 143 QADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVI 202

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           + EEM  +G  P+ TT+  +++G    G +E AL    RM +  C     T N+LI  +C
Sbjct: 203 MLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYC 262

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
             G +E  L                                     G +  E+ D GF P
Sbjct: 263 KLGRVEDAL-------------------------------------GYIQQEIAD-GFEP 284

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
            + T+N  +NGL    + G A +++ +  + G  P  F
Sbjct: 285 DQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVF 322


>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
          Length = 530

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 119/407 (29%), Positives = 203/407 (49%), Gaps = 13/407 (3%)

Query: 80  WNHALKALHFFN-ILSYHPTYAHSPSSFDHAIDLA--ARLRDYRTVWTLVHRMKSLSLGP 136
           +N    AL  FN +L  HP     PS+ D    L   A+++ Y TV +L  +M S  + P
Sbjct: 90  FNTLDDALSSFNRMLHMHP----PPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPP 145

Query: 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF 196
              T  I+   +    +   A  +   + + GC+    +FNT++  LC E K+ +A +LF
Sbjct: 146 DVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLF 205

Query: 197 -KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
            K     F+ DV++Y  + NG C V  T+ A+ +L+ MV +   PN+  YN ++    + 
Sbjct: 206 DKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKD 265

Query: 256 GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
            Q+ EA+  F EM  +    D+ TY +++H    + E K    + + MVN  ++P+V  +
Sbjct: 266 RQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVF 325

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           + ++  LCK+  +  A  V + M+ +G  P+  TY  ++ G C   EM+ A++    M  
Sbjct: 326 STVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVH 385

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
             C PNV++YNILI  +C    +++ + L E+M     + +  TYN LI  +    +   
Sbjct: 386 KGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGR--- 442

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           L  A  L  EMV  G +P   T+  +L+   L  N  LA+ ++ L++
Sbjct: 443 LQHAIALFHEMVASGQIPDLVTYRILLD--YLCKNHHLAEAMVLLKA 487



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 159/317 (50%), Gaps = 4/317 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+  +       G    A+++  SM +  CR ++ ++NTI+D LCK+++V +A+NL
Sbjct: 215 PDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNL 274

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F     K    D+ +YN + +  C +        +L EMV+  + PN+  ++ V+    +
Sbjct: 275 FSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCK 334

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G I  A      M KR  E DVVTYT ++ G  +  E+  A  VFD MV+ G +P+V +
Sbjct: 335 EGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRS 394

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN +I   C+   ++ A+ + E+M  +G + ++ TYN +I GLCH G ++ A+     M 
Sbjct: 395 YNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMV 454

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
                P++ TY IL+ Y C    +   + L + +       ++  YNI I  M    ++ 
Sbjct: 455 ASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMC---RAG 511

Query: 435 DLLVAGKLLIEMVDRGF 451
           +L  A  L   +  +GF
Sbjct: 512 ELEAARDLFSNLSCQGF 528



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 116/265 (43%), Gaps = 3/265 (1%)

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + AL     M+     P+   +  +L    +            +M       DV T   +
Sbjct: 94  DDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNIL 153

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++ F  +  +  A +V   ++  G  P   T+N +I+ LC +  +  A+ +F++ +G+G+
Sbjct: 154 INSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGF 213

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+  TY  ++ GLC  G    A+  +  M    C PNV  YN +I   C   ++     
Sbjct: 214 QPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFN 273

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           LF +M +    P++ TYN LI ++    +   +     LL EMV+   MP    F+ V++
Sbjct: 274 LFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTT---LLNEMVNSKIMPNVVVFSTVVD 330

Query: 464 GLLLIGNQGLAKEILRLQSRCGRLP 488
            L   G   +A +++ +  + G  P
Sbjct: 331 ALCKEGMIAIAHDVVDMMIKRGVEP 355



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 5/161 (3%)

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
           +++++A+  F  M+     P++  +  ++  +         L    +M      P+V T 
Sbjct: 91  NTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTL 150

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           NILI  FC    +     +  K+    C P+  T+N LI  + V  K  + L    L  +
Sbjct: 151 NILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEAL---HLFDK 207

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR--LQSRC 484
            +  GF P   T+  ++NGL  +GN   A  +LR  +Q  C
Sbjct: 208 TIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNC 248



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/134 (21%), Positives = 55/134 (41%), Gaps = 1/134 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S++  I+   +++       L+ +M    L     T+  +       G+   A+ +F  M
Sbjct: 394 SYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEM 453

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
              G    L ++  +LD LCK   + +A  L K   G    AD++ YN+  +G C     
Sbjct: 454 VASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGEL 513

Query: 224 NKALEVLKEMVDRG 237
             A ++   +  +G
Sbjct: 514 EAARDLFSNLSCQG 527


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 109/366 (29%), Positives = 182/366 (49%), Gaps = 8/366 (2%)

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186
           H M++  + P   ++ I+ +    AGK + A K+F  M + G   S  ++N ++  +C  
Sbjct: 174 HEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLA 233

Query: 187 KKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
             +++A  LFK  R K  +    ++N++ +  C   + ++A  +LK M D G  P++ TY
Sbjct: 234 YTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTY 293

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           + ++ G     ++++A     +M KR+C+  VVT  T++HG    G IK AR V D MV+
Sbjct: 294 STLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVS 353

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G  P V TYN ++   C+    E A  +  +MV +G  PN  TY  ++ GLC    +  
Sbjct: 354 SGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPE 413

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           A     +MK   C PN+ TY  LI  FC AG+++ GL+LF +M      P+   Y  L +
Sbjct: 414 ACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAA 473

Query: 426 SMFVRKKSD---DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
            +    +S    ++L  G+  +     G    +F     ++GLL  G   +A   +R   
Sbjct: 474 ELCKSGRSARALEILREGRESLRSEAWGDEVYRFA----VDGLLDAGKMEMALGFVRDMV 529

Query: 483 RCGRLP 488
           R G+LP
Sbjct: 530 RGGQLP 535



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 112/384 (29%), Positives = 189/384 (49%), Gaps = 14/384 (3%)

Query: 102 SPSSFDHAIDL-----AARLRDYRTVWT-LVHRMKSLSLGPTQKTFAIIAERYVSAGKAD 155
           SP S+ + I +     A +L D R ++  L+H      + P+   +  +      A   D
Sbjct: 7   SPDSWSYGILIDGLAKAGKLNDARDLFQKLLHS----GVTPSTVAYTSLIHGLCMANSFD 62

Query: 156 RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIA 214
            A ++F  M+  GC  S  ++N I+D  CK   +E+A +L K +       DV++YN + 
Sbjct: 63  DARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVM 122

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
           +G C   R  +AL +  EM   G  PN  ++N ++ G  +  +I++A + F EM+ R   
Sbjct: 123 DGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIP 182

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
            D  +Y  ++ G    G++  A  +F  M++ G+ PS  TYN +I  +C   +++ A+ +
Sbjct: 183 PDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALEL 242

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
           F+ M  KG  P+  T+N++I   C  G+M+ A   + RM DD   P+V TY+ LI   C 
Sbjct: 243 FKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCS 302

Query: 395 AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
              ++    L E M    C P + T N LI  +    K+  +  A ++L  MV  G  P 
Sbjct: 303 IARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLC---KAGRIKEAREVLDAMVSSGQSPD 359

Query: 455 KFTFNRVLNGLLLIGNQGLAKEIL 478
             T+N +++G    G    A+E+L
Sbjct: 360 VVTYNTLVHGHCRAGQTERARELL 383



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/361 (29%), Positives = 178/361 (49%), Gaps = 4/361 (1%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M   ++ P   ++ I+ +    AGK + A  +F  +   G   S  ++ +++  LC    
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 189 VEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
            + A  LF  + R       ++YNVI +  C      +A +++K+M++ G  P++ TYN 
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           V+ G  ++G++EEA   F EM++  C  +  ++ TI+ G     +I +A  VF  M    
Sbjct: 121 VMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARD 180

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           + P   +Y  +I  L K   +  A  +F  M+  G  P++ TYNVVI G+C    ++ AL
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEAL 240

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           E    M+   C P+  T+NILI   C  G+++    L ++M     +P++ TY+ LIS +
Sbjct: 241 ELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGL 300

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
               + DD   A  LL +MV R   P   T N +++GL   G    A+E+L      G+ 
Sbjct: 301 CSIARVDD---ARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQS 357

Query: 488 P 488
           P
Sbjct: 358 P 358



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 133/259 (51%), Gaps = 3/259 (1%)

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M +R ++P+  +Y I++ G  +AG++ +A   F ++         V YT+++HG  +   
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
              AR +F  M   G  PS  TYN +I   CK+  +E A  + ++M+  G++P+  TYN 
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           V+ GLC +G +E AL     M+   C PN +++N +I   C   +I++  ++F +M +  
Sbjct: 121 VMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARD 180

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
             P+  +Y ILI  +    K+  L  A KL   M+D G  P   T+N V++G+ L     
Sbjct: 181 IPPDSWSYGILIDGL---AKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLD 237

Query: 473 LAKEILRLQSRCGRLPRQF 491
            A E+ +     G  P +F
Sbjct: 238 EALELFKSMRSKGCRPSRF 256



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 126/296 (42%), Gaps = 38/296 (12%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  ID   +       + L+ RM      P   T++ +     S  + D A  +   M
Sbjct: 257 TFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDM 316

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRT 223
            +  C+ ++ + NT++  LCK  ++++A  +        ++ DV++YN + +G C   +T
Sbjct: 317 VKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQT 376

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A E+L +MV RGL PN+ TY  ++ G  +A ++ EA   F +MK   C  ++ TYT +
Sbjct: 377 ERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTAL 436

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE------ 337
           + GF   G++     +F  MV  G+ P    Y  +   LCK      A+ +  E      
Sbjct: 437 ILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLR 496

Query: 338 -------------------------------MVGKGYMPNSTTYNVVIRGLCHTGE 362
                                          MV  G +P       ++ GLC +G+
Sbjct: 497 SEAWGDEVYRFAVDGLLDAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQ 552



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 86/222 (38%), Gaps = 18/222 (8%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M +  L P   T+  +      A +   A  +F  M   GC  +L ++  ++   C
Sbjct: 382 LLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFC 441

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD--RGLNPN 241
              +V+    LF ++       D + Y  +A   C   R+ +ALE+L+E  +  R     
Sbjct: 442 SAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWG 501

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
              Y   + G   AG++E A  F  +M +           ++V G    G+   AR V +
Sbjct: 502 DEVYRFAVDGLLDAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLE 561

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
            +++         Y    +          A    EEMVGKGY
Sbjct: 562 EIMD-------LAYGGKAR--------GKAAKFVEEMVGKGY 588


>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 112/358 (31%), Positives = 194/358 (54%), Gaps = 10/358 (2%)

Query: 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK 197
           Q ++A +       G    A+K+   +     + ++  ++TI+D LCK + V +AY LF 
Sbjct: 164 QVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFS 223

Query: 198 VFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256
               K   ADV++Y+ +  G+C+  +  +A+ +L EMV + +NPN+ TYNI++    + G
Sbjct: 224 EMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEG 283

Query: 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
           +++EA      M K   + DV+TY+T++ G+ +V E+K+A++VF+ M   GV P V TY 
Sbjct: 284 KVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYT 343

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
            +I   CK   V+ A+ +F+EM  K  +P   TY+ +I GLC +G +    + +  M+D 
Sbjct: 344 ILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDR 403

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
               +V TY+ LI   C  G ++R + LF KM      PN+ T+ IL+  +    K   L
Sbjct: 404 GQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLC---KGGRL 460

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC---GRLPRQF 491
             A ++  +++ +G+    +T+N ++NG      QGL +E L + S+    G +P  F
Sbjct: 461 KDAQEVFQDLLTKGYHLNVYTYNVMINGHC---KQGLLEEALTMLSKMEDNGCIPNAF 515



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 184/368 (50%), Gaps = 6/368 (1%)

Query: 101 HSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           H+P    F+  +D  A+++ Y T  +L HR++   + P   T  I+   +   G+     
Sbjct: 55  HTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGF 114

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGW 217
            +   + + G      + NT++  LC + +V+KA +   K+    F+ + +SY  + NG 
Sbjct: 115 SVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGV 174

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           C +  T  A+++L+++  R   PN+  Y+ ++    +   + EA+  F EM  +    DV
Sbjct: 175 CKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADV 234

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           VTY+T+++GF + G++K A  + + MV   + P+V TYN ++  LCK+  V+ A  V   
Sbjct: 235 VTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAV 294

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M+     P+  TY+ ++ G     E+++A      M      P+V TY ILI  FC    
Sbjct: 295 MLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKM 354

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           ++  L LF++M     +P + TY+ LI  +    KS  +     L+ EM DRG      T
Sbjct: 355 VDEALNLFKEMHQKNMVPGIVTYSSLIDGLC---KSGRIPYVWDLIDEMRDRGQPADVIT 411

Query: 458 FNRVLNGL 465
           ++ +++GL
Sbjct: 412 YSSLIDGL 419



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 152/287 (52%), Gaps = 5/287 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD--- 181
           L++ M   ++ P   T+ I+ +     GK   A  +   M +   +  + +++T++D   
Sbjct: 256 LLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYF 315

Query: 182 LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           L+ + KK +  +N   +       DV +Y ++ NG+C  K  ++AL + KEM  + + P 
Sbjct: 316 LVYEVKKAQHVFNAMSLM--GVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPG 373

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           + TY+ ++ G  ++G+I   W    EM+ R    DV+TY++++ G    G + RA  +F+
Sbjct: 374 IVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFN 433

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M +  + P++ T+  ++  LCK   +++A  VF++++ KGY  N  TYNV+I G C  G
Sbjct: 434 KMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQG 493

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            +E AL  + +M+D+ C PN  T+  +I       E ++  +L  +M
Sbjct: 494 LLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQM 540



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 114/217 (52%), Gaps = 1/217 (0%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M  + + P   T+ I+   +      D A+ +F  MH+      + ++++++D LCK  +
Sbjct: 330 MSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGR 389

Query: 189 VEKAYNLFKVFRGKFK-ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           +   ++L    R + + ADVI+Y+ + +G C     ++A+ +  +M D+ + PN+ T+ I
Sbjct: 390 IPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTI 449

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           +L G  + G++++A   F ++  +   ++V TY  +++G    G ++ A  +   M + G
Sbjct: 450 LLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNG 509

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            +P+  T+  +I  L KKD  + A  +  +M+ +G +
Sbjct: 510 CIPNAFTFETIIIALFKKDENDKAEKLLRQMIARGLL 546



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 119/259 (45%), Gaps = 3/259 (1%)

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
           ++  + A+     M+     P +  +N +L  + +      A      ++ +  + D++T
Sbjct: 37  IQNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLIT 96

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
              +++ F  +G+I    +V   ++  G  P   T N +I+ LC K  V+ A+   ++++
Sbjct: 97  LNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLL 156

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            +G+  N  +Y  +I G+C  G+   A++ + ++     +PNV+ Y+ +I   C    + 
Sbjct: 157 AQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVS 216

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
               LF +M       ++ TY+ LI    +  K   L  A  LL EMV +   P  +T+N
Sbjct: 217 EAYGLFSEMTVKGISADVVTYSTLIYGFCIEGK---LKEAIGLLNEMVLKTINPNVYTYN 273

Query: 460 RVLNGLLLIGNQGLAKEIL 478
            +++ L   G    AK +L
Sbjct: 274 ILVDALCKEGKVKEAKSVL 292


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 121/429 (28%), Positives = 200/429 (46%), Gaps = 45/429 (10%)

Query: 90  FNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149
             +L    +   +P +F H   + A          + H ++S+   P   T+  +   + 
Sbjct: 132 LELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDH-LRSMGCDPNVVTYTALIAAFA 190

Query: 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVI 208
            A K + A+K+   M E GC  +L ++N ++D LCK   V  A ++ K +  G F  +V+
Sbjct: 191 RAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVM 250

Query: 209 SYNVIANGWCLVKRTN-------------------------------------KALEVLK 231
           ++N + +G+C  KR N                                     +A EVL+
Sbjct: 251 TFNSLVDGFC--KRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLE 308

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
           EM  RG+ P+  TY+ ++ G  +A +IEEA +    M    C  DVV Y++I+H F   G
Sbjct: 309 EMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSG 368

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG-YMPNSTTY 350
           ++  A+     M      P V TYN +I  LCK   +  A ++ E+M   G  +P+  TY
Sbjct: 369 KLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTY 428

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           + VI GLC +  +  A + + RM    C P+V TY  +I   C  G +E    L + M  
Sbjct: 429 STVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKR 488

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
             C PN+ TY  LIS +   +K D+   A +++ EM + G  P   T+N ++NGL + G 
Sbjct: 489 AGCAPNVVTYTTLISGLCKARKVDE---AERVMEEMRNAGCPPNLVTYNTMVNGLCVSGR 545

Query: 471 QGLAKEILR 479
              A+++++
Sbjct: 546 IKEAQQLVQ 554



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 114/387 (29%), Positives = 191/387 (49%), Gaps = 15/387 (3%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           S F +A DL A L        L+  MKS    P   T   I     +AG  D A+    S
Sbjct: 120 SGFCNAGDLHAALE-------LLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRS 172

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKR 222
           M   GC  ++ ++  ++    + KK+E+A  L +  R +    ++++YNV+ +  C +  
Sbjct: 173 M---GCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSM 229

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
              A +V+K+M++ G  PN+ T+N ++ G+ + G +++A +    M  +    +VVTY+ 
Sbjct: 230 VGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSA 289

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++ G     +   A+ V + M   GV P   TY+A+I  LCK D +E A  +   M G G
Sbjct: 290 LIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSG 349

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
             P+   Y+ +I   C +G++  A + +  M+     P+V TYN +I   C  G+I    
Sbjct: 350 CTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQ 409

Query: 403 ELFEKMG-SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
            + E+M  SG  LP++ TY+ +I+ +    KSD L+ A KLL  M   G  P   T+  +
Sbjct: 410 VILEQMQESGDVLPDVVTYSTVINGLC---KSDMLVEAQKLLDRMCKAGCNPDVVTYTTI 466

Query: 462 LNGLLLIGNQGLAKEILRLQSRCGRLP 488
           ++GL   G    A+ +L+   R G  P
Sbjct: 467 IDGLCKCGRLEEAEYLLQGMKRAGCAP 493



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 184/366 (50%), Gaps = 7/366 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  +D   +L        +V +M      P   TF  + + +   G  D A K+   M
Sbjct: 216 TYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIM 275

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
              G R ++ +++ ++D LCK +K  +A  + +  + +    D  +Y+ + +G C   + 
Sbjct: 276 VAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKI 335

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A ++L+ M   G  P++  Y+ ++  + ++G++ EA +   EM+K++   DVVTY T+
Sbjct: 336 EEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTV 395

Query: 284 VHGFGVVGEIKRARNVFDGMV-NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           + G   +G+I  A+ + + M  +G VLP V TY+ +I  LCK D +  A  + + M   G
Sbjct: 396 IDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAG 455

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
             P+  TY  +I GLC  G +E A   +  MK   C PNV TY  LI   C A +++   
Sbjct: 456 CNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAE 515

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD--RGFMPRKFTFNR 460
            + E+M +  C PNL TYN +++ + V  +  +   A +L+  M D      P   T+  
Sbjct: 516 RVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKE---AQQLVQRMKDGRAECSPDAATYRT 572

Query: 461 VLNGLL 466
           ++N L+
Sbjct: 573 IVNALM 578



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 171/353 (48%), Gaps = 9/353 (2%)

Query: 63  PSLHWTPQLVDQIIKRL-WNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRT 121
           P++     LVD   KR   + A K L         P       ++   ID   + + +  
Sbjct: 247 PNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVV----TYSALIDGLCKSQKFLE 302

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
              ++  MK+  + P   T++ +      A K + A ++   M   GC   +  +++I+ 
Sbjct: 303 AKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIH 362

Query: 182 LLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRG-LN 239
             CK  K+ +A    +  R + K+ DV++YN + +G C + +  +A  +L++M + G + 
Sbjct: 363 AFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVL 422

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           P++ TY+ V+ G  ++  + EA +    M K  C  DVVTYTTI+ G    G ++ A  +
Sbjct: 423 PDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYL 482

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
             GM   G  P+V TY  +I  LCK   V+ A  V EEM   G  PN  TYN ++ GLC 
Sbjct: 483 LQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCV 542

Query: 360 TGEMERALEFVGRMKDD--ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           +G ++ A + V RMKD   EC P+  TY  ++     +  ++   +L E+M S
Sbjct: 543 SGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQMKS 595



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 137/286 (47%), Gaps = 6/286 (2%)

Query: 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262
           F     S+N +       K+  +A ++ +  +     P++ +YNIV+ G+  AG +  A 
Sbjct: 73  FSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAAL 132

Query: 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322
               EMK      D  T+T I+      G++  A    D + + G  P+V TY A+I   
Sbjct: 133 ELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGA---MDHLRSMGCDPNVVTYTALIAAF 189

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
            +   +E A+ + EEM  +G  PN  TYNV++  LC    +  A + V +M +    PNV
Sbjct: 190 ARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNV 249

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
            T+N L+  FC  G ++   +L   M +    PN+ TY+ LI  +    KS   L A ++
Sbjct: 250 MTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLC---KSQKFLEAKEV 306

Query: 443 LIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           L EM  RG  P  FT++ +++GL        A+++LR  +  G  P
Sbjct: 307 LEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTP 352


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 109/366 (29%), Positives = 182/366 (49%), Gaps = 8/366 (2%)

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186
           H M++  + P   ++ I+ +    AGK + A K+F  M + G   S  ++N ++  +C  
Sbjct: 174 HEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLA 233

Query: 187 KKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
             +++A  LFK  R K  +    ++N++ +  C   + ++A  +LK M D G  P++ TY
Sbjct: 234 YTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTY 293

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           + ++ G     ++++A     +M KR+C+  VVT  T++HG    G IK AR V D MV+
Sbjct: 294 STLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVS 353

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G  P V TYN ++   C+    E A  +  +MV +G  PN  TY  ++ GLC    +  
Sbjct: 354 SGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPE 413

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           A     +MK   C PN+ TY  LI  FC AG+++ GL+LF +M      P+   Y  L +
Sbjct: 414 ACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAA 473

Query: 426 SMFVRKKSD---DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
            +    +S    ++L  G+  +     G    +F     ++GLL  G   +A   +R   
Sbjct: 474 ELCKSGRSARALEILREGRESLRSEAWGDEVYRFA----VDGLLEAGKMEMALGFVRDMV 529

Query: 483 RCGRLP 488
           R G+LP
Sbjct: 530 RGGQLP 535



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 109/384 (28%), Positives = 189/384 (49%), Gaps = 14/384 (3%)

Query: 102 SPSSFDHAIDL-----AARLRDYRTVWT-LVHRMKSLSLGPTQKTFAIIAERYVSAGKAD 155
           SP S+ + I +     A +L D R ++  L+H      + P+   +  +      A   D
Sbjct: 7   SPDSWSYGILIDGLAKAGKLNDARNLFQKLLHS----GVTPSTVAYTSLIHGLCMANSFD 62

Query: 156 RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIA 214
            A ++F  M+  GC  S  ++N ++D  CK   +E+A +L K +       DV++YN + 
Sbjct: 63  DARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVM 122

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
           +G C   R  +AL +  EM   G  PN  ++N ++ G  +  +I++A + F EM+ +   
Sbjct: 123 DGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIP 182

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
            D  +Y  ++ G    G++  A  +F  M++ G+ PS  TYN +I  +C   +++ A+ +
Sbjct: 183 PDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALEL 242

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
           F+ M  KG  P+  T+N++I   C  G+++ A   + RM DD   P+V TY+ LI   C 
Sbjct: 243 FKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCS 302

Query: 395 AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
              ++    L E M    C P + T N LI  +    K+  +  A ++L  MV  G  P 
Sbjct: 303 IARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLC---KAGRIKEAREVLDAMVSSGQSPD 359

Query: 455 KFTFNRVLNGLLLIGNQGLAKEIL 478
             T+N +++G    G    A+E+L
Sbjct: 360 VVTYNTLVHGHCRAGQTERARELL 383



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/361 (28%), Positives = 178/361 (49%), Gaps = 4/361 (1%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M   ++ P   ++ I+ +    AGK + A  +F  +   G   S  ++ +++  LC    
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 189 VEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
            + A  LF  + R       ++YNV+ +  C      +A +++K+M++ G  P++ TYN 
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           V+ G  ++ ++EEA   F EM++  C  +  ++ TI+ G     +I +A  VF  M    
Sbjct: 121 VMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKD 180

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           + P   +Y  +I  L K   +  A  +F+ M+  G  P++ TYNVVI G+C    ++ AL
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEAL 240

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           E    M+   C P+  T+NILI   C  G+++    L ++M     +P++ TY+ LIS +
Sbjct: 241 ELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGL 300

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
               + DD   A  LL +MV R   P   T N +++GL   G    A+E+L      G+ 
Sbjct: 301 CSIARVDD---ARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQS 357

Query: 488 P 488
           P
Sbjct: 358 P 358



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 132/259 (50%), Gaps = 3/259 (1%)

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M +R ++P+  +Y I++ G  +AG++ +A   F ++         V YT+++HG  +   
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
              AR +F  M   G  PS  TYN MI   CK+  +E A  + ++M+  G++P+  TYN 
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           V+ GLC +  +E AL     M+   C PN +++N +I   C   +I++  ++F +M +  
Sbjct: 121 VMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKD 180

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
             P+  +Y ILI  +    K+  L  A KL   M+D G  P   T+N V++G+ L     
Sbjct: 181 IPPDSWSYGILIDGL---AKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLD 237

Query: 473 LAKEILRLQSRCGRLPRQF 491
            A E+ +     G  P +F
Sbjct: 238 EALELFKSMRSKGCRPSRF 256



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 126/296 (42%), Gaps = 38/296 (12%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  ID   +       + L+ RM      P   T++ +     S  + D A  +   M
Sbjct: 257 TFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDM 316

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRT 223
            +  C+ ++ + NT++  LCK  ++++A  +        ++ DV++YN + +G C   +T
Sbjct: 317 VKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQT 376

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A E+L +MV RGL PN+ TY  ++ G  +A ++ EA   F +MK   C  ++ TYT +
Sbjct: 377 ERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTAL 436

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE------ 337
           + GF   G++     +F  MV  G+ P    Y  +   LCK      A+ +  E      
Sbjct: 437 ILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLR 496

Query: 338 -------------------------------MVGKGYMPNSTTYNVVIRGLCHTGE 362
                                          MV  G +P       ++ GLC +G+
Sbjct: 497 SEAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQ 552


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 120/433 (27%), Positives = 205/433 (47%), Gaps = 15/433 (3%)

Query: 63  PSLHWTPQLVDQIIK--RLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYR 120
           P++     ++D + K  R+ N    AL  ++ ++ H  +  +  ++   ID   R  +  
Sbjct: 63  PTVVTYNTMIDGLCKCGRIEN----ALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVD 118

Query: 121 TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180
               L+  M      P   T+  +    +  G++  A  +   M  +GC   L +F  I+
Sbjct: 119 KGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLII 178

Query: 181 DLLCKEKKVEKAY----NLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
             LCKE ++E A+     +F +  G    DVI++N + +G C  +R   A  V K  ++R
Sbjct: 179 KGLCKEGEIEAAFRVVDEMFMIESG-LSPDVITFNSVLDGLCKEQRILDAHNVFKRALER 237

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           G  PN+ TY+ ++ G  +  +++EA +   +M +  C  + VTY+T+V G   VG ++ A
Sbjct: 238 GCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDA 297

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
             V   M + G LP   TYN +I    K+  +  A+ +  EM+  G+ P+  TY  +  G
Sbjct: 298 VVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHG 357

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG-SGVCLP 415
           LC +G  + A+E +  M    C PN  TY+ ++   C AG +   L  FEKM    V  P
Sbjct: 358 LCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAP 417

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
           ++  Y+ LI  +    K D+   A + L  M+  G +P   TF+ ++NGL   G      
Sbjct: 418 HVIAYSALIDGLCKAGKIDE---AYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGL 474

Query: 476 EILRLQSRCGRLP 488
           E+ R  +  G +P
Sbjct: 475 ELFRGMAERGCVP 487



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 111/383 (28%), Positives = 187/383 (48%), Gaps = 7/383 (1%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID   + R      TL  +M   ++ P   T+  + +      +   A  +F      GC
Sbjct: 2   IDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGC 61

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKAL 227
             ++ ++NT++D LCK  ++E A  L+        F+  V++Y+ + +G C     +K  
Sbjct: 62  HPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGC 121

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
           ++L+EM  RG  PN  TYN ++      G+ +EA+    +M    C  +++T+  I+ G 
Sbjct: 122 KLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGL 181

Query: 288 GVVGEIKRARNVFDG--MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
              GEI+ A  V D   M+  G+ P V T+N+++  LCK+  + +A  VF+  + +G  P
Sbjct: 182 CKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRP 241

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           N  TY+ +I GL    +M+ AL+ + +M +  C  N  TY+ ++      G +E  + + 
Sbjct: 242 NVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVL 301

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            +M    CLP+  TYN LI   F R++   L  A  LL EM++ GF P   T+  + +GL
Sbjct: 302 RQMRDAGCLPDAVTYNTLIDGFFKRQR---LREAVGLLREMLEAGFHPSVVTYTTLCHGL 358

Query: 466 LLIGNQGLAKEILRLQSRCGRLP 488
              G    A EIL   +  G  P
Sbjct: 359 CRSGRFDEAVEILDYMAARGCAP 381



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 155/302 (51%), Gaps = 2/302 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T++ + +      K D A+++   M E GCR +  +++T++D L K  ++E A  +
Sbjct: 241 PNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVV 300

Query: 196 FKVFR-GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            +  R      D ++YN + +G+   +R  +A+ +L+EM++ G +P++ TY  +  G  R
Sbjct: 301 LRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCR 360

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL-PSVA 313
           +G+ +EA      M  R C  + +TY++IV G    G +  A   F+ M    V+ P V 
Sbjct: 361 SGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVI 420

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
            Y+A+I  LCK   ++ A    E M+  G +P+  T++++I GLC  G ++  LE    M
Sbjct: 421 AYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGM 480

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
            +  C P++ TY  L+   C A  ++   +LF++M S    P+  T   +I  +    + 
Sbjct: 481 AERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMIHGLLEVNRD 540

Query: 434 DD 435
           +D
Sbjct: 541 ED 542



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 156/314 (49%), Gaps = 7/314 (2%)

Query: 179 ILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           ++D LCK +KV+KA  LFK    K    DV++Y  + +G    +R  +A ++ +E   +G
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR-KCEIDVVTYTTIVHGFGVVGEIKRA 296
            +P + TYN ++ G  + G+IE A   + +M         VVTY+T++ G     E+ + 
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKG 120

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
             + + M   G  P+  TYN ++  L  +   + A  + E+M   G  P   T+ ++I+G
Sbjct: 121 CKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKG 180

Query: 357 LCHTGEMERALEFVGR--MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
           LC  GE+E A   V    M +    P+V T+N ++   C    I     +F++     C 
Sbjct: 181 LCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCR 240

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           PN+ TY+ LI  +    K D+ L   +LL +MV+ G      T++ V++GLL +G    A
Sbjct: 241 PNVVTYSTLIDGLSKMAKMDEAL---QLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDA 297

Query: 475 KEILRLQSRCGRLP 488
             +LR     G LP
Sbjct: 298 VVVLRQMRDAGCLP 311



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 138/310 (44%), Gaps = 41/310 (13%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   ID  +++        L+ +M  L       T++ + +  +  G+ + AV +   M
Sbjct: 245 TYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQM 304

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRT 223
            + GC     ++NT++D   K +++ +A  L + +    F   V++Y  + +G C   R 
Sbjct: 305 RDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRF 364

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKG------------YF------------------ 253
           ++A+E+L  M  RG  PN  TY+ ++ G            YF                  
Sbjct: 365 DEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSA 424

Query: 254 ------RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
                 +AG+I+EA+ F   M +     DVVT++ +++G    G I     +F GM   G
Sbjct: 425 LIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERG 484

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
            +P + TY  ++  LC+   V+ A  +F++M   G  P+ +T   +I GL      E A 
Sbjct: 485 CVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMIHGLLEVNRDEDA- 543

Query: 368 EFVGRMKDDE 377
               R++D+E
Sbjct: 544 ---KRIQDEE 550



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 3/171 (1%)

Query: 63  PSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTV 122
           P+      +VD + K       +AL +F  ++     A    ++   ID   +       
Sbjct: 381 PNAITYSSIVDGLCK--AGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEA 438

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           +  + RM      P   TF+I+      AG+ D  +++F  M E GC   + ++ T++D 
Sbjct: 439 YEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDR 498

Query: 183 LCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKE 232
           LC+  +V++A++LF+  R      D  +   + +G   V R   A  +  E
Sbjct: 499 LCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMIHGLLEVNRDEDAKRIQDE 549


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 114/382 (29%), Positives = 183/382 (47%), Gaps = 4/382 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  +    R    RT   ++  M S  + P + TF  + + +V  G  + A+++   M
Sbjct: 183 TFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARM 242

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV-FRGKFKADVISYNVIANGWCLVKRT 223
            E GC  +  + N +++  CK  +VE A    +      F+ D I+YN   NG C     
Sbjct: 243 LEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHV 302

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
             AL+V+  MV  G +P++ TYNIV+    + GQ+EEA     +M  R C  D+ T+ T+
Sbjct: 303 GHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTL 362

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +        ++ A ++   +   GV P V T+N +I  LCK      A+ +FEEM   G 
Sbjct: 363 IAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGC 422

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+  TYN +I  LC  G++ +AL+ +  M+   C  +  TYN +I   C    IE   E
Sbjct: 423 TPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEE 482

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           +F++M       N  T+N LI  +   KK DD   A +L+ +M+  G  P   T+N +L 
Sbjct: 483 VFDQMDLQGISRNAITFNTLIDGLCKDKKIDD---AFELINQMISEGLQPNNITYNSILT 539

Query: 464 GLLLIGNQGLAKEILRLQSRCG 485
                G+   A +IL   +  G
Sbjct: 540 HYCKQGDIKKAADILETMTANG 561



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 106/407 (26%), Positives = 191/407 (46%), Gaps = 7/407 (1%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           AL   N       +A  P  ++  I     +     +  LV  M+               
Sbjct: 57  ALRMLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFL 116

Query: 146 ERYVSAGKADRAVKIFLSMHE--HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK- 202
           + Y      D AV + L+  +   G +     +N +L++L +  K++   +++     + 
Sbjct: 117 DSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARG 176

Query: 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262
            K DV+++N +    C   +   A+ +L+EM  RG+ P+ TT+  +++G+   G IE A 
Sbjct: 177 IKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAAL 236

Query: 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322
           R    M +  C    VT   +++G+  +G ++ A       +  G  P   TYN  +  L
Sbjct: 237 RVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGL 296

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
           C+ D V +A+ V + MV +G+ P+  TYN+V+  LC  G++E A   + +M D  C P++
Sbjct: 297 CQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDI 356

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
            T+N LI   C    +E  L+L  ++      P++ T+NILI+++    K  D  +A +L
Sbjct: 357 TTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALC---KVGDPHLALRL 413

Query: 443 LIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPR 489
             EM + G  P + T+N +++ L  +G  G A ++L+     G  PR
Sbjct: 414 FEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG-CPR 459



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 170/341 (49%), Gaps = 3/341 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  I+   ++ D      L   MK+    P + T+  + +   S GK  +A+ +   M
Sbjct: 393 TFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDM 452

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
              GC +S  ++NTI+D LCK+ ++E+A  +F     +    + I++N + +G C  K+ 
Sbjct: 453 ESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKI 512

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A E++ +M+  GL PN  TYN +L  Y + G I++A      M     E+DVVTY T+
Sbjct: 513 DDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTL 572

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++G    G  + A  V  GM   G+ P+   YN ++Q L +++++ +A+ +F EM   G 
Sbjct: 573 INGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGE 632

Query: 344 MPNSTTYNVVIRGLCH-TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
            P++ TY +V RGLC   G ++ A +F+  M D    P   ++ +L     + G  +  +
Sbjct: 633 PPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFI 692

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
              E +   V L   D   I    + +RK  D L   G+ L
Sbjct: 693 RAIEIIMEKVDLRESDVSAIR-GYLKIRKFYDALATFGRFL 732



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 167/368 (45%), Gaps = 34/368 (9%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+ I+       G+ + A  I   M + GC   + +FNT++  LC   ++E+A +L
Sbjct: 319 PDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDL 378

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            +    K    DV ++N++ N  C V   + AL + +EM + G  P+  TYN ++     
Sbjct: 379 ARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCS 438

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G++ +A     +M+   C    +TY TI+ G      I+ A  VFD M   G+  +  T
Sbjct: 439 LGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAIT 498

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           +N +I  LCK   +++A  +  +M+ +G  PN+ TYN ++   C  G++++A + +  M 
Sbjct: 499 FNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMT 558

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
            +  E +V TY  LI   C AG  +  L++   M      P    YN ++ S+F R    
Sbjct: 559 ANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIR 618

Query: 435 DLLV---------------------------------AGKLLIEMVDRGFMPRKFTFNRV 461
           D L                                  A   ++EMVD+GF+P   +F  +
Sbjct: 619 DALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRML 678

Query: 462 LNGLLLIG 469
             GLL +G
Sbjct: 679 AEGLLNLG 686



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 121/448 (27%), Positives = 191/448 (42%), Gaps = 27/448 (6%)

Query: 34  PPAAADPAALASLILTSTDP----RTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHF 89
           P  AA    L + +    DP    R L   L        P++ ++II++L   A+ AL  
Sbjct: 35  PLRAAGQEQLLTALREQPDPDAALRMLNAALARDDFAPGPEVYEEIIRKLG--AVGALDL 92

Query: 90  FNILSYHPTYAHSPSSFDHAIDLAA--RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
             +L              H + L       D      L      L L   Q  F I A+ 
Sbjct: 93  MKVL------VAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADT 146

Query: 148 YV---------SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV 198
            V            K      ++  M   G +  + +FNT++  LC+  +V  A  + + 
Sbjct: 147 VVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEE 206

Query: 199 FRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
              +  A D  ++  +  G+        AL V   M++ G +    T N+++ GY + G+
Sbjct: 207 MSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGR 266

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           +E+A  +  +      E D +TY T V+G      +  A  V D MV  G  P V TYN 
Sbjct: 267 VEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNI 326

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           ++  LCK   +E A  +  +MV +G +P+ TT+N +I  LC    +E AL+   ++    
Sbjct: 327 VVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKG 386

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
             P+V T+NILI   C  G+    L LFE+M +  C P+  TYN LI ++    K   L 
Sbjct: 387 VSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGK---LG 443

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            A  LL +M   G      T+N +++GL
Sbjct: 444 KALDLLKDMESTGCPRSTITYNTIIDGL 471



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 38/218 (17%)

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
           + D V Y  +++      ++K   +V+  M   G+ P V T+N +++ LC+   V  A+L
Sbjct: 143 QADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVL 202

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           + EEM  +G  P+ TT+  +++G    G +E AL    RM +  C     T N+LI  +C
Sbjct: 203 MLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYC 262

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
             G +E  L                                     G +  E+ D GF P
Sbjct: 263 KLGRVEDAL-------------------------------------GYIQQEIAD-GFEP 284

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
            + T+N  +NGL    + G A +++ +  + G  P  F
Sbjct: 285 DQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVF 322


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 112/367 (30%), Positives = 178/367 (48%), Gaps = 44/367 (11%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           R  SL + P   TF+ + +     G+ D A  +F  M   G   ++ ++N +++ LCK  
Sbjct: 171 RDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKAD 230

Query: 188 KVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL---- 242
           K+E+A+ + +    K    DVI+Y+V+ + +C   R ++ALE+L  M  RG  PN+    
Sbjct: 231 KMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPD 290

Query: 243 -TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
             T+NI++ G  +AG  E+A   F EM  +  + DV+T+  ++ G    G+++ AR++ D
Sbjct: 291 KVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILD 350

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M N GV P+V TYNA++  LCK   +E A    EEMV  G +P+S TY  ++  LC   
Sbjct: 351 LMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRAS 410

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
             + AL+ V  +K    +P+  TYNIL+     +G+ E+ + + E               
Sbjct: 411 RTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLE--------------- 455

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481
                                  EMV +G  P  FTF    +GL   GN     E+LR+ 
Sbjct: 456 -----------------------EMVGKGHQPDSFTFAACFSGLHRSGNLAGTMELLRVV 492

Query: 482 SRCGRLP 488
              G LP
Sbjct: 493 LAKGMLP 499



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 112/360 (31%), Positives = 182/360 (50%), Gaps = 16/360 (4%)

Query: 141 FAIIAERYVSAGKADRAVKIFLS-MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-- 197
           + I+ +    AG   RA++IF   M   G   ++ ++NTI++ LCK   +     LF+  
Sbjct: 4   YNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEEL 63

Query: 198 VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
           V RG    DV++YN + +  C      +A  +  +M  RG  PN+ TY++++ G  + G+
Sbjct: 64  VERGHHP-DVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGR 122

Query: 258 IEEAWRFFLEMKKRKCEI--DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG--VLPSVA 313
           I+EA     EM ++ C++  +++TY + + G         A  +   + +G   V P   
Sbjct: 123 IDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTV 182

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           T++ +I  LCK   ++ A  VF++M+  GY+PN  TYN ++ GLC   +MERA   +  M
Sbjct: 183 TFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESM 242

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL-----DTYNILISSMF 428
            D    P+V TY++L+  FC A  ++  LEL   M S  C PN+      T+NILI+   
Sbjct: 243 VDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGAC 302

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
              K+ +   A  L  EMV +   P   TF  +++GL   G    A++IL L    G  P
Sbjct: 303 ---KAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPP 359



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/404 (27%), Positives = 188/404 (46%), Gaps = 15/404 (3%)

Query: 100 AHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRA 157
            H P   +++  ID   +  D      L   M S    P   T++++       G+ D A
Sbjct: 67  GHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEA 126

Query: 158 VKIFLSMHEHGCRQSLN--SFNTILDLLCKEKKVEKAYNLFKVFRG---KFKADVISYNV 212
            ++   M    C    N  ++N+ LD LCK+    +A  L +  R    +   D ++++ 
Sbjct: 127 RELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFST 186

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           + +G C   + ++A  V  +M+  G  PN+ TYN ++ G  +A ++E A      M  + 
Sbjct: 187 LIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKG 246

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV-----ATYNAMIQVLCKKDS 327
              DV+TY+ +V  F     +  A  +  GM + G  P+V      T+N +I   CK  +
Sbjct: 247 VTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGN 306

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
            E A  +FEEMV K   P+  T+  +I GLC  G++E A + +  M +    PNV TYN 
Sbjct: 307 FEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNA 366

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           L+   C +G IE   +  E+M S  C+P+  TY  L+ ++    ++DD L   +L+ E+ 
Sbjct: 367 LVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDAL---QLVSELK 423

Query: 448 DRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
             G+ P   T+N +++GL   G    A  +L      G  P  F
Sbjct: 424 SFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSF 467



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 114/371 (30%), Positives = 184/371 (49%), Gaps = 13/371 (3%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
            M    + PT  T+  I      +      +++F  + E G    + ++NT++D LCK  
Sbjct: 27  EMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPDVVTYNTLIDSLCKAG 86

Query: 188 KVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN--PNLTT 244
            +E+A  L      +    +V++Y+V+ NG C V R ++A E+++EM  +  +  PN+ T
Sbjct: 87  DLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIIT 146

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI--DVVTYTTIVHGFGVVGEIKRARNVFDG 302
           YN  L G  +     EA      ++     +  D VT++T++ G    G+I  A +VFD 
Sbjct: 147 YNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDD 206

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M+ GG +P+V TYNA++  LCK D +E A  + E MV KG  P+  TY+V++   C    
Sbjct: 207 MIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASR 266

Query: 363 MERALEFVGRMKDDECEPNV-----QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
           ++ ALE +  M    C PNV      T+NILI   C AG  E+   LFE+M +    P++
Sbjct: 267 VDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDV 326

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
            T+  LI  +    K+  +  A  +L  M + G  P   T+N +++GL   G    A + 
Sbjct: 327 MTFGALIDGLC---KAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQF 383

Query: 478 LRLQSRCGRLP 488
           L      G +P
Sbjct: 384 LEEMVSSGCVP 394



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 101/199 (50%), Gaps = 8/199 (4%)

Query: 277 VVTYTTIVHGFGVVGEIKRARNVFDG-MVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
           V  Y  ++      G+  RA  +F G M   GV P++ TYN +I  LCK + +   + +F
Sbjct: 1   VADYNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELF 60

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
           EE+V +G+ P+  TYN +I  LC  G++E A    G M    C PNV TY++LI   C  
Sbjct: 61  EELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKV 120

Query: 396 GEIERGLELFEKMGSGVC--LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF-- 451
           G I+   EL ++M    C  LPN+ TYN  +  +  +  + +   A +L+  + D     
Sbjct: 121 GRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAE---ACELMRSLRDGSLRV 177

Query: 452 MPRKFTFNRVLNGLLLIGN 470
            P   TF+ +++GL   G 
Sbjct: 178 SPDTVTFSTLIDGLCKCGQ 196



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 123/280 (43%), Gaps = 6/280 (2%)

Query: 63  PSLHWTPQLVDQIIK-RLWNHALKALHFFNILSYHPTY-AHSPSSFDHAIDLAARLRDYR 120
           P +     LVD   K    + AL+ LH        P        +F+  I  A +  ++ 
Sbjct: 249 PDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFE 308

Query: 121 TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180
               L   M + +L P   TF  + +    AG+ + A  I   M   G   ++ ++N ++
Sbjct: 309 QASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALV 368

Query: 181 DLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
             LCK  ++E+A   L ++       D I+Y  +    C   RT+ AL+++ E+   G +
Sbjct: 369 HGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWD 428

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           P+  TYNI++ G +++G+ E+A     EM  +  + D  T+     G    G +     +
Sbjct: 429 PDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNLAGTMEL 488

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKK---DSVENAILVFE 336
              ++  G+LP   T ++++  +C+    D V+  I  FE
Sbjct: 489 LRVVLAKGMLPDATTCSSILDWVCRSGKLDDVKAMIKEFE 528


>gi|225450630|ref|XP_002278172.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial [Vitis vinifera]
 gi|296089757|emb|CBI39576.3| unnamed protein product [Vitis vinifera]
          Length = 586

 Score =  187 bits (476), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 135/476 (28%), Positives = 229/476 (48%), Gaps = 18/476 (3%)

Query: 13  LHFFCIYRGLSPLTTTSPAPLPPAAADPAA--LASLILTSTDPRTLTQTLHCPSLHW--- 67
           LHF  I   +   +T   A + P    P+   LA++   ST  ++ T T   P   W   
Sbjct: 42  LHFHSI-SAVRSASTAVGAAVDPFTDHPSHHHLAAVDSKSTLLKSYTVTP--PIKPWPQR 98

Query: 68  -TPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLV 126
            +P+ V  +I R  N  L    F +   +H  +AH+  ++   I+  ++ R +  + TL+
Sbjct: 99  LSPKRVVSMISRQQNLDLALQIFDHAGKFHRNFAHNYETYLAMIEKLSKARAFEPMETLI 158

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186
            ++    +   +  F  +   Y  AG+   A++ FL +   G + S+ SFNT+L+ L + 
Sbjct: 159 SQLHKSQIKCGENLFITVIRNYGFAGRPKLAIRTFLRIPSFGLQPSVRSFNTLLNTLVQN 218

Query: 187 KKVEKAYNLFKVFRGKFK--ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
           K+ +  + +FK  R KF    +V + N++    C     + A+ VL+EM   G  PN+ T
Sbjct: 219 KRFDLVHLMFKNCRKKFGIVPNVFTCNILVKALCKKNDIDAAIRVLEEMPAMGFIPNVVT 278

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           Y  +L GY   G +  A R F E+  R    D  TYT ++ G+   G    A  V D M 
Sbjct: 279 YTTILGGYVSKGDMVGARRVFGEILDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEME 338

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
              V P+  TY  +I+  CK+      + + ++M+ K Y+P+S     VI  LC  G++E
Sbjct: 339 ENRVEPNDVTYGVIIEAYCKEKKSGEVLNLLDDMLEKKYIPSSALCCRVIDMLCEEGKVE 398

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
            A E   ++    C P+    + LI + C  G++    +LF++   G  +P+  TYN LI
Sbjct: 399 VACELWKKLLKKNCTPDNAITSTLIHWLCKEGKVWEARKLFDEFEKG-SIPSTLTYNALI 457

Query: 425 SSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           + M    +  +L  A +L   MV++G +P  FT+N ++ G   +GN   A+E +R+
Sbjct: 458 AGMC---EGGELPEAARLWDNMVEKGCVPNAFTYNMLIKGFCKVGN---AREGIRV 507



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 132/271 (48%), Gaps = 2/271 (0%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177
           D      ++  M ++   P   T+  I   YVS G    A ++F  + + G      ++ 
Sbjct: 256 DIDAAIRVLEEMPAMGFIPNVVTYTTILGGYVSKGDMVGARRVFGEILDRGWVPDPTTYT 315

Query: 178 TILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
            ++D  CK+ +   A  +  ++   + + + ++Y VI   +C  K++ + L +L +M+++
Sbjct: 316 ILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGVIIEAYCKEKKSGEVLNLLDDMLEK 375

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
              P+      V+      G++E A   + ++ K+ C  D    +T++H     G++  A
Sbjct: 376 KYIPSSALCCRVIDMLCEEGKVEVACELWKKLLKKNCTPDNAITSTLIHWLCKEGKVWEA 435

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
           R +FD    G + PS  TYNA+I  +C+   +  A  +++ MV KG +PN+ TYN++I+G
Sbjct: 436 RKLFDEFEKGSI-PSTLTYNALIAGMCEGGELPEAARLWDNMVEKGCVPNAFTYNMLIKG 494

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
            C  G     +  +  M D+ C PN  TY I
Sbjct: 495 FCKVGNAREGIRVMEEMLDNGCLPNKATYAI 525



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 2/181 (1%)

Query: 103 PSSFDHAIDLAARLRDYRT--VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P+   + + + A  ++ ++  V  L+  M      P+      + +     GK + A ++
Sbjct: 344 PNDVTYGVIIEAYCKEKKSGEVLNLLDDMLEKKYIPSSALCCRVIDMLCEEGKVEVACEL 403

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV 220
           +  + +  C       +T++  LCKE KV +A  LF  F        ++YN +  G C  
Sbjct: 404 WKKLLKKNCTPDNAITSTLIHWLCKEGKVWEARKLFDEFEKGSIPSTLTYNALIAGMCEG 463

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
               +A  +   MV++G  PN  TYN+++KG+ + G   E  R   EM    C  +  TY
Sbjct: 464 GELPEAARLWDNMVEKGCVPNAFTYNMLIKGFCKVGNAREGIRVMEEMLDNGCLPNKATY 523

Query: 281 T 281
            
Sbjct: 524 A 524


>gi|224111364|ref|XP_002315827.1| predicted protein [Populus trichocarpa]
 gi|222864867|gb|EEF01998.1| predicted protein [Populus trichocarpa]
          Length = 472

 Score =  187 bits (476), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 126/432 (29%), Positives = 208/432 (48%), Gaps = 21/432 (4%)

Query: 52  DPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAID 111
           +   L +TL    L  T  LV  ++ RL      +  FF    +   Y+H P +++  ID
Sbjct: 12  NDHNLEKTLDQLGLELTTDLVLNVLGRLHFEEKTSFRFFMWAGHQKNYSHEPCAYNEMID 71

Query: 112 LAA----RLRDYRTVWTLVHRMK--SLSLGPTQKTFAII---AERYVS-AGKADRAVKIF 161
           +      + R +R V  ++  MK  + ++ P +    I+    E+Y++   K  +  +I 
Sbjct: 72  ILTSTKYKARQFRIVCDMLDYMKRNNKNVVPVEVLLTILRNYTEKYLTRVQKFAKKKRIR 131

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVK 221
           +       +  +N+FN +LD LCK    E A  LFK  + K K D  +YNV+  GWC V+
Sbjct: 132 VKT-----QPEINAFNLLLDALCKCCLAEDAEGLFKRVKNKVKPDANTYNVMFFGWCRVR 186

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
              + ++VL+EM+  G  P+  TY   +  + RAG + EA   F  M+ +   +   T  
Sbjct: 187 NPTRGMKVLEEMIQLGHTPDSFTYITAIDAFCRAGMVNEAAELFEFMRTKGSTMSSPTAK 246

Query: 282 TIVHGFGVVGEIKRARNVF---DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           T     G +    R    F   + M+N G LP V+T+  +I+ +C    ++ A    +EM
Sbjct: 247 TYAIMIGALVRNNRMDECFKLLEDMINSGCLPDVSTFKELIEGMCSAGKIDEAYRFLQEM 306

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
             KGY P+  TYN  ++ LC     E AL    RM +  C P+VQT+N+LI  F + G+ 
Sbjct: 307 GNKGYPPDIVTYNCFLKVLCENKNSEEALRLYERMIEAGCFPSVQTHNMLISMFFEMGDP 366

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           +   E + +M    C  ++DTY ++I  +F   K +D   A  L+ ++V++G       F
Sbjct: 367 DGAFETWYEMDKRGCAQDVDTYIVMIDGLFGCNKVED---ACFLIEDIVNKGMKLPYQKF 423

Query: 459 NRVLNGLLLIGN 470
           +  L  L +IGN
Sbjct: 424 DSFLMQLSVIGN 435



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 7/182 (3%)

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           P +  +N ++  LCK    E+A  +F+ +  K   P++ TYNV+  G C      R ++ 
Sbjct: 136 PEINAFNLLLDALCKCCLAEDAEGLFKRVKNK-VKPDANTYNVMFFGWCRVRNPTRGMKV 194

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM---GSGVCLPNLDTYNILISS 426
           +  M      P+  TY   I  FC AG +    ELFE M   GS +  P   TY I+I +
Sbjct: 195 LEEMIQLGHTPDSFTYITAIDAFCRAGMVNEAAELFEFMRTKGSTMSSPTAKTYAIMIGA 254

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGR 486
           +    + D+     KLL +M++ G +P   TF  ++ G+   G    A   L+     G 
Sbjct: 255 LVRNNRMDECF---KLLEDMINSGCLPDVSTFKELIEGMCSAGKIDEAYRFLQEMGNKGY 311

Query: 487 LP 488
            P
Sbjct: 312 PP 313



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 100/214 (46%), Gaps = 5/214 (2%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYR--TVWTLVHRMKSLSLGPTQKTFA 142
           +A   F  +    +   SP++  +AI + A +R+ R    + L+  M +    P   TF 
Sbjct: 225 EAAELFEFMRTKGSTMSSPTAKTYAIMIGALVRNNRMDECFKLLEDMINSGCLPDVSTFK 284

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFR 200
            + E   SAGK D A +    M   G    + ++N  L +LC+ K  E+A  L++  +  
Sbjct: 285 ELIEGMCSAGKIDEAYRFLQEMGNKGYPPDIVTYNCFLKVLCENKNSEEALRLYERMIEA 344

Query: 201 GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
           G F + V ++N++ + +  +   + A E   EM  RG   ++ TY +++ G F   ++E+
Sbjct: 345 GCFPS-VQTHNMLISMFFEMGDPDGAFETWYEMDKRGCAQDVDTYIVMIDGLFGCNKVED 403

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
           A     ++  +  ++    + + +    V+G I+
Sbjct: 404 ACFLIEDIVNKGMKLPYQKFDSFLMQLSVIGNIR 437


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 112/382 (29%), Positives = 185/382 (48%), Gaps = 4/382 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  +    R    RT   ++  M S  + P + TF  + + +V  G    A+++   M
Sbjct: 187 TFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARM 246

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV-FRGKFKADVISYNVIANGWCLVKRT 223
            E GC  +  + N +++  CK  +VE A    +      F+ D I+YN   NG C     
Sbjct: 247 LEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHV 306

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
             AL+V+  MV  G +P++ TYNIV+    + GQ+EEA     +M +R C  D+ T+ T+
Sbjct: 307 GHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTL 366

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +        ++ A ++   +   G+ P V T+N +I  LCK    + A+ +FEEM   G 
Sbjct: 367 IVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGC 426

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+  TYN +I  LC  G++ +AL+ +  M+   C  +  TYN +I   C    IE   E
Sbjct: 427 TPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEE 486

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           +F++M       N  T+N LI  +   K+ DD   A +L+ +M+  G  P   T+N +L 
Sbjct: 487 VFDQMDLQGISRNAITFNTLIDGLCKDKRIDD---ANQLISQMISEGLQPNNITYNSILT 543

Query: 464 GLLLIGNQGLAKEILRLQSRCG 485
                G+   A +IL+  +  G
Sbjct: 544 HYCKQGDIKKAADILQTMTANG 565



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/307 (31%), Positives = 153/307 (49%), Gaps = 4/307 (1%)

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWC 218
           ++  M E G +  + +FNT++  LC+  +V  A  + +       A D  ++  +  G+ 
Sbjct: 172 VYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFV 231

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
                  AL V   M++ G +P   T N+++ GY + G++E+A  +  +      E D +
Sbjct: 232 EEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQI 291

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TY T V+G    G +  A  V D MV  G  P V TYN ++  LCK   +E A  +  +M
Sbjct: 292 TYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQM 351

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
           V +G +P+ TT+N +I  LC    +E AL+   ++      P+V T+NILI   C  G+ 
Sbjct: 352 VERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDP 411

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           +  L LFE+M S  C P+  TYN LI ++    K   L  A  LL EM   G      T+
Sbjct: 412 QLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGK---LGKALDLLKEMESAGCPRSTVTY 468

Query: 459 NRVLNGL 465
           N +++GL
Sbjct: 469 NTIIDGL 475



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 178/358 (49%), Gaps = 6/358 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P Q T+          G    A+K+   M + G    + ++N +++ LCK  ++E+A  +
Sbjct: 288 PDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGI 347

Query: 196 FK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
               V RG    D+ ++N +    C   R  +AL++ +++  +GL+P++ T+NI++    
Sbjct: 348 LNQMVERGCL-PDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALC 406

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
           + G  + A R F EMK   C  D VTY T++     +G++ +A ++   M + G   S  
Sbjct: 407 KVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTV 466

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           TYN +I  LCKK  +E A  VF++M  +G   N+ T+N +I GLC    ++ A + + +M
Sbjct: 467 TYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQM 526

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
             +  +PN  TYN ++ ++C  G+I++  ++ + M +     ++ TY  LI+ +    K+
Sbjct: 527 ISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLC---KA 583

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
               VA KLL  M  +G       +N V+  L    N   A  + R  +  G  P  F
Sbjct: 584 GRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAF 641



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 165/368 (44%), Gaps = 34/368 (9%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+ I+       G+ + A  I   M E GC   + +FNT++  LC   ++E+A +L
Sbjct: 323 PDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDL 382

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            +    K    DV ++N++ N  C V     AL + +EM   G  P+  TYN ++     
Sbjct: 383 ARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCS 442

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G++ +A     EM+   C    VTY TI+ G      I+ A  VFD M   G+  +  T
Sbjct: 443 LGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAIT 502

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           +N +I  LCK   +++A  +  +M+ +G  PN+ TYN ++   C  G++++A + +  M 
Sbjct: 503 FNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMT 562

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
            +  E +V TY  LI   C AG  +  L+L   M           YN +I S+F R  + 
Sbjct: 563 ANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTR 622

Query: 435 DLL---------------------------------VAGKLLIEMVDRGFMPRKFTFNRV 461
           D +                                  A   L+EMVD+GF+P   +F  +
Sbjct: 623 DAMNLFREMTEVGEPPDAFTYKIVFRGLCRGGGSIREAFDFLLEMVDKGFIPEFSSFRML 682

Query: 462 LNGLLLIG 469
             GLL +G
Sbjct: 683 AEGLLNLG 690



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 169/341 (49%), Gaps = 3/341 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  I+   ++ D +    L   MKS    P + T+  + +   S GK  +A+ +   M
Sbjct: 397 TFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEM 456

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
              GC +S  ++NTI+D LCK+ ++E+A  +F     +    + I++N + +G C  KR 
Sbjct: 457 ESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRI 516

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A +++ +M+  GL PN  TYN +L  Y + G I++A      M     E+DVVTY T+
Sbjct: 517 DDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTL 576

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++G    G  + A  +  GM   G+  +   YN +IQ L ++++  +A+ +F EM   G 
Sbjct: 577 INGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEVGE 636

Query: 344 MPNSTTYNVVIRGLCH-TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
            P++ TY +V RGLC   G +  A +F+  M D    P   ++ +L     + G  +  +
Sbjct: 637 PPDAFTYKIVFRGLCRGGGSIREAFDFLLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFI 696

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
              E +     L + D   I    + +RK  D L   G+LL
Sbjct: 697 RAIEIIIEKADLGDSDVSAIR-GYLKIRKFYDALATFGRLL 736



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 114/229 (49%), Gaps = 3/229 (1%)

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           G+  +   YN +L       +++     + EM +R  + DVVT+ T++       +++ A
Sbjct: 145 GIQADTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTA 204

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
             + + M + GV P   T+  ++Q   ++ S++ A+ V   M+  G  P   T NV+I G
Sbjct: 205 VLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLING 264

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
            C  G +E AL ++ +   +  EP+  TYN  +   C  G +   L++ + M      P+
Sbjct: 265 YCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPD 324

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           + TYNI+++ +    K+  L  A  +L +MV+RG +P   TFN ++  L
Sbjct: 325 VFTYNIVVNCLC---KNGQLEEAKGILNQMVERGCLPDITTFNTLIVAL 370



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 103/215 (47%), Gaps = 3/215 (1%)

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
           + D V Y  +++      ++K    V+  M   G+ P V T+N +++ LC+   V  A+L
Sbjct: 147 QADTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVL 206

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           + EEM   G  P+ TT+  +++G    G ++ AL    RM +  C P   T N+LI  +C
Sbjct: 207 MLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYC 266

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
             G +E  L   ++  +    P+  TYN  ++ +    ++  +  A K++  MV  G  P
Sbjct: 267 KLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLC---QNGHVGHALKVMDVMVQEGHDP 323

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             FT+N V+N L   G    AK IL      G LP
Sbjct: 324 DVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLP 358


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 176/344 (51%), Gaps = 4/344 (1%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID   + ++    + L   M S  +     T++ +   +   GK   A+ +F  M     
Sbjct: 217 IDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENI 276

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
              + +FN ++D  CKE +V++A N L  + +   K D+++YN + +G+CLV   N A  
Sbjct: 277 NPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKS 336

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           +L  M  RG+   + +YNIV+ G+ +   +++A + F EM  ++   +V+TY +++ G  
Sbjct: 337 ILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLC 396

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G I  A  + D M + G  P + TY++++  LCK   V+ AI +  ++  +G  PN  
Sbjct: 397 KSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMY 456

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           TY ++I GLC  G +E A      +        V TY ++I+ FC  G  +  L L  KM
Sbjct: 457 TYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKM 516

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
               C+P+  TY I+I S+F + ++D    A KLL EM+ RG +
Sbjct: 517 KDNSCIPDAITYEIIICSLFDKDENDK---AEKLLREMITRGLL 557



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 174/309 (56%), Gaps = 7/309 (2%)

Query: 176 FNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           ++TI+D +CK+K V  A++L+ ++   +  +++++Y+ + +G+C+V +   A+ +  +M 
Sbjct: 213 YSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMT 272

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
              +NP++ T+NI++  + + G+++EA      M K+  + D+VTY +++ G+ +V E+ 
Sbjct: 273 SENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVN 332

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
            A+++ + M + GV  +V +YN +I   CK   V+ A+ +F+EM  K   PN  TYN +I
Sbjct: 333 MAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLI 392

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
            GLC +G +  ALE +  M D   +P++ TY+ ++   C    +++ + L  K+      
Sbjct: 393 DGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIR 452

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           PN+ TY ILI  +    + +D   A  +  +++ +G+     T+  ++ G     + GL 
Sbjct: 453 PNMYTYTILIDGLCKGGRLED---ARNIFEDLLVKGYNLTVNTYTVMIQGFC---SHGLF 506

Query: 475 KEILRLQSR 483
            E L L S+
Sbjct: 507 DEALSLLSK 515



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 112/437 (25%), Positives = 192/437 (43%), Gaps = 44/437 (10%)

Query: 81  NHALKALHFFN-ILSYHPTYAHSPS-SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQ 138
           N  + A+  FN +L  +PT    P   F   +    + + Y TV +L  +M+   + P  
Sbjct: 49  NDVVDAVSLFNCLLRQNPT---PPDMEFGQILGSLVKSKHYHTVLSLFQKMEYRGIKPNF 105

Query: 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHG--------------------CRQSLN---- 174
             F I+   +   G    A  +   + + G                      Q+LN    
Sbjct: 106 VNFNILINCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDK 165

Query: 175 -----------SFNTILDLLCKEKKVEKAYNLFKVFRGKF-KADVISYNVIANGWCLVKR 222
                      S+ T+++ LCK  +   A  L +   GK  + DV+ Y+ I +  C  K 
Sbjct: 166 LVALGFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKN 225

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
            N A ++  EMV R ++ N+ TY+ ++ G+   G++++A   F +M       DV T+  
Sbjct: 226 VNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNI 285

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           +V  F   G +K A+N    M+  G+ P + TYN+++   C  + V  A  +   M  +G
Sbjct: 286 LVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRG 345

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
                 +YN+VI G C    +++A++    M   +  PNV TYN LI   C +G I   L
Sbjct: 346 VTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYAL 405

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           EL + M      P++ TY+ ++ ++      D    A  LLI++ D+G  P  +T+  ++
Sbjct: 406 ELIDLMHDRGQQPDIITYSSILDALCKNHLVDK---AIALLIKLKDQGIRPNMYTYTILI 462

Query: 463 NGLLLIGNQGLAKEILR 479
           +GL   G    A+ I  
Sbjct: 463 DGLCKGGRLEDARNIFE 479



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 158/350 (45%), Gaps = 41/350 (11%)

Query: 176 FNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           F  IL  L K K      +LF+   +RG  K + +++N++ N +C +     A  VL ++
Sbjct: 73  FGQILGSLVKSKHYHTVLSLFQKMEYRG-IKPNFVNFNILINCFCQLGLIPFAFSVLAKI 131

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           +  G  P+  T N  +KG+   GQI +A  F  ++      +D V+Y T+++G   VGE 
Sbjct: 132 LKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGET 191

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           + A  +   +    V   V  Y+ +I  +CK  +V +A  ++ EMV +    N  TY+ +
Sbjct: 192 RAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSAL 251

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG---EIERGLELFEKMG- 409
           I G C  G+++ A+    +M  +   P+V T+NIL+  FC  G   E + GL +  K G 
Sbjct: 252 ISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGI 311

Query: 410 -----------SGVCLPN--------------------LDTYNILISSMFVRKKSDDLLV 438
                       G CL N                    + +YNI+I+     K  D    
Sbjct: 312 KPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQ--- 368

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           A KL  EM  +   P   T+N +++GL   G    A E++ L    G+ P
Sbjct: 369 AMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQP 418



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/369 (22%), Positives = 159/369 (43%), Gaps = 58/369 (15%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  +D    + +     ++++ M    +  T +++ I+   +      D+A+K+F  M
Sbjct: 317 TYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEM 376

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKR 222
           H      ++ ++N+++D LCK  ++  A  L  +   RG+ + D+I+Y+ I +  C    
Sbjct: 377 HHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQ-QPDIITYSSILDALCKNHL 435

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
            +KA+ +L ++ D+G+ PN+ TY I++ G  + G++E+A   F ++  +   + V TYT 
Sbjct: 436 VDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTV 495

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++ GF   G    A ++   M +   +P   TY  +I  L  KD  + A  +  EM+ +G
Sbjct: 496 MIQGFCSHGLFDEALSLLSKMKDNSCIPDAITYEIIICSLFDKDENDKAEKLLREMITRG 555

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVG------------------------------- 371
            +     Y+ +  G      M     F+                                
Sbjct: 556 LL-----YSFLEYGSWSLSFMAAPAHFLNNDSLQCTSSQESGNWAKLLLERIYCDCVLTK 610

Query: 372 ---RMKDDECEP----------------NVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
              R KD EC                  +V TY ++I+ FC  G  +  L L  KM    
Sbjct: 611 SNMRDKDVECPSVIIYSTCDWSKQGYILDVNTYTVMIQGFCSHGLFDESLALLSKMEVNG 670

Query: 413 CLPNLDTYN 421
           C+P+  TY+
Sbjct: 671 CIPDAVTYD 679



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/354 (21%), Positives = 148/354 (41%), Gaps = 47/354 (13%)

Query: 79  LWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQ 138
           L N    A    N +S+    A +  S++  I+   +++       L   M    + P  
Sbjct: 327 LVNEVNMAKSILNTMSHRGVTA-TVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNV 385

Query: 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV 198
            T+  + +    +G+   A+++   MH+ G +  + ++++ILD LCK   V+KA  L   
Sbjct: 386 ITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIK 445

Query: 199 FRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
            + +  + ++ +Y ++ +G C   R   A  + ++++ +G N  + TY ++++G+   G 
Sbjct: 446 LKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGL 505

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY-- 315
            +EA     +MK   C  D +TY  I+       E  +A  +   M+  G+L S   Y  
Sbjct: 506 FDEALSLLSKMKDNSCIPDAITYEIIICSLFDKDENDKAEKLLREMITRGLLYSFLEYGS 565

Query: 316 --------------NAMIQVLCKKDSVENAILVFEEMV---------------------- 339
                         N  +Q    ++S   A L+ E +                       
Sbjct: 566 WSLSFMAAPAHFLNNDSLQCTSSQESGNWAKLLLERIYCDCVLTKSNMRDKDVECPSVII 625

Query: 340 -------GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
                   +GY+ +  TY V+I+G C  G  + +L  + +M+ + C P+  TY+
Sbjct: 626 YSTCDWSKQGYILDVNTYTVMIQGFCSHGLFDESLALLSKMEVNGCIPDAVTYD 679



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 91/232 (39%), Gaps = 44/232 (18%)

Query: 279 TYTTIVHGFGVV------GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
           T+   +H F          ++  A ++F+ ++     P    +  ++  L K       +
Sbjct: 31  THFYFIHSFSTSTTFHNNNDVVDAVSLFNCLLRQNPTPPDMEFGQILGSLVKSKHYHTVL 90

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
            +F++M  +G  PN   +N++I   C  G +  A   + ++     EP+  T N  I+ F
Sbjct: 91  SLFQKMEYRGIKPNFVNFNILINCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGF 150

Query: 393 CDAGEIERGLELFEKMGS---------------GVC------------------LPNLDT 419
           C  G+I + L   +K+ +               G+C                  L  LD 
Sbjct: 151 CLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDV 210

Query: 420 --YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
             Y+ +I SM   K  +D   A  L  EMV R       T++ +++G  ++G
Sbjct: 211 VMYSTIIDSMCKDKNVND---AFDLYSEMVSRRISSNIVTYSALISGFCIVG 259


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 187/366 (51%), Gaps = 4/366 (1%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            LV +M      P   T+  +       G  D A+ +   M +      +  +NTI+D L
Sbjct: 206 ALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGL 265

Query: 184 CKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CK K ++ A+ LF     K  + DV +YN + +  C   R + A  +L  M++R +NPN+
Sbjct: 266 CKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNV 325

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            T++ ++  + + G++ EA + + EM KR  + D+ TY+++++GF +   +  A+++F+ 
Sbjct: 326 VTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFEL 385

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M++    P+V TYN +I+  CK   VE  + +F EM  +G + N+ TYN +I+GL   G+
Sbjct: 386 MISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGD 445

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
            + A +   +M  D   P++ TY+IL+   C  G++E+ L +FE +      P++ TYNI
Sbjct: 446 CDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNI 505

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           +I  M    K +D      L   +  +G  P    +  +++G    G +  A  + R   
Sbjct: 506 MIEGMCKAGKVED---GWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMK 562

Query: 483 RCGRLP 488
             G LP
Sbjct: 563 EDGTLP 568



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 184/361 (50%), Gaps = 4/361 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           ++  ID   + +     + L ++M++  + P   T+  +     + G+   A ++  +M 
Sbjct: 258 YNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMI 317

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTN 224
           E     ++ +F+ ++D   KE K+ +A  L+ ++ +     D+ +Y+ + NG+C+  R +
Sbjct: 318 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 377

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           +A  + + M+ +   PN+ TYN ++KG+ +A ++EE    F EM +R    + VTY T++
Sbjct: 378 EAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLI 437

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            G    G+   A+ +F  MV+ GV P + TY+ ++  LCK   +E A++VFE +      
Sbjct: 438 QGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKME 497

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           P+  TYN++I G+C  G++E   +    +     +PNV  Y  +I  FC  G  E    L
Sbjct: 498 PDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADAL 557

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           F +M     LP+   YN LI +   R +  D   + +L+ EM   GF+    T + V+N 
Sbjct: 558 FREMKEDGTLPDSGCYNTLIRA---RLRDGDKAASAELIKEMRSCGFVGDASTISMVINM 614

Query: 465 L 465
           L
Sbjct: 615 L 615



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 185/375 (49%), Gaps = 4/375 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           F+  +   A+++ +  V +L  RM++L +     ++ I+   +    +   A+ +   M 
Sbjct: 83  FNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMM 142

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTN 224
           + G    + + +++L+  C  K++  A  L  ++    +K D +++N + +G  L  + +
Sbjct: 143 KLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKAS 202

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           +A+ ++ +MV RG  P+L TY  V+ G  + G I+ A     +M+K K E DVV Y TI+
Sbjct: 203 EAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTII 262

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            G      I  A  +F+ M   G+ P V TYN++I  LC      +A  +   M+ +   
Sbjct: 263 DGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKIN 322

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           PN  T++ +I      G++  A +    M     +P++ TY+ LI  FC    ++    +
Sbjct: 323 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 382

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           FE M S  C PN+ TYN LI      K+ ++ +   +L  EM  RG +    T+N ++ G
Sbjct: 383 FELMISKDCFPNVVTYNTLIKGFCKAKRVEEGM---ELFREMSQRGLVGNTVTYNTLIQG 439

Query: 465 LLLIGNQGLAKEILR 479
           L   G+  +A++I +
Sbjct: 440 LFQAGDCDMAQKIFK 454



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 136/277 (49%), Gaps = 2/277 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L   M   S+ P   T++ +   +    + D A  +F  M    C  ++ ++NT++   C
Sbjct: 347 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFC 406

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K K+VE+   LF+    +    + ++YN +  G       + A ++ K+MV  G+ P++ 
Sbjct: 407 KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDII 466

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY+I+L G  + G++E+A   F  ++K K E D+ TY  ++ G    G+++   ++F  +
Sbjct: 467 TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 526

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              GV P+V  Y  MI   C+K   E A  +F EM   G +P+S  YN +IR     G+ 
Sbjct: 527 SLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDK 586

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
             + E +  M+      +  T +++I    D G +E+
Sbjct: 587 AASAELIKEMRSCGFVGDASTISMVINMLHD-GRLEK 622



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 174/356 (48%), Gaps = 17/356 (4%)

Query: 132 LSLGPTQKTFAIIAERYVSAGKADRAVK---IFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           L +  +Q     +A+R+    KA        ++ S   +  R+ L S N +L+L     K
Sbjct: 7   LGIVASQSKKMSLAKRFAQLRKASPLFSLRGVYFSAASYDYREKL-SRNALLNL-----K 60

Query: 189 VEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           ++ A  LF ++ + +    ++ +N + +    +K+ +  + + + M +  ++ +L +YNI
Sbjct: 61  LDDAIGLFGEMVQSRPLPSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNI 120

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++  + R  Q+  A     +M K   E D+VT +++++G+     I  A  + D MV  G
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 180

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
             P   T+N +I  L   +    A+ + ++MV +G  P+  TY  V+ GLC  G+++ AL
Sbjct: 181 YKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLAL 240

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
             + +M+  + E +V  YN +I   C    I+    LF KM +    P++ TYN LIS +
Sbjct: 241 SLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCL 300

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL----LIGNQGLAKEILR 479
               +  D   A +LL  M++R   P   TF+ +++  +    L+  + L  E+++
Sbjct: 301 CNYGRWSD---ASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIK 353


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 179/338 (52%), Gaps = 9/338 (2%)

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
           S+  +  TF+I+    V AG   +A  +      +GC   ++++  I++ L K KK+++A
Sbjct: 219 SMPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEA 278

Query: 193 YNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
             L  K+        + +YN + NG C + R  +A+++L+++VD G  P++ TY  ++ G
Sbjct: 279 VALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDG 338

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
             +  +  EA++ F EM  R   +D V YT ++ G    G+I +A +V+  M + G +P 
Sbjct: 339 LGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPD 398

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
           V T + MI  L K   +  A+ +F+ M  +G  PN   Y+ +I GLC   +M+ ALE + 
Sbjct: 399 VVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLA 458

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
           +MK   C P+  TYNILI   C +G++E     F++M    C P++ TYNILIS +    
Sbjct: 459 QMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAG 518

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
            +D    A  +L +M        +F ++ +++GL   G
Sbjct: 519 NTD---AACGVLDDMSS-----SRFVYSSLVDGLCKSG 548



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 172/367 (46%), Gaps = 36/367 (9%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KV 198
           T+  I        K   AV +   +  +GC  ++ ++N +L+ LCK  ++E+A +L  K+
Sbjct: 261 TYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKI 320

Query: 199 FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
                  DV++Y  + +G    KR+ +A ++ KEM  RGL  +   Y  +++G  + G+I
Sbjct: 321 VDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKI 380

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
            +A   +  M    C  DVVT +T++ G    G I  A  +F  M   G+ P+   Y+A+
Sbjct: 381 PQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSAL 440

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           I  LCK   ++ A+ +  +M      P++ TYN++I GLC +G++E A  F   M +  C
Sbjct: 441 IHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGC 500

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGS----------GVC--------------- 413
           +P+V TYNILI   C AG  +    + + M S          G+C               
Sbjct: 501 KPDVYTYNILISGLCKAGNTDAACGVLDDMSSSRFVYSSLVDGLCKSGKLEGGCMLFHEM 560

Query: 414 ----LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
               + N  T   LI  +    + D+ +     L   + +  MP  + +N +++ L+  G
Sbjct: 561 ERSGVANSQTRTRLIFHLCKANRVDEAVS----LFNAIRKEGMPHPYAYNSIISALIKSG 616

Query: 470 --NQGLA 474
             N+G A
Sbjct: 617 KVNEGQA 623



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/416 (26%), Positives = 183/416 (43%), Gaps = 39/416 (9%)

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           + HS  + +  +D+ AR + +R    L+    +    P  +T+ ++   Y  A + + A 
Sbjct: 115 FQHSVHTGNALLDVFARTKRHREAGNLLKNELATIFRPDVETWNVLITGYCLAREPEEAF 174

Query: 159 KIFLSMHEH-GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR---------------GK 202
            +   M E  G   SL + N +L  LCK  KV  A + F+  R               G 
Sbjct: 175 AVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAAMDHFEAVRRSMPVSAATFSILINGL 234

Query: 203 FKA--------------------DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
            KA                    D+ +Y  I N     K+  +A+ +++++   G  P +
Sbjct: 235 VKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTI 294

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TYN +L G  + G++EEA     ++    C  DVVTYT+++ G G       A  +F  
Sbjct: 295 ATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKE 354

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M + G+      Y A+I+ L +   +  A  V++ M   G +P+  T + +I GL   G 
Sbjct: 355 MASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGR 414

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           +  A+     M+     PN   Y+ LI   C A +++  LE+  +M    C P+  TYNI
Sbjct: 415 IGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNI 474

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           LI  +    KS D+  A     EM++ G  P  +T+N +++GL   GN   A  +L
Sbjct: 475 LIDGLC---KSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVL 527



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 152/339 (44%), Gaps = 43/339 (12%)

Query: 154 ADRAVKIF--LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISY 210
           AD A ++F  LS    G + S+++ N +LD+  + K+  +A NL K      F+ DV ++
Sbjct: 98  ADLAWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHREAGNLLKNELATIFRPDVETW 157

Query: 211 NVIANGWCLVKRTNKALEVLKEMV-DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           NV+  G+CL +   +A  V++EM  D G+ P+L T+N+VL G  ++G++  A   F E  
Sbjct: 158 NVLITGYCLAREPEEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAAMDHF-EAV 216

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
           +R   +   T++ +++G    G + +A ++       G    + TY A++  L K   + 
Sbjct: 217 RRSMPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKI- 275

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
                                             + A+  + ++  + C P + TYN L+
Sbjct: 276 ----------------------------------QEAVALMEKITANGCTPTIATYNALL 301

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
              C  G +E  ++L  K+    C P++ TY  LI  +   K+S     A KL  EM  R
Sbjct: 302 NGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRS---FEAYKLFKEMASR 358

Query: 450 GFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           G       +  ++ GLL  G    A  + +  +  G +P
Sbjct: 359 GLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVP 397



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 132/319 (41%), Gaps = 69/319 (21%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
            + L   M S  L      +  +    +  GK  +A  ++ +M  HGC   + + +T++D
Sbjct: 348 AYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMID 407

Query: 182 LLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
            L K  ++  A  +FK    +  A + + Y+ + +G C  ++ + ALE+L +M      P
Sbjct: 408 GLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTP 467

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF----------GVV 290
           +  TYNI++ G  ++G +E A  FF EM +  C+ DV TY  ++ G           GV+
Sbjct: 468 DTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVL 527

Query: 291 GEIKRARNVFDGMVNG--------------------GV---------------------- 308
            ++  +R V+  +V+G                    GV                      
Sbjct: 528 DDMSSSRFVYSSLVDGLCKSGKLEGGCMLFHEMERSGVANSQTRTRLIFHLCKANRVDEA 587

Query: 309 -----------LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
                      +P    YN++I  L K   V     V++EM  + + P+  TYN ++ G+
Sbjct: 588 VSLFNAIRKEGMPHPYAYNSIISALIKSGKVNEGQAVYQEMT-RWWKPDRVTYNALLNGM 646

Query: 358 CHTGEMERA----LEFVGR 372
                M+RA    LE  GR
Sbjct: 647 IGANRMDRAHYYYLEMTGR 665



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L H M+   +  +Q    +I      A + D AV +F ++ + G      ++N+I+  L 
Sbjct: 556 LFHEMERSGVANSQTRTRLIFH-LCKANRVDEAVSLFNAIRKEGMPHPY-AYNSIISALI 613

Query: 185 KEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  KV +   +++     +K D ++YN + NG     R ++A     EM  RG  P ++
Sbjct: 614 KSGKVNEGQAVYQEMTRWWKPDRVTYNALLNGMIGANRMDRAHYYYLEMTGRGYVPPVS 672


>gi|357498963|ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494785|gb|AES75988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 582

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/351 (30%), Positives = 183/351 (52%), Gaps = 4/351 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           ++  ID   + +     + L  +M +  + P   T   +   +   G+   AV +   M 
Sbjct: 213 YNMIIDNMCKAKLVNDAFDLYSQMVAKRISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMI 272

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV-FRGKFKADVISYNVIANGWCLVKRTN 224
                  + +F+ ++D  CKE KV++A  +  V  +     DV++YN + +G+CLVK  N
Sbjct: 273 LENINPRMYTFSILVDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEIN 332

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           KA ++   M  RG+  N+ +Y  ++ G  +   ++EA   F EM+ RK   +VVTY +++
Sbjct: 333 KAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLI 392

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            G G +G+I     + D M + G  P++ TYN+++  LCK   V+ AI +   +  +G  
Sbjct: 393 DGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIR 452

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           P+  TY V+I+GLC +G++E A +    +       +V TY ++I+ FC  G  +  L L
Sbjct: 453 PDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVKGYNLDVYTYTVMIQGFCVKGLFDAALAL 512

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
             KM    C+PN  TY I+I S+F + ++D   +A KLL EM+ RG +  K
Sbjct: 513 LSKMEDNGCIPNAKTYEIVILSLFEKDEND---MAEKLLREMIARGLLDEK 560



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 170/315 (53%), Gaps = 4/315 (1%)

Query: 176 FNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           +N I+D +CK K V  A++L+ ++   +   D  + N +  G+C++ +  +A+ +L +M+
Sbjct: 213 YNMIIDNMCKAKLVNDAFDLYSQMVAKRISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMI 272

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
              +NP + T++I++  + + G+++EA        K+   +DVVTY +++ G+ +V EI 
Sbjct: 273 LENINPRMYTFSILVDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEIN 332

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
           +A+++FD M + GV+ +V +Y  MI  LCK   V+ A+ +FEEM  +  +PN  TYN +I
Sbjct: 333 KAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLI 392

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
            GL   G++   L+ V  M D    PN+ TYN ++   C    +++ + L   +      
Sbjct: 393 DGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIR 452

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           P++ TY +LI  +    K +D   A K+  +++ +G+    +T+  ++ G  + G    A
Sbjct: 453 PDMYTYTVLIKGLCQSGKLED---AQKVFEDLLVKGYNLDVYTYTVMIQGFCVKGLFDAA 509

Query: 475 KEILRLQSRCGRLPR 489
             +L      G +P 
Sbjct: 510 LALLSKMEDNGCIPN 524



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/377 (25%), Positives = 180/377 (47%), Gaps = 4/377 (1%)

Query: 90  FNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149
           FN L +H         F+  +    + + + T  +L  +M+   +     TF I+   + 
Sbjct: 57  FNSLLHHKNPTPPIIQFNKILSSLVKAKHHSTALSLHQQMELNGIVSDFFTFNILINCFS 116

Query: 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVI 208
             G    +  +F  + + G   +  +FNT++  LC +  + +A N   KV    F  D +
Sbjct: 117 QLGLNSLSFSVFGKILKKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQGFHLDQV 176

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           SY  + NG C V R   AL++LK +  + + PN   YN+++    +A  + +A+  + +M
Sbjct: 177 SYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQM 236

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
             ++   D  T  ++++GF ++G++K A  +   M+   + P + T++ ++   CK+  V
Sbjct: 237 VAKRISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSILVDAFCKEGKV 296

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           + A ++    + K  + +  TYN ++ G C   E+ +A +    M       NVQ+Y  +
Sbjct: 297 KEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQSYTTM 356

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           I   C    ++  + LFE+M     +PN+ TYN LI  +    K   +L   KL+ EM D
Sbjct: 357 INGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVL---KLVDEMHD 413

Query: 449 RGFMPRKFTFNRVLNGL 465
           RG  P   T+N +L+ L
Sbjct: 414 RGQPPNIITYNSILDAL 430



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 87/195 (44%), Gaps = 6/195 (3%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   +L     V  LV  M      P   T+  I +        D+A+ +  ++
Sbjct: 387 TYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNL 446

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
            + G R  + ++  ++  LC+  K+E A  +F+    K +  DV +Y V+  G+C+    
Sbjct: 447 KDQGIRPDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVKGYNLDVYTYTVMIQGFCVKGLF 506

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR-----KCEIDVV 278
           + AL +L +M D G  PN  TY IV+   F   + + A +   EM  R     K  I + 
Sbjct: 507 DAALALLSKMEDNGCIPNAKTYEIVILSLFEKDENDMAEKLLREMIARGLLDEKSYIYLA 566

Query: 279 TYTTIVHGFGVVGEI 293
           +  T V G G  G +
Sbjct: 567 SKETGVMGMGAAGTV 581



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/170 (18%), Positives = 64/170 (37%), Gaps = 38/170 (22%)

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           P +  +N ++  L K      A+ + ++M   G + +  T+N++I      G    +   
Sbjct: 68  PPIIQFNKILSSLVKAKHHSTALSLHQQMELNGIVSDFFTFNILINCFSQLGLNSLSFSV 127

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
            G++     +PN  T+N LI+  C  G I + L   +K+                     
Sbjct: 128 FGKILKKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKV--------------------- 166

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
                            V +GF   + ++  ++NGL  +G    A ++L+
Sbjct: 167 -----------------VAQGFHLDQVSYGTLINGLCKVGRITAALQLLK 199


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/405 (28%), Positives = 195/405 (48%), Gaps = 6/405 (1%)

Query: 90  FNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
           F++L+        P+  +F   I+   ++  +     L   M +    P   T+  I   
Sbjct: 30  FSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVELFDDMVARGCQPDDYTYTTIING 89

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKAD 206
               G+   A  +F  M E GC+ ++ +++T++  LCK ++V +A ++F   + K     
Sbjct: 90  LCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPT 149

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           + +Y  +  G C   R  +A  +L EM    + PN+ T+N+++  + + G++  A     
Sbjct: 150 IFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLK 209

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
            M +   E DVVTY ++++G+ +  E+  AR +FD M+  G  P V +Y+ +I   CK  
Sbjct: 210 TMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAK 269

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            ++ A  +F EM+ +G  PN+ +YN +I GLC  G +  A +    M  +   PN+ TY 
Sbjct: 270 RIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYA 329

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
           IL+  FC  G + +   LF  M S    PNL  YNIL+++M    KS +L  A +L  E+
Sbjct: 330 ILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMC---KSGNLKDARELFSEL 386

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
              G  P    +  ++NGL   G    A E  R     G  P +F
Sbjct: 387 FVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEF 431



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 165/325 (50%), Gaps = 4/325 (1%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           MK+  + PT  T+  + +   +  +   A  +   M       ++ +FN ++D  CKE K
Sbjct: 141 MKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGK 200

Query: 189 VEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           V  A  + K       + DV++YN +  G+ +     +A ++   M+ +G  P++ +Y+I
Sbjct: 201 VLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSI 260

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ GY +A +I+EA + F EM  +    + V+Y T++HG   +G ++ A+++F  M   G
Sbjct: 261 LINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNG 320

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
            LP++ TY  ++   CK+  +  A  +F  M      PN   YN+++  +C +G ++ A 
Sbjct: 321 NLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDAR 380

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           E    +     +PNVQ Y  +I   C  G ++  LE F  M    C P+  +YN++I   
Sbjct: 381 ELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIRG- 439

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFM 452
           F++ K +   V   L+ EM DRGF+
Sbjct: 440 FLQHKDESRAV--HLIGEMRDRGFI 462



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 169/329 (51%), Gaps = 4/329 (1%)

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKR 222
           M   G   +  + N +++  C+ ++V+  ++ L K  +   +  ++++  + NG   V +
Sbjct: 1   MELAGLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGK 60

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
             +A+E+  +MV RG  P+  TY  ++ G  + G+   A   F +M++  C+++VVTY+T
Sbjct: 61  FAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYST 120

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++H       +  A ++F  M    + P++ TY ++IQ LC     + A  +  EM    
Sbjct: 121 LIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLN 180

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
            MPN  T+NV++   C  G++  A   +  M +   EP+V TYN L+  +    E+    
Sbjct: 181 IMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEAR 240

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           +LF+ M +  C P++ +Y+ILI+     K+ D+   A +L  EM+ +G  P   ++N ++
Sbjct: 241 KLFDVMITKGCKPDVFSYSILINGYCKAKRIDE---AKQLFNEMIHQGSTPNNVSYNTLI 297

Query: 463 NGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           +GL  +G    A+++ +     G LP  +
Sbjct: 298 HGLCQLGRLREAQDLFKNMHTNGNLPNLY 326



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 112/237 (47%), Gaps = 8/237 (3%)

Query: 121 TVWTLVHRMKSL-------SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
           ++WT V   + L          P   +++I+   Y  A + D A ++F  M   G   + 
Sbjct: 231 SMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNN 290

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKFK-ADVISYNVIANGWCLVKRTNKALEVLKE 232
            S+NT++  LC+  ++ +A +LFK         ++ +Y ++ +G+C      KA  + + 
Sbjct: 291 VSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRA 350

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M    L PNL  YNI++    ++G +++A   F E+     + +V  YTTI++G    G 
Sbjct: 351 MQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGL 410

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
           +  A   F  M + G  P   +YN +I+   +      A+ +  EM  +G++ ++ T
Sbjct: 411 LDEALEAFRNMEDDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRGFITDAGT 467


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 111/397 (27%), Positives = 197/397 (49%), Gaps = 39/397 (9%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            LV RM      P   T+ ++       G  D A  +   M        +  FNTI+D L
Sbjct: 135 ALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSL 194

Query: 184 CKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CK + V+ A NLFK    K  + +V++Y+ + +  C   R + A ++L +M+++ +NPNL
Sbjct: 195 CKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNL 254

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            T+N ++  + + G+  EA +   +M KR  + D+ TY ++++GF +   + +A+ +F+ 
Sbjct: 255 VTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEF 314

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           MV+    P + TYN +I+  CK   VE+   +F EM  +G + ++ TY  +I+GL H G+
Sbjct: 315 MVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGD 374

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG------------- 409
            + A +   +M  D   P++ TY+IL+   C+ G++E+ LE+F+ M              
Sbjct: 375 CDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTT 434

Query: 410 --SGVC--------------------LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
              G+C                     PN+ TYN +IS +  ++    L  A  LL +M 
Sbjct: 435 MIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRL---LQEAYALLKKMK 491

Query: 448 DRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484
           + G +P   T+N ++   L  G++  + E++R    C
Sbjct: 492 EDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSC 528



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 102/361 (28%), Positives = 171/361 (47%), Gaps = 4/361 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           F+  ID   + R       L   M++  + P   T++ +     S G+   A ++   M 
Sbjct: 187 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 246

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTN 224
           E     +L +FN ++D   KE K  +A  L   + +     D+ +YN + NG+C+  R +
Sbjct: 247 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLD 306

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           KA ++ + MV +   P+L TYN ++KG+ ++ ++E+    F EM  R    D VTYTT++
Sbjct: 307 KAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 366

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            G    G+   A+ VF  MV+ GV P + TY+ ++  LC    +E A+ VF+ M      
Sbjct: 367 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIK 426

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
            +   Y  +I G+C  G+++   +    +     +PNV TYN +I   C    ++    L
Sbjct: 427 LDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYAL 486

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
            +KM     LP+  TYN LI +     +  D   + +L+ EM    F+    T   V N 
Sbjct: 487 LKKMKEDGPLPDSGTYNTLIRAHL---RDGDKAASAELIREMRSCRFVGDASTIGLVANM 543

Query: 465 L 465
           L
Sbjct: 544 L 544



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 180/384 (46%), Gaps = 15/384 (3%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
            D AI L   +   R + ++    K LS     K F ++            ++ +   M 
Sbjct: 23  LDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVI-----------SLALLGKMM 71

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTN 224
           + G   S+ + +++L+  C  K++  A  L  ++    ++ D I++  + +G  L  + +
Sbjct: 72  KLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKAS 131

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           +A+ ++  MV RG  PNL TY +V+ G  + G I+ A+    +M+  K E DVV + TI+
Sbjct: 132 EAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTII 191

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
                   +  A N+F  M   G+ P+V TY+++I  LC      +A  +  +M+ K   
Sbjct: 192 DSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKIN 251

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           PN  T+N +I      G+   A +    M     +P++ TYN LI  FC    +++  ++
Sbjct: 252 PNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQM 311

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           FE M S  C P+LDTYN LI      K+ +D     +L  EM  RG +    T+  ++ G
Sbjct: 312 FEFMVSKDCFPDLDTYNTLIKGFCKSKRVED---GTELFREMSHRGLVGDTVTYTTLIQG 368

Query: 465 LLLIGNQGLAKEILRLQSRCGRLP 488
           L   G+   A+++ +     G  P
Sbjct: 369 LFHDGDCDNAQKVFKQMVSDGVPP 392



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 136/272 (50%), Gaps = 3/272 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  ID   +   +     L   M   S+ P   T+  +   +    + D+A ++F  M
Sbjct: 256 TFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFM 315

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKR 222
               C   L+++NT++   CK K+VE    LF+    RG    D ++Y  +  G      
Sbjct: 316 VSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRG-LVGDTVTYTTLIQGLFHDGD 374

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
            + A +V K+MV  G+ P++ TY+I+L G    G++E+A   F  M+K + ++D+  YTT
Sbjct: 375 CDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTT 434

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++ G    G++    ++F  +   GV P+V TYN MI  LC K  ++ A  + ++M   G
Sbjct: 435 MIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDG 494

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
            +P+S TYN +IR     G+   + E +  M+
Sbjct: 495 PLPDSGTYNTLIRAHLRDGDKAASAELIREMR 526


>gi|356495784|ref|XP_003516753.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Glycine max]
          Length = 558

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 117/439 (26%), Positives = 215/439 (48%), Gaps = 6/439 (1%)

Query: 53  PRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDL 112
           P   +  L   S   +  LV Q++ R  N  + AL FF        Y HSP  ++  +D+
Sbjct: 111 PELASLALDGLSFQPSSGLVSQVLNRFSNDWVPALGFFKWAKSLTGYRHSPELYNLMVDI 170

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
             + R + ++  LV  M  L    T +T   +  R   A K + A++ F  M + G ++ 
Sbjct: 171 LGKCRSFDSMSELVEEMARLEGYVTLETMTKVMRRLARARKHEDAIEAFGRMEKFGVKKD 230

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
             + N ++D L K   VE A+ +   F+G       S+NV+ +GWC  +  + A + +++
Sbjct: 231 TAALNVLIDALVKGDSVEHAHKVVLEFKGSIPLSSRSFNVLMHGWCRARDFDNARKAMED 290

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M + G  P++ +Y   ++ Y       +  +   EM++  C  + VTYT+++   G  G+
Sbjct: 291 MKEHGFEPDVFSYTNFIEAYGHERDFRKVDQVLEEMRENGCPPNAVTYTSVMLHLGKAGQ 350

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           +++A  V++ M + G +     Y++MI +L K   +++A  VFE+M  +G + +  TYN 
Sbjct: 351 LRKALEVYEKMKSDGCVADTPFYSSMIFILGKAGRLKDACDVFEDMPKQGVVRDVVTYNS 410

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           +I   C     E AL  +  M+D  C+PNV TY+ L++  C    ++    L + M    
Sbjct: 411 MISTACAHSREETALRLLKEMEDGSCKPNVGTYHRLLKMCCKKKRMKVLKFLLDHMFKNN 470

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
             P+L TY++L++++   +KS  +  A   L EMV RGF P+  T  ++   L    ++ 
Sbjct: 471 ISPDLATYSLLVNAL---RKSGKVEDAYSFLEEMVLRGFTPKPSTLKKLAGEL---ESKS 524

Query: 473 LAKEILRLQSRCGRLPRQF 491
           + +E +R++    R  +  
Sbjct: 525 MLEEKVRVEEWMDRFSQNL 543


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 101/343 (29%), Positives = 179/343 (52%), Gaps = 4/343 (1%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            LV RM      P   T+ ++       G  D A  +   M        +  FNTI+D L
Sbjct: 136 ALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSL 195

Query: 184 CKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CK + V+ A NLFK    K  + +V++Y+ + +  C   R + A ++L +M+++ +NPNL
Sbjct: 196 CKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNL 255

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            T+N ++  + + G+  EA +   +M KR  + D+ TY ++++GF +   + +A+ +F+ 
Sbjct: 256 VTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEF 315

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           MV+    P + TYN +I+  CK   VE+   +F EM  +G + ++ TY  +I+GL H G+
Sbjct: 316 MVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGD 375

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
            + A +   +M  D   P++ TY+IL+   C+ G++E+ LE+F+ M       ++  Y  
Sbjct: 376 CDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTT 435

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           +I  M    K DD      L   +  +G  P   T+N +++GL
Sbjct: 436 MIEGMCKAGKVDD---GWDLFCSLSLKGVKPNVVTYNTMISGL 475



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 184/375 (49%), Gaps = 4/375 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           F+  +   A+++ +  V +L  +M+ L +     T+ I+   +    +   A+ +   M 
Sbjct: 13  FNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMM 72

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTN 224
           + G   S+ + +++L+  C  K++  A  L  ++    ++ D I++  + +G  L  + +
Sbjct: 73  KLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKAS 132

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           +A+ ++  MV RG  PNL TY +V+ G  + G I+ A+    +M+  K E DVV + TI+
Sbjct: 133 EAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTII 192

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
                   +  A N+F  M   G+ P+V TY+++I  LC      +A  +  +M+ K   
Sbjct: 193 DSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKIN 252

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           PN  T+N +I      G+   A +    M     +P++ TYN LI  FC    +++  ++
Sbjct: 253 PNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQM 312

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           FE M S  C P+LDTYN LI      K+ +D     +L  EM  RG +    T+  ++ G
Sbjct: 313 FEFMVSKDCFPDLDTYNTLIKGFCKSKRVED---GTELFREMSHRGLVGDTVTYTTLIQG 369

Query: 465 LLLIGNQGLAKEILR 479
           L   G+   A+++ +
Sbjct: 370 LFHDGDCDNAQKVFK 384



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 102/361 (28%), Positives = 171/361 (47%), Gaps = 4/361 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           F+  ID   + R       L   M++  + P   T++ +     S G+   A ++   M 
Sbjct: 188 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 247

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTN 224
           E     +L +FN ++D   KE K  +A  L   + +     D+ +YN + NG+C+  R +
Sbjct: 248 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLD 307

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           KA ++ + MV +   P+L TYN ++KG+ ++ ++E+    F EM  R    D VTYTT++
Sbjct: 308 KAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 367

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            G    G+   A+ VF  MV+ GV P + TY+ ++  LC    +E A+ VF+ M      
Sbjct: 368 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIK 427

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
            +   Y  +I G+C  G+++   +    +     +PNV TYN +I   C    ++    L
Sbjct: 428 LDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYAL 487

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
            +KM     LP+  TYN LI +     +  D   + +L+ EM    F+    T   V N 
Sbjct: 488 LKKMKEDGPLPDSGTYNTLIRAHL---RDGDKAASAELIREMRSCRFVGDASTIGLVANM 544

Query: 465 L 465
           L
Sbjct: 545 L 545



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 136/272 (50%), Gaps = 3/272 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  ID   +   +     L   M   S+ P   T+  +   +    + D+A ++F  M
Sbjct: 257 TFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFM 316

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKR 222
               C   L+++NT++   CK K+VE    LF+    RG    D ++Y  +  G      
Sbjct: 317 VSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRG-LVGDTVTYTTLIQGLFHDGD 375

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
            + A +V K+MV  G+ P++ TY+I+L G    G++E+A   F  M+K + ++D+  YTT
Sbjct: 376 CDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTT 435

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++ G    G++    ++F  +   GV P+V TYN MI  LC K  ++ A  + ++M   G
Sbjct: 436 MIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDG 495

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
            +P+S TYN +IR     G+   + E +  M+
Sbjct: 496 PLPDSGTYNTLIRAHLRDGDKAASAELIREMR 527



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 133/263 (50%), Gaps = 3/263 (1%)

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           +  +N + +    +K+ +  + + ++M   G++ NL TYNI++  + R  QI  A     
Sbjct: 10  IFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLG 69

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           +M K   E  +VT +++++G+     I  A  + D MV  G  P   T+  +I  L   +
Sbjct: 70  KMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHN 129

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
               A+ + + MV +G  PN  TY VV+ GLC  G+++ A   + +M+  + E +V  +N
Sbjct: 130 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFN 189

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            +I   C    ++  L LF++M +    PN+ TY+ LIS +    +  D   A +LL +M
Sbjct: 190 TIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSD---ASQLLSDM 246

Query: 447 VDRGFMPRKFTFNRVLNGLLLIG 469
           +++   P   TFN +++  +  G
Sbjct: 247 IEKKINPNLVTFNALIDAFVKEG 269



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 113/239 (47%), Gaps = 3/239 (1%)

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           P++  +N +L    +  + +       +M++     ++ TY  +++ F    +I  A  +
Sbjct: 8   PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
              M+  G  PS+ T ++++   C    + +A+ + ++MV  GY P++ T+  +I GL  
Sbjct: 68  LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419
             +   A+  V RM    C+PN+ TY +++   C  G+I+    L  KM +     ++  
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVI 187

Query: 420 YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           +N +I S+   +  DD L    L  EM  +G  P   T++ +++ L   G    A ++L
Sbjct: 188 FNTIIDSLCKYRHVDDAL---NLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLL 243



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 3/176 (1%)

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           MV    LPS+  +N ++  + K    +  I + E+M   G   N  TYN++I   C   +
Sbjct: 1   MVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQ 60

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           +  AL  +G+M     EP++ T + L+  +C    I   + L ++M      P+  T+  
Sbjct: 61  ISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTT 120

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           LI  +F+  K+ +   A  L+  MV RG  P   T+  V+NGL   G+  LA  +L
Sbjct: 121 LIHGLFLHNKASE---AVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLL 173


>gi|255579531|ref|XP_002530608.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529856|gb|EEF31788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 596

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/410 (28%), Positives = 204/410 (49%), Gaps = 6/410 (1%)

Query: 71  LVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRM- 129
           L ++++ R  +       FF   S  P Y HS  ++   + + +++R +  VW L+  M 
Sbjct: 108 LTERVLNRCGDAGNLGYRFFVWASKQPGYRHSYENYKAMVKIFSKMRQFGAVWALLEEMR 167

Query: 130 KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV 189
           K  S+  T + F ++  R+ SA   ++A+++   M ++GC      F  +LD LCK   V
Sbjct: 168 KDNSVLITSELFIVLIRRFASARLVEKAIEVLDEMPKYGCEPDEYVFGCLLDALCKNGSV 227

Query: 190 EKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL 249
           ++A +LF+  R +F   +  +  +  GWC   +  +A  VL +M + G  P++  +N +L
Sbjct: 228 KQAASLFEDMRVRFSPSLRHFTSLLYGWCREGKLIEAKHVLVQMREAGFEPDIVVFNNLL 287

Query: 250 KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
             Y  AG++ +A+    EM ++ CE +  +YT ++  F    ++  A  VF  M   G  
Sbjct: 288 SAYSMAGKMTDAFDLLKEMVRKGCEPNANSYTIMIQAFCSQEKMDEAMRVFVEMERTGCE 347

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
             V TY A+I   CK   +     + + M  KG+MPN  TY  ++       E+E  LE 
Sbjct: 348 ADVVTYTALISGFCKWGKINRGYQILDAMKQKGHMPNQLTYLRILLAHEKKEELEECLEL 407

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
           +  M+   C P++  YN++IR  C  GE+++G++++ +M +    P LDT+ I+I     
Sbjct: 408 IESMRMVGCVPDLSIYNVVIRLACKLGEVKQGVQIWNEMEASDFSPELDTFVIMIHGFL- 466

Query: 430 RKKSDDLLVAGKLLIEMVDRGFM--PRKFTFNRVLNGLLLIGNQGLAKEI 477
                 L+ A +   EM+ RG +  P+      +LN LL     G+AK++
Sbjct: 467 --GQGCLVEACEYFKEMIGRGLLTTPQYGILKELLNALLRGEKLGMAKDV 514



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 65/321 (20%), Positives = 124/321 (38%), Gaps = 73/321 (22%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           +M+     P    F  +   Y  AGK   A  +   M   GC  + NS+  ++   C ++
Sbjct: 270 QMREAGFEPDIVVFNNLLSAYSMAGKMTDAFDLLKEMVRKGCEPNANSYTIMIQAFCSQE 329

Query: 188 KVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN----- 241
           K+++A  +F ++ R   +ADV++Y  + +G+C   + N+  ++L  M  +G  PN     
Sbjct: 330 KMDEAMRVFVEMERTGCEADVVTYTALISGFCKWGKINRGYQILDAMKQKGHMPNQLTYL 389

Query: 242 ------------------------------LTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
                                         L+ YN+V++   + G++++  + + EM+  
Sbjct: 390 RILLAHEKKEELEECLELIESMRMVGCVPDLSIYNVVIRLACKLGEVKQGVQIWNEMEAS 449

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL--PSVATYNAMIQVLCKKDSVE 329
               ++ T+  ++HGF   G +  A   F  M+  G+L  P       ++  L + + + 
Sbjct: 450 DFSPELDTFVIMIHGFLGQGCLVEACEYFKEMIGRGLLTTPQYGILKELLNALLRGEKLG 509

Query: 330 NAILVFEEMVGKG-----------------------------------YMPNSTTYNVVI 354
            A  V+  +V KG                                    MP   T+  ++
Sbjct: 510 MAKDVWSCIVTKGCELNADAWTIWIHSLFSNGHVKEACSYCLDMMEADIMPKPETFAKLM 569

Query: 355 RGLCHTGEMERALEFVGRMKD 375
           RGL      E A E   ++KD
Sbjct: 570 RGLRKLYNREFAAEITEKIKD 590



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 5/183 (2%)

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEM-VGKGYMPNSTTYNVVIRGLCHTGEMER 365
           G   S   Y AM+++  K         + EEM      +  S  + V+IR       +E+
Sbjct: 135 GYRHSYENYKAMVKIFSKMRQFGAVWALLEEMRKDNSVLITSELFIVLIRRFASARLVEK 194

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           A+E +  M    CEP+   +  L+   C  G +++   LFE M      P+L  +  L+ 
Sbjct: 195 AIEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKQAASLFEDMRVRFS-PSLRHFTSLLY 253

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
                 K   L+ A  +L++M + GF P    FN +L+   + G    A ++L+   R G
Sbjct: 254 GWCREGK---LIEAKHVLVQMREAGFEPDIVVFNNLLSAYSMAGKMTDAFDLLKEMVRKG 310

Query: 486 RLP 488
             P
Sbjct: 311 CEP 313


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/382 (29%), Positives = 182/382 (47%), Gaps = 4/382 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  +    R    RT   ++  M S  + P + TF  + + +V  G  + A+++   M
Sbjct: 183 TFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARM 242

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV-FRGKFKADVISYNVIANGWCLVKRT 223
            E GC  +  + N +++  CK  +VE A    +      F+ D I+YN   NG C     
Sbjct: 243 LEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHV 302

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
             AL+V+  MV  G +P++ TYNIV+    + GQ+EEA     +M  R C  D+ T+ T+
Sbjct: 303 GHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTL 362

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +        ++ A ++   +   GV P V T+N +I  LCK      A+ +FEEM   G 
Sbjct: 363 IAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGC 422

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+  TYN +I  LC  G++ +AL+ +  M+   C  +  TYN +I   C    IE   E
Sbjct: 423 TPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEE 482

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           +F++M       N  T+N LI  +   KK DD   A  L+ +M+  G  P   T+N +L 
Sbjct: 483 VFDQMDLQGISRNAITFNTLIDGLCKDKKIDD---AFGLINQMISEGLQPNNITYNSILT 539

Query: 464 GLLLIGNQGLAKEILRLQSRCG 485
                G+   A +IL   +  G
Sbjct: 540 HYCKQGDIKKAADILETMTANG 561



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 106/407 (26%), Positives = 191/407 (46%), Gaps = 7/407 (1%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           AL   N       +A  P  ++  I     +     +  LV  M+               
Sbjct: 57  ALRMLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFL 116

Query: 146 ERYVSAGKADRAVKIFLSMHE--HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK- 202
           + Y      D AV + L+  +   G +     +N +L++L +  K++   +++     + 
Sbjct: 117 DSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARG 176

Query: 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262
            K DV+++N +    C   +   A+ +L+EM  RG+ P+ TT+  +++G+   G IE A 
Sbjct: 177 IKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAAL 236

Query: 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322
           R    M +  C    VT   +++G+  +G ++ A       +  G  P   TYN  +  L
Sbjct: 237 RVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGL 296

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
           C+ D V +A+ V + MV +G+ P+  TYN+V+  LC  G++E A   + +M D  C P++
Sbjct: 297 CQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDI 356

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
            T+N LI   C    +E  L+L  ++      P++ T+NILI+++    K  D  +A +L
Sbjct: 357 TTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALC---KVGDPHLALRL 413

Query: 443 LIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPR 489
             EM + G  P + T+N +++ L  +G  G A ++L+     G  PR
Sbjct: 414 FEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG-CPR 459



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 121/448 (27%), Positives = 191/448 (42%), Gaps = 27/448 (6%)

Query: 34  PPAAADPAALASLILTSTDP----RTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHF 89
           P  AA    L + +    DP    R L   L        P++ ++II++L   A+ AL  
Sbjct: 35  PLRAAGQEQLLTALREQPDPDAALRMLNAALARDDFAPGPEVYEEIIRKLG--AVGALDL 92

Query: 90  FNILSYHPTYAHSPSSFDHAIDLAA--RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
             +L              H + L       D      L      L L   Q  F I A+ 
Sbjct: 93  MKVL------VAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADT 146

Query: 148 YV---------SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV 198
            V            K      ++  M   G +  + +FNT++  LC+  +V  A  + + 
Sbjct: 147 VVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEE 206

Query: 199 FRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
              +  A D  ++  +  G+        AL V   M++ G +    T N+++ GY + G+
Sbjct: 207 MSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGR 266

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           +E+A  +  +      E D +TY T V+G      +  A  V D MV  G  P V TYN 
Sbjct: 267 VEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNI 326

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           ++  LCK   +E A  +  +MV +G +P+ TT+N +I  LC    +E AL+   ++    
Sbjct: 327 VVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKG 386

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
             P+V T+NILI   C  G+    L LFE+M +  C P+  TYN LI ++    K   L 
Sbjct: 387 VSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGK---LG 443

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            A  LL +M   G      T+N +++GL
Sbjct: 444 KALDLLKDMESTGCPRSTITYNTIIDGL 471



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 163/370 (44%), Gaps = 38/370 (10%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+ I+       G+ + A  I   M + GC   + +FNT++  LC   ++E+A +L
Sbjct: 319 PDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDL 378

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            +    K    DV ++N++ N  C V   + AL + +EM + G  P+  TYN ++     
Sbjct: 379 ARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCS 438

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G++ +A     +M+   C    +TY TI+ G      I+ A  VFD M   G+  +  T
Sbjct: 439 LGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAIT 498

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV--------------------- 353
           +N +I  LCK   +++A  +  +M+ +G  PN+ TYN +                     
Sbjct: 499 FNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMT 558

Query: 354 --------------IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
                         I GLC  G  + AL+ +  M+     P  + YN +++       I 
Sbjct: 559 ANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIR 618

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
             L LF +M      P+  TY I+   +   +    +  A   ++EMVD+GF+P   +F 
Sbjct: 619 DALSLFREMAEVGEPPDALTYKIVFRGLC--RGGGPIKEAFDFMLEMVDKGFIPEFSSFR 676

Query: 460 RVLNGLLLIG 469
            +  GLL +G
Sbjct: 677 MLAEGLLNLG 686



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 38/218 (17%)

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
           + D V Y  +++      ++K   +V+  M   G+ P V T+N +++ LC+   V  A+L
Sbjct: 143 QADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVL 202

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           + EEM  +G  P+ TT+  +++G    G +E AL    RM +  C     T N+LI  +C
Sbjct: 203 MLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYC 262

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
             G +E  L                                     G +  E+ D GF P
Sbjct: 263 KLGRVEDAL-------------------------------------GYIQQEIAD-GFEP 284

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
            + T+N  +NGL    + G A +++ +  + G  P  F
Sbjct: 285 DQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVF 322


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/382 (29%), Positives = 183/382 (47%), Gaps = 4/382 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  +    R    RT   ++  M S  + P + TF  + + +V  G  + A+++   M
Sbjct: 91  TFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARM 150

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV-FRGKFKADVISYNVIANGWCLVKRT 223
            E GC  +  + N +++  CK  +VE A    +      F+ D I+YN   NG C     
Sbjct: 151 LEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHV 210

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
             AL+V+  MV  G +P++ TYNIV+    + GQ+EEA     +M  R C  D+ T+ T+
Sbjct: 211 GHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTL 270

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +        ++ A ++   +   GV P V T+N +I  LCK      A+ +FEEM   G 
Sbjct: 271 IAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGC 330

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+  TYN +I  LC  G++ +AL+ +  M+   C  +  TYN +I   C    IE   E
Sbjct: 331 TPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEE 390

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           +F++M       N  T+N LI  +   KK DD   A +L+ +M+  G  P   T+N +L 
Sbjct: 391 VFDQMDLQGISRNAITFNTLIDGLCKDKKIDD---AFELINQMISEGLQPNNITYNSILT 447

Query: 464 GLLLIGNQGLAKEILRLQSRCG 485
                G+   A +IL   +  G
Sbjct: 448 HYCKQGDIKKAADILETMTANG 469



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 174/338 (51%), Gaps = 7/338 (2%)

Query: 155 DRAVKIFLSMHE--HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYN 211
           D AV + L+  +   G +     +N +L++L +  K++   +++     +  K DV+++N
Sbjct: 34  DDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFN 93

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
            +    C   +   A+ +L+EM  RG+ P+ TT+  +++G+   G IE A R    M + 
Sbjct: 94  TLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEM 153

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
            C    VT   +++G+  +G ++ A       +  G  P   TYN  +  LC+ D V +A
Sbjct: 154 GCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHA 213

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
           + V + MV +G+ P+  TYN+V+  LC  G++E A   + +M D  C P++ T+N LI  
Sbjct: 214 LKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAA 273

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
            C    +E  L+L  ++      P++ T+NILI+++    K  D  +A +L  EM + G 
Sbjct: 274 LCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALC---KVGDPHLALRLFEEMKNSGC 330

Query: 452 MPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPR 489
            P + T+N +++ L  +G  G A ++L+     G  PR
Sbjct: 331 TPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG-CPR 367



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 170/341 (49%), Gaps = 3/341 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  I+   ++ D      L   MK+    P + T+  + +   S GK  +A+ +   M
Sbjct: 301 TFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDM 360

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
              GC +S  ++NTI+D LCK+ ++E+A  +F     +    + I++N + +G C  K+ 
Sbjct: 361 ESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKI 420

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A E++ +M+  GL PN  TYN +L  Y + G I++A      M     E+DVVTY T+
Sbjct: 421 DDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTL 480

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++G    G  + A  V  GM   G+ P+   YN ++Q L +++++ +A+ +F EM   G 
Sbjct: 481 INGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGE 540

Query: 344 MPNSTTYNVVIRGLCH-TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
            P++ TY +V RGLC   G ++ A +F+  M D    P   ++ +L     + G  +  +
Sbjct: 541 PPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFI 600

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
              E +   V L   D   I    + +RK  D L   G+ L
Sbjct: 601 RAIEIIMEKVDLRESDVSAIR-GYLKIRKFYDALATFGRFL 640



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 167/368 (45%), Gaps = 34/368 (9%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+ I+       G+ + A  I   M + GC   + +FNT++  LC   ++E+A +L
Sbjct: 227 PDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDL 286

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            +    K    DV ++N++ N  C V   + AL + +EM + G  P+  TYN ++     
Sbjct: 287 ARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCS 346

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G++ +A     +M+   C    +TY TI+ G      I+ A  VFD M   G+  +  T
Sbjct: 347 LGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAIT 406

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           +N +I  LCK   +++A  +  +M+ +G  PN+ TYN ++   C  G++++A + +  M 
Sbjct: 407 FNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMT 466

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
            +  E +V TY  LI   C AG  +  L++   M      P    YN ++ S+F R    
Sbjct: 467 ANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIR 526

Query: 435 DLLV---------------------------------AGKLLIEMVDRGFMPRKFTFNRV 461
           D L                                  A   ++EMVD+GF+P   +F  +
Sbjct: 527 DALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRML 586

Query: 462 LNGLLLIG 469
             GLL +G
Sbjct: 587 AEGLLNLG 594



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 152/318 (47%), Gaps = 4/318 (1%)

Query: 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DV 207
           V   K      ++  M   G +  + +FNT++  LC+  +V  A  + +    +  A D 
Sbjct: 65  VEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDE 124

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
            ++  +  G+        AL V   M++ G +    T N+++ GY + G++E+A  +  +
Sbjct: 125 TTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQ 184

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
                 E D +TY T V+G      +  A  V D MV  G  P V TYN ++  LCK   
Sbjct: 185 EIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQ 244

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
           +E A  +  +MV +G +P+ TT+N +I  LC    +E AL+   ++      P+V T+NI
Sbjct: 245 LEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNI 304

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           LI   C  G+    L LFE+M +  C P+  TYN LI ++    K   L  A  LL +M 
Sbjct: 305 LINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGK---LGKALDLLKDME 361

Query: 448 DRGFMPRKFTFNRVLNGL 465
             G      T+N +++GL
Sbjct: 362 STGCPRSTITYNTIIDGL 379



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 38/218 (17%)

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
           + D V Y  +++      ++K   +V+  M   G+ P V T+N +++ LC+   V  A+L
Sbjct: 51  QADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVL 110

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           + EEM  +G  P+ TT+  +++G    G +E AL    RM +  C     T N+LI  +C
Sbjct: 111 MLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYC 170

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
             G +E  L                                     G +  E+ D GF P
Sbjct: 171 KLGRVEDAL-------------------------------------GYIQQEIAD-GFEP 192

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
            + T+N  +NGL    + G A +++ +  + G  P  F
Sbjct: 193 DQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVF 230


>gi|147821100|emb|CAN70963.1| hypothetical protein VITISV_038268 [Vitis vinifera]
          Length = 844

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 135/476 (28%), Positives = 229/476 (48%), Gaps = 18/476 (3%)

Query: 13  LHFFCIYRGLSPLTTTSPAPLPPAAADPAA--LASLILTSTDPRTLTQTLHCPSLHW--- 67
           LHF  I   +   +T   A + P    P+   LA++   ST  ++ T T   P   W   
Sbjct: 42  LHFHSI-SAVRSASTAVGAAVDPFTDHPSHHHLAAVDSKSTLLKSYTVTP--PIKPWPQR 98

Query: 68  -TPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLV 126
            +P+ V  +I R  N  L    F +   +H  +AH+  ++   I+  ++ R +  + TL+
Sbjct: 99  LSPKRVVSMISRQQNLDLALQIFDHAGKFHRNFAHNYETYLAMIEKLSKARAFEPMETLI 158

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186
            ++    +   +  F  +   Y  AG+   A++ FL +   G + S+ SFNT+L+ L + 
Sbjct: 159 SQLHKSQIKCGENLFITVIRNYGFAGRPKLAIRTFLRIPSFGLQPSVRSFNTLLNTLVQN 218

Query: 187 KKVEKAYNLFKVFRGKFK--ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
           K+ +  + +FK  R KF    +V + N++    C     + A+ VL+EM   G  PN+ T
Sbjct: 219 KRFDLVHLMFKNCRKKFGIVPNVFTCNILVKALCKKNDIDAAIRVLEEMPAMGFIPNVVT 278

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           Y  +L GY   G +  A R F E+  R    D  TYT ++ G+   G    A  V D M 
Sbjct: 279 YTTILGGYVSKGDMVGARRVFGEILDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEME 338

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
              V P+  TY  +I+  CK+      + + ++M+ K Y+P+S     VI  LC  G++E
Sbjct: 339 ENRVEPNDVTYGVIIEAYCKEKKSGEVLNLLDDMLEKKYIPSSALCCRVIDMLCEEGKVE 398

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
            A E   ++    C P+    + LI + C  G++    +LF++   G  +P+  TYN LI
Sbjct: 399 VACELWKKLLKKNCTPDNAITSTLIHWLCKEGKVWEARKLFDEFEKG-SIPSTLTYNALI 457

Query: 425 SSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           + M    +  +L  A +L   MV++G +P  FT+N ++ G   +GN   A+E +R+
Sbjct: 458 AGMC---EGGELPEAARLWDNMVEKGCVPNAFTYNMLIKGFCKVGN---AREGIRV 507



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 132/271 (48%), Gaps = 2/271 (0%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177
           D      ++  M ++   P   T+  I   YVS G    A ++F  + + G      ++ 
Sbjct: 256 DIDAAIRVLEEMPAMGFIPNVVTYTTILGGYVSKGDMVGARRVFGEILDRGWVPDPTTYT 315

Query: 178 TILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
            ++D  CK+ +   A  +  ++   + + + ++Y VI   +C  K++ + L +L +M+++
Sbjct: 316 ILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGVIIEAYCKEKKSGEVLNLLDDMLEK 375

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
              P+      V+      G++E A   + ++ K+ C  D    +T++H     G++  A
Sbjct: 376 KYIPSSALCCRVIDMLCEEGKVEVACELWKKLLKKNCTPDNAITSTLIHWLCKEGKVWEA 435

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
           R +FD    G + PS  TYNA+I  +C+   +  A  +++ MV KG +PN+ TYN++I+G
Sbjct: 436 RKLFDEFEKGSI-PSTLTYNALIAGMCEGGELPEAARLWDNMVEKGCVPNAFTYNMLIKG 494

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
            C  G     +  +  M D+ C PN  TY I
Sbjct: 495 FCKVGNAREGIRVMEEMLDNGCLPNKATYAI 525



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 79/180 (43%), Gaps = 2/180 (1%)

Query: 103 PSSFDHAIDLAARLRDYRT--VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P+   + + + A  ++ ++  V  L+  M      P+      + +     GK + A ++
Sbjct: 344 PNDVTYGVIIEAYCKEKKSGEVLNLLDDMLEKKYIPSSALCCRVIDMLCEEGKVEVACEL 403

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV 220
           +  + +  C       +T++  LCKE KV +A  LF  F        ++YN +  G C  
Sbjct: 404 WKKLLKKNCTPDNAITSTLIHWLCKEGKVWEARKLFDEFEKGSIPSTLTYNALIAGMCEG 463

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
               +A  +   MV++G  PN  TYN+++KG+ + G   E  R   EM    C  +  TY
Sbjct: 464 GELPEAARLWDNMVEKGCVPNAFTYNMLIKGFCKVGNAREGIRVMEEMLDNGCLPNKATY 523


>gi|224068054|ref|XP_002302657.1| predicted protein [Populus trichocarpa]
 gi|222844383|gb|EEE81930.1| predicted protein [Populus trichocarpa]
          Length = 602

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 112/410 (27%), Positives = 206/410 (50%), Gaps = 6/410 (1%)

Query: 71  LVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMK 130
           L ++++ R  +  + A  FF   S  P Y H   ++   I + ++++ +  VW L+  M+
Sbjct: 83  LTERVLNRCGDAGILAYKFFVWASKQPCYRHCYENYKAMIKVLSKMKQFGAVWALLEEMR 142

Query: 131 -SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV 189
              S+  T + F ++  R+ S+   ++A+++   M ++GC      F  +LD LCK   V
Sbjct: 143 RDNSVLITSEVFVVVMRRFASSRMVNKAIEVLDEMPKYGCEPDEYVFGCLLDALCKNGSV 202

Query: 190 EKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL 249
           ++A +LF+  R +F   +  +  +  GWC   +  +A  VL +M + G  P++  YN +L
Sbjct: 203 KEAASLFEDMRVRFSPSLKHFTCLLYGWCKEGKLLEAKHVLVQMREAGFEPDIVVYNNLL 262

Query: 250 KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
            GY  AG++ +A+    E++++ C+ +  +YT ++       ++  A  VF  M   G  
Sbjct: 263 SGYATAGKMGDAFDLLKEIRRKGCDPNATSYTILIQALCGQEKMDEAMRVFVEMERSGCD 322

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
             V TY A++   CK   ++    + + M+ KG+MPN  TY  ++       E+E   E 
Sbjct: 323 ADVVTYTALVSGFCKWRMIDKGYQILQSMIQKGHMPNQLTYLHLMLAHEKKEELEECKEL 382

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
           +G M+   C P++  YN++IR  C  GE+  G++ + +M      P LDT+ I+I+    
Sbjct: 383 MGEMQKIGCIPDLSIYNVVIRLACKLGEVNAGVDAWNEMEVSGLSPGLDTFVIMINGFL- 441

Query: 430 RKKSDDLLVAGKLLIEMVDRGFM-PRKF-TFNRVLNGLLLIGNQGLAKEI 477
                 L+ A +   EMV+RG +  R++     +LN LL      LAK++
Sbjct: 442 --GHGYLVEACQYFKEMVERGLLSSRQYGILKDLLNALLRGEKLELAKDL 489



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/308 (19%), Positives = 121/308 (39%), Gaps = 57/308 (18%)

Query: 89  FFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERY 148
           + N+LS + T      +FD                 L+  ++     P   ++ I+ +  
Sbjct: 258 YNNLLSGYATAGKMGDAFD-----------------LLKEIRRKGCDPNATSYTILIQAL 300

Query: 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--------- 199
               K D A+++F+ M   GC   + ++  ++   CK + ++K Y + +           
Sbjct: 301 CGQEKMDEAMRVFVEMERSGCDADVVTYTALVSGFCKWRMIDKGYQILQSMIQKGHMPNQ 360

Query: 200 ----------------------RGKFKA-----DVISYNVIANGWCLVKRTNKALEVLKE 232
                                  G+ +      D+  YNV+    C +   N  ++   E
Sbjct: 361 LTYLHLMLAHEKKEELEECKELMGEMQKIGCIPDLSIYNVVIRLACKLGEVNAGVDAWNE 420

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV-- 290
           M   GL+P L T+ I++ G+   G + EA ++F EM +R   +    Y  +      +  
Sbjct: 421 MEVSGLSPGLDTFVIMINGFLGHGYLVEACQYFKEMVERGL-LSSRQYGILKDLLNALLR 479

Query: 291 GE-IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
           GE ++ A++++  +V  G   +V ++   I  L     V+ A     +M+    MP   T
Sbjct: 480 GEKLELAKDLWSCIVTKGCELNVDSWTIWIHALFSNGHVKEACSYCLDMMDADLMPKPET 539

Query: 350 YNVVIRGL 357
           +  ++RGL
Sbjct: 540 FAKLMRGL 547



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 77/176 (43%), Gaps = 5/176 (2%)

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMV-GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            Y AMI+VL K         + EEM      +  S  + VV+R    +  + +A+E +  
Sbjct: 117 NYKAMIKVLSKMKQFGAVWALLEEMRRDNSVLITSEVFVVVMRRFASSRMVNKAIEVLDE 176

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           M    CEP+   +  L+   C  G ++    LFE M      P+L  +  L+       K
Sbjct: 177 MPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRVRFS-PSLKHFTCLLYGWC---K 232

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
              LL A  +L++M + GF P    +N +L+G    G  G A ++L+   R G  P
Sbjct: 233 EGKLLEAKHVLVQMREAGFEPDIVVYNNLLSGYATAGKMGDAFDLLKEIRRKGCDP 288


>gi|15219049|ref|NP_175673.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207559|sp|Q9SSR6.1|PPR78_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g52640, mitochondrial; Flags: Precursor
 gi|5903042|gb|AAD55601.1|AC008016_11 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
 gi|45773940|gb|AAS76774.1| At1g52640 [Arabidopsis thaliana]
 gi|62320530|dbj|BAD95108.1| hypothetical protein [Arabidopsis thaliana]
 gi|332194712|gb|AEE32833.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/443 (26%), Positives = 210/443 (47%), Gaps = 5/443 (1%)

Query: 34  PPAAADPAALASLILTSTDPRT-LTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNI 92
           PP+      ++ ++    +P+  L  TL   S   +  LV+Q++KR  N    A  FF  
Sbjct: 32  PPSPDLVNEISRVLSDHRNPKDDLEHTLVAYSPRVSSNLVEQVLKRCKNLGFPAHRFFLW 91

Query: 93  LSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLS-LGPTQKTFAIIAERYVSA 151
               P +AHS  S+   +++    + +  +W  +   +  +    + K F I+   Y  A
Sbjct: 92  ARRIPDFAHSLESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRA 151

Query: 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISY 210
                A + F  M E G +  ++  + +L  LC +K V  A   F   +G        +Y
Sbjct: 152 NLPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVPSAKTY 211

Query: 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
           +++  GW  ++  + A +V  EM++R    +L  YN +L    ++G ++  ++ F EM  
Sbjct: 212 SILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGN 271

Query: 271 RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
              + D  ++   +H +   G++  A  V D M    ++P+V T+N +I+ LCK + V++
Sbjct: 272 LGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDD 331

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           A L+ +EM+ KG  P++ TYN ++   C   E+ RA + + RM   +C P+  TYN++++
Sbjct: 332 AYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLK 391

Query: 391 YFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450
                G  +R  E++E M      P + TY ++I  + VRKK   L  A +    M+D G
Sbjct: 392 LLIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGL-VRKKG-KLEEACRYFEMMIDEG 449

Query: 451 FMPRKFTFNRVLNGLLLIGNQGL 473
             P   T   + N L+  G   +
Sbjct: 450 IPPYSTTVEMLRNRLVGWGQMDV 472



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 123/284 (43%), Gaps = 37/284 (13%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           + K   + P+ KT++I+   +     A  A K+F  M E  C   L ++N +LD LCK  
Sbjct: 198 KAKGFGIVPSAKTYSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSG 257

Query: 188 KVEKAYNLFK---------------VF---------------------RGKFKADVISYN 211
            V+  Y +F+               +F                     R     +V ++N
Sbjct: 258 DVDGGYKMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFN 317

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
            I    C  ++ + A  +L EM+ +G NP+  TYN ++  +    ++  A +    M + 
Sbjct: 318 HIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRT 377

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC-KKDSVEN 330
           KC  D  TY  ++     +G   RA  +++GM      P+VATY  MI  L  KK  +E 
Sbjct: 378 KCLPDRHTYNMVLKLLIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEE 437

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           A   FE M+ +G  P STT  ++   L   G+M+      G+M+
Sbjct: 438 ACRYFEMMIDEGIPPYSTTVEMLRNRLVGWGQMDVVDVLAGKME 481



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 138/309 (44%), Gaps = 5/309 (1%)

Query: 171 QSLNSFNTILDLLCKEKKVEKAYNLFKVFR--GKFKADVISYNVIANGWCLVKRTNKALE 228
            SL S++ ++++L   K+    ++     R    F+     + ++   +      ++A  
Sbjct: 100 HSLESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRANLPSEACR 159

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
               MV+ G+ P +   + +L        +  A  FF + K         TY+ +V G+ 
Sbjct: 160 AFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVPSAKTYSILVRGWA 219

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
            + +   AR VFD M+    +  +  YNA++  LCK   V+    +F+EM   G  P++ 
Sbjct: 220 RIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAY 279

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           ++ + I   C  G++  A + + RMK  +  PNV T+N +I+  C   +++    L ++M
Sbjct: 280 SFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEM 339

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
                 P+  TYN   S M       ++  A KLL  M     +P + T+N VL  L+ I
Sbjct: 340 IQKGANPDTWTYN---SIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRI 396

Query: 469 GNQGLAKEI 477
           G    A EI
Sbjct: 397 GRFDRATEI 405


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/347 (30%), Positives = 178/347 (51%), Gaps = 4/347 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           ++  ID   +++     + L   M S  + P   T+  +   +   GK   A  +F  M 
Sbjct: 215 YNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMI 274

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTN 224
                 ++ +FN ++D  CKE+++++A N+  +  +   K DV +YN + + +CLVK  N
Sbjct: 275 FENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVN 334

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           KA  +   +  RG+NPN+ +Y+I++ G+ +  +++EA   F EM       DVVTY +++
Sbjct: 335 KAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLI 394

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            G   +G+I  A  + D M + GV     TYN+++  LCK   V+ AI +  +M  +G  
Sbjct: 395 DGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQ 454

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           P+  TY  ++ GLC  G +E A      +       +V  Y  +I+ FC  G  +  L+L
Sbjct: 455 PDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDL 514

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
             KM    C+PN  TY I+I S+F + ++D    A KLL EM+ RG 
Sbjct: 515 LSKMEENGCIPNAVTYEIIICSLFDKDENDK---AEKLLREMITRGL 558



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 97/366 (26%), Positives = 184/366 (50%), Gaps = 6/366 (1%)

Query: 103 PSSFDHAIDLAARLRD--YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           PS F     L + ++   Y TV +L  +M+   +       +I+   +   G+   +  +
Sbjct: 70  PSIFQFGKILGSLVKSNHYSTVVSLHRQMEFNGITSDLVILSILINCFSQLGQNPLSFSV 129

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCL 219
              + + G   ++ +  T++  LC + ++ +A     KV    F  + +SY  + NG C 
Sbjct: 130 LAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCK 189

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
           V +T+ AL++L+ +  + + PN+  YN ++    +   + EA+  + EM  +    DVVT
Sbjct: 190 VGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVT 249

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y  ++ GF +VG++K A ++F+ M+   + P+V T+N ++   CK+  ++ A  V   M+
Sbjct: 250 YNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMM 309

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            +G  P+  TYN ++   C   E+ +A      +      PN+ +Y+I+I  FC   +++
Sbjct: 310 KQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVD 369

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
             + LF++M     +P++ TYN LI  +    K   +  A KL+ EM DRG    K T+N
Sbjct: 370 EAMNLFKEMHCNNIIPDVVTYNSLIDGLC---KLGKISYALKLVDEMHDRGVPHDKITYN 426

Query: 460 RVLNGL 465
            +L+ L
Sbjct: 427 SILDAL 432



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 190/394 (48%), Gaps = 9/394 (2%)

Query: 78  RLWNHALKALHFFNILSYHPTYAHSPSSFDHAI-----DLAARLRDYRTVWTLVHRMKSL 132
           ++    +K+ H+  ++S H     +  + D  I     +  ++L      ++++ ++  +
Sbjct: 77  KILGSLVKSNHYSTVVSLHRQMEFNGITSDLVILSILINCFSQLGQNPLSFSVLAKILKM 136

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
              P   T   + +     G+  +A++    +   G   +  S+ T+++ LCK  +   A
Sbjct: 137 GYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAA 196

Query: 193 YNLFKVFRGKF-KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
             L +   GK  + +V+ YN I +  C VK  N+A ++  EMV +G++P++ TYN ++ G
Sbjct: 197 LQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISG 256

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
           +   G++++A   F +M       +V T+  +V GF     +K A+NV   M+  G+ P 
Sbjct: 257 FCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPD 316

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
           V TYN+++   C    V  A  +F  +  +G  PN  +Y+++I G C   +++ A+    
Sbjct: 317 VFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFK 376

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
            M  +   P+V TYN LI   C  G+I   L+L ++M       +  TYN ++ ++    
Sbjct: 377 EMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNH 436

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           + D    A  LL +M D G  P   T+  +++GL
Sbjct: 437 QVDK---AIALLTKMKDEGIQPDICTYTTLVDGL 467



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 137/275 (49%), Gaps = 3/275 (1%)

Query: 195 LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           L K+ +  ++ +VI+   +  G CL  + ++AL+   ++V  G + N  +Y  ++ G  +
Sbjct: 130 LAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCK 189

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            GQ   A +    +  +  + +VV Y TI+     V  +  A +++  MV+ G+ P V T
Sbjct: 190 VGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVT 249

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YNA+I   C    +++A  +F +M+ +   PN  T+N+++ G C    ++ A   +  M 
Sbjct: 250 YNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMM 309

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
               +P+V TYN L+  +C   E+ +   +F  +      PN+ +Y+I+I      KK D
Sbjct: 310 KQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVD 369

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
           +   A  L  EM     +P   T+N +++GL  +G
Sbjct: 370 E---AMNLFKEMHCNNIIPDVVTYNSLIDGLCKLG 401



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 116/239 (48%), Gaps = 1/239 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  +D    +++      + + +    + P   +++I+   +    K D A+ +F  M
Sbjct: 319 TYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEM 378

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
           H +     + ++N+++D LCK  K+  A  L      +    D I+YN I +  C   + 
Sbjct: 379 HCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQV 438

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           +KA+ +L +M D G+ P++ TY  ++ G  + G++E+A   F ++  +   +DV  YT +
Sbjct: 439 DKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAM 498

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           + GF   G    + ++   M   G +P+  TY  +I  L  KD  + A  +  EM+ +G
Sbjct: 499 IQGFCSHGLFDESLDLLSKMEENGCIPNAVTYEIIICSLFDKDENDKAEKLLREMITRG 557



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 3/146 (2%)

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           V  +++  GY PN  T   +I+GLC  G++ +AL+F  ++       N  +Y  LI   C
Sbjct: 129 VLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLC 188

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
             G+    L+L  ++   +  PN+  YN +I SM   K  ++   A  L  EMV +G  P
Sbjct: 189 KVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNE---AFDLYSEMVSKGISP 245

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILR 479
              T+N +++G  ++G    A ++  
Sbjct: 246 DVVTYNALISGFCIVGKMKDATDLFN 271


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 112/396 (28%), Positives = 187/396 (47%), Gaps = 9/396 (2%)

Query: 96  HPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKAD 155
           H   A +  ++   +D   +         LV  M      PT  T+  I   +  A + D
Sbjct: 102 HRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVD 161

Query: 156 RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIA 214
            A      M   GC   + ++  ++   CK + V +   L  +V R  F  D+++Y+ + 
Sbjct: 162 EAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVI 221

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
           +G C   R   A+++ +EM      P   TYN ++ GY RAG ++EA R   +M   KC 
Sbjct: 222 DGLCKAGRLRDAVDIFEEM---SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCA 278

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
            DVVTYTT++  F  +G +  A  +F  MV   + P V T+ +++  LC +  +E+A+ +
Sbjct: 279 PDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALEL 338

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
            EE+  +G  P   TYN V+ G C   ++ +A E V   +     PN  TYNIL+   C 
Sbjct: 339 LEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCR 398

Query: 395 AGEIERGLELFEKMGS--GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
           AG  ++ L+  +++ S  G C  ++  Y I++ ++    ++DD   A +   EM+ RG++
Sbjct: 399 AGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDD---AVQFYEEMIQRGYV 455

Query: 453 PRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           P   TF  V+  L        A E+L    + G  P
Sbjct: 456 PAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTP 491



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 150/299 (50%), Gaps = 9/299 (3%)

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
           A RLRD   ++      + +S  PT  T+  +   Y  AG  D A+++   M +  C   
Sbjct: 227 AGRLRDAVDIF------EEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPD 280

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLK 231
           + ++ T++   CK  +++ AY LF+ +   K   DV+++  + +G C   R   ALE+L+
Sbjct: 281 VVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLE 340

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
           E+  RG  P + TYN V+ GY +A Q+ +A     + + R    + VTY  +V G    G
Sbjct: 341 EITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAG 400

Query: 292 EIKRARNVFDGM-VNGGVLP-SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
              +A    D +   GG  P SVA Y  ++  LC+    ++A+  +EEM+ +GY+P + T
Sbjct: 401 RTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAAT 460

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           +  V+  LC   + ++A E +  M      P   T + ++  +C AG I++  EL  ++
Sbjct: 461 FATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASEL 519



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 147/303 (48%), Gaps = 6/303 (1%)

Query: 177 NTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
           N ++  LC+  ++  A  +++        D ++Y  + +G    +R   A++VL+EMV  
Sbjct: 9   NVVIGGLCRAGRLRHALGVYRQMNDAHPPDFLTYTKLVHGLSKARRLRDAVQVLQEMVSA 68

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
              P+ TT  +V++      ++++A     EM  R    + +TY+ +V G      +  A
Sbjct: 69  RHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEA 128

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
             + + M   G  P+V TYN++I   C+   V+ A    E+MV +G  P+  TY  +I G
Sbjct: 129 VALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGG 188

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
            C + ++ R LE +G +      P++ TY+ +I   C AG +   +++FE+M    C P 
Sbjct: 189 FCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS---CAPT 245

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKE 476
             TYN LI       ++ D+  A +LL +MVD    P   T+  +++    +G    A E
Sbjct: 246 AITYNSLIGGYC---RAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYE 302

Query: 477 ILR 479
           + +
Sbjct: 303 LFQ 305



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 118/232 (50%), Gaps = 4/232 (1%)

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
           +NP    +N+V+ G  RAG++  A   + +M       D +TYT +VHG      ++ A 
Sbjct: 1   MNPGTLLHNVVIGGLCRAGRLRHALGVYRQMNDAH-PPDFLTYTKLVHGLSKARRLRDAV 59

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
            V   MV+   +P   T   ++Q LC  D V++A  + EEM+ +G   N+ TY+ ++ GL
Sbjct: 60  QVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGL 119

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
           C    ++ A+  V  M +  C P V TYN +I  FC A  ++      E+M +  C P++
Sbjct: 120 CKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDI 179

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
            TY  LI       KS D+    +LL E+  RGF P   T++ V++GL   G
Sbjct: 180 ITYTALIGGFC---KSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAG 228



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 131/269 (48%), Gaps = 7/269 (2%)

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           +NV+  G C   R   AL V ++M D    P+  TY  ++ G  +A ++ +A +   EM 
Sbjct: 8   HNVVIGGLCRAGRLRHALGVYRQMND-AHPPDFLTYTKLVHGLSKARRLRDAVQVLQEMV 66

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
             +   D  T T +V    +   +  AR + + M++ G+  +  TY+A++  LCK + ++
Sbjct: 67  SARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLD 126

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
            A+ + E M  +G  P   TYN +I G C    ++ A  F+ +M  + C P++ TY  LI
Sbjct: 127 EAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALI 186

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
             FC + ++ RGLEL  ++      P++ TY+ +I  +    K+  L  A  +  EM   
Sbjct: 187 GGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLC---KAGRLRDAVDIFEEM--- 240

Query: 450 GFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
              P   T+N ++ G    G+   A  +L
Sbjct: 241 SCAPTAITYNSLIGGYCRAGDMDEAIRLL 269


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 111/349 (31%), Positives = 179/349 (51%), Gaps = 7/349 (2%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           R  + R +  ++   +  S  P   ++ I+   + + G+ D+A  +FL M   G    + 
Sbjct: 170 RAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSLFLEM---GVSPDVV 226

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           ++NTI+D LCK ++V++A ++F+    K  K + ++YN I +G C  +  + A  V ++M
Sbjct: 227 TYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKM 286

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           VD+G+ P+  TYN ++ G  +A  ++ A   F +M  R  + D VTY TI+ G      I
Sbjct: 287 VDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAI 346

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
            +A  VF  M++ GV P   TY  +I  LCK  SV+ A  VF++M+ KG  PN+ TYN +
Sbjct: 347 DKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCL 406

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           I G   TG+ E  ++ +  M   + EP+V TY +L+ Y C  G+      LF+ M     
Sbjct: 407 IHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGI 466

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
            P++  Y I++       K   L     LL  MV  G  P    FN V+
Sbjct: 467 KPSVTIYGIMLHGY---GKKGALSEMHDLLNLMVANGISPNHRIFNTVI 512



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 122/395 (30%), Positives = 197/395 (49%), Gaps = 18/395 (4%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSL------SLGPTQK 139
           AL  F+ L  H   A S  + +  + + +R +   +    V R   +       + P   
Sbjct: 27  ALKLFDELLLHARPA-SVRALNQLLSVVSRAKCSSSSKLAVSRFNRMLRDCSNKVAPDCC 85

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF--K 197
           T++I+   +   G+ +     F  + + G R      N +L  LC  K+V +A ++   +
Sbjct: 86  TYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVGEAMHVLLRQ 145

Query: 198 VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV---DRGLNPNLTTYNIVLKGYFR 254
           +     +  V+SYN +  G C  +R  +A E+L  MV   D   +P++ +YNIV+ G+F 
Sbjct: 146 MPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFN 205

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            GQ+++A+  FLEM       DVVTY TI+ G     E+ RA +VF  MV  GV P+  T
Sbjct: 206 EGQVDKAYSLFLEMGVSP---DVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVT 262

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN +I  LCK   V+ A  VF++MV KG  P++ TYN +I GLC    ++RA     +M 
Sbjct: 263 YNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMI 322

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
           D   +P+  TYN +I   C A  I++   +F++M      P+  TY I+I  +   +  D
Sbjct: 323 DRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVD 382

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
               A  +  +M+D+G  P   T+N +++G L  G
Sbjct: 383 R---AEGVFQQMIDKGVKPNNGTYNCLIHGYLSTG 414



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 171/327 (52%), Gaps = 8/327 (2%)

Query: 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISY 210
           A +A   + + +   +  C   + S+N +++    E +V+KAY+LF         DV++Y
Sbjct: 171 AEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSLF--LEMGVSPDVVTY 228

Query: 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
           N I +G C  +  ++A +V ++MV++G+ PN  TYN ++ G  +A +++ A   F +M  
Sbjct: 229 NTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVD 288

Query: 271 RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
           +  +   VTY TI+ G      + RA  VF  M++ GV P   TYN +I  LCK  +++ 
Sbjct: 289 KGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDK 348

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           A  VF++M+ KG  P++ TY ++I GLC    ++RA     +M D   +PN  TYN LI 
Sbjct: 349 AEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIH 408

Query: 391 YFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450
            +   G+ E  ++  ++M +    P++ TY +L+  +    K ++   A  L   M+ +G
Sbjct: 409 GYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNE---ARSLFDSMIRKG 465

Query: 451 FMPRKFTFNRVLNGLLLIGNQGLAKEI 477
             P    +  +L+G    G +G   E+
Sbjct: 466 IKPSVTIYGIMLHGY---GKKGALSEM 489



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 172/362 (47%), Gaps = 4/362 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   + ++      +  +M    + P+  T+  I +    A   DRA  +F  M
Sbjct: 262 TYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQM 321

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
            + G +    ++NTI+D LCK + ++KA  +F+    K  K D ++Y +I +G C  +  
Sbjct: 322 IDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSV 381

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           ++A  V ++M+D+G+ PN  TYN ++ GY   GQ EE  +   EM     E DV TY  +
Sbjct: 382 DRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLL 441

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +      G+   AR++FD M+  G+ PSV  Y  M+    KK ++     +   MV  G 
Sbjct: 442 LDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGI 501

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN   +N VI        ++  +    +MK     PNV TY  LI   C  G ++  + 
Sbjct: 502 SPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVL 561

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
            F +M +    PN   +N L+  +    K + +    +L +EM+++G  P    FN VL 
Sbjct: 562 QFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKV---EELFLEMLNQGIRPDIVFFNTVLC 618

Query: 464 GL 465
            L
Sbjct: 619 NL 620



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 171/373 (45%), Gaps = 39/373 (10%)

Query: 132 LSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEK 191
           + + P   T+  I +    A + DRA  +F  M E G + +  ++NTI+D LCK ++V+ 
Sbjct: 219 MGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDM 278

Query: 192 AYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250
           A  +F K+     K   ++YN I +G C  +  ++A  V ++M+DRG+ P+  TYN ++ 
Sbjct: 279 AEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIID 338

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
           G  +A  I++A   F +M  +  + D +TYT I+ G      + RA  VF  M++ GV P
Sbjct: 339 GLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKP 398

Query: 311 SVATYNAMIQ-----------------------------------VLCKKDSVENAILVF 335
           +  TYN +I                                     LCK      A  +F
Sbjct: 399 NNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLF 458

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
           + M+ KG  P+ T Y +++ G    G +    + +  M  +   PN + +N +I  +   
Sbjct: 459 DSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKR 518

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
             I+  + +F KM      PN+ TY  LI ++    + DD ++      +M++ G  P  
Sbjct: 519 AMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQ---FNQMINEGVTPNN 575

Query: 456 FTFNRVLNGLLLI 468
             FN ++ GL  +
Sbjct: 576 VVFNSLVYGLCTV 588



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 176/369 (47%), Gaps = 4/369 (1%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID   + +       +  +M    + P   T+  +   Y+S G+ +  V+    M  H  
Sbjct: 372 IDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDL 431

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
              + ++  +LD LCK  K  +A +LF  + R   K  V  Y ++ +G+      ++  +
Sbjct: 432 EPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHD 491

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           +L  MV  G++PN   +N V+  Y +   I+E    F++MK++    +VVTY T++    
Sbjct: 492 LLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALC 551

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
            +G +  A   F+ M+N GV P+   +N+++  LC  D  E    +F EM+ +G  P+  
Sbjct: 552 KLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIV 611

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            +N V+  LC  G +  A   +  M     +P+V +YN LI   C A  ++  ++L + M
Sbjct: 612 FFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGM 671

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
            S    PN+ +YN L+       + D+   A  L  EM+ +G  P   T+N +LNGL   
Sbjct: 672 VSAGLKPNIVSYNTLLHGYCKAGRIDN---AYCLFREMLRKGVTPGVETYNTILNGLFRS 728

Query: 469 GNQGLAKEI 477
           G    A+E+
Sbjct: 729 GRFSEAREL 737



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 167/349 (47%), Gaps = 6/349 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   ID   +L          ++M +  + P    F  +     +  K ++  ++FL M
Sbjct: 542 TYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEM 601

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKR 222
              G R  +  FNT+L  LCKE +V +A  L    V  G  K DVISYN + +G C   R
Sbjct: 602 LNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMG-LKPDVISYNTLIDGHCFASR 660

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
            ++A+++L  MV  GL PN+ +YN +L GY +AG+I+ A+  F EM ++     V TY T
Sbjct: 661 MDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNT 720

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           I++G    G    AR ++  M+    L S+ TY+ ++   CK +  + A  +F+ +    
Sbjct: 721 ILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMD 780

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
              +  T+N++I GL   G  E A++    +  +   P+V TY ++     + G +E   
Sbjct: 781 LQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELD 840

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
            LF  M      PN    N LI  +  R    ++  AG  L ++ ++ F
Sbjct: 841 CLFSVMEKSGTAPNSHMLNALIRKLLDRG---EIPRAGAYLSKLDEKNF 886



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 144/315 (45%), Gaps = 2/315 (0%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           +  V  L   M +  + P    F  +       G+   A ++  SM   G +  + S+NT
Sbjct: 591 WEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNT 650

Query: 179 ILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           ++D  C   ++++A  L   +     K +++SYN + +G+C   R + A  + +EM+ +G
Sbjct: 651 LIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKG 710

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
           + P + TYN +L G FR+G+  EA   ++ M K +    + TY+ I+ GF        A 
Sbjct: 711 VTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAF 770

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
            +F  + +  +   + T+N MI  L K    E+A+ +F  +   G +P+  TY ++   L
Sbjct: 771 KIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENL 830

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
              G +E        M+     PN    N LIR   D GEI R      K+         
Sbjct: 831 IEEGSLEELDCLFSVMEKSGTAPNSHMLNALIRKLLDRGEIPRAGAYLSKLDEKNFSLEA 890

Query: 418 DTYNILISSMFVRKK 432
            T ++LI S+F R++
Sbjct: 891 STTSMLI-SLFSREE 904



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 158/366 (43%), Gaps = 4/366 (1%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           +L   M    + P+   + I+   Y   G       +   M  +G   +   FNT++   
Sbjct: 456 SLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAY 515

Query: 184 CKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
            K   +++  ++F K+ +     +V++Y  + +  C + R + A+    +M++ G+ PN 
Sbjct: 516 AKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNN 575

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
             +N ++ G     + E+    FLEM  +    D+V + T++      G +  AR + D 
Sbjct: 576 VVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDS 635

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           MV  G+ P V +YN +I   C    ++ A+ + + MV  G  PN  +YN ++ G C  G 
Sbjct: 636 MVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGR 695

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           ++ A      M      P V+TYN ++     +G      EL+  M     L ++ TY+I
Sbjct: 696 IDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSI 755

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           ++         D+   A K+   +          TFN +++GL   G +  A ++     
Sbjct: 756 ILDGFCKNNCFDE---AFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIP 812

Query: 483 RCGRLP 488
             G +P
Sbjct: 813 ANGLVP 818



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 92/207 (44%), Gaps = 12/207 (5%)

Query: 91  NILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVS 150
           NI+SY+        +  H    A R+ +    + L   M    + P  +T+  I      
Sbjct: 679 NIVSYN--------TLLHGYCKAGRIDN---AYCLFREMLRKGVTPGVETYNTILNGLFR 727

Query: 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVIS 209
           +G+   A +++++M +     S+ +++ ILD  CK    ++A+ +F+       + D+I+
Sbjct: 728 SGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIIT 787

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           +N++ +G     R   A+++   +   GL P++ TY ++ +     G +EE    F  M+
Sbjct: 788 FNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVME 847

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           K     +      ++      GEI RA
Sbjct: 848 KSGTAPNSHMLNALIRKLLDRGEIPRA 874


>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 119/407 (29%), Positives = 204/407 (50%), Gaps = 13/407 (3%)

Query: 80  WNHALKALHFFN-ILSYHPTYAHSPSSFDHAIDLA--ARLRDYRTVWTLVHRMKSLSLGP 136
           +N    AL  FN +L  HP     PS+ D    L   A+++ Y TV +L  +M S  + P
Sbjct: 128 FNTLDDALSSFNRMLHMHP----PPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPP 183

Query: 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF 196
              T  I+   +    +   A  +   + + GC+    +FNT++  LC E K+ +A +LF
Sbjct: 184 DVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLF 243

Query: 197 KVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
               G+ F+ DV++Y  + NG C V  T+ A+ +L+ MV +   PN+  YN ++    + 
Sbjct: 244 DKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKD 303

Query: 256 GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
            Q+ EA+  F EM  +    D+ TY +++H    + E K    + + MVN  ++P+V  +
Sbjct: 304 RQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVF 363

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           + ++  LCK+  +  A  V + M+ +G  P+  TY  ++ G C   EM+ A++    M  
Sbjct: 364 STVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVH 423

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
             C PNV++YNILI  +C    +++ + L E+M     + +  TYN LI  +    +   
Sbjct: 424 KGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGR--- 480

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           L  A  L  EMV  G +P   T+  +L+   L  N  LA+ ++ L++
Sbjct: 481 LQHAIALFHEMVASGQIPDLVTYRILLD--YLCKNHHLAEAMVLLKA 525



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 168/331 (50%), Gaps = 4/331 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+  +       G    A+++  SM +  CR ++ ++NTI+D LCK+++V +A+NL
Sbjct: 253 PDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNL 312

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F ++       D+ +YN + +  C +        +L EMV+  + PN+  ++ V+    +
Sbjct: 313 FSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCK 372

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G I  A      M KR  E DVVTYT ++ G  +  E+  A  VFD MV+ G +P+V +
Sbjct: 373 EGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRS 432

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN +I   C+   ++ A+ + E+M  +G + ++ TYN +I GLCH G ++ A+     M 
Sbjct: 433 YNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMV 492

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
                P++ TY IL+ Y C    +   + L + +       ++  YNI I  M    ++ 
Sbjct: 493 ASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMC---RAG 549

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           +L  A  L   +  +G  P   T+N +++GL
Sbjct: 550 ELEAARDLFSNLSSKGLQPDVRTYNIMIHGL 580



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 189/392 (48%), Gaps = 10/392 (2%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   + R     + L   M +  + P   T+  +     +  +      +   M
Sbjct: 292 AYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEM 351

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKR 222
                  ++  F+T++D LCKE  +  A+++  +   RG  + DV++Y  + +G CL   
Sbjct: 352 VNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRG-VEPDVVTYTALMDGHCLRSE 410

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
            ++A++V   MV +G  PN+ +YNI++ GY +  ++++A     +M  +    D VTY T
Sbjct: 411 MDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNT 470

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++HG   VG ++ A  +F  MV  G +P + TY  ++  LCK   +  A+++ + + G  
Sbjct: 471 LIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSN 530

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
              +   YN+ I G+C  GE+E A +    +     +P+V+TYNI+I   C  G ++   
Sbjct: 531 LDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEAN 590

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           +LF KM    C  +   YN +I       +S++   A +LL EM+  GF     T   ++
Sbjct: 591 KLFRKMDENGCSRDGCIYNTIIRGFL---RSNETFGATQLLQEMLAEGFSADVSTTTLIV 647

Query: 463 NGLLLIGNQGLAKEILRLQSR-CGRLPRQFKL 493
               ++ + GL +   RL+ R  G   R+  L
Sbjct: 648 E---MLSDDGLDQSFERLRLRGVGEEDRELHL 676



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 103/213 (48%), Gaps = 3/213 (1%)

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
           DV T   +++ F  +  +  A +V   ++  G  P   T+N +I+ LC +  +  A+ +F
Sbjct: 184 DVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLF 243

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
           ++ +G+G+ P+  TY  ++ GLC  G    A+  +  M    C PNV  YN +I   C  
Sbjct: 244 DKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKD 303

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
            ++     LF +M +    P++ TYN LI ++    +   +     LL EMV+   MP  
Sbjct: 304 RQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTT---LLNEMVNSKIMPNV 360

Query: 456 FTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             F+ V++ L   G   +A +++ +  + G  P
Sbjct: 361 VVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEP 393



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 5/161 (3%)

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
           +++++A+  F  M+     P++  +  ++  +         L    +M      P+V T 
Sbjct: 129 NTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTL 188

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           NILI  FC    +     +  K+    C P+  T+N LI  + V  K  + L    L  +
Sbjct: 189 NILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEAL---HLFDK 245

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR--LQSRC 484
            +  GF P   T+  ++NGL  +GN   A  +LR  +Q  C
Sbjct: 246 TIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNC 286


>gi|356570295|ref|XP_003553325.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Glycine max]
          Length = 516

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 112/407 (27%), Positives = 199/407 (48%), Gaps = 10/407 (2%)

Query: 51  TDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAI 110
           + P    Q L   S+  + +LV +++ R  N    A  FF      P YAHS   +   I
Sbjct: 44  SGPSQTKQKLEHCSVDLSAKLVVEVLLRTRNDWEAAFTFFLWAGKQPGYAHSIREYHSMI 103

Query: 111 DLAARLRDYRTVWTLVHRMKSLSLGP---TQKTFAIIAERYVSAGKADRAVKIFLSMHEH 167
            +  ++R + T W L+  M+    GP   T +T  I+  +Y +     RA+  F +  + 
Sbjct: 104 SILGKMRKFDTAWNLIEEMRRGRTGPSLVTPQTLLIMIRKYCAVHDVARAINTFYAYKQF 163

Query: 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWC-LVKRTNKA 226
             +  L  F+++L  LC+ K V+ A +L    +  F  D  S+N+I NGWC L+  T+ A
Sbjct: 164 NFQVGLEEFHSLLSALCRYKNVQDAEHLLFCNKNLFPLDTKSFNIILNGWCNLIVSTSHA 223

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
             +  EM  R +  ++ +Y  ++  Y ++ ++ +  R F EMKKRK   D   Y  +++ 
Sbjct: 224 ERIWHEMSKRRIQHDVVSYGSIISCYSKSSKLYKVLRMFDEMKKRKITPDRKVYNAVIYA 283

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
                 +K A N+   + +  V P+V TYN++I+ LCK   V+ A  +F E++ +   P 
Sbjct: 284 LAKGRLVKEAVNLIGTLEDNDVTPNVVTYNSLIKPLCKAGKVDEAKQLFYEILKRHLSPT 343

Query: 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
             T++   R L      E   E + +MK+  C P ++TY +L+R FC   +++   ++++
Sbjct: 344 IQTFHAFFRIL---RTKEEVFELLDKMKELGCYPTIETYIMLMRKFCRWRQLDDVFKMWD 400

Query: 407 KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
            M       +  +Y +LI  +F+  K ++   A     EM ++GF+P
Sbjct: 401 AMREDGIGHDRSSYIVLIHGLFLNGKLEE---AHTYYAEMQEKGFLP 444



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/230 (18%), Positives = 103/230 (44%), Gaps = 4/230 (1%)

Query: 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           H   S+   I   ++      V  +   MK   + P +K +  +            AV +
Sbjct: 237 HDVVSYGSIISCYSKSSKLYKVLRMFDEMKKRKITPDRKVYNAVIYALAKGRLVKEAVNL 296

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCL 219
             ++ ++    ++ ++N+++  LCK  KV++A  LF ++ +      + +++       +
Sbjct: 297 IGTLEDNDVTPNVVTYNSLIKPLCKAGKVDEAKQLFYEILKRHLSPTIQTFHAFFR---I 353

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
           ++   +  E+L +M + G  P + TY ++++ + R  Q+++ ++ +  M++     D  +
Sbjct: 354 LRTKEEVFELLDKMKELGCYPTIETYIMLMRKFCRWRQLDDVFKMWDAMREDGIGHDRSS 413

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
           Y  ++HG  + G+++ A   +  M   G LP   T   +   +  K + E
Sbjct: 414 YIVLIHGLFLNGKLEEAHTYYAEMQEKGFLPEPKTEEMLQAWVSGKQATE 463


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 104/366 (28%), Positives = 186/366 (50%), Gaps = 4/366 (1%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            L+ RM +    P   T+  +       G  D A+ +   M +      +  + TI+D L
Sbjct: 206 ALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDAL 265

Query: 184 CKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           C  K V  A NLF     K  + +V++YN +    C   R + A  +L +M++R +NPN+
Sbjct: 266 CNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNV 325

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            T++ ++  + + G++ EA + + EM KR  + D+ TY+++++GF +   +  A+++F+ 
Sbjct: 326 VTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFEL 385

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M++    P+V TYN +I+  CK   VE  + +F EM  +G + N+ TYN +I+GL   G+
Sbjct: 386 MISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGD 445

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
            + A +   +M  D   P++ TY+IL+   C  G++E+ L +FE +      P++ TYNI
Sbjct: 446 CDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNI 505

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           +I  M    K +D      L   +  +G  P    +  +++G    G +  A  + R   
Sbjct: 506 MIEGMCKAGKVED---GWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMK 562

Query: 483 RCGRLP 488
             G LP
Sbjct: 563 EDGTLP 568



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 178/357 (49%), Gaps = 4/357 (1%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID     ++      L   M +  + P   T+  +     + G+   A ++   M E   
Sbjct: 262 IDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKI 321

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
             ++ +F+ ++D   KE K+ +A  L+ ++ +     D+ +Y+ + NG+C+  R ++A  
Sbjct: 322 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH 381

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           + + M+ +   PN+ TYN ++KG+ +A ++EE    F EM +R    + VTY T++ G  
Sbjct: 382 MFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLF 441

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G+   A+ +F  MV+ GV P + TY+ ++  LCK   +E A++VFE +      P+  
Sbjct: 442 QAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIY 501

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           TYN++I G+C  G++E   +    +     +PNV  Y  +I  FC  G  E    LF +M
Sbjct: 502 TYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREM 561

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
                LPN  TYN LI +   R +  D   + +L+ EM   GF+    T + V+N L
Sbjct: 562 KEDGTLPNSGTYNTLIRA---RLRDGDKAASAELIKEMRSCGFVGDASTISMVINML 615



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 110/404 (27%), Positives = 194/404 (48%), Gaps = 39/404 (9%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           S   F+  +   A++  +  V +L  RM++L +     ++ I+   +    +   A+ + 
Sbjct: 79  SIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVL 138

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLV 220
             M + G    + + +++L+  C  K++ +A  L  ++F  +++ + +++N + +G  L 
Sbjct: 139 GKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLH 198

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
            + ++A+ ++  MV RG  P+L TY  V+ G  + G I+ A     +M+K K E DVV Y
Sbjct: 199 NKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIY 258

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK-----------KDSVE 329
           TTI+        +  A N+F  M N G+ P+V TYN++I+ LC             D +E
Sbjct: 259 TTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE 318

Query: 330 NAI------------------------LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
             I                         +++EM+ +   P+  TY+ +I G C    ++ 
Sbjct: 319 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 378

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           A      M   +C PNV TYN LI+ FC A  +E G+ELF +M     + N  TYN LI 
Sbjct: 379 AKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQ 438

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
            +F   ++ D  +A K+  +MV  G  P   T++ +L+GL   G
Sbjct: 439 GLF---QAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYG 479



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 137/277 (49%), Gaps = 2/277 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L   M   S+ P   T++ +   +    + D A  +F  M    C  ++ ++NT++   C
Sbjct: 347 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFC 406

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K K+VE+   LF+    +    + ++YN +  G       + A ++ K+MV  G+ P++ 
Sbjct: 407 KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDII 466

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY+I+L G  + G++E+A   F  ++K K E D+ TY  ++ G    G+++   ++F  +
Sbjct: 467 TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 526

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              GV P+V  Y  MI   C+K   E A  +F EM   G +PNS TYN +IR     G+ 
Sbjct: 527 SLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDK 586

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
             + E +  M+      +  T +++I    D G +E+
Sbjct: 587 AASAELIKEMRSCGFVGDASTISMVINMLHD-GRLEK 622



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 172/356 (48%), Gaps = 17/356 (4%)

Query: 132 LSLGPTQKTFAIIAERYVSAGKADRAVK---IFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           L +  +Q     +A+R+    KA        ++ S   +  R+ L S N +LDL     K
Sbjct: 7   LGIVASQSKKMSLAKRFAQLRKASPLFSLRGVYFSAASYDYREKL-SRNVLLDL-----K 60

Query: 189 VEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           ++ A +LF ++ + +    ++ +N + +    + + +  + + + M +  ++ +L +YNI
Sbjct: 61  LDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 120

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++  + R  Q+  A     +M K   E D+VT +++++G+     I  A  + D M    
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME 180

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
             P+  T+N +I  L   +    A+ + + MV +G  P+  TY  V+ GLC  G+++ AL
Sbjct: 181 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 240

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
             + +M+  + E +V  Y  +I   C+   +   L LF +M +    PN+ TYN LI  +
Sbjct: 241 SLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 300

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL----LIGNQGLAKEILR 479
               +  D   A +LL +M++R   P   TF+ +++  +    L+  + L  E+++
Sbjct: 301 CNYGRWSD---ASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIK 353


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 104/366 (28%), Positives = 186/366 (50%), Gaps = 4/366 (1%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            L+ RM +    P   T+  +       G  D A+ +   M +      +  + TI+D L
Sbjct: 190 ALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDAL 249

Query: 184 CKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           C  K V  A NLF     K  + +V++YN +    C   R + A  +L +M++R +NPN+
Sbjct: 250 CNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNV 309

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            T++ ++  + + G++ EA + + EM KR  + D+ TY+++++GF +   +  A+++F+ 
Sbjct: 310 VTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFEL 369

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M++    P+V TYN +I+  CK   VE  + +F EM  +G + N+ TYN +I+GL   G+
Sbjct: 370 MISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGD 429

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
            + A +   +M  D   P++ TY+IL+   C  G++E+ L +FE +      P++ TYNI
Sbjct: 430 CDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNI 489

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           +I  M    K +D      L   +  +G  P    +  +++G    G +  A  + R   
Sbjct: 490 MIEGMCKAGKVED---GWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMK 546

Query: 483 RCGRLP 488
             G LP
Sbjct: 547 EDGTLP 552



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 178/357 (49%), Gaps = 4/357 (1%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID     ++      L   M +  + P   T+  +     + G+   A ++   M E   
Sbjct: 246 IDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKI 305

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
             ++ +F+ ++D   KE K+ +A  L+ ++ +     D+ +Y+ + NG+C+  R ++A  
Sbjct: 306 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH 365

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           + + M+ +   PN+ TYN ++KG+ +A ++EE    F EM +R    + VTY T++ G  
Sbjct: 366 MFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLF 425

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G+   A+ +F  MV+ GV P + TY+ ++  LCK   +E A++VFE +      P+  
Sbjct: 426 QAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIY 485

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           TYN++I G+C  G++E   +    +     +PNV  Y  +I  FC  G  E    LF +M
Sbjct: 486 TYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREM 545

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
                LPN  TYN LI +   R +  D   + +L+ EM   GF+    T + V+N L
Sbjct: 546 KEDGTLPNSGTYNTLIRA---RLRDGDKAASAELIKEMRSCGFVGDASTISMVINML 599



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 191/379 (50%), Gaps = 4/379 (1%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           S   F+  +   A++  +  V +L  RM++L +     ++ I+   +    +   A+ + 
Sbjct: 63  SIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVL 122

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLV 220
             M + G    + + +++L+  C  K++ +A  L  ++F  +++ + +++N + +G  L 
Sbjct: 123 GKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLH 182

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
            + ++A+ ++  MV RG  P+L TY  V+ G  + G I+ A     +M+K K E DVV Y
Sbjct: 183 NKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIY 242

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
           TTI+        +  A N+F  M N G+ P+V TYN++I+ LC      +A  +  +M+ 
Sbjct: 243 TTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE 302

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           +   PN  T++ +I      G++  A +    M     +P++ TY+ LI  FC    ++ 
Sbjct: 303 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 362

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
              +FE M S  C PN+ TYN LI      K+ ++ +   +L  EM  RG +    T+N 
Sbjct: 363 AKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGM---ELFREMSQRGLVGNTVTYNT 419

Query: 461 VLNGLLLIGNQGLAKEILR 479
           ++ GL   G+  +A++I +
Sbjct: 420 LIQGLFQAGDCDMAQKIFK 438



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 137/277 (49%), Gaps = 2/277 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L   M   S+ P   T++ +   +    + D A  +F  M    C  ++ ++NT++   C
Sbjct: 331 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFC 390

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K K+VE+   LF+    +    + ++YN +  G       + A ++ K+MV  G+ P++ 
Sbjct: 391 KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDII 450

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY+I+L G  + G++E+A   F  ++K K E D+ TY  ++ G    G+++   ++F  +
Sbjct: 451 TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 510

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              GV P+V  Y  MI   C+K   E A  +F EM   G +PNS TYN +IR     G+ 
Sbjct: 511 SLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDK 570

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
             + E +  M+      +  T +++I    D G +E+
Sbjct: 571 AASAELIKEMRSCGFVGDASTISMVINMLHD-GRLEK 606



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 161/325 (49%), Gaps = 14/325 (4%)

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWC 218
           ++ S   +  R+ L S N +LDL     K++ A +LF ++ + +    ++ +N + +   
Sbjct: 22  VYFSAASYDYREKL-SRNVLLDL-----KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIA 75

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
            + + +  + + + M +  ++ +L +YNI++  + R  Q+  A     +M K   E D+V
Sbjct: 76  KMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIV 135

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           T +++++G+     I  A  + D M      P+  T+N +I  L   +    A+ + + M
Sbjct: 136 TLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRM 195

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
           V +G  P+  TY  V+ GLC  G+++ AL  + +M+  + E +V  Y  +I   C+   +
Sbjct: 196 VARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNV 255

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
              L LF +M +    PN+ TYN LI  +    +  D   A +LL +M++R   P   TF
Sbjct: 256 NDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSD---ASRLLSDMIERKINPNVVTF 312

Query: 459 NRVLNGLL----LIGNQGLAKEILR 479
           + +++  +    L+  + L  E+++
Sbjct: 313 SALIDAFVKEGKLVEAEKLYDEMIK 337


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 128/469 (27%), Positives = 219/469 (46%), Gaps = 23/469 (4%)

Query: 22  LSPLTTTSPAPLPPAAADPAALASLILTSTDPRTLTQTLHCPSL---HWTP-------QL 71
           +S L  +SP P       P     LI T T  R   +      L   H  P        L
Sbjct: 75  VSSLLASSPTP------QPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNAL 128

Query: 72  VDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKS 131
           +  + +  W H  +  +   + S     A++ +   H+     +  ++    T++  M+ 
Sbjct: 129 LAVLSRAGWPHLAQEAYRLVLSSDSEVNAYTLNIMVHSY---CKTLEFDGADTVISEMEK 185

Query: 132 LSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEK 191
             + P   T  ++ +    AG  D A+ +  SM   G +  + ++N++L  LCK ++ +K
Sbjct: 186 RCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDK 245

Query: 192 AYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250
           A  +F+   +     DV S+N++  G+C V    +A++  KEM  R + P++ +++ ++ 
Sbjct: 246 AKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIG 305

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
            + R G+++ A  +  EMK      D V YT ++ GF   G +  A  V D MV  G LP
Sbjct: 306 LFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLP 365

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
            V TYN ++  LCK+  + +A  +  EM  +G  P+  T+  +I G C  G  E AL+  
Sbjct: 366 DVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLF 425

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
             +      P+V TYN LI   C  G++ +  EL++ M +   LPN  TY+ILI S   +
Sbjct: 426 DTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEK 485

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
            + +D   A   L EMV +G +P   T+N ++ G    GN    ++ L+
Sbjct: 486 GQVED---AFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQ 531



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 181/364 (49%), Gaps = 4/364 (1%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M   S+ P  ++F I+   +   G+   AVK +  M        + SF+ ++ L  +  +
Sbjct: 253 MDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGE 312

Query: 189 VEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           ++ A    +  +G     D + Y ++  G+C     ++AL V  EMV  G  P++ TYN 
Sbjct: 313 MDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNT 372

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           +L G  +  ++ +A +   EM++R    D+ T+TT++HG+   G  + A  +FD ++   
Sbjct: 373 LLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQR 432

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           + P V TYN++I  +C+K  +  A  ++++M  +  +PN  TY+++I   C  G++E A 
Sbjct: 433 LRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAF 492

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
            F+  M      PN++TYN +I+ +C +G +++G +  +KM      P+L T+N LI   
Sbjct: 493 GFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGY 552

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
               K +++  A  +   M      P   T+N ++NG    GN   A  + +     G  
Sbjct: 553 I---KEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIE 609

Query: 488 PRQF 491
           P ++
Sbjct: 610 PDRY 613



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 167/349 (47%), Gaps = 8/349 (2%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           +V  + + S  P  + F ++   Y  + K   A + F  + +H      ++ N +L +L 
Sbjct: 74  IVSSLLASSPTPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAVLS 133

Query: 185 KE---KKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           +       ++AY L  V     + +  + N++ + +C     + A  V+ EM  R + P+
Sbjct: 134 RAGWPHLAQEAYRL--VLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPD 191

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           + T+N+++   FRAG ++ A      M  R  +  +VTY +++ G        +A+ VF 
Sbjct: 192 VVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFR 251

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M    V P V ++N +I   C+   V+ A+  ++EM  +   P+  +++ +I      G
Sbjct: 252 TMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRG 311

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
           EM+ A  ++  MK     P+   Y ++I  FC AG +   L + ++M    CLP++ TYN
Sbjct: 312 EMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYN 371

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
            L++ +    K   LL A KLL EM +RG  P   TF  +++G    GN
Sbjct: 372 TLLNGLC---KQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGN 417



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 152/340 (44%), Gaps = 36/340 (10%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           SF   I L +R  +       +  MK L L P    + ++   +  AG    A+++   M
Sbjct: 299 SFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEM 358

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKV----------------------------------- 189
              GC   + ++NT+L+ LCK+ ++                                   
Sbjct: 359 VGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNF 418

Query: 190 EKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
           E A  LF  + R + + DV++YN + +G C      KA E+  +M  R + PN  TY+I+
Sbjct: 419 ENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSIL 478

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           +  +   GQ+E+A+ F  EM K+    ++ TY +I+ G+   G +K+ +     M    V
Sbjct: 479 IDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNV 538

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
            P + T+N +I    K++++  A  VF  M  +   P++ TYN++I G    G M+ A  
Sbjct: 539 FPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDAGR 598

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
               M D   EP+  TY  LI     AG  ++  +L ++M
Sbjct: 599 VFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEM 638



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 118/259 (45%), Gaps = 36/259 (13%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L++ M+   + P   TF  +   Y   G  + A+++F ++     R  + ++N+++D +C
Sbjct: 389 LLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMC 448

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           ++  + KA  L+     +    + I+Y+++ +  C   +   A   L EMV +G  PN+ 
Sbjct: 449 RKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIR 508

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMK---------------------------------- 269
           TYN ++KGY R+G +++  +F  +M+                                  
Sbjct: 509 TYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIM 568

Query: 270 -KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
            K     D VTY  I++GF   G ++ A  VF GM + G+ P   TY ++I       + 
Sbjct: 569 EKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNS 628

Query: 329 ENAILVFEEMVGKGYMPNS 347
           + A  + +EM+ +G+ P+ 
Sbjct: 629 KQAFQLHDEMIHRGFAPDD 647



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 81/199 (40%), Gaps = 5/199 (2%)

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
           R +   ++     P    ++ +I+   +      A   F  ++       ++  N ++  
Sbjct: 72  REIVSSLLASSPTPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAV 131

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
           L   G    A E    +   + E N  T NI++  +C   E +    +  +M      P+
Sbjct: 132 LSRAGWPHLAQEAYRLVLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPD 191

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKE 476
           + T+N+LI + F   ++ D+  A  L+  M +RG  P   T+N VL GL        AKE
Sbjct: 192 VVTHNVLIDARF---RAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKE 248

Query: 477 ILRLQSRCGRLP--RQFKL 493
           + R   +C   P  R F +
Sbjct: 249 VFRTMDQCSVAPDVRSFNI 267


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 174/331 (52%), Gaps = 7/331 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+ ++   Y   G+   A+++   M        + ++NTIL  LC   K+++A  +
Sbjct: 178 PDVITYNVLISGYCKTGEIGSALQLLDRM---SVSPDVVTYNTILRTLCDSGKLKEAMEV 234

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             +  + +   DVI+Y ++    C      +A+++L EM D+G  P++ TYN+++ G  +
Sbjct: 235 LDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICK 294

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G+++EA RF   M    C+ +V+T+  I+      G    A      M+  G  PSV T
Sbjct: 295 EGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVT 354

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           +N +I  LC+K  +  AI V E+M   G  PNS +YN ++  LC   +MERA+E++  M 
Sbjct: 355 FNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMV 414

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
              C P++ TYN L+   C  G+++  +E+  ++GS  C P L TYN +I  +    K+D
Sbjct: 415 SRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTD 474

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           D   A KLL EM  +G  P   T++ ++ GL
Sbjct: 475 D---AIKLLDEMKGKGLKPDIITYSTLVGGL 502



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 172/345 (49%), Gaps = 4/345 (1%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
           + + +  +  +S+ P   T+  I      +GK   A+++     +  C   + ++  +++
Sbjct: 196 IGSALQLLDRMSVSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIE 255

Query: 182 LLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
             CKE  V +A  L    R K  K DV++YNV+ NG C   R ++A+  L  M   G  P
Sbjct: 256 ATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQP 315

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           N+ T+NI+L+     G+  +A +F  EM ++ C   VVT+  +++     G I RA +V 
Sbjct: 316 NVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVL 375

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           + M   G  P+  +YN ++  LCK   +E AI   + MV +G  P+  TYN ++  LC  
Sbjct: 376 EKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKD 435

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
           G+++ A+E + ++    C P + TYN +I      G+ +  ++L ++M      P++ TY
Sbjct: 436 GKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITY 495

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           + L+  +    K D+ +     L EM   G  P   T+N ++ GL
Sbjct: 496 STLVGGLSREGKVDEAIAFFHDLEEM---GVKPNAITYNSIMLGL 537



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 108/393 (27%), Positives = 183/393 (46%), Gaps = 49/393 (12%)

Query: 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA- 205
           R V  G+ +   K    M   G    + +  +++  LCK  K  KA  + ++        
Sbjct: 119 RLVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVP 178

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           DVI+YNV+ +G+C       AL++L  M    ++P++ TYN +L+    +G+++EA    
Sbjct: 179 DVITYNVLISGYCKTGEIGSALQLLDRM---SVSPDVVTYNTILRTLCDSGKLKEAMEVL 235

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
               +R+C  DV+TYT ++        + +A  + D M + G  P V TYN +I  +CK+
Sbjct: 236 DRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKE 295

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
             ++ AI     M   G  PN  T+N+++R +C TG    A +F+  M    C P+V T+
Sbjct: 296 GRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTF 355

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD------DLLV- 438
           NILI + C  G I R +++ EKM    C PN  +YN L+ ++   KK +      D++V 
Sbjct: 356 NILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVS 415

Query: 439 -------------------------AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG---- 469
                                    A ++L ++  +G  P   T+N V++GL  +G    
Sbjct: 416 RGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDD 475

Query: 470 ---------NQGLAKEILRLQSRCGRLPRQFKL 493
                     +GL  +I+   +  G L R+ K+
Sbjct: 476 AIKLLDEMKGKGLKPDIITYSTLVGGLSREGKV 508



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 100/336 (29%), Positives = 157/336 (46%), Gaps = 38/336 (11%)

Query: 177 NTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           N  L  L +  ++E+ +   +  V RG    D+I+   +  G C   +T KA  V++ + 
Sbjct: 114 NNHLRRLVRNGELEEGFKFLEDMVCRGDI-PDIIACTSLIRGLCKTGKTWKATRVMEILE 172

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK------------------------- 269
           D G  P++ TYN+++ GY + G+I  A +    M                          
Sbjct: 173 DSGAVPDVITYNVLISGYCKTGEIGSALQLLDRMSVSPDVVTYNTILRTLCDSGKLKEAM 232

Query: 270 -------KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322
                  +R+C  DV+TYT ++        + +A  + D M + G  P V TYN +I  +
Sbjct: 233 EVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGI 292

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
           CK+  ++ AI     M   G  PN  T+N+++R +C TG    A +F+  M    C P+V
Sbjct: 293 CKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSV 352

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
            T+NILI + C  G I R +++ EKM    C PN  +YN L+ ++   KK +    A + 
Sbjct: 353 VTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMER---AIEY 409

Query: 443 LIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           L  MV RG  P   T+N +L  L   G   +A EIL
Sbjct: 410 LDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL 445



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 143/287 (49%), Gaps = 1/287 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
            ++ M S    P   T  II     S G+   A K    M   GC  S+ +FN +++ LC
Sbjct: 304 FLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLC 363

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           ++  + +A ++  K+ +     + +SYN + +  C  K+  +A+E L  MV RG  P++ 
Sbjct: 364 RKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIV 423

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN +L    + G+++ A     ++  + C   ++TY T++ G   VG+   A  + D M
Sbjct: 424 TYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEM 483

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G+ P + TY+ ++  L ++  V+ AI  F ++   G  PN+ TYN ++ GLC   + 
Sbjct: 484 KGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQT 543

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
            RA++F+  M    C+P   +Y ILI      G  +  LEL  ++ S
Sbjct: 544 VRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAKEALELLNELCS 590



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 161/331 (48%), Gaps = 4/331 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M+     P   T+ ++       G+ D A++    M  +GC+ ++ + N IL  +C
Sbjct: 269 LLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMC 328

Query: 185 KEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
              +   A   L ++ R      V+++N++ N  C      +A++VL++M   G  PN  
Sbjct: 329 STGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSL 388

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           +YN +L    +  ++E A  +   M  R C  D+VTY T++      G++  A  + + +
Sbjct: 389 SYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQL 448

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            + G  P + TYN +I  L K    ++AI + +EM GKG  P+  TY+ ++ GL   G++
Sbjct: 449 GSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKV 508

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A+ F   +++   +PN  TYN ++   C A +  R ++    M +  C P   +Y IL
Sbjct: 509 DEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMIL 568

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
           I  +     + + L   +LL E+  RG + +
Sbjct: 569 IEGLAYEGLAKEAL---ELLNELCSRGVVKK 596



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 128/278 (46%), Gaps = 41/278 (14%)

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           L+   R G++EE ++F  +M  R    D++  T+++ G    G+  +A  V + + + G 
Sbjct: 117 LRRLVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGA 176

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
           +P V TYN +I   CK   + +A+ + + M      P+  TYN ++R LC +G+++ A+E
Sbjct: 177 VPDVITYNVLISGYCKTGEIGSALQLLDRM---SVSPDVVTYNTILRTLCDSGKLKEAME 233

Query: 369 FVGR-----------------------------------MKDDECEPNVQTYNILIRYFC 393
            + R                                   M+D  C+P+V TYN+LI   C
Sbjct: 234 VLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGIC 293

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
             G ++  +     M S  C PN+ T+NI++ SM    +  D   A K L EM+ +G  P
Sbjct: 294 KEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMD---AEKFLAEMIRKGCSP 350

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
              TFN ++N L   G  G A ++L    + G  P   
Sbjct: 351 SVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSL 388



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 140/309 (45%), Gaps = 41/309 (13%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYR--TVWTLVHRMKSLSLGPTQKTFA 142
           +A+ F N   + P+Y   P+   H I L +     R       +  M      P+  TF 
Sbjct: 300 EAIRFLN---HMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFN 356

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--R 200
           I+       G   RA+ +   M +HGC  +  S+N +L  LCK+KK+E+A     +   R
Sbjct: 357 ILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSR 416

Query: 201 GKF-----------------KADV-----------------ISYNVIANGWCLVKRTNKA 226
           G +                 K DV                 I+YN + +G   V +T+ A
Sbjct: 417 GCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDA 476

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
           +++L EM  +GL P++ TY+ ++ G  R G+++EA  FF ++++   + + +TY +I+ G
Sbjct: 477 IKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLG 536

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
                +  RA +    MV  G  P+  +Y  +I+ L  +   + A+ +  E+  +G +  
Sbjct: 537 LCKARQTVRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAKEALELLNELCSRGVVKK 596

Query: 347 STTYNVVIR 355
           S+   VV++
Sbjct: 597 SSAEQVVVK 605



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 107/235 (45%), Gaps = 3/235 (1%)

Query: 90  FNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLG--PTQKTFAIIAER 147
            ++L   P +  +P+S  +   L A  +D +    + +    +S G  P   T+  +   
Sbjct: 372 IDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTA 431

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKAD 206
               GK D AV+I   +   GC   L ++NT++D L K  K + A  L    +GK  K D
Sbjct: 432 LCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPD 491

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           +I+Y+ +  G     + ++A+    ++ + G+ PN  TYN ++ G  +A Q   A  F  
Sbjct: 492 IITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLA 551

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
            M  R C+    +Y  ++ G    G  K A  + + + + GV+   +    ++++
Sbjct: 552 YMVARGCKPTETSYMILIEGLAYEGLAKEALELLNELCSRGVVKKSSAEQVVVKI 606


>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
 gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
          Length = 802

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 121/412 (29%), Positives = 195/412 (47%), Gaps = 30/412 (7%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII------AERYVSAGKAD 155
           +PS F+  +      RDY   + L+ RM      P    + I        E   S     
Sbjct: 176 NPSLFNSLVHSYCNARDYPYAYKLLKRMADCGCPPGYVAYNIFIGSICGGEELPSPDLLA 235

Query: 156 RAVKIFLSMHEHGCRQSLNSFNT--ILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNV 212
            A K++  M    C   LN  NT      LC   K + A+ + KV  GK F  D  +Y+ 
Sbjct: 236 LAEKVYEEMLASSC--VLNKVNTANFARCLCGMGKFDMAFQIIKVMMGKGFVPDTSTYSK 293

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           +    C   +  KA  + +EM   G+NP++ TY I++  + +AG IE+A  +F EM+   
Sbjct: 294 VITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIG 353

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
           C  +VVTYT ++H +    ++ +A ++F+ M++ G  P+  TY+A++  LCK   ++ A 
Sbjct: 354 CSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLCKAGEIQKAC 413

Query: 333 LVFEEMVG----------------KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
            V+ +++G                    PN  TY  +I GLC   ++  A E +  M  +
Sbjct: 414 EVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSN 473

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
            CEPN   Y+ LI  FC  G+I+   E+F +M     LP + TY  LI +MF  ++ D  
Sbjct: 474 GCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLD-- 531

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            +A K+L +MV+    P   T+  +++GL  IG    A ++L +    G  P
Sbjct: 532 -LAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSP 582



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 108/394 (27%), Positives = 185/394 (46%), Gaps = 24/394 (6%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           S++   I            + L   MKS+ + P   T+ I+ + +  AG  ++A   F  
Sbjct: 289 STYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSWFDE 348

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKR 222
           M   GC  ++ ++  +L    K K++ +A ++F ++       + I+Y+ + +G C    
Sbjct: 349 MRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLCKAGE 408

Query: 223 TNKALEVLKEMVDRGLN----------------PNLTTYNIVLKGYFRAGQIEEAWRFFL 266
             KA EV  +++    N                PN+ TY  ++ G  +A ++ +A     
Sbjct: 409 IQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLD 468

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
            M    CE + + Y  ++ GF  VG+I  A+ VF  M   G LP+V TY ++I  + K  
Sbjct: 469 AMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDR 528

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            ++ A+ V  +MV     PN  TY  +I GLC  GE ++AL+ +  M++  C PNV TY 
Sbjct: 529 RLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYT 588

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            LI     +G+++  L+LF +M +  C PN  TY +LI+        D+   A  LL EM
Sbjct: 589 ALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCAAGLLDE---AHSLLSEM 645

Query: 447 VDRGFMPRKFT-FNRVLNGLL--LIGNQGLAKEI 477
             + + P+    +  V+ G     I + GL +E+
Sbjct: 646 -KQTYWPKYLQGYCSVVQGFSKKFIASLGLLEEL 678



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 104/427 (24%), Positives = 175/427 (40%), Gaps = 91/427 (21%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
            M+S+       T+  +   Y+ A +  +A  IF  M + GC  +  +++ ++D LCK  
Sbjct: 348 EMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLCKAG 407

Query: 188 KVEKAYNLFK-------------VFRGK----FKADVISYNVIANGWCLVKRTNKALEVL 230
           +++KA  ++               F GK       +V++Y  + +G C   +   A E+L
Sbjct: 408 EIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELL 467

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK-------------------- 270
             M+  G  PN   Y+ ++ G+ + G+I+ A   FL M K                    
Sbjct: 468 DAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKD 527

Query: 271 ---------------RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
                            C  +VVTYT ++ G   +GE ++A  +   M   G  P+V TY
Sbjct: 528 RRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTY 587

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
            A+I  L K   V+ ++ +F +M  KG  PN  TY V+I   C  G ++ A   +  MK 
Sbjct: 588 TALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQ 647

Query: 376 ----------------------------DECE-----PNVQTYNILIRYFCDAGEIERGL 402
                                       +E E     P    Y +LI  F  AG +E  L
Sbjct: 648 TYWPKYLQGYCSVVQGFSKKFIASLGLLEELESHGTVPIAPVYGLLIDNFSKAGRLEEAL 707

Query: 403 ELFEKM---GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
           EL ++M    S + + + D Y  LI ++ +   +  L  A +L  E+  +G +P    F 
Sbjct: 708 ELHKEMMELSSSLNITSKDMYTSLIQALCL---ASQLEKAFELYSEITRKGVVPELSVFV 764

Query: 460 RVLNGLL 466
            ++ GL+
Sbjct: 765 CLIKGLI 771



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/391 (24%), Positives = 159/391 (40%), Gaps = 46/391 (11%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
            +K     P+  T+  + +   +AG+ D   ++   M E G      +       LCKE 
Sbjct: 30  ELKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEG 89

Query: 188 KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           +   A  L  + R  FK D +    + +G       ++A+  L  M      PN+ TY  
Sbjct: 90  RWSDA--LVMIEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRT 147

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           +L G+ +  Q+    R    M K  C  +   + ++VH +    +   A  +   M + G
Sbjct: 148 LLTGFLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCG 207

Query: 308 VLPSVATYNAMIQVLCKKDSVENAIL------VFEEMV---------------------- 339
             P    YN  I  +C  + + +  L      V+EEM+                      
Sbjct: 208 CPPGYVAYNIFIGSICGGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMG 267

Query: 340 -------------GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
                        GKG++P+++TY+ VI  LC   ++E+A      MK     P+V TY 
Sbjct: 268 KFDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYT 327

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
           ILI  FC AG IE+    F++M S  C  N+ TY  L+ +     K+  L  A  +   M
Sbjct: 328 ILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYL---KAKQLPQASDIFNRM 384

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
           +D G  P   T++ +++GL   G    A E+
Sbjct: 385 IDAGCPPNTITYSALVDGLCKAGEIQKACEV 415



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 159/330 (48%), Gaps = 9/330 (2%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M S    P    +  + + +   GK D A ++FL M + G   +++++ +++D + 
Sbjct: 466 LLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMF 525

Query: 185 KEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K+++++ A   L ++       +V++Y  + +G C +    KAL++L  M ++G +PN+ 
Sbjct: 526 KDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVV 585

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY  ++ G  ++G+++ + + F++M  + C  + VTY  +++     G +  A ++   M
Sbjct: 586 TYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEM 645

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
                   +  Y +++Q   KK      +L  EE+   G +P +  Y ++I      G +
Sbjct: 646 KQTYWPKYLQGYCSVVQGFSKKFIASLGLL--EELESHGTVPIAPVYGLLIDNFSKAGRL 703

Query: 364 ERALEFVGRMKDDECEPNVQT---YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
           E ALE    M +     N+ +   Y  LI+  C A ++E+  EL+ ++     +P L  +
Sbjct: 704 EEALELHKEMMELSSSLNITSKDMYTSLIQALCLASQLEKAFELYSEITRKGVVPELSVF 763

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRG 450
             LI  +    K ++ L   +L   + D G
Sbjct: 764 VCLIKGLIKVNKWNEAL---QLCYSICDEG 790



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 122/286 (42%), Gaps = 10/286 (3%)

Query: 95  YHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKA 154
           Y PT  H+ +S    ID   + R       ++ +M   S  P   T+  + +     G+ 
Sbjct: 510 YLPT-VHTYTSL---IDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGEC 565

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVI 213
            +A+K+   M E GC  ++ ++  ++D L K  KV+ +  LF     K  A + ++Y V+
Sbjct: 566 QKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVL 625

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
            N  C     ++A  +L EM        L  Y  V++G+ +  +   +     E++    
Sbjct: 626 INHCCAAGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQGFSK--KFIASLGLLEELESHGT 683

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV---LPSVATYNAMIQVLCKKDSVEN 330
                 Y  ++  F   G ++ A  +   M+       + S   Y ++IQ LC    +E 
Sbjct: 684 VPIAPVYGLLIDNFSKAGRLEEALELHKEMMELSSSLNITSKDMYTSLIQALCLASQLEK 743

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
           A  ++ E+  KG +P  + +  +I+GL    +   AL+    + D+
Sbjct: 744 AFELYSEITRKGVVPELSVFVCLIKGLIKVNKWNEALQLCYSICDE 789



 Score = 40.0 bits (92), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/119 (20%), Positives = 59/119 (49%), Gaps = 4/119 (3%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS---FNTILD 181
           L+  ++S    P    + ++ + +  AG+ + A+++   M E     ++ S   + +++ 
Sbjct: 674 LLEELESHGTVPIAPVYGLLIDNFSKAGRLEEALELHKEMMELSSSLNITSKDMYTSLIQ 733

Query: 182 LLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
            LC   ++EKA+ L+ ++ R     ++  +  +  G   V + N+AL++   + D G+N
Sbjct: 734 ALCLASQLEKAFELYSEITRKGVVPELSVFVCLIKGLIKVNKWNEALQLCYSICDEGVN 792


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 181/344 (52%), Gaps = 6/344 (1%)

Query: 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK 197
           Q ++  +       G+     ++   +  H  +  +  +NTI++ LCK K +  A +++ 
Sbjct: 162 QVSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYS 221

Query: 198 --VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
             + +G    DV++Y  + +G+C++    +A  +L EM  + +NPN+ T+NI++    + 
Sbjct: 222 EMIVKG-ISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKE 280

Query: 256 GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
           G+++EA      M K   + DV TY +++ G+ +V E+K A+ VF  M   GV P V  Y
Sbjct: 281 GKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCY 340

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
             MI  LCK   V+ A+ +FEEM  K  +P+  TYN +I GLC    +ERA+    RMK+
Sbjct: 341 TNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKE 400

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
              +P+V +Y IL+   C +G +E   E+F+++ +     N+  Y +LI+ +      D+
Sbjct: 401 QGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDE 460

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
            L    L  +M D+G MP   TF+ ++  L        A++ILR
Sbjct: 461 AL---DLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAEKILR 501



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 174/364 (47%), Gaps = 4/364 (1%)

Query: 117 RDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSF 176
           + Y TV +L  + +   + P   T +I+   +        A  +F ++ + G   +  + 
Sbjct: 71  KHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSVFANILKRGFHPNAITL 130

Query: 177 NTILDLLCKEKKVEKA-YNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235
           NT++  LC   +++KA Y   ++    F+ D +SY  + NG C    T     +L+++  
Sbjct: 131 NTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLINGLCKTGETKAVARLLRKLEG 190

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
             + P++  YN ++    +   + +A   + EM  +    DVVTYTT++HGF ++G +K 
Sbjct: 191 HSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKE 250

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
           A ++ + M    + P+V T+N +I  L K+  ++ A ++   M+     P+  TYN +I 
Sbjct: 251 AFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLID 310

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
           G     E++ A      M      P+VQ Y  +I   C    ++  + LFE+M     +P
Sbjct: 311 GYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIP 370

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
           ++ TYN LI  +    K+  L  A  L   M ++G  P  +++  +L+GL   G    AK
Sbjct: 371 DIVTYNSLIDGLC---KNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAK 427

Query: 476 EILR 479
           EI +
Sbjct: 428 EIFQ 431



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 136/291 (46%), Gaps = 4/291 (1%)

Query: 176 FNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           FN IL  L   K      +LFK F       D+ + +++ N +C       A  V   ++
Sbjct: 60  FNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSVFANIL 119

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
            RG +PN  T N ++KG    G+I++A  F  ++  +  ++D V+Y T+++G    GE K
Sbjct: 120 KRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLINGLCKTGETK 179

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
               +   +    V P V  YN +I  LCK   + +A  V+ EM+ KG  P+  TY  +I
Sbjct: 180 AVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLI 239

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
            G C  G ++ A   +  MK     PNV T+NILI      G+++    L   M      
Sbjct: 240 HGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIK 299

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           P++ TYN LI   F+    D++  A  +   M  RG  P    +  ++NGL
Sbjct: 300 PDVFTYNSLIDGYFL---VDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGL 347



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 136/276 (49%), Gaps = 1/276 (0%)

Query: 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
           + P   T+  +   +   G    A  +   M       ++ +FN ++D L KE K+++A 
Sbjct: 228 ISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAK 287

Query: 194 NLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
            L  V  +   K DV +YN + +G+ LV     A  V   M  RG+ P++  Y  ++ G 
Sbjct: 288 ILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGL 347

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
            +   ++EA   F EMK +    D+VTY +++ G      ++RA  +   M   G+ P V
Sbjct: 348 CKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDV 407

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            +Y  ++  LCK   +E+A  +F+ ++ KGY  N   Y V+I  LC  G  + AL+   +
Sbjct: 408 YSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEALDLKSK 467

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           M+D  C P+  T++I+IR   +  E ++  ++  +M
Sbjct: 468 MEDKGCMPDAVTFDIIIRALFEKDENDKAEKILREM 503



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 121/241 (50%), Gaps = 1/241 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  ID  ++    +    L+  M    + P   T+  + + Y    +   A  +F SM
Sbjct: 269 TFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSM 328

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
            + G    +  +  +++ LCK K V++A +LF+  + K    D+++YN + +G C     
Sbjct: 329 AQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHL 388

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A+ + K M ++G+ P++ +Y I+L G  ++G++E+A   F  +  +   ++V  YT +
Sbjct: 389 ERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVL 448

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++     G    A ++   M + G +P   T++ +I+ L +KD  + A  +  EM+ +G 
Sbjct: 449 INRLCKAGFFDEALDLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAEKILREMIARGL 508

Query: 344 M 344
           +
Sbjct: 509 L 509


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 123/427 (28%), Positives = 207/427 (48%), Gaps = 48/427 (11%)

Query: 83  ALKALHFFNILSY-HPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTF 141
            +K   F + L Y +  +  +P +FD    +   +        L+ ++ S  L  T  + 
Sbjct: 169 GVKMTQFTHRLIYTYKYWGPNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSC 228

Query: 142 AIIAERYVSAGKA-DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR 200
                R  +  +  + A+K+F    E+G   +  S+N I+  LC+  KV++A+ L  + +
Sbjct: 229 NAFLSRIANNSEGIEMAIKVFC---EYGISWNTTSYNIIIYSLCRLGKVKEAHRL--LMQ 283

Query: 201 GKFKA---DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL-------- 249
             F++   DV+SY+ + +G+C +    KAL+++ +M  +GL PN  TYN ++        
Sbjct: 284 MDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGK 343

Query: 250 ---------------------------KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
                                       G+F+ G +  A ++F EM  +K   D +TYTT
Sbjct: 344 SFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTT 403

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++ GFG  G++   +N+F  M++ G+ P   TY  +I V CK   + NA  +  EMV  G
Sbjct: 404 LIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMG 463

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
             PN  TY  +I GLC  GE++ A E +  M+    + NV  YN ++   C AG IE+ +
Sbjct: 464 MTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAI 523

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           +L ++M      P+  TY  +I +     +  D+  A KLL EM+DRG  P   TFN ++
Sbjct: 524 KLMKEMEVAGIDPDAITYTTVIDAYC---RLGDIDKAHKLLQEMLDRGLQPTVVTFNVLM 580

Query: 463 NGLLLIG 469
           NG  ++G
Sbjct: 581 NGFCMLG 587



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 155/305 (50%), Gaps = 1/305 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L H M S  L P + T+  + + Y  AG+   A  +   M + G   ++ ++  ++D LC
Sbjct: 420 LFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLC 479

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  +++ A  L    R K  + +V  YN + NG C      +A++++KEM   G++P+  
Sbjct: 480 KHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAI 539

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY  V+  Y R G I++A +   EM  R  +  VVT+  +++GF ++G ++    +   M
Sbjct: 540 TYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWM 599

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           +  G++P   TYN +++  C ++S+     +++ M  +G  P+S TYN++I+G C    +
Sbjct: 600 LEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNL 659

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A      M +    P V +YN LI+ F    +I    ELFE+M     + + + YN  
Sbjct: 660 KEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVADGEIYNFF 719

Query: 424 ISSMF 428
           +   +
Sbjct: 720 VDMCY 724



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 172/346 (49%), Gaps = 4/346 (1%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           +L   RT       M S  + P   T+  + + +   GK      +F  M   G +    
Sbjct: 375 KLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEV 434

Query: 175 SFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           ++ T++D+ CK  ++  A++L  ++ +     ++++Y  + +G C     + A E+L EM
Sbjct: 435 TYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEM 494

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
             +GL  N+  YN ++ G  +AG IE+A +   EM+    + D +TYTT++  +  +G+I
Sbjct: 495 RKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDI 554

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
            +A  +   M++ G+ P+V T+N ++   C    +E+   +   M+ KG +P++ TYN +
Sbjct: 555 DKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTL 614

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           ++  C    M    +   RM++    P+  TYNILI+  C A  ++    L+++M     
Sbjct: 615 MKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGY 674

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
           +P + +YN LI   + +KK   +L A +L  EM   G +     +N
Sbjct: 675 VPTVTSYNALIKRFYKKKK---ILEARELFEEMRGHGLVADGEIYN 717



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 162/340 (47%), Gaps = 6/340 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++  M S  + P    +  +   +   G    A K F  M          ++ T++    
Sbjct: 350 VLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFG 409

Query: 185 KEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           +  KV +  NLF   + RG  K D ++Y  + + +C       A  +  EMV  G+ PN+
Sbjct: 410 QGGKVIEPQNLFHEMISRG-LKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNI 468

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TY  ++ G  + G+++ A     EM+K+  +++V  Y ++V+G    G I++A  +   
Sbjct: 469 VTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKE 528

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M   G+ P   TY  +I   C+   ++ A  + +EM+ +G  P   T+NV++ G C  G 
Sbjct: 529 MEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGM 588

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           +E     +G M +    P+  TYN L++  C    +    +++++M +    P+ +TYNI
Sbjct: 589 LEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNI 648

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           LI       K+ +L  A  L  EM+++G++P   ++N ++
Sbjct: 649 LIKG---HCKARNLKEAWFLYKEMIEKGYVPTVTSYNALI 685



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 153/304 (50%), Gaps = 1/304 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   ID+  +  +    ++L + M  + + P   T+  + +     G+ D A ++   M
Sbjct: 435 TYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEM 494

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRT 223
            + G + ++  +N++++ +CK   +E+A  L K         D I+Y  + + +C +   
Sbjct: 495 RKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDI 554

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           +KA ++L+EM+DRGL P + T+N+++ G+   G +E+  R    M ++    D +TY T+
Sbjct: 555 DKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTL 614

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +    +   +     ++  M N GV P   TYN +I+  CK  +++ A  +++EM+ KGY
Sbjct: 615 MKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGY 674

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
           +P  T+YN +I+      ++  A E    M+      + + YN  +    + G++E  L 
Sbjct: 675 VPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLN 734

Query: 404 LFEK 407
           L ++
Sbjct: 735 LCDE 738



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 129/249 (51%), Gaps = 3/249 (1%)

Query: 230 LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289
           +K   + G++ N T+YNI++    R G+++EA R  ++M  R    DVV+Y+T++ G+  
Sbjct: 246 IKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCH 305

Query: 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
           +GE+K+A  + D M   G+ P+  TYN++I +LCK      A  V  EM+ +  +P++  
Sbjct: 306 LGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVV 365

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
           Y  +I G    G +  A ++   M   +  P+  TY  LI+ F   G++     LF +M 
Sbjct: 366 YTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMI 425

Query: 410 SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
           S    P+  TY  LI    V  K+ +++ A  L  EMV  G  P   T+  +++GL   G
Sbjct: 426 SRGLKPDEVTYTTLID---VYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHG 482

Query: 470 NQGLAKEIL 478
               A E+L
Sbjct: 483 ELDTANELL 491



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 105/218 (48%), Gaps = 1/218 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M+   + P   T+  + + Y   G  D+A K+   M + G + ++ +FN +++  C
Sbjct: 525 LMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFC 584

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
               +E    L   +       D I+YN +    C+    N   ++ K M ++G+ P+  
Sbjct: 585 MLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSN 644

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYNI++KG+ +A  ++EAW  + EM ++     V +Y  ++  F    +I  AR +F+ M
Sbjct: 645 TYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEM 704

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
              G++     YN  + +  ++  VE  + + +E + K
Sbjct: 705 RGHGLVADGEIYNFFVDMCYEEGDVEITLNLCDEAIEK 742


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 123/427 (28%), Positives = 207/427 (48%), Gaps = 48/427 (11%)

Query: 83  ALKALHFFNILSY-HPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTF 141
            +K   F + L Y +  +  +P +FD    +   +        L+ ++ S  L  T  + 
Sbjct: 169 GVKMTQFTHRLIYTYKYWGPNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSC 228

Query: 142 AIIAERYVSAGKA-DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR 200
                R  +  +  + A+K+F    E+G   +  S+N I+  LC+  KV++A+ L  + +
Sbjct: 229 NAFLSRIANNSEGIEMAIKVFC---EYGISWNTTSYNIIIYSLCRLGKVKEAHRL--LMQ 283

Query: 201 GKFKA---DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL-------- 249
             F++   DV+SY+ + +G+C +    KAL+++ +M  +GL PN  TYN ++        
Sbjct: 284 MDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGK 343

Query: 250 ---------------------------KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
                                       G+F+ G +  A ++F EM  +K   D +TYTT
Sbjct: 344 SFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTT 403

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++ GFG  G++   +N+F  M++ G+ P   TY  +I V CK   + NA  +  EMV  G
Sbjct: 404 LIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMG 463

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
             PN  TY  +I GLC  GE++ A E +  M+    + NV  YN ++   C AG IE+ +
Sbjct: 464 MTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAI 523

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           +L ++M      P+  TY  +I +     +  D+  A KLL EM+DRG  P   TFN ++
Sbjct: 524 KLMKEMEVAGIDPDAITYTTVIDAYC---RLGDIDKAHKLLQEMLDRGLQPTVVTFNVLM 580

Query: 463 NGLLLIG 469
           NG  ++G
Sbjct: 581 NGFCMLG 587



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 153/302 (50%), Gaps = 1/302 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L H M S  L P + T+  + + Y  AG+   A  +   M + G   ++ ++  ++D LC
Sbjct: 420 LFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLC 479

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  +++ A  L    R K  + +V  YN + NG C      +A++++KEM   G++P+  
Sbjct: 480 KHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAI 539

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY  V+  Y R G I++A +   EM  R  +  VVT+  +++GF ++G ++    +   M
Sbjct: 540 TYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWM 599

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           +  G++P   TYN +++  C ++S+     +++ M  +G  P+S TYN++I+G C    +
Sbjct: 600 LEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNL 659

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A      M +    P V +YN LI+ F    +     ELFE+M     + + + YN  
Sbjct: 660 KEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVADGEIYNFF 719

Query: 424 IS 425
           + 
Sbjct: 720 VD 721



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 171/346 (49%), Gaps = 4/346 (1%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           +L   RT       M S  + P   T+  + + +   GK      +F  M   G +    
Sbjct: 375 KLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEV 434

Query: 175 SFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           ++ T++D+ CK  ++  A++L  ++ +     ++++Y  + +G C     + A E+L EM
Sbjct: 435 TYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEM 494

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
             +GL  N+  YN ++ G  +AG IE+A +   EM+    + D +TYTT++  +  +G+I
Sbjct: 495 RKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDI 554

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
            +A  +   M++ G+ P+V T+N ++   C    +E+   +   M+ KG +P++ TYN +
Sbjct: 555 DKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTL 614

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           ++  C    M    +   RM++    P+  TYNILI+  C A  ++    L+++M     
Sbjct: 615 MKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGY 674

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
           +P + +YN LI   + ++K  +   A +L  EM   G +     +N
Sbjct: 675 VPTVTSYNALIKRFYKKRKFXE---ARELFEEMRGHGLVADGEIYN 717



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 162/340 (47%), Gaps = 6/340 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++  M S  + P    +  +   +   G    A K F  M          ++ T++    
Sbjct: 350 VLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFG 409

Query: 185 KEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           +  KV +  NLF   + RG  K D ++Y  + + +C       A  +  EMV  G+ PN+
Sbjct: 410 QGGKVIEPQNLFHEMISRG-LKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNI 468

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TY  ++ G  + G+++ A     EM+K+  +++V  Y ++V+G    G I++A  +   
Sbjct: 469 VTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKE 528

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M   G+ P   TY  +I   C+   ++ A  + +EM+ +G  P   T+NV++ G C  G 
Sbjct: 529 MEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGM 588

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           +E     +G M +    P+  TYN L++  C    +    +++++M +    P+ +TYNI
Sbjct: 589 LEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNI 648

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           LI       K+ +L  A  L  EM+++G++P   ++N ++
Sbjct: 649 LIKG---HCKARNLKEAWFLYKEMIEKGYVPTVTSYNALI 685



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 152/304 (50%), Gaps = 1/304 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   ID+  +  +    ++L + M  + + P   T+  + +     G+ D A ++   M
Sbjct: 435 TYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEM 494

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRT 223
            + G + ++  +N++++ +CK   +E+A  L K         D I+Y  + + +C +   
Sbjct: 495 RKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDI 554

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           +KA ++L+EM+DRGL P + T+N+++ G+   G +E+  R    M ++    D +TY T+
Sbjct: 555 DKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTL 614

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +    +   +     ++  M N GV P   TYN +I+  CK  +++ A  +++EM+ KGY
Sbjct: 615 MKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGY 674

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
           +P  T+YN +I+      +   A E    M+      + + YN  +    + G++E  L 
Sbjct: 675 VPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLN 734

Query: 404 LFEK 407
           L ++
Sbjct: 735 LCDE 738



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 129/249 (51%), Gaps = 3/249 (1%)

Query: 230 LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289
           +K   + G++ N T+YNI++    R G+++EA R  ++M  R    DVV+Y+T++ G+  
Sbjct: 246 IKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCH 305

Query: 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
           +GE+K+A  + D M   G+ P+  TYN++I +LCK      A  V  EM+ +  +P++  
Sbjct: 306 LGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVV 365

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
           Y  +I G    G +  A ++   M   +  P+  TY  LI+ F   G++     LF +M 
Sbjct: 366 YTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMI 425

Query: 410 SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
           S    P+  TY  LI    V  K+ +++ A  L  EMV  G  P   T+  +++GL   G
Sbjct: 426 SRGLKPDEVTYTTLID---VYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHG 482

Query: 470 NQGLAKEIL 478
               A E+L
Sbjct: 483 ELDTANELL 491



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 104/218 (47%), Gaps = 1/218 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M+   + P   T+  + + Y   G  D+A K+   M + G + ++ +FN +++  C
Sbjct: 525 LMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFC 584

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
               +E    L   +       D I+YN +    C+    N   ++ K M ++G+ P+  
Sbjct: 585 MLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSN 644

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYNI++KG+ +A  ++EAW  + EM ++     V +Y  ++  F    +   AR +F+ M
Sbjct: 645 TYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEM 704

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
              G++     YN  + +  ++  VE  + + +E + K
Sbjct: 705 RGHGLVADGEIYNFFVDMCYEEGDVEITLNLCDEAIEK 742


>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 114/389 (29%), Positives = 196/389 (50%), Gaps = 13/389 (3%)

Query: 85  KALHFFN-ILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAI 143
           +A   FN ++   PT     SSF+  +   A+++ Y  V +L  RM  + L P   T  I
Sbjct: 75  EAFSVFNHLIDMQPT--PPISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNI 132

Query: 144 IAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGK 202
           +   Y +  K D  + +   M   G   +  +F +++  LC   ++ +A  L  K+ R  
Sbjct: 133 LINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMG 192

Query: 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG------LNPNLTTYNIVLKGYFRAG 256
           ++ +V++Y  + NG C+   T  A+++ +EM++        + PNL  Y  ++    + G
Sbjct: 193 YRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDG 252

Query: 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
            I++    FLEMK R    DVV Y++I+HG    G  + A+ +F+ MV+ GV P+V T+N
Sbjct: 253 LIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFN 312

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
            +I  LCK   +E A  + + M+ +G  P++ TYN +I G C  G ++ A +    M+  
Sbjct: 313 VLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESK 372

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
             E +  +YN+LI  +C +G +    +L+ +M     +P + TYN L++ +F   K  D 
Sbjct: 373 GIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRD- 431

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
             A  L  EM      P   T+N +L+GL
Sbjct: 432 --AWNLFGEMKVHDLTPESCTYNILLDGL 458



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 158/302 (52%), Gaps = 1/302 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L + M    + P   TF ++ +    AGK + A  +   M + G      ++NT++D  C
Sbjct: 295 LFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFC 354

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            E +++ A +LF     K  + D +SYNV+ NG+C   R  +A ++ +EM+ + + P + 
Sbjct: 355 LEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVI 414

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN +L G FR G++ +AW  F EMK      +  TY  ++ G      +  A  +F  +
Sbjct: 415 TYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYL 474

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            N    PS+  +N +I  LCK   +E A  +F  +  +G  PN  TY V+I GLC +G++
Sbjct: 475 ENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQL 534

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           E A +    M++  C PN+ T+N L+R FC   E+++ +EL ++M      P+  T +I+
Sbjct: 535 ENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIV 594

Query: 424 IS 425
           + 
Sbjct: 595 VD 596



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 175/336 (52%), Gaps = 4/336 (1%)

Query: 131 SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190
            +++ P    +  I +     G  D+  ++FL M   G    + ++++I+  +C   + E
Sbjct: 231 GVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWE 290

Query: 191 KAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL 249
            A  LF ++       +V+++NV+ +  C   +  +A  +LK M+ RG +P+  TYN ++
Sbjct: 291 GAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLI 350

Query: 250 KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
            G+   G+I++A   F+ M+ +  E D V+Y  +++G+   G +  A+ ++  M+   ++
Sbjct: 351 DGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIM 410

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           P+V TYN ++  L ++  V +A  +F EM      P S TYN+++ GLC    +  A+E 
Sbjct: 411 PTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMEL 470

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
              +++ + +P++Q +N LI   C A +IE   ELF ++      PN+ TY ++I  +  
Sbjct: 471 FHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLC- 529

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
             KS  L  A  L + M ++G  P   TFN ++ G 
Sbjct: 530 --KSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGF 563



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/391 (28%), Positives = 186/391 (47%), Gaps = 18/391 (4%)

Query: 100 AHSP-----SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKA 154
            HSP     +S    + L +R+ +      L+ +M  +   P   T+  +       G  
Sbjct: 157 GHSPNTVTFTSLVKGLCLGSRISE---ATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNT 213

Query: 155 DRAVKIFLSM-HEHG-----CRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADV 207
             AVK+   M + +G      + +L  + TI+D LCK+  ++K   LF   +G+    DV
Sbjct: 214 MLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDV 273

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           ++Y+ I +G C   R   A  +  EMVD G++PN+ T+N+++    +AG++EEA      
Sbjct: 274 VAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKL 333

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M +R    D  TY T++ GF + G I  AR++F  M + G+     +YN +I   CK   
Sbjct: 334 MIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGR 393

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
           +  A  ++ EM+ K  MP   TYN ++ GL   G++  A    G MK  +  P   TYNI
Sbjct: 394 MVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNI 453

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           L+   C    +   +ELF  + +    P++  +N LI  +   +K +   +A +L   + 
Sbjct: 454 LLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIE---IARELFNRLS 510

Query: 448 DRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
             G  P   T+  +++GL   G    AK++ 
Sbjct: 511 HEGLEPNVITYTVMIHGLCKSGQLENAKDLF 541



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 161/334 (48%), Gaps = 10/334 (2%)

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYN 211
           K   A  +F  + +      ++SFNT+L  + K K+     +L+K         D I+ N
Sbjct: 72  KRSEAFSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLN 131

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
           ++ N +C + + +  L VL EM+ RG +PN  T+  ++KG     +I EA     +M + 
Sbjct: 132 ILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRM 191

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG------VLPSVATYNAMIQVLCKK 325
               +VVTY T+++G  + G    A  + + M+NG       + P++  Y  +I  LCK 
Sbjct: 192 GYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKD 251

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
             ++    +F EM G+G  P+   Y+ +I G+CHTG  E A      M D+   PNV T+
Sbjct: 252 GLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTF 311

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           N+LI   C AG++E    L + M      P+  TYN LI    +  + DD   A  L + 
Sbjct: 312 NVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDD---ARDLFVS 368

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           M  +G      ++N ++NG    G    AK++ R
Sbjct: 369 MESKGIETDAVSYNVLINGYCKSGRMVEAKKLYR 402



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 133/285 (46%), Gaps = 24/285 (8%)

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF--LEMKKRKCEI-- 275
           +KR+ +A  V   ++D    P ++++N +L      G + +  R+F  + + KR   I  
Sbjct: 71  IKRS-EAFSVFNHLIDMQPTPPISSFNTLL------GAVAKIKRYFDVISLYKRMSLIGL 123

Query: 276 --DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
             D +T   +++ +  + ++     V   M+  G  P+  T+ ++++ LC    +  A  
Sbjct: 124 APDFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATG 183

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE------CEPNVQTYNI 387
           +  +MV  GY PN  TY  ++ GLC TG    A++    M +         +PN+  Y  
Sbjct: 184 LLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCT 243

Query: 388 LIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
           +I   C  G I++G ELF +M G G+  P++  Y+ +I  M    + +    A  L  EM
Sbjct: 244 IIDSLCKDGLIDKGKELFLEMKGRGIS-PDVVAYSSIIHGMCHTGRWEG---AKGLFNEM 299

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           VD G  P   TFN +++ L   G    A  +L+L  + G  P  F
Sbjct: 300 VDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTF 344



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 83/166 (50%), Gaps = 1/166 (0%)

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
           R  W L   MK   L P   T+ I+ +          A+++F  +  H  + S+  FN +
Sbjct: 430 RDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCL 489

Query: 180 LDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           +D LCK +K+E A  LF ++     + +VI+Y V+ +G C   +   A ++   M ++G 
Sbjct: 490 IDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGC 549

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
            PNL T+N +++G+ +  ++++      EM ++    D  T + +V
Sbjct: 550 APNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIVV 595



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 113/239 (47%), Gaps = 19/239 (7%)

Query: 249 LKGYFRAGQIE--EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV---FDGM 303
           LK   ++G I+  EA+  F  +   +    + ++ T++   G V +IKR  +V   +  M
Sbjct: 62  LKSNCKSGHIKRSEAFSVFNHLIDMQPTPPISSFNTLL---GAVAKIKRYFDVISLYKRM 118

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G+ P   T N +I   C  + V+  + V  EM+ +G+ PN+ T+  +++GLC    +
Sbjct: 119 SLIGLAPDFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRI 178

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-----GSGVCL-PNL 417
             A   + +M      PNV TY  L+   C  G     ++L E+M     G GV + PNL
Sbjct: 179 SEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNL 238

Query: 418 DTYNILISSMFVRKKSDDLLVAGK-LLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
             Y  +I S+      D L+  GK L +EM  RG  P    ++ +++G+   G    AK
Sbjct: 239 VCYCTIIDSLC----KDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAK 293



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 4/146 (2%)

Query: 71  LVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMK 130
           L+D + K   NH  +A+  F+ L  H  +  S   F+  ID   + R       L +R+ 
Sbjct: 454 LLDGLCKN--NHLSEAMELFHYLENH-DFQPSIQIFNCLIDGLCKARKIEIARELFNRLS 510

Query: 131 SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190
              L P   T+ ++      +G+ + A  +FL M E GC  +L +FNT++   C+  +++
Sbjct: 511 HEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQ 570

Query: 191 KAYNLFKVFRGK-FKADVISYNVIAN 215
           K   L +    K F  D  + +++ +
Sbjct: 571 KVVELLQEMAEKDFSPDASTISIVVD 596


>gi|356522850|ref|XP_003530056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 109/347 (31%), Positives = 185/347 (53%), Gaps = 14/347 (4%)

Query: 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK 197
           Q ++  +       G+   A+++   +       ++  +NTI+D LCK K V +A NLF 
Sbjct: 168 QVSYGTLINGVCKIGETRAAIQLLRRIDGRLTEPNVVMYNTIIDCLCKRKLVSEACNLFS 227

Query: 198 VFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256
               K   A+V++Y+ I +G+C+V +  +AL  L EMV + +NP++  YN ++    + G
Sbjct: 228 EMSVKGISANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKAINPDVYIYNTLVDALHKEG 287

Query: 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
           +++EA      + K   + +V+TY T++ G+        A++VF+ +   GV P V +YN
Sbjct: 288 KVKEAKNVLAVIVKTCLKPNVITYNTLIDGY--------AKHVFNAVGLMGVTPDVWSYN 339

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
            MI  LCK   VE A+ +++EM  K  +PN+ TYN +I GLC +G +  A + +  M D 
Sbjct: 340 IMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDR 399

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
               NV TYN LI   C  G++++ + L  KM      P++ T NIL+  +  + K   L
Sbjct: 400 GHHANVITYNSLINGLCKNGQLDKAIALINKMKDQGIQPDMYTLNILLHGLLCKGKR--L 457

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
             A  L  +++D+G+ P  +T+N ++ G      +GL  E   LQS+
Sbjct: 458 KNAQGLFQDLLDKGYHPNVYTYNIIIYGHC---KEGLLDEAYALQSK 501



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 158/332 (47%), Gaps = 29/332 (8%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           ++  ID   + +       L   M    +     T++ I   +   GK   A+     M 
Sbjct: 206 YNTIIDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEALGFLNEMV 265

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--------------------RGKFKA 205
                  +  +NT++D L KE KV++A N+  V                     +  F A
Sbjct: 266 LKAINPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGYAKHVFNA 325

Query: 206 --------DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
                   DV SYN++ N  C +KR  +AL + KEM  + + PN  TYN ++ G  ++G+
Sbjct: 326 VGLMGVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGR 385

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           I  AW    EM  R    +V+TY ++++G    G++ +A  + + M + G+ P + T N 
Sbjct: 386 ISYAWDLIDEMHDRGHHANVITYNSLINGLCKNGQLDKAIALINKMKDQGIQPDMYTLNI 445

Query: 318 MIQ-VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
           ++  +LCK   ++NA  +F++++ KGY PN  TYN++I G C  G ++ A     +M+D 
Sbjct: 446 LLHGLLCKGKRLKNAQGLFQDLLDKGYHPNVYTYNIIIYGHCKEGLLDEAYALQSKMEDS 505

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            C PN  T+ I+I    + GE ++  +L  +M
Sbjct: 506 GCSPNAITFKIIICALLEKGETDKAEKLLCEM 537



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 106/207 (51%), Gaps = 2/207 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S++  I+   +++       L   M   ++ P   T+  + +    +G+   A  +   M
Sbjct: 337 SYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEM 396

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGW-CLVKR 222
           H+ G   ++ ++N++++ LCK  +++KA  L    + +  + D+ + N++ +G  C  KR
Sbjct: 397 HDRGHHANVITYNSLINGLCKNGQLDKAIALINKMKDQGIQPDMYTLNILLHGLLCKGKR 456

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
              A  + ++++D+G +PN+ TYNI++ G+ + G ++EA+    +M+   C  + +T+  
Sbjct: 457 LKNAQGLFQDLLDKGYHPNVYTYNIIIYGHCKEGLLDEAYALQSKMEDSGCSPNAITFKI 516

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVL 309
           I+      GE  +A  +   M+  G+L
Sbjct: 517 IICALLEKGETDKAEKLLCEMIARGLL 543



 Score = 45.8 bits (107), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 67/155 (43%), Gaps = 5/155 (3%)

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
           ++V++A+  F  M+   + P    +N ++            +    R++    +P+  T 
Sbjct: 42  ENVDDALFQFHRMLCMRHTPPIIQFNKILDSFAKMKHYPTVVSLSRRLELKAIQPDFFTL 101

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL-VAGKLLI 444
           NILI  FC  G+I     +  K+      P+  T   LI  + ++ +    L    KLL 
Sbjct: 102 NILINCFCHLGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALHFHDKLLA 161

Query: 445 EMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           +    GF   + ++  ++NG+  IG    A ++LR
Sbjct: 162 Q----GFRLDQVSYGTLINGVCKIGETRAAIQLLR 192


>gi|357505557|ref|XP_003623067.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498082|gb|AES79285.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 132/463 (28%), Positives = 227/463 (49%), Gaps = 29/463 (6%)

Query: 41  AALASLILTSTDPRTLTQT--LHCPSLHW----TPQLVDQIIKRLWNHALKALHFFNILS 94
           A  A+++  +T   +L Q+  +  P   W     P+L+  +I R  +       F +  +
Sbjct: 15  AISAAIVANTTTTPSLPQSYKIQPPIKPWPHRLNPKLLSSLISRQHDPHFSLQIFLHAQN 74

Query: 95  YH-PTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPT----QKTFAIIAERYV 149
           +H P ++H+P ++       ++ R +  + +L+  ++S    P     ++    +   Y 
Sbjct: 75  HHKPPFSHNPQTYQAIFLKLSKFRCFSEIESLLAGLRS---SPPHCCGEEPIVTVIRGYG 131

Query: 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA--DV 207
            AGK  RA+K FL +   G R S+ S N +L+ L + K+   A+ +FK    +F+   +V
Sbjct: 132 LAGKPVRALKTFLRIESFGIRPSVRSINALLNSLVQNKRYRLAFLVFKNCGERFRVLPNV 191

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           +S N++    C       A++VL EM   GL PN+ +Y  VL G+   G ++ A + F E
Sbjct: 192 VSCNILLKALCKGNEVEVAVKVLDEMPGMGLVPNVVSYTTVLGGFVWRGDMDGAMKVFRE 251

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           +  R    DV +YT +V GF  +G++  A  V D M + GV P+  TY  MIQ  CK+  
Sbjct: 252 VLDRGWSPDVTSYTVLVDGFCRLGKLVDAIRVMDIMEDNGVEPNEVTYGVMIQAYCKEKK 311

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN-VQTYN 386
              A+ + E+M+ K  +  S     V+  LC  G +E+A E    +    C  N     +
Sbjct: 312 SGEAVNLIEDMIAKDLVVGSELCCKVVDLLCEEGNVEKACEMWRMVSRKNCGLNGAVVVS 371

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            LI + C  G++     +F++ G G  + +L TYN LI+ +    +  +L  A +L  +M
Sbjct: 372 TLIHWLCKKGKVLEARNVFDEFGKG-SVASLLTYNTLIAGLC---EGGELCEAARLWDDM 427

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR-----LQSRC 484
           V++G  P  FT+N ++ G   +GN   AKE +R     L++RC
Sbjct: 428 VEKGVAPNAFTYNMLIKGFCKVGN---AKEGIRVLEEMLENRC 467



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 125/282 (44%), Gaps = 36/282 (12%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++  M  + L P   ++  +   +V  G  D A+K+F  + + G    + S+  ++D  C
Sbjct: 213 VLDEMPGMGLVPNVVSYTTVLGGFVWRGDMDGAMKVFREVLDRGWSPDVTSYTVLVDGFC 272

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           +  K+  A  +  +      + + ++Y V+   +C  K++ +A+ ++++M+ + L     
Sbjct: 273 RLGKLVDAIRVMDIMEDNGVEPNEVTYGVMIQAYCKEKKSGEAVNLIEDMIAKDLVVGSE 332

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID-VVTYTTIVHGFGVVGEIKRARNVFD- 301
               V+      G +E+A   +  + ++ C ++  V  +T++H     G++  ARNVFD 
Sbjct: 333 LCCKVVDLLCEEGNVEKACEMWRMVSRKNCGLNGAVVVSTLIHWLCKKGKVLEARNVFDE 392

Query: 302 ---------------------------------GMVNGGVLPSVATYNAMIQVLCKKDSV 328
                                             MV  GV P+  TYN +I+  CK  + 
Sbjct: 393 FGKGSVASLLTYNTLIAGLCEGGELCEAARLWDDMVEKGVAPNAFTYNMLIKGFCKVGNA 452

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           +  I V EEM+    +PN +TY ++I G+   G M++ +  V
Sbjct: 453 KEGIRVLEEMLENRCLPNKSTYTILIDGILLLGGMKQEINKV 494


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 199/385 (51%), Gaps = 4/385 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  I++  +    +     +  M++L + P   T+  I   +   GK  RA  IF +M
Sbjct: 218 TFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTM 277

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
            + G      ++N+ +  LCKE ++E+A  L  K+  G    + ++YN + +G+C     
Sbjct: 278 KDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDL 337

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           +KA     EM+ +G+  +L TYN+ +   F  G++ +A     EM+++    D VT+  +
Sbjct: 338 DKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNIL 397

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++G+   G+ KRA  + D MV  G+ P++ TY ++I VL K++ ++ A  +F ++  +G 
Sbjct: 398 INGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGL 457

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
           +P+   +N +I G C  G ++RA + +  M + +  P+  TYN L++ +C  G++E   +
Sbjct: 458 LPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQ 517

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           L ++M      P+  +YN LIS      K  D+  A ++  EM+  GF P   T+N ++ 
Sbjct: 518 LLDEMKRRGIKPDHISYNTLISGY---SKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQ 574

Query: 464 GLLLIGNQGLAKEILRLQSRCGRLP 488
           GL        A+E+L+     G  P
Sbjct: 575 GLCKNQEGEHAEELLKEMVSKGITP 599



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 119/433 (27%), Positives = 201/433 (46%), Gaps = 19/433 (4%)

Query: 69  PQLVDQIIKRLWNHALK---ALHFFNILSYHPTYAHSPSSFDHAIDLAARLR-----DYR 120
           PQLV  ++  L NH      A     I   +   +  PS     I+L  RL        R
Sbjct: 74  PQLVLHLLSHLQNHPHSLDLATSSLAICVLYRLPSPKPS-----INLIQRLILSPTCTNR 128

Query: 121 TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180
           T++  +   +      T   F ++   Y    K + A++ F  + E G   ++ + N +L
Sbjct: 129 TIFDELALARDRVDAKTTLIFDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQML 188

Query: 181 DLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
            L  K  + + A+ L+ ++FR   ++ + ++N++ N  C   +  KA E +  M   G+ 
Sbjct: 189 SLFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVK 248

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           PN+ TYN ++ G+   G+ + A   F  MK +  E D  TY + + G    G ++ A  +
Sbjct: 249 PNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGL 308

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
              M+ GG++P+  TYNA+I   C K  ++ A    +EM+ KG M +  TYN+ I  L  
Sbjct: 309 ICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFM 368

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGVCLPNLD 418
            G M  A   +  M++    P+  T+NILI  +C  G+ +R   L ++M G G+  P L 
Sbjct: 369 EGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGI-QPTLV 427

Query: 419 TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           TY  LI   +V  K + +  A  L  ++   G +P    FN +++G    GN   A ++L
Sbjct: 428 TYTSLI---YVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLL 484

Query: 479 RLQSRCGRLPRQF 491
           +       LP + 
Sbjct: 485 KEMDNMKVLPDEI 497



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 151/313 (48%), Gaps = 4/313 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+ +M    L P   T+  + + Y + G  D+A      M   G   SL ++N  +  L 
Sbjct: 308 LICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALF 367

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            E ++  A N+ K  R K    D +++N++ NG+C      +A  +L EMV +G+ P L 
Sbjct: 368 MEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLV 427

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY  ++    +  +++EA   F ++++     D++ +  ++ G    G I RA  +   M
Sbjct: 428 TYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEM 487

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            N  VLP   TYN ++Q  C++  VE A  + +EM  +G  P+  +YN +I G    G+M
Sbjct: 488 DNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDM 547

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A      M     +P + TYN LI+  C   E E   EL ++M S    P+  TY  +
Sbjct: 548 KDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPDDSTYLSI 607

Query: 424 ISSMFVRKKSDDL 436
           I +M   +  DDL
Sbjct: 608 IEAM---ETVDDL 617



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 143/260 (55%), Gaps = 4/260 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           F HA+ +  R+ D      ++  M+   + P   T  I+   Y   G A RA  +   M 
Sbjct: 362 FIHALFMEGRMGD---ADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMV 418

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTN 224
             G + +L ++ +++ +L K  ++++A  LF K+ +     D+I +N + +G C     +
Sbjct: 419 GKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNID 478

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           +A ++LKEM +  + P+  TYN +++GY R G++EEA +   EMK+R  + D ++Y T++
Sbjct: 479 RAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLI 538

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            G+   G++K A  V D M+  G  P++ TYNA+IQ LCK    E+A  + +EMV KG  
Sbjct: 539 SGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGIT 598

Query: 345 PNSTTYNVVIRGLCHTGEME 364
           P+ +TY  +I  +    ++E
Sbjct: 599 PDDSTYLSIIEAMETVDDLE 618


>gi|334187687|ref|NP_197005.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635761|sp|Q9LFQ4.2|PP383_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g15010, mitochondrial; Flags: Precursor
 gi|332004721|gb|AED92104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 572

 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 118/421 (28%), Positives = 201/421 (47%), Gaps = 10/421 (2%)

Query: 37  AADPAALASLILT-STDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSY 95
           + D   ++ L+    +D + L   L    +  + +LV +I+ R+ N    A  FF     
Sbjct: 94  SEDVGKISKLVKDCGSDRKELRNKLEECDVKPSNELVVEILSRVRNDWETAFTFFVWAGK 153

Query: 96  HPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLG-PTQKTFAIIAERYVSAGKA 154
              Y  S   +   I +  ++R + T WTL+  M+  S      +T  I+  +Y +    
Sbjct: 154 QQGYVRSVREYHSMISILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKYCAVHDV 213

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIA 214
            +A+  F +         ++ F ++L  LC+ K V  A +L    + K+  D  S+N++ 
Sbjct: 214 GKAINTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDKYPFDAKSFNIVL 273

Query: 215 NGWC-LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
           NGWC ++    +A  V  EM + G+  ++ +Y+ ++  Y + G + +  + F  MKK   
Sbjct: 274 NGWCNVIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECI 333

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGM-VNGGVLPSVATYNAMIQVLCKKDSVENAI 332
           E D   Y  +VH       +  ARN+   M    G+ P+V TYN++I+ LCK    E A 
Sbjct: 334 EPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAK 393

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
            VF+EM+ KG  P   TY+  +R L  TG  E   E + +M+   CEP V+TY +LIR  
Sbjct: 394 QVFDEMLEKGLFPTIRTYHAFMRIL-RTG--EEVFELLAKMRKMGCEPTVETYIMLIRKL 450

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
           C   + +  L L+++M      P+L +Y ++I  +F+  K ++   A     EM D+G  
Sbjct: 451 CRWRDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEE---AYGYYKEMKDKGMR 507

Query: 453 P 453
           P
Sbjct: 508 P 508



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/245 (21%), Positives = 105/245 (42%), Gaps = 7/245 (2%)

Query: 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           H   S+   I   ++      V  L  RMK   + P +K +  +      A     A  +
Sbjct: 300 HDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECIEPDRKVYNAVVHALAKASFVSEARNL 359

Query: 161 FLSMHEH-GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGW 217
             +M E  G   ++ ++N+++  LCK +K E+A  +F     +G F   + +Y+      
Sbjct: 360 MKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDEMLEKGLFPT-IRTYHAFMR-- 416

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
            +++   +  E+L +M   G  P + TY ++++   R    +     + EMK++    D+
Sbjct: 417 -ILRTGEEVFELLAKMRKMGCEPTVETYIMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDL 475

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
            +Y  ++HG  + G+I+ A   +  M + G+ P+    + +      K   E  I   + 
Sbjct: 476 SSYIVMIHGLFLNGKIEEAYGYYKEMKDKGMRPNENVEDMIQSWFSGKQYAEQRITDSKG 535

Query: 338 MVGKG 342
            V KG
Sbjct: 536 EVNKG 540


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 116/400 (29%), Positives = 201/400 (50%), Gaps = 21/400 (5%)

Query: 85  KALHFFNILSYHPTYAHSPSSFD--------HAIDLAARLRDYRTVWTLVHRMKSLSLGP 136
           KA  F + L Y  T A +  + D         A+  + R+ +   ++  +H   S    P
Sbjct: 77  KAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMH--TSSQCLP 134

Query: 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF 196
              T+  +       GK DRA+++   M+E GC  ++ +++ +++ LCK  + +K + L 
Sbjct: 135 NVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLL 194

Query: 197 K-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
           + + R  F+ DVI YN + NG C  +R ++ALE+++ M+  G  P + TYN +++ + R+
Sbjct: 195 QEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRS 254

Query: 256 GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
            Q++ A+R    M +R C  DV+ Y T++ G      +  A+ +   MV    +P V TY
Sbjct: 255 KQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITY 314

Query: 316 NAMIQVLCKKDSV------ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           + +I  LCK   V      E A  + E M   G  PN+ TY VVI GLC   + ++AL  
Sbjct: 315 STIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALAL 374

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
           + RM D E  P++ +++++I   C + +++   ++F  M    C PN   Y  LI  +  
Sbjct: 375 LRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSK 434

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
             + D  +   +L++E     F P   T+N VL+GL  +G
Sbjct: 435 GGEVDKAVRVFELMVE----SFRPGVATYNSVLDGLCGVG 470



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 168/319 (52%), Gaps = 8/319 (2%)

Query: 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADV 207
           V AG+  +AV++F    E  C  +  ++ +++  LCK  K+++AY L    R +     V
Sbjct: 9   VRAGQHGQAVQLF---REERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGV 65

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
             +N +  G C   R   AL   K +      P++ T+NI++    ++G++EEA++ F  
Sbjct: 66  AVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFES 125

Query: 268 M-KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           M    +C  +VVTYTT+++G    G++ RA  + D M   G  P+V TY+ +++ LCK  
Sbjct: 126 MHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAG 185

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
             +    + +EM  +G+ P+   YN ++ GLC +  ++ ALE V  M    C P V TYN
Sbjct: 186 RTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYN 245

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            L+  FC + +++R   L + M    C P++  YN +I+ +    + DD   A  LL +M
Sbjct: 246 SLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDD---AQALLKQM 302

Query: 447 VDRGFMPRKFTFNRVLNGL 465
           V    +P   T++ +++GL
Sbjct: 303 VAARCVPDVITYSTIIDGL 321



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 181/370 (48%), Gaps = 14/370 (3%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
            S  H +  A +L      + L+  M+   + P       +      AG+   A+  F +
Sbjct: 34  GSLIHGLCKAGKLDQ---AYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKT 90

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA--DVISYNVIANGWCLVK 221
           +    C   + +FN ++D L K  +VE+A+ +F+      +   +V++Y  + NG C   
Sbjct: 91  VAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDG 150

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
           + ++A+E+L  M + G  PN+ TY+++++G  +AG+ ++ +    EM +R  + DV+ Y 
Sbjct: 151 KLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYN 210

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
           T+++G      +  A  +   M+  G  P+V TYN+++++ C+   V+ A  + + M  +
Sbjct: 211 TLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSER 270

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC-----DAG 396
           G  P+   YN VI GLC    ++ A   + +M    C P+V TY+ +I   C     DA 
Sbjct: 271 GCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDAD 330

Query: 397 -EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
            ++E   E+ E M    C PN  TY ++I  +   +KS   L    LL  M+D   +P  
Sbjct: 331 WKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALA---LLRRMIDSEVVPDL 387

Query: 456 FTFNRVLNGL 465
            +F+ V+  L
Sbjct: 388 SSFSMVIGSL 397



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 107/398 (26%), Positives = 184/398 (46%), Gaps = 16/398 (4%)

Query: 56  LTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSS--FDHAIDLA 113
           + +T  CP++     LV+ + K     A +    F +L         P    ++  ++  
Sbjct: 162 MNETGCCPNVITYSVLVEGLCK-----AGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGL 216

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            + R       LV  M      PT  T+  + E +  + + DRA ++   M E GC   +
Sbjct: 217 CKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDV 276

Query: 174 NSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNK------A 226
            ++NT++  LC++ +++ A  L K +   +   DVI+Y+ I +G C   R +       A
Sbjct: 277 INYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAA 336

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
            E+L+ M   G  PN  TY +V++G  RA + ++A      M   +   D+ +++ ++  
Sbjct: 337 CEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGS 396

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
                ++  A  +F  M      P+   Y A+I  L K   V+ A+ VFE MV + + P 
Sbjct: 397 LCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMV-ESFRPG 455

Query: 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
             TYN V+ GLC  G +E A+  V  M   EC P+  +Y  LIR  C    +E   ELF+
Sbjct: 456 VATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQ 515

Query: 407 KMGSGVCLPNLDTYNILISSMFVRKK-SDDLLVAGKLL 443
            + +      +  YN+L++ +  +K+ SD   VA KL+
Sbjct: 516 AVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLI 553



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 125/244 (51%), Gaps = 7/244 (2%)

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           N  L    RAGQ  +A + F   ++ +C  +  TY +++HG    G++ +A  + D M +
Sbjct: 2   NCALNLLVRAGQHGQAVQLF---REERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRD 58

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G+ P VA +N +I+ LCK     +A+  F+ + G    P+  T+N+++  L  +G +E 
Sbjct: 59  RGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEE 118

Query: 366 ALEFVGRM-KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
           A +    M    +C PNV TY  +I   C  G+++R +EL + M    C PN+ TY++L+
Sbjct: 119 AFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLV 178

Query: 425 SSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484
             +    ++D       LL EM  RGF P    +N +LNGL        A E+++L  R 
Sbjct: 179 EGLCKAGRTDKGFT---LLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRS 235

Query: 485 GRLP 488
           G  P
Sbjct: 236 GCYP 239



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 106/220 (48%), Gaps = 2/220 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++  MK     P   T+A++ E    A K+ +A+ +   M +      L+SF+ ++  LC
Sbjct: 339 ILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLC 398

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K   ++ AY +F +   +  K + ++Y  + +G       +KA+ V + MV+    P + 
Sbjct: 399 KSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVE-SFRPGVA 457

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN VL G    G+IEEA R    M  ++C  D  +Y  ++ G   V  ++ A  +F  +
Sbjct: 458 TYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAV 517

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
              G    V  YN ++  LCKK  + +A  V  +++  GY
Sbjct: 518 EAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAGY 557



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 103/219 (47%), Gaps = 2/219 (0%)

Query: 91  NILSYHPTYAHSPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERY 148
            IL         P++  +A  I+   R R  +    L+ RM    + P   +F+++    
Sbjct: 338 EILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSL 397

Query: 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVI 208
             +   D A KIF  M E  C+ +  ++  ++D L K  +V+KA  +F++    F+  V 
Sbjct: 398 CKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVA 457

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           +YN + +G C V R  +A+ +++ M+ +   P+  +Y  +++G  R   +EEA+  F  +
Sbjct: 458 TYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAV 517

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           + +   ++V  Y  +V+       +  A  V + ++  G
Sbjct: 518 EAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAG 556


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 116/400 (29%), Positives = 201/400 (50%), Gaps = 21/400 (5%)

Query: 85  KALHFFNILSYHPTYAHSPSSFD--------HAIDLAARLRDYRTVWTLVHRMKSLSLGP 136
           KA  F + L Y  T A +  + D         A+  + R+ +   ++  +H   S    P
Sbjct: 77  KAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMH--TSSQCLP 134

Query: 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF 196
              T+  +       GK DRA+++   M+E GC  ++ +++ +++ LCK  + +K + L 
Sbjct: 135 NVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLL 194

Query: 197 K-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
           + + R  F+ DVI YN + NG C  +R ++ALE+++ M+  G  P + TYN +++ + R+
Sbjct: 195 QEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRS 254

Query: 256 GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
            Q++ A+R    M +R C  DV+ Y T++ G      +  A+ +   MV    +P V TY
Sbjct: 255 KQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITY 314

Query: 316 NAMIQVLCKKDSV------ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           + +I  LCK   V      E A  + E M   G  PN+ TY VVI GLC   + ++AL  
Sbjct: 315 STIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALAL 374

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
           + RM D E  P++ +++++I   C + +++   ++F  M    C PN   Y  LI  +  
Sbjct: 375 LRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSK 434

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
             + D  +   +L++E     F P   T+N VL+GL  +G
Sbjct: 435 GGEVDKAVRVFELMVE----SFRPGVATYNSVLDGLCGVG 470



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 168/319 (52%), Gaps = 8/319 (2%)

Query: 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADV 207
           V AG+  +AV++F    E  C  +  ++ +++  LCK  K+++AY L    R +     V
Sbjct: 9   VRAGQHGQAVQLF---REERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGV 65

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
             +N +  G C   R   AL   K +      P++ T+NI++    ++G++EEA++ F  
Sbjct: 66  AVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFES 125

Query: 268 M-KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           M    +C  +VVTYTT+++G    G++ RA  + D M   G  P+V TY+ +++ LCK  
Sbjct: 126 MHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAG 185

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
             +    + +EM  +G+ P+   YN ++ GLC +  ++ ALE V  M    C P V TYN
Sbjct: 186 RTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYN 245

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            L+  FC + +++R   L + M    C P++  YN +I+ +    + DD   A  LL +M
Sbjct: 246 SLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDD---AQALLKQM 302

Query: 447 VDRGFMPRKFTFNRVLNGL 465
           V    +P   T++ +++GL
Sbjct: 303 VAARCVPDVITYSTIIDGL 321



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 182/370 (49%), Gaps = 14/370 (3%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
            S  H +  A +L      + L+  M+   + P       + +    AG+   A+  F +
Sbjct: 34  GSLIHGLCKAGKLDQ---AYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKT 90

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA--DVISYNVIANGWCLVK 221
           +    C   + +FN ++D L K  +VE+A+ +F+      +   +V++Y  + NG C   
Sbjct: 91  VAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDG 150

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
           + ++A+E+L  M + G  PN+ TY+++++G  +AG+ ++ +    EM +R  + DV+ Y 
Sbjct: 151 KLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYN 210

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
           T+++G      +  A  +   M+  G  P+V TYN+++++ C+   V+ A  + + M  +
Sbjct: 211 TLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSER 270

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC-----DAG 396
           G  P+   YN VI GLC    ++ A   + +M    C P+V TY+ +I   C     DA 
Sbjct: 271 GCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDAD 330

Query: 397 -EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
            ++E   E+ E M    C PN  TY ++I  +   +KS   L    LL  M+D   +P  
Sbjct: 331 WKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALA---LLRRMIDSEVVPDL 387

Query: 456 FTFNRVLNGL 465
            +F+ V+  L
Sbjct: 388 SSFSMVIGSL 397



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 107/398 (26%), Positives = 184/398 (46%), Gaps = 16/398 (4%)

Query: 56  LTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSS--FDHAIDLA 113
           + +T  CP++     LV+ + K     A +    F +L         P    ++  ++  
Sbjct: 162 MNETGCCPNVITYSVLVEGLCK-----AGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGL 216

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            + R       LV  M      PT  T+  + E +  + + DRA ++   M E GC   +
Sbjct: 217 CKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDV 276

Query: 174 NSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNK------A 226
            ++NT++  LC++ +++ A  L K +   +   DVI+Y+ I +G C   R +       A
Sbjct: 277 INYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAA 336

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
            E+L+ M   G  PN  TY +V++G  RA + ++A      M   +   D+ +++ ++  
Sbjct: 337 CEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGS 396

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
                ++  A  +F  M      P+   Y A+I  L K   V+ A+ VFE MV + + P 
Sbjct: 397 LCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMV-ESFRPG 455

Query: 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
             TYN V+ GLC  G +E A+  V  M   EC P+  +Y  LIR  C    +E   ELF+
Sbjct: 456 VATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQ 515

Query: 407 KMGSGVCLPNLDTYNILISSMFVRKK-SDDLLVAGKLL 443
            + +      +  YN+L++ +  +K+ SD   VA KL+
Sbjct: 516 AVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLI 553



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 125/244 (51%), Gaps = 7/244 (2%)

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           N  L    RAGQ  +A + F   ++ +C  +  TY +++HG    G++ +A  + D M +
Sbjct: 2   NCALNLLVRAGQHGQAVQLF---REERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRD 58

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G+ P VA +N +I+ LCK     +A+  F+ + G    P+  T+N+++  L  +G +E 
Sbjct: 59  RGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEE 118

Query: 366 ALEFVGRM-KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
           A +    M    +C PNV TY  +I   C  G+++R +EL + M    C PN+ TY++L+
Sbjct: 119 AFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLV 178

Query: 425 SSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484
             +    ++D       LL EM  RGF P    +N +LNGL        A E+++L  R 
Sbjct: 179 EGLCKAGRTDKGFT---LLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRS 235

Query: 485 GRLP 488
           G  P
Sbjct: 236 GCYP 239



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 106/220 (48%), Gaps = 2/220 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++  MK     P   T+A++ E    A K+ +A+ +   M +      L+SF+ ++  LC
Sbjct: 339 ILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLC 398

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K   ++ AY +F +   +  K + ++Y  + +G       +KA+ V + MV+    P + 
Sbjct: 399 KSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVE-SFRPGVA 457

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN VL G    G+IEEA R    M  ++C  D  +Y  ++ G   V  ++ A  +F  +
Sbjct: 458 TYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAV 517

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
              G    V  YN ++  LCKK  + +A  V  +++  GY
Sbjct: 518 EAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAGY 557



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 103/219 (47%), Gaps = 2/219 (0%)

Query: 91  NILSYHPTYAHSPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERY 148
            IL         P++  +A  I+   R R  +    L+ RM    + P   +F+++    
Sbjct: 338 EILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSL 397

Query: 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVI 208
             +   D A KIF  M E  C+ +  ++  ++D L K  +V+KA  +F++    F+  V 
Sbjct: 398 CKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVA 457

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           +YN + +G C V R  +A+ +++ M+ +   P+  +Y  +++G  R   +EEA+  F  +
Sbjct: 458 TYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAV 517

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           + +   ++V  Y  +V+       +  A  V + ++  G
Sbjct: 518 EAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAG 556


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 106/344 (30%), Positives = 176/344 (51%), Gaps = 8/344 (2%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
            +  + +    AG   +A+++F +M    C  SL ++N +++  C   +  KA +LF+  
Sbjct: 12  AYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSM 71

Query: 200 R--GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
           +   + + D  +YN + +G C    T  A ++L EM D+ +  N+ TY+ ++K   +  +
Sbjct: 72  KREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAK 131

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
            EE+++   EM    C  DV  +  ++ GF     +++AR V+  MV  G  P   +Y+ 
Sbjct: 132 PEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHI 191

Query: 318 MIQVLCKKDSVENAILVFEEMV--GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           +I  L K   ++ ++ +  EM     GY+PN  T++ +I GLC TGE+E+ALE  G M +
Sbjct: 192 LIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLE 251

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
             C+PN  TY  LI   C A ++ +  ELFEKM      P+   YN LI+    R   D+
Sbjct: 252 AGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDE 311

Query: 436 LLVAGKLLIEMV-DRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
              A KL  EM    G  P   TFN +++G   +G  G A E++
Sbjct: 312 ---AEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELV 352



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 176/357 (49%), Gaps = 7/357 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P + T+  +     S+G  + A K+   M +     ++ ++++I+  L KE K E++Y +
Sbjct: 79  PDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAKPEESYKV 138

Query: 196 FK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            + +       DV ++N +  G+       KA EV + MV+ G  P+  +Y+I++ G  +
Sbjct: 139 LEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAK 198

Query: 255 AGQIEEAWRFFLEMKKRKCEI--DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
            G+++E+ +   EM  R      +V+T++T++HG    GE+++A  VF  M+  G  P+ 
Sbjct: 199 IGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNK 258

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            TY  +I  LC+ + V  A  +FE+M      P++  YN +I G C  G M+ A +    
Sbjct: 259 YTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYRE 318

Query: 373 MKDDE-CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
           M      +P + T+N LI  FC  G++ R  EL  +MG+     +  TY ILI+ +    
Sbjct: 319 MSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRAT 378

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           K D+ L   ++  +M ++ F+    +    + GL   GN   A  +     + G +P
Sbjct: 379 KLDEAL---EVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVP 432



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 150/288 (52%), Gaps = 4/288 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M+  ++     T++ I +  V   K + + K+   M   GC   + +FN ++    
Sbjct: 103 LLSEMRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFA 162

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR--GLNPN 241
           +   +EKA  +++ +    +K D +SY+++ +G   + + +++L++L EM  R  G  PN
Sbjct: 163 RSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPN 222

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           + T++ ++ G  R G++E+A   F  M +  C+ +  TYTT++ G     ++ +AR +F+
Sbjct: 223 VITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFE 282

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG-KGYMPNSTTYNVVIRGLCHT 360
            M    + P    YN++I   CK+ S++ A  ++ EM G  G  P   T+N +I G C  
Sbjct: 283 KMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKL 342

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           G++ RA E V  M       +  TY ILI     A +++  LE++++M
Sbjct: 343 GKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQM 390



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 154/340 (45%), Gaps = 7/340 (2%)

Query: 73  DQIIKRLWNHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMK 130
             IIK L   A K    + +L        +P   +F+  +   AR  +      +   M 
Sbjct: 120 SSIIKSLVKEA-KPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMV 178

Query: 131 SLSLGPTQKTFAIIAERYVSAGKADRAVKIF--LSMHEHGCRQSLNSFNTILDLLCKEKK 188
                P   ++ I+       GK D ++KI   ++M   G   ++ +F+T++  LC+  +
Sbjct: 179 ESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGE 238

Query: 189 VEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           +EKA  +F  +     K +  +Y  +  G C  ++  +A E+ ++M    + P+   YN 
Sbjct: 239 LEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNS 298

Query: 248 VLKGYFRAGQIEEAWRFFLEMKK-RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
           ++ GY + G ++EA + + EM      +  +VT+ T++ GF  +G++ RA  +   M   
Sbjct: 299 LIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTK 358

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G+     TY  +I  L +   ++ A+ V+++M  K ++ +  +    + GLC TG +++A
Sbjct: 359 GLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQA 418

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
                  +     PN +T+ IL       G +E   +L E
Sbjct: 419 YAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLME 458



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 118/251 (47%), Gaps = 6/251 (2%)

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            Y+ V++   +AG + +A   F  MK   C   +VTY  +++     GE  +A ++F  M
Sbjct: 12  AYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSM 71

Query: 304 VNGG-VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
                V P   TYN +I  LC   + E A  +  EM  K    N  TY+ +I+ L    +
Sbjct: 72  KREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAK 131

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
            E + + +  M    C P+V  +N +++ F  +  +E+  E+++ M      P+  +Y+I
Sbjct: 132 PEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHI 191

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDR--GFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           LI  +    K D+ L   K+L EM  R  G++P   TF+ +++GL   G    A E+   
Sbjct: 192 LIHGLAKIGKLDESL---KILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGS 248

Query: 481 QSRCGRLPRQF 491
               G  P ++
Sbjct: 249 MLEAGCKPNKY 259



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 102/203 (50%), Gaps = 4/203 (1%)

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M K KC I    Y  +V      G + +A  VF+ M +   +PS+ TYN +I   C    
Sbjct: 1   MSKAKCAIGGDAYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGE 60

Query: 328 VENAILVFEEMV-GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
              A+ +F+ M   K   P+  TYN +I GLC +G  E A + +  M+D     NV TY+
Sbjct: 61  FGKALDLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYS 120

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            +I+      + E   ++ E+M +  C P++  +N ++   F R  S+++  A ++   M
Sbjct: 121 SIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQG-FAR--SNNMEKAREVYQHM 177

Query: 447 VDRGFMPRKFTFNRVLNGLLLIG 469
           V+ G+ P   +++ +++GL  IG
Sbjct: 178 VESGYKPDNVSYHILIHGLAKIG 200



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 58/107 (54%), Gaps = 4/107 (3%)

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           M   +C      Y+ +++    AG + + LE+FE M S  C+P+L TYN+LI+S   R  
Sbjct: 1   MSKAKCAIGGDAYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINS---RCN 57

Query: 433 SDDLLVAGKLLIEMV-DRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           + +   A  L   M  ++   P ++T+N +++GL   GN   A+++L
Sbjct: 58  AGEFGKALDLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLL 104


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 170/312 (54%), Gaps = 1/312 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+ RM      P + T+  +      +G+   A+++   M E   +     ++ I+D LC
Sbjct: 215 LIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLC 274

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K+  ++ A+NLF     K FKAD+I+YN +  G+C   R +   ++L++M+ R ++PN+ 
Sbjct: 275 KDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVV 334

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           T+++++  + + G++ EA +   EM +R    + +TY +++ GF     ++ A  + D M
Sbjct: 335 TFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLM 394

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           ++ G  P + T+N +I   CK + +++ + +F EM  +G + N+ TYN +++G C +G++
Sbjct: 395 ISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKL 454

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           E A +    M      P++ +Y IL+   CD GE+E+ LE+F K+       ++  Y I+
Sbjct: 455 EVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMII 514

Query: 424 ISSMFVRKKSDD 435
           I  M    K DD
Sbjct: 515 IHGMCNASKVDD 526



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 108/379 (28%), Positives = 187/379 (49%), Gaps = 4/379 (1%)

Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           AHS  +    I+   R R     ++ + ++  L   P    F  +        +   A++
Sbjct: 120 AHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALE 179

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWC 218
           +   M E G + +L + NT+++ LC   KV  A  L  ++    F+ + ++Y  + N  C
Sbjct: 180 LVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMC 239

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
              +T  A+E+L++M +R +  +   Y+I++ G  + G ++ A+  F EM+ +  + D++
Sbjct: 240 KSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADII 299

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TY T++ GF   G       +   M+   + P+V T++ +I    K+  +  A  + +EM
Sbjct: 300 TYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEM 359

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
           + +G  PN+ TYN +I G C    +E A++ V  M    C+P++ T+NILI  +C A  I
Sbjct: 360 MQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRI 419

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           + GLELF +M     + N  TYN L+       +S  L VA KL  EMV R   P   ++
Sbjct: 420 DDGLELFREMSLRGVIANTVTYNTLVQGFC---QSGKLEVAKKLFQEMVSRRVRPDIVSY 476

Query: 459 NRVLNGLLLIGNQGLAKEI 477
             +L+GL   G    A EI
Sbjct: 477 KILLDGLCDNGELEKALEI 495



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 175/376 (46%), Gaps = 4/376 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
            F+      A+ + Y  V  L  +M+S  +  +  T +I+   +    K   A      +
Sbjct: 90  DFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKI 149

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
            + G       FNT+L+ LC E +V +A  L  ++     K  +I+ N + NG CL  + 
Sbjct: 150 MKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKV 209

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A+ ++  MV+ G  PN  TY  VL    ++GQ   A     +M++R  ++D V Y+ I
Sbjct: 210 SDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSII 269

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G    G +  A N+F+ M   G    + TYN +I   C     ++   +  +M+ +  
Sbjct: 270 IDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKI 329

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN  T++V+I      G++  A + +  M      PN  TYN LI  FC    +E  ++
Sbjct: 330 SPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQ 389

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           + + M S  C P++ T+NILI+      + DD L   +L  EM  RG +    T+N ++ 
Sbjct: 390 MVDLMISKGCDPDIMTFNILINGYCKANRIDDGL---ELFREMSLRGVIANTVTYNTLVQ 446

Query: 464 GLLLIGNQGLAKEILR 479
           G    G   +AK++ +
Sbjct: 447 GFCQSGKLEVAKKLFQ 462



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 157/302 (51%), Gaps = 1/302 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M    + P   TF+++ + +V  GK   A ++   M + G   +  ++N+++D  C
Sbjct: 320 LLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFC 379

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           KE ++E+A  +  +   K    D++++N++ NG+C   R +  LE+ +EM  RG+  N  
Sbjct: 380 KENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTV 439

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN +++G+ ++G++E A + F EM  R+   D+V+Y  ++ G    GE+++A  +F  +
Sbjct: 440 TYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKI 499

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
               +   +  Y  +I  +C    V++A  +F  +  KG   ++  YN++I  LC    +
Sbjct: 500 EKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSL 559

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
            +A     +M ++   P+  TYNILIR      +     EL E+M S     ++ T  ++
Sbjct: 560 SKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMV 619

Query: 424 IS 425
           I+
Sbjct: 620 IN 621



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 148/298 (49%), Gaps = 4/298 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F   ID   +    R    L+  M    + P   T+  + + +    + + A+++   M
Sbjct: 335 TFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLM 394

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKR 222
              GC   + +FN +++  CK  +++    LF+    RG   A+ ++YN +  G+C   +
Sbjct: 395 ISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVI-ANTVTYNTLVQGFCQSGK 453

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
              A ++ +EMV R + P++ +Y I+L G    G++E+A   F +++K K E+D+  Y  
Sbjct: 454 LEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMI 513

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           I+HG     ++  A ++F  +   GV      YN MI  LC+KDS+  A ++F +M  +G
Sbjct: 514 IIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEG 573

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           + P+  TYN++IR      +   A E +  MK      +V T  ++I     +GE+++
Sbjct: 574 HAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVINML-SSGELDK 630



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 145/313 (46%), Gaps = 39/313 (12%)

Query: 188 KVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
           K + A +LF+ + + +    VI +N + +     K+    L + K+M  +G+  ++ T +
Sbjct: 68  KADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLS 127

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
           I++  + R  ++  A+    ++ K   E D V + T+++G  +   +  A  + D MV  
Sbjct: 128 IMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEM 187

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT----------------- 349
           G  P++ T N ++  LC    V +A+++ + MV  G+ PN  T                 
Sbjct: 188 GHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALA 247

Query: 350 ------------------YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
                             Y+++I GLC  G ++ A      M+    + ++ TYN LI  
Sbjct: 248 MELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGG 307

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
           FC+AG  + G +L   M      PN+ T+++LI S FV  K   L  A +LL EM+ RG 
Sbjct: 308 FCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDS-FV--KEGKLREADQLLKEMMQRGI 364

Query: 452 MPRKFTFNRVLNG 464
            P   T+N +++G
Sbjct: 365 APNTITYNSLIDG 377



 Score = 45.1 bits (105), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 70/183 (38%), Gaps = 39/183 (21%)

Query: 288 GVVG-EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
           G+VG +   A ++F  M+    LP+V  +N +   + K    E  + + ++M  KG   +
Sbjct: 63  GLVGIKADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHS 122

Query: 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
             T +++I   C   ++  A   +G++     EP+   +N L+   C    +   LEL +
Sbjct: 123 IYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVD 182

Query: 407 KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
           +M                                      V+ G  P   T N ++NGL 
Sbjct: 183 RM--------------------------------------VEMGHKPTLITLNTLVNGLC 204

Query: 467 LIG 469
           L G
Sbjct: 205 LNG 207


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 185/366 (50%), Gaps = 4/366 (1%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           T++  M+   + P   T  ++ +    AG  D A+ +  SM   G +  + +FN++L  L
Sbjct: 178 TVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGL 237

Query: 184 CKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CK ++ +KA  +F+   +     DV S+N++  G+C V    +A++  KEM  RG+ P++
Sbjct: 238 CKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDV 297

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            +++ ++  +   G+++ A  +  EMK      D V YT ++ GF   G +  A  V D 
Sbjct: 298 VSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDE 357

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           MV  G LP V TYN ++  LCK+  + +A  +  EM  +G  P+  T+  +I G C  G 
Sbjct: 358 MVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGN 417

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
            E+AL+    +      P+V  YN LI   C  G++ +  EL++ M +    PN  TY+I
Sbjct: 418 FEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSI 477

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           LI S   + + ++   A   L EMV +G +P   T+N ++ G    GN    ++ L+   
Sbjct: 478 LIDSHCEKGQVEE---AFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMM 534

Query: 483 RCGRLP 488
           +   LP
Sbjct: 535 QDNILP 540



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 190/388 (48%), Gaps = 4/388 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  +    + R +     +   M   S+ P  ++F I+   +   G+ + A+K +  M
Sbjct: 229 TFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEM 288

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRT 223
            + G    + SF+ ++ L     K++ A    +  +G     D + Y ++  G+C     
Sbjct: 289 QQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSM 348

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           ++AL V  EMV  G  P++ TYN +L G  +  ++ +A     EMK+R    D+ T+TT+
Sbjct: 349 SEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTL 408

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +HG+   G  ++A  +FD +++  + P V  YN++I  +C+K  +  A  ++++M  +  
Sbjct: 409 IHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREI 468

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN  TY+++I   C  G++E A  F+  M      PN+ TYN +I+ +C +G +++G +
Sbjct: 469 FPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQ 528

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
             +KM     LP+L T+N LI       K +++  A  +   M      P   T+N ++N
Sbjct: 529 FLQKMMQDNILPDLITFNTLIHGYI---KEENMHGAFNVFNIMEKEMVQPDAVTYNMIIN 585

Query: 464 GLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           G    GN   A  + +     G  P ++
Sbjct: 586 GFSEQGNMEEAGRVFKKMGASGIEPDRY 613



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 128/253 (50%), Gaps = 1/253 (0%)

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIAN 215
           A ++   M E G    L +F T++   C++   EKA  LF  +   + + DV++YN + +
Sbjct: 386 AEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLID 445

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
           G C      KA E+  +M  R + PN  TY+I++  +   GQ+EEA+ F  EM  +    
Sbjct: 446 GMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLP 505

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
           +++TY +I+ G+   G +K+ +     M+   +LP + T+N +I    K++++  A  VF
Sbjct: 506 NIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVF 565

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
             M  +   P++ TYN++I G    G ME A     +M     EP+  TY  LI     A
Sbjct: 566 NIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTA 625

Query: 396 GEIERGLELFEKM 408
           G  +   +L ++M
Sbjct: 626 GNSKEAFQLHDEM 638



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 142/282 (50%), Gaps = 5/282 (1%)

Query: 189 VEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
            E+AY L  V     + +  + N++ + +C     +KA  V+ EM  R + P++ T+N++
Sbjct: 141 AEEAYRL--VLSSDSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVL 198

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           +   FRAG ++ A      M  +  +  +VT+ +++ G        +A+ VF  M    V
Sbjct: 199 IDARFRAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSV 258

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
            P V ++N +I   C+   VE A+  ++EM  +G  P+  +++ +I      G+M+ A  
Sbjct: 259 APDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAA 318

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
           ++  MK     P+   Y ++I  FC AG +   L + ++M    CLP++ TYN L++ + 
Sbjct: 319 YLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLC 378

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
              K   LL A +LL EM +RG  P   TF  +++G    GN
Sbjct: 379 ---KQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGN 417



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 119/259 (45%), Gaps = 36/259 (13%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L++ MK   + P   TF  +   Y   G  ++A+++F ++     R  + ++N+++D +C
Sbjct: 389 LLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMC 448

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           ++  + KA  L+     +    + ++Y+++ +  C   +  +A   L EMV +G  PN+ 
Sbjct: 449 RKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIM 508

Query: 244 TYNIVLKGYFRAGQIEEAWRF-----------------------------------FLEM 268
           TYN ++KGY R+G +++  +F                                   F  M
Sbjct: 509 TYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIM 568

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
           +K   + D VTY  I++GF   G ++ A  VF  M   G+ P   TY ++I       + 
Sbjct: 569 EKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNS 628

Query: 329 ENAILVFEEMVGKGYMPNS 347
           + A  + +EM+ +G+ P+ 
Sbjct: 629 KEAFQLHDEMMHRGFAPDD 647



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 5/119 (4%)

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
           + E N  T NI++  +C + E ++   +  +M      P++ T+N+LI + F   ++ D+
Sbjct: 152 DSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARF---RAGDV 208

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP--RQFKL 493
             A  L+  M ++G  P   TFN VL GL        AKE+ R   +C   P  R F +
Sbjct: 209 DAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNI 267


>gi|9755668|emb|CAC01820.1| putative protein [Arabidopsis thaliana]
          Length = 532

 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 118/421 (28%), Positives = 201/421 (47%), Gaps = 10/421 (2%)

Query: 37  AADPAALASLILT-STDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSY 95
           + D   ++ L+    +D + L   L    +  + +LV +I+ R+ N    A  FF     
Sbjct: 54  SEDVGKISKLVKDCGSDRKELRNKLEECDVKPSNELVVEILSRVRNDWETAFTFFVWAGK 113

Query: 96  HPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLG-PTQKTFAIIAERYVSAGKA 154
              Y  S   +   I +  ++R + T WTL+  M+  S      +T  I+  +Y +    
Sbjct: 114 QQGYVRSVREYHSMISILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKYCAVHDV 173

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIA 214
            +A+  F +         ++ F ++L  LC+ K V  A +L    + K+  D  S+N++ 
Sbjct: 174 GKAINTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDKYPFDAKSFNIVL 233

Query: 215 NGWC-LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
           NGWC ++    +A  V  EM + G+  ++ +Y+ ++  Y + G + +  + F  MKK   
Sbjct: 234 NGWCNVIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECI 293

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGM-VNGGVLPSVATYNAMIQVLCKKDSVENAI 332
           E D   Y  +VH       +  ARN+   M    G+ P+V TYN++I+ LCK    E A 
Sbjct: 294 EPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAK 353

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
            VF+EM+ KG  P   TY+  +R L  TG  E   E + +M+   CEP V+TY +LIR  
Sbjct: 354 QVFDEMLEKGLFPTIRTYHAFMRIL-RTG--EEVFELLAKMRKMGCEPTVETYIMLIRKL 410

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
           C   + +  L L+++M      P+L +Y ++I  +F+  K ++   A     EM D+G  
Sbjct: 411 CRWRDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEE---AYGYYKEMKDKGMR 467

Query: 453 P 453
           P
Sbjct: 468 P 468



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/245 (21%), Positives = 105/245 (42%), Gaps = 7/245 (2%)

Query: 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           H   S+   I   ++      V  L  RMK   + P +K +  +      A     A  +
Sbjct: 260 HDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECIEPDRKVYNAVVHALAKASFVSEARNL 319

Query: 161 FLSMHEH-GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGW 217
             +M E  G   ++ ++N+++  LCK +K E+A  +F     +G F   + +Y+      
Sbjct: 320 MKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDEMLEKGLFPT-IRTYHAFMR-- 376

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
            +++   +  E+L +M   G  P + TY ++++   R    +     + EMK++    D+
Sbjct: 377 -ILRTGEEVFELLAKMRKMGCEPTVETYIMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDL 435

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
            +Y  ++HG  + G+I+ A   +  M + G+ P+    + +      K   E  I   + 
Sbjct: 436 SSYIVMIHGLFLNGKIEEAYGYYKEMKDKGMRPNENVEDMIQSWFSGKQYAEQRITDSKG 495

Query: 338 MVGKG 342
            V KG
Sbjct: 496 EVNKG 500


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 109/397 (27%), Positives = 195/397 (49%), Gaps = 16/397 (4%)

Query: 80  WNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQK 139
           W+ A +     +     P       SF+  I    R  +          M+   + P   
Sbjct: 245 WDKAREVFRAMDACGVAPDV----RSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVV 300

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           +F+ +   +   G+ D A +    M E G       +  ++   C+   + +A  +    
Sbjct: 301 SFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRV---- 356

Query: 200 RGKFKA-----DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           R +  A     DV++YN + NG C  +R + A E+L EM +RG+ P+L T+  ++ GY R
Sbjct: 357 RDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCR 416

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G IE+A +FF  +  ++   D+VTY T++ G    G++ +A  ++D M +  + P+  T
Sbjct: 417 DGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVT 476

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y+ +I   C+K  V+NA    +EMV KG +PN  TYN +I+G C +G + +  +F+ +M+
Sbjct: 477 YSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMR 536

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
            D+  P++ TYN LI  +   G++     L + M +    P+  TYN++IS   V     
Sbjct: 537 HDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHG--- 593

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
           ++  A  +  +M  RG  P ++T+  ++NG ++ GN 
Sbjct: 594 NMQEADWVYKKMGARGIEPDRYTYMSMINGHVVAGNS 630



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 184/361 (50%), Gaps = 4/361 (1%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           +  V T++  M+   + P   T  ++ +    AG  + A+ +  SM   G +  L ++N+
Sbjct: 175 FGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNS 234

Query: 179 ILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           +L  L +  + +KA  +F+         DV S+N++  G+C      +AL   KEM  R 
Sbjct: 235 VLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRR 294

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
           + P++ +++ ++  + R G+++ A  +  EM++     D V YT ++ GF   G +  A 
Sbjct: 295 VTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEAL 354

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
            V D MV  G LP V TYN ++  LCK+  + +A  +  EM  +G  P+  T+  +I G 
Sbjct: 355 RVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGY 414

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
           C  G +E+AL+F   + D    P++ TYN LI   C  G++ +  EL++ M S    PN 
Sbjct: 415 CRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNH 474

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
            TY+ILI S   + + D+   A   L EMV++G +P   T+N ++ G    GN    ++ 
Sbjct: 475 VTYSILIDSHCEKGQVDN---AFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQF 531

Query: 478 L 478
           L
Sbjct: 532 L 532



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 111/427 (25%), Positives = 196/427 (45%), Gaps = 41/427 (9%)

Query: 103 PSSFDHAIDLAARLR--DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P    H + + AR R  D      L+  M S  + P   T+  + +  +  G+ D+A ++
Sbjct: 192 PDVVTHNVMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREV 251

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVIS---------- 209
           F +M   G    + SFN ++   C+  ++E+A   +K  RG+    DV+S          
Sbjct: 252 FRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTR 311

Query: 210 -------------------------YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
                                    Y ++  G+C      +AL V  EMV  G  P++ T
Sbjct: 312 RGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVT 371

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           YN +L G  +  ++ +A     EMK+R    D+ T+TT++HG+   G I++A   FD + 
Sbjct: 372 YNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTIS 431

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
           +  + P + TYN +I  +C++  +  A  ++++M  +   PN  TY+++I   C  G+++
Sbjct: 432 DQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVD 491

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
            A  F+  M +    PN+ TYN +I+ +C +G + +G +   KM     +P+L TYN LI
Sbjct: 492 NAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLI 551

Query: 425 SSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484
                  K   +  A  LL  M +    P   T+N +++G  + GN   A  + +     
Sbjct: 552 HGYV---KEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGAR 608

Query: 485 GRLPRQF 491
           G  P ++
Sbjct: 609 GIEPDRY 615



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 168/350 (48%), Gaps = 4/350 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           SF   I L  R  +       +  M+   L P    + ++   +  AG    A+++   M
Sbjct: 301 SFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEM 360

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
              GC   + ++NT+L+ LCKE+++  A  L    + +    D+ ++  + +G+C     
Sbjct: 361 VAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNI 420

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            KAL+    + D+ L P++ TYN ++ G  R G + +A   + +M  R+   + VTY+ +
Sbjct: 421 EKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSIL 480

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +      G++  A    D MVN G++P++ TYN++I+  C+  +V        +M     
Sbjct: 481 IDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKV 540

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
           MP+  TYN +I G    G+M  A   +  M+++  +P+  TYN++I  F   G ++    
Sbjct: 541 MPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADW 600

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
           +++KMG+    P+  TY  +I+   V   S       +L  EM+ +G  P
Sbjct: 601 VYKKMGARGIEPDRYTYMSMINGHVVAGNSKKSF---QLHDEMLQKGLAP 647



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 144/279 (51%), Gaps = 5/279 (1%)

Query: 192 AYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
           AY L  V     + +  + N++ + +C   +  +   V+ EM  R + P++ T+N+++  
Sbjct: 146 AYRL--VLSSNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDA 203

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
            FRAG +E A      M  +  +  +VTY +++ G    G   +AR VF  M   GV P 
Sbjct: 204 RFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPD 263

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
           V ++N +I   C+   +E A+  ++EM G+   P+  +++ +I      GEM+ A E++ 
Sbjct: 264 VRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLR 323

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
            M++    P+   Y ++I  FC AG +   L + ++M +  CLP++ TYN L++ +   +
Sbjct: 324 EMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKER 383

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
           +  D   A +LL EM +RG  P   TF  +++G    GN
Sbjct: 384 RLSD---AEELLNEMKERGVPPDLCTFTTLIHGYCRDGN 419



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 134/258 (51%), Gaps = 1/258 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L++ MK   + P   TF  +   Y   G  ++A++ F ++ +   R  + ++NT++D +C
Sbjct: 391 LLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMC 450

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           ++  + KA  L+     +    + ++Y+++ +  C   + + A   L EMV++G+ PN+ 
Sbjct: 451 RQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIM 510

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN ++KGY R+G + +  +F  +M+  K   D++TY T++HG+   G++  A N+   M
Sbjct: 511 TYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIM 570

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            N  V P   TYN +I       +++ A  V+++M  +G  P+  TY  +I G    G  
Sbjct: 571 ENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSMINGHVVAGNS 630

Query: 364 ERALEFVGRMKDDECEPN 381
           +++ +    M      P+
Sbjct: 631 KKSFQLHDEMLQKGLAPD 648



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 122/248 (49%), Gaps = 3/248 (1%)

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           N  T NI++  Y +  Q  E      EM+KR    DVVT+  +V      G+++ A  + 
Sbjct: 158 NTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMALI 217

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           D MV+ G+ P + TYN++++ L +    + A  VF  M   G  P+  ++N++I G C  
Sbjct: 218 DSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRA 277

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
           GE+E AL F   M+     P+V +++ LI  F   GE++   E   +M     +P+   Y
Sbjct: 278 GELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIY 337

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
            ++I   F R  +  +L A ++  EMV  G +P   T+N +LNGL        A+E+L  
Sbjct: 338 TMVIGG-FCR--AGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNE 394

Query: 481 QSRCGRLP 488
               G  P
Sbjct: 395 MKERGVPP 402



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 11/120 (9%)

Query: 379 EPNVQTYNILIRYFCDA---GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
           E N  T NI++  +C     GE++  +   EK       P++ T+N+++ + F   ++ D
Sbjct: 156 EVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKR---CVFPDVVTHNVMVDARF---RAGD 209

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP--RQFKL 493
           +  A  L+  MV +G  P   T+N VL GLL  G    A+E+ R    CG  P  R F +
Sbjct: 210 VEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNM 269


>gi|356547370|ref|XP_003542086.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Glycine max]
          Length = 628

 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 113/413 (27%), Positives = 202/413 (48%), Gaps = 10/413 (2%)

Query: 69  PQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHR 128
           P L ++++ R  +    A  F++  S    +     ++   I + +R+R +  VW L+  
Sbjct: 96  PGLTERVLNRCGDAGNLAYRFYSWASKQSGHRLDHDAYKAMIKVLSRMRQFGAVWALIEE 155

Query: 129 MKSLSLGP---TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185
           M+  +  P   T + F I+  R+ SA    +AV++   M  +GC      F  +LD L K
Sbjct: 156 MRQEN--PHLITPQVFVILMRRFASARMVHKAVQVLDEMPNYGCEPDEYVFGCLLDALRK 213

Query: 186 EKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
              V++A +LF+  R ++K  V  +  +  GWC   +  +A  VL +M D G+ P++  Y
Sbjct: 214 NGSVKEAASLFEELRYRWKPSVKHFTSLLYGWCKEGKLMEAKHVLVQMKDAGIEPDIVVY 273

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           N +L GY +A ++ +A+    EM+++ CE +  +YT ++        ++ A  VF  M  
Sbjct: 274 NNLLGGYAQADKMGDAYDLLKEMRRKGCEPNATSYTVLIQSLCKHERLEEATRVFVEMQR 333

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G    + TY+ +I   CK   ++    + +EM+ +G+ PN   Y  ++       E+E 
Sbjct: 334 NGCQADLVTYSTLISGFCKWGKIKRGYELLDEMIQQGHFPNQVIYQHIMVAHEKKEELEE 393

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
             E V  M+   C P++  YN +IR  C  GE++ G+ L+ +M S    P++DT+ I+I+
Sbjct: 394 CKELVNEMQKIGCAPDLSIYNTVIRLACKLGEVKEGVRLWNEMESSGLSPSIDTFVIMIN 453

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFM--PRKFTFNRVLNGLLLIGNQGLAKE 476
                 +   L+ A +   EMV RG    P+  T   ++N LL      +AK+
Sbjct: 454 GFL---EQGCLVEACEYFKEMVGRGLFAAPQYGTLKELMNSLLRAEKLEMAKD 503



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 109/248 (43%), Gaps = 5/248 (2%)

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE-IDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            Y  ++K   R  Q    W    EM++     I    +  ++  F     + +A  V D 
Sbjct: 132 AYKAMIKVLSRMRQFGAVWALIEEMRQENPHLITPQVFVILMRRFASARMVHKAVQVLDE 191

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M N G  P    +  ++  L K  SV+ A  +FEE+  + + P+   +  ++ G C  G+
Sbjct: 192 MPNYGCEPDEYVFGCLLDALRKNGSVKEAASLFEELRYR-WKPSVKHFTSLLYGWCKEGK 250

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           +  A   + +MKD   EP++  YN L+  +  A ++    +L ++M    C PN  +Y +
Sbjct: 251 LMEAKHVLVQMKDAGIEPDIVVYNNLLGGYAQADKMGDAYDLLKEMRRKGCEPNATSYTV 310

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           LI S+    K + L  A ++ +EM   G      T++ +++G    G      E+L    
Sbjct: 311 LIQSLC---KHERLEEATRVFVEMQRNGCQADLVTYSTLISGFCKWGKIKRGYELLDEMI 367

Query: 483 RCGRLPRQ 490
           + G  P Q
Sbjct: 368 QQGHFPNQ 375



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/293 (20%), Positives = 118/293 (40%), Gaps = 41/293 (13%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
            + L+  M+     P   ++ ++ +      + + A ++F+ M  +GC+  L +++T++ 
Sbjct: 289 AYDLLKEMRRKGCEPNATSYTVLIQSLCKHERLEEATRVFVEMQRNGCQADLVTYSTLIS 348

Query: 182 LLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
             CK  K+++ Y L    + +G F   VI Y  I       +   +  E++ EM   G  
Sbjct: 349 GFCKWGKIKRGYELLDEMIQQGHFPNQVI-YQHIMVAHEKKEELEECKELVNEMQKIGCA 407

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           P+L+ YN V++   + G+++E  R + EM+       + T+  +++GF   G +  A   
Sbjct: 408 PDLSIYNTVIRLACKLGEVKEGVRLWNEMESSGLSPSIDTFVIMINGFLEQGCLVEACEY 467

Query: 300 FDGMVNGGVLPS--------------------------------------VATYNAMIQV 321
           F  MV  G+  +                                      V+ +   I  
Sbjct: 468 FKEMVGRGLFAAPQYGTLKELMNSLLRAEKLEMAKDAWNCITASKGCQLNVSAWTIWIHA 527

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           L  K  V+ A      M+ K  MP   T+  ++RGL      E A E   +++
Sbjct: 528 LFSKGHVKEACSFCIAMMDKDLMPQPDTFAKLMRGLKKLYNREFAAEITEKVR 580


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 185/382 (48%), Gaps = 4/382 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  ID   R R  RT   ++  M S  + P + TF  + E +V  G  + A+++   M
Sbjct: 198 TFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARM 257

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV-FRGKFKADVISYNVIANGWCLVKRT 223
            E GC  +  + N +++  CK  +V  A    +      F+ D ++++   NG C     
Sbjct: 258 SEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHV 317

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + AL+VL  M+  G  P++ TY+ V+      G++EEA     +M    C  D  T+ T+
Sbjct: 318 DHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTL 377

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +       +++ A ++   +   G+ P+V T+N +I  LCK      A+ +FEEM   G 
Sbjct: 378 IVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGC 437

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+  TYN++I  LC +G++ +AL+ +  M+   C  +  TYN +I   C    IE   E
Sbjct: 438 TPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEE 497

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           +F++M       N  T+N LI  +   ++ DD   A +L+ +M+  G  P   T+N +L 
Sbjct: 498 VFDQMDVTGIGRNAITFNTLIDGLCNAERIDD---AAELVDQMISEGLQPNNVTYNSILT 554

Query: 464 GLLLIGNQGLAKEILRLQSRCG 485
                GN   A +IL+  +  G
Sbjct: 555 HYCKQGNISKAADILQTMTANG 576



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 174/357 (48%), Gaps = 4/357 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P + TF+         G  D A+K+   M + GC   + +++T+++ LC   ++E+A  +
Sbjct: 299 PDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGI 358

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             ++       D  ++N +    C   +  +AL++ +E+  +GL+PN+ T+NI++    +
Sbjct: 359 VNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCK 418

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G    A R F EMK   C  D VTY  ++      G++ +A ++   M   G   S  T
Sbjct: 419 VGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVT 478

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN +I  LCK+  +E A  VF++M   G   N+ T+N +I GLC+   ++ A E V +M 
Sbjct: 479 YNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMI 538

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
            +  +PN  TYN ++ ++C  G I +  ++ + M +     ++ TY  LI+ +   +++ 
Sbjct: 539 SEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQ 598

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
             L   KLL  M  +G  P    +N V+  L    N   A  + R  +  G  P  F
Sbjct: 599 AAL---KLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPPDAF 652



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 153/294 (52%), Gaps = 2/294 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  I+   ++ D      L   MKS    P + T+ I+ +   S+GK  +A+ +   M
Sbjct: 408 TFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEM 467

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
              GC QS  ++NTI+D LCK +++E+A  +F ++       + I++N + +G C  +R 
Sbjct: 468 EVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERI 527

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A E++ +M+  GL PN  TYN +L  Y + G I +A      M     E+DVVTY T+
Sbjct: 528 DDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATL 587

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++G       + A  +  GM   G+ P+   YN +IQ L + ++  +A+ +F EM   G 
Sbjct: 588 INGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGG 647

Query: 344 MPNSTTYNVVIRGLCH-TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
            P++ TY +V RGLC   G ++ A +F+  M D+   P   ++ +L     + G
Sbjct: 648 PPDAFTYKIVFRGLCRGGGPIKEAFDFLVEMADNGFIPEFSSFRMLAEGLLNLG 701



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 168/385 (43%), Gaps = 44/385 (11%)

Query: 127 HRMKSLSL------GPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180
           H +K L L       P   T++ +     + G+ + A  I   M + GC     +FNT++
Sbjct: 319 HALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLI 378

Query: 181 DLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
             LC E ++E+A +L +    K    +V ++N++ N  C V   + A+ + +EM   G  
Sbjct: 379 VALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCT 438

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           P+  TYNI++     +G++ +A     EM+   C    VTY TI+ G      I+ A  V
Sbjct: 439 PDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEV 498

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV------ 353
           FD M   G+  +  T+N +I  LC  + +++A  + ++M+ +G  PN+ TYN +      
Sbjct: 499 FDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCK 558

Query: 354 -----------------------------IRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
                                        I GLC     + AL+ +  M+    +P  + 
Sbjct: 559 QGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKA 618

Query: 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLI 444
           YN +I+           L LF +M      P+  TY I+   +   +    +  A   L+
Sbjct: 619 YNPVIQSLFRGNNGRDALSLFREMTEVGGPPDAFTYKIVFRGLC--RGGGPIKEAFDFLV 676

Query: 445 EMVDRGFMPRKFTFNRVLNGLLLIG 469
           EM D GF+P   +F  +  GLL +G
Sbjct: 677 EMADNGFIPEFSSFRMLAEGLLNLG 701



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 150/340 (44%), Gaps = 44/340 (12%)

Query: 192 AYNLFKVFRGKFKAD--VISYNVIAN---GWCLVKRTNKALEVLKEMVDR-GLNPNLTTY 245
           A++L KV  G+ + +   +   ++ +    +  ++  + A +++   +D  G+  N   Y
Sbjct: 105 AFDLMKVLVGEMRREGHEVGLGLVQSFIGSYARLQLFDDAFDLVSNQLDMFGVQANTEVY 164

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT-------------------------- 279
           N +L       +I+     + EM  +  E DVVT                          
Sbjct: 165 NHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMSS 224

Query: 280 ---------YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
                    +TT++ GF   G I+ A  +   M   G  P+  T N +I   CK   V +
Sbjct: 225 CDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGD 284

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           A+   ++ +  G+ P+  T++  + GLC  G ++ AL+ +G M  + CEP+V TY+ +I 
Sbjct: 285 ALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVIN 344

Query: 391 YFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450
             C+ GE+E    +  +M    CLP+  T+N LI ++    + ++ L    L  E+  +G
Sbjct: 345 CLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEAL---DLARELTVKG 401

Query: 451 FMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
             P  +TFN ++N L  +G+  LA  +       G  P +
Sbjct: 402 LSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDE 441



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 118/275 (42%), Gaps = 4/275 (1%)

Query: 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
            S  +++  ID   + R       +  +M    +G    TF  + +   +A + D A ++
Sbjct: 474 QSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAEL 533

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCL 219
              M   G + +  ++N+IL   CK+  + KA ++ +      F+ DV++Y  + NG C 
Sbjct: 534 VDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCK 593

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
            +RT  AL++L+ M  +G+ P    YN V++  FR     +A   F EM +     D  T
Sbjct: 594 ARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPPDAFT 653

Query: 280 YTTIVHGFG-VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           Y  +  G     G IK A +    M + G +P  +++  + + L      +  I   E +
Sbjct: 654 YKIVFRGLCRGGGPIKEAFDFLVEMADNGFIPEFSSFRMLAEGLLNLGMDDYLIRAIELI 713

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           V K     S      IRG     +   A+   GR+
Sbjct: 714 VEKANFRESDIS--AIRGYLRIRKYYDAIATFGRL 746



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 114/259 (44%), Gaps = 12/259 (4%)

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF-GVVGEI 293
           D GL P+   Y  +++    AG  +       EM++   E+ +     +V  F G    +
Sbjct: 83  DDGLTPSRDVYEEIIRKLGTAGAFDLMKVLVGEMRREGHEVGL----GLVQSFIGSYARL 138

Query: 294 KRARNVFDGMVNG----GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
           +   + FD + N     GV  +   YN ++ VL +   ++     + EM  +G  P+  T
Sbjct: 139 QLFDDAFDLVSNQLDMFGVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVT 198

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
           +N VI  LC   +   A+  +  M   +  P+  T+  L+  F + G IE  L L  +M 
Sbjct: 199 FNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMS 258

Query: 410 SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
              C P   T N+LI+      +  D L  G +  E+ D GF P + TF+  +NGL   G
Sbjct: 259 EMGCSPTSVTVNVLINGYCKLGRVGDAL--GYIQQEIAD-GFEPDRVTFSTFVNGLCQNG 315

Query: 470 NQGLAKEILRLQSRCGRLP 488
           +   A ++L L  + G  P
Sbjct: 316 HVDHALKVLGLMLQEGCEP 334


>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Brachypodium distachyon]
          Length = 627

 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 107/335 (31%), Positives = 174/335 (51%), Gaps = 6/335 (1%)

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIAN 215
           A    L +  H  R +  S+ T++  LC E++  +A  L +  +    + DV++Y  +  
Sbjct: 97  AALFLLRVMAHETRPTAVSYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIR 156

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
           G C     +KA+E+L+EM + G+ PN+  Y+ +L+GY +AG+ E   + F EM  R  E 
Sbjct: 157 GLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEP 216

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
           DVV YT ++      G++K+A  V D M+  G+ P+V TYN +I  +CK+ SV+ A+ + 
Sbjct: 217 DVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLR 276

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE--CEPNVQTYNILIRYFC 393
             M+ KG   ++ TYN +I GL    EM+ A+  +  M   E   EPNV T+N +I   C
Sbjct: 277 NNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLC 336

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
             G + +  ++ + M    C  NL T+N+LI  +    K      A +L+ EM   G  P
Sbjct: 337 KTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKK---AMELMDEMASSGLEP 393

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             FT++ ++NG   +     A+ +L    R G  P
Sbjct: 394 DSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEP 428



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 105/422 (24%), Positives = 195/422 (46%), Gaps = 36/422 (8%)

Query: 103 PSSFDHAIDLAARLRDYRT--VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P++  +   + A   + RT     L+  M++  + P   T+  +      A   D+AV++
Sbjct: 111 PTAVSYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVEL 170

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCL 219
              M E G   ++  ++ +L   CK  + E    +F+   G+  + DV+ Y  + +  C 
Sbjct: 171 LREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCR 230

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
             +  KA +V+ +M++RGL PN+ TYN+++    + G ++EA      M ++   +D VT
Sbjct: 231 EGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVT 290

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVL--PSVATYNAMIQVLCKKDSVENAILVFEE 337
           Y T++ G   V E+  A  + + M++G  +  P+V T+N++I  LCK   +  A  V + 
Sbjct: 291 YNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDM 350

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M   G   N  T+N++I GL    ++++A+E +  M     EP+  TY+ILI  FC   +
Sbjct: 351 MAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQ 410

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD----------------------- 434
           ++R   L  KM      P L  Y  L++++  +   +                       
Sbjct: 411 VDRAESLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFDEMHKNCKLDVVAYSTM 470

Query: 435 --------DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGR 486
                   D   A + L  M+D G +P   T++ ++N     G+ G A+ +L+  +  G 
Sbjct: 471 IHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAERVLKQMTASGF 530

Query: 487 LP 488
           +P
Sbjct: 531 VP 532



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 179/365 (49%), Gaps = 10/365 (2%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           +  V  +   M    + P    +  + +     GK  +A ++   M E G   ++ ++N 
Sbjct: 199 WECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNV 258

Query: 179 ILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMV--D 235
           +++ +CKE  V++A +L      K  A D ++YN +  G   V   ++A+ +L+EM+  +
Sbjct: 259 LINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGE 318

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
             + PN+ T+N V+ G  + G++ +A++    M +  C  ++VT+  ++ G   V ++K+
Sbjct: 319 TMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKK 378

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
           A  + D M + G+ P   TY+ +I   CK   V+ A  +  +M   G  P    Y  ++ 
Sbjct: 379 AMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLA 438

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
            LC  G ME+A  F   M  + C+ +V  Y+ +I   C   + +   E  + M     +P
Sbjct: 439 ALCEQGMMEQARNFFDEMHKN-CKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIP 497

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
           +  TY++LI +MF    S DL  A ++L +M   GF+P    F+ ++ G    G +G  +
Sbjct: 498 DSVTYSMLI-NMFA--NSGDLGAAERVLKQMTASGFVPDVAVFDSLIKG---YGAKGDTE 551

Query: 476 EILRL 480
           ++L L
Sbjct: 552 KVLEL 556



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 160/331 (48%), Gaps = 4/331 (1%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID   R    +    ++ +M    L P   T+ ++       G    A+ +  +M E G 
Sbjct: 225 IDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGV 284

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGK--FKADVISYNVIANGWCLVKRTNKA 226
                ++NT++  L    ++++A  L + +  G+   + +V+++N + +G C   R  +A
Sbjct: 285 ALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQA 344

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
            +V   M + G   NL T+N+++ G  R  ++++A     EM     E D  TY+ +++G
Sbjct: 345 FQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILING 404

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
           F  + ++ RA ++   M   G+ P +  Y  ++  LC++  +E A   F+EM  K    +
Sbjct: 405 FCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFDEM-HKNCKLD 463

Query: 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
              Y+ +I G C   + + A EF+  M D+   P+  TY++LI  F ++G++     + +
Sbjct: 464 VVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAERVLK 523

Query: 407 KMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
           +M +   +P++  ++ LI     +  ++ +L
Sbjct: 524 QMTASGFVPDVAVFDSLIKGYGAKGDTEKVL 554



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 124/239 (51%), Gaps = 2/239 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   TF  +       G+  +A ++   M E+GC  +L +FN ++  L +  KV+KA  L
Sbjct: 323 PNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMEL 382

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             ++     + D  +Y+++ NG+C + + ++A  +L +M   G+ P L  Y  +L     
Sbjct: 383 MDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCE 442

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G +E+A  FF EM K  C++DVV Y+T++HG   + + K A      M++ G++P   T
Sbjct: 443 QGMMEQARNFFDEMHK-NCKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVT 501

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           Y+ +I +      +  A  V ++M   G++P+   ++ +I+G    G+ E+ LE +  M
Sbjct: 502 YSMLINMFANSGDLGAAERVLKQMTASGFVPDVAVFDSLIKGYGAKGDTEKVLELIREM 560



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 127/235 (54%), Gaps = 2/235 (0%)

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           +FN+++  LCK  ++ +A+ +  +        +++++N++  G   V +  KA+E++ EM
Sbjct: 327 TFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEM 386

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
              GL P+  TY+I++ G+ +  Q++ A     +M++   E ++V Y  ++      G +
Sbjct: 387 ASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQGMM 446

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           ++ARN FD M     L  VA Y+ MI   C+    ++A    + M+ +G +P+S TY+++
Sbjct: 447 EQARNFFDEMHKNCKLDVVA-YSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSML 505

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           I    ++G++  A   + +M      P+V  ++ LI+ +   G+ E+ LEL  +M
Sbjct: 506 INMFANSGDLGAAERVLKQMTASGFVPDVAVFDSLIKGYGAKGDTEKVLELIREM 560



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 116/261 (44%), Gaps = 3/261 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  I    R+   +    L+  M S  L P   T++I+   +    + DRA  +   M
Sbjct: 362 TFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKM 421

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTN 224
              G    L  +  +L  LC++  +E+A N F       K DV++Y+ + +G C ++   
Sbjct: 422 RRDGIEPELVHYIPLLAALCEQGMMEQARNFFDEMHKNCKLDVVAYSTMIHGACRLRDRK 481

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
            A E LK M+D GL P+  TY++++  +  +G +  A R   +M       DV  + +++
Sbjct: 482 SAEEFLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAERVLKQMTASGFVPDVAVFDSLI 541

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD---SVENAILVFEEMVGK 341
            G+G  G+ ++   +   M    +       + +   L   +   ++  ++  F+  V K
Sbjct: 542 KGYGAKGDTEKVLELIREMTAKDIALDSKIISTIYTCLVANNEGKALLQSVPGFDTEVSK 601

Query: 342 GYMPNSTTYNVVIRGLCHTGE 362
           G + +S     ++  LC+  E
Sbjct: 602 GAVISSHELTNMLHKLCNKVE 622



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 3/119 (2%)

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           ++ +YN V+  LC  G    A  F+ R+   E  P   +Y  L+R  C      + + L 
Sbjct: 77  DAVSYNTVLAALCRQGGCLDAALFLLRVMAHETRPTAVSYTTLMRALCAERRTGQAVGLL 136

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
             M +    P++ TY  LI  +     + D+  A +LL EM + G  P    ++ +L G
Sbjct: 137 RDMQASGVRPDVVTYGTLIRGLC---DAADVDKAVELLREMCESGIEPNVVVYSCLLQG 192


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 187/376 (49%), Gaps = 7/376 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F   I+   ++ ++     L   M +    P   T+  I       G+   A  +   M
Sbjct: 165 TFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKM 224

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
            E GC+ ++ +++T++D LC+++ V +A ++F   + K    D+ +Y  +  G C   R 
Sbjct: 225 EEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRW 284

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A  +L EM    + P++ T+N+++  + + G++ EA      M +   E +VVTY+++
Sbjct: 285 KEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSL 344

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++G+ +  ++  AR +F  M+  G  P++ +YN +I   CK   ++ A+ +F EM+ +G 
Sbjct: 345 MYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGL 404

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN+ +YN +I G C  G++  A +    M  +   P++ TY+IL+  FC  G + +   
Sbjct: 405 TPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFR 464

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           LF  M S    PNL  Y IL+ +M       D   A KL  E+  +G  P    +  ++N
Sbjct: 465 LFRAMQSTYLKPNLVMYTILVHAMCKSGNHKD---ARKLFSELFVQGLQPHVQLYTTIIN 521

Query: 464 GLLLIGNQGLAKEILR 479
           GL     +GL  E L 
Sbjct: 522 GLC---KEGLLDEALE 534



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 171/362 (47%), Gaps = 4/362 (1%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           Y  V +L  +M+ + L P   T +I    +    + D    +   + + G + ++ +F T
Sbjct: 109 YDVVISLSKQMELVGLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTT 168

Query: 179 ILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           +++ LCK  +  +A  LF     K  + DV +YN I NG C +  T  A  +LK+M + G
Sbjct: 169 LINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAG 228

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
             PN+ TY+ ++    R   + EA   F  MK +    D+ TYT+++ G       K A 
Sbjct: 229 CQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEAS 288

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
            + + M +  ++P + T+N ++   CK+  V  A+ V + M   G  PN  TY+ ++ G 
Sbjct: 289 ALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGY 348

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
               ++  A +    M    C+PN+ +YNILI  +C A  I+  ++LF +M      PN 
Sbjct: 349 SLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNN 408

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
            +YN LI       K   L  A  L   M   G +P  FT++ +L+G    G  G A  +
Sbjct: 409 VSYNTLIHGFCQLGK---LREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRL 465

Query: 478 LR 479
            R
Sbjct: 466 FR 467



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 99/389 (25%), Positives = 189/389 (48%), Gaps = 5/389 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKA-DRAVKIFLS 163
           ++ H  D ++  R+        + M      P    FA +    V  G+  D  + +   
Sbjct: 59  TYQHKNDASSSFRNIDDALASFNHMLHRKPLPCIIQFAKLLSAIVKMGQYYDVVISLSKQ 118

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKR 222
           M   G   ++ + +  ++  C+ ++V+  ++ L KV +   +  ++++  + NG C V  
Sbjct: 119 MELVGLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGE 178

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
             +A+E+  +MV +G  P++ TYN ++ G  + G+   A     +M++  C+ ++VTY+T
Sbjct: 179 FAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYST 238

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++        +  A ++F  M   G+ P + TY ++IQ LCK    + A  +  EM    
Sbjct: 239 LIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLN 298

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
            MP+  T+NV++   C  G++  AL  +  M +   EPNV TY+ L+  +    ++    
Sbjct: 299 IMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEAR 358

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           +LF  M +  C PN+ +YNILI+     K+ D+   A +L  EM+ +G  P   ++N ++
Sbjct: 359 KLFHVMITKGCKPNIFSYNILINGYCKAKRIDE---AMQLFNEMIHQGLTPNNVSYNTLI 415

Query: 463 NGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           +G   +G    A+++ R     G LP  F
Sbjct: 416 HGFCQLGKLREAQDLFRNMCTNGNLPDLF 444



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 171/350 (48%), Gaps = 6/350 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   ID   R R       +   MK+  + P   T+  + +      +   A  +   M
Sbjct: 235 TYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEM 294

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRT 223
                   + +FN ++D  CKE KV +A  + K       + +V++Y+ +  G+ L    
Sbjct: 295 TSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDV 354

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A ++   M+ +G  PN+ +YNI++ GY +A +I+EA + F EM  +    + V+Y T+
Sbjct: 355 VEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTL 414

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +HGF  +G+++ A+++F  M   G LP + TY+ ++   CK+  +  A  +F  M     
Sbjct: 415 IHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYL 474

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN   Y +++  +C +G  + A +    +     +P+VQ Y  +I   C  G ++  LE
Sbjct: 475 KPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALE 534

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRK-KSDDLLVAGKLLIEMVDRGFM 452
            F  M +  C P+  +YN++I  +   K +S  LL+ G    EM DRGF+
Sbjct: 535 AFRNMEADGCPPDEISYNVIIRGLLQHKDESRALLLVG----EMRDRGFI 580



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 83/194 (42%), Gaps = 2/194 (1%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII 144
           +A+  FN +  H     +  S++  I    +L   R    L   M +    P   T++I+
Sbjct: 391 EAMQLFNEM-IHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSIL 449

Query: 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKF 203
            + +   G   +A ++F +M     + +L  +  ++  +CK    + A  LF ++F    
Sbjct: 450 LDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGL 509

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
           +  V  Y  I NG C     ++ALE  + M   G  P+  +YN++++G  +      A  
Sbjct: 510 QPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGLLQHKDESRALL 569

Query: 264 FFLEMKKRKCEIDV 277
              EM+ R    DV
Sbjct: 570 LVGEMRDRGFIADV 583


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 106/363 (29%), Positives = 190/363 (52%), Gaps = 4/363 (1%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177
           ++  V  ++  M+   + P   T  ++ +    AG A+ A+ +  SM   G +  + ++N
Sbjct: 171 EFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYN 230

Query: 178 TILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
           ++L  LC+    +KA+ +FK         DV S+ ++  G+C V    +AL++ KEM  R
Sbjct: 231 SVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHR 290

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           G+ P+L +++ ++  + R G+++ A  +  EM+      D V YT ++ GF   G +  A
Sbjct: 291 GIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDA 350

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
             V D MV  G LP V TYN ++  LCK+  + +A  +  EM  +G  P+  T+  +I G
Sbjct: 351 LRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHG 410

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
            C  G++++AL+    M +    P++ TYN LI   C  G++++  +L++ M S    PN
Sbjct: 411 YCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPN 470

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKE 476
             TY+ILI S   + + +D   A   L EM+++G +P   T+N ++ G    GN    ++
Sbjct: 471 HVTYSILIDSHCEKGQVED---AFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQK 527

Query: 477 ILR 479
            L+
Sbjct: 528 FLQ 530



 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 193/400 (48%), Gaps = 42/400 (10%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           +   W +   M    + P  ++F I+   +   G+ + A+KI+  M   G +  L SF+ 
Sbjct: 242 WDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSC 301

Query: 179 ILDLLCKEKKVEKAYNLFKVFR---------------GKF-------------------- 203
           ++ L  +  K++ A    +  R               G F                    
Sbjct: 302 LIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCG 361

Query: 204 -KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262
              DV++YN + NG C  +R   A  +L EM +RG+ P+L T+  ++ GY   G++++A 
Sbjct: 362 CLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKAL 421

Query: 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322
           + F  M  ++   D+VTY T++ G    G++ +A +++D M +  + P+  TY+ +I   
Sbjct: 422 QLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSH 481

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
           C+K  VE+A    +EM+ KG +PN  TYN +I+G C +G + +  +F+ +M  ++  P++
Sbjct: 482 CEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDL 541

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
            TYN LI  +    ++    +L   M      P++ TYN+LI+   V     +   AG +
Sbjct: 542 ITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQE---AGWI 598

Query: 443 LIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
             +M  +G  P ++T+  ++NG +  GN   +KE  +L  
Sbjct: 599 FEKMCAKGIEPDRYTYMSMINGHVTAGN---SKEAFQLHD 635



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/406 (27%), Positives = 193/406 (47%), Gaps = 41/406 (10%)

Query: 103 PSSFDHAIDLAARLR--DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P    H + + AR R  D      LV  M S  L P   T+  + +    +G  D+A ++
Sbjct: 189 PDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEV 248

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVIS---------- 209
           F  M + G    + SF  ++   C+  ++E+A  ++K  R +  K D++S          
Sbjct: 249 FKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFAR 308

Query: 210 -------------------------YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
                                    Y ++  G+C     + AL V  EMV  G  P++ T
Sbjct: 309 RGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVT 368

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           YN +L G  +  ++ +A     EM++R    D+ T+TT++HG+ + G++ +A  +FD M+
Sbjct: 369 YNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTML 428

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
           N  + P + TYN +I  +C++  ++ A  ++++M  +   PN  TY+++I   C  G++E
Sbjct: 429 NQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVE 488

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
            A  F+  M +    PN+ TYN +I+ +C +G + +G +  +KM      P+L TYN LI
Sbjct: 489 DAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLI 548

Query: 425 SSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
                  K D +  A KLL  M      P   T+N ++NG  + GN
Sbjct: 549 HGYI---KEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGN 591



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 142/278 (51%), Gaps = 5/278 (1%)

Query: 192 AYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
           AY L  VF    + +  + N++ + +C     +K   V+ EM  R + P++ T+N+++  
Sbjct: 143 AYRL--VFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDA 200

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
            FRAG  E A      M  +  +  +VTY +++ G    G   +A  VF  M + GV P 
Sbjct: 201 RFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPD 260

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
           V ++  +I   C+   +E A+ +++EM  +G  P+  +++ +I      G+M+ A+ ++ 
Sbjct: 261 VRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLR 320

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
            M+     P+   Y ++I  FC AG +   L + ++M    CLP++ TYN L++ +   +
Sbjct: 321 EMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKER 380

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
           +   LL A  LL EM +RG  P   TF  +++G  + G
Sbjct: 381 R---LLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEG 415



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 149/340 (43%), Gaps = 36/340 (10%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           SF   I L AR          +  M+   L P    + ++   +  AG    A+++   M
Sbjct: 298 SFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEM 357

Query: 165 HEHGCRQSLNSFNTILDLLCKEK-----------------------------------KV 189
              GC   + ++NT+L+ LCKE+                                   K+
Sbjct: 358 VGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKL 417

Query: 190 EKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
           +KA  LF  +   + + D+++YN + +G C     +KA ++  +M  R + PN  TY+I+
Sbjct: 418 DKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSIL 477

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           +  +   GQ+E+A+ F  EM  +    +++TY +I+ G+   G + + +     M+   V
Sbjct: 478 IDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKV 537

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
            P + TYN +I    K+D + +A  +   M  +   P+  TYN++I G    G ++ A  
Sbjct: 538 SPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGW 597

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
              +M     EP+  TY  +I     AG  +   +L ++M
Sbjct: 598 IFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEM 637



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 126/259 (48%), Gaps = 36/259 (13%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L++ M+   + P   TF  +   Y   GK D+A+++F +M     R  + ++NT++D +C
Sbjct: 388 LLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMC 447

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           ++  ++KA +L+     +    + ++Y+++ +  C   +   A   L EM+++G+ PN+ 
Sbjct: 448 RQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIM 507

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEM----------------------------------- 268
           TYN ++KGY R+G + +  +F  +M                                   
Sbjct: 508 TYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMM 567

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
           +K K + DVVTY  +++GF V G ++ A  +F+ M   G+ P   TY +MI       + 
Sbjct: 568 EKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNS 627

Query: 329 ENAILVFEEMVGKGYMPNS 347
           + A  + +EM+ +G+ P+ 
Sbjct: 628 KEAFQLHDEMLQRGFAPDD 646



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 3/110 (2%)

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
           E N  T NI++  +C A E ++   +  +M      P++ T+N+++ + F   ++ D   
Sbjct: 153 EVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARF---RAGDAEA 209

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           A  L+  MV +G  P   T+N VL GL   G    A E+ +     G  P
Sbjct: 210 AMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAP 259


>gi|224123678|ref|XP_002319139.1| predicted protein [Populus trichocarpa]
 gi|222857515|gb|EEE95062.1| predicted protein [Populus trichocarpa]
          Length = 518

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/420 (27%), Positives = 203/420 (48%), Gaps = 11/420 (2%)

Query: 39  DPAALASLILTSTDPRT-LTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHP 97
           D   + +++  S D R  +   +    +  + +LV +++ R+ N    A  FF   +  P
Sbjct: 24  DAKTIVNILQESCDNRVEMKSKIEQCGIKVSQELVLEVLSRVRNDWEAAFTFFLWAARQP 83

Query: 98  TYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGP---TQKTFAIIAERYVSAGKA 154
            YAHS   +   I +  ++R + T W L+  M+ +  G    T +T  I+  +Y +    
Sbjct: 84  GYAHSVREYHSMISILGKMRKFDTAWVLIDEMRGVKTGVSLVTPQTLLIMIRKYCAVHDV 143

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIA 214
            RA+  F +         +  F ++L  LC+ K V+ A  L    +  F  +  S+N++ 
Sbjct: 144 GRAINTFYAYKRFKFDMGIEEFQSLLSALCRYKNVQDAEQLMYCNKAVFPLNTKSFNIVL 203

Query: 215 NGWC-LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
           NGWC L+    ++  V +EM  RG+  ++ +Y  ++  Y +AG +    R + +MKK   
Sbjct: 204 NGWCNLIGSPRESERVWREMSKRGIRFDVVSYASMMSCYSKAGSLYRVLRLYKQMKKIGI 263

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
           E D   Y  ++H       +  A N+   M   GV P++ TYN++I+ LC+   VE A  
Sbjct: 264 EPDRKVYNAVIHALAKGRLVNEAFNLMKTMEEKGVAPNIVTYNSLIKPLCRARKVEEAKG 323

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
            F++M+ +   P   TY+  +R L  TGE   AL  + +M+   C+P   TY +LIR FC
Sbjct: 324 AFDDMLKRCISPTIRTYHAFLRIL-RTGEEVFAL--LEKMRKMGCQPINDTYIMLIRKFC 380

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
              ++E   +L+++M      P+  +Y +LI  +F+   + +L  A K   EM ++  +P
Sbjct: 381 RWRQLENVFKLWDEMSENGISPDRSSYIVLIHGLFL---NGELDAAHKYYTEMKEKQLLP 437


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 184/348 (52%), Gaps = 9/348 (2%)

Query: 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK 197
           Q ++  +       G+   A+K+   + +   R  +  +NTI+D LCK+K V +AY+ + 
Sbjct: 237 QVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYT 296

Query: 198 VF--RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
               RG F  DVI+Y+ +  G+CL  +   A  +L EM  + +NP++ TY I++    + 
Sbjct: 297 EMNSRGIF-PDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKE 355

Query: 256 GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
           G+++EA      M K   + +VVTY+T++ G+ +VGE+  A+ +F  MV   V PSV +Y
Sbjct: 356 GKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSY 415

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           N MI  LCK  SV+ A+ +  EM+ K  +PN+ TYN +I GLC +G +  AL+ +  +  
Sbjct: 416 NIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHH 475

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
                +V TY  L+   C    +++ + LF KM      PN  TY  LI  +    K   
Sbjct: 476 RGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLC---KGAR 532

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           L  A KL   ++ +G     +T+N ++ GL     +G+  E L ++S+
Sbjct: 533 LKNAQKLFQHILVKGCCIDVYTYNVMIGGLC---KEGMLDEALAMKSK 577



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 174/348 (50%), Gaps = 4/348 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           ++  ID   + +     +     M S  + P   T++ +   +  AG+   A  +   M 
Sbjct: 275 YNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMT 334

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTN 224
                  + ++  ++D LCKE K+++A NL  V  +   K +V++Y+ + +G+CLV   +
Sbjct: 335 LKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVH 394

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
            A ++   MV   +NP++ +YNI++ G  +   ++EA     EM  +    + VTY +++
Sbjct: 395 NAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLI 454

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            G    G I  A ++   + + G    V TY +++  LCK  +++ AI +F +M  +G  
Sbjct: 455 DGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQ 514

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           PN  TY  +I GLC    ++ A +    +    C  +V TYN++I   C  G ++  L +
Sbjct: 515 PNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEALAM 574

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
             KM    C+P+  T+ I+I S+F + ++D    A KLL EM+ +G +
Sbjct: 575 KSKMEDNGCIPDAVTFEIIIRSLFEKDENDK---AEKLLHEMIAKGLL 619



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/397 (26%), Positives = 195/397 (49%), Gaps = 12/397 (3%)

Query: 101 HSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           ++PS   F   +    +++ + T  +L  +M+   + P   T +I+   +   G+   + 
Sbjct: 128 NTPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCHLGQMAFSF 187

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGW 217
            +   + + G + +     T++  LC + +V+K+ +   KV    F+ + +SY  + NG 
Sbjct: 188 SVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGL 247

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           C +  T  A+++L+ + DR   P++  YN ++ G  +   + EA+ F+ EM  R    DV
Sbjct: 248 CKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDV 307

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           +TY+T++ GF + G++  A ++ + M    + P V TY  +I  LCK+  ++ A  +   
Sbjct: 308 ITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGV 367

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M  +G  PN  TY+ ++ G C  GE+  A +    M   E  P+V +YNI+I   C    
Sbjct: 368 MTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKS 427

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           ++  + L  +M     +PN  TYN LI  +    KS  +  A  L+ E+  RG      T
Sbjct: 428 VDEAMNLLREMLHKNVVPNTVTYNSLIDGLC---KSGRITSALDLMKELHHRGQPADVIT 484

Query: 458 FNRVLNGLLLIGNQGLAKEI---LRLQSRCGRLPRQF 491
           +  +L+G  L  NQ L K I   ++++ R G  P ++
Sbjct: 485 YTSLLDG--LCKNQNLDKAIALFMKMKER-GIQPNKY 518



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 82/173 (47%), Gaps = 3/173 (1%)

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           +  A + F+GM+     PS+  +  ++  L K      AI + ++M  KG  P+  T ++
Sbjct: 113 VHDAVSQFNGMLLMRNTPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSI 172

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           +I   CH G+M  +   +G++     +PN      L++  C  GE+++ L   +K+ +  
Sbjct: 173 LINCFCHLGQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQG 232

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
              N  +Y  L++ +    K  +   A KLL  + DR   P    +N +++GL
Sbjct: 233 FQMNQVSYGTLLNGLC---KIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGL 282



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 54/262 (20%), Positives = 107/262 (40%), Gaps = 21/262 (8%)

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
           +G+ PNL T +I++      GQ+  ++    ++ K   + + +T TT++ G      IK 
Sbjct: 5   KGIVPNLVTLSILINCLRHLGQMAFSFSVLGKILKLGYQPNSITLTTLMKGETRCA-IKL 63

Query: 296 ARNVFDGMVNGGVLPSVATYNAMI-----------------QVLCKKDSVENAILVFEEM 338
            R + D      +  S +  +++                  Q     D V +A+  F  M
Sbjct: 64  PRMIEDRSTRPLMWLSSSLSHSIPNFPPFLPNPTFPFYFHSQPPSIHDVVHDAVSQFNGM 123

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
           +     P+   +  ++  L        A+    +M+    EP++ T +ILI  FC  G++
Sbjct: 124 LLMRNTPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCHLGQM 183

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
                +  K+      PN      L+  + ++ +    L       ++V +GF   + ++
Sbjct: 184 AFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSL---HFHDKVVAQGFQMNQVSY 240

Query: 459 NRVLNGLLLIGNQGLAKEILRL 480
             +LNGL  IG    A ++LR+
Sbjct: 241 GTLLNGLCKIGETRCAIKLLRM 262


>gi|225443015|ref|XP_002267278.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Vitis vinifera]
          Length = 624

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/442 (26%), Positives = 209/442 (47%), Gaps = 13/442 (2%)

Query: 39  DPAALAS---------LILTSTDPR-TLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALH 88
           DP +L+S         ++    DP   L + L   S   TP LV+Q++KR  N    A  
Sbjct: 40  DPNSLSSSQYINEISRILSDFRDPHHDLERPLTAFSQKITPGLVEQVLKRCKNLGFSAHR 99

Query: 89  FFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGP-TQKTFAIIAER 147
           FF      P + HS  S+   +D+    + +  +W  +  M+         + F +I   
Sbjct: 100 FFLWAKRLPGFEHSKESYHILVDILGSSKQFPLIWDFLSDMRETRCCEICPEIFWLIFRA 159

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADV 207
           Y  A     A++ F  M + G +  +   + +L +LCK K V++A   F     +   + 
Sbjct: 160 YCRANLPGDAIRAFHQMGDFGVKAGVGDVDQLLYVLCKRKHVKQAQEFFDKVNVEVMPNA 219

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
            +Y+++  GW  V  +++A ++ +EM +RG   ++  YN +L+   + G ++EA++ F E
Sbjct: 220 KTYSILMRGWGDVGDSSEARKLFEEMRERGCAVDVVAYNSLLEALCKGGNVDEAYKLFRE 279

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M       D  +Y+  +  +  V +I  A  V D M    ++P+V TYN +++ LCK + 
Sbjct: 280 MGSNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEK 339

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
           V+ A  + +EM+ +G  P+  +YN +    C   E+ +AL  + RM+ + C P+  TYN+
Sbjct: 340 VDEAYQLLDEMIERGVSPDLWSYNAIQAFHCDHCEVNKALRLISRMEKENCMPDRHTYNM 399

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           +++     G  +R  +++  M      P   TY +++   F +KK   L  A K    M+
Sbjct: 400 VLKMLLRVGRFDRVTDVWGGMEERGFYPAASTYAVMVHG-FCKKKG-KLEEACKYFEMMI 457

Query: 448 DRGFMPRKFTFNRVLNGLLLIG 469
           D G  P   T   + N ++ +G
Sbjct: 458 DDGIPPYSCTVELLRNRVIGLG 479


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 106/363 (29%), Positives = 190/363 (52%), Gaps = 4/363 (1%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177
           ++  V  ++  M+   + P   T  ++ +    AG A+ A+ +  SM   G +  + ++N
Sbjct: 110 EFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYN 169

Query: 178 TILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
           ++L  LC+    +KA+ +FK         DV S+ ++  G+C V    +AL++ KEM  R
Sbjct: 170 SVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHR 229

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           G+ P+L +++ ++  + R G+++ A  +  EM+      D V YT ++ GF   G +  A
Sbjct: 230 GIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDA 289

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
             V D MV  G LP V TYN ++  LCK+  + +A  +  EM  +G  P+  T+  +I G
Sbjct: 290 LRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHG 349

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
            C  G++++AL+    M +    P++ TYN LI   C  G++++  +L++ M S    PN
Sbjct: 350 YCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPN 409

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKE 476
             TY+ILI S   + + +D   A   L EM+++G +P   T+N ++ G    GN    ++
Sbjct: 410 HVTYSILIDSHCEKGQVED---AFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQK 466

Query: 477 ILR 479
            L+
Sbjct: 467 FLQ 469



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 193/400 (48%), Gaps = 42/400 (10%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           +   W +   M    + P  ++F I+   +   G+ + A+KI+  M   G +  L SF+ 
Sbjct: 181 WDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSC 240

Query: 179 ILDLLCKEKKVEKAYNLFKVFR---------------GKF-------------------- 203
           ++ L  +  K++ A    +  R               G F                    
Sbjct: 241 LIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCG 300

Query: 204 -KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262
              DV++YN + NG C  +R   A  +L EM +RG+ P+L T+  ++ GY   G++++A 
Sbjct: 301 CLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKAL 360

Query: 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322
           + F  M  ++   D+VTY T++ G    G++ +A +++D M +  + P+  TY+ +I   
Sbjct: 361 QLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSH 420

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
           C+K  VE+A    +EM+ KG +PN  TYN +I+G C +G + +  +F+ +M  ++  P++
Sbjct: 421 CEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDL 480

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
            TYN LI  +    ++    +L   M      P++ TYN+LI+   V     +   AG +
Sbjct: 481 ITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQE---AGWI 537

Query: 443 LIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
             +M  +G  P ++T+  ++NG +  GN   +KE  +L  
Sbjct: 538 FEKMCAKGIEPDRYTYMSMINGHVTAGN---SKEAFQLHD 574



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/406 (27%), Positives = 193/406 (47%), Gaps = 41/406 (10%)

Query: 103 PSSFDHAIDLAARLR--DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P    H + + AR R  D      LV  M S  L P   T+  + +    +G  D+A ++
Sbjct: 128 PDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEV 187

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVIS---------- 209
           F  M + G    + SF  ++   C+  ++E+A  ++K  R +  K D++S          
Sbjct: 188 FKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFAR 247

Query: 210 -------------------------YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
                                    Y ++  G+C     + AL V  EMV  G  P++ T
Sbjct: 248 RGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVT 307

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           YN +L G  +  ++ +A     EM++R    D+ T+TT++HG+ + G++ +A  +FD M+
Sbjct: 308 YNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTML 367

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
           N  + P + TYN +I  +C++  ++ A  ++++M  +   PN  TY+++I   C  G++E
Sbjct: 368 NQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVE 427

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
            A  F+  M +    PN+ TYN +I+ +C +G + +G +  +KM      P+L TYN LI
Sbjct: 428 DAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLI 487

Query: 425 SSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
                  K D +  A KLL  M      P   T+N ++NG  + GN
Sbjct: 488 HGYI---KEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGN 530



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 142/278 (51%), Gaps = 5/278 (1%)

Query: 192 AYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
           AY L  VF    + +  + N++ + +C     +K   V+ EM  R + P++ T+N+++  
Sbjct: 82  AYRL--VFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDA 139

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
            FRAG  E A      M  +  +  +VTY +++ G    G   +A  VF  M + GV P 
Sbjct: 140 RFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPD 199

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
           V ++  +I   C+   +E A+ +++EM  +G  P+  +++ +I      G+M+ A+ ++ 
Sbjct: 200 VRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLR 259

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
            M+     P+   Y ++I  FC AG +   L + ++M    CLP++ TYN L++ +   +
Sbjct: 260 EMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKER 319

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
           +   LL A  LL EM +RG  P   TF  +++G  + G
Sbjct: 320 R---LLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEG 354



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 149/340 (43%), Gaps = 36/340 (10%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           SF   I L AR          +  M+   L P    + ++   +  AG    A+++   M
Sbjct: 237 SFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEM 296

Query: 165 HEHGCRQSLNSFNTILDLLCKEK-----------------------------------KV 189
              GC   + ++NT+L+ LCKE+                                   K+
Sbjct: 297 VGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKL 356

Query: 190 EKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
           +KA  LF  +   + + D+++YN + +G C     +KA ++  +M  R + PN  TY+I+
Sbjct: 357 DKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSIL 416

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           +  +   GQ+E+A+ F  EM  +    +++TY +I+ G+   G + + +     M+   V
Sbjct: 417 IDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKV 476

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
            P + TYN +I    K+D + +A  +   M  +   P+  TYN++I G    G ++ A  
Sbjct: 477 SPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGW 536

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
              +M     EP+  TY  +I     AG  +   +L ++M
Sbjct: 537 IFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEM 576



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 123/254 (48%), Gaps = 36/254 (14%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L++ M+   + P   TF  +   Y   GK D+A+++F +M     R  + ++NT++D +C
Sbjct: 327 LLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMC 386

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           ++  ++KA +L+     +    + ++Y+++ +  C   +   A   L EM+++G+ PN+ 
Sbjct: 387 RQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIM 446

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEM----------------------------------- 268
           TYN ++KGY R+G + +  +F  +M                                   
Sbjct: 447 TYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMM 506

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
           +K K + DVVTY  +++GF V G ++ A  +F+ M   G+ P   TY +MI       + 
Sbjct: 507 EKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNS 566

Query: 329 ENAILVFEEMVGKG 342
           + A  + +EM+ +G
Sbjct: 567 KEAFQLHDEMLQRG 580



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 3/110 (2%)

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
           E N  T NI++  +C A E ++   +  +M      P++ T+N+++ + F   ++ D   
Sbjct: 92  EVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARF---RAGDAEA 148

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           A  L+  MV +G  P   T+N VL GL   G    A E+ +     G  P
Sbjct: 149 AMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAP 198


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/463 (27%), Positives = 222/463 (47%), Gaps = 28/463 (6%)

Query: 24  PLTTTSPAPLPPAAADPAALASLILTSTDPRTLTQTLHCP-------------SLHWTPQ 70
           P  T  P+P       P +  S  + S+ P+T   + H P             S H    
Sbjct: 2   PSKTLLPSPSFKPNLSPLSTHSSTIPSSIPQT--SSTHHPNPILPAAFNREEISFHHPLS 59

Query: 71  LVDQIIKRLWNHALKALHFFNIL-SYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRM 129
           L  +  K     A++A HFF+++   HP      SSF+  +   A++  Y  +++L + M
Sbjct: 60  LFLRNCKTGNITAIQAFHFFDLMMRSHPI--PPISSFNRLLGGLAKINHYSQLFSLYNEM 117

Query: 130 KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV 189
           +   L P   T +I+A    +  +   A+     +   G   ++ ++ T++  LC E ++
Sbjct: 118 RLAGLSPDLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRI 177

Query: 190 EKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR----GLN--PNL 242
            +A  LF ++ +     + ++Y  +  G C     N AL++ KEM++     G+N  P +
Sbjct: 178 SEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGV 237

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TY+I++ G  + G+ +EA   F EMK +    DV++Y+T++HGF   G+  +++++FD 
Sbjct: 238 ITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDE 297

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           MV+ GV P + T++ +I  LCK+  V  A  + E M+ +G +PN  TYN +I G C  G+
Sbjct: 298 MVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGD 357

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           +  A E    M     EP+  +Y  LI  +C   +++  + L+ +M      PN+ TY  
Sbjct: 358 LNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGT 417

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           L+  +F + K  D   A KL   M   G       +   L+GL
Sbjct: 418 LLKGLFQKGKVGD---AKKLFGVMKTYGVSANSQIYGIFLDGL 457



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 102/343 (29%), Positives = 179/343 (52%), Gaps = 6/343 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L   MK+  + P   +++ +   +  AGK D++  +F  M + G +  + +F+ ++D LC
Sbjct: 259 LFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLC 318

Query: 185 KEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           KE KV +A  L +V   RG    ++I+YN + +G+C+V   N A E+   M  +GL P+ 
Sbjct: 319 KEGKVTEAKKLLEVMIQRG-IVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDE 377

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            +Y  ++ GY +  +++EA   + EM +     +V TY T++ G    G++  A+ +F  
Sbjct: 378 ISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGV 437

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M   GV  +   Y   +  LCK D +  A+ +F E+    +  N   Y+ +I GLC  G+
Sbjct: 438 MKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGK 497

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           +E A E   ++  +  +P+V TYNI+I  FC  G+++    LFEKM    C P++  YN 
Sbjct: 498 LETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNT 557

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           L+       K ++++   KLL +MV +   P   +   V++ L
Sbjct: 558 LLCGFCEGNKLEEVI---KLLHKMVQKDVSPNAASCTIVVDML 597



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 172/331 (51%), Gaps = 4/331 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T++II +     G+ D A ++F  M   G    + S++T++   C   K +++ +L
Sbjct: 235 PGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHL 294

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F ++     + D+++++V+ +  C   +  +A ++L+ M+ RG+ PNL TYN ++ G+  
Sbjct: 295 FDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCM 354

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G +  A   FL M  +  E D ++YTT+++G+    ++K A N+++ M+  G  P+V T
Sbjct: 355 VGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTT 414

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y  +++ L +K  V +A  +F  M   G   NS  Y + + GLC    +  A+E    +K
Sbjct: 415 YGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELK 474

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
               + N++ Y+ LI   C AG++E   ELFEK+      P++ TYNI+I       + D
Sbjct: 475 SYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVD 534

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           +   A  L  +M + G  P    +N +L G 
Sbjct: 535 N---ANILFEKMEENGCTPDIIAYNTLLCGF 562



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 150/307 (48%), Gaps = 10/307 (3%)

Query: 191 KAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL 249
           +A++ F +  R      + S+N +  G   +   ++   +  EM   GL+P+L T +I+ 
Sbjct: 74  QAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILA 133

Query: 250 KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
                  ++ EA      + +R    +VVTYTT++ G  +   I  A  +F  M   G  
Sbjct: 134 NCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCT 193

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMV------GKGYMPNSTTYNVVIRGLCHTGEM 363
           P+  TY  +I+ LC+  +V  A+ + +EM+      G    P   TY+++I GLC  G  
Sbjct: 194 PNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGRE 253

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A E    MK     P+V +Y+ LI  FC AG+ ++   LF++M      P++ T+++L
Sbjct: 254 DEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVL 313

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I ++    K  +   A KLL  M+ RG +P   T+N +++G  ++G+   A+E+      
Sbjct: 314 IDTLCKEGKVTE---AKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPS 370

Query: 484 CGRLPRQ 490
            G  P +
Sbjct: 371 KGLEPDE 377



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 67/148 (45%), Gaps = 2/148 (1%)

Query: 84  LKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAI 143
            +A+  FN L  +  +  +  ++   ID   +     T W L  ++    L P   T+ I
Sbjct: 464 FEAMELFNELKSY-NFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNI 522

Query: 144 IAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGK 202
           +   +   G+ D A  +F  M E+GC   + ++NT+L   C+  K+E+   L  K+ +  
Sbjct: 523 MIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKD 582

Query: 203 FKADVISYNVIANGWCLVKRTNKALEVL 230
              +  S  ++ +  C  ++  K +++L
Sbjct: 583 VSPNAASCTIVVDMLCKDEKYKKFVDLL 610


>gi|15239161|ref|NP_201383.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170571|sp|Q9FH87.1|PP447_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g65820
 gi|9758569|dbj|BAB09050.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010728|gb|AED98111.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 128/496 (25%), Positives = 219/496 (44%), Gaps = 77/496 (15%)

Query: 56  LTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAAR 115
           L   L+   +   P L+++++ R  +       FF   +  P Y HS   +   + + ++
Sbjct: 100 LELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQPRYCHSIEVYKSMVKILSK 159

Query: 116 LRDYRTVWTLVHRMKSLSLGPTQ-KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           +R +  VW L+  M+  +    + + F ++ +R+ SA    +A+++   M + G      
Sbjct: 160 MRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEPDEY 219

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
            F  +LD LCK   V+ A  LF+  R +F  ++  +  +  GWC V +  +A  VL +M 
Sbjct: 220 VFGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMN 279

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQ-----------------------------------IE 259
           + G  P++  Y  +L GY  AG+                                   +E
Sbjct: 280 EAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRME 339

Query: 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319
           EA + F+EM++ +CE DVVTYT +V GF   G+I +   V D M+  G++PS  TY  ++
Sbjct: 340 EAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIM 399

Query: 320 QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
               KK+S E  + + E+M    Y P+   YNVVIR  C  GE++ A+     M+++   
Sbjct: 400 VAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLS 459

Query: 380 PNVQTYNILIRYFCDAG-----------EIERGLELFEKMGS------------------ 410
           P V T+ I+I      G            + RGL    + G+                  
Sbjct: 460 PGVDTFVIMINGLASQGCLLEASDHFKEMVTRGLFSVSQYGTLKLLLNTVLKDKKLEMAK 519

Query: 411 ---------GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
                    G C  N+ ++ I I ++F +    +   A    IEM++  FMP+  TF ++
Sbjct: 520 DVWSCITSKGACELNVLSWTIWIHALFSKGYEKE---ACSYCIEMIEMDFMPQPDTFAKL 576

Query: 462 LNGLLLIGNQGLAKEI 477
           + GL  + N+  A EI
Sbjct: 577 MKGLKKLYNREFAGEI 592



 Score = 42.7 bits (99), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 77/179 (43%), Gaps = 5/179 (2%)

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKG-YMPNSTTYNVVIRGLCHTGEMERALEF 369
           S+  Y +M+++L K         + EEM  +   +     + V+++       +++A+E 
Sbjct: 146 SIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKKAIEV 205

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
           +  M     EP+   +  L+   C  G ++   +LFE M     + NL  +  L+     
Sbjct: 206 LDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRFPV-NLRYFTSLLYGWC- 263

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             +   ++ A  +L++M + GF P    +  +L+G    G    A ++LR   R G  P
Sbjct: 264 --RVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEP 320


>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 108/347 (31%), Positives = 184/347 (53%), Gaps = 7/347 (2%)

Query: 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK 197
           Q ++  +       G    A+K+   +     + ++  +NTI+D LCK + V +AY LF 
Sbjct: 164 QVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFS 223

Query: 198 VFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256
               K   ADV++Y  +  G+C+  +  +A+ +L EMV + +NPN+ TYNI++    + G
Sbjct: 224 EMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEG 283

Query: 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
           +++EA      M K   + DV+TY+T++ G+ +V E+K+A++VF+ M   GV P V +Y 
Sbjct: 284 KVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLMGVTPDVHSYT 343

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
            +I   CK   V+ A+ +F+EM  K  +P   TY+ +I GLC +G +    + +  M+D 
Sbjct: 344 ILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDR 403

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
               NV TYN LI   C  G ++R + LF KM      P   T+ IL+  +    K   L
Sbjct: 404 GIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLDGLC---KGGRL 460

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
             A +   +++ +G+    + +N ++NG      QGL +E L + S+
Sbjct: 461 KDAQEAFQDLLTKGYHLDVYKYNVMINGHC---KQGLLEEALTMLSK 504



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 182/368 (49%), Gaps = 6/368 (1%)

Query: 101 HSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           H+P    F+  +D  A+++ Y T  +L HR++   + P   T  I+   +   G+     
Sbjct: 55  HTPPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGF 114

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGW 217
            +   + + G +    +F T++  LC + +V KA +   K+     K D +SY  + NG 
Sbjct: 115 SVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLINGV 174

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           C +  T  A+++++++  R   PN+  YN ++    +   + EA+  F EM  +    DV
Sbjct: 175 CKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADV 234

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           VTYTT+++GF +  ++K A  + + MV   + P+V TYN ++  LCK+  V+ A  V   
Sbjct: 235 VTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAV 294

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M+     P+  TY+ ++ G     E+++A      M      P+V +Y ILI  FC    
Sbjct: 295 MLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKM 354

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           ++  L LF++M     +P + TY+ LI  +    KS  +     L+ EM DRG      T
Sbjct: 355 VDEALNLFKEMHQKNMVPGIVTYSSLIDGLC---KSGRISYVWDLIDEMRDRGIPANVIT 411

Query: 458 FNRVLNGL 465
           +N +++GL
Sbjct: 412 YNSLIDGL 419



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 157/300 (52%), Gaps = 8/300 (2%)

Query: 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ 171
           +A++L++      L++ M   ++ P   T+ I+ +     GK   A  +   M +   + 
Sbjct: 246 IASKLKE---AIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKP 302

Query: 172 SLNSFNTILD---LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
            + +++T++D   L+ + KK +  +N   +       DV SY ++ NG+C  K  ++AL 
Sbjct: 303 DVITYSTLMDGYFLVYELKKAQHVFNAMSLM--GVTPDVHSYTILINGFCKNKMVDEALN 360

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           + KEM  + + P + TY+ ++ G  ++G+I   W    EM+ R    +V+TY +++ G  
Sbjct: 361 LFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLC 420

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G + RA  +F+ M + G+ P   T+  ++  LCK   +++A   F++++ KGY  +  
Sbjct: 421 KNGHLDRAIALFNKMKDQGIRPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVY 480

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            YNV+I G C  G +E AL  + +M+++ C PN  T++I+I       E ++  +L  +M
Sbjct: 481 KYNVMINGHCKQGLLEEALTMLSKMEENGCVPNAVTFDIIINALFKKDENDKAEKLLRQM 540



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 111/217 (51%), Gaps = 1/217 (0%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M  + + P   ++ I+   +      D A+ +F  MH+      + ++++++D LCK  +
Sbjct: 330 MSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGR 389

Query: 189 VEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           +   ++L    R +   A+VI+YN + +G C     ++A+ +  +M D+G+ P   T+ I
Sbjct: 390 ISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTI 449

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           +L G  + G++++A   F ++  +   +DV  Y  +++G    G ++ A  +   M   G
Sbjct: 450 LLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEENG 509

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            +P+  T++ +I  L KKD  + A  +  +M+ +G +
Sbjct: 510 CVPNAVTFDIIINALFKKDENDKAEKLLRQMICRGLL 546



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 117/259 (45%), Gaps = 3/259 (1%)

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
           ++  + A+     M+     P +  +N +L  + +      A      ++ +  + D++T
Sbjct: 37  IQNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLIT 96

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
              +++ F  +G+I    +V   ++  G  P   T+  +I+ LC K  V  A+   ++++
Sbjct: 97  LNILINCFCHMGQITFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLL 156

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            +G   +  +Y  +I G+C  G+   A++ V ++     +PNV+ YN +I   C    + 
Sbjct: 157 AQGIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVS 216

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
               LF +M +     ++ TY  LI    +  K   L  A  LL EMV +   P  +T+N
Sbjct: 217 EAYGLFSEMTAKGISADVVTYTTLIYGFCIASK---LKEAIGLLNEMVLKTINPNVYTYN 273

Query: 460 RVLNGLLLIGNQGLAKEIL 478
            +++ L   G    AK +L
Sbjct: 274 ILVDALCKEGKVKEAKNVL 292


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 189/384 (49%), Gaps = 9/384 (2%)

Query: 102 SPSSFDHAI--DLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           SPS   ++I  D   +   YR    L+  M++    P   T+ ++     + G  D A+ 
Sbjct: 194 SPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALN 253

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWC 218
           I   +  HGC+    ++  +L  LC  ++ ++   LF ++   K   D +++N I    C
Sbjct: 254 ILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLC 313

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
                ++A++V+  M + G  P++ TY+ +L G    G++++A      +K   C+ D +
Sbjct: 314 QQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTI 373

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
            YTT++ G   + + + A  +   MV     P   T+N +I  LC+K  V+ AI V E+M
Sbjct: 374 AYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQM 433

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
              G  P+  TYN +I GLC+   ++ A+E +  ++   C+P++ T+N L++  C     
Sbjct: 434 SENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRW 493

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           E   +L   M    C P+  T+N +I+S+  +     LL A + L  M + G +P + T+
Sbjct: 494 EDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGL---LLQAIETLKIMAENGCIPNQSTY 550

Query: 459 NRVLNGLLLIGNQGLAKEILRLQS 482
           N V++ LL     G  +E L+L S
Sbjct: 551 NIVVDALL---KAGKTQEALKLLS 571



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 175/367 (47%), Gaps = 10/367 (2%)

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
           A R+ D R +      +  +   P   TF  +       G+   A+ +F  M   GC  S
Sbjct: 143 AGRIEDARRL------ISGMPFPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPS 196

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLK 231
           + +++ +LD  CK     +A  L    R K  + D+++YNV+ N  C     ++AL +L 
Sbjct: 197 VVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILS 256

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
           ++   G  P+  TY  VLK    + + +E    F EM   KC  D VT+ TIV      G
Sbjct: 257 DLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQG 316

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
            + RA  V D M   G +P + TY++++  LC    V++A+ +   +   G  P++  Y 
Sbjct: 317 LVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYT 376

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
            V++GLC   + E A E +  M   +C P+  T+N +I   C  G ++R +++ E+M   
Sbjct: 377 TVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSEN 436

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
            C P++ TYN +I  +   +  DD   A +LL  +   G  P   TFN +L GL  +   
Sbjct: 437 GCNPDIVTYNSIIDGLCNERCIDD---AMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRW 493

Query: 472 GLAKEIL 478
             A++++
Sbjct: 494 EDAEQLM 500



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 167/368 (45%), Gaps = 8/368 (2%)

Query: 92  ILSYHPTYAHSPSSFDHAIDLAA--RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149
           +LS   +Y   P +  +   L     +  +     L+  M      P + TF  +     
Sbjct: 359 LLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLC 418

Query: 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVI 208
             G  DRA+K+   M E+GC   + ++N+I+D LC E+ ++ A  L    +    K D++
Sbjct: 419 QKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIV 478

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           ++N +  G C V R   A +++  M+     P+ TT+N V+    + G + +A      M
Sbjct: 479 TFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIM 538

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
            +  C  +  TY  +V      G+ + A  +  GM NG   P + TYN +I  + K   +
Sbjct: 539 AENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNG--TPDLITYNTVISNITKAGKM 596

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           E A+ +   MV  G  P++ TY  +  G+C     +RA+  + R++D    P+   YN +
Sbjct: 597 EEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDI 656

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           +  FC     +  ++ F  M S  C+P+  TY IL+ ++      D+   A +LL+ +  
Sbjct: 657 LLGFCQNWRTDIAIDCFAHMVSSGCMPDESTYIILLEALAYECLLDE---AKQLLVNLCS 713

Query: 449 RGFMPRKF 456
            G + +  
Sbjct: 714 LGVLDKSL 721



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 156/344 (45%), Gaps = 37/344 (10%)

Query: 177 NTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWC------------------ 218
           N ++  LC   +V  A  +F        A V++YN + NG+C                  
Sbjct: 102 NILIKRLCSGGRVADAERVFATLGAS--ATVVTYNTMVNGYCRAGRIEDARRLISGMPFP 159

Query: 219 --------LVK------RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
                   L++      R   AL V  +M+ RG +P++ TY+I+L    +A    +A   
Sbjct: 160 PDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVL 219

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
             EM+ + CE D+VTY  +++     G++  A N+   + + G  P   TY  +++ LC 
Sbjct: 220 LDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCG 279

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
            +  +    +F EM      P+  T+N ++  LC  G ++RA++ V  M +  C P++ T
Sbjct: 280 SERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVT 339

Query: 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLI 444
           Y+ ++   CD G ++  +EL  ++ S  C P+   Y  ++  +   ++ +    A +L+ 
Sbjct: 340 YSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEH---AEELMA 396

Query: 445 EMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           EMV     P + TFN V+  L   G    A +++   S  G  P
Sbjct: 397 EMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNP 440



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 142/277 (51%), Gaps = 10/277 (3%)

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           V+  N++    C   R   A  V   +   G +  + TYN ++ GY RAG+IE+A R   
Sbjct: 98  VVPCNILIKRLCSGGRVADAERVFATL---GASATVVTYNTMVNGYCRAGRIEDARRLIS 154

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
            M       D  T+  ++    V G +  A  VFD M++ G  PSV TY+ ++   CK  
Sbjct: 155 GMPFPP---DTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKAS 211

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
               A+++ +EM  KG  P+  TYNV+I  +C+ G+++ AL  +  +    C+P+  TY 
Sbjct: 212 GYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYT 271

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            +++  C +   +   ELF +M S  C P+  T+N +++S+  +   D    A K++  M
Sbjct: 272 PVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDR---AIKVVDHM 328

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL-RLQS 482
            + G +P   T++ +L+GL  +G    A E+L RL+S
Sbjct: 329 SEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKS 365


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 177/370 (47%), Gaps = 4/370 (1%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           W +   M+   + P   T++ + E Y      + A K+   M E GC  ++ ++NT++  
Sbjct: 228 WKVRGFMEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGG 287

Query: 183 LCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           LC+   +E+A+   K         D  +Y  I NG C   R ++A  +L EM   GL PN
Sbjct: 288 LCRAGAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPN 347

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           +  Y+ ++ G+ R G  +EA++   EM     + + +TY  ++ G   +G + RA  +  
Sbjct: 348 VVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILK 407

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M   G +    TYN +I+   ++ + E A L+  EM   G  PN  TY+++I GLC  G
Sbjct: 408 QMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIG 467

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
           E ERA   + +M  D  +PN   Y  LI  +C  G      E  +KM      P+L  YN
Sbjct: 468 ESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYN 527

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481
            LI  +    K D+ +   +   EM+++GF P  FT+  +++G  + GN   A+++L   
Sbjct: 528 SLIIGLSNVGKMDEAI---EYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQM 584

Query: 482 SRCGRLPRQF 491
              G  P  F
Sbjct: 585 LNSGLNPNDF 594



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 175/362 (48%), Gaps = 4/362 (1%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
            M+   L P   T+  I       G+ D+A  +   M   G   ++  ++T++D   ++ 
Sbjct: 303 EMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQG 362

Query: 188 KVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
             ++A+ + K       + + I+Y+ +  G C + R  +A  +LK+M   G   +  TYN
Sbjct: 363 NADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYN 422

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
           +V++G+ R    EEA+    EM+K     +V TY+ I++G   +GE +RA  + + M+  
Sbjct: 423 LVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIAD 482

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G+ P+   Y  +I   C++ S   A    ++M  +   P+   YN +I GL + G+M+ A
Sbjct: 483 GLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEA 542

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
           +E+   M +   +PN  TY  LI  +  AG +E+  +L  +M +    PN   Y  ++  
Sbjct: 543 IEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEG 602

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGR 486
            F   KSD+L      L  M+++G MP    +  V++ L   G+   A  +L +  + G 
Sbjct: 603 YF---KSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGL 659

Query: 487 LP 488
           +P
Sbjct: 660 VP 661



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 92/397 (23%), Positives = 180/397 (45%), Gaps = 39/397 (9%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID   R  +    + +V  M +  + P + T+  +       G+  RA +I   M + G 
Sbjct: 355 IDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGY 414

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTNKALE 228
                ++N +++   ++   E+A+ L    R G    +V +Y++I NG C +  + +A  
Sbjct: 415 MADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASG 474

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFR---------------------------------- 254
           +L++M+  GL PN   Y  ++ GY R                                  
Sbjct: 475 LLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLS 534

Query: 255 -AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
             G+++EA  ++ EM ++  + +  TY  ++HG+ + G +++A  +   M+N G+ P+  
Sbjct: 535 NVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDF 594

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
            Y  +++   K D++E      + M+ KG MP++  Y +VI  L  +G M+ A+  +  +
Sbjct: 595 IYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVI 654

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
           + +   P+   Y  LI  FC A ++E+ + L ++M      P +  YN LI       KS
Sbjct: 655 EKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFC---KS 711

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
           DD+  A  +   ++ +G  P   T+  +++G    G+
Sbjct: 712 DDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGD 748



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 160/367 (43%), Gaps = 4/367 (1%)

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           Y     +++  I+   R  +    + L++ M+   + P   T++II       G+++RA 
Sbjct: 414 YMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERAS 473

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA-YNLFKVFRGKFKADVISYNVIANGW 217
            +   M   G + +   +  ++   C+E     A   L K+ R     D+  YN +  G 
Sbjct: 474 GLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGL 533

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
             V + ++A+E   EM+++G  PN  TY  ++ GY  AG +E+A +   +M       + 
Sbjct: 534 SNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPND 593

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
             Y  I+ G+     +++  +    M+  G++P    Y  +I  L     ++ A+ V   
Sbjct: 594 FIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSV 653

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           +   G +P+S  Y  +I G C   +ME+A+  +  M     EP +  YN LI  FC + +
Sbjct: 654 IEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDD 713

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           I     +F  +      PN  TY  LI       K+ D+  A  L  EM+  G  P  F 
Sbjct: 714 ISHARNIFNSIICKGLPPNCVTYTTLIDGYC---KAGDIRDAIDLYNEMLTEGVAPDAFV 770

Query: 458 FNRVLNG 464
           ++ +  G
Sbjct: 771 YSVLAAG 777



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 169/367 (46%), Gaps = 7/367 (1%)

Query: 102 SPSSFDHAIDLAA--RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           SP+ + ++I +    ++ +      L+ +M +  L P    +A +   Y   G    A +
Sbjct: 450 SPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACE 509

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWC 218
               M        L  +N+++  L    K+++A   + ++    F+ +  +Y  + +G+ 
Sbjct: 510 TLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYS 569

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
           +     KA ++L +M++ GLNPN   Y  +L+GYF++  +E+       M ++    D  
Sbjct: 570 MAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNR 629

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
            Y  ++H     G ++ A +V   +   G++P    Y ++I   CK   +E A+ + +EM
Sbjct: 630 LYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEM 689

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
             KG  P  + YN +I G C + ++  A      +      PN  TY  LI  +C AG+I
Sbjct: 690 AKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDI 749

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
              ++L+ +M +    P+   Y++L +       S DL  A  +  EM+ RG+     +F
Sbjct: 750 RDAIDLYNEMLTEGVAPDAFVYSVLAAGC---SNSGDLQQALFITEEMIARGYAIIS-SF 805

Query: 459 NRVLNGL 465
           N +++G 
Sbjct: 806 NTLVHGF 812



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 142/302 (47%), Gaps = 5/302 (1%)

Query: 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH 167
           H   +A  L        L+H+M +  L P    +A I E Y  +   ++      SM E 
Sbjct: 566 HGYSMAGNLE---KAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEK 622

Query: 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKA 226
           G       +  ++  L     ++ A ++  V  +     D + Y  + +G+C      KA
Sbjct: 623 GLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKA 682

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
           + +L EM  +G+ P ++ YN ++ G+ ++  I  A   F  +  +    + VTYTT++ G
Sbjct: 683 VGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDG 742

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
           +   G+I+ A ++++ M+  GV P    Y+ +         ++ A+ + EEM+ +GY   
Sbjct: 743 YCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYAII 802

Query: 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
           S+ +N ++ G C  G+++  ++F+  M D +  P++ T   ++    +AG++     +F 
Sbjct: 803 SS-FNTLVHGFCKRGKLQETVKFLHVMMDKDIVPSLLTVENIVIGLGEAGKLSEAHTIFV 861

Query: 407 KM 408
           ++
Sbjct: 862 EL 863



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 155/347 (44%), Gaps = 25/347 (7%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+  +   Y  AG  ++A ++   M   G   +   +  IL+   K   +EK  + 
Sbjct: 556 PNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSST 615

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            K    K    D   Y ++ +          A+ VL  +   GL P+   Y  ++ G+ +
Sbjct: 616 LKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCK 675

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
           A  +E+A     EM K+  E  +  Y  ++ GF    +I  ARN+F+ ++  G+ P+  T
Sbjct: 676 AADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVT 735

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y  +I   CK   + +AI ++ EM+ +G  P++  Y+V+  G  ++G++++AL F+    
Sbjct: 736 YTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQAL-FITEEM 794

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY-NILIS-------- 425
                  + ++N L+  FC  G+++  ++    M     +P+L T  NI+I         
Sbjct: 795 IARGYAIISSFNTLVHGFCKRGKLQETVKFLHVMMDKDIVPSLLTVENIVIGLGEAGKLS 854

Query: 426 ---SMFVR--------KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
              ++FV         + +D L     L  +M+++G +P     N +
Sbjct: 855 EAHTIFVELQQKNASHRDTDHL---SSLFTDMINQGLVPLDVIHNMI 898



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 132/281 (46%), Gaps = 3/281 (1%)

Query: 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
           +V+ + +    R     EV+  M D GL P+L   N +LK   RA  ++  W+    M+ 
Sbjct: 177 DVLVDTYKKTGRVRDGAEVVLLMKDLGLAPSLRCCNGLLKDLLRADALDLLWKVRGFMEG 236

Query: 271 RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
                DV TY+T++  +  V +++ A+ V + M   G   +V TYN +I  LC+  ++E 
Sbjct: 237 AGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEE 296

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           A    +EM   G +P+  TY  +I GLC  G  ++A   +  M      PNV  Y+ LI 
Sbjct: 297 AFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLID 356

Query: 391 YFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450
            F   G  +   ++ ++M +    PN  TY+ LI  +    K   +  A ++L +M   G
Sbjct: 357 GFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLC---KLGRMGRASRILKQMTKIG 413

Query: 451 FMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           +M    T+N V+ G L   N+  A  +L    + G  P  +
Sbjct: 414 YMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVY 454



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/281 (19%), Positives = 124/281 (44%), Gaps = 26/281 (9%)

Query: 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH 167
           H +  +  ++   +V +++ +     L P    +  +   +  A   ++AV +   M + 
Sbjct: 636 HNLSSSGHMQAAVSVLSVIEKN---GLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKK 692

Query: 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKA 226
           G    ++ +N ++D  CK   +  A N+F     K    + ++Y  + +G+C       A
Sbjct: 693 GIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDA 752

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
           +++  EM+  G+ P+   Y+++  G   +G +++A     EM  R   I + ++ T+VHG
Sbjct: 753 IDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYAI-ISSFNTLVHG 811

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE--------- 337
           F   G+++        M++  ++PS+ T   ++  L +   +  A  +F E         
Sbjct: 812 FCKRGKLQETVKFLHVMMDKDIVPSLLTVENIVIGLGEAGKLSEAHTIFVELQQKNASHR 871

Query: 338 -----------MVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
                      M+ +G +P    +N +I+  C  G +++AL
Sbjct: 872 DTDHLSSLFTDMINQGLVPLDVIHN-MIQSHCKQGYLDKAL 911



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 100/214 (46%), Gaps = 3/214 (1%)

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           V    +V  +   G ++    V   M + G+ PS+   N +++ L + D+++    V   
Sbjct: 174 VVLDVLVDTYKKTGRVRDGAEVVLLMKDLGLAPSLRCCNGLLKDLLRADALDLLWKVRGF 233

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M G G  P+  TY+ +I   C   ++E A + V  M++  C  NV TYN LI   C AG 
Sbjct: 234 MEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGA 293

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           IE      ++M     +P+  TY  +I+ +  R + D    A  LL EM   G MP    
Sbjct: 294 IEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQ---AKCLLDEMSCAGLMPNVVV 350

Query: 458 FNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           ++ +++G +  GN   A +I++  S  G  P + 
Sbjct: 351 YSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKI 384



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/239 (20%), Positives = 107/239 (44%), Gaps = 16/239 (6%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           S ++  ID   +  D      + + +    L P   T+  + + Y  AG    A+ ++  
Sbjct: 699 SCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNE 758

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRT 223
           M   G       ++ +         +++A  + +    +  A + S+N + +G+C   + 
Sbjct: 759 MLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYAIISSFNTLVHGFCKRGKL 818

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            + ++ L  M+D+ + P+L T   ++ G   AG++ EA   F+E++++       ++   
Sbjct: 819 QETVKFLHVMMDKDIVPSLLTVENIVIGLGEAGKLSEAHTIFVELQQKN-----ASHRDT 873

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
            H            ++F  M+N G++P    +N MIQ  CK+  ++ A+++ + +V KG
Sbjct: 874 DH----------LSSLFTDMINQGLVPLDVIHN-MIQSHCKQGYLDKALMLHDALVAKG 921


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 109/385 (28%), Positives = 193/385 (50%), Gaps = 7/385 (1%)

Query: 100  AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
            +H   SF   I    R   +     L+ +M  L   P+  T   +   +    +   AV 
Sbjct: 647  SHDLYSFTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVS 706

Query: 160  IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWC 218
            +  SM E G   ++  +NT+++ LCK + +  A  +F     K   AD ++YN + +G C
Sbjct: 707  LVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLC 766

Query: 219  LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
               R   A  +L++MV R ++PN+  +  ++  + + G + EA   + EM +R    +++
Sbjct: 767  NSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNIL 826

Query: 279  TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
            TY ++++GF + G +  A+++FD MV+ G  P V TYN +I   CK   VE+ + +F EM
Sbjct: 827  TYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEM 886

Query: 339  VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
              +G + ++ TYN +I G C  G++  A +   RM D    P++ TYNIL+   C+ G+I
Sbjct: 887  THQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKI 946

Query: 399  ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
            E+ L + E +       ++ TYNI+I  M    ++D +  A  L   +  +G       +
Sbjct: 947  EKALVMVEDLQKNQMDVDIITYNIIIQGMC---RNDKVKEAWCLFRSLTRKGVKLDAIAY 1003

Query: 459  NRVLNGLLLIGNQGLAKEILRLQSR 483
              +++GL      GL +E  +L +R
Sbjct: 1004 ITMISGLC---RNGLRREADKLCTR 1025



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 181/382 (47%), Gaps = 5/382 (1%)

Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           +H   SF   I    R        +++ +M  L   P+  TF  +   +    +   A  
Sbjct: 97  SHDLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFS 156

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGW 217
           +  SM + G   ++  +NT++D LCK   V  A  L      +G+  AD+++YN +  G 
Sbjct: 157 LVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGL 216

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           C      +A  +L++M  R +NP++ T+  ++  + + G ++EA   + +M +     + 
Sbjct: 217 CYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNT 276

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           VTY ++++G  + G +  A+  FD M + G  P+V TYN +I   CK   VE+ + +F+ 
Sbjct: 277 VTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQR 336

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M  +G + ++ TYN +I G C  G++  A +    M      P++ T+ IL+   C  GE
Sbjct: 337 MYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGE 396

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           I   +  F  M SG     +  YNI+I  +    K+D +  A +L   +   G  P   T
Sbjct: 397 IGSAMVKFNDMRSGEKYLGIVAYNIMIHGLC---KADKVEEAWELFCRLPVEGVKPDART 453

Query: 458 FNRVLNGLLLIGNQGLAKEILR 479
           +  ++ GL   G +  A E+ R
Sbjct: 454 YTIMILGLCKNGPRREADELFR 475



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 153/337 (45%), Gaps = 4/337 (1%)

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYN 211
           K D A  +F  M +     S+  F  +L  + K  K +    LF K+       D+ S+ 
Sbjct: 595 KFDDAFGLFCEMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFT 654

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
           ++ + +C   R + AL +L +M+  G  P++ T   +L G+ +  + +EA      M + 
Sbjct: 655 ILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAEL 714

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
             E +VV Y T+++G     ++  A  +F GM   G++    TYN +I  LC      +A
Sbjct: 715 GLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDA 774

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
             +  +MV +   PN   +  +I      G +  A      M      PN+ TYN LI  
Sbjct: 775 ARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLING 834

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
           FC  G +     +F+ M S  C P++ TYN LI+     K+ +D +   KL  EM  +G 
Sbjct: 835 FCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGM---KLFCEMTHQGL 891

Query: 452 MPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           +   FT+N +++G    G   +A+++      CG  P
Sbjct: 892 VGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPP 928



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 154/341 (45%), Gaps = 15/341 (4%)

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE------KAYNLFKVFRGKFKADVI 208
           + A+ +FL M +     S+  F  +L  +   ++ E      +   LF +       D+ 
Sbjct: 47  EDALDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGI-----SHDLY 101

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           S+ ++ + +C   R + AL +L +M+  G +P++ T+  +L G+    +I +A+     M
Sbjct: 102 SFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASM 161

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS-VATYNAMIQVLCKKDS 327
            K   E +VV Y T++      G++  A  + + M   G L + + TYN ++  LC    
Sbjct: 162 VKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGE 221

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
              A  +  +M  +   P+  T+  +I      G ++ A E   +M      PN  TYN 
Sbjct: 222 WRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNS 281

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           LI   C  G +    + F+ M S  C PN+ TYN LI+     ++ +D +   KL   M 
Sbjct: 282 LINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGM---KLFQRMY 338

Query: 448 DRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             G +   FT+N +++G   +G   +AK+I      CG  P
Sbjct: 339 REGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTP 379



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 146/321 (45%), Gaps = 36/321 (11%)

Query: 106  FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
            ++  I+   + RD      + + M+   +     T+  +     ++G+   A ++   M 
Sbjct: 723  YNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMV 782

Query: 166  EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTN 224
            +     ++  F  ++D   KE  + +A NL+K + R     ++++YN + NG+C+  R  
Sbjct: 783  KRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLG 842

Query: 225  KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
             A  +   MV +G  P++ TYN ++ G+ ++ ++E+  + F EM  +    D  TY T++
Sbjct: 843  DAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLI 902

Query: 285  HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM-------------------------- 318
            HG+   G++  A+ VF+ MV+ GV P + TYN +                          
Sbjct: 903  HGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMD 962

Query: 319  ---------IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
                     IQ +C+ D V+ A  +F  +  KG   ++  Y  +I GLC  G    A + 
Sbjct: 963  VDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKL 1022

Query: 370  VGRMKDDECEPNVQTYNILIR 390
              RMK+D   P+ + Y+  +R
Sbjct: 1023 CTRMKEDGFMPSERIYDETLR 1043



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 124/268 (46%), Gaps = 4/268 (1%)

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
           R   AL++  EMV     P++  +  +L       + E    F  +M+      D+ ++T
Sbjct: 45  RFEDALDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISHDLYSFT 104

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
            ++H F     +  A ++   M+  G  PS+ T+ +++   C ++ + +A  +   MV  
Sbjct: 105 ILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKS 164

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRM-KDDECEPNVQTYNILIRYFCDAGEIER 400
           GY PN   YN +I  LC  G++  ALE +  M K      ++ TYN L+   C +GE  +
Sbjct: 165 GYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQ 224

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
              +   M      P++ T+  LI + FV++ + D   A +L  +M+     P   T+N 
Sbjct: 225 AARILRDMTKRRINPDVFTFTALIDA-FVKQGNLD--EAQELYKQMLQSSIGPNTVTYNS 281

Query: 461 VLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           ++NGL + G    AK+   L +  G  P
Sbjct: 282 LINGLCMHGRLYHAKKTFDLMASKGCFP 309



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 100/241 (41%), Gaps = 36/241 (14%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F   ID   +  +      L  +M   S+GP   T+  +       G+   A K F  M
Sbjct: 243 TFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLM 302

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
              GC  ++ ++NT+++  CK ++VE    LF +++R     D  +YN + +G+C V + 
Sbjct: 303 ASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKL 362

Query: 224 NKALEVLKEMVDRGLNPNLTT-----------------------------------YNIV 248
             A ++   MV  G+ P++ T                                   YNI+
Sbjct: 363 RVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIM 422

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           + G  +A ++EEAW  F  +     + D  TYT ++ G    G  + A  +F  M   G+
Sbjct: 423 IHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELFRRMKEDGI 482

Query: 309 L 309
           +
Sbjct: 483 I 483



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 77/161 (47%), Gaps = 4/161 (2%)

Query: 100  AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
            A + ++  H    A +L   + V+   +RM    + P   T+ I+ +   + GK ++A+ 
Sbjct: 895  AFTYNTLIHGYCQAGKLNVAQKVF---NRMVDCGVPPDIVTYNILLDCLCNNGKIEKALV 951

Query: 160  IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWC 218
            +   + ++     + ++N I+  +C+  KV++A+ LF+   R   K D I+Y  + +G C
Sbjct: 952  MVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLC 1011

Query: 219  LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
                  +A ++   M + G  P+   Y+  L+ ++ +   E
Sbjct: 1012 RNGLRREADKLCTRMKEDGFMPSERIYDETLRDHYTSLSAE 1052


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 112/361 (31%), Positives = 186/361 (51%), Gaps = 4/361 (1%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           +   ++++  M  L L P   TF+ +     S  K   AVK+F  M + G    + +++T
Sbjct: 28  FHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYST 87

Query: 179 ILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           I++ LCK      A  L K    K  K +V+ Y+ I +  C  K   +A+E L EMV+RG
Sbjct: 88  IINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRG 147

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
           ++PN+ TY+ +L G+   G+  EA   F +M +R    D VT+  +V G    G I  A+
Sbjct: 148 ISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQ 207

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
            VF+ M+  GV P+V TYNA++   C +  ++ A  +F  MV KG  P+  +YN++I+G 
Sbjct: 208 CVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGH 267

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
           C +G ++ A   +  M      P+  TY+ L++ FC  G  +   +L E+M S   LP+L
Sbjct: 268 CKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDL 327

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
            TY+I++  +  +   D+   A +LL  M +    P  F +  ++ G+   G    A+E+
Sbjct: 328 MTYSIVLDGLCKQGHLDE---AFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAAREL 384

Query: 478 L 478
            
Sbjct: 385 F 385



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 108/336 (32%), Positives = 175/336 (52%), Gaps = 4/336 (1%)

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIAN 215
           A  +  +M + G + +  +F+T+L+ L  + K+  A  LF ++ +  ++ DVI+Y+ I N
Sbjct: 31  AFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIIN 90

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
           G C +  T  A+++LK+M ++G  PN+  Y+ ++    +   I EA  F  EM  R    
Sbjct: 91  GLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISP 150

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
           +VVTY++I+HGF  +G    A ++F  MV   V+P   T+N ++  L K+  +  A  VF
Sbjct: 151 NVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVF 210

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
           E M+ KG  PN  TYN ++ G C   +M+ A +    M    C P+V++YNILI+  C +
Sbjct: 211 ETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKS 270

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
           G I+    L  +M      P+  TY+ L+       +  D   A KLL EM   G +P  
Sbjct: 271 GRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQD---AQKLLEEMRSYGLLPDL 327

Query: 456 FTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
            T++ VL+GL   G+   A E+L+        P  F
Sbjct: 328 MTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIF 363



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 186/366 (50%), Gaps = 6/366 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L   M  +   P   T++ I       G    A+++   M E GC+ ++  ++TI+D LC
Sbjct: 69  LFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLC 128

Query: 185 KEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           K+K + +A       V RG    +V++Y+ I +G+C + R+N+A  + K+MV+R + P+ 
Sbjct: 129 KDKLITEAMEFLSEMVNRG-ISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDT 187

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            T+NI++ G  + G I EA   F  M ++  E +V TY  ++ G+    ++  A+ +F+ 
Sbjct: 188 VTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNI 247

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           MV  G  PSV +YN +I+  CK   ++ A  +  EM  K   P++ TY+ +++G C  G 
Sbjct: 248 MVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGR 307

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
            + A + +  M+     P++ TY+I++   C  G ++   EL + M      PN+  Y I
Sbjct: 308 PQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTI 367

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           LI  M    K   L  A +L   +  +G  P   T+  +++GLL  G    A E+ R  +
Sbjct: 368 LIQGMCNFGK---LEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMA 424

Query: 483 RCGRLP 488
             G LP
Sbjct: 425 VHGCLP 430



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 124/242 (51%), Gaps = 5/242 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+  + + Y S  + D A K+F  M   GC  S+ S+N ++   CK  ++++A  L
Sbjct: 220 PNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGL 279

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
                 K    D ++Y+ +  G+C   R   A ++L+EM   GL P+L TY+IVL G  +
Sbjct: 280 LAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCK 339

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G ++EA+     M++ K E ++  YT ++ G    G+++ AR +F  +   G+ P V T
Sbjct: 340 QGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVT 399

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA----LEFV 370
           Y  MI  L K      A  +F +M   G +PNS TYNV+I+G    G+   A     E V
Sbjct: 400 YTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEMV 459

Query: 371 GR 372
           GR
Sbjct: 460 GR 461



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 79/175 (45%), Gaps = 7/175 (4%)

Query: 308 VLPSVATYNAMIQVLCKK--DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
           + P V T   +I   C    D    A  V   M   G  PN  T++ ++ GL    ++  
Sbjct: 6   IRPDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIID 65

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           A++    M     EP+V TY+ +I   C  G     ++L +KM    C PN+  Y+ +I 
Sbjct: 66  AVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIID 125

Query: 426 SMFVRKKSDDLLV-AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           S+      D L+  A + L EMV+RG  P   T++ +L+G   +G    A  + +
Sbjct: 126 SLC----KDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFK 176



 Score = 42.4 bits (98), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 7/112 (6%)

Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL---PNLDTYNILISSMFVRKKSDDL 436
           P+V T  ILI  FC +         F  +G+   L   PN  T++ L++ +  + K  D 
Sbjct: 8   PDVYTLTILINCFCHSNHDHFHFA-FSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIID- 65

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             A KL  EMV  G+ P   T++ ++NGL  +G+  +A ++L+     G  P
Sbjct: 66  --AVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKP 115


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 190/351 (54%), Gaps = 7/351 (1%)

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSM-HEHGCRQSLNSFNTILDLLCKEKKVEK 191
           S+ P   T++ +   +   G+ DRA +I   M    G    + ++ +++D LC++ K+++
Sbjct: 72  SVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDR 131

Query: 192 AYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKE-MVDRGLNPNLTTYNIVL 249
           A  + +  + K  + D  +++ +  GWC  ++ ++AL++ KE +      P++ TY  ++
Sbjct: 132 ACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALI 191

Query: 250 KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
            G+ ++G +E+A +    M+ RKC  +VVTY++++HG    G++ +A ++F  M + G +
Sbjct: 192 DGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCV 251

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           P+V TY  +I  LC    V+ A L+ +EM      P++ +YN ++ G C  G +E A + 
Sbjct: 252 PNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQL 311

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL-PNLDTYNILISSMF 428
              M    C P+  TY  L+R FC+A  +E    L E M +   + P++ TY+I+++  +
Sbjct: 312 FKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAG-Y 370

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
            R K    + A + + EM+ R   P   T++ +++GL   G    A E+L+
Sbjct: 371 SRAKR--FVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLK 419



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 106/324 (32%), Positives = 179/324 (55%), Gaps = 8/324 (2%)

Query: 169 CRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
           C+ ++ ++  I+D  CK  ++++A   F+  R     +  +YNV+ NG C  + T+KA E
Sbjct: 3   CQPTVVTWTIIIDGFCKANQLKQALACFEKMREFVAPNERTYNVVVNGLCKARLTSKAYE 62

Query: 229 VLKEMVD-RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK-CEIDVVTYTTIVHG 286
           VLKEM D + + P+L TY+ V+ G+ + G+++ A     EM  R     DVVTYT++V G
Sbjct: 63  VLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDG 122

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE-MVGKGYMP 345
               G++ RA  +   M   GV P   T++A+I   C    V+ A+ +++E +    + P
Sbjct: 123 LCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKP 182

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           +  TY  +I G C +G +E+A++ +G M+  +C PNV TY+ L+   C AG++++ L+LF
Sbjct: 183 DVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLF 242

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLI-EMVDRGFMPRKFTFNRVLNG 464
            +M S  C+PN+ TY  LI  +    K D    A +LL+ EM      P   ++N +L+G
Sbjct: 243 RRMTSKGCVPNVVTYTTLIHGLCAAHKVD----AARLLMDEMTATCCPPDTVSYNALLDG 298

Query: 465 LLLIGNQGLAKEILRLQSRCGRLP 488
              +G    AK++ +  +    LP
Sbjct: 299 YCRLGRIEEAKQLFKEMATKSCLP 322



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 171/359 (47%), Gaps = 6/359 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS-MHEHGCRQSLNSFNTILDLL 183
           +V  MK   + P + TF+ +   + +A K D A+K++   +     +  + ++  ++D  
Sbjct: 135 MVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGF 194

Query: 184 CKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CK   +EKA  +  V  G K   +V++Y+ + +G C     ++AL++ + M  +G  PN+
Sbjct: 195 CKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNV 254

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TY  ++ G   A +++ A     EM    C  D V+Y  ++ G+  +G I+ A+ +F  
Sbjct: 255 VTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKE 314

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM-VGKGYMPNSTTYNVVIRGLCHTG 361
           M     LP   TY  +++  C    +E A  + E M    G  P+  TY++V+ G     
Sbjct: 315 MATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAK 374

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
               A EF+  M      PN  TY+ LI   C AG ++  +E+ + M +    P++ T+N
Sbjct: 375 RFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFN 434

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
            +I ++    +  D+  A KLL+ M   G  P   T+  +L G    G   +A E+  +
Sbjct: 435 SVIGALC---RLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEV 490



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 176/397 (44%), Gaps = 25/397 (6%)

Query: 64  SLHWTPQ------LVDQIIKRLWNHALKALHFFNILSYHPTYAH--SPSSFDHAIDLAAR 115
           S  W P       L+D   K    +  KA+    ++       +  + SS  H +  A  
Sbjct: 177 SSSWKPDVVTYTALIDGFCKS--GNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAG- 233

Query: 116 LRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS 175
             D      L  RM S    P   T+  +     +A K D A  +   M    C     S
Sbjct: 234 --DLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVS 291

Query: 176 FNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEM- 233
           +N +LD  C+  ++E+A  LFK    K    D I+Y  +  G+C   R  +A  +L+ M 
Sbjct: 292 YNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMK 351

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
              G++P++ TY+IV+ GY RA +  EA  F  EM  R    + VTY++++ G    G +
Sbjct: 352 TAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRV 411

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
             A  V   MVN  V PSV T+N++I  LC+   ++ A  +   M   G  P   TY  +
Sbjct: 412 DHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTL 471

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNV-------QTYNILIRYFCDAGEIERGLELFE 406
           + G   TG ME A E    M+    + +        Q ++ LIR  C A EI++ + + E
Sbjct: 472 LEGFSRTGRMEIAYELFEVMRKKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMAVVE 531

Query: 407 KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
           ++ S  C P  +    ++  +    ++++   AGKL+
Sbjct: 532 ELRSRECEPAEEDCLAIVDGLLRAGRTEE---AGKLI 565



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 121/254 (47%), Gaps = 40/254 (15%)

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM--------------VNG----------- 306
           +C+  VVT+T I+ GF    ++K+A   F+ M              VNG           
Sbjct: 2   ECQPTVVTWTIIIDGFCKANQLKQALACFEKMREFVAPNERTYNVVVNGLCKARLTSKAY 61

Query: 307 ----------GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK-GYMPNSTTYNVVIR 355
                      V P + TY+ +I   CK+  ++ A  +  EMV + G  P+  TY  V+ 
Sbjct: 62  EVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVD 121

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF-EKMGSGVCL 414
           GLC  G+M+RA E V  MK    EP+  T++ LI  +C+A +++  L+L+ E + S    
Sbjct: 122 GLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWK 181

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           P++ TY  LI       KS +L  A K+L  M  R  +P   T++ +L+GL   G+   A
Sbjct: 182 PDVVTYTALIDGFC---KSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQA 238

Query: 475 KEILRLQSRCGRLP 488
            ++ R  +  G +P
Sbjct: 239 LDLFRRMTSKGCVP 252



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 8/143 (5%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P+  TF  +       G  D A K+ ++M  HG    + ++ T+L+   +  ++E AY L
Sbjct: 428 PSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYEL 487

Query: 196 FKVFRGKFKADVISYNVIAN--------GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           F+V R K K    + N++          G C  +  +KA+ V++E+  R   P       
Sbjct: 488 FEVMRKKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLA 547

Query: 248 VLKGYFRAGQIEEAWRFFLEMKK 270
           ++ G  RAG+ EEA +    + K
Sbjct: 548 IVDGLLRAGRTEEAGKLINSISK 570


>gi|356560497|ref|XP_003548528.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Glycine max]
          Length = 490

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 122/427 (28%), Positives = 215/427 (50%), Gaps = 11/427 (2%)

Query: 44  ASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHA---LKALHFFNILSYHPTYA 100
           A L   S++  TL    +  +  + P   D + + LW +      AL  F   S  P++ 
Sbjct: 47  AKLGKGSSEEETLHTLFNDQACDFIPLSRDLVHRLLWRYKDDWKSALGVFRWASSRPSFR 106

Query: 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           HS  S+D  +D+  R++    +  L+  M+   L     T A    R+V AG+   AV+I
Sbjct: 107 HSSESYDMMVDILGRMKVMEKLRDLLEEMREGGL-VNMNTVAKAMRRFVGAGQWVDAVRI 165

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV 220
           F  +   G  ++  S N +LD LCKEK V++A  +F   +     +  ++N+  +GWC +
Sbjct: 166 FDDLQALGLEKNTESMNLLLDTLCKEKFVQQAREIFLELKQHIAPNAHTFNIFIHGWCKI 225

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
            R ++A   ++EM   G +P + +Y+ +++ Y + G     +    EM+ + C  +V+TY
Sbjct: 226 CRVDEAHWTIQEMKGYGFHPCVISYSTLIQCYCQEGNFSRVYELLDEMQAQGCSANVITY 285

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE-EMV 339
           T+I+   G   + + A  V + M + G  P    +N++I  L +   +++A  VF+ EM 
Sbjct: 286 TSIMCALGKAKKFEEALKVPERMRSSGCRPDTLFFNSLIHTLGRAGRLDDAADVFKVEMP 345

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD-ECEPNVQTYNILIRYFCDAGEI 398
             G  PN++TYN +I   C+  + +RALE +  M++   C+P+ QTY+ LI+    +G+I
Sbjct: 346 KAGVSPNTSTYNSMISMFCYHAQEKRALEILKEMENSGGCKPDAQTYHPLIKSCFRSGKI 405

Query: 399 ERGL-ELFEKMGSGVCLP-NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
           +  L E+   M +   L  +L TY +LI  +    + D    A  L  EM+D+  +PR  
Sbjct: 406 DGVLSEILNDMINKQHLSLDLSTYTLLIHGLC---REDRCNWAFSLFEEMIDQDIIPRYR 462

Query: 457 TFNRVLN 463
           T   +L+
Sbjct: 463 TCRLLLD 469



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 130/286 (45%), Gaps = 4/286 (1%)

Query: 200 RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
           R  F+    SY+++ +    +K   K  ++L+EM + GL  N+ T    ++ +  AGQ  
Sbjct: 102 RPSFRHSSESYDMMVDILGRMKVMEKLRDLLEEMREGGL-VNMNTVAKAMRRFVGAGQWV 160

Query: 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319
           +A R F +++    E +  +   ++        +++AR +F  +    + P+  T+N  I
Sbjct: 161 DAVRIFDDLQALGLEKNTESMNLLLDTLCKEKFVQQAREIFLEL-KQHIAPNAHTFNIFI 219

Query: 320 QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
              CK   V+ A    +EM G G+ P   +Y+ +I+  C  G   R  E +  M+   C 
Sbjct: 220 HGWCKICRVDEAHWTIQEMKGYGFHPCVISYSTLIQCYCQEGNFSRVYELLDEMQAQGCS 279

Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA 439
            NV TY  ++     A + E  L++ E+M S  C P+   +N LI ++    + DD   A
Sbjct: 280 ANVITYTSIMCALGKAKKFEEALKVPERMRSSGCRPDTLFFNSLIHTLGRAGRLDD--AA 337

Query: 440 GKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
               +EM   G  P   T+N +++       +  A EIL+     G
Sbjct: 338 DVFKVEMPKAGVSPNTSTYNSMISMFCYHAQEKRALEILKEMENSG 383



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 116/242 (47%), Gaps = 9/242 (3%)

Query: 95  YHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKA 154
           +HP       S+   I    +  ++  V+ L+  M++        T+  I      A K 
Sbjct: 243 FHPCVI----SYSTLIQCYCQEGNFSRVYELLDEMQAQGCSANVITYTSIMCALGKAKKF 298

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNV 212
           + A+K+   M   GCR     FN+++  L +  +++ A ++FKV   +     +  +YN 
Sbjct: 299 EEALKVPERMRSSGCRPDTLFFNSLIHTLGRAGRLDDAADVFKVEMPKAGVSPNTSTYNS 358

Query: 213 IANGWCLVKRTNKALEVLKEMVDRG-LNPNLTTYNIVLKGYFRAGQIEEAWRFFLE--MK 269
           + + +C   +  +ALE+LKEM + G   P+  TY+ ++K  FR+G+I+      L   + 
Sbjct: 359 MISMFCYHAQEKRALEILKEMENSGGCKPDAQTYHPLIKSCFRSGKIDGVLSEILNDMIN 418

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
           K+   +D+ TYT ++HG         A ++F+ M++  ++P   T   ++  + +K+  +
Sbjct: 419 KQHLSLDLSTYTLLIHGLCREDRCNWAFSLFEEMIDQDIIPRYRTCRLLLDEVKQKNMYQ 478

Query: 330 NA 331
            A
Sbjct: 479 AA 480



 Score = 43.1 bits (100), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 34/171 (19%), Positives = 72/171 (42%), Gaps = 6/171 (3%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           +S  H +  A RL D   V+ +   M    + P   T+  +   +    +  RA++I   
Sbjct: 321 NSLIHTLGRAGRLDDAADVFKV--EMPKAGVSPNTSTYNSMISMFCYHAQEKRALEILKE 378

Query: 164 MHEHG-CRQSLNSFNTILDLLCKEKKVEKAYNLF---KVFRGKFKADVISYNVIANGWCL 219
           M   G C+    +++ ++    +  K++   +      + +     D+ +Y ++ +G C 
Sbjct: 379 MENSGGCKPDAQTYHPLIKSCFRSGKIDGVLSEILNDMINKQHLSLDLSTYTLLIHGLCR 438

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
             R N A  + +EM+D+ + P   T  ++L    +    + A +    MKK
Sbjct: 439 EDRCNWAFSLFEEMIDQDIIPRYRTCRLLLDEVKQKNMYQAAEKIEDLMKK 489


>gi|449431996|ref|XP_004133786.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Cucumis sativus]
 gi|449477985|ref|XP_004155184.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Cucumis sativus]
          Length = 485

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 108/389 (27%), Positives = 186/389 (47%), Gaps = 9/389 (2%)

Query: 68  TPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVH 127
           + +LV  ++ R+ N    A  FF      P YAHS   +   I +  ++R + T W L+ 
Sbjct: 42  SGELVVAVLSRIRNDWEAAFTFFVWAGKQPGYAHSVREYHSMISILGKMRKFDTAWALID 101

Query: 128 RMKSLSLGP---TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
            M+  + G    T +T  I+  RY +     +A+  F +    G    L  F ++L  LC
Sbjct: 102 EMRGGTPGSSLVTPQTLLIMIRRYCAVHDVAKAINTFYAHKRFGFNIGLEEFQSLLSALC 161

Query: 185 KEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
           + K V+ A  L    +  F  +  S+N+I NGWC++        V KEM  RG++ +  +
Sbjct: 162 RYKNVKDAEYLLFCNKDVFPFNTKSFNIILNGWCVIGSLRDTERVWKEMTRRGISHDAVS 221

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           Y   +  Y +   + +  R F +MK+ K + D   Y  ++H       +K A ++   M 
Sbjct: 222 YASCISCYSKVRNLHKVLRLFEDMKRMKIDPDRKVYNAVIHSLAKGRCLKEAADLIKTME 281

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
             G++ +V TYN++I+ LCK    + A  VFEE++ +G  P   TY+  +R L    E+ 
Sbjct: 282 EKGIIANVVTYNSVIKPLCKARRFDEARAVFEELLQRGLCPTIQTYHAFLRFLRTEEEI- 340

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
              E + +M+   C P   TY +LIR FC   +++    ++ +M      P+  +Y +LI
Sbjct: 341 --FELLKKMRTMGCNPTTDTYIMLIRKFCRWRQLDNVSRIWHEMSENGISPDRSSYIVLI 398

Query: 425 SSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
             +F+  K +D   A K  +EM ++  +P
Sbjct: 399 HGLFLNGKLED---AHKYYLEMKEKDLLP 424


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 109/355 (30%), Positives = 179/355 (50%), Gaps = 6/355 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   +++ +      +G    A+++   M E GC+ +L ++ TI+D LCK+  V  A +L
Sbjct: 195 PDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDL 254

Query: 196 FK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
               V RG    DV++Y+ I +G+C +   N+A  +  EMV R + PN  T+ I++ G  
Sbjct: 255 LSEMVDRG-IPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLC 313

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
           + G + EA   F  M K+  E +  TY  ++ G+ +  ++  A+ V D MV+ G  P V 
Sbjct: 314 KEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVH 373

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           +YN +I   CK+  ++ A  +  EM  K   P++ TY+ +++GLC  G  + AL     M
Sbjct: 374 SYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEM 433

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
                 P++ TY+ L+   C  G ++  L+L + M      P++  YNILI  MF+  K 
Sbjct: 434 CSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGK- 492

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             L VA +L  ++   G  P   T+  ++ GLL  G    A E+ R     G LP
Sbjct: 493 --LEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLP 545



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/392 (29%), Positives = 194/392 (49%), Gaps = 6/392 (1%)

Query: 89  FFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERY 148
           F+ +L  +P    S   F   +   A+ + Y TV +L ++M    +     +  I+    
Sbjct: 80  FYRMLRMNPR--PSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNILINCL 137

Query: 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADV 207
                   A+ +   M + G +    +FNT+++  C E ++++A  LF ++ R   + DV
Sbjct: 138 CRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDV 197

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           ISY+ + NG C    T+ AL++L++M ++G  PNL  Y  ++    +   + +A     E
Sbjct: 198 ISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSE 257

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M  R    DVVTY+TI+HGF  +G +  A  +F+ MV   V+P+  T+  ++  LCK+  
Sbjct: 258 MVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGM 317

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
           V  A  VFE M  KG  PN+ TYN ++ G C   +M+ A + +  M D  C P V +YNI
Sbjct: 318 VSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNI 377

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           LI  +C    ++    L  +M      P+  TY+ L+  +    +  + L    L  EM 
Sbjct: 378 LINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEAL---NLFKEMC 434

Query: 448 DRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
             G +P   T++ +L+GL   G+   A ++L+
Sbjct: 435 SSGLLPDLMTYSTLLDGLCKHGHLDEALKLLK 466



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 177/340 (52%), Gaps = 4/340 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M    + P   T++ I   + S G  + A  +F  M       +  +F  ++D LC
Sbjct: 254 LLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLC 313

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           KE  V +A  +F+    K  + +  +YN + +G+CL  + ++A +VL  MVD+G  P + 
Sbjct: 314 KEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVH 373

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           +YNI++ GY +  +++EA    +EM +++   D VTY+T++ G   VG  + A N+F  M
Sbjct: 374 SYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEM 433

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            + G+LP + TY+ ++  LCK   ++ A+ + + M      P+   YN++I G+   G++
Sbjct: 434 CSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKL 493

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           E A E   ++  D  +P ++TY I+I+     G  +   ELF KM     LPN  +YN++
Sbjct: 494 EVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVI 553

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           I      + S     A +L+ EMV + F     TF  +L+
Sbjct: 554 IQGFLQNQDSS---TAIRLIDEMVGKRFSADSSTFQMLLD 590



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 137/296 (46%), Gaps = 5/296 (1%)

Query: 194 NLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
           + +++ R   +  V+ +          K+ +  + +  +M   G+  N+ + NI++    
Sbjct: 79  SFYRMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNILINCLC 138

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
           R   +  A     +M K   + D +T+ T+++G  + GEIK A  +F+ MV  G  P V 
Sbjct: 139 RLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVI 198

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           +Y+ +I  LCK  +   A+ +  +M  KG  PN   Y  +I  LC    +  A++ +  M
Sbjct: 199 SYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEM 258

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
            D    P+V TY+ ++  FC  G +     LF +M     +PN  T+ IL+  +      
Sbjct: 259 VDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLC----K 314

Query: 434 DDLLVAGKLLIE-MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           + ++   + + E M  +G  P  +T+N +++G  L      A+++L +    G  P
Sbjct: 315 EGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAP 370



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 111/250 (44%), Gaps = 19/250 (7%)

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR----------------ARNVFD 301
           + E  RF   + K+K    VV+    +  FGV   +                  A +V  
Sbjct: 92  VVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNILINCLCRLNHVVFAISVLG 151

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M   G+ P   T+N +I   C +  ++ A+ +F EMV +G+ P+  +Y+ VI GLC +G
Sbjct: 152 KMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCKSG 211

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
               AL+ + +M++  C+PN+  Y  +I   C    +   ++L  +M      P++ TY+
Sbjct: 212 NTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYS 271

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481
            ++         ++   A  L  EMV R  MP   TF  +++GL   G    A+ +    
Sbjct: 272 TILHGFCSLGHLNE---ATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAM 328

Query: 482 SRCGRLPRQF 491
           ++ G  P  +
Sbjct: 329 TKKGAEPNAY 338



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 3/162 (1%)

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
           S+++A+  F  M+     P+   +   +  +    +    +    +M       NV + N
Sbjct: 72  SIDDALASFYRMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLN 131

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
           ILI   C    +   + +  KM      P+  T+N LI+    R    ++  A  L  EM
Sbjct: 132 ILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLING---RCIEGEIKEAVGLFNEM 188

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           V RG  P   +++ V+NGL   GN  +A ++LR     G  P
Sbjct: 189 VRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKP 230


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 106/357 (29%), Positives = 182/357 (50%), Gaps = 5/357 (1%)

Query: 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
           + P   T+ I+     + G+ + AV +   M   GC  +  ++NT++   C+  +++ A 
Sbjct: 148 VAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAE 207

Query: 194 NLFKVFR--GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
            +  + R  G  K +++++N + NG C   R   A +V  EMV  GL P++ +YN +L G
Sbjct: 208 RVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSG 267

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
           Y + G + E+   F EM +R    DVVT+T+++H     G +++A  +   M   G+  +
Sbjct: 268 YCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMN 327

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
             T+ A+I   CKK  +++A+L  EEM   G  P+   YN +I G C  G M+ A E + 
Sbjct: 328 EVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIR 387

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
            M+    +P+V TY+ +I  +C  G ++   +L +KM     LP+  TY+ LI  +   K
Sbjct: 388 EMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEK 447

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           + +D   A +L   M+  G  P +FT+  +++G    GN   A  +     R G LP
Sbjct: 448 RLND---ACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLP 501



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 106/388 (27%), Positives = 187/388 (48%), Gaps = 41/388 (10%)

Query: 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG-CR 170
           L AR R    V  +V  M+     P   T+  +   +  AG+ D A ++   M E G  +
Sbjct: 162 LCARGRLEEAV-GVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAK 220

Query: 171 QSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEV 229
            +L +FN++++ LCK  ++E A  +F ++ R     DV+SYN + +G+C V   +++L V
Sbjct: 221 PNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAV 280

Query: 230 LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR------------------ 271
             EM  RGL P++ T+  ++    +AG +E+A     +M++R                  
Sbjct: 281 FSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCK 340

Query: 272 ---------------KCEI--DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
                          KC I   VV Y  +++G+  +G +  AR +   M    V P V T
Sbjct: 341 KGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVT 400

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y+ +I   CK  ++++A  + ++M+ KG +P++ TY+ +IRGLC    +  A E    M 
Sbjct: 401 YSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENML 460

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
               +P+  TY  LI   C  G +E+ L L ++M     LP++ TY++LI+ +    KS 
Sbjct: 461 QLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGL---SKSA 517

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
               A +LL ++     +P    ++ ++
Sbjct: 518 RTKEAHRLLFKLYHEDPVPDNIKYDALM 545



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 159/322 (49%), Gaps = 4/322 (1%)

Query: 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKAL 227
           G   S+ ++N +L  L           L  + R     +V +YN++    C   R  +A+
Sbjct: 113 GYAPSVPAYNAVLLALSDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAV 172

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR-KCEIDVVTYTTIVHG 286
            V+ +M   G  PN  TYN ++  + RAG+++ A R    M++    + ++VT+ ++V+G
Sbjct: 173 GVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNG 232

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
               G ++ AR VFD MV  G+ P V +YN ++   CK   +  ++ VF EM  +G +P+
Sbjct: 233 LCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPD 292

Query: 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
             T+  +I   C  G +E+A+  V +M++     N  T+  LI  FC  G ++  L   E
Sbjct: 293 VVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVE 352

Query: 407 KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
           +M      P++  YN LI+      + D   +A +L+ EM  +   P   T++ +++G  
Sbjct: 353 EMRKCGIQPSVVCYNALINGYCKLGRMD---LARELIREMEAKRVKPDVVTYSTIISGYC 409

Query: 467 LIGNQGLAKEILRLQSRCGRLP 488
            +GN   A ++ +   + G LP
Sbjct: 410 KVGNLDSAFQLNQKMLKKGVLP 431



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 153/351 (43%), Gaps = 51/351 (14%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M    L P   TF  +      AG  ++AV +   M E G R +  +F  ++D  CK+  
Sbjct: 284 MTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGF 343

Query: 189 VEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           ++ A    +  R    +  V+ YN + NG+C + R + A E+++EM  + + P++ TY+ 
Sbjct: 344 LDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYST 403

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ GY + G ++ A++   +M K+    D +TY++++ G      +  A  +F+ M+  G
Sbjct: 404 IISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLG 463

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL---------- 357
           V P   TY  +I   CK+ +VE A+ + +EM+ KG +P+  TY+V+I GL          
Sbjct: 464 VQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAH 523

Query: 358 ----------------------------------------CHTGEMERALEFVGRMKDDE 377
                                                   C  G M+ A +    M D  
Sbjct: 524 RLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRN 583

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
            + +   Y+ILI   C  G + + L   ++M      PN  +   L+  +F
Sbjct: 584 WKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLF 634



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 132/289 (45%), Gaps = 16/289 (5%)

Query: 126 VHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185
           V  M+   + P+   +  +   Y   G+ D A ++   M     +  + +++TI+   CK
Sbjct: 351 VEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCK 410

Query: 186 EKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
              ++ A+ L  K+ +     D I+Y+ +  G C  KR N A E+ + M+  G+ P+  T
Sbjct: 411 VGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFT 470

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           Y  ++ G+ + G +E+A     EM ++    DVVTY+ +++G       K A  +   + 
Sbjct: 471 YTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLY 530

Query: 305 NGGVLPSVATYN---------------AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
           +   +P    Y+               A+++  C K  ++ A  V++ M+ + +  + + 
Sbjct: 531 HEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSV 590

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
           Y+++I G C  G + +AL F  +M      PN  +   L+R   + G +
Sbjct: 591 YSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMV 639



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 121/253 (47%), Gaps = 16/253 (6%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M++  + P   T++ I   Y   G  D A ++   M + G      ++++++  LC
Sbjct: 385 LIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLC 444

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           +EK++  A  LF+ + +   + D  +Y  + +G C      KAL +  EM+ +G+ P++ 
Sbjct: 445 EEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVV 504

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY---------------TTIVHGFG 288
           TY++++ G  ++ + +EA R   ++       D + Y                 ++ GF 
Sbjct: 505 TYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFC 564

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
           + G +K A  V+  M++       + Y+ +I   C+  +V  A+   ++M+  G+ PNST
Sbjct: 565 MKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNST 624

Query: 349 TYNVVIRGLCHTG 361
           +   ++RGL   G
Sbjct: 625 STISLVRGLFEEG 637



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 109/231 (47%), Gaps = 19/231 (8%)

Query: 121 TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180
           + + L  +M    + P   T++ +        + + A ++F +M + G +    ++ T++
Sbjct: 416 SAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLI 475

Query: 181 DLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
           D  CKE  VEKA +L  ++ R     DV++Y+V+ NG     RT +A  +L ++      
Sbjct: 476 DGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPV 535

Query: 240 PNLTTYNIV---------------LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           P+   Y+ +               LKG+   G ++EA + +  M  R  ++D   Y+ ++
Sbjct: 536 PDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILI 595

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV---ENAI 332
           HG    G +++A +    M+  G  P+  +  ++++ L ++  V   +NAI
Sbjct: 596 HGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAI 646



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/213 (19%), Positives = 91/213 (42%), Gaps = 16/213 (7%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L   M  L + P + T+  + + +   G  ++A+ +   M   G    + +++ +++ L 
Sbjct: 455 LFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLS 514

Query: 185 KEKKVEKAYNL-FKVFRGKFKADVISYNVIA---------------NGWCLVKRTNKALE 228
           K  + ++A+ L FK++      D I Y+ +                 G+C+     +A +
Sbjct: 515 KSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADK 574

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           V + M+DR    + + Y+I++ G+ R G + +A  F  +M +     +  +  ++V G  
Sbjct: 575 VYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLF 634

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
             G +  A N    ++    L       A+I +
Sbjct: 635 EEGMVVEADNAIQDLLTCCPLADAEASKALIDL 667


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/429 (27%), Positives = 199/429 (46%), Gaps = 45/429 (10%)

Query: 90  FNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149
             +L    +   +P +F H   + A          + H ++S+   P   T+  +   + 
Sbjct: 10  LELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDH-LRSMGCDPNVVTYTALIAAFA 68

Query: 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVI 208
            A K + A+K+   M E GC  +L ++N ++D LCK   V  A ++ K +  G F  +V+
Sbjct: 69  RAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVM 128

Query: 209 SYNVIANGWCLVKRTN-------------------------------------KALEVLK 231
           ++N + +G+C  KR N                                     +A EVL+
Sbjct: 129 TFNSLVDGFC--KRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLE 186

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
           EM   G+ P+  TY+ ++ G  +A +IEEA +    M    C  DVV Y++I+H F   G
Sbjct: 187 EMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSG 246

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG-YMPNSTTY 350
           ++  A+     M      P V TYN +I  LCK   +  A ++ ++M   G  +P+  TY
Sbjct: 247 KLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTY 306

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           + VI GLC +  +  A + + RM    C P+V TY  +I   C  G +E    L + M  
Sbjct: 307 STVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKR 366

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
             C PN+ TY  LIS +   +K D+   A +++ EM + G  P   T+N ++NGL + G 
Sbjct: 367 AGCAPNVVTYTTLISGLCKARKVDE---AERVMEEMRNAGCPPNLVTYNTMVNGLCVSGR 423

Query: 471 QGLAKEILR 479
              A+++++
Sbjct: 424 IKEAQQLVQ 432



 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 183/366 (50%), Gaps = 7/366 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  +D   +L        +V +M      P   TF  + + +   G  D A K+   M
Sbjct: 94  TYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIM 153

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
              G R ++ +++ ++D LCK +K  +A  + +  +      D  +Y+ + +G C   + 
Sbjct: 154 VAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKI 213

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A ++L+ M   G  P++  Y+ ++  + ++G++ EA +   EM+K++   DVVTY T+
Sbjct: 214 EEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTV 273

Query: 284 VHGFGVVGEIKRARNVFDGMV-NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           + G   +G+I  A+ + D M  +G VLP V TY+ +I  LCK D +  A  + + M   G
Sbjct: 274 IDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAG 333

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
             P+  TY  +I GLC  G +E A   +  MK   C PNV TY  LI   C A +++   
Sbjct: 334 CNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAE 393

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD--RGFMPRKFTFNR 460
            + E+M +  C PNL TYN +++ + V  +  +   A +L+  M D      P   T+  
Sbjct: 394 RVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKE---AQQLVQRMKDGRAECSPDAATYRT 450

Query: 461 VLNGLL 466
           ++N L+
Sbjct: 451 IVNALM 456



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 107/373 (28%), Positives = 184/373 (49%), Gaps = 8/373 (2%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177
           D      L+  MKS    P   T   I     +AG  D A+    SM   GC  ++ ++ 
Sbjct: 5   DLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSM---GCDPNVVTYT 61

Query: 178 TILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
            ++    + KK+E+A  L +  R +    ++++YNV+ +  C +     A +V+K+M++ 
Sbjct: 62  ALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEG 121

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           G  PN+ T+N ++ G+ + G +++A +    M  +    +VVTY+ ++ G     +   A
Sbjct: 122 GFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEA 181

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
           + V + M   GV P   TY+A+I  LCK D +E A  +   M G G  P+   Y+ +I  
Sbjct: 182 KEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHA 241

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG-SGVCLP 415
            C +G++  A + +  M+     P+V TYN +I   C  G+I     + ++M  SG  LP
Sbjct: 242 FCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLP 301

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
           ++ TY+ +I+ +    KSD L+ A KLL  M   G  P   T+  +++GL   G    A+
Sbjct: 302 DVVTYSTVINGLC---KSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAE 358

Query: 476 EILRLQSRCGRLP 488
            +L+   R G  P
Sbjct: 359 YLLQGMKRAGCAP 371



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 169/351 (48%), Gaps = 9/351 (2%)

Query: 63  PSLHWTPQLVDQIIKRL-WNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRT 121
           P++     LVD   KR   + A K L         P       ++   ID   + + +  
Sbjct: 125 PNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVV----TYSALIDGLCKSQKFLE 180

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
              ++  MK+  + P   T++ +      A K + A ++   M   GC   +  +++I+ 
Sbjct: 181 AKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIH 240

Query: 182 LLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRG-LN 239
             CK  K+ +A    +  R + K+ DV++YN + +G C + +  +A  +L +M + G + 
Sbjct: 241 AFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVL 300

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           P++ TY+ V+ G  ++  + EA +    M K  C  DVVTYTTI+ G    G ++ A  +
Sbjct: 301 PDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYL 360

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
             GM   G  P+V TY  +I  LCK   V+ A  V EEM   G  PN  TYN ++ GLC 
Sbjct: 361 LQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCV 420

Query: 360 TGEMERALEFVGRMKDD--ECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           +G ++ A + V RMKD   EC P+  TY  ++     +  ++   +L E+M
Sbjct: 421 SGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 471



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 72/163 (44%), Gaps = 35/163 (21%)

Query: 358 CHTGEMERALEFVGRMKDD--------------------------------ECEPNVQTY 385
           C+ G++  ALE +  MK                                   C+PNV TY
Sbjct: 1   CNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCDPNVVTY 60

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
             LI  F  A ++E  ++L E+M    C PNL TYN+L+ ++    K   +  A  ++ +
Sbjct: 61  TALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALC---KLSMVGAAQDVVKK 117

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           M++ GF P   TFN +++G    GN   A+++L +    G  P
Sbjct: 118 MIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRP 160


>gi|356531098|ref|XP_003534115.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Glycine max]
          Length = 466

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 126/421 (29%), Positives = 210/421 (49%), Gaps = 32/421 (7%)

Query: 68  TPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAA----RLRDYRTVW 123
           TP LV   + RL      AL FF    +   Y+H P +++  +D+ +    +++ +R V 
Sbjct: 23  TP-LVTGGLHRLRYDEKIALRFFTWAGHQEDYSHEPCAYNDMMDILSSTRYKVKQFRIVC 81

Query: 124 TLVHRMK--SLSLGPTQKTFAII---AERYVS-----AGKADRAVKIFLSMHEHGCRQSL 173
            ++  MK  + ++ P +    I+    E+Y++     A K    VK  L          +
Sbjct: 82  DVLEYMKRNNRTMVPAEVLLVILRKYTEKYLTHMQKFAKKKRIRVKTQLE---------I 132

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           N+FN +LD LCK   VE A +L+K  R   K +  +YN++  GWC V+   + +++L+EM
Sbjct: 133 NAFNLLLDALCKCCLVEDAESLYKKMRKTVKPNAETYNILVFGWCRVRNPTRGMKLLEEM 192

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID---VVTYTTIVHGFGVV 290
           ++ G  P+  TYN  +  Y + G I EA   F  M+ +   I      TY  I+      
Sbjct: 193 IELGHRPDNFTYNTAIDTYCKTGMITEAVDLFEFMRTKGSTISSPTAKTYAIIIVALAQH 252

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
             ++    +   M++ G LP V TY  +I+ +C    ++ A    EEM  K Y P+  TY
Sbjct: 253 DRMEDCFKLIGHMISSGCLPDVTTYKEIIEGMCMCGKIDEAYKFLEEMGNKSYRPDIVTY 312

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           N  ++ LC   + E AL+  GRM +  C P+VQTYN+LI  F +  + +   E ++++ +
Sbjct: 313 NCFLKVLCDNKKSEDALKLYGRMIELNCIPSVQTYNMLISMFFEMDDPDGAFETWQEIDN 372

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF-MPRKFTFNRVLNGLLLIG 469
             C P+ DTY ++I  +F   K +D   A  LL E+++ G  +P K  F+  L  L +IG
Sbjct: 373 RGCRPDTDTYCVMIEGLFNCNKMED---ACFLLEEVINEGVKLPYK-KFDSFLMQLSVIG 428

Query: 470 N 470
           +
Sbjct: 429 D 429


>gi|297807667|ref|XP_002871717.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317554|gb|EFH47976.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 533

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/427 (27%), Positives = 207/427 (48%), Gaps = 10/427 (2%)

Query: 69  PQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHR 128
           P+ +  +I +  N  L    F      HP + H+  ++   +   +R R +  V +L+  
Sbjct: 47  PKRLVSMITQQQNIDLALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMAD 106

Query: 129 MKSLSLGPT---QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185
           +++ S  P    +  F  +   Y  AG+ + +++IFL + + G ++S+ S NT+L++L +
Sbjct: 107 LRN-SYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQ 165

Query: 186 EKKVEKAYNLFKVFRGKF--KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            ++ +  + +FK  +  F    ++ + N++    C       A +VL E+   GL PNL 
Sbjct: 166 NQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPAMGLVPNLV 225

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY  +L GY   G +E A R   EM  R    D +TYT ++ G+  +G    A  V D M
Sbjct: 226 TYTTILGGYVARGDMESAKRVLEEMLDRGWYPDAITYTVLMDGYCKLGRFSEAATVMDDM 285

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
               + P+  TY  MI+ LCK+     A  +F+EM+ + +MP+S+    VI  LC   ++
Sbjct: 286 EKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLDRSFMPDSSLCCKVIDALCEDHKV 345

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A     +M  + C P+    + LI + C  G +    +LF++   G  +P+L TYN L
Sbjct: 346 DEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVSEARKLFDEFDKG-SIPSLLTYNTL 404

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I+ M    +  +L  AG+L  +M +R   P  FT+N ++ GL   GN      +L     
Sbjct: 405 IAGMC---EKGELTEAGRLWDDMFERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLE 461

Query: 484 CGRLPRQ 490
            G  P +
Sbjct: 462 SGCFPNK 468



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 139/288 (48%), Gaps = 2/288 (0%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177
           D  + + ++  + ++ L P   T+  I   YV+ G  + A ++   M + G      ++ 
Sbjct: 204 DIESAYKVLDEIPAMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDAITYT 263

Query: 178 TILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
            ++D  CK  +  +A  +   + + + + + ++Y V+    C  K++ +A  +  EM+DR
Sbjct: 264 VLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLDR 323

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
              P+ +    V+       +++EA   + +M K  C  D    +T++H     G +  A
Sbjct: 324 SFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVSEA 383

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
           R +FD   + G +PS+ TYN +I  +C+K  +  A  ++++M  +   PN+ TYNV+I G
Sbjct: 384 RKLFDEF-DKGSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMFERKCKPNAFTYNVLIEG 442

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           L   G ++  +  +  M +  C PN  T+ IL       G+ E  +++
Sbjct: 443 LSKNGNVKEGVRVLEEMLESGCFPNKTTFLILFEGLQKLGKEEDAIKI 490



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 109/234 (46%), Gaps = 2/234 (0%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           +D   +L  +    T++  M+   + P + T+ ++        K+  A  +F  M +   
Sbjct: 266 MDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLDRSF 325

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
               +    ++D LC++ KV++A  L+ K+ +     D    + + +  C   R ++A +
Sbjct: 326 MPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVSEARK 385

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           +  E  D+G  P+L TYN ++ G    G++ EA R + +M +RKC+ +  TY  ++ G  
Sbjct: 386 LFDEF-DKGSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMFERKCKPNAFTYNVLIEGLS 444

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
             G +K    V + M+  G  P+  T+  + + L K    E+AI +    V  G
Sbjct: 445 KNGNVKEGVRVLEEMLESGCFPNKTTFLILFEGLQKLGKEEDAIKIVSMAVMNG 498


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 107/346 (30%), Positives = 179/346 (51%), Gaps = 7/346 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN- 194
           P   T+  +   Y    + D A K+  SM   G   +L ++N +++ LC+  ++E+    
Sbjct: 236 PNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGV 295

Query: 195 LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           L ++ R  F  D ++YN + NG+C V   ++AL +  EM+  GL P++ TY  ++    +
Sbjct: 296 LAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCK 355

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
           AG +  A  FF +M  R    + VTYT++++GF   G +  A  ++D M+  G  P++ T
Sbjct: 356 AGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVT 415

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YNA++   C    +E AI +   M GKG  P+  +Y+ +I G C   E++RA +    M 
Sbjct: 416 YNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMV 475

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
           +    P+  TY+ LI+  C+   +    +LF++M +   LP+  TY  LI+      K  
Sbjct: 476 EKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYC---KEG 532

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           DL  A  L  EM+ +GF+P   T+N ++NGL     Q   +E  RL
Sbjct: 533 DLNEALNLHDEMIKKGFLPDTVTYNVLINGL---NKQARTREAKRL 575



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 191/363 (52%), Gaps = 7/363 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA--IIAERYVSAGKADRAVKIFL 162
           S++  +D   R R        V+R + ++ G +   F+  I+   + +AG  +  ++ F 
Sbjct: 169 SYNAILDSIVRCRKPVIFAEKVYR-EMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFE 227

Query: 163 SMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVK 221
            M  + C  ++ ++NT++   CK K++++A+ L +    +  + ++++YN++ NG C V 
Sbjct: 228 EMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVG 287

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
           R  +   VL EM  +G  P+  TYN ++ GY + G   +A     EM +     DVVTYT
Sbjct: 288 RIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYT 347

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
           ++++     G + RA   FD M   G+ P+  TY ++I    +K  ++ A  +++EM+  
Sbjct: 348 SLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRS 407

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
           G+ P   TYN ++ G C +G ME A+  +  M+     P+V +Y+ +I  FC   E++R 
Sbjct: 408 GFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRA 467

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
            ++  +M      P+  TY+ LI  +  +++ ++   A  L  EM+++  +P +FT+  +
Sbjct: 468 FQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNE---ACDLFQEMLNKSLLPDEFTYTSL 524

Query: 462 LNG 464
           +NG
Sbjct: 525 ING 527



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 129/489 (26%), Positives = 216/489 (44%), Gaps = 44/489 (8%)

Query: 18  IYRGLSPLTTTSPAPLPPAA-----------------ADPAALASLILTSTDPRTLTQTL 60
           IYR LS L++ + A L   A                   P   + L+L + + RTLT   
Sbjct: 8   IYRSLSTLSSPTDALLAEKALTLLKRYPYHLNSISSQITPELASYLLLQTQNDRTLTLKF 67

Query: 61  --------------HCPSLHWTPQL-----VDQIIKRLWNHAL--KALHFFNILSYHPTY 99
                          C +LH   +         + + L  +++  K  +FF  L      
Sbjct: 68  INFAKPHQFFNPHCKCIALHILTKFKLYKTAQNLAQDLAENSVDEKGNYFFQCLKDTYFM 127

Query: 100 AHSPSS-FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGK-ADRA 157
            +S S+ FD  +   + L        +V   K     P   ++  I +  V   K    A
Sbjct: 128 CNSSSAVFDLVVKSCSYLNFIEKALNIVDLAKLNGFMPGVLSYNAILDSIVRCRKPVIFA 187

Query: 158 VKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANG 216
            K++  M   G   ++ S+N ++   C    +E     F+   R +   +V++YN +   
Sbjct: 188 EKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGA 247

Query: 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID 276
           +C +KR ++A ++L+ M   GL PNL TYN+V+ G  R G+IEE      EM ++    D
Sbjct: 248 YCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPD 307

Query: 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE 336
            VTY T+V+G+  VG   +A  +   M+  G+ P V TY ++I  +CK  ++  A+  F+
Sbjct: 308 GVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFD 367

Query: 337 EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
           +M  +G  PN  TY  +I G    G M+ A      M      P + TYN L+   C +G
Sbjct: 368 QMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSG 427

Query: 397 EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
            +E  + L   M      P++ +Y+ +I+  F R +  D   A ++  EMV++G  P   
Sbjct: 428 RMEEAIGLLRGMEGKGLSPDVVSYSTIIAG-FCRYQELDR--AFQMNAEMVEKGVSPDAI 484

Query: 457 TFNRVLNGL 465
           T++ ++ GL
Sbjct: 485 TYSSLIQGL 493



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 96/375 (25%), Positives = 189/375 (50%), Gaps = 19/375 (5%)

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           +A    +++  ++   ++ ++     L   M    L P   T+  +      AG  +RA+
Sbjct: 304 FAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAM 363

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGW 217
           + F  MH  G R +  ++ ++++   ++  +++AY ++ ++ R  F   +++YN + NG 
Sbjct: 364 EFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGH 423

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           C+  R  +A+ +L+ M  +GL+P++ +Y+ ++ G+ R  +++ A++   EM ++    D 
Sbjct: 424 CVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDA 483

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           +TY++++ G      +  A ++F  M+N  +LP   TY ++I   CK+  +  A+ + +E
Sbjct: 484 ITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDE 543

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI---------- 387
           M+ KG++P++ TYNV+I GL        A   + ++  DE  PN  TY+           
Sbjct: 544 MIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEF 603

Query: 388 -----LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
                LI+ FC  G +    ++FE M      PN   YN++I       +  ++  A KL
Sbjct: 604 KSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHG---HCRDGNVHKAHKL 660

Query: 443 LIEMVDRGFMPRKFT 457
             EMVD GF+P   T
Sbjct: 661 YKEMVDFGFIPHTVT 675



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 145/309 (46%), Gaps = 18/309 (5%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M+   L P   +++ I   +    + DRA ++   M E G      ++++++  LC
Sbjct: 435 LLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLC 494

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           +++++ +A +LF+    K    D  +Y  + NG+C     N+AL +  EM+ +G  P+  
Sbjct: 495 EQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTV 554

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH---------------GFG 288
           TYN+++ G  +  +  EA R  L++   +   + +TY T++                GF 
Sbjct: 555 TYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFC 614

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
           + G +  A  VF+ M+     P+ A YN +I   C+  +V  A  +++EMV  G++P++ 
Sbjct: 615 MKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTV 674

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECE-PNVQTYNILIRYFCDAGEIERGLELFEK 407
           T   +++ L   G M+  L  V R     C+  + +    L++     G I+    L  +
Sbjct: 675 TIIALVKALYSEG-MDEQLNLVIRDILRSCKLSDAELSKALVQINHKEGNIDAVFNLLTE 733

Query: 408 MGSGVCLPN 416
           M     LP+
Sbjct: 734 MAKDGFLPS 742



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 99/237 (41%), Gaps = 44/237 (18%)

Query: 257 QIEEAWRFFLEMKKRK---CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
            ++E   +F +  K     C      +  +V     +  I++A N+ D     G +P V 
Sbjct: 109 SVDEKGNYFFQCLKDTYFMCNSSSAVFDLVVKSCSYLNFIEKALNIVDLAKLNGFMPGVL 168

Query: 314 TYNAMIQ--VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
           +YNA++   V C+K  V  A  V+ EM+  G                             
Sbjct: 169 SYNAILDSIVRCRK-PVIFAEKVYREMIASG----------------------------- 198

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
                    NV +YNILIR FC AG +E GL  FE+M    CLPN+ TYN +I +    K
Sbjct: 199 ------VSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLK 252

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           + D+   A KLL  M   G  P   T+N V+NGL  +G       +L    R G  P
Sbjct: 253 RIDE---AFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAP 306


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 106/357 (29%), Positives = 182/357 (50%), Gaps = 5/357 (1%)

Query: 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
           + P   T+ I+     + G+ + AV +   M   GC  +  ++NT++   C+  +++ A 
Sbjct: 148 VAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAE 207

Query: 194 NLFKVFR--GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
            +  + R  G  K +++++N + NG C   R   A +V  EMV  GL P++ +YN +L G
Sbjct: 208 RVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSG 267

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
           Y + G + E+   F EM +R    DVVT+T+++H     G +++A  +   M   G+  +
Sbjct: 268 YCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMN 327

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
             T+ A+I   CKK  +++A+L  EEM   G  P+   YN +I G C  G M+ A E + 
Sbjct: 328 EVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIR 387

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
            M+    +P+V TY+ +I  +C  G ++   +L +KM     LP+  TY+ LI  +   K
Sbjct: 388 EMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEK 447

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           + +D   A +L   M+  G  P +FT+  +++G    GN   A  +     R G LP
Sbjct: 448 RLND---ACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLP 501



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 104/388 (26%), Positives = 188/388 (48%), Gaps = 41/388 (10%)

Query: 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG-CR 170
           L AR R    V  +V  M+     P   T+  +   +  AG+ D A ++   M E G  +
Sbjct: 162 LCARGRLEEAVG-VVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAK 220

Query: 171 QSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEV 229
            +L +FN++++ LCK  ++E A  +F ++ R     DV+SYN + +G+C V   +++L V
Sbjct: 221 PNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAV 280

Query: 230 LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR------------------ 271
             EM  RGL P++ T+  ++    +AG +E+A     +M++R                  
Sbjct: 281 FSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCK 340

Query: 272 ---------------KCEI--DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
                          KC I   VV Y  +++G+  +G +  AR +   M    V P V T
Sbjct: 341 KGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVT 400

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y+ +I   CK  ++++A  + ++M+ KG +P++ TY+ +IRGLC    +  A E    M 
Sbjct: 401 YSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENML 460

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
               +P+  TY  LI   C  G +E+ L L ++M     LP++ TY++LI+ +    ++ 
Sbjct: 461 QLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTK 520

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           +   A +LL ++     +P    ++ ++
Sbjct: 521 E---AHRLLFKLYHEDPVPDNIKYDALM 545



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 158/318 (49%), Gaps = 4/318 (1%)

Query: 172 SLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLK 231
           S+ ++N +L  L           L  + R     +V +YN++    C   R  +A+ V+ 
Sbjct: 117 SVPAYNAVLLALSDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVG 176

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR-KCEIDVVTYTTIVHGFGVV 290
           +M   G  PN  TYN ++  + RAG+++ A R    M++    + ++VT+ ++V+G    
Sbjct: 177 DMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKA 236

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           G ++ AR VFD MV  G+ P V +YN ++   CK   +  ++ VF EM  +G +P+  T+
Sbjct: 237 GRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTF 296

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
             +I   C  G +E+A+  V +M++     N  T+  LI  FC  G ++  L   E+M  
Sbjct: 297 TSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRK 356

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
               P++  YN LI+      + D   +A +L+ EM  +   P   T++ +++G   +GN
Sbjct: 357 CGIQPSVVCYNALINGYCKLGRMD---LARELIREMEAKRVKPDVVTYSTIISGYCKVGN 413

Query: 471 QGLAKEILRLQSRCGRLP 488
              A ++ +   + G LP
Sbjct: 414 LDSAFQLNQKMLKKGVLP 431



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 153/351 (43%), Gaps = 51/351 (14%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M    L P   TF  +      AG  ++AV +   M E G R +  +F  ++D  CK+  
Sbjct: 284 MTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGF 343

Query: 189 VEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           ++ A    +  R    +  V+ YN + NG+C + R + A E+++EM  + + P++ TY+ 
Sbjct: 344 LDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYST 403

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ GY + G ++ A++   +M K+    D +TY++++ G      +  A  +F+ M+  G
Sbjct: 404 IISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLG 463

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL---------- 357
           V P   TY  +I   CK+ +VE A+ + +EM+ KG +P+  TY+V+I GL          
Sbjct: 464 VQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAH 523

Query: 358 ----------------------------------------CHTGEMERALEFVGRMKDDE 377
                                                   C  G M+ A +    M D  
Sbjct: 524 RLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRN 583

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
            + +   Y+ILI   C  G + + L   ++M      PN  +   L+  +F
Sbjct: 584 WKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLF 634



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/344 (21%), Positives = 151/344 (43%), Gaps = 19/344 (5%)

Query: 126 VHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185
           V  M+   + P+   +  +   Y   G+ D A ++   M     +  + +++TI+   CK
Sbjct: 351 VEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCK 410

Query: 186 EKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
              ++ A+ L  K+ +     D I+Y+ +  G C  KR N A E+ + M+  G+ P+  T
Sbjct: 411 VGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFT 470

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           Y  ++ G+ + G +E+A     EM ++    DVVTY+ +++G       K A  +   + 
Sbjct: 471 YTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLY 530

Query: 305 NGGVLPSVATYN---------------AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
           +   +P    Y+               A+++  C K  ++ A  V++ M+ + +  + + 
Sbjct: 531 HEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSV 590

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
           Y+++I G C  G + +AL F  +M      PN  +   L+R   + G +       + + 
Sbjct: 591 YSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLL 650

Query: 410 SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
           +   L + +    LI    + +K  ++     +L  M   G +P
Sbjct: 651 TCCPLADAEASKALID---LNRKEGNVDALIDVLCGMARDGLLP 691



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 88/166 (53%), Gaps = 9/166 (5%)

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G  PSV  YNA++  L    S+ +A      M+  G  PN  TYN+++R LC  G +E A
Sbjct: 113 GYAPSVPAYNAVLLAL-SDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEA 171

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEI---ERGLELFEKMGSGVCLPNLDTYNIL 423
           +  VG M+   C PN  TYN L+  FC AGE+   ER + L  + G+    PNL T+N +
Sbjct: 172 VGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAK--PNLVTFNSM 229

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
           ++ +    K+  +  A K+  EMV  G  P   ++N +L+G   +G
Sbjct: 230 VNGLC---KAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVG 272



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 121/253 (47%), Gaps = 16/253 (6%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M++  + P   T++ I   Y   G  D A ++   M + G      ++++++  LC
Sbjct: 385 LIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLC 444

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           +EK++  A  LF+ + +   + D  +Y  + +G C      KAL +  EM+ +G+ P++ 
Sbjct: 445 EEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVV 504

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY---------------TTIVHGFG 288
           TY++++ G  ++ + +EA R   ++       D + Y                 ++ GF 
Sbjct: 505 TYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFC 564

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
           + G +K A  V+  M++       + Y+ +I   C+  +V  A+   ++M+  G+ PNST
Sbjct: 565 MKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNST 624

Query: 349 TYNVVIRGLCHTG 361
           +   ++RGL   G
Sbjct: 625 STISLVRGLFEEG 637



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/249 (20%), Positives = 107/249 (42%), Gaps = 19/249 (7%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           RL D      L   M  L + P + T+  + + +   G  ++A+ +   M   G    + 
Sbjct: 448 RLND---ACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVV 504

Query: 175 SFNTILDLLCKEKKVEKAYNL-FKVFRGKFKADVISYNVIA---------------NGWC 218
           +++ +++ L K  + ++A+ L FK++      D I Y+ +                 G+C
Sbjct: 505 TYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFC 564

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
           +     +A +V + M+DR    + + Y+I++ G+ R G + +A  F  +M +     +  
Sbjct: 565 MKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNST 624

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           +  ++V G    G +  A N    ++    L       A+I +  K+ +V+  I V   M
Sbjct: 625 STISLVRGLFEEGMVVEADNAIQDLLTCCPLADAEASKALIDLNRKEGNVDALIDVLCGM 684

Query: 339 VGKGYMPNS 347
              G +P+S
Sbjct: 685 ARDGLLPSS 693


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 110/377 (29%), Positives = 192/377 (50%), Gaps = 6/377 (1%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           S+F+  I    +    R    ++  M +  L P +KTF  + + ++     + A++I   
Sbjct: 200 STFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKEL 259

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRT 223
           M E GC  +  S N +++ LCKE ++E+A        G F  D +++N + NG C     
Sbjct: 260 MVESGCELTSVSVNVLVNGLCKEGRIEEALRFIYEEEG-FCPDQVTFNALVNGLCRTGHI 318

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            + LE++  M+++G   ++ TYN ++ G  + G+I+EA      M  R CE + VTY T+
Sbjct: 319 KQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTL 378

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +        ++ A  +   + + GVLP V T+N++IQ LC   + E A+ +FEEM  KG 
Sbjct: 379 IGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGC 438

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+  TY+++I  LC    ++ AL  +  M+   C  NV  YN LI   C    +    +
Sbjct: 439 DPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAED 498

Query: 404 LFEKMGS-GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           +F++M   GV   ++ TYN LI+ +   K+ ++   A +L+ +M+  G  P KFT+  +L
Sbjct: 499 IFDQMEMLGVSRSSV-TYNTLINGLCKSKRVEE---AAQLMDQMIMEGLKPDKFTYTTML 554

Query: 463 NGLLLIGNQGLAKEILR 479
                 G+   A +I++
Sbjct: 555 KYFCQQGDIKRAADIVQ 571



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 165/317 (52%), Gaps = 8/317 (2%)

Query: 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISY 210
           G+ D AV+I   M    C  +  ++NT++  LCKE  VE A  L +V   K    DV ++
Sbjct: 351 GEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTF 410

Query: 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
           N +  G CL      A+E+ +EM ++G +P+  TY+I+++      +++EA     EM+ 
Sbjct: 411 NSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMEL 470

Query: 271 RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
             C  +VV Y T++ G      +  A ++FD M   GV  S  TYN +I  LCK   VE 
Sbjct: 471 SGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEE 530

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           A  + ++M+ +G  P+  TY  +++  C  G+++RA + V  M  + CEP++ TY  LI 
Sbjct: 531 AAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIG 590

Query: 391 YFCDAGEIERGLELFE--KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
             C AG ++   +L    +M   V  P    YN +I ++  RK++ +   A +L  EM++
Sbjct: 591 GLCKAGRVDVASKLLRSVQMKGMVLTPQ--AYNPVIQALCKRKRTKE---AMRLFREMME 645

Query: 449 RGFMPRKFTFNRVLNGL 465
           +G  P   T+  V  GL
Sbjct: 646 KGDPPDVITYKIVFRGL 662



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 109/403 (27%), Positives = 197/403 (48%), Gaps = 11/403 (2%)

Query: 67  WTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLV 126
           ++P  +  +++R  + +  AL  F   S  P Y+  PS F   +   AR   + ++ TL+
Sbjct: 57  FSPSQLLDLLRRQPDSS-SALSLFQWASAQPNYSAHPSVFHELLRQLARAGSFDSMLTLL 115

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK-IFLSMH-EHGCRQSLNSFNTILDLLC 184
            +M S  +   + TF I  E Y ++      +  +FL M  +   +     +N  L LL 
Sbjct: 116 RQMHSSKIPVDESTFLIFLETYATSHHLHAEINPLFLLMERDFAVKPDTRFYNVALSLLV 175

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  K++    L  K+       DV ++N++    C   +   A+ +L++M + GL P+  
Sbjct: 176 KANKLKLVETLHSKMVADAVPPDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEK 235

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA-RNVFDG 302
           T+  +++G+     +E A R    M +  CE+  V+   +V+G    G I+ A R +++ 
Sbjct: 236 TFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFIYE- 294

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
               G  P   T+NA++  LC+   ++  + + + M+ KG+  +  TYN +I GLC  GE
Sbjct: 295 --EEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGE 352

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           ++ A+E +  M   +CEPN  TYN LI   C    +E   EL   + S   LP++ T+N 
Sbjct: 353 IDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNS 412

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           LI  + +    +   +A +L  EM ++G  P +FT++ ++  L
Sbjct: 413 LIQGLCLTSNRE---IAMELFEEMKEKGCDPDEFTYSILIESL 452



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/272 (30%), Positives = 138/272 (50%), Gaps = 4/272 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L   MK     P + T++I+ E   S  +   A+ +   M   GC +++  +NT++D LC
Sbjct: 429 LFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLC 488

Query: 185 KEKKVEKAYNLFKVFR--GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           K  +V  A ++F      G  ++ V +YN + NG C  KR  +A +++ +M+  GL P+ 
Sbjct: 489 KNNRVGDAEDIFDQMEMLGVSRSSV-TYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDK 547

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TY  +LK + + G I+ A      M    CE D+VTY T++ G    G +  A  +   
Sbjct: 548 FTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRS 607

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH-TG 361
           +   G++ +   YN +IQ LCK+   + A+ +F EM+ KG  P+  TY +V RGLC+  G
Sbjct: 608 VQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMMEKGDPPDVITYKIVFRGLCNGGG 667

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
            ++ A++F   M +    P   ++  L    C
Sbjct: 668 PIQEAVDFTVEMLEKGILPEFPSFGFLAEGLC 699



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 155/389 (39%), Gaps = 75/389 (19%)

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRGK--FKADVISYNVIANGWCLVKRTNKALEVLKE 232
           S + +LDLL ++     A +LF+    +  + A    ++ +          +  L +L++
Sbjct: 58  SPSQLLDLLRRQPDSSSALSLFQWASAQPNYSAHPSVFHELLRQLARAGSFDSMLTLLRQ 117

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIE-EAWRFFLEMKKR-KCEIDVVTYTTIVHGFGVV 290
           M    +  + +T+ I L+ Y  +  +  E    FL M++    + D   Y   +      
Sbjct: 118 MHSSKIPVDESTFLIFLETYATSHHLHAEINPLFLLMERDFAVKPDTRFYNVALSLLVKA 177

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
            ++K    +   MV   V P V+T+N +I+ LCK   +  AIL+ E+M   G  P+  T+
Sbjct: 178 NKLKLVETLHSKMVADAVPPDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTF 237

Query: 351 -----------------------------------NVVIRGLCHTGEMERALEFV----- 370
                                              NV++ GLC  G +E AL F+     
Sbjct: 238 TTLMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFIYEEEG 297

Query: 371 ------------------GRMK----------DDECEPNVQTYNILIRYFCDAGEIERGL 402
                             G +K          +   E +V TYN LI   C  GEI+  +
Sbjct: 298 FCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAV 357

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           E+   M S  C PN  TYN LI ++    K + +  A +L   +  +G +P   TFN ++
Sbjct: 358 EILHHMVSRDCEPNTVTYNTLIGTLC---KENHVEAATELARVLTSKGVLPDVCTFNSLI 414

Query: 463 NGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
            GL L  N+ +A E+       G  P +F
Sbjct: 415 QGLCLTSNREIAMELFEEMKEKGCDPDEF 443



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 76/172 (44%), Gaps = 4/172 (2%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177
           D +    +V  M      P   T+  +      AG+ D A K+  S+   G   +  ++N
Sbjct: 562 DIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAYN 621

Query: 178 TILDLLCKEKKVEKAYNLFKVFRGKFK-ADVISYNVIANGWC-LVKRTNKALEVLKEMVD 235
            ++  LCK K+ ++A  LF+    K    DVI+Y ++  G C       +A++   EM++
Sbjct: 622 PVIQALCKRKRTKEAMRLFREMMEKGDPPDVITYKIVFRGLCNGGGPIQEAVDFTVEMLE 681

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
           +G+ P   ++  + +G      +E+     + M   K      + T+I+ GF
Sbjct: 682 KGILPEFPSFGFLAEGLCSLS-MEDTLIQLINMVMEKGRFS-QSETSIIRGF 731


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 101/352 (28%), Positives = 181/352 (51%), Gaps = 7/352 (1%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           R+   R    ++  ++     P   T+ ++   Y  AG+ + A+ +   M        + 
Sbjct: 149 RMGKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVV 205

Query: 175 SFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           ++NTIL  LC   K+++A  +  ++ +     DVI+Y ++    C      +A+++L EM
Sbjct: 206 TYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEM 265

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
            DRG  P++ TYN+++ G  + G+++EA +F  +M    C+ +V+T+  I+      G  
Sbjct: 266 RDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRW 325

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
             A  +   M+  G  PSV T+N +I  LC+K  +  AI + E+M   G  PNS +YN +
Sbjct: 326 MDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPL 385

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           + G C   +M+RA+E++ RM    C P++ TYN ++   C  G++E  +E+  ++ S  C
Sbjct: 386 LHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGC 445

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            P L TYN +I  +    K+   +   KLL EM  +   P   T++ ++ GL
Sbjct: 446 SPVLITYNTVIDGLAKAGKTGKAI---KLLDEMRAKDLKPDTITYSSLVGGL 494



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 107/343 (31%), Positives = 167/343 (48%), Gaps = 7/343 (2%)

Query: 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA- 205
           + V  G+ +   K   +M  HG    +    T++   C+  K  KA  + +V  G     
Sbjct: 111 QLVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVP 170

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           DVI+YNV+ +G+C     N AL VL  M    ++P++ TYN +L+    +G++++A    
Sbjct: 171 DVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVL 227

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
             M +R C  DV+TYT ++        + +A  + D M + G  P V TYN ++  +CK+
Sbjct: 228 DRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKE 287

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
             ++ AI    +M   G  PN  T+N+++R +C TG    A + +  M      P+V T+
Sbjct: 288 GRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTF 347

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           NILI + C  G + R +++ EKM    C PN  +YN L+      KK D  +   + L  
Sbjct: 348 NILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAI---EYLER 404

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           MV RG  P   T+N +L  L   G    A EIL   S  G  P
Sbjct: 405 MVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSP 447



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 186/365 (50%), Gaps = 13/365 (3%)

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
           +    ++ RM      P   T+ I+ E         +A+K+   M + GC   + ++N +
Sbjct: 221 KQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVL 280

Query: 180 LDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           ++ +CKE ++++A            + +VI++N+I    C   R   A ++L +M+ +G 
Sbjct: 281 VNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGF 340

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
           +P++ T+NI++    R G +  A     +M K  C+ + ++Y  ++HGF    ++ RA  
Sbjct: 341 SPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIE 400

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
             + MV+ G  P + TYN M+  LCK   VE+A+ +  ++  KG  P   TYN VI GL 
Sbjct: 401 YLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLA 460

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF---EKMGSGVCLP 415
             G+  +A++ +  M+  + +P+  TY+ L+      G+++  ++ F   E+MG     P
Sbjct: 461 KAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMG---VRP 517

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
           N  T+N ++  +   +++D  +     L+ M++RG  P + ++  ++ GL     +G+AK
Sbjct: 518 NAVTFNSIMLGLCKTRQTDRAI---DFLVYMINRGCKPTETSYTILIEGLAY---EGMAK 571

Query: 476 EILRL 480
           E L L
Sbjct: 572 EALEL 576



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 169/335 (50%), Gaps = 4/335 (1%)

Query: 132 LSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEK 191
           +S+ P   T+  I      +GK  +A+++   M +  C   + ++  +++  C++  V +
Sbjct: 198 MSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQ 257

Query: 192 AYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250
           A  L    R +    DV++YNV+ NG C   R ++A++ L +M   G  PN+ T+NI+L+
Sbjct: 258 AMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILR 317

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
                G+  +A +   +M ++     VVT+  +++     G + RA ++ + M   G  P
Sbjct: 318 SMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQP 377

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           +  +YN ++   CK+  ++ AI   E MV +G  P+  TYN ++  LC  G++E A+E +
Sbjct: 378 NSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEIL 437

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
            ++    C P + TYN +I     AG+  + ++L ++M +    P+  TY+ L+  +   
Sbjct: 438 NQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSRE 497

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            K D+ +   K   E    G  P   TFN ++ GL
Sbjct: 498 GKVDEAI---KFFHEFERMGVRPNAVTFNSIMLGL 529



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 149/285 (52%), Gaps = 1/285 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
            ++ M S    P   T  II     S G+   A K+   M   G   S+ +FN +++ LC
Sbjct: 296 FLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLC 355

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           ++  + +A ++  K+ +   + + +SYN + +G+C  K+ ++A+E L+ MV RG  P++ 
Sbjct: 356 RKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIV 415

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN +L    + G++E+A     ++  + C   ++TY T++ G    G+  +A  + D M
Sbjct: 416 TYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEM 475

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
               + P   TY++++  L ++  V+ AI  F E    G  PN+ T+N ++ GLC T + 
Sbjct: 476 RAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQT 535

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           +RA++F+  M +  C+P   +Y ILI      G  +  LEL  ++
Sbjct: 536 DRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALELLNEL 580



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 131/278 (47%), Gaps = 41/278 (14%)

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           L+   R G++EE ++F   M       D++  TT++ GF  +G+ ++A  + + +   G 
Sbjct: 109 LRQLVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGA 168

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
           +P V TYN MI   CK   + NA+ V + M      P+  TYN ++R LC +G++++A+E
Sbjct: 169 VPDVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAME 225

Query: 369 FVGR-----------------------------------MKDDECEPNVQTYNILIRYFC 393
            + R                                   M+D  C P+V TYN+L+   C
Sbjct: 226 VLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGIC 285

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
             G ++  ++    M S  C PN+ T+NI++ SM    +  D   A KLL +M+ +GF P
Sbjct: 286 KEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMD---AEKLLADMLRKGFSP 342

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
              TFN ++N L   G  G A +IL    + G  P   
Sbjct: 343 SVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSL 380



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 136/295 (46%), Gaps = 4/295 (1%)

Query: 63  PSLHWTPQLVDQ-IIKRLWNHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDY 119
           PS    P ++   II R      + +    +L+       SPS  +F+  I+   R    
Sbjct: 301 PSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLL 360

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
                ++ +M      P   ++  +   +    K DRA++    M   GC   + ++NT+
Sbjct: 361 GRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTM 420

Query: 180 LDLLCKEKKVEKAYNLFKVFRGKFKADV-ISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           L  LCK+ KVE A  +      K  + V I+YN + +G     +T KA+++L EM  + L
Sbjct: 421 LTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDL 480

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
            P+  TY+ ++ G  R G+++EA +FF E ++     + VT+ +I+ G     +  RA +
Sbjct: 481 KPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAID 540

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
               M+N G  P+  +Y  +I+ L  +   + A+ +  E+  KG M  S+   V 
Sbjct: 541 FLVYMINRGCKPTETSYTILIEGLAYEGMAKEALELLNELCNKGLMKRSSAEQVA 595



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 36/190 (18%)

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           VL  V + N + Q L +   +E      E MV  G +P+      +IRG C  G+  +A 
Sbjct: 99  VLEDVESNNHLRQ-LVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAA 157

Query: 368 EFVGRMKDDECEPNVQTYNILI--------------------------------RYFCDA 395
           + +  ++     P+V TYN++I                                R  CD+
Sbjct: 158 KILEVLEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDS 217

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
           G++++ +E+ ++M    C P++ TY ILI +     +   +  A KLL EM DRG  P  
Sbjct: 218 GKLKQAMEVLDRMLQRDCYPDVITYTILIEATC---RDSGVGQAMKLLDEMRDRGCTPDV 274

Query: 456 FTFNRVLNGL 465
            T+N ++NG+
Sbjct: 275 VTYNVLVNGI 284


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 115/423 (27%), Positives = 204/423 (48%), Gaps = 56/423 (13%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
           ++ +D+   +  +  M      PT  T+  I +    A +   AVK+   M + GC  ++
Sbjct: 88  SKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNI 147

Query: 174 NSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLK 231
            ++N I++ LC+E+K+++A  + +    RG F  DV++YN    G C   R ++A + L 
Sbjct: 148 YTYNVIVEGLCEERKLDEAKKMLEEMAVRGYF-PDVVTYNSFIKGLCKCDRVDEARKFLA 206

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
            M    + P++ +Y  V+ G  ++G ++ A R    M  R C  DVVTY++++ GF   G
Sbjct: 207 RM---PVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGG 263

Query: 292 EIKRARNVFDGMVN-----------------------------------GGVLPSVATYN 316
           E++RA  + D M+                                     G  P V +YN
Sbjct: 264 EVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYN 323

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN----------VVIRGLCHTGEMERA 366
           A I  LCK + V+ A  VF+ MV +G  PN+++Y+          V++ GLC  G  + A
Sbjct: 324 ACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEA 383

Query: 367 LEFVGRMKDDE-CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
                ++ D++ CEP+V  YN+++   C   +I++ L++ ++M    C  N+ T+NIL+ 
Sbjct: 384 CALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKNCC-NVVTWNILVH 442

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
            + V  +  D   A  +L+ MVD GF+P   T+  +++ +   G    A E+     + G
Sbjct: 443 GLCVDDRLSD---AETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGG 499

Query: 486 RLP 488
            +P
Sbjct: 500 CVP 502



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 176/370 (47%), Gaps = 7/370 (1%)

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           Y H+  +++  +    R   +     +   M   S  P   TFAI+      + + ++A 
Sbjct: 3   YEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKAR 62

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGW 217
           K+   M E GC      +N ++    K K   +A+  L ++ +      V++Y  I +G 
Sbjct: 63  KLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGL 122

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           C  +RT  A+++L EM D+G +PN+ TYN++++G     +++EA +   EM  R    DV
Sbjct: 123 CKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDV 182

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           VTY + + G      +  AR     M    V P V +Y  +I  LCK   +++A  + + 
Sbjct: 183 VTYNSFIKGLCKCDRVDEARKFLARM---PVTPDVVSYTTVINGLCKSGDLDSASRMLDH 239

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M  +G  P+  TY+ +I G C  GE+ERA+  +  M    C PN+  YN L+      G 
Sbjct: 240 MSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGH 299

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           I +  ++  +M      P++ +YN  I  +    K++ +  A  +   MV+RG  P   +
Sbjct: 300 IGKAEDMLVEMERRGFTPDVVSYNACIDGLC---KAERVKKAKAVFDRMVERGCTPNASS 356

Query: 458 FNRVLNGLLL 467
           ++ ++  +LL
Sbjct: 357 YSMLIVDILL 366



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 172/356 (48%), Gaps = 31/356 (8%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S+   I+   +  D  +   ++  M +    P   T++ + + +   G+ +RA+ +  SM
Sbjct: 216 SYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSM 275

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRT 223
            + GCR ++ ++N++L  L +   + KA + L ++ R  F  DV+SYN   +G C  +R 
Sbjct: 276 LKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERV 335

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            KA  V   MV+RG  PN ++Y++++                         +D++ YT +
Sbjct: 336 KKAKAVFDRMVERGCTPNASSYSMLI-------------------------VDILLYTVL 370

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVL-PSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           + G    G    A  +F  +++  +  P V  YN M+   CK+  ++ A+ + ++M+ K 
Sbjct: 371 LDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKN 430

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
              N  T+N+++ GLC    +  A   +  M D+   P+  TY  L+   C  G+    L
Sbjct: 431 CC-NVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAAL 489

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           ELFE+   G C+P++ TY+ LI+ +     +++   A  L  ++V+R ++P   T 
Sbjct: 490 ELFEEAVKGGCVPDVVTYSALITGLVHENMAEE---AYLLFTKLVERRWVPDDKTL 542



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 141/285 (49%), Gaps = 10/285 (3%)

Query: 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262
           ++ +V +YN +        R +KA  V +EM+D+   P+  T+ I+L+G  R+ Q+E+A 
Sbjct: 3   YEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKAR 62

Query: 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322
           +    MK+  C  D   Y  ++ G+    +  +A      MV    LP+V TY  ++  L
Sbjct: 63  KLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGL 122

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
           CK +   +A+ + +EM  KG  PN  TYNV++ GLC   +++ A + +  M      P+V
Sbjct: 123 CKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDV 182

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
            TYN  I+  C    ++   +   +M      P++ +Y  +I+ +    KS DL  A ++
Sbjct: 183 VTYNSFIKGLCKCDRVDEARKFLARMPV---TPDVVSYTTVINGLC---KSGDLDSASRM 236

Query: 443 LIEMVDRGFMPRKFTFNRVLNGLLLIGN----QGLAKEILRLQSR 483
           L  M +RG  P   T++ +++G    G      GL   +L+L  R
Sbjct: 237 LDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCR 281



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 114/252 (45%), Gaps = 6/252 (2%)

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           G   N+ TYN +L    R  + ++A   F EM  + C+ D  T+  ++ G     ++++A
Sbjct: 2   GYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKA 61

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
           R +   M   G +P  A YNA+I    K      A     EMV    +P   TY  ++ G
Sbjct: 62  RKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDG 121

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
           LC       A++ +  M+D  C PN+ TYN+++   C+  +++   ++ E+M      P+
Sbjct: 122 LCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPD 181

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKE 476
           + TYN  I  +    K D +  A K L  M      P   ++  V+NGL   G+   A  
Sbjct: 182 VVTYNSFIKGLC---KCDRVDEARKFLARM---PVTPDVVSYTTVINGLCKSGDLDSASR 235

Query: 477 ILRLQSRCGRLP 488
           +L   S  G  P
Sbjct: 236 MLDHMSNRGCTP 247



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 120/242 (49%), Gaps = 13/242 (5%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN---------- 177
            M+     P   ++    +    A +  +A  +F  M E GC  + +S++          
Sbjct: 309 EMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYT 368

Query: 178 TILDLLCKEKKVEKAYNLF-KVFRGKF-KADVISYNVIANGWCLVKRTNKALEVLKEMVD 235
            +LD LCK  + ++A  LF KV   K  + DV  YNV+ +  C  ++ +KAL++ K+M++
Sbjct: 369 VLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLE 428

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
           +    N+ T+NI++ G     ++ +A    L M       D VTY T+V      G+   
Sbjct: 429 KNC-CNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAA 487

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
           A  +F+  V GG +P V TY+A+I  L  ++  E A L+F ++V + ++P+  T  ++ R
Sbjct: 488 ALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLVERRWVPDDKTLGLLHR 547

Query: 356 GL 357
            L
Sbjct: 548 KL 549


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 121/430 (28%), Positives = 205/430 (47%), Gaps = 45/430 (10%)

Query: 90  FNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWT---LVHRMKSLSLGPTQKTFAIIAE 146
            +I++   +Y   P    +   L A +R  ++V     +   M    + P   T+ I+  
Sbjct: 152 LSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIR 211

Query: 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKA 205
            + +AG  +  +  F  M  +GC  ++ ++NTI+D  CK +K+ +A+ L ++   K    
Sbjct: 212 GFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNP 271

Query: 206 DVISYNVIANGWC---LVKRTNKALEVLK------------------------------- 231
           ++ISYNV+ NG C    +K T++ LE +                                
Sbjct: 272 NLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLH 331

Query: 232 -EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
            EMV  GL+PN+ TY  ++    +AG +  A  F  +M+ R    +  TYTT++ GF   
Sbjct: 332 AEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQ 391

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           G +K+A  +   MV  G  P++ TYNA+I   C    +E+A  + +EM+ +G++P+  +Y
Sbjct: 392 GFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSY 451

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           + +I G C   E+E+A +    M      P+V TY+ LI+  C    +    +LF++M S
Sbjct: 452 STIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLS 511

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
               P+  TY  LI++  +     DL  A +L  EM+ +GF P   T+N ++NG      
Sbjct: 512 LGLPPDEVTYTSLINAYCIE---GDLDKALRLHDEMIQKGFSPDIVTYNVLINGF---NK 565

Query: 471 QGLAKEILRL 480
           Q   KE  RL
Sbjct: 566 QSRTKEAKRL 575



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 190/366 (51%), Gaps = 5/366 (1%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADR-AVKI 160
           S + FD  +   AR+       ++V+  KS    P   ++  I +  +   ++ + A  I
Sbjct: 131 SSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGI 190

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCL 219
           F  M E G   ++ ++N ++   C    +E     F ++ R     +V++YN I + +C 
Sbjct: 191 FKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCK 250

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
           +++  +A ++L+ M  +GLNPNL +YN+V+ G  R GQ++E      EM KR+   D VT
Sbjct: 251 LRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVT 310

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           + T+++G+  VG   +A  +   MV  G+ P+V TY  +I  +CK  ++  A+   ++M 
Sbjct: 311 FNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMR 370

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            +G  PN  TY  +I G    G +++A + +  M ++   P + TYN LI   C  G +E
Sbjct: 371 DRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRME 430

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
               L ++M     +P++ +Y+ +IS  F R +  +L  A +L +EMV +G  P   T++
Sbjct: 431 DASGLLQEMIERGFIPDVVSYSTIISG-FCRNQ--ELEKAFQLKVEMVAKGISPDVATYS 487

Query: 460 RVLNGL 465
            ++ GL
Sbjct: 488 SLIQGL 493



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/433 (27%), Positives = 203/433 (46%), Gaps = 36/433 (8%)

Query: 64  SLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDH-----AIDLAARLRD 118
           S H+TPQ    ++ +    +   L F +       +A S   F       A+ +  R + 
Sbjct: 42  SSHFTPQASSNLLLKSQFDSSLVLKFLD-------WARSQQFFSFQCKCLALHILTRYKL 94

Query: 119 YRTVWTLVHRMKSLSLGPT-QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177
           Y+T  +L   +   ++  T +  F  +   Y                  + C+ S   F+
Sbjct: 95  YKTAQSLAEEVVVNTVDETGEDLFQCLKNSY------------------YQCKSSSAVFD 136

Query: 178 TILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALE-VLKEMVD 235
            ++    +   + KA ++  + +   F   V+SYN I +     K++ K  E + KEMV+
Sbjct: 137 LVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVE 196

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
            G++PN+ TYNI+++G+  AG +E    FF EM++  C  +VVTY TI+  +  + +I  
Sbjct: 197 SGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGE 256

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
           A  +   M   G+ P++ +YN +I  LC++  ++    + EEM  + Y+P+  T+N +I 
Sbjct: 257 AFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLIN 316

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
           G C+ G   +AL     M  +   PNV TY  LI   C AG + R +E  ++M      P
Sbjct: 317 GYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHP 376

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
           N  TY  LI       +   L  A +++ EMV+ GF P   T+N ++NG  ++G    A 
Sbjct: 377 NGRTYTTLIDGF---SQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDAS 433

Query: 476 EILRLQSRCGRLP 488
            +L+     G +P
Sbjct: 434 GLLQEMIERGFIP 446



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 107/422 (25%), Positives = 198/422 (46%), Gaps = 18/422 (4%)

Query: 63  PSLHWTPQLVDQIIK-RLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRT 121
           P++     ++D   K R    A K L    +   +P       S++  I+   R    + 
Sbjct: 236 PNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLI----SYNVVINGLCREGQMKE 291

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
              ++  M      P + TF  +   Y + G   +A+ +   M ++G   ++ ++ T+++
Sbjct: 292 TSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLIN 351

Query: 182 LLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
            +CK   + +A       R +    +  +Y  + +G+       +A +++KEMV+ G  P
Sbjct: 352 SMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTP 411

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
            + TYN ++ G+   G++E+A     EM +R    DVV+Y+TI+ GF    E+++A  + 
Sbjct: 412 TIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLK 471

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
             MV  G+ P VATY+++IQ LCK+  +     +F+EM+  G  P+  TY  +I   C  
Sbjct: 472 VEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIE 531

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
           G++++AL     M      P++ TYN+LI  F      +    L  K+     +PN  TY
Sbjct: 532 GDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITY 591

Query: 421 NILISSM-FVRKKSDDLLVAG-----------KLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
           N LI +   +  KS   L+ G           ++L  M+ +G+   +  +N +++G   +
Sbjct: 592 NTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKV 651

Query: 469 GN 470
           GN
Sbjct: 652 GN 653



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/389 (22%), Positives = 169/389 (43%), Gaps = 51/389 (13%)

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           Y     +F+  I+    + ++     L   M    L P   T+  +      AG  +RA+
Sbjct: 304 YVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAM 363

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGW 217
           +    M + G   +  ++ T++D   ++  +++AY + K +    F   +I+YN + NG 
Sbjct: 364 EFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGH 423

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           C++ R   A  +L+EM++RG  P++ +Y+ ++ G+ R  ++E+A++  +EM  +    DV
Sbjct: 424 CILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDV 483

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
            TY++++ G      +    ++F  M++ G+ P   TY ++I   C +  ++ A+ + +E
Sbjct: 484 ATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDE 543

Query: 338 MVGKGYMPNSTTYNVVI------------------------------------------- 354
           M+ KG+ P+  TYNV+I                                           
Sbjct: 544 MIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEF 603

Query: 355 -------RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
                  +G C  G M  A   +  M     + N + YN++I      G IE+   L+++
Sbjct: 604 KSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKE 663

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDL 436
           M      P+  T   L  S++   K  +L
Sbjct: 664 MLHSGFAPHSVTIMALAKSLYHEGKEVEL 692



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 130/264 (49%), Gaps = 19/264 (7%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M      P   +++ I   +    + ++A ++ + M   G    + ++++++  LC
Sbjct: 435 LLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLC 494

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K++++ +  +LF+ +       D ++Y  + N +C+    +KAL +  EM+ +G +P++ 
Sbjct: 495 KQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIV 554

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH---------------GFG 288
           TYN+++ G+ +  + +EA R  L++   +   + +TY T++                GF 
Sbjct: 555 TYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFC 614

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
           + G +  A  V + M+  G   +   YN +I    K  ++E A  +++EM+  G+ P+S 
Sbjct: 615 MKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSV 674

Query: 349 TYNVVIRGLCHTG---EMERALEF 369
           T   + + L H G   E+ + L++
Sbjct: 675 TIMALAKSLYHEGKEVELNQLLDY 698


>gi|449475988|ref|XP_004154607.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 950

 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 179/348 (51%), Gaps = 4/348 (1%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           +   W ++  +K+ ++  + + F+++ E Y  AG  ++AV+ F  M +  C+  L +FN 
Sbjct: 109 FELYWKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFSLMRDFDCKPDLFAFNL 168

Query: 179 ILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           IL  L +++    A  ++ ++ +     DV++Y ++ +G C   +T  AL +  EM DRG
Sbjct: 169 ILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRG 228

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
           + PN   Y+IVL G  +A +I +A R F +M+   C  D++TY  +++GF   G +  A 
Sbjct: 229 ILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAF 288

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
            +   +   G +  V  Y  +I  L +    E A + +++M+ +   P+   Y ++IRGL
Sbjct: 289 TLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGL 348

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
              G +  AL  +G M +    P+   YN LI+ FCD G ++    L  ++    C PN 
Sbjct: 349 SQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNN 408

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            TY+ILI  M    K+  +  A  +  EM   G +P   TFN ++NGL
Sbjct: 409 HTYSILICGMC---KNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGL 453



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 104/388 (26%), Positives = 180/388 (46%), Gaps = 52/388 (13%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            L   M    + P Q  ++I+      A K   A ++F  M   GC + L ++N +L+  
Sbjct: 219 VLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGF 278

Query: 184 CKEKKVEKAYNLF------------------------------------KVFRGKFKADV 207
           CK   ++ A+ L                                     K+ R   K DV
Sbjct: 279 CKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDV 338

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           + Y ++  G     R  +AL +L EM +RGL P+   YN ++KG+   G ++EA    LE
Sbjct: 339 MLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLE 398

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           + K  C  +  TY+ ++ G    G I +A+++F  M   G LPSV T+N++I  LCK + 
Sbjct: 399 ISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANR 458

Query: 328 VENAILVFEEM-------------VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           +E A L+F +M              G   + +  +  V++  LC +G + +A + + ++ 
Sbjct: 459 LEEARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLV 518

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
           D    P+++TYNILI  FC  G I    +LF++M     +P+  TY  LI  ++   +++
Sbjct: 519 DSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNE 578

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           D L   ++  +MV +G +P   T+  ++
Sbjct: 579 DAL---EIFEQMVKKGCVPESSTYKTIM 603



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 104/396 (26%), Positives = 183/396 (46%), Gaps = 13/396 (3%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  +    R   +     + ++M   +L P   T+ I+        K   A+ +F  M
Sbjct: 165 AFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDALVLFDEM 224

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
            + G   +   ++ +L  LC+ KK+  A  LF   R      D+I+YNV+ NG+C     
Sbjct: 225 TDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYL 284

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A  +L+ +   G    +  Y  ++ G FRA + EEA  ++ +M +   + DV+ YT +
Sbjct: 285 DDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIM 344

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G    G +  A  +   M   G+ P    YNA+I+  C    ++ A  +  E+     
Sbjct: 345 IRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKHDC 404

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN+ TY+++I G+C  G + +A      M+   C P+V T+N LI   C A  +E    
Sbjct: 405 FPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEARL 464

Query: 404 LFEKMGSGVCLPNL---------DTYNILISSMFVRK--KSDDLLVAGKLLIEMVDRGFM 452
           LF +M   V  P+L           ++I    + + +  +S  +L A KLL+++VD G +
Sbjct: 465 LFYQM-EIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVL 523

Query: 453 PRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           P   T+N ++NG    GN   A ++ +     G +P
Sbjct: 524 PDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMP 559



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 139/307 (45%), Gaps = 14/307 (4%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           R R Y        +M   ++ P    + I+       G+   A+ +   M E G R    
Sbjct: 315 RARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTI 374

Query: 175 SFNTILDLLCKEKKVEKAYNL-FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
            +N ++   C    +++A +L  ++ +     +  +Y+++  G C     NKA  + KEM
Sbjct: 375 CYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEM 434

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK-KRKCEI------------DVVTY 280
              G  P++ T+N ++ G  +A ++EEA   F +M+  RK  +            D+ + 
Sbjct: 435 EKLGCLPSVVTFNSLINGLCKANRLEEARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASL 494

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
             ++      G I +A  +   +V+ GVLP + TYN +I   CK  ++  A  +F+EM  
Sbjct: 495 QVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQL 554

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           KG+MP+S TY  +I GL   G  E ALE   +M    C P   TY  ++ + C    I  
Sbjct: 555 KGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISL 614

Query: 401 GLELFEK 407
            L ++ K
Sbjct: 615 ALSVWMK 621



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 101/224 (45%), Gaps = 3/224 (1%)

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
           T  ++++    +    E  W+   E+K    +I    ++ ++  +   G  ++A   F  
Sbjct: 94  TVQDLIIGKLIKENAFELYWKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFSL 153

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M +    P +  +N ++  L +K++   A+ V+ +M+     P+  TY ++I GLC T +
Sbjct: 154 MRDFDCKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCK 213

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
            + AL     M D    PN   Y+I++   C A +I     LF KM +  C  +L TYN+
Sbjct: 214 TQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNV 273

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
           L++        DD   A  LL  +   G +     +  ++NGL 
Sbjct: 274 LLNGFCKSGYLDD---AFTLLQLLTKDGHILGVIGYGCLINGLF 314



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/270 (20%), Positives = 111/270 (41%), Gaps = 35/270 (12%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           +  ++ ER   +G   +A K+ + + + G    + ++N +++  CK   +  A+ LFK  
Sbjct: 493 SLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEM 552

Query: 200 RGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL--------- 249
           + K    D ++Y  + +G     R   ALE+ ++MV +G  P  +TY  ++         
Sbjct: 553 QLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNI 612

Query: 250 --------------KGY-----------FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
                         +G+           F   +++ A R  LEM  +    D+  YT  +
Sbjct: 613 SLALSVWMKYLRDFRGWEDEKVRVVAESFDNEELQTAIRRLLEMDIKSKNFDLAPYTIFL 672

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            G         A  +F  + +  +  S A+   +I  LC  ++++ A+ VF   + +G+ 
Sbjct: 673 IGLVQAKRDCEAFAIFSVLKDFKMNISSASCVMLIGRLCMVENLDMAMDVFLFTLERGFR 732

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
                 N ++  L H    + AL    RM+
Sbjct: 733 LMPPICNQLLCNLLHLDRKDDALFLANRME 762



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 93/210 (44%), Gaps = 6/210 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+  + +    AG+ + A++IF  M + GC    +++ TI+   C+E  +  A ++
Sbjct: 559 PDSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLALSV 618

Query: 196 FKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           +  +   F+  +     V+A  +   +    A+  L EM  +  N +L  Y I L G  +
Sbjct: 619 WMKYLRDFRGWEDEKVRVVAESFD-NEELQTAIRRLLEMDIKSKNFDLAPYTIFLIGLVQ 677

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG--VLPSV 312
           A +  EA+  F  +K  K  I   +   ++    +V  +  A +VF   +  G  ++P +
Sbjct: 678 AKRDCEAFAIFSVLKDFKMNISSASCVMLIGRLCMVENLDMAMDVFLFTLERGFRLMPPI 737

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
              N ++  L   D  ++A+ +   M   G
Sbjct: 738 C--NQLLCNLLHLDRKDDALFLANRMEASG 765


>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 107/369 (28%), Positives = 192/369 (52%), Gaps = 13/369 (3%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID A RLRD         +M+S  L P   T+  + +       +D A K+   M   G 
Sbjct: 332 IDEAVRLRD---------KMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGV 382

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
           +++  + N ++   C E K+++A N + K+    F  D  +YN + NG+C   +  +A +
Sbjct: 383 KENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYK 442

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           ++ EM  +GL  +  T N +L       Q+++A+   ++ +KR   +D VTY T++ G+ 
Sbjct: 443 MMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYF 502

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
              +  RA  +++ M   G++ ++ TYN +I+ LC     + A+    E++ KG +P+ +
Sbjct: 503 KDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDES 562

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           T N++I G C  G +E+A +F  +M +   +P++ T NIL+R  C  G +E+GL LF   
Sbjct: 563 TSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTW 622

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
            S     +  TYNI+ISS    ++ +D   A  L+ EM  +   P ++T+N ++ GL   
Sbjct: 623 ISKGKPMDTVTYNIIISSFCKERRLED---AFDLMTEMEGKNLEPDRYTYNAIVTGLTKA 679

Query: 469 GNQGLAKEI 477
           G    A+++
Sbjct: 680 GRTEEAEKL 688



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 153/294 (52%), Gaps = 10/294 (3%)

Query: 197 KVFRGKFKADVISYNVIANGWCLVKRTNK-----ALEVLKEMVDRGLNPNLTTYNIVLKG 251
           K+ R +F+ ++++ N + N   LV+  +      + EV ++ V  G+ PN+ T+NI++ G
Sbjct: 163 KMKRLRFRPNLLTCNTLLNA--LVRSNSSHSLVFSREVFQDAVKLGVQPNVNTFNILIHG 220

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
           Y      EEA R   +M +  C  D VTY T++       ++ + R++   M N G+ P+
Sbjct: 221 YCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKNSGLFPN 280

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
             TYN ++   CK   ++ A  V E M GKG +P+  TYN ++RGLC  G+++ A+    
Sbjct: 281 RNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRD 340

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
           +M+  +  P+V TYN LI    +    +   +L E+M +     N  T+NI+I       
Sbjct: 341 KMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMIKWFCTEG 400

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
           K D+   A  ++++MV+ GF P  FT+N ++NG    G    A +++    R G
Sbjct: 401 KIDE---ASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKG 451



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 103/361 (28%), Positives = 175/361 (48%), Gaps = 6/361 (1%)

Query: 132 LSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEK 191
           L + P   TF I+   Y S    + A+++   M E+GC     ++NT+L  LCK  ++ +
Sbjct: 205 LGVQPNVNTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQ 264

Query: 192 AYNLFKVFR--GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL 249
             +L    +  G F  +  +YN++ +G+C +K   +A EV++ M  +G+ P++ TYN ++
Sbjct: 265 VRDLLLQMKNSGLF-PNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMV 323

Query: 250 KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
           +G    G+I+EA R   +M+  K   DVVTY T++ G         A  + + M   GV 
Sbjct: 324 RGLCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVK 383

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
            +  T+N MI+  C +  ++ A  V  +MV  G+ P+  TYN +I G C  G+M  A + 
Sbjct: 384 ENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKM 443

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
           +  M     + +  T N L+   C   +++    L  K      + +  TY  LI   F 
Sbjct: 444 MDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFK 503

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPR 489
            +++D  L   KL  EM + G +    T+N ++ GL L G    A + L      G +P 
Sbjct: 504 DEQADRAL---KLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPD 560

Query: 490 Q 490
           +
Sbjct: 561 E 561



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 167/347 (48%), Gaps = 4/347 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID     R     + LV  MK+  +     T  I+ + + + GK D A  + + M
Sbjct: 353 TYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASNVMVKM 412

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
            E G      ++NT+++  CK  K+ +AY +  ++ R   K D  + N + +  CL K+ 
Sbjct: 413 VESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQL 472

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A  +  +   RG   +  TY  ++ GYF+  Q + A + + EMK+      ++TY TI
Sbjct: 473 DDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTI 532

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G  + G+  +A +  + ++  G++P  +T N +I   C + +VE A     +MV    
Sbjct: 533 IRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSL 592

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+  T N+++RGLC  G +E+ L             +  TYNI+I  FC    +E   +
Sbjct: 593 KPDIFTCNILLRGLCREGMLEKGLTLFNTWISKGKPMDTVTYNIIISSFCKERRLEDAFD 652

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450
           L  +M      P+  TYN +++ +    ++++   A KL ++  ++G
Sbjct: 653 LMTEMEGKNLEPDRYTYNAIVTGLTKAGRTEE---AEKLALKFAEKG 696



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 167/345 (48%), Gaps = 9/345 (2%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV---KIFLSMHEHGCRQSLNSFNTILD 181
           + ++MK L   P   T   +    V +  +   V   ++F    + G + ++N+FN ++ 
Sbjct: 160 IFNKMKRLRFRPNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVKLGVQPNVNTFNILIH 219

Query: 182 LLCKEKKVEKAYNLFKVFRGKFKA--DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
             C +   E+A  L     G++    D ++YN +    C   +  +  ++L +M + GL 
Sbjct: 220 GYCSDNNTEEALRLINQM-GEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKNSGLF 278

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           PN  TYNI++ GY +   ++EA      M  +    DV TY T+V G    G+I  A  +
Sbjct: 279 PNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRL 338

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
            D M +  ++P V TYN +I    +    + A  + EEM  +G   N  T+N++I+  C 
Sbjct: 339 RDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMIKWFCT 398

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419
            G+++ A   + +M +    P+  TYN +I  +C AG++    ++ ++MG      +  T
Sbjct: 399 EGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFT 458

Query: 420 YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
            N L+ +M + K+ DD   A  L ++   RG++  + T+  ++ G
Sbjct: 459 LNTLLHTMCLEKQLDD---AYTLTMKARKRGYILDEVTYGTLIMG 500



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 164/354 (46%), Gaps = 49/354 (13%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           +M      P   T+  +   Y  AGK   A K+   M   G +    + NT+L  +C EK
Sbjct: 411 KMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEK 470

Query: 188 KVEKAYNLFKVFR----------------GKFK--------------------ADVISYN 211
           +++ AY L    R                G FK                    A +I+YN
Sbjct: 471 QLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYN 530

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
            I  G CL  +T++A++ L E++++GL P+ +T NI++ GY   G +E+A++F  +M + 
Sbjct: 531 TIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEH 590

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
             + D+ T   ++ G    G +++   +F+  ++ G      TYN +I   CK+  +E+A
Sbjct: 591 SLKPDIFTCNILLRGLCREGMLEKGLTLFNTWISKGKPMDTVTYNIIISSFCKERRLEDA 650

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA----LEFVGR---MKDDECEPNVQT 384
             +  EM GK   P+  TYN ++ GL   G  E A    L+F  +   +K  +  P + T
Sbjct: 651 FDLMTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEAEKLALKFAEKGQQVKTQDTSPELGT 710

Query: 385 YNIL----IRYFCDAGEIERGLELFEKMGS-GVCLPNLDTYNILISSMFVRKKS 433
            +++    I   C  G+ +  ++LF++    GV L N  TY  L+  +  R+KS
Sbjct: 711 SDMMYSEQISSLCTQGKYKDAMKLFQQAEQKGVSL-NKYTYIKLMDGLLKRRKS 763


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 107/363 (29%), Positives = 180/363 (49%), Gaps = 5/363 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV-KIFLS 163
           +++  ID   +  D          M      P   T+ I+   +  AG  D A   +   
Sbjct: 198 TYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQE 257

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKR 222
              +GC   ++++  I+D L K KK+E+A  L  K+        + +YN + NG C + R
Sbjct: 258 TTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGR 317

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
             +A+++L+++VD G  P++ TY  ++ G  +  +  EA++ F EM  R   +D V YT 
Sbjct: 318 LEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTA 377

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++      G+I +A +V+  M + G +P V T + MI  L K   +  A+ +F+ M  +G
Sbjct: 378 LIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARG 437

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
             PN   Y+ +I GLC   +M+ ALE + +MK   C P+  TYNILI   C +G++E   
Sbjct: 438 LAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAAR 497

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
             F++M    C P++ TYNILIS  F +  + D   A  +  +M          T+  ++
Sbjct: 498 AFFDEMLEAGCKPDVYTYNILISG-FCKAGNTD--AACGVFDDMSSSRCSANVVTYGALI 554

Query: 463 NGL 465
           +GL
Sbjct: 555 SGL 557



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 101/329 (30%), Positives = 172/329 (52%), Gaps = 5/329 (1%)

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYN 211
           K + AV +   +  +GC  ++ ++N +L+ LCK  ++E+A +L  K+       DV++Y 
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 60

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
            + +G    KR+ +A ++ KEM  RGL  +   Y  +++   + G+I +A   +  M   
Sbjct: 61  SLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSH 120

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
            C  DVVT +T++ G    G I  A  +F  M   G+ P+   Y+A+I  LCK   ++ A
Sbjct: 121 GCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCA 180

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
           + +  +M      P++ TYNV+I GLC +G++E A  F   M +  C+P+V TYNILI  
Sbjct: 181 LEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISG 240

Query: 392 FCDAGEIERGL-ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450
           FC AG  +     L ++     C  ++ TY  ++  +   KK ++   A  L+ ++   G
Sbjct: 241 FCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEE---AVALMEKITANG 297

Query: 451 FMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
             P   T+N +LNGL  +G    A ++LR
Sbjct: 298 CTPTIATYNALLNGLCKMGRLEEAIDLLR 326



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/412 (23%), Positives = 184/412 (44%), Gaps = 42/412 (10%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   ID   + +     + L   M    L      +  +    +  GK  +A  ++ +M
Sbjct: 58  TYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTM 117

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRT 223
             HGC   + + +T++D L K  ++  A  +FK    +  A + + Y+ + +G C  ++ 
Sbjct: 118 TSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKM 177

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + ALE+L +M      P+  TYN+++ G  ++G +E A  FF EM +  C+ DV TY  +
Sbjct: 178 DCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNIL 237

Query: 284 VHGFGVVGEIKRARNVF--DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
           + GF   G    A +    +  +NG  +  + TY A++  L K   +E A+ + E++   
Sbjct: 238 ISGFCKAGNTDAASHSLAQETTINGCTI-DIHTYTAIVDWLAKNKKIEEAVALMEKITAN 296

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN--------------- 386
           G  P   TYN ++ GLC  G +E A++ + ++ D+ C P+V TY                
Sbjct: 297 GCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEA 356

Query: 387 --------------------ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
                                LIR     G+I +   +++ M S  C+P++ T + +I  
Sbjct: 357 YKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDG 416

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           +    K+  +  A ++   M  RG  P +  ++ +++GL        A E+L
Sbjct: 417 L---SKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEML 465



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 163/344 (47%), Gaps = 7/344 (2%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+ ++ +    PT  T+  +       G+ + A+ +   + ++GC   + ++ +++D L 
Sbjct: 8   LMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLG 67

Query: 185 KEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           KEK+  +AY LFK    RG    D + Y  +        +  +A  V K M   G  P++
Sbjct: 68  KEKRSFEAYKLFKEMALRG-LALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDV 126

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            T + ++ G  +AG+I  A R F  M+ R    + V Y+ ++HG     ++  A  +   
Sbjct: 127 VTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQ 186

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M      P   TYN +I  LCK   VE A   F+EM+  G  P+  TYN++I G C  G 
Sbjct: 187 MKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGN 246

Query: 363 MERALEFVGRMKD-DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
            + A   + +    + C  ++ TY  ++ +     +IE  + L EK+ +  C P + TYN
Sbjct: 247 TDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYN 306

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            L++ +    K   L  A  LL ++VD G  P   T+  +++GL
Sbjct: 307 ALLNGLC---KMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGL 347



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 1/124 (0%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           + R       ++ +MK     P   T+ I+ +    +G  + A   F  M E GC+  + 
Sbjct: 454 KARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVY 513

Query: 175 SFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           ++N ++   CK    + A  +F  +   +  A+V++Y  + +G C  ++  KA    + M
Sbjct: 514 TYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGLCKRRQLTKASLYFQHM 573

Query: 234 VDRG 237
            +RG
Sbjct: 574 KERG 577


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 102/352 (28%), Positives = 180/352 (51%), Gaps = 7/352 (1%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           RL   R    ++  ++     P   T+ ++   Y  AG+ + A+ +   M        + 
Sbjct: 149 RLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVV 205

Query: 175 SFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           ++NTIL  LC   K+++A  +  ++ +     DVI+Y ++    C       A+++L EM
Sbjct: 206 TYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEM 265

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
            DRG  P++ TYN+++ G  + G+++EA +F  +M    C+ +V+T+  I+      G  
Sbjct: 266 RDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRW 325

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
             A  +   M+  G  PSV T+N +I  LC+K  +  AI + E+M   G  PNS +YN +
Sbjct: 326 MDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPL 385

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           + G C   +M+RA+E++ RM    C P++ TYN ++   C  G++E  +E+  ++ S  C
Sbjct: 386 LHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGC 445

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            P L TYN +I  +    K+   +   KLL EM  +   P   T++ ++ GL
Sbjct: 446 SPVLITYNTVIDGLAKAGKTGKAI---KLLDEMRAKDLKPDTITYSSLVGGL 494



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 185/365 (50%), Gaps = 13/365 (3%)

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
           +    ++ RM      P   T+ I+ E          A+K+   M + GC   + ++N +
Sbjct: 221 KQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVL 280

Query: 180 LDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           ++ +CKE ++++A            + +VI++N+I    C   R   A ++L +M+ +G 
Sbjct: 281 VNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGF 340

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
           +P++ T+NI++    R G +  A     +M +  C+ + ++Y  ++HGF    ++ RA  
Sbjct: 341 SPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIE 400

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
             + MV+ G  P + TYN M+  LCK   VE+A+ +  ++  KG  P   TYN VI GL 
Sbjct: 401 YLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLA 460

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF---EKMGSGVCLP 415
             G+  +A++ +  M+  + +P+  TY+ L+      G+++  ++ F   E+MG     P
Sbjct: 461 KAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMG---IRP 517

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
           N  T+N ++  +   +++D  +     L+ M++RG  P + ++  ++ GL     +G+AK
Sbjct: 518 NAVTFNSIMLGLCKSRQTDRAI---DFLVFMINRGCKPNETSYTILIEGLAY---EGMAK 571

Query: 476 EILRL 480
           E L L
Sbjct: 572 EALEL 576



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/425 (26%), Positives = 191/425 (44%), Gaps = 49/425 (11%)

Query: 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
            +  S    I L +R R+   + +   +++S  L    + F  ++  Y ++         
Sbjct: 35  RTSGSISSKIPLGSRKRNRLVLVSAASKVESSGLNGRAQKFETLSSGYSNSNGNGH---- 90

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWC 218
           + S++     + + S N +  ++ +  ++E+ +   +  V+ G    D+I    +  G+C
Sbjct: 91  YSSVNSSFALEDVESNNHLRQMV-RTGELEEGFKFLENMVYHGNV-PDIIPCTTLIRGFC 148

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
            + +T KA ++L+ +   G  P++ TYN+++ GY +AG+I  A      M       DVV
Sbjct: 149 RLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVV 205

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TY TI+      G++K+A  V D M+     P V TY  +I+  C+   V +A+ + +EM
Sbjct: 206 TYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEM 265

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE- 397
             +G  P+  TYNV++ G+C  G ++ A++F+  M    C+PNV T+NI++R  C  G  
Sbjct: 266 RDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRW 325

Query: 398 ----------------------------------IERGLELFEKMGSGVCLPNLDTYNIL 423
                                             + R +++ EKM    C PN  +YN L
Sbjct: 326 MDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPL 385

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           +      KK D  +   + L  MV RG  P   T+N +L  L   G    A EIL   S 
Sbjct: 386 LHGFCKEKKMDRAI---EYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSS 442

Query: 484 CGRLP 488
            G  P
Sbjct: 443 KGCSP 447



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 150/285 (52%), Gaps = 1/285 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
            ++ M S    P   T  II     S G+   A K+   M   G   S+ +FN +++ LC
Sbjct: 296 FLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLC 355

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           ++  + +A ++  K+ +   + + +SYN + +G+C  K+ ++A+E L+ MV RG  P++ 
Sbjct: 356 RKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIV 415

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN +L    + G++E+A     ++  + C   ++TY T++ G    G+  +A  + D M
Sbjct: 416 TYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEM 475

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
               + P   TY++++  L ++  V+ AI  F E    G  PN+ T+N ++ GLC + + 
Sbjct: 476 RAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQT 535

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           +RA++F+  M +  C+PN  +Y ILI      G  +  LEL  ++
Sbjct: 536 DRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNEL 580



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 136/295 (46%), Gaps = 4/295 (1%)

Query: 63  PSLHWTPQLVDQ-IIKRLWNHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDY 119
           PS    P ++   II R      + +    +L+       SPS  +F+  I+   R    
Sbjct: 301 PSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLL 360

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
                ++ +M      P   ++  +   +    K DRA++    M   GC   + ++NT+
Sbjct: 361 GRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTM 420

Query: 180 LDLLCKEKKVEKAYNLFKVFRGKFKADV-ISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           L  LCK+ KVE A  +      K  + V I+YN + +G     +T KA+++L EM  + L
Sbjct: 421 LTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDL 480

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
            P+  TY+ ++ G  R G+++EA +FF E ++     + VT+ +I+ G     +  RA +
Sbjct: 481 KPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAID 540

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
               M+N G  P+  +Y  +I+ L  +   + A+ +  E+  KG M  S+   V 
Sbjct: 541 FLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGLMKKSSAEQVA 595


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 102/352 (28%), Positives = 176/352 (50%), Gaps = 4/352 (1%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           Y   W L   MK+    P   T+  +      +G    A+ +F  M   G   +  ++N 
Sbjct: 336 YEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNA 395

Query: 179 ILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           ++++L + ++++ A+ +  +  R     ++++YN +  G+C++    KA+ V+  M+ RG
Sbjct: 396 LINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRG 455

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
            + NL TYN ++KGY  +G    A R    M+   C+ D  +YT ++ GF  + +++ A 
Sbjct: 456 HSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAF 515

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
            +F+ MV+ G+ P+  TY A+I   CK + ++ A  + E M   G  PN  TYNV+I GL
Sbjct: 516 GLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGL 575

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
                   A E    M ++   PNV TY  +I   C  G     LE+F KM    CLPNL
Sbjct: 576 TKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNL 635

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
            TY+ LI ++    K ++   A  L  E+   G +P + T+ +++   ++ G
Sbjct: 636 LTYSSLIRALGQEGKVEE---AENLFAELERHGLIPDEITYVKMIEAYIMSG 684



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/361 (28%), Positives = 162/361 (44%), Gaps = 39/361 (10%)

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKR 222
           M   G + +L  +N +++ LCK+  V  A  + K VF  +   D  +Y  +  G C    
Sbjct: 206 MLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHD 265

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI------------------------ 258
            + AL+V  +M   G  PN  TY+ ++ G   +G++                        
Sbjct: 266 LDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTG 325

Query: 259 -----------EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
                      E+AWR F++MK + CE +V TYT ++ G  V G +K A  +F  M   G
Sbjct: 326 PIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDG 385

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           V P+  TYNA+I +L +   ++ A +V   M   G  PN  TYN +I+G C  G+ ++A+
Sbjct: 386 VFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAM 445

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
             +  M       N+ TYN +I+ +CD+G     L + + M  G C P+  +Y  LI   
Sbjct: 446 LVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGF 505

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
               K +    A  L  EMVD G  P + T+  +++G         A  +L    R G  
Sbjct: 506 CKISKMES---AFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCR 562

Query: 488 P 488
           P
Sbjct: 563 P 563



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 161/343 (46%), Gaps = 2/343 (0%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           A+  F+ +S    + ++  +++  I++    R  +  + +++ M      P   T+  + 
Sbjct: 374 AIGLFHRMSRDGVFPNT-VTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMI 432

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFK 204
           + Y   G   +A+ +  +M + G   +L ++NTI+   C       A  +  + R G  K
Sbjct: 433 KGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCK 492

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
            D  SY  +  G+C + +   A  +  EMVD GL PN  TY  ++ GY +  +++ A   
Sbjct: 493 PDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSL 552

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
              MK+  C  +V TY  ++HG         A  +   M+  G+ P+V TY AMI  LCK
Sbjct: 553 LEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCK 612

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
             S   A+ +F +M+ +G +PN  TY+ +IR L   G++E A      ++     P+  T
Sbjct: 613 NGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEIT 672

Query: 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           Y  +I  +  +G++E       +M    C P L TY +LI  +
Sbjct: 673 YVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL 715



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 155/334 (46%), Gaps = 5/334 (1%)

Query: 161 FLSM-HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWC 218
           FL M  + G R  L +++ +L  L +        + + ++     + +++ YN + N  C
Sbjct: 167 FLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALC 226

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
                  A  ++K++ +  ++P+  TY  ++ G+ R   ++ A + F +M K  CE + V
Sbjct: 227 KDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTV 286

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TY+T+++G    G +  A ++   M+  G+LP+  T    I  LC     E+A  +F +M
Sbjct: 287 TYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDM 346

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
             KG  PN  TY  +I GLC +G ++ A+    RM  D   PN  TYN LI    +   I
Sbjct: 347 KNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRI 406

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           +    +   MG   C PN+ TYN +I    +       ++   ++  M+ RG      T+
Sbjct: 407 KYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAML---VMNNMLQRGHSANLVTY 463

Query: 459 NRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQFK 492
           N ++ G    GN   A  IL L    G  P ++ 
Sbjct: 464 NTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWS 497



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 119/315 (37%), Gaps = 60/315 (19%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+  + +     G    A+++F  M E GC  +L ++++++  L +E KVE+A NL
Sbjct: 598 PNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENL 657

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG--- 251
           F ++ R     D I+Y  +   + +  +   A   L  M+  G  P L TY +++KG   
Sbjct: 658 FAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKN 717

Query: 252 -YFRAGQIEEAWRFFLE----------------MKKRKCEID----VVTYTTIVHGFGVV 290
            Y  A Q   A    +                 M  +  E+D    V     +V      
Sbjct: 718 EYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTA 777

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAM-------------------------------- 318
           G    A  +   M++ G+ P    YN++                                
Sbjct: 778 GRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGY 837

Query: 319 ---IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
              I  LC+    + A + FE M+ + + P+     V+I GL   G  +  +EF+  M+ 
Sbjct: 838 KELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMET 897

Query: 376 DECEPNVQTYNILIR 390
               P+   Y IL R
Sbjct: 898 RRYMPSFHIYTILAR 912


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 102/352 (28%), Positives = 176/352 (50%), Gaps = 4/352 (1%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           Y   W L   MK+    P   T+  +      +G    A+ +F  M   G   +  ++N 
Sbjct: 336 YEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNA 395

Query: 179 ILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           ++++L + ++++ A+ +  +  R     ++++YN +  G+C++    KA+ V+  M+ RG
Sbjct: 396 LINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRG 455

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
            + NL TYN ++KGY  +G    A R    M+   C+ D  +YT ++ GF  + +++ A 
Sbjct: 456 HSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAF 515

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
            +F+ MV+ G+ P+  TY A+I   CK + ++ A  + E M   G  PN  TYNV+I GL
Sbjct: 516 GLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGL 575

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
                   A E    M ++   PNV TY  +I   C  G     LE+F KM    CLPNL
Sbjct: 576 TKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNL 635

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
            TY+ LI ++    K ++   A  L  E+   G +P + T+ +++   ++ G
Sbjct: 636 LTYSSLIRALGQEGKVEE---AENLFAELERHGLIPDEITYVKMIEAYIMSG 684



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/361 (28%), Positives = 162/361 (44%), Gaps = 39/361 (10%)

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKR 222
           M   G + +L  +N +++ LCK+  V  A  + K VF  +   D  +Y  +  G C    
Sbjct: 206 MLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHD 265

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI------------------------ 258
            + AL+V  +M   G  PN  TY+ ++ G   +G++                        
Sbjct: 266 LDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTG 325

Query: 259 -----------EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
                      E+AWR F++MK + CE +V TYT ++ G  V G +K A  +F  M   G
Sbjct: 326 PIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDG 385

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           V P+  TYNA+I +L +   ++ A +V   M   G  PN  TYN +I+G C  G+ ++A+
Sbjct: 386 VFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAM 445

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
             +  M       N+ TYN +I+ +CD+G     L + + M  G C P+  +Y  LI   
Sbjct: 446 LVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGF 505

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
               K +    A  L  EMVD G  P + T+  +++G         A  +L    R G  
Sbjct: 506 CKISKMES---AFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCR 562

Query: 488 P 488
           P
Sbjct: 563 P 563



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 152/324 (46%), Gaps = 1/324 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  I++    R  +  + +++ M      P   T+  + + Y   G   +A+ +  +M
Sbjct: 392 TYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNM 451

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRT 223
            + G   +L ++NTI+   C       A  +  + R G  K D  SY  +  G+C + + 
Sbjct: 452 LQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKM 511

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
             A  +  EMVD GL PN  TY  ++ GY +  +++ A      MK+  C  +V TY  +
Sbjct: 512 ESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVL 571

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +HG         A  +   M+  G+ P+V TY AMI  LCK  S   A+ +F +M+ +G 
Sbjct: 572 IHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGC 631

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
           +PN  TY+ +IR L   G++E A      ++     P+  TY  +I  +  +G++E    
Sbjct: 632 LPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFN 691

Query: 404 LFEKMGSGVCLPNLDTYNILISSM 427
              +M    C P L TY +LI  +
Sbjct: 692 FLGRMIKAGCQPTLWTYGVLIKGL 715



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 155/334 (46%), Gaps = 5/334 (1%)

Query: 161 FLSM-HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWC 218
           FL M  + G R  L +++ +L  L +        + + ++     + +++ YN + N  C
Sbjct: 167 FLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALC 226

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
                  A  ++K++ +  ++P+  TY  ++ G+ R   ++ A + F +M K  CE + V
Sbjct: 227 KDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTV 286

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TY+T+++G    G +  A ++   M+  G+LP+  T    I  LC     E+A  +F +M
Sbjct: 287 TYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDM 346

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
             KG  PN  TY  +I GLC +G ++ A+    RM  D   PN  TYN LI    +   I
Sbjct: 347 KNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRI 406

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           +    +   MG   C PN+ TYN +I    +       ++   ++  M+ RG      T+
Sbjct: 407 KYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAML---VMNNMLQRGHSANLVTY 463

Query: 459 NRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQFK 492
           N ++ G    GN   A  IL L    G  P ++ 
Sbjct: 464 NTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWS 497



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 119/315 (37%), Gaps = 60/315 (19%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+  + +     G    A+++F  M E GC  +L ++++++  L +E KVE+A NL
Sbjct: 598 PNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENL 657

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG--- 251
           F ++ R     D I+Y  +   + +  +   A   L  M+  G  P L TY +++KG   
Sbjct: 658 FAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKN 717

Query: 252 -YFRAGQIEEAWRFFLE----------------MKKRKCEID----VVTYTTIVHGFGVV 290
            Y  A Q   A    +                 M  +  E+D    V     +V      
Sbjct: 718 EYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTA 777

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAM-------------------------------- 318
           G    A  +   M++ G+ P    YN++                                
Sbjct: 778 GRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGY 837

Query: 319 ---IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
              I  LC+    + A + FE M+ + + P+     V+I GL   G  +  +EF+  M+ 
Sbjct: 838 KELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMET 897

Query: 376 DECEPNVQTYNILIR 390
               P+   Y IL R
Sbjct: 898 RRYMPSFHIYTILAR 912


>gi|15237345|ref|NP_197146.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170213|sp|Q9FFE3.1|PP388_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16420, mitochondrial; Flags: Precursor
 gi|9759124|dbj|BAB09609.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|332004907|gb|AED92290.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 535

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 119/427 (27%), Positives = 206/427 (48%), Gaps = 10/427 (2%)

Query: 69  PQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHR 128
           P+ +  +I +  N  L    F      HP + H+  ++   +   +R R +  V +L+  
Sbjct: 49  PKRLVSMITQQQNIDLALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMAD 108

Query: 129 MKSLSLGPT---QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185
           +++ S  P    +  F  +   Y  AG+ + +++IFL + + G ++S+ S NT+L++L +
Sbjct: 109 LRN-SYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQ 167

Query: 186 EKKVEKAYNLFKVFRGKF--KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            ++ +  + +FK  +  F    ++ + N++    C       A +VL E+   GL PNL 
Sbjct: 168 NQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLV 227

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY  +L GY   G +E A R   EM  R    D  TYT ++ G+  +G    A  V D M
Sbjct: 228 TYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDM 287

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
               + P+  TY  MI+ LCK+     A  +F+EM+ + +MP+S+    VI  LC   ++
Sbjct: 288 EKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKV 347

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A     +M  + C P+    + LI + C  G +    +LF++   G  +P+L TYN L
Sbjct: 348 DEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFEKG-SIPSLLTYNTL 406

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I+ M    +  +L  AG+L  +M +R   P  FT+N ++ GL   GN      +L     
Sbjct: 407 IAGMC---EKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLE 463

Query: 484 CGRLPRQ 490
            G  P +
Sbjct: 464 IGCFPNK 470



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 138/288 (47%), Gaps = 2/288 (0%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177
           D  + + ++  + S+ L P   T+  I   YV+ G  + A ++   M + G      ++ 
Sbjct: 206 DIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYT 265

Query: 178 TILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
            ++D  CK  +  +A  +   + + + + + ++Y V+    C  K++ +A  +  EM++R
Sbjct: 266 VLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLER 325

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
              P+ +    V+       +++EA   + +M K  C  D    +T++H     G +  A
Sbjct: 326 SFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEA 385

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
           R +FD    G + PS+ TYN +I  +C+K  +  A  ++++M  +   PN+ TYNV+I G
Sbjct: 386 RKLFDEFEKGSI-PSLLTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEG 444

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           L   G ++  +  +  M +  C PN  T+ IL       G+ E  +++
Sbjct: 445 LSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAMKI 492



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 147/316 (46%), Gaps = 7/316 (2%)

Query: 90  FNILSYHPTYAHSPSSFDHAIDLAARLR--DYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
           + +L   P+    P+   +   L   +   D  +   ++  M      P   T+ ++ + 
Sbjct: 211 YKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDG 270

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKAD 206
           Y   G+   A  +   M ++    +  ++  ++  LCKEKK  +A N+F ++    F  D
Sbjct: 271 YCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPD 330

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
                 + +  C   + ++A  + ++M+     P+    + ++    + G++ EA + F 
Sbjct: 331 SSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFD 390

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           E +K      ++TY T++ G    GE+  A  ++D M      P+  TYN +I+ L K  
Sbjct: 391 EFEKGSIP-SLLTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNG 449

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
           +V+  + V EEM+  G  PN TT+ ++  GL   G+ E A++ V  M     + + +++ 
Sbjct: 450 NVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAMKIVS-MAVMNGKVDKESWE 508

Query: 387 ILIRYFCDAGEIERGL 402
           + ++ F  AGE+++G+
Sbjct: 509 LFLKKF--AGELDKGV 522


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 106/375 (28%), Positives = 177/375 (47%), Gaps = 12/375 (3%)

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
           A R+ D R +      +  +   P   TF  +       G+   A+ +F  M   GC  S
Sbjct: 232 AGRIEDARRL------INGMPFPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPS 285

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLK 231
           + +++ +LD  CKE    +A  L    R K  + D+++YNV+ N  C     ++AL +L 
Sbjct: 286 VVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILS 345

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
            +   G  P+  TY  VLK    + + +E      EM    C  D VT+ TIV      G
Sbjct: 346 NLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQG 405

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
            + RA  V D M   G +  + TY++++  LC    V++A+ +   +   G  P++  Y 
Sbjct: 406 LVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYT 465

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
            V++GLC T + ERA E +  M   +C P+  T+N ++   C  G ++R + + E+M   
Sbjct: 466 TVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSEN 525

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
            C P++ TYN +I  +      DD   A +LL ++   G  P   TFN +L GL  +   
Sbjct: 526 GCSPDIVTYNCIIDGLCNESCIDD---AMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRW 582

Query: 472 GLAKEILR--LQSRC 484
             A++++   ++S C
Sbjct: 583 EDAEQLMANMMRSNC 597



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 185/380 (48%), Gaps = 6/380 (1%)

Query: 102 SPSSFDHAIDLAARLRD--YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           SPS   ++I L A  ++  YR    L+  M++    P   T+ ++     + G  D A+ 
Sbjct: 283 SPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALN 342

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWC 218
           I  ++  HGC+    ++  +L  LC  ++ ++   L  ++       D +++N I    C
Sbjct: 343 ILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLC 402

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
                ++A+EV+  M + G   ++ TY+ +L G    G++++A      +K   C+ D +
Sbjct: 403 QQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTI 462

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
            YTT++ G     + +RA  +   M+     P   T+N ++  LC+K  V+ AI V E+M
Sbjct: 463 AYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQM 522

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
              G  P+  TYN +I GLC+   ++ A+E +  ++   C+P++ T+N L++  C     
Sbjct: 523 SENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRW 582

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           E   +L   M    C P+  T+N +I+S+  +     L  A + L  M + G +P   T+
Sbjct: 583 EDAEQLMANMMRSNCPPDELTFNTVITSLCQKGL---LTQAIETLKIMAENGCVPNSSTY 639

Query: 459 NRVLNGLLLIGNQGLAKEIL 478
           + V++ LL  G    A E+L
Sbjct: 640 SIVVDALLKAGKAQAALELL 659



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 155/333 (46%), Gaps = 6/333 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M      P + TF  +       G  DRA+++   M E+GC   + ++N I+D LC
Sbjct: 483 LMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLC 542

Query: 185 KEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            E  ++ A  L    +    K D++++N +  G C V R   A +++  M+     P+  
Sbjct: 543 NESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDEL 602

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           T+N V+    + G + +A      M +  C  +  TY+ +V      G+ + A  +  GM
Sbjct: 603 TFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGM 662

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            NG   P + TYN +I  L K   +E A+ +   MV  G  P++TTY  +  G+C     
Sbjct: 663 TNG--TPDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGT 720

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           +RA+  + R++D    P+   YN ++  FC     +  ++ F  M S  C+P+  TY IL
Sbjct: 721 DRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTYVIL 780

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
           + ++      D+   A +LL  +   G + +K 
Sbjct: 781 LEALAYGGLLDE---AKRLLASLCSLGVLDKKL 810



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 152/304 (50%), Gaps = 13/304 (4%)

Query: 183 LCKEKKVEKAYNLFKVFR---GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
           L +  ++++A  LF       G+    V+  N++    C   R + A  V   +   G +
Sbjct: 160 LVQRGEIDEALVLFDSMASGGGRNCPPVVPCNILIKRLCSDGRVSDAERVFAAL---GPS 216

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
             + TYN ++ GY RAG+IE+A R    M       D  T+  ++    V G I  A  V
Sbjct: 217 ATVVTYNTMVNGYCRAGRIEDARRLINGMPFPP---DTFTFNPLIRALCVRGRIPDALAV 273

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
           FD M++ G  PSV TY+ ++   CK+     A+ + +EM  KG  P+  TYNV+I  +C+
Sbjct: 274 FDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCN 333

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419
            G+++ AL  +  +    C+P+  TY  +++  C +   +   EL  +M S  C P+  T
Sbjct: 334 EGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVT 393

Query: 420 YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL- 478
           +N +++S+  +   D  +   +++  M + G +    T++ +L+GL  +G    A E+L 
Sbjct: 394 FNTIVTSLCQQGLVDRAI---EVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLS 450

Query: 479 RLQS 482
           RL+S
Sbjct: 451 RLKS 454


>gi|297853022|ref|XP_002894392.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297340234|gb|EFH70651.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 525

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 115/443 (25%), Positives = 207/443 (46%), Gaps = 5/443 (1%)

Query: 34  PPAAADPAALASLILTSTDPRT-LTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNI 92
           PP+      ++ ++    +P+  L  TL   S   +  LV+Q++KR  N    A  FF  
Sbjct: 32  PPSPELVNEISRVLSDHRNPKDDLEHTLAAYSPRVSSNLVEQVLKRCKNLGFPAHRFFLW 91

Query: 93  LSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLS-LGPTQKTFAIIAERYVSA 151
               P + HS  S+   +++    + +  +W  +   +  +    T K F I+   Y  A
Sbjct: 92  AKRIPDFEHSLESYHILVEILGCSKQFALLWDFLIEAREYNYFEITSKVFWIVFRAYSRA 151

Query: 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISY 210
                A + F  M E G +  ++  + +L  LC  K V  A   F   +G        +Y
Sbjct: 152 NLPSEASRAFNRMVEFGIKPCVDDLDQLLHSLCDRKHVNHAQEFFDKAKGFGIVPSAKTY 211

Query: 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
           +++  GW  ++  + A +V  EM++     +L  YN +L    ++G ++ A++ F EM  
Sbjct: 212 SILVRGWARIRDASGARKVFDEMLENNCVVDLLAYNALLDALCKSGDVDGAYKMFQEMGN 271

Query: 271 RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
              + D  ++   +H +    ++  A  V D M    ++P+V T+N +I+ LCK + V++
Sbjct: 272 LGLKPDAYSFAIFIHSYCDASDVHSAYQVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDD 331

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           A L+ +EM+ KG  P++ TYN ++   C   E+ RA + + RM   +C P+  TYN++++
Sbjct: 332 AYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLK 391

Query: 391 YFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450
                G  +R  E++E M      P + TY ++I  + VRKK   L  A +    M+D G
Sbjct: 392 LLIRIGRFDRVTEIWEGMSERKFYPTVATYTVMIHGL-VRKKG-KLEEACRYFEMMIDEG 449

Query: 451 FMPRKFTFNRVLNGLLLIGNQGL 473
             P   T   + N L+  G   +
Sbjct: 450 IPPYSTTVEMLRNRLVGWGQMDV 472



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 124/284 (43%), Gaps = 37/284 (13%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           + K   + P+ KT++I+   +     A  A K+F  M E+ C   L ++N +LD LCK  
Sbjct: 198 KAKGFGIVPSAKTYSILVRGWARIRDASGARKVFDEMLENNCVVDLLAYNALLDALCKSG 257

Query: 188 KVEKAYNLFK---------------VF---------------------RGKFKADVISYN 211
            V+ AY +F+               +F                     R     +V ++N
Sbjct: 258 DVDGAYKMFQEMGNLGLKPDAYSFAIFIHSYCDASDVHSAYQVLDRMKRYDLVPNVYTFN 317

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
            I    C  ++ + A  +L EM+ +G NP+  TYN ++  +    ++  A +    M + 
Sbjct: 318 HIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRT 377

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC-KKDSVEN 330
           KC  D  TY  ++     +G   R   +++GM      P+VATY  MI  L  KK  +E 
Sbjct: 378 KCLPDRHTYNMVLKLLIRIGRFDRVTEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEE 437

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           A   FE M+ +G  P STT  ++   L   G+M+      G+M+
Sbjct: 438 ACRYFEMMIDEGIPPYSTTVEMLRNRLVGWGQMDVVDVLAGKME 481



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 138/316 (43%), Gaps = 19/316 (6%)

Query: 171 QSLNSFNTILDLLCKEKKVE---------KAYNLFKVFRGKFKADVISYNVIANGWCLVK 221
            SL S++ ++++L   K+           + YN F++    F        ++   +    
Sbjct: 100 HSLESYHILVEILGCSKQFALLWDFLIEAREYNYFEITSKVFW-------IVFRAYSRAN 152

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
             ++A      MV+ G+ P +   + +L        +  A  FF + K         TY+
Sbjct: 153 LPSEASRAFNRMVEFGIKPCVDDLDQLLHSLCDRKHVNHAQEFFDKAKGFGIVPSAKTYS 212

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
            +V G+  + +   AR VFD M+    +  +  YNA++  LCK   V+ A  +F+EM   
Sbjct: 213 ILVRGWARIRDASGARKVFDEMLENNCVVDLLAYNALLDALCKSGDVDGAYKMFQEMGNL 272

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
           G  P++ ++ + I   C   ++  A + + RMK  +  PNV T+N +I+  C   +++  
Sbjct: 273 GLKPDAYSFAIFIHSYCDASDVHSAYQVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDA 332

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
             L ++M      P+  TYN   S M       ++  A KLL  M     +P + T+N V
Sbjct: 333 YLLLDEMIQKGANPDTWTYN---SIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMV 389

Query: 462 LNGLLLIGNQGLAKEI 477
           L  L+ IG      EI
Sbjct: 390 LKLLIRIGRFDRVTEI 405


>gi|297840249|ref|XP_002888006.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333847|gb|EFH64265.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 485

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 112/412 (27%), Positives = 196/412 (47%), Gaps = 12/412 (2%)

Query: 56  LTQTLHCPSLHWTPQLVDQIIK-RLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAA 114
           + Q+   PS+    +L+  I K + ++  +   H   I        H   +++  I+   
Sbjct: 60  MIQSRPLPSIVEFSKLLSNIAKSKNYDLVISLFHNMEICGI----GHDLYTYNIVINCLC 115

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           R   +    ++V +M      P   T + +   +    +   AV +   M E  C+  + 
Sbjct: 116 RCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKMEEMRCKLDVV 175

Query: 175 SFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
            +NTI+D  CK   V  A  LF ++ R   +AD ++YN +  G C   R + A  ++++M
Sbjct: 176 IYNTIIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDM 235

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           V R + PN+ T+  ++  + R G+  EA +F+ EM +R  + DV TY +++HG  + G++
Sbjct: 236 VMRDIVPNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQV 295

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
             A+ + D MV  G  P V TYN +I   CK   V+    +  EM  +G + ++ T+N +
Sbjct: 296 DEAKQILDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTI 355

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           I+G    G  + A E   RM      PN++TY+IL+   C    +E+ L LFE M     
Sbjct: 356 IQGYFQAGRPDAAQEIFSRMGS---RPNIRTYSILLYGLCYNWRVEKALVLFESMQKSEM 412

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
             ++ TYNI+I  M +    +D   A  L   +  +G  P   T+  +++G 
Sbjct: 413 ELDITTYNIVIHGMCMIGNVED---AWDLFCSLSFKGLEPDVVTYTTMISGF 461



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 161/335 (48%), Gaps = 7/335 (2%)

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVI 213
           D A+ +F +M +     S+  F+ +L  + K K  +   +LF          D+ +YN++
Sbjct: 51  DEAIDLFCNMIQSRPLPSIVEFSKLLSNIAKSKNYDLVISLFHNMEICGIGHDLYTYNIV 110

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
            N  C   R   AL V+ +M+  G  P++ T + ++ G+ +  ++  A     +M++ +C
Sbjct: 111 INCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKMEEMRC 170

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
           ++DVV Y TI+ GF   G +  A  +F  M   GV     TYN+++  LC      +A  
Sbjct: 171 KLDVVIYNTIIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAAR 230

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           +  +MV +  +PN  T+  +I      G+   A +F   M     +P+V TYN +I   C
Sbjct: 231 LMRDMVMRDIVPNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLC 290

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
             G+++   ++ + M +  C P++ TYN LI+     K+ D+     KL+ EM  RG + 
Sbjct: 291 MHGQVDEAKQILDLMVTKGCFPDVVTYNTLINGFCKTKRVDE---GTKLVREMSQRGLVV 347

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
              TFN ++ G    G    A+EI    SR G  P
Sbjct: 348 DTVTFNTIIQGYFQAGRPDAAQEIF---SRMGSRP 379



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 143/292 (48%), Gaps = 4/292 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L  RM+   +     T+  +      +G+   A ++   M       ++ +F  +++   
Sbjct: 196 LFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDMVMRDIVPNVITFTALINAFV 255

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           +E K  +A   ++ + R     DV +YN + +G C+  + ++A ++L  MV +G  P++ 
Sbjct: 256 REGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQILDLMVTKGCFPDVV 315

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN ++ G+ +  +++E  +   EM +R   +D VT+ TI+ G+   G    A+ +F  M
Sbjct: 316 TYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQGYFQAGRPDAAQEIFSRM 375

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G  P++ TY+ ++  LC    VE A+++FE M       + TTYN+VI G+C  G +
Sbjct: 376 ---GSRPNIRTYSILLYGLCYNWRVEKALVLFESMQKSEMELDITTYNIVIHGMCMIGNV 432

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
           E A +    +     EP+V TY  +I  FC     ++   L+ KM     LP
Sbjct: 433 EDAWDLFCSLSFKGLEPDVVTYTTMISGFCRKRLWDKADFLYRKMQEDGLLP 484



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 116/267 (43%), Gaps = 38/267 (14%)

Query: 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
            ++EA   F  M + +    +V ++ ++             ++F  M   G+   + TYN
Sbjct: 49  NLDEAIDLFCNMIQSRPLPSIVEFSKLLSNIAKSKNYDLVISLFHNMEICGIGHDLYTYN 108

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
            +I  LC+      A+ V  +M+  GY P+  T + +I G C    +  A++ V +M++ 
Sbjct: 109 IVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKMEEM 168

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMG---------------SGVC-------- 413
            C+ +V  YN +I  FC  G +   L LF +M                +G+C        
Sbjct: 169 RCKLDVVIYNTIIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDA 228

Query: 414 ------------LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
                       +PN+ T+  LI++ FVR+     L A K   EM+ R   P  FT+N +
Sbjct: 229 ARLMRDMVMRDIVPNVITFTALINA-FVREGK--FLEAKKFYEEMIRRCIDPDVFTYNSM 285

Query: 462 LNGLLLIGNQGLAKEILRLQSRCGRLP 488
           ++GL + G    AK+IL L    G  P
Sbjct: 286 IHGLCMHGQVDEAKQILDLMVTKGCFP 312


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 102/352 (28%), Positives = 176/352 (50%), Gaps = 4/352 (1%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           Y   W L   MK+    P   T+  +      +G    A+ +F  M   G   +  ++N 
Sbjct: 336 YEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNA 395

Query: 179 ILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           ++++L + ++++ A+ +  +  R     ++++YN +  G+C++    KA+ V+  M+ RG
Sbjct: 396 LINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRG 455

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
            + NL TYN ++KGY  +G    A R    M+   C+ D  +YT ++ GF  + +++ A 
Sbjct: 456 HSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAF 515

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
            +F+ MV+ G+ P+  TY A+I   CK + ++ A  + E M   G  PN  TYNV+I GL
Sbjct: 516 GLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGL 575

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
                   A E    M ++   PNV TY  +I   C  G     LE+F KM    CLPNL
Sbjct: 576 TKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNL 635

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
            TY+ LI ++    K ++   A  L  E+   G +P + T+ +++   ++ G
Sbjct: 636 LTYSSLIRALGQEGKVEE---AENLFAELERHGLIPDEITYVKMIEAYIMSG 684



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/361 (28%), Positives = 162/361 (44%), Gaps = 39/361 (10%)

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKR 222
           M   G + +L  +N +++ LCK+  V  A  + K VF  +   D  +Y  +  G C    
Sbjct: 206 MLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHD 265

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI------------------------ 258
            + AL+V  +M   G  PN  TY+ ++ G   +G++                        
Sbjct: 266 LDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTG 325

Query: 259 -----------EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
                      E+AWR F++MK + CE +V TYT ++ G  V G +K A  +F  M   G
Sbjct: 326 PIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDG 385

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           V P+  TYNA+I +L +   ++ A +V   M   G  PN  TYN +I+G C  G+ ++A+
Sbjct: 386 VFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAM 445

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
             +  M       N+ TYN +I+ +CD+G     L + + M  G C P+  +Y  LI   
Sbjct: 446 LVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGF 505

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
               K +    A  L  EMVD G  P + T+  +++G         A  +L    R G  
Sbjct: 506 CKISKMES---AFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCR 562

Query: 488 P 488
           P
Sbjct: 563 P 563



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 161/343 (46%), Gaps = 2/343 (0%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           A+  F+ +S    + ++  +++  I++    R  +  + +++ M      P   T+  + 
Sbjct: 374 AIGLFHRMSRDGVFPNT-VTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMI 432

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFK 204
           + Y   G   +A+ +  +M + G   +L ++NTI+   C       A  +  + R G  K
Sbjct: 433 KGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCK 492

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
            D  SY  +  G+C + +   A  +  EMVD GL PN  TY  ++ GY +  +++ A   
Sbjct: 493 PDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSL 552

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
              MK+  C  +V TY  ++HG         A  +   M+  G+ P+V TY AMI  LCK
Sbjct: 553 LEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCK 612

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
             S   A+ +F +M+ +G +PN  TY+ +IR L   G++E A      ++     P+  T
Sbjct: 613 NGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEIT 672

Query: 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           Y  +I  +  +G++E       +M    C P L TY +LI  +
Sbjct: 673 YVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL 715



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 155/334 (46%), Gaps = 5/334 (1%)

Query: 161 FLSM-HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWC 218
           FL M  + G R  L +++ +L  L +        + + ++     + +++ YN + N  C
Sbjct: 167 FLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALC 226

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
                  A  ++K++ +  ++P+  TY  ++ G+ R   ++ A + F +M K  CE + V
Sbjct: 227 KDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTV 286

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TY+T+++G    G +  A ++   M+  G+LP+  T    I  LC     E+A  +F +M
Sbjct: 287 TYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDM 346

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
             KG  PN  TY  +I GLC +G ++ A+    RM  D   PN  TYN LI    +   I
Sbjct: 347 KNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRI 406

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           +    +   MG   C PN+ TYN +I    +       ++   ++  M+ RG      T+
Sbjct: 407 KYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAML---VMNNMLQRGHSANLVTY 463

Query: 459 NRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQFK 492
           N ++ G    GN   A  IL L    G  P ++ 
Sbjct: 464 NTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWS 497



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 119/315 (37%), Gaps = 60/315 (19%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+  + +     G    A+++F  M E GC  +L ++++++  L +E KVE+A NL
Sbjct: 598 PNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENL 657

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG--- 251
           F ++ R     D I+Y  +   + +  +   A   L  M+  G  P L TY +++KG   
Sbjct: 658 FAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKN 717

Query: 252 -YFRAGQIEEAWRFFLE----------------MKKRKCEID----VVTYTTIVHGFGVV 290
            Y  A Q   A    +                 M  +  E+D    V     +V      
Sbjct: 718 EYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTA 777

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAM-------------------------------- 318
           G    A  +   M++ G+ P    YN++                                
Sbjct: 778 GRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGY 837

Query: 319 ---IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
              I  LC+    + A + FE M+ + + P+     V+I GL   G  +  +EF+  M+ 
Sbjct: 838 KELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMET 897

Query: 376 DECEPNVQTYNILIR 390
               P+   Y IL R
Sbjct: 898 RRYMPSFHIYTILAR 912


>gi|9857539|gb|AAG00894.1|AC064879_12 Hypothetical protein [Arabidopsis thaliana]
          Length = 490

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 122/448 (27%), Positives = 223/448 (49%), Gaps = 27/448 (6%)

Query: 27  TTSPAPLPPAAADPAALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRL-WNHA-- 83
           + +  P+     D   +  +I  S     L ++L    +H +  L+D+++KR+ ++H   
Sbjct: 28  SDAKVPVEEEGDDAETVFRMINGSNLQVELKESLSSSGIHLSKDLIDRVLKRVRFSHGNP 87

Query: 84  LKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLV--HRMKSLSLGPTQKTF 141
           ++ L F+   S    + HS  S D  + +  R R +  +W L+   + K  SL  + +T 
Sbjct: 88  IQTLEFYRYASAIRGFYHSSFSLDTMLYILGRNRKFDQIWELLIETKRKDRSL-ISPRTM 146

Query: 142 AIIAERYVSAGKADRAVKIFLSMH-------EHGCRQSLNSFNTILDLLCKEKKVEKAYN 194
            ++  R        + V+ F           +  C      FN +L  LC+EK +  A N
Sbjct: 147 QVVLGRVAKLCSVRQTVESFWKFKRLVPDFFDTAC------FNALLRTLCQEKSMTDARN 200

Query: 195 LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           ++   + +F+ D+ ++N++ +GW   K + +A    +EM  +GL P++ TYN ++  Y +
Sbjct: 201 VYHSLKHQFQPDLQTFNILLSGW---KSSEEAEAFFEEMKGKGLKPDVVTYNSLIDVYCK 257

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
             +IE+A++   +M++ +   DV+TYTT++ G G++G+  +AR V   M   G  P VA 
Sbjct: 258 DREIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQPDKAREVLKEMKEYGCYPDVAA 317

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YNA I+  C    + +A  + +EMV KG  PN+TTYN+  R L    ++ R+ E   RM 
Sbjct: 318 YNAAIRNFCIARRLGDADKLVDEMVKKGLSPNATTYNLFFRVLSLANDLGRSWELYVRML 377

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
            +EC PN Q+   LI+ F    +++  + L+E M     +    +Y+++   +       
Sbjct: 378 GNECLPNTQSCMFLIKMFKRHEKVDMAMRLWEDM----VVKGFGSYSLVSDVLLDLLCDL 433

Query: 435 -DLLVAGKLLIEMVDRGFMPRKFTFNRV 461
             +  A K L+EMV++G  P   +F R+
Sbjct: 434 AKVEEAEKCLLEMVEKGHRPSNVSFKRI 461



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 115/259 (44%), Gaps = 40/259 (15%)

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN-GGVLPS- 311
           R  + ++ W   +E K++  +  +++  T+    G V ++   R   +       ++P  
Sbjct: 119 RNRKFDQIWELLIETKRK--DRSLISPRTMQVVLGRVAKLCSVRQTVESFWKFKRLVPDF 176

Query: 312 --VATYNAMIQVLCKKDSVENAILVFEE-------------------------------M 338
              A +NA+++ LC++ S+ +A  V+                                 M
Sbjct: 177 FDTACFNALLRTLCQEKSMTDARNVYHSLKHQFQPDLQTFNILLSGWKSSEEAEAFFEEM 236

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
            GKG  P+  TYN +I   C   E+E+A + + +M+++E  P+V TY  +I      G+ 
Sbjct: 237 KGKGLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQP 296

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           ++  E+ ++M    C P++  YN  I +  + ++  D   A KL+ EMV +G  P   T+
Sbjct: 297 DKAREVLKEMKEYGCYPDVAAYNAAIRNFCIARRLGD---ADKLVDEMVKKGLSPNATTY 353

Query: 459 NRVLNGLLLIGNQGLAKEI 477
           N     L L  + G + E+
Sbjct: 354 NLFFRVLSLANDLGRSWEL 372


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 108/364 (29%), Positives = 186/364 (51%), Gaps = 5/364 (1%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            LV RM      P   T+  +       G+ D A+ +   M +      +  +NTI+D L
Sbjct: 201 ALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGL 260

Query: 184 CKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CK K ++ A++LF     K  K DV +YN + +  C   R + A  +L +M+++ +NP+L
Sbjct: 261 CKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDL 320

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRK-CEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
             +N ++  + + G++ EA + + EM K K C  DVV Y T++ GF     ++    VF 
Sbjct: 321 VFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFR 380

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M   G++ +  TY  +I    +    +NA +VF++MV  G  P+  TYN+++ GLC+ G
Sbjct: 381 EMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNG 440

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
            +E AL     M+  + + ++ TY  +I   C AG++E G +LF  +      PN+ TY 
Sbjct: 441 NVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYT 500

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481
            ++S  F RK   +   A  L +EM + G +P   T+N ++   L  G++  + E+++  
Sbjct: 501 TMMSG-FCRKGLKE--EADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEM 557

Query: 482 SRCG 485
             CG
Sbjct: 558 RSCG 561



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 163/372 (43%), Gaps = 40/372 (10%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P+   F+ +        K D  + +   M   G   +L +++  ++  C+  ++  A  +
Sbjct: 73  PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAI 132

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             K+ +  +   +++ N + NG+C   R ++A+ ++ +MV+ G  P+  T+  ++ G F+
Sbjct: 133 LGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQ 192

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
             +  EA      M  + C+ D+VTY  +++G    GE   A N+ + M  G +   V  
Sbjct: 193 HNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVI 252

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM- 373
           YN +I  LCK   +++A  +F +M  KG  P+  TYN +I  LC+ G    A   +  M 
Sbjct: 253 YNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDML 312

Query: 374 -----------------------------------KDDECEPNVQTYNILIRYFCDAGEI 398
                                              K   C P+V  YN LI+ FC    +
Sbjct: 313 EKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRV 372

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           E G+E+F +M     + N  TY  LI   F  +  D+   A  +  +MV  G  P   T+
Sbjct: 373 EEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDN---AQMVFKQMVSDGVHPDIMTY 429

Query: 459 NRVLNGLLLIGN 470
           N +L+GL   GN
Sbjct: 430 NILLDGLCNNGN 441



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 146/307 (47%), Gaps = 2/307 (0%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           ++  ID   + +     + L ++M++  + P   T+  +     + G+   A ++   M 
Sbjct: 253 YNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDML 312

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFK-ADVISYNVIANGWCLVKRT 223
           E      L  FN ++D   KE K+ +A  L+ ++ + K    DV++YN +  G+C  KR 
Sbjct: 313 EKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRV 372

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            + +EV +EM  RGL  N  TY  ++ G+F+A   + A   F +M       D++TY  +
Sbjct: 373 EEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNIL 432

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G    G ++ A  VF+ M    +   + TY  MI+ LCK   VE+   +F  +  KG 
Sbjct: 433 LDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGV 492

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN  TY  ++ G C  G  E A      MK+D   PN  TYN LIR     G+     E
Sbjct: 493 KPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAE 552

Query: 404 LFEKMGS 410
           L ++M S
Sbjct: 553 LIKEMRS 559



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 153/329 (46%), Gaps = 9/329 (2%)

Query: 71  LVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHA--IDLAARLRDYRTVWTLVHR 128
           ++D + K  + H   A   FN +    T    P  F +   I        +     L+  
Sbjct: 256 IIDGLCK--YKHMDDAFDLFNKME---TKGIKPDVFTYNPLISCLCNYGRWSDASRLLSD 310

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM-HEHGCRQSLNSFNTILDLLCKEK 187
           M   ++ P    F  + + +V  GK   A K++  M     C   + ++NT++   CK K
Sbjct: 311 MLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYK 370

Query: 188 KVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
           +VE+   +F+    +    + ++Y  + +G+   +  + A  V K+MV  G++P++ TYN
Sbjct: 371 RVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYN 430

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
           I+L G    G +E A   F  M+KR  ++D+VTYTT++      G+++   ++F  +   
Sbjct: 431 ILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLK 490

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           GV P+V TY  M+   C+K   E A  +F EM   G +PNS TYN +IR     G+   +
Sbjct: 491 GVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAAS 550

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDA 395
            E +  M+      +  T+ ++     D 
Sbjct: 551 AELIKEMRSCGFAGDASTFGLVTNMLHDG 579



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 118/257 (45%), Gaps = 3/257 (1%)

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
           + + A+ +  +MV     P++  ++ +L    +  + +       +M+      ++ TY+
Sbjct: 55  KLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 114

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
             ++ F    ++  A  +   M+  G  PS+ T N+++   C  + +  A+ + ++MV  
Sbjct: 115 IFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 174

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
           GY P++ T+  ++ GL    +   A+  V RM    C+P++ TY  +I   C  GE +  
Sbjct: 175 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLA 234

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
           L L  KM  G    ++  YN +I  +   K  DD   A  L  +M  +G  P  FT+N +
Sbjct: 235 LNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDD---AFDLFNKMETKGIKPDVFTYNPL 291

Query: 462 LNGLLLIGNQGLAKEIL 478
           ++ L   G    A  +L
Sbjct: 292 ISCLCNYGRWSDASRLL 308


>gi|15217756|ref|NP_171744.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806504|sp|Q9FZ19.2|PPR5_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g02420
 gi|332189307|gb|AEE27428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 491

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 122/448 (27%), Positives = 223/448 (49%), Gaps = 27/448 (6%)

Query: 27  TTSPAPLPPAAADPAALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRL-WNHA-- 83
           + +  P+     D   +  +I  S     L ++L    +H +  L+D+++KR+ ++H   
Sbjct: 29  SDAKVPVEEEGDDAETVFRMINGSNLQVELKESLSSSGIHLSKDLIDRVLKRVRFSHGNP 88

Query: 84  LKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLV--HRMKSLSLGPTQKTF 141
           ++ L F+   S    + HS  S D  + +  R R +  +W L+   + K  SL  + +T 
Sbjct: 89  IQTLEFYRYASAIRGFYHSSFSLDTMLYILGRNRKFDQIWELLIETKRKDRSL-ISPRTM 147

Query: 142 AIIAERYVSAGKADRAVKIFLSMH-------EHGCRQSLNSFNTILDLLCKEKKVEKAYN 194
            ++  R        + V+ F           +  C      FN +L  LC+EK +  A N
Sbjct: 148 QVVLGRVAKLCSVRQTVESFWKFKRLVPDFFDTAC------FNALLRTLCQEKSMTDARN 201

Query: 195 LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           ++   + +F+ D+ ++N++ +GW   K + +A    +EM  +GL P++ TYN ++  Y +
Sbjct: 202 VYHSLKHQFQPDLQTFNILLSGW---KSSEEAEAFFEEMKGKGLKPDVVTYNSLIDVYCK 258

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
             +IE+A++   +M++ +   DV+TYTT++ G G++G+  +AR V   M   G  P VA 
Sbjct: 259 DREIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQPDKAREVLKEMKEYGCYPDVAA 318

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YNA I+  C    + +A  + +EMV KG  PN+TTYN+  R L    ++ R+ E   RM 
Sbjct: 319 YNAAIRNFCIARRLGDADKLVDEMVKKGLSPNATTYNLFFRVLSLANDLGRSWELYVRML 378

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
            +EC PN Q+   LI+ F    +++  + L+E M     +    +Y+++   +       
Sbjct: 379 GNECLPNTQSCMFLIKMFKRHEKVDMAMRLWEDM----VVKGFGSYSLVSDVLLDLLCDL 434

Query: 435 -DLLVAGKLLIEMVDRGFMPRKFTFNRV 461
             +  A K L+EMV++G  P   +F R+
Sbjct: 435 AKVEEAEKCLLEMVEKGHRPSNVSFKRI 462



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 115/259 (44%), Gaps = 40/259 (15%)

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN-GGVLPS- 311
           R  + ++ W   +E K++  +  +++  T+    G V ++   R   +       ++P  
Sbjct: 120 RNRKFDQIWELLIETKRK--DRSLISPRTMQVVLGRVAKLCSVRQTVESFWKFKRLVPDF 177

Query: 312 --VATYNAMIQVLCKKDSVENAILVFEE-------------------------------M 338
              A +NA+++ LC++ S+ +A  V+                                 M
Sbjct: 178 FDTACFNALLRTLCQEKSMTDARNVYHSLKHQFQPDLQTFNILLSGWKSSEEAEAFFEEM 237

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
            GKG  P+  TYN +I   C   E+E+A + + +M+++E  P+V TY  +I      G+ 
Sbjct: 238 KGKGLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQP 297

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           ++  E+ ++M    C P++  YN  I +  + ++  D   A KL+ EMV +G  P   T+
Sbjct: 298 DKAREVLKEMKEYGCYPDVAAYNAAIRNFCIARRLGD---ADKLVDEMVKKGLSPNATTY 354

Query: 459 NRVLNGLLLIGNQGLAKEI 477
           N     L L  + G + E+
Sbjct: 355 NLFFRVLSLANDLGRSWEL 373


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 105/345 (30%), Positives = 170/345 (49%), Gaps = 6/345 (1%)

Query: 80  WNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQK 139
           ++ A K LH   +      +     ++   I+   +L        L+ +M   +  P   
Sbjct: 61  FDEAYKLLHTMRL----KRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYA-PPDAL 115

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KV 198
           T+  I ER     + D A+     M   G +     +N +L  LC+E+KVE+A  LF K+
Sbjct: 116 TYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKM 175

Query: 199 FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
            + +   +V++YN + NG C   R   A E+ KEM  +G  P   +YN ++ G+ +   +
Sbjct: 176 VKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDL 235

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
             A   F +M +  C  +VVTYTT++ G    G+++ A  V DGMV  GV P+VATY+ +
Sbjct: 236 VAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCL 295

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           I   CK   V+ A  + E+MV +G  P   TYN+++  LC   ++E A +    M    C
Sbjct: 296 IDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRC 355

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
            P V TYN L+R  C   +++    L+ +M +  C P+  TY+ L
Sbjct: 356 HPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTL 400



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 169/331 (51%), Gaps = 5/331 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   TF  +A+ +  AG+ ++  +++  M E G     + +  ++  LCK    ++AY L
Sbjct: 8   PGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKL 67

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
               R K FK   I+Y+ I N  C + R  +A E++++M  R   P+  TY  +++   +
Sbjct: 68  LHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMA-RYAPPDALTYGPIVERLCK 126

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
             +I++A     EM  R  + D   Y  ++ G     +++ AR +F+ MV   + P+V T
Sbjct: 127 TKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVT 186

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN +I  LCK   +E A  +F+EM GKGY+P   +YN +I G C   ++  A +   +M 
Sbjct: 187 YNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMV 246

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
              C PNV TY  LI     +G+++   E+ + M      PN+ TY+ LI      ++ D
Sbjct: 247 RSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVD 306

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           +   A KLL +MV +G  P   T+N +LN L
Sbjct: 307 E---AHKLLEQMVTQGIAPTVVTYNILLNSL 334



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/325 (32%), Positives = 165/325 (50%), Gaps = 3/325 (0%)

Query: 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR 200
           + I+       G  D A K+  +M     ++   +++TI++ LCK  +VE+A  L +   
Sbjct: 48  YGILISCLCKVGNFDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMA 107

Query: 201 GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
                D ++Y  I    C  KR + AL  ++EM  RG+ P+   YN VL G  +  ++EE
Sbjct: 108 RYAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEE 167

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
           A   F +M K++   +VVTY T+++G      I+ A  +F  M   G +P+  +YN +I 
Sbjct: 168 ARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLID 227

Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
             CKK  +  A  VF++MV    +PN  TY  +I GL  +G+++ A E +  M      P
Sbjct: 228 GFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTP 287

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAG 440
           NV TY+ LI  FC    ++   +L E+M +    P + TYNIL++S+    ++D L  A 
Sbjct: 288 NVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLC---RADKLEDAF 344

Query: 441 KLLIEMVDRGFMPRKFTFNRVLNGL 465
           KL   M  R   P   T+N +L  L
Sbjct: 345 KLFRGMAQRRCHPTVVTYNTLLRAL 369



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/392 (28%), Positives = 188/392 (47%), Gaps = 7/392 (1%)

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           Y    S +   I    ++ ++   + L+H M+          ++ I        + + A 
Sbjct: 41  YTLRASGYGILISCLCKVGNFDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEAR 100

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANG 216
           ++   M  +    +L ++  I++ LCK K+++ A    +    RG  K D   YN + +G
Sbjct: 101 ELIEKMARYAPPDAL-TYGPIVERLCKTKRIDDALATVEEMATRG-IKPDAFIYNFVLSG 158

Query: 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID 276
            C  ++  +A  + ++MV + +NPN+ TYN ++ G  +A +IE A+  F EM  +     
Sbjct: 159 LCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPT 218

Query: 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE 336
            V+Y T++ GF    ++  A++VFD MV    +P+V TY  +I  L K   V+ A  V +
Sbjct: 219 EVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLD 278

Query: 337 EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
            MV KG  PN  TY+ +I G C    ++ A + + +M      P V TYNIL+   C A 
Sbjct: 279 GMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRAD 338

Query: 397 EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
           ++E   +LF  M    C P + TYN L+ ++   K+ D    A +L  EM+ +G  P   
Sbjct: 339 KLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDG---AHRLYAEMIAKGCPPDAI 395

Query: 457 TFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           T++ +  GL   G    A+E++       R P
Sbjct: 396 TYDTLAWGLTRAGKVHEAQELMEKMKLTKRNP 427



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 138/280 (49%), Gaps = 4/280 (1%)

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           ++N +A+G+    R  +  EV + MV+ G     + Y I++    + G  +EA++    M
Sbjct: 12  TFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKLLHTM 71

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
           + ++ +   + Y+TI++    +  ++ AR + + M      P   TY  +++ LCK   +
Sbjct: 72  RLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAP-PDALTYGPIVERLCKTKRI 130

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           ++A+   EEM  +G  P++  YN V+ GLC   ++E A     +M      PNV TYN L
Sbjct: 131 DDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTL 190

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           I   C A  IE   ELF++M     +P   +YN LI   F +KK  DL+ A  +  +MV 
Sbjct: 191 INGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDG-FCKKK--DLVAAKDVFDKMVR 247

Query: 449 RGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
              +P   T+  +++GL   G    A E+L    + G  P
Sbjct: 248 SNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTP 287



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 96/213 (45%), Gaps = 6/213 (2%)

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           T+ T+  GF   G +++ + V+ GMV  G     + Y  +I  LCK  + + A  +   M
Sbjct: 12  TFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKLLHTM 71

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
             K +   +  Y+ +I  LC    +E A E + +M      P+  TY  ++   C    I
Sbjct: 72  RLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMA-RYAPPDALTYGPIVERLCKTKRI 130

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE-MVDRGFMPRKFT 457
           +  L   E+M +    P+   YN ++S +   +K ++     +LL E MV +   P   T
Sbjct: 131 DDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEE----ARLLFEKMVKQRINPNVVT 186

Query: 458 FNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
           +N ++NGL        A E+ +  +  G +P +
Sbjct: 187 YNTLINGLCKAWRIETAYELFKEMAGKGYVPTE 219


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 100/319 (31%), Positives = 168/319 (52%), Gaps = 4/319 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+  I       G+   A  +F  M E GC+  + +++TI+D LCK+++V +A ++
Sbjct: 8   PDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDI 67

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F   + K    ++ +YN +  G C   R  +A  +L EM+   + PN+ T+++++  + +
Sbjct: 68  FSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCK 127

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G + EA      M +   E +VVTY+++++G+ +  E+  AR +FD M+  G  P V +
Sbjct: 128 EGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFS 187

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN +I   CK   +  A  +F EM+ +G  P+  +YN +I GLC  G +  A +    M 
Sbjct: 188 YNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNML 247

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
            +   P++ TY+IL+  FC  G + +   LF  M S    PN+  YNILI +M    KS 
Sbjct: 248 TNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMC---KSR 304

Query: 435 DLLVAGKLLIEMVDRGFMP 453
           +L  A KL  E+  +G  P
Sbjct: 305 NLKEARKLFSELFVQGLQP 323



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 130/256 (50%), Gaps = 3/256 (1%)

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           MV RG  P++ TY  ++ G  + G+   A   F +M +  C+ DVVTY+TI+        
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           +  A ++F  M   G+ P++ TYN++IQ LC       A  +  EM+    MPN  T+++
Sbjct: 61  VNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSL 120

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           +I   C  G +  A   +  M +   EPNV TY+ L+  +    E+    +LF+ M +  
Sbjct: 121 LINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKG 180

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
           C P++ +YNILI+     K+  +   A +L  EM+ +G  P   ++N +++GL  +G   
Sbjct: 181 CKPDVFSYNILINGYCKAKRIGE---AKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLR 237

Query: 473 LAKEILRLQSRCGRLP 488
            A ++ +     G LP
Sbjct: 238 EAHDLFKNMLTNGNLP 253



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 138/283 (48%), Gaps = 7/283 (2%)

Query: 198 VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
           V RG ++ DV +Y  I NG C +  T  A  + K+M + G  P++ TY+ ++    +  +
Sbjct: 2   VARG-YQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           + EA   F  MK +    ++ TY +++ G       + A  + + M++  ++P++ T++ 
Sbjct: 61  VNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSL 120

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           +I + CK+ +V  A  V + M   G  PN  TY+ ++ G     E+  A +    M    
Sbjct: 121 LINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKG 180

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
           C+P+V +YNILI  +C A  I    +LF +M      P++ +YN LI  +    +   L 
Sbjct: 181 CKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGR---LR 237

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
            A  L   M+  G +P   T++ +L+G      QG   +  RL
Sbjct: 238 EAHDLFKNMLTNGNLPDLCTYSILLDGFC---KQGYLAKAFRL 277


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 121/430 (28%), Positives = 205/430 (47%), Gaps = 45/430 (10%)

Query: 90  FNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWT---LVHRMKSLSLGPTQKTFAIIAE 146
            +I++   +Y   P    +   L A +R  ++V     +   M    + P   T+ I+  
Sbjct: 152 LSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIR 211

Query: 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKA 205
            + +AG  +  +  F  M  +GC  ++ ++NTI+D  CK +K+ +A+ L ++   K    
Sbjct: 212 GFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNP 271

Query: 206 DVISYNVIANGWC---LVKRTNKALEVLK------------------------------- 231
           ++ISYNV+ NG C    +K T++ LE +                                
Sbjct: 272 NLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLH 331

Query: 232 -EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
            EMV  GL+PN+ TY  ++    +AG +  A  F  +M+ R    +  TYTT++ GF   
Sbjct: 332 AEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQ 391

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           G +K+A  +   MV  G  P++ TYNA+I   C    +E+A  + +EM+ +G++P+  +Y
Sbjct: 392 GFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSY 451

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           + +I G C   E+E+A +    M      P+V TY+ LI+  C    +    +LF++M S
Sbjct: 452 STIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLS 511

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
               P+  TY  LI++  +     DL  A +L  EM+ +GF P   T+N ++NG      
Sbjct: 512 LGLPPDEVTYTSLINAYCIE---GDLDKALRLHDEMIQKGFSPDIVTYNVLINGF---NK 565

Query: 471 QGLAKEILRL 480
           Q   KE  RL
Sbjct: 566 QSRTKEAKRL 575



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 190/366 (51%), Gaps = 5/366 (1%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADR-AVKI 160
           S + FD  +   AR+       ++V+  KS    P   ++  I +  +   ++ + A  I
Sbjct: 131 SSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGI 190

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCL 219
           F  M E G   ++ ++N ++   C    +E     F ++ R     +V++YN I + +C 
Sbjct: 191 FKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCK 250

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
           +++  +A ++L+ M  +GLNPNL +YN+V+ G  R GQ++E      EM KR+   D VT
Sbjct: 251 LRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVT 310

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           + T+++G+  VG   +A  +   MV  G+ P+V TY  +I  +CK  ++  A+   ++M 
Sbjct: 311 FNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMR 370

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            +G  PN  TY  +I G    G +++A + +  M ++   P + TYN LI   C  G +E
Sbjct: 371 DRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRME 430

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
               L ++M     +P++ +Y+ +IS  F R +  +L  A +L +EMV +G  P   T++
Sbjct: 431 DASGLLQEMIERGFIPDVVSYSTIISG-FCRNQ--ELEKAFQLKVEMVAKGISPDVATYS 487

Query: 460 RVLNGL 465
            ++ GL
Sbjct: 488 SLIQGL 493



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 118/433 (27%), Positives = 203/433 (46%), Gaps = 36/433 (8%)

Query: 64  SLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDH-----AIDLAARLRD 118
           S H+TPQ    ++ +    +   L F +       +A S   F       A+ +  R + 
Sbjct: 42  SSHFTPQASSNLLLKSQFDSSLVLKFLD-------WARSQQFFSFQCKCLALHILTRYKL 94

Query: 119 YRTVWTLVHRMKSLSLGPT-QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177
           Y+T  +L   +   ++  T +  F  +   Y                  + C+ S   F+
Sbjct: 95  YKTAQSLAEEVVVNTVDETGEDLFQCLKNSY------------------YQCKSSSAVFD 136

Query: 178 TILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALE-VLKEMVD 235
            ++    +   + KA ++  + +   F   V+SYN I +     K++ K  E + KEMV+
Sbjct: 137 LVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVE 196

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
            G++PN+ TYNI+++G+  AG +E    FF EM++  C  +VVTY TI+  +  + +I  
Sbjct: 197 SGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGE 256

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
           A  +   M   G+ P++ +YN +I  LC++  ++    + EEM  + Y+P+  T+N +I 
Sbjct: 257 AFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLIN 316

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
           G C+ G   +AL     M  +   PNV TY  LI   C AG + R +E  ++M      P
Sbjct: 317 GYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHP 376

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
           N  TY  LI       +   L  A +++ EMV+ GF P   T+N ++NG  ++G    A 
Sbjct: 377 NGRTYTTLIDGF---SQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDAS 433

Query: 476 EILRLQSRCGRLP 488
            +L+     G +P
Sbjct: 434 GLLQEMIERGFIP 446



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 111/434 (25%), Positives = 203/434 (46%), Gaps = 22/434 (5%)

Query: 63  PSLHWTPQLVDQIIK-RLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRT 121
           P++     ++D   K R    A K L    +   +P       S++  I+   R    + 
Sbjct: 236 PNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLI----SYNVVINGLCREGQMKE 291

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
              ++  M      P + TF  +   Y + G   +A+ +   M ++G   ++ ++ T+++
Sbjct: 292 TSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLIN 351

Query: 182 LLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
            +CK   + +A       R +    +  +Y  + +G+       +A +++KEMV+ G  P
Sbjct: 352 SMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTP 411

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
            + TYN ++ G+   G++E+A     EM +R    DVV+Y+TI+ GF    E+++A  + 
Sbjct: 412 TIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLK 471

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
             MV  G+ P VATY+++IQ LCK+  +     +F+EM+  G  P+  TY  +I   C  
Sbjct: 472 VEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIE 531

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
           G++++AL     M      P++ TYN+LI  F      +    L  K+     +PN  TY
Sbjct: 532 GDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITY 591

Query: 421 NILISSM-FVRKKSDDLLVAG-----------KLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
           N LI +   +  KS   L+ G           ++L  M+ +G+   +  +N +++G   +
Sbjct: 592 NTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKV 651

Query: 469 GN----QGLAKEIL 478
           GN      L KE+L
Sbjct: 652 GNIEKAYNLYKEML 665



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/389 (22%), Positives = 169/389 (43%), Gaps = 51/389 (13%)

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           Y     +F+  I+    + ++     L   M    L P   T+  +      AG  +RA+
Sbjct: 304 YVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAM 363

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGW 217
           +    M + G   +  ++ T++D   ++  +++AY + K +    F   +I+YN + NG 
Sbjct: 364 EFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGH 423

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           C++ R   A  +L+EM++RG  P++ +Y+ ++ G+ R  ++E+A++  +EM  +    DV
Sbjct: 424 CILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDV 483

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
            TY++++ G      +    ++F  M++ G+ P   TY ++I   C +  ++ A+ + +E
Sbjct: 484 ATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDE 543

Query: 338 MVGKGYMPNSTTYNVVI------------------------------------------- 354
           M+ KG+ P+  TYNV+I                                           
Sbjct: 544 MIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEF 603

Query: 355 -------RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
                  +G C  G M  A   +  M     + N + YN++I      G IE+   L+++
Sbjct: 604 KSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKE 663

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDL 436
           M      P+  T   L  S++   K  +L
Sbjct: 664 MLHSGFAPHSVTIMALAKSLYHEGKEVEL 692



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 130/264 (49%), Gaps = 19/264 (7%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M      P   +++ I   +    + ++A ++ + M   G    + ++++++  LC
Sbjct: 435 LLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLC 494

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K++++ +  +LF+ +       D ++Y  + N +C+    +KAL +  EM+ +G +P++ 
Sbjct: 495 KQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIV 554

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH---------------GFG 288
           TYN+++ G+ +  + +EA R  L++   +   + +TY T++                GF 
Sbjct: 555 TYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFC 614

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
           + G +  A  V + M+  G   +   YN +I    K  ++E A  +++EM+  G+ P+S 
Sbjct: 615 MKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSV 674

Query: 349 TYNVVIRGLCHTG---EMERALEF 369
           T   + + L H G   E+ + L++
Sbjct: 675 TIMALAKSLYHEGKEVELNQLLDY 698


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 119/410 (29%), Positives = 191/410 (46%), Gaps = 26/410 (6%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII------AERYVSAGKAD 155
           +PS F+  +      +DY   + L++RM +    P    + I        E+  S    D
Sbjct: 176 NPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLD 235

Query: 156 RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIA 214
            A KI+  M    C  +  +       LC   K +KA+ L K + R  F  D  +Y+ + 
Sbjct: 236 LAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVI 295

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
              C   +  KA  + +EM   G+ P++ TY I++  + +AG IE+A   F EM+   C 
Sbjct: 296 TFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCS 355

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
             VVTYT ++H +    ++ +A ++F  MV+ G  P+  TY A++  LCK  ++  A  V
Sbjct: 356 PTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEV 415

Query: 335 FEEMVGKG----------------YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           + +++G                    PN  TY  ++ GLC   +++ A E +  M    C
Sbjct: 416 YAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGC 475

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
           EPN   Y+ LI  FC AG+I+   E+F +M     LP++ TY  LI  MF   K   L +
Sbjct: 476 EPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMF---KDGRLDL 532

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           A K+L +M+     P   T+  +++GL  IG    A ++L L    G  P
Sbjct: 533 AMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSP 582



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 177/368 (48%), Gaps = 21/368 (5%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           S++   I            + L   MK + + P   T+ I+ + +  AG  ++A  +F  
Sbjct: 289 STYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEE 348

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKR 222
           M   GC  ++ ++  ++    K K+V +A ++F ++     + + ++Y  + +G C    
Sbjct: 349 MRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGN 408

Query: 223 TNKALEVLKEMV---------------DR-GLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
            +KA EV  +++               DR  L PN+ TY  ++ G  +A +++ A     
Sbjct: 409 ISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLD 468

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
            M    CE + + Y  ++ GF   G+I  A+ VF  M   G LPSV TY ++I  + K  
Sbjct: 469 AMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDG 528

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            ++ A+ V  +M+     PN  TY  +I GLC  GE E+AL+ +  M++  C PNV TY 
Sbjct: 529 RLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYT 588

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            LI     AG+I+  L+LF +M    C PN  TY +LI+ +     +  LL   +LL+  
Sbjct: 589 ALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLC----AAGLLDKARLLLGE 644

Query: 447 VDRGFMPR 454
           + + + P+
Sbjct: 645 MKQTYWPK 652



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/418 (26%), Positives = 183/418 (43%), Gaps = 61/418 (14%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           +    + +HRM+  S  P   T+  +   ++   +     +I   M   GC  + + FN+
Sbjct: 123 FDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNS 182

Query: 179 ILDLLCKEKKVEKAYNL---------------FKVFRG------------------KFKA 205
           ++   C EK    AY L               + +F G                  K   
Sbjct: 183 LVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYG 242

Query: 206 DVISYNVIANG---------WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256
           ++++ N + N           C V + +KA +++KEM+ +G  P+ +TY+ V+     A 
Sbjct: 243 EMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHAT 302

Query: 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
           ++E+A+  F EMK      DV TYT ++  F   G I++A+ +F+ M + G  P+V TY 
Sbjct: 303 KVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYT 362

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM--- 373
           A+I    K   V  A  +F  MV  G  PN  TY  ++ GLC  G + +A E   ++   
Sbjct: 363 ALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGT 422

Query: 374 ---KDDE----CE------PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
               D +    CE      PNV TY  L+   C A +++   EL + M S  C PN   Y
Sbjct: 423 SDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVY 482

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           + LI       K D    A ++ ++M   G++P   T+  +++ +   G   LA ++L
Sbjct: 483 DALIDGFCKAGKIDS---AQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVL 537



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 112/432 (25%), Positives = 183/432 (42%), Gaps = 93/432 (21%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           W L   M+S+   PT  T+  +   Y+ A +  +A  IF  M + GCR +  ++  ++D 
Sbjct: 344 W-LFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDG 402

Query: 183 LCKEKKVEKAYNLFKVF-----------------RGKFKADVISYNVIANGWCLVKRTNK 225
           LCK   + KA+ ++                    R     +V++Y  + +G C   + + 
Sbjct: 403 LCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDH 462

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK--------------- 270
           A E+L  M+  G  PN   Y+ ++ G+ +AG+I+ A   FL+M K               
Sbjct: 463 AHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLID 522

Query: 271 --------------------RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
                                 C  +VVTYT ++ G   +GE ++A  +   M   G  P
Sbjct: 523 RMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSP 582

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           +V TY A+I  L K   ++ ++ +F +M  KG  PN  TY V+I  LC  G +++A   +
Sbjct: 583 NVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLL 642

Query: 371 GRMKD----------------------------DECE-----PNVQTYNILIRYFCDAGE 397
           G MK                             +E E     P    Y +LI  F  AG 
Sbjct: 643 GEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGR 702

Query: 398 IERGLELFEKM---GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
           +E  +EL ++M    S V   N D Y  LI ++ +  + ++   A +L  EM  RGF+P 
Sbjct: 703 LEIAMELHKEMMEVPSSVKTDN-DMYASLIQALCLASQVEE---AFRLYSEMTRRGFVPE 758

Query: 455 KFTFNRVLNGLL 466
              F  ++ GL+
Sbjct: 759 LSVFVCLIKGLV 770



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 98/390 (25%), Positives = 161/390 (41%), Gaps = 46/390 (11%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           +K     P++ T+  + +   SAG+ D   ++   M E G      +       LCKE +
Sbjct: 31  LKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGR 90

Query: 189 VEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
              A ++ +  R  FK D +    + +G       ++A+  L  M      PN+ TY  +
Sbjct: 91  WADALDMIE--REDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTL 148

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           L G+ +  Q+    R    M    C  +   + ++VH +    +   A  + + M   G 
Sbjct: 149 LSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGC 208

Query: 309 LPSVATYNAMIQVLCKKDSV---------------------------------------- 328
            P    YN  I  +C ++ +                                        
Sbjct: 209 PPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGK 268

Query: 329 -ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
            + A  + +EM+ KG++P+++TY+ VI  LCH  ++E+A      MK     P+V TY I
Sbjct: 269 FDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTI 328

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           LI  FC AG IE+   LFE+M S  C P + TY  LI +     K+  +  A  +   MV
Sbjct: 329 LIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYL---KAKQVPQANDIFHRMV 385

Query: 448 DRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
           D G  P   T+  +++GL   GN   A E+
Sbjct: 386 DAGCRPNDVTYGALVDGLCKAGNISKAFEV 415



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 150/347 (43%), Gaps = 47/347 (13%)

Query: 63  PSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSS--FDHAIDLAARLRDYR 120
           P++     LVD + K     A K  H   +L    +    P+   +D  ID   +     
Sbjct: 442 PNVVTYGALVDGLCK-----AHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKID 496

Query: 121 TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180
           +   +  +M      P+  T+  + +R    G+ D A+K+   M +  C  ++ ++  ++
Sbjct: 497 SAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMI 556

Query: 181 DLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
           D LC+  + EKA  L  +   K    +V++Y  + +G     + + +L++  +M  +G +
Sbjct: 557 DGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCS 616

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR---------KCEI--------------- 275
           PN  TY +++     AG +++A     EMK+          +C I               
Sbjct: 617 PNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILE 676

Query: 276 DVVTYTTI----VHG-----FGVVGEIKRARNVFDGMVNGGVLPSVAT----YNAMIQVL 322
           ++ +Y T+    V+G     F   G ++ A  +   M+   V  SV T    Y ++IQ L
Sbjct: 677 EMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMME--VPSSVKTDNDMYASLIQAL 734

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           C    VE A  ++ EM  +G++P  + +  +I+GL    + + AL+ 
Sbjct: 735 CLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQL 781



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 6/188 (3%)

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           D + + G  PS  TYNA++QVL     V+    V +EM   G+  +  T       LC  
Sbjct: 29  DPLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKE 88

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
           G    AL+ + R +D + +  + T+  +I    +A   +  +    +M    C+PN+ TY
Sbjct: 89  GRWADALDMIER-EDFKLDTVLCTH--MISGLMEASYFDEAMSFLHRMRCNSCIPNVVTY 145

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
             L+S  F++KK   L    +++  M+  G  P    FN +++      +   A ++L  
Sbjct: 146 RTLLSG-FLKKKQ--LGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNR 202

Query: 481 QSRCGRLP 488
            + CG  P
Sbjct: 203 MTTCGCPP 210


>gi|302816541|ref|XP_002989949.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
 gi|300142260|gb|EFJ08962.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
          Length = 447

 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 111/375 (29%), Positives = 186/375 (49%), Gaps = 24/375 (6%)

Query: 121 TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180
           +   L   M++    PT  +  I+   +  AG   RA++ F  M   G    L S++ +L
Sbjct: 78  SALKLFREMQAGPFLPTSASHNILLRGFFMAG---RAIEFFKEMKASGVEPDLESYHILL 134

Query: 181 DLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
             L    ++ +A+ LF         D+++YNV+ +G+C + +T +A  ++KE++  G  P
Sbjct: 135 SALSDSGRMAEAHALFSAM--TCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEP 192

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           N+ TY+I++  Y +  ++EEAW  F++M +  C  + VT+ T++ GF   G ++ A  +F
Sbjct: 193 NVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLF 252

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKK-DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
             M   G   ++ TYN +I  LCKK   V  A+ +F ++ G G  P   TYN +I+G   
Sbjct: 253 AEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFS- 311

Query: 360 TGEMERA---LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
               ERA   L  +  M  + C+P+V TYN LI   C A  +E    LF  M    C PN
Sbjct: 312 ----ERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFNGM---ACAPN 364

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKE 476
           + T+N LI  +  +KK ++          ++DR   P   TFN ++      G    A+E
Sbjct: 365 VTTFNFLIRGLCAQKKVEEAR-------NILDRMTAPDMTTFNTIILAFCKAGAMHDARE 417

Query: 477 ILRLQSRCGRLPRQF 491
           +++   + G  P  +
Sbjct: 418 VMKDMLKHGFYPNTY 432



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 169/334 (50%), Gaps = 13/334 (3%)

Query: 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
             P   T+ ++   +   G+  +AV +F  M   G   + ++ NT+L  LC+  ++  A 
Sbjct: 21  FAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSAL 80

Query: 194 NLFKVFR-GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
            LF+  + G F     S+N++  G+ +  R   A+E  KEM   G+ P+L +Y+I+L   
Sbjct: 81  KLFREMQAGPFLPTSASHNILLRGFFMAGR---AIEFFKEMKASGVEPDLESYHILLSAL 137

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
             +G++ EA   F  M    C  D++TY  ++ G+  +G+   A+++   ++  G  P+V
Sbjct: 138 SDSGRMAEAHALFSAM---TCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNV 194

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            TY+ +I   CK D VE A  VF +M+    +PN+ T+N +I G C  G +E A++    
Sbjct: 195 FTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAE 254

Query: 373 MKDDECEPNVQTYNILIRYFCDA-GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
           M+   C+  + TYN LI   C   G +   ++LF K+      P + TYN LI   F  +
Sbjct: 255 MEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQG-FSER 313

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            +D L    +LL  M   G  P   T+N +++GL
Sbjct: 314 ANDGL----RLLCHMHAEGCKPDVITYNCLISGL 343



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 163/341 (47%), Gaps = 46/341 (13%)

Query: 103 PSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFL 162
           P+S  H I L       R +      MK+  + P  +++ I+      +G+   A  +F 
Sbjct: 93  PTSASHNILLRGFFMAGRAI-EFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFS 151

Query: 163 SMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVK 221
           +M    C   + ++N ++D  CK  +  +A +L K + +  ++ +V +Y++I N +C + 
Sbjct: 152 AMT---CSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLD 208

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
           +  +A EV  +M++    PN  T+N ++ G+ +AG +E+A + F EM+K  C+  +VTY 
Sbjct: 209 KVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYN 268

Query: 282 TIVHGFGVV-GEIKRARNVFDGMVNGGVLPSVATYNAMIQV------------------- 321
           T++       G +  A ++F+ +   G+ P++ TYN++IQ                    
Sbjct: 269 TLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFSERANDGLRLLCHMHAEG 328

Query: 322 --------------LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
                         LC  + VE+A  +F    G    PN TT+N +IRGLC   ++E A 
Sbjct: 329 CKPDVITYNCLISGLCSANRVEDAQRLFN---GMACAPNVTTFNFLIRGLCAQKKVEEAR 385

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
             + RM      P++ T+N +I  FC AG +    E+ + M
Sbjct: 386 NILDRMT----APDMTTFNTIILAFCKAGAMHDAREVMKDM 422



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 146/323 (45%), Gaps = 44/323 (13%)

Query: 187 KKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT- 244
           +K ++A  LFK V  G F  +  +YNV+  G+C   + ++A+ V  +M   GL PN +T 
Sbjct: 4   RKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTM 63

Query: 245 ----------------------------------YNIVLKGYFRAGQIEEAWRFFLEMKK 270
                                             +NI+L+G+F AG+   A  FF EMK 
Sbjct: 64  NTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGR---AIEFFKEMKA 120

Query: 271 RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
              E D+ +Y  ++      G +  A  +F  M      P + TYN ++   CK      
Sbjct: 121 SGVEPDLESYHILLSALSDSGRMAEAHALFSAMT---CSPDIMTYNVLMDGYCKIGQTYE 177

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           A  + +E++  GY PN  TY+++I   C   ++E A E   +M +  C PN  T+N LI 
Sbjct: 178 AQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIA 237

Query: 391 YFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450
            FC AG +E  ++LF +M    C   + TYN LI S+   KK   +  A  L  ++   G
Sbjct: 238 GFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLC--KKRGGVYTAVDLFNKLEGAG 295

Query: 451 FMPRKFTFNRVLNGLLLIGNQGL 473
             P   T+N ++ G     N GL
Sbjct: 296 LTPTIVTYNSLIQGFSERANDGL 318



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 131/262 (50%), Gaps = 13/262 (4%)

Query: 100 AHSPSSFDHAI--DLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRA 157
            + P+ F ++I  +   +L      W +  +M   +  P   TF  +   +  AG  + A
Sbjct: 189 GYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDA 248

Query: 158 VKIFLSMHEHGCRQSLNSFNTILDLLCKEK-KVEKAYNLFKVFRGK-FKADVISYNVIAN 215
           +K+F  M + GC+ ++ ++NT++D LCK++  V  A +LF    G      +++YN +  
Sbjct: 249 IKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQ 308

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
           G+   +R N  L +L  M   G  P++ TYN ++ G   A ++E+A R F  M    C  
Sbjct: 309 GF--SERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFNGM---ACAP 363

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
           +V T+  ++ G     +++ ARN+ D M      P + T+N +I   CK  ++ +A  V 
Sbjct: 364 NVTTFNFLIRGLCAQKKVEEARNILDRM----TAPDMTTFNTIILAFCKAGAMHDAREVM 419

Query: 336 EEMVGKGYMPNSTTYNVVIRGL 357
           ++M+  G+ PN+ T   +  G+
Sbjct: 420 KDMLKHGFYPNTYTTYALAHGI 441



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 124/252 (49%), Gaps = 13/252 (5%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T++II   Y    K + A ++F+ M E  C  +  +FNT++   CK   +E A  L
Sbjct: 192 PNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKL 251

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTN--KALEVLKEMVDRGLNPNLTTYNIVLKGY 252
           F ++ +   KA +++YN + +  C  KR     A+++  ++   GL P + TYN +++G+
Sbjct: 252 FAEMEKIGCKATIVTYNTLIDSLC-KKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGF 310

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
             + +  +  R    M    C+ DV+TY  ++ G      ++ A+ +F+GM      P+V
Sbjct: 311 --SERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFNGMA---CAPNV 365

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            T+N +I+ LC +  VE A  + + M      P+ TT+N +I   C  G M  A E +  
Sbjct: 366 TTFNFLIRGLCAQKKVEEARNILDRMTA----PDMTTFNTIILAFCKAGAMHDAREVMKD 421

Query: 373 MKDDECEPNVQT 384
           M      PN  T
Sbjct: 422 MLKHGFYPNTYT 433



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 99/189 (52%), Gaps = 13/189 (6%)

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
           +A  +F  ++ G   P+  TYN +I+  CK   +  A+ VF +M   G +PN++T N ++
Sbjct: 8   QALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLL 67

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
            GLC  G+M  AL+    M+     P   ++NIL+R F  AG   R +E F++M +    
Sbjct: 68  LGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAG---RAIEFFKEMKASGVE 124

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN---- 470
           P+L++Y+IL+S++     S  +  A  L   M      P   T+N +++G   IG     
Sbjct: 125 PDLESYHILLSAL---SDSGRMAEAHALFSAMTCS---PDIMTYNVLMDGYCKIGQTYEA 178

Query: 471 QGLAKEILR 479
           Q L KEIL+
Sbjct: 179 QSLMKEILK 187


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 97/289 (33%), Positives = 151/289 (52%), Gaps = 1/289 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+  I ER     + D A+     M   G +     +N +L  LC+E+KVE+A  L
Sbjct: 7   PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLL 66

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F K+ + +   +V++YN + NG C   R   A E+ KEM  +G  P   +YN ++ G+ +
Sbjct: 67  FEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCK 126

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
              +  A   F +M +  C  +VVTYTT++ G    G+++ A  V DGMV  GV P+VAT
Sbjct: 127 KKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVAT 186

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y+ +I   CK   V+ A  + E+MV +G  P   TYN+++  LC   ++E A +    M 
Sbjct: 187 YSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMA 246

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
              C P V TYN L+R  C   +++    L+ +M +  C P+  TY+ L
Sbjct: 247 QRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTL 295



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 100/316 (31%), Positives = 162/316 (51%), Gaps = 6/316 (1%)

Query: 175 SFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
           ++  I++ LCK K+++ A    +    RG  K D   YN + +G C  ++  +A  + ++
Sbjct: 11  TYGPIVERLCKTKRIDDALATVEEMATRG-IKPDAFIYNFVLSGLCQEEKVEEARLLFEK 69

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           MV + +NPN+ TYN ++ G  +A +IE A+  F EM  +      V+Y T++ GF    +
Sbjct: 70  MVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKD 129

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           +  A++VFD MV    +P+V TY  +I  L K   V+ A  V + MV KG  PN  TY+ 
Sbjct: 130 LVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSC 189

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           +I G C    ++ A + + +M      P V TYNIL+   C A ++E   +LF  M    
Sbjct: 190 LIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRR 249

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
           C P + TYN L+ ++   K+ D    A +L  EM+ +G  P   T++ +  GL   G   
Sbjct: 250 CHPTVVTYNTLLRALCHHKQLDG---AHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVH 306

Query: 473 LAKEILRLQSRCGRLP 488
            A+E++       R P
Sbjct: 307 EAQELMEKMKLTKRNP 322



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 89/260 (34%), Positives = 136/260 (52%), Gaps = 3/260 (1%)

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           D ++Y  I    C  KR + AL  ++EM  RG+ P+   YN VL G  +  ++EEA   F
Sbjct: 8   DALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLF 67

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
            +M K++   +VVTY T+++G      I+ A  +F  M   G +P+  +YN +I   CKK
Sbjct: 68  EKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKK 127

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
             +  A  VF++MV    +PN  TY  +I GL  +G+++ A E +  M      PNV TY
Sbjct: 128 KDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATY 187

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           + LI  FC    ++   +L E+M +    P + TYNIL++S+    ++D L  A KL   
Sbjct: 188 SCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLC---RADKLEDAFKLFRG 244

Query: 446 MVDRGFMPRKFTFNRVLNGL 465
           M  R   P   T+N +L  L
Sbjct: 245 MAQRRCHPTVVTYNTLLRAL 264



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 140/284 (49%), Gaps = 1/284 (0%)

Query: 126 VHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185
           V  M +  + P    +  +        K + A  +F  M +     ++ ++NT+++ LCK
Sbjct: 32  VEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCK 91

Query: 186 EKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
             ++E AY LFK   GK +    +SYN + +G+C  K    A +V  +MV     PN+ T
Sbjct: 92  AWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVT 151

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           Y  ++ G  ++G+++ A      M K+    +V TY+ ++ GF  V  +  A  + + MV
Sbjct: 152 YTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMV 211

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
             G+ P+V TYN ++  LC+ D +E+A  +F  M  +   P   TYN ++R LCH  +++
Sbjct: 212 TQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLD 271

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            A      M    C P+  TY+ L      AG++    EL EKM
Sbjct: 272 GAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKM 315



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 124/247 (50%), Gaps = 5/247 (2%)

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           P+  TY  +++   +  +I++A     EM  R  + D   Y  ++ G     +++ AR +
Sbjct: 7   PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLL 66

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
           F+ MV   + P+V TYN +I  LCK   +E A  +F+EM GKGY+P   +YN +I G C 
Sbjct: 67  FEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCK 126

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419
             ++  A +   +M    C PNV TY  LI     +G+++   E+ + M      PN+ T
Sbjct: 127 KKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVAT 186

Query: 420 YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           Y+ LI      ++ D+   A KLL +MV +G  P   T+N +LN L        A ++ R
Sbjct: 187 YSCLIDGFCKVRRVDE---AHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFR 243

Query: 480 --LQSRC 484
              Q RC
Sbjct: 244 GMAQRRC 250



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 129/251 (51%), Gaps = 1/251 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L  +M    + P   T+  +      A + + A ++F  M   G   +  S+NT++D  C
Sbjct: 66  LFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFC 125

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K+K +  A ++F K+ R     +V++Y  + +G     +   A EVL  MV +G+ PN+ 
Sbjct: 126 KKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVA 185

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY+ ++ G+ +  +++EA +   +M  +     VVTY  +++      +++ A  +F GM
Sbjct: 186 TYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGM 245

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
                 P+V TYN +++ LC    ++ A  ++ EM+ KG  P++ TY+ +  GL   G++
Sbjct: 246 AQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKV 305

Query: 364 ERALEFVGRMK 374
             A E + +MK
Sbjct: 306 HEAQELMEKMK 316



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 100/207 (48%), Gaps = 3/207 (1%)

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           Y  +  S++  ID   + +D      +  +M   +  P   T+  + +    +GK   A 
Sbjct: 110 YVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAA 169

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANG 216
           ++   M + G   ++ +++ ++D  CK ++V++A+ L +  V +G     V++YN++ N 
Sbjct: 170 EVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQG-IAPTVVTYNILLNS 228

Query: 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID 276
            C   +   A ++ + M  R  +P + TYN +L+      Q++ A R + EM  + C  D
Sbjct: 229 LCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPD 288

Query: 277 VVTYTTIVHGFGVVGEIKRARNVFDGM 303
            +TY T+  G    G++  A+ + + M
Sbjct: 289 AITYDTLAWGLTRAGKVHEAQELMEKM 315



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 70/166 (42%), Gaps = 34/166 (20%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           +++   ID   ++R       L+ +M +  + PT  T+ I+      A K + A K+F  
Sbjct: 185 ATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRG 244

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRT 223
           M +  C  ++ ++NT+L  LC  K+++ A+ L+                           
Sbjct: 245 MAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLY--------------------------- 277

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
                   EM+ +G  P+  TY+ +  G  RAG++ EA     +MK
Sbjct: 278 -------AEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMK 316



 Score = 41.6 bits (96), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 5/112 (4%)

Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA 439
           P+  TY  ++   C    I+  L   E+M +    P+   YN ++S +   +K ++    
Sbjct: 7   PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEE---- 62

Query: 440 GKLLIE-MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
            +LL E MV +   P   T+N ++NGL        A E+ +  +  G +P +
Sbjct: 63  ARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTE 114


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 108/347 (31%), Positives = 187/347 (53%), Gaps = 7/347 (2%)

Query: 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK 197
           Q ++  +       G    A+K+   +     + ++  ++TI+D LCK + V +AY LF 
Sbjct: 164 QVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFS 223

Query: 198 VFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256
               K   ADV++Y+ +  G+C+  +  +A+ +L EMV + +NPN+ TYNI++    + G
Sbjct: 224 EMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEG 283

Query: 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
           +++EA      M K   + DV+TY+T++ G+ +V E+K+A++VF+ M   GV P V TY 
Sbjct: 284 KVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYT 343

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
            +I   CK   V+ A+ +F+EM  K  +P   TY+ +I GLC +G +    + +  M D 
Sbjct: 344 ILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDR 403

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
               NV TY+ LI   C  G ++R + LF KM      PN  T+ IL+  +    K   L
Sbjct: 404 GQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGLC---KGGRL 460

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
             A ++  +++ +G+    +T+N +++G      QGL +E L + S+
Sbjct: 461 KDAQEVFQDLLTKGYHLNVYTYNVMIDGHC---KQGLLEEALTMLSK 504



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 191/394 (48%), Gaps = 6/394 (1%)

Query: 101 HSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           H+P    F+  +D  A+++ Y T  +L HR++   + P   T  I+   +   G+     
Sbjct: 55  HTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGF 114

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGW 217
            +   + + G      + NT++  LC + +V+KA +   K+    F+ + +SY  + NG 
Sbjct: 115 SVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGV 174

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           C +  T  A+++L+++  R   PN+  Y+ ++    +   + EA+  F EM  +    DV
Sbjct: 175 CKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADV 234

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           VTY+T+++GF + G++K A  + + MV   + P+V TYN ++  LCK+  V+ A  V   
Sbjct: 235 VTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAV 294

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M+     P+  TY+ ++ G     E+++A      M      P+V TY ILI  FC    
Sbjct: 295 MLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKM 354

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           ++  L LF++M     +P + TY+ LI  +    KS  +     L+ EM DRG      T
Sbjct: 355 VDEALNLFKEMHQKNMVPGIVTYSSLIDGLC---KSGRIPYVWDLIDEMHDRGQPANVIT 411

Query: 458 FNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           ++ +++GL   G+   A  +       G  P  F
Sbjct: 412 YSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTF 445



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 172/340 (50%), Gaps = 1/340 (0%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID   + +     + L   M    +     T++ +   +   GK   A+ +   M     
Sbjct: 206 IDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTI 265

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKV-FRGKFKADVISYNVIANGWCLVKRTNKALE 228
             ++ ++N ++D LCKE KV++A ++  V  +   K DVI+Y+ + +G+ LV    KA  
Sbjct: 266 NPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQH 325

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           V   M   G+ P++ TY I++ G+ +   ++EA   F EM ++     +VTY++++ G  
Sbjct: 326 VFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLC 385

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G I    ++ D M + G   +V TY+++I  LCK   ++ AI +F +M  +G  PN+ 
Sbjct: 386 KSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTF 445

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           T+ +++ GLC  G ++ A E    +       NV TYN++I   C  G +E  L +  KM
Sbjct: 446 TFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALTMLSKM 505

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
               C+P+  T+ I+I ++F + ++   +   K + E+V+
Sbjct: 506 EDNGCIPDAVTFEIIIIALFKKDENGGNVGFDKKVWEIVE 545



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 133/261 (50%), Gaps = 3/261 (1%)

Query: 116  LRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS 175
            ++ Y T  +L HR++   + P   T  I+   +   G+      I   + + G      +
Sbjct: 939  MKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTIT 998

Query: 176  FNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
            F T+++ LC + +V KA +   K+    F+ + +SY  + NG C +  T  A+++L+++ 
Sbjct: 999  FTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKID 1058

Query: 235  DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
             R   P++  YN ++    +   + +A+  F EM  +    DVVTY T+++GF +VG++K
Sbjct: 1059 GRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLK 1118

Query: 295  RARNVFDGMVNGGVLPSVATYNAMIQVLCK--KDSVENAILVFEEMVGKGYMPNSTTYNV 352
             A  + + MV   + P+V TYN ++  LCK  KD ++ ++ +  +M   G   N+ T+ +
Sbjct: 1119 EAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEI 1178

Query: 353  VIRGLCHTGEMERALEFVGRM 373
            +I  L    E ++  + +  M
Sbjct: 1179 IISALFEKDENDKVEKLLHEM 1199



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 120/248 (48%), Gaps = 3/248 (1%)

Query: 220  VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
            +K  + A+ +   +  +G+ P+L T NI++  +   GQI   +    ++ KR    D +T
Sbjct: 939  MKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTIT 998

Query: 280  YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
            +TT+++G  + G++ +A +  D ++  G   +  +Y  +I  +CK      AI +  ++ 
Sbjct: 999  FTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKID 1058

Query: 340  GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            G+   P+   YN +I  LC    + +A      M       +V TYN LI  FC  G+++
Sbjct: 1059 GRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLK 1118

Query: 400  RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAG-KLLIEMVDRGFMPRKFTF 458
              + L  KM      PN+ TYNIL+ ++   K+  DLL     +L +M D G      TF
Sbjct: 1119 EAIGLLNKMVLKTINPNVRTYNILVDALC--KEGKDLLDESLSMLSKMEDNGCKANAVTF 1176

Query: 459  NRVLNGLL 466
              +++ L 
Sbjct: 1177 EIIISALF 1184



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 118/259 (45%), Gaps = 3/259 (1%)

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
           ++  + A+     M+     P +  +N +L  + +      A      ++ +  + D++T
Sbjct: 37  IQNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLIT 96

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
              +++ F  +G+I    +V   ++  G  P   T N +I+ LC K  V+ A+   ++++
Sbjct: 97  LNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLL 156

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            +G+  N  +Y  +I G+C  G+   A++ + ++     +PNV  Y+ +I   C    + 
Sbjct: 157 AQGFQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVS 216

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
               LF +M       ++ TY+ LI    +  K   L  A  LL EMV +   P  +T+N
Sbjct: 217 EAYGLFSEMTVKGISADVVTYSTLIYGFCIEGK---LKEAIGLLNEMVLKTINPNVYTYN 273

Query: 460 RVLNGLLLIGNQGLAKEIL 478
            +++ L   G    AK +L
Sbjct: 274 ILVDALCKEGKVKEAKSVL 292



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/114 (23%), Positives = 57/114 (50%), Gaps = 3/114 (2%)

Query: 366  ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
            A+    R++    +P++ T NILI  FC  G+I     +  K+      P+  T+  LI+
Sbjct: 945  AVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLIN 1004

Query: 426  SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
             + ++ + +  L       +++ +GF   + ++  ++NG+  IG+   A ++LR
Sbjct: 1005 GLCLKGQVNKAL---HFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLR 1055


>gi|449435037|ref|XP_004135302.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Cucumis sativus]
          Length = 519

 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 122/428 (28%), Positives = 207/428 (48%), Gaps = 8/428 (1%)

Query: 54  RTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLA 113
           ++L Q   C S+  +  LV ++++R  +    AL  F        + H+P  +D  ID  
Sbjct: 89  QSLLQDPVCNSIQLSHDLVYKLLQRFKDDWKSALGVFRWAESLSGFKHTPDLYDILIDTL 148

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            + +    +  ++  MK   L  T  T A    R+  AG+ + AV+IF  +  +G  ++ 
Sbjct: 149 GKTKQLVKMRGMLEEMKEARL-VTLDTVAKAMRRFAGAGQWENAVRIFDDLETYGLEKNT 207

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
            S N +LD LCKEKKVEKA  ++   +     +  ++N+  +GWC V + ++A   L+EM
Sbjct: 208 ESMNVLLDTLCKEKKVEKARQMYLELKSHIAPNANTFNMFIHGWCKVNKIDEAHWTLEEM 267

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
              G  P + +Y+ ++  Y       + +    EM  + C  +V+TYTTI+       E 
Sbjct: 268 KGYGHRPCVISYSTIILFYCHRCNFNKVYELLDEMDAQGCPANVITYTTIMCSLTKSEEF 327

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE-EMVGKGYMPNSTTYNV 352
           + A  + + M + G  P    YN +I  L +   V  AI VFE EM  K  +PN++TYN 
Sbjct: 328 EEALQIAERMKSAGYEPDTLFYNCLIHTLGRAGKVREAIHVFEVEMPSKSVLPNTSTYNS 387

Query: 353 VIRGLCHTGEMERALEFVGRM-KDDECEPNVQTYNILIRYFCDAGEIERGLE-LFEKMGS 410
           +I   C     E+A++ +  M K + C+P+VQTY  L++     G+ +  L  L ++M +
Sbjct: 388 MIAMYCRRAREEKAMKLLEEMQKSEHCKPDVQTYYPLLKSCFRTGKTDYDLSNLLDEMIN 447

Query: 411 GVCLP-NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
              L  ++ TY++LI  +    K D    A +L  +M+ +   PR  T   +L+      
Sbjct: 448 KHHLSLDISTYSLLIHGLCRANKCD---WAYQLFEKMISQDIKPRYLTCQLLLDEFKQKN 504

Query: 470 NQGLAKEI 477
             G+A  I
Sbjct: 505 MDGVADRI 512


>gi|357500061|ref|XP_003620319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495334|gb|AES76537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 496

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 95/271 (35%), Positives = 148/271 (54%), Gaps = 4/271 (1%)

Query: 183 LCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
            CKE KV++A N+F     K FK +V++Y+ + +G+CLVK  NKA  +   M   G+NP+
Sbjct: 229 FCKEGKVKEAKNVFAAMMKKGFKPNVVTYSSLMDGYCLVKEVNKAKSIFNNMAQGGVNPD 288

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           + +YNI++ G+ +    + A   F EM  RK   +VVTY +++ G    G+I  A  + D
Sbjct: 289 IQSYNILINGFCKIKMTDAAMNLFEEMHCRKIIPNVVTYNSLIDGLCKSGKISYALKLVD 348

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M + G  P + TY++++  LCK    + AI +  ++  +G  PN  TY ++I GLC  G
Sbjct: 349 EMHDRGQPPDIITYSSLLDALCKNHPGDKAIALLTKLKDQGLQPNMYTYTILINGLCKGG 408

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
             E A      +       NV TY ++I  FC+ G     L +  KM    C+PN  TY 
Sbjct: 409 RPEDAQNIFEDLLVKGYNINVNTYTVMIHVFCNNGMFGEALAMLSKMEENGCIPNAVTYE 468

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
           I+I S+F + ++D    A KLL+EM+ RG +
Sbjct: 469 IIIRSLFDKDENDK---AEKLLLEMITRGLL 496



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 134/264 (50%), Gaps = 8/264 (3%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            ++++ + V+     M      P   T++ + + Y    + ++A  IF +M + G    +
Sbjct: 233 GKVKEAKNVFA---AMMKKGFKPNVVTYSSLMDGYCLVKEVNKAKSIFNNMAQGGVNPDI 289

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKE 232
            S+N +++  CK K  + A NLF+     K   +V++YN + +G C   + + AL+++ E
Sbjct: 290 QSYNILINGFCKIKMTDAAMNLFEEMHCRKIIPNVVTYNSLIDGLCKSGKISYALKLVDE 349

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M DRG  P++ TY+ +L    +    ++A     ++K +  + ++ TYT +++G    G 
Sbjct: 350 MHDRGQPPDIITYSSLLDALCKNHPGDKAIALLTKLKDQGLQPNMYTYTILINGLCKGGR 409

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
            + A+N+F+ ++  G   +V TY  MI V C       A+ +  +M   G +PN+ TY +
Sbjct: 410 PEDAQNIFEDLLVKGYNINVNTYTVMIHVFCNNGMFGEALAMLSKMEENGCIPNAVTYEI 469

Query: 353 VIRGLCHTGEMERA----LEFVGR 372
           +IR L    E ++A    LE + R
Sbjct: 470 IIRSLFDKDENDKAEKLLLEMITR 493



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 123/245 (50%), Gaps = 9/245 (3%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   +D    +++     ++ + M    + P  +++ I+   +      D A+ +F  M
Sbjct: 256 TYSSLMDGYCLVKEVNKAKSIFNNMAQGGVNPDIQSYNILINGFCKIKMTDAAMNLFEEM 315

Query: 165 HEHGCRQ---SLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCL 219
           H   CR+   ++ ++N+++D LCK  K+  A  L      RG+   D+I+Y+ + +  C 
Sbjct: 316 H---CRKIIPNVVTYNSLIDGLCKSGKISYALKLVDEMHDRGQ-PPDIITYSSLLDALCK 371

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
               +KA+ +L ++ D+GL PN+ TY I++ G  + G+ E+A   F ++  +   I+V T
Sbjct: 372 NHPGDKAIALLTKLKDQGLQPNMYTYTILINGLCKGGRPEDAQNIFEDLLVKGYNINVNT 431

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           YT ++H F   G    A  +   M   G +P+  TY  +I+ L  KD  + A  +  EM+
Sbjct: 432 YTVMIHVFCNNGMFGEALAMLSKMEENGCIPNAVTYEIIIRSLFDKDENDKAEKLLLEMI 491

Query: 340 GKGYM 344
            +G +
Sbjct: 492 TRGLL 496



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 78/149 (52%), Gaps = 3/149 (2%)

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
           A +   CK+  V+ A  VF  M+ KG+ PN  TY+ ++ G C   E+ +A      M   
Sbjct: 224 APVSTFCKEGKVKEAKNVFAAMMKKGFKPNVVTYSSLMDGYCLVKEVNKAKSIFNNMAQG 283

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
              P++Q+YNILI  FC     +  + LFE+M     +PN+ TYN LI  +    KS  +
Sbjct: 284 GVNPDIQSYNILINGFCKIKMTDAAMNLFEEMHCRKIIPNVVTYNSLIDGLC---KSGKI 340

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
             A KL+ EM DRG  P   T++ +L+ L
Sbjct: 341 SYALKLVDEMHDRGQPPDIITYSSLLDAL 369


>gi|225436259|ref|XP_002275952.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Vitis vinifera]
          Length = 566

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/390 (28%), Positives = 191/390 (48%), Gaps = 10/390 (2%)

Query: 68  TPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVH 127
           + +LV +++ R+ NH   A  FF   +  P YAHS  ++   I +  ++R + T W L+ 
Sbjct: 112 SSELVVEVLSRVRNHWEAAFTFFLWAAKQPGYAHSLRAYHSMISILGKMRKFDTAWALID 171

Query: 128 RMKSLSLGP---TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
            M+    G    T  T +I+  RY +     +A+  F +  +      +  F  +L  LC
Sbjct: 172 EMRGGRTGTSLVTPHTLSIMIRRYCAVHDVGKAINTFYAHKQFKFGVGIEEFQNLLSALC 231

Query: 185 KEKKVEKAYNLFKVFRGKFKADVISYNVIANGWC-LVKRTNKALEVLKEMVDRGLNPNLT 243
           + K V+ A  L    R  F  D  S+N+I NGWC ++    +A    +EM +RG+  ++ 
Sbjct: 232 RYKNVQDAEQLLFCNRNVFPFDTKSFNIILNGWCNVIGSMREAERFWREMSNRGIQRDVV 291

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           +Y+ ++  Y +   + +  + F +MK+ +   D   Y  +VH       +K A N+   M
Sbjct: 292 SYSSIISCYSKVTNLNKVLKLFNQMKEMEIAPDRKVYNAVVHALAKASFVKEALNLMKAM 351

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G+ P   TYN++I+ L +   +  A  VF+EM+ +G  P   TY+   R L    E+
Sbjct: 352 EGKGIAPDSVTYNSLIKPLSRARKINEAKEVFDEMLQRGLSPTIRTYHAFFRILKSGEEV 411

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
              LE   +MK+  C P+  TY +LIR FC   +++   +L+ +M      P+  +Y +L
Sbjct: 412 FMLLE---KMKETGCHPDKDTYIMLIRRFCRWRQLDNVFKLWSEMSENGVGPDRSSYIVL 468

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
           I  +F+  K ++   A K  IEM ++ F+P
Sbjct: 469 IHGLFLNGKLEE---AYKYYIEMKEKQFLP 495



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 89/208 (42%), Gaps = 33/208 (15%)

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVI 213
           ++ +K+F  M E         +N ++  L K   V++A NL K   GK  A D ++YN +
Sbjct: 307 NKVLKLFNQMKEMEIAPDRKVYNAVVHALAKASFVKEALNLMKAMEGKGIAPDSVTYNSL 366

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN--------------------------- 246
                  ++ N+A EV  EM+ RGL+P + TY+                           
Sbjct: 367 IKPLSRARKINEAKEVFDEMLQRGLSPTIRTYHAFFRILKSGEEVFMLLEKMKETGCHPD 426

Query: 247 -----IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
                ++++ + R  Q++  ++ + EM +     D  +Y  ++HG  + G+++ A   + 
Sbjct: 427 KDTYIMLIRRFCRWRQLDNVFKLWSEMSENGVGPDRSSYIVLIHGLFLNGKLEEAYKYYI 486

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVE 329
            M     LP   T + +   +  K++ +
Sbjct: 487 EMKEKQFLPEPKTEDMLQAWISGKETAD 514


>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 512

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 186/339 (54%), Gaps = 6/339 (1%)

Query: 130 KSLSLG--PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           K L+LG    Q ++  +       G+   A+++   +     R  +  +NTI+D +CK+K
Sbjct: 164 KVLALGFQLNQVSYRTLINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDK 223

Query: 188 KVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
            V  A++ +     K     V++YN +  G C++ +   A+ +L +M+   +NP + T++
Sbjct: 224 LVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFS 283

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
           I++  + + G+++EA   F+ M K+  + ++VTY ++++G+ +V E+ +A ++F+ M   
Sbjct: 284 ILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQI 343

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           GV P V +Y+ MI   CK   V+ A+ +FEEM  K   P+  TYN +I GLC +G +  A
Sbjct: 344 GVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYA 403

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
           L+ +G M D    PN+ TYN L+   C    +++ +EL  K+      P++ TYNILI+ 
Sbjct: 404 LKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILING 463

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           +    KS  L  A K+  +++  G+    +T+N ++ G 
Sbjct: 464 LC---KSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKGF 499



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 183/377 (48%), Gaps = 4/377 (1%)

Query: 90  FNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149
           FN L +      S   F   +    +   Y  V +L  +M+   +     T +I+   + 
Sbjct: 56  FNHLLHQKNPTPSIIQFGKILGSLVKANHYSIVVSLHRQMEFNGIASNLVTLSILINCFS 115

Query: 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVI 208
             G    +  +F ++ + G      +  T++  LC +  + KA +   KV    F+ + +
Sbjct: 116 QLGHNSLSFSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQV 175

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           SY  + NG C V +T  ALE+L+ +  + +  ++  YN ++ G  +   + +A+ F+ EM
Sbjct: 176 SYRTLINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEM 235

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
             ++    VVTY T++ G  ++G++K A  +   M+   + P+V T++ ++   CK+  V
Sbjct: 236 VAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGKV 295

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           + A  VF  M+ K   PN  TYN ++ G C   E+ +A      M      P+V +Y+I+
Sbjct: 296 KEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIM 355

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           I  FC    ++  ++LFE+M      P++ TYN LI  +    KS  +  A KL+ EM D
Sbjct: 356 ISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLC---KSGRISYALKLIGEMHD 412

Query: 449 RGFMPRKFTFNRVLNGL 465
           RG  P   T+N +L+ L
Sbjct: 413 RGQPPNIITYNSLLDAL 429



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 150/292 (51%), Gaps = 1/292 (0%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           ++  ID   + +     +     M +  + PT  T+  +       G+   A+ +   M 
Sbjct: 212 YNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMI 271

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTN 224
                 ++ +F+ ++D  CKE KV++A N+F V   K  K ++++YN + NG+CLV   N
Sbjct: 272 LENINPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVN 331

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           KA  +   M   G+ P++ +Y+I++ G+ +   ++EA + F EM  ++   DVVTY +++
Sbjct: 332 KAESIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLI 391

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            G    G I  A  +   M + G  P++ TYN+++  LCK   V+ AI +  ++      
Sbjct: 392 DGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQ 451

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
           P+  TYN++I GLC +G ++ A +    +  +    +V TYN +I+ FC  G
Sbjct: 452 PSVCTYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKGFCKKG 503



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 153/306 (50%), Gaps = 4/306 (1%)

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRGKF-KADVISYNVIANGWCLVKRTNKALEVLKEM 233
           S+ T+++ LCK  + + A  + +   GK  + DV+ YN I +G C  K  N A +   EM
Sbjct: 176 SYRTLINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEM 235

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           V + + P + TYN ++ G    GQ+++A     +M        V T++ +V  F   G++
Sbjct: 236 VAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGKV 295

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           K A+NVF  M+   V P++ TYN+++   C  + V  A  +F  M   G  P+  +Y+++
Sbjct: 296 KEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIM 355

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           I G C    ++ A++    M   +  P+V TYN LI   C +G I   L+L  +M     
Sbjct: 356 ISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEMHDRGQ 415

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGL 473
            PN+ TYN L+ ++      D    A +LL ++ D    P   T+N ++NGL   G    
Sbjct: 416 PPNIITYNSLLDALCKNHHVDK---AIELLTKLKDHNIQPSVCTYNILINGLCKSGRLKD 472

Query: 474 AKEILR 479
           A+++  
Sbjct: 473 AQKVFE 478



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 158/363 (43%), Gaps = 41/363 (11%)

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV--FRGKFKADVISYNVIANGWCLVK 221
           +H+     S+  F  IL  L K        +L +   F G   +++++ +++ N +  + 
Sbjct: 60  LHQKNPTPSIIQFGKILGSLVKANHYSIVVSLHRQMEFNG-IASNLVTLSILINCFSQLG 118

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
             + +  V   ++ +G  P+  T   ++KG    G I +A  F  ++     +++ V+Y 
Sbjct: 119 HNSLSFSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQVSYR 178

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
           T+++G   VG+ K A  +   +    V   V  YN +I  +CK   V +A   + EMV K
Sbjct: 179 TLINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAK 238

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
              P   TYN +I GLC  G+++ A+  + +M  +   P V T++IL+  FC  G+++  
Sbjct: 239 RICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGKVKEA 298

Query: 402 LELF---------------EKMGSGVCL--------------------PNLDTYNILISS 426
             +F                 + +G CL                    P++ +Y+I+IS 
Sbjct: 299 KNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISG 358

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGR 486
               K  D+   A KL  EM  +   P   T+N +++GL   G    A +++      G+
Sbjct: 359 FCKIKMVDE---AMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEMHDRGQ 415

Query: 487 LPR 489
            P 
Sbjct: 416 PPN 418



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 124/247 (50%), Gaps = 5/247 (2%)

Query: 83  ALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           A+  LH   + + +PT  ++ S    A     ++++ + V+ +   M    + P   T+ 
Sbjct: 263 AIGLLHKMILENINPT-VYTFSILVDAFCKEGKVKEAKNVFVV---MMKKDVKPNIVTYN 318

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK 202
            +   Y    + ++A  IF +M + G    ++S++ ++   CK K V++A  LF+    K
Sbjct: 319 SLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCK 378

Query: 203 -FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
               DV++YN + +G C   R + AL+++ EM DRG  PN+ TYN +L    +   +++A
Sbjct: 379 QIFPDVVTYNSLIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKA 438

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
                ++K    +  V TY  +++G    G +K A+ VF+ ++  G    V TYN MI+ 
Sbjct: 439 IELLTKLKDHNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKG 498

Query: 322 LCKKDSV 328
            CKK  V
Sbjct: 499 FCKKGFV 505


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 109/391 (27%), Positives = 197/391 (50%), Gaps = 4/391 (1%)

Query: 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           H+  + +  ++   R        + + +M  L   P+  TF  +   +    +   A+ +
Sbjct: 114 HNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYM 173

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCL 219
           F  M   G + ++  +NTI+D LCK K+V+ A +L  ++ +     DV++YN + +G C 
Sbjct: 174 FDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCS 233

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
             R + A  ++  M  R + P++ T+N ++    + G++ EA  F+ EM +R  + D+VT
Sbjct: 234 SGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVT 293

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y+ +++G  +   +  A  +F  MV+ G  P V TY+ +I   CK   VE+ + +F EM 
Sbjct: 294 YSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMS 353

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            +G + N+ TY ++I+G C  G++  A E   RM      PN+ TYN+L+   CD G+IE
Sbjct: 354 QRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIE 413

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
           + L +   M       ++ TYNI+I  M    K+ ++  A  +   +  +G MP  +T+ 
Sbjct: 414 KALVILADMQKNGMDADIVTYNIIIRGMC---KAGEVADAWDIYCSLNCQGLMPDIWTYT 470

Query: 460 RVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
            ++ GL   G +  A  + R     G LP +
Sbjct: 471 TMMLGLYKKGLRREADALFRKMKEDGILPNE 501



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 162/331 (48%), Gaps = 4/331 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN- 194
           P+   F+ +        K D  + ++  M   G   +L + N +L+  C+  ++  A + 
Sbjct: 79  PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSF 138

Query: 195 LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           L K+ +   +  ++++  + NG+C   R   AL +  +MV  G  PN+  YN ++ G  +
Sbjct: 139 LGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCK 198

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
           + Q++ A      M+K     DVVTY +++ G    G    A  +   M    + P V T
Sbjct: 199 SKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFT 258

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           +NA+I    K+  V  A   +EEM+ +   P+  TY+++I GLC    ++ A E  G M 
Sbjct: 259 FNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMV 318

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
              C P+V TY+ILI  +C + ++E G++LF +M     + N  TY ILI       ++ 
Sbjct: 319 SKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYC---RAG 375

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            L VA ++   MV  G  P   T+N +L+GL
Sbjct: 376 KLNVAEEIFRRMVFCGVHPNIITYNVLLHGL 406



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 126/267 (47%), Gaps = 3/267 (1%)

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
           + + +L++   MV     P++  ++ +L    +  + +     + +M+      ++ T  
Sbjct: 61  KLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCN 120

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
            +++ F    ++  A +    M+  G  PS+ T+ +++   C+ D V +A+ +F++MVG 
Sbjct: 121 ILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGM 180

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
           GY PN   YN +I GLC + +++ AL+ + RM+ D   P+V TYN LI   C +G     
Sbjct: 181 GYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDA 240

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
             +   M      P++ T+N LI +     +  +   A +   EM+ R   P   T++ +
Sbjct: 241 TRMVSCMTKREIYPDVFTFNALIDACVKEGRVSE---AEEFYEEMIRRSLDPDIVTYSLL 297

Query: 462 LNGLLLIGNQGLAKEILRLQSRCGRLP 488
           + GL +      A+E+       G  P
Sbjct: 298 IYGLCMYSRLDEAEEMFGFMVSKGCFP 324


>gi|449444522|ref|XP_004140023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 783

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 179/348 (51%), Gaps = 4/348 (1%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           +   W ++  +K+ ++  + + F+++ E Y  AG  ++AV+ F  M +  C+  L +FN 
Sbjct: 109 FELYWKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFGLMRDFDCKPDLFAFNL 168

Query: 179 ILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           IL  L +++    A  ++ ++ +     DV++Y ++ +G C   +T  AL +  EM DRG
Sbjct: 169 ILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRG 228

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
           + PN   Y+IVL G  +A +I +A R F +M+   C  D++TY  +++GF   G +  A 
Sbjct: 229 ILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAF 288

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
            +   +   G +  V  Y  +I  L +    E A + +++M+ +   P+   Y ++IRGL
Sbjct: 289 TLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGL 348

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
              G +  AL  +G M +    P+   YN LI+ FCD G ++    L  ++    C PN 
Sbjct: 349 SQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNN 408

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            TY+ILI  M    K+  +  A  +  EM   G +P   TFN ++NGL
Sbjct: 409 HTYSILICGMC---KNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGL 453



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 104/388 (26%), Positives = 180/388 (46%), Gaps = 52/388 (13%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            L   M    + P Q  ++I+      A K   A ++F  M   GC + L ++N +L+  
Sbjct: 219 VLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGF 278

Query: 184 CKEKKVEKAYNLF------------------------------------KVFRGKFKADV 207
           CK   ++ A+ L                                     K+ R   K DV
Sbjct: 279 CKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDV 338

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           + Y ++  G     R  +AL +L EM +RGL P+   YN ++KG+   G ++EA    LE
Sbjct: 339 MLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLE 398

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           + K  C  +  TY+ ++ G    G I +A+++F  M   G LPSV T+N++I  LCK + 
Sbjct: 399 ISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANR 458

Query: 328 VENAILVFEEM-------------VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           +E A L+F +M              G   + +  +  V++  LC +G + +A + + ++ 
Sbjct: 459 LEEARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLV 518

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
           D    P+++TYNILI  FC  G I    +LF++M     +P+  TY  LI  ++   +++
Sbjct: 519 DSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNE 578

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           D L   ++  +MV +G +P   T+  ++
Sbjct: 579 DAL---EIFEQMVKKGCVPESSTYKTIM 603



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 104/396 (26%), Positives = 183/396 (46%), Gaps = 13/396 (3%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  +    R   +     + ++M   +L P   T+ I+        K   A+ +F  M
Sbjct: 165 AFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDALVLFDEM 224

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
            + G   +   ++ +L  LC+ KK+  A  LF   R      D+I+YNV+ NG+C     
Sbjct: 225 TDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYL 284

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A  +L+ +   G    +  Y  ++ G FRA + EEA  ++ +M +   + DV+ YT +
Sbjct: 285 DDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIM 344

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G    G +  A  +   M   G+ P    YNA+I+  C    ++ A  +  E+     
Sbjct: 345 IRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKHDC 404

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN+ TY+++I G+C  G + +A      M+   C P+V T+N LI   C A  +E    
Sbjct: 405 FPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEARL 464

Query: 404 LFEKMGSGVCLPNL---------DTYNILISSMFVRK--KSDDLLVAGKLLIEMVDRGFM 452
           LF +M   V  P+L           ++I    + + +  +S  +L A KLL+++VD G +
Sbjct: 465 LFYQM-EIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVL 523

Query: 453 PRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           P   T+N ++NG    GN   A ++ +     G +P
Sbjct: 524 PDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMP 559



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 101/224 (45%), Gaps = 3/224 (1%)

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
           T  ++++    +    E  W+   E+K    +I    ++ ++  +   G  ++A   F  
Sbjct: 94  TVQDLIIGKLIKENAFELYWKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFGL 153

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M +    P +  +N ++  L +K++   A+ V+ +M+     P+  TY ++I GLC T +
Sbjct: 154 MRDFDCKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCK 213

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
            + AL     M D    PN   Y+I++   C A +I     LF KM +  C  +L TYN+
Sbjct: 214 TQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNV 273

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
           L++        DD   A  LL  +   G +     +  ++NGL 
Sbjct: 274 LLNGFCKSGYLDD---AFTLLQLLTKDGHILGVIGYGCLINGLF 314



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/270 (20%), Positives = 111/270 (41%), Gaps = 35/270 (12%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           +  ++ ER   +G   +A K+ + + + G    + ++N +++  CK   +  A+ LFK  
Sbjct: 493 SLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEM 552

Query: 200 RGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL--------- 249
           + K    D ++Y  + +G     R   ALE+ ++MV +G  P  +TY  ++         
Sbjct: 553 QLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNI 612

Query: 250 --------------KGY-----------FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
                         +G+           F   +++ A R  LEM  +    D+  YT  +
Sbjct: 613 SLALSVWMKYLRDFRGWEDEKVRVVAESFDNEELQTAIRRLLEMDIKSKNFDLAPYTIFL 672

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            G         A  +F  + +  +  S A+   +I  LC  ++++ A+ VF   + +G+ 
Sbjct: 673 IGLVQAKRDCEAFAIFSVLKDFKMNISSASCVMLIGRLCMVENLDMAMDVFLFTLERGFR 732

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
                 N ++  L H    + AL    RM+
Sbjct: 733 LMPPICNQLLCNLLHLDRKDDALFLANRME 762



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 94/211 (44%), Gaps = 6/211 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+  + +    AG+ + A++IF  M + GC    +++ TI+   C+E  +  A ++
Sbjct: 559 PDSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLALSV 618

Query: 196 FKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           +  +   F+  +     V+A  +   +    A+  L EM  +  N +L  Y I L G  +
Sbjct: 619 WMKYLRDFRGWEDEKVRVVAESFD-NEELQTAIRRLLEMDIKSKNFDLAPYTIFLIGLVQ 677

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG--VLPSV 312
           A +  EA+  F  +K  K  I   +   ++    +V  +  A +VF   +  G  ++P +
Sbjct: 678 AKRDCEAFAIFSVLKDFKMNISSASCVMLIGRLCMVENLDMAMDVFLFTLERGFRLMPPI 737

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
              N ++  L   D  ++A+ +   M   GY
Sbjct: 738 C--NQLLCNLLHLDRKDDALFLANRMEASGY 766


>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
          Length = 736

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 119/410 (29%), Positives = 191/410 (46%), Gaps = 26/410 (6%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII------AERYVSAGKAD 155
           +PS F+  +      +DY   + L++RM +    P    + I        E+  S    D
Sbjct: 111 NPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLD 170

Query: 156 RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIA 214
            A KI+  M    C  +  +       LC   K +KA+ L K + R  F  D  +Y+ + 
Sbjct: 171 LAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVI 230

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
              C   +  KA  + +EM   G+ P++ TY I++  + +AG IE+A   F EM+   C 
Sbjct: 231 TFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCS 290

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
             VVTYT ++H +    ++ +A ++F  MV+ G  P+  TY A++  LCK  ++  A  V
Sbjct: 291 PTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEV 350

Query: 335 FEEMVGKG----------------YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           + +++G                    PN  TY  ++ GLC   +++ A E +  M    C
Sbjct: 351 YAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGC 410

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
           EPN   Y+ LI  FC AG+I+   E+F +M     LP++ TY  LI  MF   K   L +
Sbjct: 411 EPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMF---KDGRLDL 467

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           A K+L +M+     P   T+  +++GL  IG    A ++L L    G  P
Sbjct: 468 AMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSP 517



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 177/368 (48%), Gaps = 21/368 (5%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           S++   I            + L   MK + + P   T+ I+ + +  AG  ++A  +F  
Sbjct: 224 STYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEE 283

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKR 222
           M   GC  ++ ++  ++    K K+V +A ++F ++     + + ++Y  + +G C    
Sbjct: 284 MRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGN 343

Query: 223 TNKALEVLKEMV---------------DR-GLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
            +KA EV  +++               DR  L PN+ TY  ++ G  +A +++ A     
Sbjct: 344 ISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLD 403

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
            M    CE + + Y  ++ GF   G+I  A+ VF  M   G LPSV TY ++I  + K  
Sbjct: 404 AMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDG 463

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            ++ A+ V  +M+     PN  TY  +I GLC  GE E+AL+ +  M++  C PNV TY 
Sbjct: 464 RLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYT 523

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            LI     AG+I+  L+LF +M    C PN  TY +LI+ +     +  LL   +LL+  
Sbjct: 524 ALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLC----AAGLLDKARLLLGE 579

Query: 447 VDRGFMPR 454
           + + + P+
Sbjct: 580 MKQTYWPK 587



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/413 (26%), Positives = 182/413 (44%), Gaps = 61/413 (14%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           + +HRM+  S  P   T+  +   ++   +     +I   M   GC  + + FN+++   
Sbjct: 63  SFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSY 122

Query: 184 CKEKKVEKAYNL---------------FKVFRG------------------KFKADVISY 210
           C EK    AY L               + +F G                  K   ++++ 
Sbjct: 123 CNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAA 182

Query: 211 NVIANG---------WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
           N + N           C V + +KA +++KEM+ +G  P+ +TY+ V+     A ++E+A
Sbjct: 183 NCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKA 242

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
           +  F EMK      DV TYT ++  F   G I++A+ +F+ M + G  P+V TY A+I  
Sbjct: 243 FLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHA 302

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM------KD 375
             K   V  A  +F  MV  G  PN  TY  ++ GLC  G + +A E   ++       D
Sbjct: 303 YLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSAD 362

Query: 376 DE----CE------PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
            +    CE      PNV TY  L+   C A +++   EL + M S  C PN   Y+ LI 
Sbjct: 363 SDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALID 422

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
                 K D    A ++ ++M   G++P   T+  +++ +   G   LA ++L
Sbjct: 423 GFCKAGKIDS---AQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVL 472



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/430 (25%), Positives = 182/430 (42%), Gaps = 92/430 (21%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L   M+S+   PT  T+  +   Y+ A +  +A  IF  M + GCR +  ++  ++D LC
Sbjct: 280 LFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLC 339

Query: 185 KEKKVEKAYNLFKVF-----------------RGKFKADVISYNVIANGWCLVKRTNKAL 227
           K   + KA+ ++                    R     +V++Y  + +G C   + + A 
Sbjct: 340 KAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAH 399

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK----------------- 270
           E+L  M+  G  PN   Y+ ++ G+ +AG+I+ A   FL+M K                 
Sbjct: 400 ELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRM 459

Query: 271 ------------------RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
                               C  +VVTYT ++ G   +GE ++A  +   M   G  P+V
Sbjct: 460 FKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNV 519

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            TY A+I  L K   ++ ++ +F +M  KG  PN  TY V+I  LC  G +++A   +G 
Sbjct: 520 VTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGE 579

Query: 373 MKD----------------------------DECE-----PNVQTYNILIRYFCDAGEIE 399
           MK                             +E E     P    Y +LI  F  AG +E
Sbjct: 580 MKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLE 639

Query: 400 RGLELFEKM---GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
             +EL ++M    S V   N D Y  LI ++ +  + ++   A +L  EM  RGF+P   
Sbjct: 640 IAMELHKEMMEVPSSVKTDN-DMYASLIQALCLASQVEE---AFRLYSEMTRRGFVPELS 695

Query: 457 TFNRVLNGLL 466
            F  ++ GL+
Sbjct: 696 VFVCLIKGLV 705



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 141/336 (41%), Gaps = 46/336 (13%)

Query: 183 LCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           LCKE +   A ++ +  R  FK D +    + +G       ++A+  L  M      PN+
Sbjct: 20  LCKEGRWADALDMIE--REDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNV 77

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TY  +L G+ +  Q+    R    M    C  +   + ++VH +    +   A  + + 
Sbjct: 78  VTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNR 137

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSV---------------------------------- 328
           M   G  P    YN  I  +C ++ +                                  
Sbjct: 138 MTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARC 197

Query: 329 -------ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
                  + A  + +EM+ KG++P+++TY+ VI  LCH  ++E+A      MK     P+
Sbjct: 198 LCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPD 257

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
           V TY ILI  FC AG IE+   LFE+M S  C P + TY  LI +     K+  +  A  
Sbjct: 258 VYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYL---KAKQVPQAND 314

Query: 442 LLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
           +   MVD G  P   T+  +++GL   GN   A E+
Sbjct: 315 IFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEV 350



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 150/347 (43%), Gaps = 47/347 (13%)

Query: 63  PSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSS--FDHAIDLAARLRDYR 120
           P++     LVD + K     A K  H   +L    +    P+   +D  ID   +     
Sbjct: 377 PNVVTYGALVDGLCK-----AHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKID 431

Query: 121 TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180
           +   +  +M      P+  T+  + +R    G+ D A+K+   M +  C  ++ ++  ++
Sbjct: 432 SAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMI 491

Query: 181 DLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
           D LC+  + EKA  L  +   K    +V++Y  + +G     + + +L++  +M  +G +
Sbjct: 492 DGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCS 551

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR---------KCEI--------------- 275
           PN  TY +++     AG +++A     EMK+          +C I               
Sbjct: 552 PNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILE 611

Query: 276 DVVTYTTI----VHG-----FGVVGEIKRARNVFDGMVNGGVLPSVAT----YNAMIQVL 322
           ++ +Y T+    V+G     F   G ++ A  +   M+   V  SV T    Y ++IQ L
Sbjct: 612 EMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMME--VPSSVKTDNDMYASLIQAL 669

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           C    VE A  ++ EM  +G++P  + +  +I+GL    + + AL+ 
Sbjct: 670 CLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQL 716


>gi|356540343|ref|XP_003538649.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Glycine max]
          Length = 543

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 132/486 (27%), Positives = 217/486 (44%), Gaps = 44/486 (9%)

Query: 14  HFFCIYRG---LSPLTTTSPAPLPPAAADP-----AALASLILTS---TDPRTLTQT--- 59
           HF C       L P    S  P PP A         +LA  + T    T P+ LTQ+   
Sbjct: 29  HFLCTMAESPELPPWLKFSDTPTPPDADSDDNFVIPSLAHWVDTHMLITKPKVLTQSPKQ 88

Query: 60  ------------------------LHCPSLHWTPQ--LVDQIIKRLWNHALKALHFFNIL 93
                                   L    L + P   LV Q++ R  N  + AL FF   
Sbjct: 89  DNLDELDAITKVLKKRYPSPELAALALDGLSFQPSSGLVSQVLNRFSNDWVPALGFFKWA 148

Query: 94  SYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLG-PTQKTFAIIAERYVSAG 152
                Y HSP   +  +D+  + + +  +  LV  M  L  G  T +T A +  R   A 
Sbjct: 149 KSQTGYRHSPELCNLMVDILGKCKSFDPMSDLVEEMAKLEQGYVTLETMAKVIRRLAKAR 208

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNV 212
           K + A++ F  M + G  +   + N ++D L K   VE A+ +   F+G       S+NV
Sbjct: 209 KHEDAIEAFRRMDKFGVNKDTAALNVLIDALVKGDSVEHAHKVVLEFKGLIPLSSHSFNV 268

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           + +GWC  ++ + A + +++M + G  P++ +Y   ++ Y       +  +   EM++  
Sbjct: 269 LMHGWCRARKFDNARKAMEDMKELGFEPDVFSYTSFIEAYCHERDFRKVDQVLEEMRENG 328

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
           C  + VTYTT++   G  G++ +A  V++ M   G +     Y+ MI +L K   +++A 
Sbjct: 329 CPPNAVTYTTVMLHLGKAGQLSKALEVYEKMKCDGCVADTPVYSCMIFILGKAGRLKDAC 388

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
            VFE+M  +G + +  TYN +I   C     E AL  +  M+D  C+PNV TY+ L++  
Sbjct: 389 DVFEDMPKQGVVRDVVTYNTMISTACAHSREETALRLLKEMEDGSCKPNVGTYHPLLKMC 448

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
           C    ++    L + M      P+L TY++L++++    K  D   A   L EMV +GF 
Sbjct: 449 CKKKRMKVLKFLLDHMFKNDISPDLATYSLLVNALCKTGKVAD---AYSFLEEMVLKGFT 505

Query: 453 PRKFTF 458
           P+  T 
Sbjct: 506 PKPSTL 511


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 107/370 (28%), Positives = 181/370 (48%), Gaps = 4/370 (1%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
           +W +   M    + P   T++ + E Y    + D A K+ + M E GC  +  ++N ++ 
Sbjct: 228 LWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIA 287

Query: 182 LLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
            LC+   VE+A+   K         D  +Y  + NG C  +R+N+A  +L EM    L P
Sbjct: 288 GLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKP 347

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           N+  Y  ++ G+ R G  +EA++   EM     + + +TY  +V G   +G++ RA  + 
Sbjct: 348 NVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLL 407

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
             MV     P   TYN +I+   +  S ++A  +  EM   G  PN  TY+++I GLC +
Sbjct: 408 KQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQS 467

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
           GE E+A + +  M     +PN   Y  LI  +C  G +    E+F+KM     LP+L  Y
Sbjct: 468 GEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCY 527

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           N LI   F   K   +  + K   +M +RG +P +FT++ +++G L  G+   A+++++ 
Sbjct: 528 NSLI---FGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQR 584

Query: 481 QSRCGRLPRQ 490
               G  P  
Sbjct: 585 MLDTGLKPND 594



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 129/486 (26%), Positives = 221/486 (45%), Gaps = 34/486 (6%)

Query: 36  AAADPAALASLILT-----STDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFF 90
           +AADP A+A+ + T     S D R    +   PS   +P  +  +++R  + +   LH  
Sbjct: 44  SAADPDAVAAEVATLLSRCSGDWRLAVSSSDLPS-RLSPAAISSLVRRRPSPSSPRLHPK 102

Query: 91  NILSY----HPTYAHS---PSSFDH-AIDLAA-------------RLRDYRT---VWTLV 126
            +L +     P  A S   P +F H A+ L A              +R Y +   V   +
Sbjct: 103 LLLDFFYWSSPQLAPSAPAPDAFAHLAMSLCAGSLFNLANGLLIKMIRAYPSPPVVLASI 162

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186
           HR  S S   +     ++ + Y  +G+   A ++ L M + G   S+   N +L  L + 
Sbjct: 163 HRALSDSGHRSPAVLDVLVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRA 222

Query: 187 KKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
             +   + + +   G     DV +Y+ +   +C V+  + A +VL EM +RG   N  TY
Sbjct: 223 DAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTY 282

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           N+++ G  R+G +EEA+ F  +M+      D  TY  +++G         A+ + D M  
Sbjct: 283 NVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSC 342

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
             + P+V  Y  +I    ++ + + A  + +EMV  G  PN  TY+ ++RGLC  G+M+R
Sbjct: 343 AELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDR 402

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           A   + +M  D   P+  TYN++I         +    L  +M +    PN+ TY+I+I 
Sbjct: 403 ASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIH 462

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
            +    +S +   A  LL EM  +G  P  F +  +++G    GN  LA EI    ++  
Sbjct: 463 GLC---QSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVN 519

Query: 486 RLPRQF 491
            LP  +
Sbjct: 520 VLPDLY 525



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 177/367 (48%), Gaps = 4/367 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++D+ +    ++        L+ +M   S  P   T+ +I E +        A ++   M
Sbjct: 386 TYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEM 445

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
              G   ++ +++ ++  LC+  + EKA +L +    K  K +   Y  + +G+C     
Sbjct: 446 ENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNV 505

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A E+  +M    + P+L  YN ++ G  + G++EE+ ++F +M++R    +  TY+ +
Sbjct: 506 SLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGL 565

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +HG+   G+++ A  +   M++ G+ P+   Y  +++   K D +E     F+ M+ +G 
Sbjct: 566 IHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGV 625

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
           M ++  Y ++I  L  +G ME A   +  ++ +   P+V  Y+ LI   C   + E+   
Sbjct: 626 MLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFG 685

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           + ++M      PN+  YN LI  +    KS D+  A  +   ++ +G +P   T+  +++
Sbjct: 686 ILDEMSKKGVDPNIVCYNALIDGLC---KSGDISYARNVFNSILAKGLVPNCVTYTSLID 742

Query: 464 GLLLIGN 470
           G   +G+
Sbjct: 743 GSCKVGD 749



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 118/532 (22%), Positives = 228/532 (42%), Gaps = 58/532 (10%)

Query: 1   MFALLRKPPKNHLHFFCIYRGLSPLTTTSPAPLP------PAAADPAALASLILTSTDPR 54
           +  ++R  P   +    I+R LS     SPA L         +      A ++L   D R
Sbjct: 145 LIKMIRAYPSPPVVLASIHRALSDSGHRSPAVLDVLVDTYKKSGRVQDAAEVVLMMRD-R 203

Query: 55  TLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHA--IDL 112
            +  ++ C          + ++K L      AL  + +  +      SP  + ++  I+ 
Sbjct: 204 GMAPSIRC---------CNALLKDLLRADAMAL-LWKVREFMVGAGISPDVYTYSTLIEA 253

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
             ++R++ T   ++  M+    G    T+ ++      +G  + A      M ++G    
Sbjct: 254 YCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPD 313

Query: 173 LNSFNTILDLLCKEKKVEKAYNL--------------------------------FKVFR 200
             ++  +++ LCK ++  +A  L                                FK+ +
Sbjct: 314 GFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIK 373

Query: 201 GKFKADV----ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256
               A V    I+Y+ +  G C + + ++A  +LK+MV     P+  TYN++++G+FR  
Sbjct: 374 EMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHH 433

Query: 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
             ++A+R   EM+      +V TY+ ++HG    GE ++A ++ + M   G+ P+   Y 
Sbjct: 434 SKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYA 493

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
            +I   C++ +V  A  +F++M     +P+   YN +I GL   G +E + ++  +M++ 
Sbjct: 494 PLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQER 553

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
              PN  TY+ LI  +   G++E   +L ++M      PN   Y  L+ S F   KSDD+
Sbjct: 554 GLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYF---KSDDI 610

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
                    M+D+G M     +  +++ L   GN   A  +L    + G +P
Sbjct: 611 EKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVP 662



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 101/394 (25%), Positives = 175/394 (44%), Gaps = 10/394 (2%)

Query: 90  FNILSYHPTYAHSPSSFDHAIDLAARLR--DYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
           F +LS       SP+ + ++I +    +  +      L+  M +  L P    +A +   
Sbjct: 439 FRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISG 498

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKAD 206
           Y   G    A +IF  M +      L  +N+++  L K  +VE++   F   + +    +
Sbjct: 499 YCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPN 558

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
             +Y+ + +G+        A ++++ M+D GL PN   Y  +L+ YF++  IE+    F 
Sbjct: 559 EFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFK 618

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
            M  +   +D   Y  ++H     G ++ A  V  G+   G +P V  Y+++I  LCK  
Sbjct: 619 SMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTA 678

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
             E A  + +EM  KG  PN   YN +I GLC +G++  A      +      PN  TY 
Sbjct: 679 DREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYT 738

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            LI   C  G+I     L+ +M +    P+   Y++L +       + DL  A  L+ EM
Sbjct: 739 SLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGC---SSAGDLEQAMFLIEEM 795

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
             RG      +FN +++G      +G  +E L+L
Sbjct: 796 FLRGHASIS-SFNNLVDGFC---KRGKMQETLKL 825



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 146/302 (48%), Gaps = 4/302 (1%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           +M+   L P + T++ +   Y+  G  + A ++   M + G + +   +  +L+   K  
Sbjct: 549 QMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSD 608

Query: 188 KVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
            +EK  + FK +       D   Y ++ +          A  VL  +   G  P++  Y+
Sbjct: 609 DIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYS 668

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
            ++ G  +    E+A+    EM K+  + ++V Y  ++ G    G+I  ARNVF+ ++  
Sbjct: 669 SLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAK 728

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G++P+  TY ++I   CK   + NA  ++ EM+  G  P++  Y+V+  G    G++E+A
Sbjct: 729 GLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQA 788

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK-MGSGVCLPNLDTYNILIS 425
           +  +  M       ++ ++N L+  FC  G+++  L+L    MG G+ +PN  T   +IS
Sbjct: 789 MFLIEEMFL-RGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGL-VPNALTIENIIS 846

Query: 426 SM 427
            +
Sbjct: 847 GL 848



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/303 (19%), Positives = 128/303 (42%), Gaps = 17/303 (5%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           ++  ID   +  D      + + + +  L P   T+  + +     G    A  ++  M 
Sbjct: 702 YNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEML 761

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNK 225
             G       ++ +         +E+A  L +    +  A + S+N + +G+C   +  +
Sbjct: 762 ATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQE 821

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
            L++L  ++ RGL PN  T   ++ G   AG++ E    F+E++++  E     ++++  
Sbjct: 822 TLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSL-- 879

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
                         F  M+N G +P +   + MI+  CK+ +++ A+++ + +V K    
Sbjct: 880 --------------FMDMINQGKIP-LDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPM 924

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
             ++Y  ++  LC  G++  AL  +  M      P+     IL+     +G I+    + 
Sbjct: 925 GCSSYLAIVDNLCRKGKLSEALNLLKEMDKRGICPSENQCLILLTNLHTSGYIQEHNTVL 984

Query: 406 EKM 408
           + M
Sbjct: 985 DNM 987



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 19/178 (10%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           S SSF++ +D   +    +    L+H +    L P   T   I      AGK      IF
Sbjct: 802 SISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIF 861

Query: 162 LSMHEHGCRQSLNSFNTI-LDLL-----------------CKEKKVEKAYNLFKVFRGKF 203
           + + +     +   F+++ +D++                 CKE  ++KA  L  V   K 
Sbjct: 862 VELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKS 921

Query: 204 KA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
                 SY  I +  C   + ++AL +LKEM  RG+ P+     I+L     +G I+E
Sbjct: 922 APMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRGICPSENQCLILLTNLHTSGYIQE 979


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 102/352 (28%), Positives = 176/352 (50%), Gaps = 4/352 (1%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           Y   W L   MK+    P   T+  +      +G    A+ +F  M   G   +  ++N 
Sbjct: 506 YEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNA 565

Query: 179 ILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           ++++L + ++++ A+ +  +  R     ++++YN +  G+C++    KA+ V+  M+ RG
Sbjct: 566 LINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRG 625

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
            + NL TYN ++KGY  +G    A R    M+   C+ D  +YT ++ GF  + +++ A 
Sbjct: 626 HSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAF 685

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
            +F+ MV+ G+ P+  TY A+I   CK + ++ A  + E M   G  PN  TYNV+I GL
Sbjct: 686 GLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGL 745

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
                   A E    M ++   PNV TY  +I   C  G     LE+F KM    CLPNL
Sbjct: 746 TKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNL 805

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
            TY+ LI ++    K ++   A  L  E+   G +P + T+ +++   ++ G
Sbjct: 806 LTYSSLIRALGQEGKVEE---AENLFAELERHGLIPDEITYVKMIEAYIMSG 854



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/361 (28%), Positives = 161/361 (44%), Gaps = 39/361 (10%)

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKR 222
           M   G + +L  +N +++ LCK+  V  A  + K VF  +   D  +Y  +  G C    
Sbjct: 376 MLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHD 435

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI------------------------ 258
            + AL+V  +M   G  PN  TY+ ++ G   +G++                        
Sbjct: 436 LDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTG 495

Query: 259 -----------EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
                      E+AWR F++MK + CE +V TYT ++ G  V G +K A  +F  M   G
Sbjct: 496 PIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDG 555

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           V P+  TYNA+I +L +   ++ A +V   M   G   N  TYN +I+G C  G+ ++A+
Sbjct: 556 VFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAM 615

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
             +  M       N+ TYN +I+ +CD+G     L + + M  G C P+  +Y  LI   
Sbjct: 616 LVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGF 675

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
               K +    A  L  EMVD G  P + T+  +++G         A  +L    R G  
Sbjct: 676 CKISKMES---AFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCR 732

Query: 488 P 488
           P
Sbjct: 733 P 733



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 170/364 (46%), Gaps = 7/364 (1%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           A+  F+ +S    + ++  +++  I++    R  +  + +++ M    L     T+  + 
Sbjct: 544 AIGLFHRMSRDGVFPNT-VTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMI 602

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFK 204
           + Y   G   +A+ +  +M + G   +L ++NTI+   C       A  +  + R G  K
Sbjct: 603 KGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCK 662

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
            D  SY  +  G+C + +   A  +  EMVD GL PN  TY  ++ GY +  +++ A   
Sbjct: 663 PDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSL 722

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
              MK+  C  +V TY  ++HG         A  +   M+  G+ P+V TY AMI  LCK
Sbjct: 723 LEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCK 782

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
             S   A+ +F +M+ +G +PN  TY+ +IR L   G++E A      ++     P+  T
Sbjct: 783 NGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEIT 842

Query: 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLI 444
           Y  +I  +  +G++E       +M    C P L TY +LI  +      ++ L+A + L 
Sbjct: 843 YVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL-----KNEYLLADQRLA 897

Query: 445 EMVD 448
            + D
Sbjct: 898 ALPD 901



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 153/334 (45%), Gaps = 5/334 (1%)

Query: 161 FLSM-HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWC 218
           FL M  + G R  L +++ +L  L +        + + ++     + +++ YN + N  C
Sbjct: 337 FLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALC 396

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
                  A  ++K++ +  ++P+  TY  ++ G+ R   ++ A + F +M K  CE + V
Sbjct: 397 KDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTV 456

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TY+T+++G    G +  A ++   M+  G+LP+  T    I  LC     E+A  +F +M
Sbjct: 457 TYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDM 516

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
             KG  PN  TY  +I GLC +G ++ A+    RM  D   PN  TYN LI    +   I
Sbjct: 517 KNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRI 576

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           +    +   MG      N+ TYN +I    +       ++   ++  M+ RG      T+
Sbjct: 577 KYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAML---VMNNMLQRGHSANLVTY 633

Query: 459 NRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQFK 492
           N ++ G    GN   A  IL L    G  P ++ 
Sbjct: 634 NTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWS 667



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 119/315 (37%), Gaps = 60/315 (19%)

Query: 136  PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
            P   T+  + +     G    A+++F  M E GC  +L ++++++  L +E KVE+A NL
Sbjct: 768  PNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENL 827

Query: 196  F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG--- 251
            F ++ R     D I+Y  +   + +  +   A   L  M+  G  P L TY +++KG   
Sbjct: 828  FAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKN 887

Query: 252  -YFRAGQIEEAWRFFLE----------------MKKRKCEID----VVTYTTIVHGFGVV 290
             Y  A Q   A    +                 M  +  E+D    V     +V      
Sbjct: 888  EYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTA 947

Query: 291  GEIKRARNVFDGMVNGGVLPSVATYNAM-------------------------------- 318
            G    A  +   M++ G+ P    YN++                                
Sbjct: 948  GRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGY 1007

Query: 319  ---IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
               I  LC+    + A + FE M+ + + P+     V+I GL   G  +  +EF+  M+ 
Sbjct: 1008 KELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMET 1067

Query: 376  DECEPNVQTYNILIR 390
                P+   Y IL R
Sbjct: 1068 RRYMPSFHIYTILAR 1082


>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
          Length = 671

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 105/407 (25%), Positives = 194/407 (47%), Gaps = 23/407 (5%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           S   F+  +   A+++ + T+ +L H+M S  + P   T  I+   +    +   A  + 
Sbjct: 60  STVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFSVL 119

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLV 220
             + + G +    +F T++  +C E K+ +A +LF    G+ F+ DV++Y  + NG C V
Sbjct: 120 AKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKV 179

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
             T+ A+ +L  MV +   PN+  YN ++    +  Q+ EA+  F EM  +    D+ TY
Sbjct: 180 GNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTY 239

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
            +++H    + E K    + + MV+  ++P V ++N ++  LCK+  V  A  V ++M+ 
Sbjct: 240 NSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQ 299

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           +G  PN  TY  ++ G C   EM+ A++    M    C PNV +YN LI  +C    I++
Sbjct: 300 RGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDK 359

Query: 401 GL-------------------ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
            +                   ++F+ M    C+PN+ +YN LI+     ++ D    A  
Sbjct: 360 AIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDK---AMY 416

Query: 442 LLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           L  EM  +  +P   T++ +++GL  +     A  +      C ++P
Sbjct: 417 LFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIP 463



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 113/412 (27%), Positives = 197/412 (47%), Gaps = 25/412 (6%)

Query: 90  FNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
           FN+ S   T   SP   +++  I     L +++ V TL++ M    + P   +F  + + 
Sbjct: 221 FNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDA 280

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKAD 206
               GK   A  +   M + G   ++ ++  ++D  C   ++++A  +F     K    +
Sbjct: 281 LCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPN 340

Query: 207 VISYNVIANGWCLVKRTNKAL-------------------EVLKEMVDRGLNPNLTTYNI 247
           VISYN + NG+C ++R +KA+                   +V   MV +G  PN+ +YN 
Sbjct: 341 VISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGCMPNVISYNT 400

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ GY +  +I++A   F EM +++   D VTY+T++HG   V  ++ A  +F  MV   
Sbjct: 401 LINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACS 460

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
            +P++ TY  ++  LCK   +  A+ + + + G    P+    N+ I G+C  GE+E A 
Sbjct: 461 QIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAAR 520

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           +    +     +P+V TY+I+I   C  G ++   +LF +M    C  N   YN  I+  
Sbjct: 521 DLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNT-ITRG 579

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           F+R  +++   A +LL EMV RGF     T    +  L   G     K+ILR
Sbjct: 580 FLR--NNETSRAIQLLQEMVARGFSADASTMTLFVKMLSDDGLDQSLKQILR 629



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 5/174 (2%)

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           I  A + F+ M+     PS   +N ++  + K       + +  +M   G  PN  T ++
Sbjct: 42  IDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHI 101

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GSG 411
           +I   CH   +  A   + ++     +P+  T+  LIR  C  G+I   L LF+KM G G
Sbjct: 102 LINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEG 161

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
              P++ TY  LI+ +    K  +   A +LL  MV +   P  F +N +++ L
Sbjct: 162 F-RPDVVTYGTLINGLC---KVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSL 211



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 5/161 (3%)

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
           ++++ AI  F  M+     P++  +N ++  +         L    +M      PN+ T 
Sbjct: 40  NTIDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTL 99

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           +ILI  FC    +     +  K+      P+  T+  LI  + V  K  + L    L  +
Sbjct: 100 HILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEAL---HLFDK 156

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL--RLQSRC 484
           M+  GF P   T+  ++NGL  +GN   A  +L   +Q  C
Sbjct: 157 MIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNC 197


>gi|449494995|ref|XP_004159705.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Cucumis sativus]
          Length = 488

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 122/428 (28%), Positives = 207/428 (48%), Gaps = 8/428 (1%)

Query: 54  RTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLA 113
           ++L Q   C S+  +  LV ++++R  +    AL  F        + H+P  +D  ID  
Sbjct: 58  QSLLQDPVCNSIQLSHDLVYKLLQRFKDDWKSALGVFRWAESLSGFKHTPDLYDILIDTL 117

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            + +    +  ++  MK   L  T  T A    R+  AG+ + AV+IF  +  +G  ++ 
Sbjct: 118 GKTKQLVKMRGMLEEMKEARL-VTLDTVAKAMRRFAGAGQWENAVRIFDDLETYGLEKNT 176

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
            S N +LD LCKEKKVEKA  ++   +     +  ++N+  +GWC V + ++A   L+EM
Sbjct: 177 ESMNVLLDTLCKEKKVEKARQMYLELKSHIAPNANTFNMFIHGWCKVNKIDEAHWTLEEM 236

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
              G  P + +Y+ ++  Y       + +    EM  + C  +V+TYTTI+       E 
Sbjct: 237 KGYGHRPCVISYSTIILFYCHRCNFNKVYELLDEMDAQGCPANVITYTTIMCSLTKSEEF 296

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE-EMVGKGYMPNSTTYNV 352
           + A  + + M + G  P    YN +I  L +   V  AI VFE EM  K  +PN++TYN 
Sbjct: 297 EEALQIAERMKSAGYEPDTLFYNCLIHTLGRAGKVREAIHVFEVEMPSKSVLPNTSTYNS 356

Query: 353 VIRGLCHTGEMERALEFVGRM-KDDECEPNVQTYNILIRYFCDAGEIERGLE-LFEKMGS 410
           +I   C     E+A++ +  M K + C+P+VQTY  L++     G+ +  L  L ++M +
Sbjct: 357 MIAMYCRRAREEKAMKLLEEMQKSEHCKPDVQTYYPLLKSCFRTGKTDYDLSNLLDEMIN 416

Query: 411 GVCLP-NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
              L  ++ TY++LI  +    K D    A +L  +M+ +   PR  T   +L+      
Sbjct: 417 KHHLSLDISTYSLLIHGLCRANKCD---WAYQLFEKMISQDIKPRYLTCQLLLDEFKQKN 473

Query: 470 NQGLAKEI 477
             G+A  I
Sbjct: 474 MDGVADRI 481


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 96/301 (31%), Positives = 163/301 (54%), Gaps = 6/301 (1%)

Query: 167 HGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNK 225
           + C     ++ +++  LCK K++E+A   L K+    F  DV +Y  + +  C+  R ++
Sbjct: 5   NSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHE 64

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
           A + L+EM +R L PN+ TY +++ G  + G+++EA     +M+K KC    VTY +++ 
Sbjct: 65  ARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRK-KCVPTAVTYNSLIS 123

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
           G         A ++ + MV  G +P + TY  +I   CK    ++A+ VFE++V +G+ P
Sbjct: 124 GLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRP 183

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRM-KDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           +  TY+ +I GLC  G ++ A++  GRM K   C PN  TYN LI  FC  G+++  + L
Sbjct: 184 DVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNL 243

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
            E+M      P++ TY  L++      + DD   A  LL +M  +G  P   TF  +++G
Sbjct: 244 LERMAETGSSPDVVTYTTLMNGFCKLARLDD---AYDLLNQMTRKGLTPDVVTFTSLMDG 300

Query: 465 L 465
           L
Sbjct: 301 L 301



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 110/432 (25%), Positives = 207/432 (47%), Gaps = 49/432 (11%)

Query: 76  IKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLG 135
           +KRL   AL  L       +HP   ++ ++  HA+ +  RL + R     +  M + +L 
Sbjct: 24  VKRL-EQALIFLGKMVSKGFHPD-VYTYTAVIHALCVENRLHEARK---FLEEMANRNLT 78

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+ ++ +     G+ D AV +   M +  C  +  ++N+++  LCK ++  +AY+L
Sbjct: 79  PNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK-CVPTAVTYNSLISGLCKAERASEAYDL 137

Query: 196 FK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP------------- 240
            +  V+ G    D+ +Y  +  G+C  K+++ AL V +++V RG  P             
Sbjct: 138 LEEMVYSGCI-PDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLC 196

Query: 241 -----------------------NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
                                  N  TYN ++ G+ R G+++EA      M +     DV
Sbjct: 197 KEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDV 256

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           VTYTT+++GF  +  +  A ++ + M   G+ P V T+ +++  LC+++ + +A+ +  E
Sbjct: 257 VTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGE 316

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M  K   P   TYN ++ G C   ++E A +F+  +++ +C PNV ++NI+IR  C    
Sbjct: 317 MRRKSCSPTVYTYNTILDGYCRANQLEEARKFM--LEEMDCPPNVVSFNIMIRGLCKVNR 374

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
               +EL E+     C P++  Y  +I  +   KK D+     + ++E  + G +P   T
Sbjct: 375 SSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLE--EPGCLPNSIT 432

Query: 458 FNRVLNGLLLIG 469
           ++ ++ GL   G
Sbjct: 433 YSTLVTGLCNAG 444



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 166/319 (52%), Gaps = 12/319 (3%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG-CRQSLNSFNTILDLLCKEKKVEKAYN 194
           P   T++ + +     G+   A+ +F  M + G C  +  ++N+++   C+  K+++A N
Sbjct: 183 PDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMN 242

Query: 195 LF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
           L  ++       DV++Y  + NG+C + R + A ++L +M  +GL P++ T+  ++ G  
Sbjct: 243 LLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLC 302

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
           R  ++ +A     EM+++ C   V TY TI+ G+    +++ AR     +      P+V 
Sbjct: 303 RENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFM--LEEMDCPPNVV 360

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           ++N MI+ LCK +    A+ + EE   +   P+   Y  VI GLC   +++ A     +M
Sbjct: 361 SFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKM 420

Query: 374 KDDE-CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
            ++  C PN  TY+ L+   C+AG ++R     EK     C+PN+ TYN+LI +     +
Sbjct: 421 LEEPGCLPNSITYSTLVTGLCNAGMLDRARGYIEKG----CVPNIGTYNLLIDAFRKANR 476

Query: 433 SDDLLVAGKLLIEMVDRGF 451
            +D   A +LL +MV RGF
Sbjct: 477 DED---ARELLDDMVQRGF 492



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 153/303 (50%), Gaps = 20/303 (6%)

Query: 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH 167
            AIDL  R+            +KS S  P   T+  +   +   GK D A+ +   M E 
Sbjct: 203 EAIDLFGRM------------IKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAET 250

Query: 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKA 226
           G    + ++ T+++  CK  +++ AY+L  ++ R     DV+++  + +G C   R + A
Sbjct: 251 GSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDA 310

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
           + +L EM  +  +P + TYN +L GY RA Q+EEA +F LE  +  C  +VV++  ++ G
Sbjct: 311 VHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLE--EMDCPPNVVSFNIMIRG 368

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK-GYMP 345
              V     A  + +        P V  Y  +I  LC++  V+ A  V+ +M+ + G +P
Sbjct: 369 LCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLP 428

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           NS TY+ ++ GLC+ G ++RA  ++    +  C PN+ TYN+LI  F  A   E   EL 
Sbjct: 429 NSITYSTLVTGLCNAGMLDRARGYI----EKGCVPNIGTYNLLIDAFRKANRDEDARELL 484

Query: 406 EKM 408
           + M
Sbjct: 485 DDM 487



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 170/357 (47%), Gaps = 6/357 (1%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           +M S    P   T+  +        +   A K    M       ++ ++  ++D LCK  
Sbjct: 36  KMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGG 95

Query: 188 KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           +V++A  L    R K     ++YN + +G C  +R ++A ++L+EMV  G  P++ TY  
Sbjct: 96  RVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTT 155

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV-NG 306
           ++ G+ ++ + ++A R F ++  R    DVVTY+ ++ G    G +K A ++F  M+ +G
Sbjct: 156 LITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSG 215

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
             +P+  TYN++I   C+   ++ A+ + E M   G  P+  TY  ++ G C    ++ A
Sbjct: 216 SCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDA 275

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
            + + +M      P+V T+  L+   C    +   + +  +M    C P + TYN ++  
Sbjct: 276 YDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDG 335

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
                +++ L  A K ++E +D    P   +FN ++ GL  +     A E++    R
Sbjct: 336 YC---RANQLEEARKFMLEEMD--CPPNVVSFNIMIRGLCKVNRSSEAMELVEEARR 387



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/211 (34%), Positives = 110/211 (52%), Gaps = 7/211 (3%)

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
           C  D VTYT+++ G   V  +++A      MV+ G  P V TY A+I  LC ++ +  A 
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEAR 66

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
              EEM  +   PN  TY V+I GLC  G ++ A+  + +M+  +C P   TYN LI   
Sbjct: 67  KFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMR-KKCVPTAVTYNSLISGL 125

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
           C A       +L E+M    C+P++ TY  LI+     KKSDD L   ++  ++V RGF 
Sbjct: 126 CKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDAL---RVFEQLVARGFR 182

Query: 453 PRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           P   T++ +++GL     +G  KE + L  R
Sbjct: 183 PDVVTYSCLIDGLC---KEGRLKEAIDLFGR 210



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 123/231 (53%), Gaps = 9/231 (3%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
           ARL D    + L+++M    L P   TF  + +      +   AV I   M    C  ++
Sbjct: 270 ARLDD---AYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTV 326

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
            ++NTILD  C+  ++E+A   F +       +V+S+N++  G C V R+++A+E+++E 
Sbjct: 327 YTYNTILDGYCRANQLEEARK-FMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEA 385

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM-KKRKCEIDVVTYTTIVHGFGVVGE 292
             R  NP++  Y  V+ G  R  +++EA R + +M ++  C  + +TY+T+V G    G 
Sbjct: 386 RRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCNAGM 445

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + RAR    G +  G +P++ TYN +I    K +  E+A  + ++MV +G+
Sbjct: 446 LDRAR----GYIEKGCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQRGF 492


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 119/410 (29%), Positives = 191/410 (46%), Gaps = 26/410 (6%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII------AERYVSAGKAD 155
           +PS F+  +      +DY   + L++RM +    P    + I        E+  S    D
Sbjct: 176 NPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLD 235

Query: 156 RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIA 214
            A KI+  M    C  +  +       LC   K +KA+ L K + R  F  D  +Y+ + 
Sbjct: 236 LAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVI 295

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
              C   +  KA  + +EM   G+ P++ TY I++  + +AG IE+A   F EM+   C 
Sbjct: 296 TFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCS 355

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
             VVTYT ++H +    ++ +A ++F  MV+ G  P+  TY A++  LCK  ++  A  V
Sbjct: 356 PTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEV 415

Query: 335 FEEMVGKG----------------YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           + +++G                    PN  TY  ++ GLC   +++ A E +  M    C
Sbjct: 416 YAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGC 475

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
           EPN   Y+ LI  FC AG+I+   E+F +M     LP++ TY  LI  MF   K   L +
Sbjct: 476 EPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMF---KDGRLDL 532

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           A K+L +M+     P   T+  +++GL  IG    A ++L L    G  P
Sbjct: 533 AMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSP 582



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 177/368 (48%), Gaps = 21/368 (5%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           S++   I            + L   MK + + P   T+ I+ + +  AG  ++A  +F  
Sbjct: 289 STYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEE 348

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKR 222
           M   GC  ++ ++  ++    K K+V +A ++F ++     + + ++Y  + +G C    
Sbjct: 349 MRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGN 408

Query: 223 TNKALEVLKEMV---------------DR-GLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
            +KA EV  +++               DR  L PN+ TY  ++ G  +A +++ A     
Sbjct: 409 ISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLD 468

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
            M    CE + + Y  ++ GF   G+I  A+ VF  M   G LPSV TY ++I  + K  
Sbjct: 469 AMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDG 528

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            ++ A+ V  +M+     PN  TY  +I GLC  GE E+AL+ +  M++  C PNV TY 
Sbjct: 529 RLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYT 588

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            LI     AG+I+  L+LF +M    C PN  TY +LI+ +     +  LL   +LL+  
Sbjct: 589 ALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLC----AAGLLDKARLLLGE 644

Query: 447 VDRGFMPR 454
           + + + P+
Sbjct: 645 MKQTYWPK 652



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/413 (26%), Positives = 182/413 (44%), Gaps = 61/413 (14%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           + +HRM+  S  P   T+  +   ++   +     +I   M   GC  + + FN+++   
Sbjct: 128 SFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSY 187

Query: 184 CKEKKVEKAYNL---------------FKVFRG------------------KFKADVISY 210
           C EK    AY L               + +F G                  K   ++++ 
Sbjct: 188 CNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAA 247

Query: 211 NVIANG---------WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
           N + N           C V + +KA +++KEM+ +G  P+ +TY+ V+     A ++E+A
Sbjct: 248 NCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKA 307

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
           +  F EMK      DV TYT ++  F   G I++A+ +F+ M + G  P+V TY A+I  
Sbjct: 308 FLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHA 367

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM------KD 375
             K   V  A  +F  MV  G  PN  TY  ++ GLC  G + +A E   ++       D
Sbjct: 368 YLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSAD 427

Query: 376 DE----CE------PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
            +    CE      PNV TY  L+   C A +++   EL + M S  C PN   Y+ LI 
Sbjct: 428 SDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALID 487

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
                 K D    A ++ ++M   G++P   T+  +++ +   G   LA ++L
Sbjct: 488 GFCKAGKIDS---AQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVL 537



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/430 (25%), Positives = 182/430 (42%), Gaps = 92/430 (21%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L   M+S+   PT  T+  +   Y+ A +  +A  IF  M + GCR +  ++  ++D LC
Sbjct: 345 LFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLC 404

Query: 185 KEKKVEKAYNLFKVF-----------------RGKFKADVISYNVIANGWCLVKRTNKAL 227
           K   + KA+ ++                    R     +V++Y  + +G C   + + A 
Sbjct: 405 KAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAH 464

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK----------------- 270
           E+L  M+  G  PN   Y+ ++ G+ +AG+I+ A   FL+M K                 
Sbjct: 465 ELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRM 524

Query: 271 ------------------RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
                               C  +VVTYT ++ G   +GE ++A  +   M   G  P+V
Sbjct: 525 FKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNV 584

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            TY A+I  L K   ++ ++ +F +M  KG  PN  TY V+I  LC  G +++A   +G 
Sbjct: 585 VTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGE 644

Query: 373 MKD----------------------------DECE-----PNVQTYNILIRYFCDAGEIE 399
           MK                             +E E     P    Y +LI  F  AG +E
Sbjct: 645 MKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLE 704

Query: 400 RGLELFEKM---GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
             +EL ++M    S V   N D Y  LI ++ +  + ++   A +L  EM  RGF+P   
Sbjct: 705 IAMELHKEMMEVPSSVKTDN-DMYASLIQALCLASQVEE---AFRLYSEMTRRGFVPELS 760

Query: 457 TFNRVLNGLL 466
            F  ++ GL+
Sbjct: 761 VFVCLIKGLV 770



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/390 (25%), Positives = 161/390 (41%), Gaps = 46/390 (11%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           +K     P++ T+  + +   SAG+ D   ++   M E G      +       LCKE +
Sbjct: 31  LKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGR 90

Query: 189 VEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
              A ++ +  R  FK D +    + +G       ++A+  L  M      PN+ TY  +
Sbjct: 91  WADALDMIE--REDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTL 148

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           L G+ +  Q+    R    M    C  +   + ++VH +    +   A  + + M   G 
Sbjct: 149 LSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGC 208

Query: 309 LPSVATYNAMIQVLCKKDSV---------------------------------------- 328
            P    YN  I  +C ++ +                                        
Sbjct: 209 PPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGK 268

Query: 329 -ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
            + A  + +EM+ KG++P+++TY+ VI  LCH  ++E+A      MK     P+V TY I
Sbjct: 269 FDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTI 328

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           LI  FC AG IE+   LFE+M S  C P + TY  LI +     K+  +  A  +   MV
Sbjct: 329 LIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYL---KAKQVPQANDIFHRMV 385

Query: 448 DRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
           D G  P   T+  +++GL   GN   A E+
Sbjct: 386 DAGCRPNDVTYGALVDGLCKAGNISKAFEV 415



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 150/347 (43%), Gaps = 47/347 (13%)

Query: 63  PSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSS--FDHAIDLAARLRDYR 120
           P++     LVD + K     A K  H   +L    +    P+   +D  ID   +     
Sbjct: 442 PNVVTYGALVDGLCK-----AHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKID 496

Query: 121 TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180
           +   +  +M      P+  T+  + +R    G+ D A+K+   M +  C  ++ ++  ++
Sbjct: 497 SAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMI 556

Query: 181 DLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
           D LC+  + EKA  L  +   K    +V++Y  + +G     + + +L++  +M  +G +
Sbjct: 557 DGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCS 616

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR---------KCEI--------------- 275
           PN  TY +++     AG +++A     EMK+          +C I               
Sbjct: 617 PNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILE 676

Query: 276 DVVTYTTI----VHG-----FGVVGEIKRARNVFDGMVNGGVLPSVAT----YNAMIQVL 322
           ++ +Y T+    V+G     F   G ++ A  +   M+   V  SV T    Y ++IQ L
Sbjct: 677 EMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMME--VPSSVKTDNDMYASLIQAL 734

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           C    VE A  ++ EM  +G++P  + +  +I+GL    + + AL+ 
Sbjct: 735 CLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQL 781



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 6/188 (3%)

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           D + + G  PS  TYNA++QVL     V+    V +EM   G+  +  T       LC  
Sbjct: 29  DPLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKE 88

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
           G    AL+ + R +D + +  + T+  +I    +A   +  +    +M    C+PN+ TY
Sbjct: 89  GRWADALDMIER-EDFKLDTVLCTH--MISGLMEASYFDEAMSFLHRMRCNSCIPNVVTY 145

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
             L+S  F++KK   L    +++  M+  G  P    FN +++      +   A ++L  
Sbjct: 146 RTLLSG-FLKKKQ--LGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNR 202

Query: 481 QSRCGRLP 488
            + CG  P
Sbjct: 203 MTTCGCPP 210


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 175/335 (52%), Gaps = 10/335 (2%)

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVI 213
           D A K+   M E G      ++N +L+ LCK+ ++E+   L + +     + D  SYN +
Sbjct: 179 DEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTV 238

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
               C   +  +A ++L++M+++   P++ TYN ++ G+ +  +++EA R   +M  R+C
Sbjct: 239 VACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRC 298

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
              V+TYTT++ GF     +  A  V + M   G+ P + TYN ++  LCK   +E A  
Sbjct: 299 APTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHE 358

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           + E MV K   P+  TY++++ GLC  G+++ A   +  M +  C+PN+ T+N +I  FC
Sbjct: 359 LLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFC 418

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
            AG+++ G ++ E M    C P++ TY+ LI         D    A ++       G  P
Sbjct: 419 KAGKVDEGHKVLELMKEVSCTPDVVTYSTLI---------DGYCKANRMQDAFAILGISP 469

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            K +++ +L GL   G    A+E++ L ++ G  P
Sbjct: 470 DKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPP 504



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 174/347 (50%), Gaps = 8/347 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P+  T+  +   +  AG +   ++I   M        + + NTIL   C+   +++A   
Sbjct: 22  PSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRA--- 78

Query: 196 FKVFRGKF--KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
              FRGK        +Y ++ +G C  +R ++A ++L EM+ +  +P+   YN ++ G  
Sbjct: 79  LSHFRGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLC 138

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
           + G+I+ A      M +R C  DV+TYT+++ G      +  AR + + M   G+ P   
Sbjct: 139 KMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTV 198

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
            YNA++  LCK++ +E    + EEMV  G  P++ +YN V+  LC +G+ E A + + +M
Sbjct: 199 AYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKM 258

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
            + +C P+V TYN L+  FC   +++    L E M    C P + TY  LI       ++
Sbjct: 259 IEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGF---SRA 315

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           D L  A +++ +M   G  P   T+N +L+GL   G    A E+L +
Sbjct: 316 DRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEV 362



 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 107/391 (27%), Positives = 194/391 (49%), Gaps = 33/391 (8%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  +D   ++        L+  M      PT  T+  +   +  A +   A ++   M
Sbjct: 269 TYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDM 328

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRT 223
            + G    L ++N +LD LCK  K+E+A+ L +V   K  A DV++Y+++ NG C + + 
Sbjct: 329 FKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKV 388

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A  +L+ M++RG  PNL T+N ++ G+ +AG+++E  +    MK+  C  DVVTY+T+
Sbjct: 389 DDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTL 448

Query: 284 VHGF-------------GV----------------VGEIKRARNVFDGMVNGGVLPSVAT 314
           + G+             G+                 G+++ A+ V D M   G  P+ + 
Sbjct: 449 IDGYCKANRMQDAFAILGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSH 508

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y  +I  LC  +  + A+ + + M  +G  PN  TY+++I GLC T  +E A+  +  M 
Sbjct: 509 YALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVML 568

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
           +  C P+V TY  LI  FC   +++   + F+ M    C P+   YNILIS      +S 
Sbjct: 569 EKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFC---QSG 625

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           ++  A +++  M+++G  P   T+  ++  L
Sbjct: 626 NVEKAIEVMQLMLEKGCNPDAATYFSLMRSL 656



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 107/389 (27%), Positives = 177/389 (45%), Gaps = 6/389 (1%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           SP    H   L A  +       L H    +   PT  T+ I+        + D A ++ 
Sbjct: 56  SPDVITHNTILKAYCQIGDLDRALSHFRGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLL 115

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLV 220
             M +  C      +N ++  LCK  K++ A N+ K+   +    DVI+Y  +  G C  
Sbjct: 116 DEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQT 175

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
              ++A +++++M + GL P+   YN +L G  +  Q+EE  +   EM +   E D  +Y
Sbjct: 176 NALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSY 235

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
            T+V      G+ + A  + + M+     P V TYN+++   CK   ++ A  + E+MVG
Sbjct: 236 NTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVG 295

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           +   P   TY  +I G      +  A   +  M      P++ TYN L+   C AG++E 
Sbjct: 296 RRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEE 355

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE-MVDRGFMPRKFTFN 459
             EL E M    C P++ TY+IL++ +    K DD     +LL+E M++RG  P   TFN
Sbjct: 356 AHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDD----ARLLLEMMLERGCQPNLVTFN 411

Query: 460 RVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            +++G    G      ++L L       P
Sbjct: 412 TMIDGFCKAGKVDEGHKVLELMKEVSCTP 440



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 102/233 (43%), Gaps = 7/233 (3%)

Query: 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319
           E + FF E      +    TY  ++ GF   G  K    + + M+     P V T+N ++
Sbjct: 7   EGYSFFRERFSDPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTIL 66

Query: 320 QVLCKKDSVENAILVFEEMVGKGYM-PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           +  C+   ++ A+  F    GK +  P + TY ++I GLC    ++ A + +  M   +C
Sbjct: 67  KAYCQIGDLDRALSHFR---GKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDC 123

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
            P+   YN LI   C  G+I+    + + M    C+P++ TY  LI         D+   
Sbjct: 124 HPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDE--- 180

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           A KL+ +M + G  P    +N +LNGL          ++L      GR P  F
Sbjct: 181 ARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTF 233


>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
 gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
          Length = 545

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/454 (26%), Positives = 215/454 (47%), Gaps = 11/454 (2%)

Query: 29  SPAPLPPAAADPAA---LASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALK 85
           S  PLPPA  +  A   L  ++ +      + ++L        P LV ++I R+ +    
Sbjct: 26  SHRPLPPAEIERLAEIILRQVVDSKRAGEGIEKSLGLYGDILVPDLVGKVIHRIPDPN-T 84

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           A   F        + H+  + ++ + +  + R                  P + ++  + 
Sbjct: 85  AWEVFQWAGKQSKFTHNRFTCNNLLSVYVKARRVEDAHLFFQSHMKNVFEPDEVSYNTLM 144

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA 205
             +  AG   +A+ +F  M + G    L S N +L  LC   K+  A+ +FK   G F  
Sbjct: 145 NGFFKAGDVKKALALFGEMKDSGI-AVLRSHNIVLRGLCSGGKISMAWEVFKDMSGIFSP 203

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           ++ISY ++ +G C  ++ +KA+ + K+MVD+ + P++ TY  ++ G  +  +++EA+  F
Sbjct: 204 NLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLF 263

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL-PSVATYNAMIQVLCK 324
            E + + C   VVTY T++ G    G I+ A  ++D MV    L P + TY+A+I  L  
Sbjct: 264 EEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALINGLNL 323

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK-DDECEPNVQ 383
            +  E A  ++EEM+  G  P+  TYN ++ GLC +G  ++A+E   +M   + C+PNV 
Sbjct: 324 SNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCDPNVI 383

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
           TY +LI  FC    +   ++L ++M     LP+  T+  +I  +    + D+       L
Sbjct: 384 TYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDE----AHEL 439

Query: 444 IEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
            E + +   P    FN +L G   I     AK++
Sbjct: 440 FESIGKTCKPDSVLFNTMLAGYCKITRIDDAKKL 473



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 172/339 (50%), Gaps = 14/339 (4%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           W +   M  +   P   ++ I+ +    + K D+A+ +F  M +      + ++  ++D 
Sbjct: 191 WEVFKDMSGI-FSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDG 249

Query: 183 LCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMV-DRGLNP 240
           L K+++V++AY+LF+  R K     V++YN + +G C   R   AL +  +MV +  L P
Sbjct: 250 LGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKP 309

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           ++ TY+ ++ G   + + E+A+  + EM    C  DVVTY T++ G    G   +A  +F
Sbjct: 310 DMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIF 369

Query: 301 DGMVNGGVL-PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
             M  G V  P+V TY  +I   CK D + +A+ + +EM G+  +P++ T+  VI+ LC 
Sbjct: 370 RKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCK 429

Query: 360 TGEMERA---LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
              ++ A    E +G+     C+P+   +N ++  +C    I+   +L ++M    C P 
Sbjct: 430 ESRIDEAHELFESIGKT----CKPDSVLFNTMLAGYCKITRIDDAKKLHDRMLDSGCAPT 485

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
           L TY  L++      +  D L+   +  EM++ GF P +
Sbjct: 486 LATYTALVTGFCRTGRYSDALI---MYHEMIEMGFPPER 521



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 150/307 (48%), Gaps = 4/307 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S+   ID   + R      TL  +M   ++ P   T+  + +      +   A  +F   
Sbjct: 207 SYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEA 266

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKR 222
              GC  ++ ++NT++D LCK  ++E A  L+   V     K D+ +Y+ + NG  L  R
Sbjct: 267 RAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALINGLNLSNR 326

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK-KRKCEIDVVTYT 281
             KA E+ +EM+D G +P++ TYN +L G  ++G  ++A   F +M     C+ +V+TYT
Sbjct: 327 GEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCDPNVITYT 386

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
            ++  F  V  +  A  +   M    +LP   T+  +IQ LCK+  ++ A  +FE  +GK
Sbjct: 387 VLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFES-IGK 445

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
              P+S  +N ++ G C    ++ A +   RM D  C P + TY  L+  FC  G     
Sbjct: 446 TCKPDSVLFNTMLAGYCKITRIDDAKKLHDRMLDSGCAPTLATYTALVTGFCRTGRYSDA 505

Query: 402 LELFEKM 408
           L ++ +M
Sbjct: 506 LIMYHEM 512



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 156/322 (48%), Gaps = 14/322 (4%)

Query: 167 HGCRQSLNSFNTIL--DLLCKE-KKVEKAYNLFKVFR-----GKFKADVISYNVIANGWC 218
            G  +SL  +  IL  DL+ K   ++      ++VF+      KF  +  + N + + + 
Sbjct: 54  EGIEKSLGLYGDILVPDLVGKVIHRIPDPNTAWEVFQWAGKQSKFTHNRFTCNNLLSVYV 113

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
             +R   A    +  +     P+  +YN ++ G+F+AG +++A   F EMK     + + 
Sbjct: 114 KARRVEDAHLFFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALFGEMKDSGIAV-LR 172

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           ++  ++ G    G+I  A  VF  M +G   P++ +Y  MI  LCK   V+ AI +F++M
Sbjct: 173 SHNIVLRGLCSGGKISMAWEVFKDM-SGIFSPNLISYTIMIDGLCKSRKVDKAITLFKQM 231

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
           V K   P+  TY  +I GL     ++ A +     +   C P V TYN +I   C  G I
Sbjct: 232 VDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRI 291

Query: 399 ERGLELFEKMGSGVCL-PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           E  L L++ M     L P++ TY+ LI+ + +  + +    A +L  EM+D G  P   T
Sbjct: 292 ENALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEK---AYELYEEMLDTGCSPDVVT 348

Query: 458 FNRVLNGLLLIGNQGLAKEILR 479
           +N +L+GL   G +  A EI R
Sbjct: 349 YNTLLDGLCKSGCEDKAMEIFR 370



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 133/263 (50%), Gaps = 8/263 (3%)

Query: 96  HPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRM-KSLSLGPTQKTFAIIAERYVSAGKA 154
           HPT      +++  ID   +        TL   M +   L P   T++ +      + + 
Sbjct: 272 HPTVV----TYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALINGLNLSNRG 327

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKF-KADVISYNV 212
           ++A +++  M + GC   + ++NT+LD LCK    +KA  +F K+  G     +VI+Y V
Sbjct: 328 EKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCDPNVITYTV 387

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           + + +C V R   A+++ KEM  R L P+  T+  V++   +  +I+EA   F  + K  
Sbjct: 388 LIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFESIGK-T 446

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
           C+ D V + T++ G+  +  I  A+ + D M++ G  P++ATY A++   C+     +A+
Sbjct: 447 CKPDSVLFNTMLAGYCKITRIDDAKKLHDRMLDSGCAPTLATYTALVTGFCRTGRYSDAL 506

Query: 333 LVFEEMVGKGYMPNSTTYNVVIR 355
           +++ EM+  G+ P      +V R
Sbjct: 507 IMYHEMIEMGFPPERHLAELVDR 529


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 200/404 (49%), Gaps = 11/404 (2%)

Query: 81  NHALKALHFFNILS--YHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGP 136
           N   +AL  F+ +   Y  ++   P   S+   ID   + +     +    RM+++   P
Sbjct: 194 NRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAP 253

Query: 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF 196
              T++ + +      +    +++ L M E G   ++  FN +L  L K  + EKA   F
Sbjct: 254 NVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFF 313

Query: 197 -KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
            ++ +   K +V++YNV  +G C   R ++A  +L EMV+  + P++ TY+ ++ G+ +A
Sbjct: 314 ERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKA 373

Query: 256 GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
           G++++A   F  M   +C    VT+ T++HGF    + + A  V + MVN G +P + TY
Sbjct: 374 GRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTY 433

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           N ++  +C  DSVE+A+ ++ +M  K   P+  TY  +I+ LC    ++ A EF+  M+ 
Sbjct: 434 NVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEA 493

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
           D   PN    + L+   C  GE++    + + +    C P  +T+ IL+  +++RKK + 
Sbjct: 494 DNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYLRKKWE- 552

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
              A KLL      GF+    T++  +  +   G    A E++ 
Sbjct: 553 --AASKLL---RSPGFVADAATYSLCVAEICKAGKPDEAVEVIE 591



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 113/430 (26%), Positives = 214/430 (49%), Gaps = 17/430 (3%)

Query: 68  TPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVH 127
           TP++  ++++++ +  + A  FF      P + H+  ++  A+ L A ++  R      H
Sbjct: 42  TPEVAGRVLQQVEDPDV-AWTFFQWAGNKPGFQHN--AYTCAVLLNAFVKAKR--HEEAH 96

Query: 128 RMKSLSLGP----TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           R+    L P     +  +  +   +  AG+ D+A ++   M E G +  +   +T++  L
Sbjct: 97  RLLKEELEPLCFPNEIMYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGL 156

Query: 184 CKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR-----GL 238
           C++ ++++A   FK    +   +VI+YN + NG C   R ++ALE+  +M  R     G 
Sbjct: 157 CRKGRIDEALEQFKSMGEECSPNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGC 216

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
            P++ +Y+ V+    +A ++++A+ +F  M+   C  +VVTY++++ G   V        
Sbjct: 217 EPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLE 276

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
           +   M   G   ++  +NAM+  L K D  E A   FE ++  G  PN  TYNV + GLC
Sbjct: 277 LLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLC 336

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLD 418
             G ++ A   +  M + +  P+V TY+ +I  FC AG +++  ++F +M    C+P+  
Sbjct: 337 KAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPV 396

Query: 419 TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           T+  L+      KKS +   A ++  +MV+ GF+P   T+N +++ +    +   A EI 
Sbjct: 397 TFMTLLHGFSEHKKSRE---AFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIY 453

Query: 479 RLQSRCGRLP 488
               R  R P
Sbjct: 454 HKMKRKKRQP 463



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 104/421 (24%), Positives = 171/421 (40%), Gaps = 67/421 (15%)

Query: 73  DQIIKRLW--NHALKALHFF----------NILSYHPTYAHSPSSFDHAIDLAARLRD-Y 119
           + ++  LW  +   KA  FF          N+++Y+           H +  A R+ + Y
Sbjct: 294 NAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAV--------HGLCKAGRVDEAY 345

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
           R +  +V       + P   T++ I + +  AG+ D+A  +F  M  H C     +F T+
Sbjct: 346 RILLEMVES----KVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTL 401

Query: 180 LDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           L    + KK  +A+ + + +    F   + +YNV+ +  C       ALE+  +M  +  
Sbjct: 402 LHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKR 461

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV----GEIK 294
            P+  TY  +++   RA +++EA  F   M+      +VV    I H    V    GE+ 
Sbjct: 462 QPDCNTYAPLIQCLCRARRVDEAKEFLDVMEAD----NVVPNGAICHALVEVLCKQGEVD 517

Query: 295 RARNVFDGMVNGGVLP--------------------------------SVATYNAMIQVL 322
            A +V D +V  G  P                                  ATY+  +  +
Sbjct: 518 EACSVLDNVVEVGCQPLGETFKILVEELYLRKKWEAASKLLRSPGFVADAATYSLCVAEI 577

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
           CK    + A+ V E+MV KG  P+  TY  V+R LC    +E A+    +M    C P +
Sbjct: 578 CKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEKMASRGCAPGL 637

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
            TY +LI   C A   +    +FE M +    P   T   L SS        DLLV  ++
Sbjct: 638 VTYTLLIGEACSADMADEAFRIFEAMVAAGFTPQAQTMRTL-SSCLRDAGYQDLLVRQRI 696

Query: 443 L 443
           +
Sbjct: 697 M 697


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 109/374 (29%), Positives = 188/374 (50%), Gaps = 44/374 (11%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           PT  +F I+       GK ++A  I   M   G   ++ ++NT++D  CK  K+ K Y  
Sbjct: 161 PTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKA 220

Query: 196 FKVFRGKFKADVI-----SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250
             + + + +AD I     ++N++ +G+C  K  + A++V  EM  +G+ PN+ TYN ++ 
Sbjct: 221 DAILK-EMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLIN 279

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
           G    G++ EA     +M     + +++T+  +++GF     +K+A  +FD M   G+ P
Sbjct: 280 GLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITP 339

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           +V TYN +I   CK +++E+A  ++  M+GKG  P+ +TYN +I GLC  G++E A   V
Sbjct: 340 NVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLV 399

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG---------------SGVC-- 413
             M     + ++ TYNILI   C+ GE+++ L L ++M                 G C  
Sbjct: 400 SEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKE 459

Query: 414 ------------------LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
                             L N+ TYN+LI     + K +D   A  LL EM+++G +P +
Sbjct: 460 GNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLED---ANGLLNEMLEKGLIPNR 516

Query: 456 FTFNRVLNGLLLIG 469
            T+  V   ++  G
Sbjct: 517 MTYEIVTEEMMEKG 530



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 172/320 (53%), Gaps = 7/320 (2%)

Query: 172 SLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNK---AL 227
           +L SFN +++ LCK  K+ KA ++ +  + +   A+VI+YN + +G+C + +  K   A 
Sbjct: 162 TLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKAD 221

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
            +LKEM   G+ PN  T+NI++ G+ +   +  A + F EM ++  + +VVTY ++++G 
Sbjct: 222 AILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGL 281

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
              G++  A  + D MVN  + P++ T+NA++   CK   V+ A  +F++M  +G  PN 
Sbjct: 282 CNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNV 341

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
           TTYN++I   C    ME A      M      P+V TYN LI   C  G++E    L  +
Sbjct: 342 TTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSE 401

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467
           M +     +L TYNILI S+  + +    L   +LL EM  +G  P + T+N +++G   
Sbjct: 402 MDTKHLKADLITYNILIDSLCNKGEMKKAL---RLLDEMCRKGLKPSQLTYNTMIDGYCK 458

Query: 468 IGNQGLAKEILRLQSRCGRL 487
            GN   A  +     + GRL
Sbjct: 459 EGNLRAALNLRSQMEKVGRL 478



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 168/331 (50%), Gaps = 20/331 (6%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            ++  M++  + P + TF I+ + +        A+K+F  M+  G + ++ ++N++++ L
Sbjct: 222 AILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGL 281

Query: 184 CKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           C   KV +A  L  ++     K ++I++N + NG+C  K   +A E+  +M  +G+ PN+
Sbjct: 282 CNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNV 341

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
           TTYNI++  Y +   +E+A+  +  M  +    DV TY  ++ G    G+++ ARN+   
Sbjct: 342 TTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSE 401

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M    +   + TYN +I  LC K  ++ A+ + +EM  KG  P+  TYN +I G C  G 
Sbjct: 402 MDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGN 461

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           +  AL    +M+      NV TYN+LI+ FC   ++E    L  +M     +PN  TY I
Sbjct: 462 LRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEI 521

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
           +                     EM+++GF+P
Sbjct: 522 VTE-------------------EMMEKGFVP 533



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 105/339 (30%), Positives = 172/339 (50%), Gaps = 15/339 (4%)

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCL 219
           F    ++G + S+ S N ++  L K  ++     ++K + R + +  +IS+N++ NG C 
Sbjct: 116 FKRASDYGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCK 175

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR---FFLEMKKRKCEID 276
           V + NKA +++++M  RG++ N+ TYN ++ GY + G+I + ++      EM+      +
Sbjct: 176 VGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPN 235

Query: 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE 336
            VT+  ++ GF     +  A  VF  M   GV P+V TYN++I  LC    V  A  + +
Sbjct: 236 EVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRD 295

Query: 337 EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
           +MV     PN  T+N ++ G C    +++A E    M      PNV TYNILI  +C   
Sbjct: 296 QMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDE 355

Query: 397 EIERGLELFEKM-GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
            +E    L+  M G GVC P++ TYN LI+ +    +  DL  A  L+ EM  +      
Sbjct: 356 NMEDAFALYRIMLGKGVC-PDVSTYNCLIAGLC---RKGDLEAARNLVSEMDTKHLKADL 411

Query: 456 FTFNRVLNGLLLIGNQGLAKEILRL---QSRCGRLPRQF 491
            T+N +++ L    N+G  K+ LRL     R G  P Q 
Sbjct: 412 ITYNILIDSLC---NKGEMKKALRLLDEMCRKGLKPSQL 447



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 137/278 (49%), Gaps = 6/278 (2%)

Query: 190 EKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL 249
           E+   L  V    F A+ I  +++   +    RT    E  K   D GL  ++T+ N ++
Sbjct: 76  EQTQILLSVSGDSFCANSIIVDILVWAYAKNLRTRLGFEAFKRASDYGLKLSVTSCNPLM 135

Query: 250 KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
            G  + G+I +    + EM +R+ E  ++++  +++G   VG++ +A ++ + M   GV 
Sbjct: 136 SGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVS 195

Query: 310 PSVATYNAMIQVLCKKDSVE---NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
            +V TYN +I   CK   +     A  + +EM   G  PN  T+N++I G C    +  A
Sbjct: 196 ANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAA 255

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
           ++    M     +PNV TYN LI   C+ G++     L ++M +    PN+ T+N L++ 
Sbjct: 256 MKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNG 315

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
            F + K   +  AG+L  +M  +G  P   T+N +++ 
Sbjct: 316 -FCKNKM--VKQAGELFDDMPKQGITPNVTTYNILIDA 350



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 108/228 (47%), Gaps = 17/228 (7%)

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
           +    L   M    + P   T+ I+ + Y      + A  ++  M   G    ++++N +
Sbjct: 323 KQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCL 382

Query: 180 LDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           +  LC++  +E A NL      K  KAD+I+YN++ +  C      KAL +L EM  +GL
Sbjct: 383 IAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGL 442

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
            P+  TYN ++ GY + G +  A     +M+K     +V TY  ++ GF    +++ A  
Sbjct: 443 KPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANG 502

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
           + + M+  G++P+  TY                 +V EEM+ KG++P+
Sbjct: 503 LLNEMLEKGLIPNRMTYE----------------IVTEEMMEKGFVPD 534



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 3/155 (1%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           S+++  I    R  D      LV  M +  L     T+ I+ +   + G+  +A+++   
Sbjct: 377 STYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDE 436

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR--GKFKADVISYNVIANGWCLVK 221
           M   G + S  ++NT++D  CKE  +  A NL       G+  A+V +YNV+  G+C   
Sbjct: 437 MCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRL-ANVATYNVLIKGFCKKD 495

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256
           +   A  +L EM+++GL PN  TY IV +     G
Sbjct: 496 KLEDANGLLNEMLEKGLIPNRMTYEIVTEEMMEKG 530


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 96/301 (31%), Positives = 163/301 (54%), Gaps = 6/301 (1%)

Query: 167 HGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNK 225
           + C     ++ +++  LCK K++E+A   L K+    F  DV +Y  + +  C+  R ++
Sbjct: 5   NSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHE 64

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
           A + L+EM +R L PN+ TY +++ G  + G+++EA     +M+K KC    VTY +++ 
Sbjct: 65  ARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRK-KCVPTAVTYNSLIS 123

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
           G         A ++ + MV  G +P + TY  +I   CK    ++A+ VFE++V +G+ P
Sbjct: 124 GLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRP 183

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRM-KDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           +  TY+ +I GLC  G ++ A++  GRM K   C PN  TYN LI  FC  G+++  + L
Sbjct: 184 DVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNL 243

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
            E+M      P++ TY  L++      + DD   A  LL +M  +G  P   TF  +++G
Sbjct: 244 LERMAETGSSPDVVTYTTLMNGFCKLARLDD---AYDLLNQMTRKGLTPDVVTFTSLMDG 300

Query: 465 L 465
           L
Sbjct: 301 L 301



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 110/432 (25%), Positives = 207/432 (47%), Gaps = 49/432 (11%)

Query: 76  IKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLG 135
           +KRL   AL  L       +HP   ++ ++  HA+ +  RL + R     +  M + +L 
Sbjct: 24  VKRL-EQALIFLGKMVSKGFHPD-VYTYTAVIHALCVENRLHEARK---FLEEMANRNLT 78

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+ ++ +     G+ D AV +   M +  C  +  ++N+++  LCK ++  +AY+L
Sbjct: 79  PNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK-CVPTAVTYNSLISGLCKAERASEAYDL 137

Query: 196 FK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP------------- 240
            +  V+ G    D+ +Y  +  G+C  K+++ AL V +++V RG  P             
Sbjct: 138 LEEMVYSGCI-PDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLC 196

Query: 241 -----------------------NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
                                  N  TYN ++ G+ R G+++EA      M +     DV
Sbjct: 197 KEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDV 256

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           VTYTT+++GF  +  +  A ++ + M   G+ P V T+ +++  LC+++ + +A+ +  E
Sbjct: 257 VTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGE 316

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M  K   P   TYN ++ G C   ++E A +F+  +++ +C PNV ++NI+IR  C    
Sbjct: 317 MRRKSCSPTVYTYNTILDGYCRANQLEEARKFM--LEEMDCPPNVVSFNIMIRGLCKVNR 374

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
               +EL E+     C P++  Y  +I  +   KK D+     + ++E  + G +P   T
Sbjct: 375 SSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLE--EPGCLPNSIT 432

Query: 458 FNRVLNGLLLIG 469
           ++ ++ GL   G
Sbjct: 433 YSTLITGLCNAG 444



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 166/319 (52%), Gaps = 12/319 (3%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG-CRQSLNSFNTILDLLCKEKKVEKAYN 194
           P   T++ + +     G+   A+ +F  M + G C  +  ++N+++   C+  K+++A N
Sbjct: 183 PDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMN 242

Query: 195 LF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
           L  ++       DV++Y  + NG+C + R + A ++L +M  +GL P++ T+  ++ G  
Sbjct: 243 LLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLC 302

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
           R  ++ +A     EM+++ C   V TY TI+ G+    +++ AR     +      P+V 
Sbjct: 303 RENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFM--LEEMDCPPNVV 360

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           ++N MI+ LCK +    A+ + EE   +   P+   Y  VI GLC   +++ A     +M
Sbjct: 361 SFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKM 420

Query: 374 KDDE-CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
            ++  C PN  TY+ LI   C+AG ++R     EK     C+PN+ TYN+LI +     +
Sbjct: 421 LEEPGCLPNSITYSTLITGLCNAGMLDRARGYIEKG----CVPNIGTYNLLIDAFRKANR 476

Query: 433 SDDLLVAGKLLIEMVDRGF 451
            +D   A +LL +MV RGF
Sbjct: 477 DED---ARELLDDMVQRGF 492



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 153/303 (50%), Gaps = 20/303 (6%)

Query: 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH 167
            AIDL  R+            +KS S  P   T+  +   +   GK D A+ +   M E 
Sbjct: 203 EAIDLFGRM------------IKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAET 250

Query: 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKA 226
           G    + ++ T+++  CK  +++ AY+L  ++ R     DV+++  + +G C   R + A
Sbjct: 251 GSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDA 310

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
           + +L EM  +  +P + TYN +L GY RA Q+EEA +F LE  +  C  +VV++  ++ G
Sbjct: 311 VHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLE--EMDCPPNVVSFNIMIRG 368

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK-GYMP 345
              V     A  + +        P V  Y  +I  LC++  V+ A  V+ +M+ + G +P
Sbjct: 369 LCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLP 428

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           NS TY+ +I GLC+ G ++RA  ++    +  C PN+ TYN+LI  F  A   E   EL 
Sbjct: 429 NSITYSTLITGLCNAGMLDRARGYI----EKGCVPNIGTYNLLIDAFRKANRDEDARELL 484

Query: 406 EKM 408
           + M
Sbjct: 485 DDM 487



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 170/357 (47%), Gaps = 6/357 (1%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           +M S    P   T+  +        +   A K    M       ++ ++  ++D LCK  
Sbjct: 36  KMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGG 95

Query: 188 KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           +V++A  L    R K     ++YN + +G C  +R ++A ++L+EMV  G  P++ TY  
Sbjct: 96  RVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTT 155

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV-NG 306
           ++ G+ ++ + ++A R F ++  R    DVVTY+ ++ G    G +K A ++F  M+ +G
Sbjct: 156 LITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSG 215

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
             +P+  TYN++I   C+   ++ A+ + E M   G  P+  TY  ++ G C    ++ A
Sbjct: 216 SCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDA 275

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
            + + +M      P+V T+  L+   C    +   + +  +M    C P + TYN ++  
Sbjct: 276 YDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDG 335

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
                +++ L  A K ++E +D    P   +FN ++ GL  +     A E++    R
Sbjct: 336 YC---RANQLEEARKFMLEEMD--CPPNVVSFNIMIRGLCKVNRSSEAMELVEEARR 387



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/211 (34%), Positives = 110/211 (52%), Gaps = 7/211 (3%)

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
           C  D VTYT+++ G   V  +++A      MV+ G  P V TY A+I  LC ++ +  A 
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEAR 66

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
              EEM  +   PN  TY V+I GLC  G ++ A+  + +M+  +C P   TYN LI   
Sbjct: 67  KFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMR-KKCVPTAVTYNSLISGL 125

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
           C A       +L E+M    C+P++ TY  LI+     KKSDD L   ++  ++V RGF 
Sbjct: 126 CKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDAL---RVFEQLVARGFR 182

Query: 453 PRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           P   T++ +++GL     +G  KE + L  R
Sbjct: 183 PDVVTYSCLIDGLC---KEGRLKEAIDLFGR 210



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 123/231 (53%), Gaps = 9/231 (3%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
           ARL D    + L+++M    L P   TF  + +      +   AV I   M    C  ++
Sbjct: 270 ARLDD---AYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTV 326

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
            ++NTILD  C+  ++E+A   F +       +V+S+N++  G C V R+++A+E+++E 
Sbjct: 327 YTYNTILDGYCRANQLEEARK-FMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEA 385

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM-KKRKCEIDVVTYTTIVHGFGVVGE 292
             R  NP++  Y  V+ G  R  +++EA R + +M ++  C  + +TY+T++ G    G 
Sbjct: 386 RRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAGM 445

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + RAR    G +  G +P++ TYN +I    K +  E+A  + ++MV +G+
Sbjct: 446 LDRAR----GYIEKGCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQRGF 492


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/360 (30%), Positives = 186/360 (51%), Gaps = 6/360 (1%)

Query: 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH 167
           H      RL D + V  L   + S  + P   T+  +   Y   G    A+++   M   
Sbjct: 355 HGFVTHGRLDDAKAV--LSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNK 412

Query: 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKA 226
           GC+ ++ S+  ++D  CK  K+++AYNL         K + + +N + + +C   R  +A
Sbjct: 413 GCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEA 472

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
           +E+ +EM  +G  P++ T+N ++ G     +I+ A     +M       + VTY T+++ 
Sbjct: 473 VEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINA 532

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
           F   GEIK AR + + MV  G L    TYN++I+ LC+   V+ A  +FE+M+  G +P+
Sbjct: 533 FLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPS 592

Query: 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
           S + N++I GLC +G +E A+EF   M      P++ T+N LI   C AG IE GL +F 
Sbjct: 593 SISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFR 652

Query: 407 KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
           K+ +    P+  TYN L+S +    K   +  A  LL E ++ GF+P   T++ +L  L+
Sbjct: 653 KLQAEGIPPDTVTYNTLMSWLC---KGGFVYDACLLLDEGIEDGFVPNDRTWSILLQSLV 709



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 164/311 (52%), Gaps = 1/311 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++  M++    P   ++ I+ + +   GK D A  +   M   G + +   FN ++   C
Sbjct: 405 VLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFC 464

Query: 185 KEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           KE ++ +A  +F+   R   K DV ++N + +G C V     AL +L++M+  G+  N  
Sbjct: 465 KEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTV 524

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN ++  + R G+I+EA +   EM  +   +D +TY +++ G    GE+ +AR++F+ M
Sbjct: 525 TYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKM 584

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           +  G++PS  + N +I  LC+   VE A+   +EMV +G  P+  T+N +I GLC  G +
Sbjct: 585 LRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRI 644

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           E  L    +++ +   P+  TYN L+ + C  G +     L ++      +PN  T++IL
Sbjct: 645 EDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNDRTWSIL 704

Query: 424 ISSMFVRKKSD 434
           + S+  ++  D
Sbjct: 705 LQSLVPQETLD 715



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 113/438 (25%), Positives = 199/438 (45%), Gaps = 46/438 (10%)

Query: 87  LHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAE 146
           L   N+ S  PT+     S++  +++      ++    + + M S  + PT  TF ++ +
Sbjct: 164 LEMRNVYSCEPTF----KSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMK 219

Query: 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKA 205
              +  + D A+ +   M +HGC  +   + T++  L K  +V +A  L + +F      
Sbjct: 220 ALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVP 279

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           D  ++N +  G C   R N+A +++  M+ RG  P+  TY  ++ G  + G+++ A   F
Sbjct: 280 DAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLF 339

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG-GVLPSVATYNAMIQVLCK 324
             + K       V + T++HGF   G +  A+ V   MV   G++P V TYN++I    K
Sbjct: 340 YRIPKPTS----VIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWK 395

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
           K  V  A+ V  +M  KG  PN  +Y +++ G C  G+++ A   +  M  D  +PN   
Sbjct: 396 KGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVG 455

Query: 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM----------------- 427
           +N LI  FC    I   +E+F +M    C P++ T+N LIS +                 
Sbjct: 456 FNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMI 515

Query: 428 -----------------FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
                            F+R+   ++  A KL+ EMV +G +  + T+N ++ GL   G 
Sbjct: 516 SEGVVANTVTYNTLINAFLRRG--EIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGE 573

Query: 471 QGLAKEILRLQSRCGRLP 488
              A+ +     R G +P
Sbjct: 574 VDKARSLFEKMLRDGLVP 591



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/414 (24%), Positives = 176/414 (42%), Gaps = 37/414 (8%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           ++  F+       Y HS   +   I       +++T+  L+ +MK   +   +  F  I 
Sbjct: 88  SMELFSWTGSQKGYRHSFDVYQVLIGKLGSNGEFKTIDRLLMQMKDEGIVFKESLFISIM 147

Query: 146 ERYVSAGKADRAVKIFLSMHE-HGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKF 203
             Y  AG   +  ++ L M   + C  +  S+N +L++L      + A N+F  +   K 
Sbjct: 148 RDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKI 207

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
              + ++ V+    C V   + AL VL++M   G  PN   Y  ++    +  ++ EA +
Sbjct: 208 PPTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQ 267

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
              EM    C  D  T+  ++ G      I  A  + + M+  G  P   TY  ++  LC
Sbjct: 268 LLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLC 327

Query: 324 K-------KD------------------------SVENAILVFEEMVGK-GYMPNSTTYN 351
           K       KD                         +++A  V  +MV   G +P+  TYN
Sbjct: 328 KIGRVDAAKDLFYRIPKPTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYN 387

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
            +I G    G +  ALE +  M++  C+PNV +Y IL+  FC  G+I+    L  +M + 
Sbjct: 388 SLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSAD 447

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
              PN   +N LIS+     K   +  A ++  EM  +G  P  +TFN +++GL
Sbjct: 448 GLKPNTVGFNCLISAFC---KEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGL 498



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 147/331 (44%), Gaps = 39/331 (11%)

Query: 73  DQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAI--DLAARLRDYRTVWTLVHRMK 130
           + +I   W   L  L    +L         P+ + + I  D   +L      + L++ M 
Sbjct: 387 NSLIYGYWKKGLVGLAL-EVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMS 445

Query: 131 SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190
           +  L P    F  +   +    +   AV+IF  M   GC+  + +FN+++  LC+  +++
Sbjct: 446 ADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIK 505

Query: 191 KA------------------YN-LFKVF--RGKFKA---------------DVISYNVIA 214
            A                  YN L   F  RG+ K                D I+YN + 
Sbjct: 506 HALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLI 565

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
            G C     +KA  + ++M+  GL P+  + NI++ G  R+G +EEA  F  EM  R   
Sbjct: 566 KGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGST 625

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
            D+VT+ ++++G    G I+    +F  +   G+ P   TYN ++  LCK   V +A L+
Sbjct: 626 PDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLL 685

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            +E +  G++PN  T++++++ L     ++R
Sbjct: 686 LDEGIEDGFVPNDRTWSILLQSLVPQETLDR 716


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 180/346 (52%), Gaps = 7/346 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV-EKAYN 194
           P   T+  + + Y    + D A     SM   G   +L +FN I++ LC++ ++ E +  
Sbjct: 16  PNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGRLKETSEV 75

Query: 195 LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           L ++ R  +  D ++YN + NG+C     ++AL +  EMV  GL+PN+ TY  ++    +
Sbjct: 76  LVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCK 135

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
           AG +  A  FF +M  R    +  TYTTI++GF   G +  A  V + M   G +PS+ T
Sbjct: 136 AGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVT 195

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YNA+I   C    +E AI + ++MVGKG +P+  +Y+ +I G     E++RA +    M 
Sbjct: 196 YNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMI 255

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
                P+  TY+ LI+  C+   +    ++F++M +    P+  TY  LI++     K  
Sbjct: 256 GKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYC---KEG 312

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           DL  A  L  EM+ +GF+P   T+N ++NGL     Q  +KE  RL
Sbjct: 313 DLNKALHLHDEMIQKGFLPDAVTYNVLINGL---NKQARSKEARRL 355



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 178/359 (49%), Gaps = 4/359 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   +L+     +  +  M    L P   TF +I       G+     ++ + M
Sbjct: 20  TYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGRLKETSEVLVEM 79

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
              G      ++NT+++  CKE    +A  L  ++ R     +V++Y  + N  C     
Sbjct: 80  SRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNL 139

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           N+A+E   +M  RGL PN  TY  ++ G+ + G ++EA+R   EM +      +VTY  +
Sbjct: 140 NRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNAL 199

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++G  V+G ++ A  +   MV  GVLP V +Y+ +I    +   ++ A  +  EM+GK  
Sbjct: 200 INGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSV 259

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
           +P++ TY+ +I+GLC    +  A +    M   +  P+  TY  LI  +C  G++ + L 
Sbjct: 260 LPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALH 319

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           L ++M     LP+  TYN+LI+ +  + +S +   A +LL+++     +P   T+N ++
Sbjct: 320 LHDEMIQKGFLPDAVTYNVLINGLNKQARSKE---ARRLLLKLFYDDSIPSAVTYNTLI 375



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 98/396 (24%), Positives = 194/396 (48%), Gaps = 19/396 (4%)

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           Y     +++  ++   +  ++     L   M    L P   T+  +      AG  +RA+
Sbjct: 84  YVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAM 143

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGW 217
           + F  MH  G   +  ++ TI++   ++  +++AY +  ++ R  F   +++YN + NG 
Sbjct: 144 EFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGH 203

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           C++ R  +A+ +L++MV +G+ P++ +Y+ ++ G+ R  +++ A++  +EM  +    D 
Sbjct: 204 CVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDA 263

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           VTY++++ G      +  A ++F  M+   + P   TY  +I   CK+  +  A+ + +E
Sbjct: 264 VTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDE 323

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI-------- 389
           M+ KG++P++ TYNV+I GL      + A   + ++  D+  P+  TYN LI        
Sbjct: 324 MIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIENCCNIEF 383

Query: 390 -------RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
                  + FC  G ++   ++FE M +    PN   YN++I       +  ++L A KL
Sbjct: 384 KSAVALVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHG---HCRIGNVLKAYKL 440

Query: 443 LIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
             EMV   F+P   T   ++  L   G  G   E++
Sbjct: 441 YKEMVHVDFVPHTVTVLALVKALFTEGMDGELNEVI 476



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 121/240 (50%), Gaps = 3/240 (1%)

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
            L   KEM   G  PN+ TYN ++ GY +  + +EA+ F   M  +  E +++T+  I++
Sbjct: 2   GLRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIIN 61

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
           G    G +K    V   M   G +P   TYN ++   CK+ +   A+++  EMV  G  P
Sbjct: 62  GLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSP 121

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           N  TY  +I  +C  G + RA+EF  +M      PN +TY  +I  F   G ++    + 
Sbjct: 122 NVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVL 181

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            +M     +P++ TYN LI+   V  + ++   A  LL +MV +G +P   +++ +++G 
Sbjct: 182 NEMTRSGFIPSIVTYNALINGHCVLGRMEE---AIGLLQDMVGKGVLPDVVSYSTIISGF 238



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 76/375 (20%), Positives = 164/375 (43%), Gaps = 21/375 (5%)

Query: 62  CPSLHWTPQLVDQIIKR-LWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYR 120
           CP+      +++   ++ L + A + L+      + P    S  +++  I+    L    
Sbjct: 155 CPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIP----SIVTYNALINGHCVLGRME 210

Query: 121 TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180
               L+  M    + P   +++ I   +    + DRA ++ + M          ++++++
Sbjct: 211 EAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLI 270

Query: 181 DLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
             LC+++++ +A ++F+ +   K   D  +Y  + N +C     NKAL +  EM+ +G  
Sbjct: 271 QGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFL 330

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEM---------------KKRKCEIDVVTYTTIV 284
           P+  TYN+++ G  +  + +EA R  L++                +  C I+  +   +V
Sbjct: 331 PDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVALV 390

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            GF + G +  A  VF+ M+N    P+ A YN +I   C+  +V  A  +++EMV   ++
Sbjct: 391 KGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVHVDFV 450

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           P++ T   +++ L   G      E +G +       + +   +L+      G ++    L
Sbjct: 451 PHTVTVLALVKALFTEGMDGELNEVIGDILRSCKLTDAELSKVLVEINQKEGNMDMVFNL 510

Query: 405 FEKMGSGVCLPNLDT 419
             +M     +P+  T
Sbjct: 511 LTEMAKDGLIPSTGT 525



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 68/156 (43%), Gaps = 3/156 (1%)

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
           F+EM   G +PN  TYN +I G C     + A  F+  M     EPN+ T+N++I   C 
Sbjct: 6   FKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCR 65

Query: 395 AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
            G ++   E+  +M     +P+  TYN L++           LV   L  EMV  G  P 
Sbjct: 66  DGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALV---LHAEMVRNGLSPN 122

Query: 455 KFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
             T+  ++N +   GN   A E        G  P +
Sbjct: 123 VVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNE 158



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 3/90 (3%)

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
           GL  F++M    CLPN+ TYN +I      K++D+   A   L  M  +G  P   TFN 
Sbjct: 2   GLRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDE---AFGFLRSMGLKGLEPNLITFNM 58

Query: 461 VLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
           ++NGL   G      E+L   SR G +P +
Sbjct: 59  IINGLCRDGRLKETSEVLVEMSRKGYVPDE 88


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/383 (29%), Positives = 183/383 (47%), Gaps = 42/383 (10%)

Query: 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
           + P   T+ I+   + S G+  + +  F  M  +GC  ++ ++NT++D  CK  ++++A+
Sbjct: 6   VSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAF 65

Query: 194 NLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
            L K    K  + ++ISYNVI NG C      +A E+L+EM  +G  P+  TYN +L GY
Sbjct: 66  GLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGY 125

Query: 253 FRAGQIEE-----------------------------------AWRFFLEMKKRKCEIDV 277
            + G   +                                   A  FF +M+ R    + 
Sbjct: 126 CKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNE 185

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
            TYTT++ GF   G +  A  + + M   G  PSV TYNA I   C  + +E A+ V +E
Sbjct: 186 RTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQE 245

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           MV KG  P+  +Y+ +I G C  GE++RA +    M +    P+  TY+ LI+  C+   
Sbjct: 246 MVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRR 305

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           +    +L ++M      P+  TY  LI++  V     DL  A  L  EM+ +GF+P   T
Sbjct: 306 LTEACDLSQEMLDMGLPPDEFTYTTLINAYCVE---GDLNKALHLHDEMIHKGFLPDAVT 362

Query: 458 FNRVLNGLLLIGNQGLAKEILRL 480
           ++ ++NGL     Q   +E  RL
Sbjct: 363 YSVLINGL---NKQARTREAKRL 382



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/359 (27%), Positives = 176/359 (49%), Gaps = 4/359 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   ++      + L+  M S  + P   ++ +I       G    A +I   M
Sbjct: 47  TYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEM 106

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
              G      ++NT+L+  CKE    +A  +  ++ R      V++Y  + N  C  +  
Sbjct: 107 GYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNL 166

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           N+A+E   +M  RGL PN  TY  ++ G+ R G + EA+R   EM +      VVTY   
Sbjct: 167 NRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAF 226

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +HG  V+  ++ A  V   MV  G+ P V +Y+ +I   C+K  ++ A  + +EMV KG 
Sbjct: 227 IHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGV 286

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P++ TY+ +I+GLC    +  A +    M D    P+  TY  LI  +C  G++ + L 
Sbjct: 287 SPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALH 346

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           L ++M     LP+  TY++LI+ +  + ++ +   A +LL +++    +P   T++ ++
Sbjct: 347 LHDEMIHKGFLPDAVTYSVLINGLNKQARTRE---AKRLLFKLIYEESVPSDVTYDTLI 402



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 180/371 (48%), Gaps = 19/371 (5%)

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
            + P+  T+  +      A   +RA++ F  M   G R +  ++ T++D   ++  + +A
Sbjct: 145 GVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEA 204

Query: 193 YNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
           Y +  ++    F   V++YN   +G C+++R  +AL V++EMV++GL P++ +Y+ ++ G
Sbjct: 205 YRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISG 264

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
           + R G+++ A++   EM ++    D VTY++++ G   +  +  A ++   M++ G+ P 
Sbjct: 265 FCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPD 324

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
             TY  +I   C +  +  A+ + +EM+ KG++P++ TY+V+I GL        A   + 
Sbjct: 325 EFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLF 384

Query: 372 RMKDDECEPNVQTYNILI---------------RYFCDAGEIERGLELFEKMGSGVCLPN 416
           ++  +E  P+  TY+ LI               + FC  G +     +FE M      P 
Sbjct: 385 KLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPG 444

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKE 476
              YN++I       +  +L  A  L  EM+  GF+P   T   ++  L   G      E
Sbjct: 445 EAVYNVIIHG---HCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEMSE 501

Query: 477 ILRLQSRCGRL 487
           ++    R  RL
Sbjct: 502 VIGDTLRSCRL 512



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 104/419 (24%), Positives = 185/419 (44%), Gaps = 31/419 (7%)

Query: 90  FNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
           F +L    +    P+  S++  I+   R    +  W ++  M      P + T+  +   
Sbjct: 65  FGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNG 124

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKAD 206
           Y   G   +A+ I   M  +G   S+ ++  +++ +CK + + +A   F   R +  + +
Sbjct: 125 YCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPN 184

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
             +Y  + +G+      N+A  +L EM + G +P++ TYN  + G+    ++EEA     
Sbjct: 185 ERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQ 244

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           EM ++    DVV+Y+TI+ GF   GE+ RA  +   MV  GV P   TY+++IQ LC+  
Sbjct: 245 EMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMR 304

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            +  A  + +EM+  G  P+  TY  +I   C  G++ +AL     M      P+  TY+
Sbjct: 305 RLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYS 364

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF-VRKKSDDLLVAG----- 440
           +LI              L  K+     +P+  TY+ LI +   +  KS   L+ G     
Sbjct: 365 VLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKG 424

Query: 441 ------KLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQFKL 493
                 ++   MV+R   P +  +N +++G                  R G LP+ F L
Sbjct: 425 LMHEADRVFESMVERNHKPGEAVYNVIIHG----------------HCRGGNLPKAFNL 467



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 143/303 (47%), Gaps = 38/303 (12%)

Query: 198 VFRGKFKADVISYNVIANGWCLV-----------------------------------KR 222
           + R +   +V +YN++  G+C V                                    R
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
            ++A  +LK M  +G+ PNL +YN+++ G  R G ++EAW    EM  +    D VTY T
Sbjct: 61  IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 120

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           +++G+   G   +A  +   MV  GV PSV TY A+I  +CK  ++  A+  F++M  +G
Sbjct: 121 LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRG 180

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
             PN  TY  +I G    G +  A   +  M +    P+V TYN  I   C    +E  L
Sbjct: 181 LRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEAL 240

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
            + ++M      P++ +Y+ +IS  F RK   +L  A ++  EMV++G  P   T++ ++
Sbjct: 241 GVVQEMVEKGLAPDVVSYSTIISG-FCRK--GELDRAFQMKQEMVEKGVSPDAVTYSSLI 297

Query: 463 NGL 465
            GL
Sbjct: 298 QGL 300



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 156/374 (41%), Gaps = 56/374 (14%)

Query: 79  LWNHALKALHFFNILSYHPTYAH---SPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLS 133
           L N   K  +F   L  H        SPS  ++   I+   + R+         +M+   
Sbjct: 121 LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRG 180

Query: 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
           L P ++T+  + + +   G  + A +I   M E G   S+ ++N  +   C  +++E+A 
Sbjct: 181 LRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEAL 240

Query: 194 NLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
            + +    K  A DV+SY+ I +G+C     ++A ++ +EMV++G++P+  TY+ +++G 
Sbjct: 241 GVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGL 300

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
               ++ EA     EM       D  TYTT+++ + V G++ +A ++ D M++ G LP  
Sbjct: 301 CEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDA 360

Query: 313 ATYN--------------------------------------------------AMIQVL 322
            TY+                                                  A+I+  
Sbjct: 361 VTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGF 420

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
           C K  +  A  VFE MV + + P    YNV+I G C  G + +A      M      P+ 
Sbjct: 421 CMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHT 480

Query: 383 QTYNILIRYFCDAG 396
            T   LI+     G
Sbjct: 481 VTVITLIKALFKEG 494



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 148/326 (45%), Gaps = 21/326 (6%)

Query: 63  PSLHWTPQLVDQIIKR-LWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRT 121
           P+      L+D   ++ L N A + L+      + P+   + ++F H   +  R+ +   
Sbjct: 183 PNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVV-TYNAFIHGHCVLERMEEALG 241

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
           V   V  M    L P   +++ I   +   G+ DRA ++   M E G      ++++++ 
Sbjct: 242 V---VQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQ 298

Query: 182 LLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
            LC+ +++ +A +L + +       D  +Y  + N +C+    NKAL +  EM+ +G  P
Sbjct: 299 GLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLP 358

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH--------------- 285
           +  TY++++ G  +  +  EA R   ++   +     VTY T++                
Sbjct: 359 DAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIK 418

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
           GF + G +  A  VF+ MV     P  A YN +I   C+  ++  A  +++EM+  G++P
Sbjct: 419 GFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVP 478

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVG 371
           ++ T   +I+ L   G  E   E +G
Sbjct: 479 HTVTVITLIKALFKEGMNEEMSEVIG 504


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 106/358 (29%), Positives = 182/358 (50%), Gaps = 5/358 (1%)

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
            + P   T+ I+     + G+ + AV +   M   GC  +  ++NT++   C+  +++ A
Sbjct: 5   GVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGA 64

Query: 193 YNLFKVFR--GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250
             +  + R  G  K +++++N + NG C   R   A +V  EMV  GL P++ +YN +L 
Sbjct: 65  ERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLS 124

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
           GY + G + E+   F EM +R    DVVT+T+++H     G +++A  +   M   G+  
Sbjct: 125 GYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRM 184

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           +  T+ A+I   CKK  +++A+L  EEM   G  P+   YN +I G C  G M+ A E +
Sbjct: 185 NEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELI 244

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
             M+    +P+V TY+ +I  +C  G ++   +L +KM     LP+  TY+ LI  +   
Sbjct: 245 REMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEE 304

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           K+ +D   A +L   M+  G  P +FT+  +++G    GN   A  +     R G LP
Sbjct: 305 KRLND---ACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLP 359



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/356 (30%), Positives = 179/356 (50%), Gaps = 6/356 (1%)

Query: 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG-CR 170
           L AR R    V  +V  M+     P   T+  +   +  AG+ D A ++   M E G  +
Sbjct: 20  LCARGRLEEAVG-VVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAK 78

Query: 171 QSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEV 229
            +L +FN++++ LCK  ++E A  +F ++ R     DV+SYN + +G+C V   +++L V
Sbjct: 79  PNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAV 138

Query: 230 LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289
             EM  RGL P++ T+  ++    +AG +E+A     +M++R   ++ VT+T ++ GF  
Sbjct: 139 FSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCK 198

Query: 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
            G +  A    + M   G+ PSV  YNA+I   CK   ++ A  +  EM  K   P+  T
Sbjct: 199 KGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVT 258

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
           Y+ +I G C  G ++ A +   +M      P+  TY+ LIR  C+   +    ELFE M 
Sbjct: 259 YSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENML 318

Query: 410 SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
                P+  TY  LI       K  ++  A  L  EM+ +G +P   T++ ++NGL
Sbjct: 319 QLGVQPDEFTYTTLIDG---HCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGL 371



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/248 (32%), Positives = 124/248 (50%), Gaps = 4/248 (1%)

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           MV  G+ PN+ TYNI+++     G++EEA     +M+   C  + VTY T+V  F   GE
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 293 IKRARNVFDGM-VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
           +  A  V   M   G   P++ T+N+M+  LCK   +E A  VF+EMV +G  P+  +YN
Sbjct: 61  LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYN 120

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
            ++ G C  G +  +L     M      P+V T+  LI   C AG +E+ + L  +M   
Sbjct: 121 TLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRER 180

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
               N  T+  LI     +   DD L+A   + EM   G  P    +N ++NG   +G  
Sbjct: 181 GLRMNEVTFTALIDGFCKKGFLDDALLA---VEEMRKCGIQPSVVCYNALINGYCKLGRM 237

Query: 472 GLAKEILR 479
            LA+E++R
Sbjct: 238 DLARELIR 245



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 147/290 (50%), Gaps = 6/290 (2%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M    L P   TF  +      AG  ++AV +   M E G R +  +F  ++D  CK+  
Sbjct: 142 MTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGF 201

Query: 189 VEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           ++ A    +  R    +  V+ YN + NG+C + R + A E+++EM  + + P++ TY+ 
Sbjct: 202 LDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYST 261

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ GY + G ++ A++   +M K+    D +TY++++ G      +  A  +F+ M+  G
Sbjct: 262 IISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLG 321

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           V P   TY  +I   CK+ +VE A+ + +EM+ KG +P+  TY+V+I GL  +   + A 
Sbjct: 322 VQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAH 381

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
             + ++  ++  P+   Y+ L+   C   E +  + L +    G C+  L
Sbjct: 382 RLLFKLYHEDPVPDNIKYDALM-LCCSKAEFKSVVALLK----GFCMKGL 426



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/345 (22%), Positives = 153/345 (44%), Gaps = 21/345 (6%)

Query: 126 VHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185
           V  M+   + P+   +  +   Y   G+ D A ++   M     +  + +++TI+   CK
Sbjct: 209 VEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCK 268

Query: 186 EKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
              ++ A+ L  K+ +     D I+Y+ +  G C  KR N A E+ + M+  G+ P+  T
Sbjct: 269 VGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFT 328

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           Y  ++ G+ + G +E+A     EM ++    DVVTY+ +++G       K A  +   + 
Sbjct: 329 YTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLY 388

Query: 305 NGGVLPSVATYN---------------AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
           +   +P    Y+               A+++  C K  ++ A  V++ M+ + +  + + 
Sbjct: 389 HEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSV 448

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
           Y+++I G C  G + +AL F  +M      PN  +   L+R   + G +       + + 
Sbjct: 449 YSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLL 508

Query: 410 SGVCLPNLDTYNILISSMFVRKKSD-DLLVAGKLLIEMVDRGFMP 453
           +   L + +    LI     RK+ + D L+   +L  M   G +P
Sbjct: 509 TCCPLADAEASKALID--LNRKEGNVDALI--DVLCGMARDGLLP 549



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/373 (21%), Positives = 159/373 (42%), Gaps = 36/373 (9%)

Query: 17  CIYRGLSPLTTTSPAPLPPAAADPAALASLILTSTDPRTLTQT-----------LHCPSL 65
           C++  L+  +  +   L P   D     SLI  +     L Q            L    +
Sbjct: 131 CLHESLAVFSEMTQRGLVP---DVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEV 187

Query: 66  HWTPQLVDQIIKR-LWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWT 124
            +T  L+D   K+   + AL A+         P+       ++  I+   +L        
Sbjct: 188 TFTA-LIDGFCKKGFLDDALLAVEEMRKCGIQPSVV----CYNALINGYCKLGRMDLARE 242

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M++  + P   T++ I   Y   G  D A ++   M + G      ++++++  LC
Sbjct: 243 LIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLC 302

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           +EK++  A  LF+ + +   + D  +Y  + +G C      KAL +  EM+ +G+ P++ 
Sbjct: 303 EEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVV 362

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY---------------TTIVHGFG 288
           TY++++ G  ++ + +EA R   ++       D + Y                 ++ GF 
Sbjct: 363 TYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFC 422

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
           + G +K A  V+  M++       + Y+ +I   C+  +V  A+   ++M+  G+ PNST
Sbjct: 423 MKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNST 482

Query: 349 TYNVVIRGLCHTG 361
           +   ++RGL   G
Sbjct: 483 STISLVRGLFEEG 495



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/249 (20%), Positives = 107/249 (42%), Gaps = 19/249 (7%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           RL D      L   M  L + P + T+  + + +   G  ++A+ +   M   G    + 
Sbjct: 306 RLND---ACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVV 362

Query: 175 SFNTILDLLCKEKKVEKAYNL-FKVFRGKFKADVISYNVIA---------------NGWC 218
           +++ +++ L K  + ++A+ L FK++      D I Y+ +                 G+C
Sbjct: 363 TYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFC 422

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
           +     +A +V + M+DR    + + Y+I++ G+ R G + +A  F  +M +     +  
Sbjct: 423 MKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNST 482

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           +  ++V G    G +  A N    ++    L       A+I +  K+ +V+  I V   M
Sbjct: 483 STISLVRGLFEEGMVVEADNAIQDLLTCCPLADAEASKALIDLNRKEGNVDALIDVLCGM 542

Query: 339 VGKGYMPNS 347
              G +P+S
Sbjct: 543 ARDGLLPSS 551


>gi|15228767|ref|NP_191806.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181319|sp|Q9LZP3.1|PP293_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g62470, mitochondrial; Flags: Precursor
 gi|7340718|emb|CAB82961.1| putative protein [Arabidopsis thaliana]
 gi|34365579|gb|AAQ65101.1| At3g62470 [Arabidopsis thaliana]
 gi|332646835|gb|AEE80356.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 599

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 212/408 (51%), Gaps = 6/408 (1%)

Query: 54  RTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLA 113
           R +   L    L  +  L+ ++++R  +    A  FF   +    +AH   +++  + + 
Sbjct: 146 RNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSIL 205

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
           A+ R + T+ +++  M +  L  T +TF I  + + +A +  +AV IF  M ++  +  +
Sbjct: 206 AKTRQFETMVSVLEEMGTKGL-LTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGV 264

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
            + N +LD L + K  ++A  LF   + +F  ++++Y V+ NGWC V+   +A  +  +M
Sbjct: 265 ETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDM 324

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           +D+GL P++  +N++L+G  R+ +  +A + F  MK +    +V +YT ++  F     +
Sbjct: 325 IDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSM 384

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           + A   FD MV+ G+ P  A Y  +I     +  ++    + +EM  KG+ P+  TYN +
Sbjct: 385 ETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNAL 444

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGV 412
           I+ + +    E A     +M  +E EP++ T+N++++ +  A   E G  ++E+M   G+
Sbjct: 445 IKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGI 504

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
           C P+ ++Y +LI  +    KS +   A + L EM+D+G       +N+
Sbjct: 505 C-PDDNSYTVLIRGLIGEGKSRE---ACRYLEEMLDKGMKTPLIDYNK 548



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 110/261 (42%), Gaps = 1/261 (0%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           R+R+      + + M    L P      ++ E  + + K   A+K+F  M   G   ++ 
Sbjct: 310 RVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVR 369

Query: 175 SFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           S+  ++   CK+  +E A   F  +     + D   Y  +  G+   K+ +   E+LKEM
Sbjct: 370 SYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEM 429

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
            ++G  P+  TYN ++K        E A R + +M + + E  + T+  I+  + +    
Sbjct: 430 QEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNY 489

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           +  R V++ M+  G+ P   +Y  +I+ L  +     A    EEM+ KG       YN  
Sbjct: 490 EMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPLIDYNKF 549

Query: 354 IRGLCHTGEMERALEFVGRMK 374
                  G+ E   E   R K
Sbjct: 550 AADFHRGGQPEIFEELAQRAK 570



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 5/175 (2%)

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           TYN+M+ +L K    E  + V EEM  KG +    T+ + ++      E ++A+     M
Sbjct: 197 TYNSMMSILAKTRQFETMVSVLEEMGTKGLL-TMETFTIAMKAFAAAKERKKAVGIFELM 255

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
           K  + +  V+T N L+     A   +    LF+K+      PN+ TY +L++  + R + 
Sbjct: 256 KKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFT-PNMMTYTVLLNG-WCRVR- 312

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            +L+ A ++  +M+D+G  P     N +L GLL    +  A ++  +    G  P
Sbjct: 313 -NLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCP 366


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 105/372 (28%), Positives = 179/372 (48%), Gaps = 4/372 (1%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           R    RT   ++  M S  + P + TF  + + ++  G  + A+++   M E GC  +  
Sbjct: 209 RAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGV 268

Query: 175 SFNTILDLLCKEKKVEKAYNLFKV-FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           + N +++  CK  +VE A    +      F+ D ++YN   +G C     + AL+V+  M
Sbjct: 269 TVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLM 328

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           +  G +P++ TYN V+    + G+++EA     +M  R C  D  T+ T++        +
Sbjct: 329 LQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRL 388

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           + A ++   +   G+ P V T+N +I  LCK       I +FEEM   G  P+  TYN++
Sbjct: 389 EEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNIL 448

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           I  LC  G++  AL+ +  M+ + C  +  TYN +I   C    IE   E+F++M +   
Sbjct: 449 IDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGI 508

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGL 473
             +  T+N LI  +   K+ DD   A +L+ +MV  G  P   T+N +L      GN   
Sbjct: 509 SRSAVTFNTLIDGLCKAKRIDD---ATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKK 565

Query: 474 AKEILRLQSRCG 485
           A +IL   +  G
Sbjct: 566 AADILETMTANG 577



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 172/361 (47%), Gaps = 4/361 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           F+H +++       + + ++ + M    + P   T   + +    A +   AV +   M 
Sbjct: 165 FNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMS 224

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNL-FKVFRGKFKADVISYNVIANGWCLVKRTN 224
            HG      +F T++    +E  +E A  +  K+         ++ NV+ NG+C + R  
Sbjct: 225 SHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVE 284

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
            AL  +++ +  G  P+  TYN  + G  + G +  A +    M +   + DV TY T++
Sbjct: 285 DALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVI 344

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
           +     GE+  A+ + + MV+ G LP   T+N +I  L  ++ +E A+ +  E+  KG  
Sbjct: 345 NCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLS 404

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           P+  T+N++I  LC  G+    +     MK   C P+  TYNILI + C  G++   L+L
Sbjct: 405 PDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDL 464

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
             +M S  C  +  TYN +I ++  + + ++   A ++  +M  +G      TFN +++G
Sbjct: 465 LNEMESNGCPRSTVTYNTIIDALCKKMRIEE---AEEVFDQMDAQGISRSAVTFNTLIDG 521

Query: 465 L 465
           L
Sbjct: 522 L 522



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 153/294 (52%), Gaps = 2/294 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  I+   ++ D      L   MKS    P + T+ I+ +   S GK   A+ +   M
Sbjct: 409 TFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEM 468

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
             +GC +S  ++NTI+D LCK+ ++E+A  +F     +      +++N + +G C  KR 
Sbjct: 469 ESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRI 528

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A E++++MV  GL PN  TYN +L  Y + G I++A      M     EIDVVTY T+
Sbjct: 529 DDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTL 588

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++G    G  + A  +  GM   G+ P+   YN +IQ L +++++ +A+ +F EM   G 
Sbjct: 589 INGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGE 648

Query: 344 MPNSTTYNVVIRGLCH-TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
            P++ TY +V R LC   G ++ A +F+  M +    P   ++ +L     + G
Sbjct: 649 PPDALTYKIVFRSLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNLG 702



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 102/352 (28%), Positives = 158/352 (44%), Gaps = 34/352 (9%)

Query: 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISY 210
           G+ D A  I   M + GC     +FNT++  L  + ++E+A +L +    K    DV ++
Sbjct: 351 GELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTF 410

Query: 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
           N++ N  C V   +  + + +EM   G  P+  TYNI++      G++  A     EM+ 
Sbjct: 411 NILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMES 470

Query: 271 RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
             C    VTY TI+        I+ A  VFD M   G+  S  T+N +I  LCK   +++
Sbjct: 471 NGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDD 530

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           A  + E+MV +G  PN+ TYN ++   C  G +++A + +  M  +  E +V TY  LI 
Sbjct: 531 ATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLIN 590

Query: 391 YFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL------------- 437
             C AG  +  L+L   M      P    YN +I S+F R    D L             
Sbjct: 591 GLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPP 650

Query: 438 --------------------VAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
                                A   L+EMV++GFMP   +F  +  GLL +G
Sbjct: 651 DALTYKIVFRSLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNLG 702



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 118/263 (44%), Gaps = 6/263 (2%)

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK---CEIDVVTYTTIVH 285
           +++EM   G           ++ Y R  + ++A    L          + D V +  +++
Sbjct: 111 LVREMRREGHQVRAVVVRSFVESYARLRRFDDAVDLVLNQLDNDTFGVQADTVVFNHLLN 170

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
                 ++K   +V++ M   G+ P V T N +I+ LC+   V  A+L+ EEM   G  P
Sbjct: 171 VLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAP 230

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           + TT+  +++G    G +E AL    +M +  C P   T N+LI  +C  G +E  L   
Sbjct: 231 DETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYI 290

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           ++  +    P+  TYN  +  +    ++  +  A K++  M+  G  P  FT+N V+N L
Sbjct: 291 QQEIADGFEPDQVTYNTFVHGLC---QNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCL 347

Query: 466 LLIGNQGLAKEILRLQSRCGRLP 488
              G    AK I+      G LP
Sbjct: 348 SKNGELDEAKGIVNQMVDRGCLP 370



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 121/273 (44%), Gaps = 13/273 (4%)

Query: 226 ALEVLKEMVDR-GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           AL +L   + R    P+   Y  +++    AG  +       EM++   ++  V   + V
Sbjct: 72  ALRMLNSALAREDFAPSSAVYEEIVQKLGTAGAFDLMEGLVREMRREGHQVRAVVVRSFV 131

Query: 285 HGFGVVGEIKRARNVFDGMVNG------GVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
             +     ++R  +  D ++N       GV      +N ++ VL +   ++    V+ EM
Sbjct: 132 ESYA---RLRRFDDAVDLVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEM 188

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
            G+G  P+  T N +I+ LC   ++  A+  +  M      P+  T+  L++ F + G I
Sbjct: 189 TGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSI 248

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           E  L +  KM    C P   T N+LI+      + +D L  G +  E+ D GF P + T+
Sbjct: 249 EAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDAL--GYIQQEIAD-GFEPDQVTY 305

Query: 459 NRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           N  ++GL   G+   A +++ L  + G  P  F
Sbjct: 306 NTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVF 338


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 103/346 (29%), Positives = 182/346 (52%), Gaps = 10/346 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+ ++   Y  +G+ D+A+++   M        + ++NTIL  LC   K+++A  +
Sbjct: 175 PDVITYNVLIGGYCKSGEIDKALQVLERMS---VAPDVVTYNTILRSLCDSGKLKEAMEV 231

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             +  + +   DVI+Y ++    C      +A+++L EM  +G  P++ TYN+++ G  +
Sbjct: 232 LDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICK 291

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G+++EA +F   M    C+ +V+T+  I+      G    A  +   M+  G  PSV T
Sbjct: 292 EGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVT 351

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           +N +I  LC+K  +  AI V E+M   G MPNS +YN ++ G C   +M+RA+E++  M 
Sbjct: 352 FNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMV 411

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
              C P++ TYN L+   C  G+ +  +E+  ++ S  C P L TYN +I  +    K++
Sbjct: 412 SRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTE 471

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
               A +LL EM  +G  P   T++ +L GL   G +G   E +++
Sbjct: 472 ---YAAELLEEMRRKGLKPDIITYSTLLRGL---GCEGKVDEAIKI 511



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 175/341 (51%), Gaps = 5/341 (1%)

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADV 207
           +  +GK  +A +I   +   G    + ++N ++   CK  +++KA  + +  R     DV
Sbjct: 152 FCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALQVLE--RMSVAPDV 209

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           ++YN I    C   +  +A+EVL   + R   P++ TY I+++       + +A +   E
Sbjct: 210 VTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDE 269

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M+K+ C+ DVVTY  +++G    G +  A    + M   G  P+V T+N +++ +C    
Sbjct: 270 MRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGR 329

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
             +A  +  +M+ KG  P+  T+N++I  LC    + RA++ + +M    C PN  +YN 
Sbjct: 330 WMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNP 389

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           L+  FC   +++R +E  E M S  C P++ TYN L++++    K+D    A ++L ++ 
Sbjct: 390 LLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKAD---AAVEILNQLS 446

Query: 448 DRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            +G  P   T+N V++GL  +G    A E+L    R G  P
Sbjct: 447 SKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKP 487



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 167/338 (49%), Gaps = 4/338 (1%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           ++ +S+ P   T+  I      +GK   A+++     +  C   + ++  +++  C +  
Sbjct: 200 LERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSG 259

Query: 189 VEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           V +A  L    R K  K DV++YNV+ NG C   R ++A++ L  M   G  PN+ T+NI
Sbjct: 260 VGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNI 319

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           +L+     G+  +A R   +M ++ C   VVT+  +++       + RA +V + M   G
Sbjct: 320 ILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHG 379

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
            +P+  +YN ++   C++  ++ AI   E MV +G  P+  TYN ++  LC  G+ + A+
Sbjct: 380 CMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAV 439

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           E + ++    C P + TYN +I      G+ E   EL E+M      P++ TY+ L+  +
Sbjct: 440 EILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGL 499

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
               K D+ +   K+  +M      P   T+N ++ GL
Sbjct: 500 GCEGKVDEAI---KIFHDMEGLSIKPSAVTYNAIMLGL 534



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/326 (29%), Positives = 152/326 (46%), Gaps = 42/326 (12%)

Query: 198 VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
           +++G    DVI+   +  G+C   +T KA  +++ + + G  P++ TYN+++ GY ++G+
Sbjct: 134 IYQGDI-PDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGYCKSGE 192

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           I++A +    M       DVVTY TI+      G++K A  V D  +     P V TY  
Sbjct: 193 IDKALQVLERMSVAP---DVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTI 249

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           +I+  C    V  A+ + +EM  KG  P+  TYNV+I G+C  G ++ A++F+  M    
Sbjct: 250 LIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYG 309

Query: 378 CEPNVQTYNILIRYFCDAGE-----------------------------------IERGL 402
           C+PNV T+NI++R  C  G                                    + R +
Sbjct: 310 CQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAI 369

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           ++ EKM    C+PN  +YN L+      KK D  +   + L  MV RG  P   T+N +L
Sbjct: 370 DVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAI---EYLEIMVSRGCYPDIVTYNTLL 426

Query: 463 NGLLLIGNQGLAKEILRLQSRCGRLP 488
             L   G    A EIL   S  G  P
Sbjct: 427 TALCKDGKADAAVEILNQLSSKGCSP 452



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 140/260 (53%), Gaps = 1/260 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T  II     S G+   A ++   M   GC  S+ +FN +++ LC+++ + +A ++
Sbjct: 312 PNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDV 371

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             K+ +     + +SYN + +G+C  K+ ++A+E L+ MV RG  P++ TYN +L    +
Sbjct: 372 LEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCK 431

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G+ + A     ++  + C   ++TY T++ G   VG+ + A  + + M   G+ P + T
Sbjct: 432 DGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIIT 491

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y+ +++ L  +  V+ AI +F +M G    P++ TYN ++ GLC   +  RA++F+  M 
Sbjct: 492 YSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMV 551

Query: 375 DDECEPNVQTYNILIRYFCD 394
           +  C+P   TY ILI    D
Sbjct: 552 EKGCKPTKATYTILIEGIAD 571



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 147/304 (48%), Gaps = 1/304 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M+     P   T+ ++       G+ D A+K   +M  +GC+ ++ + N IL  +C
Sbjct: 266 LLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMC 325

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
              +   A  L   + R      V+++N++ N  C  +   +A++VL++M   G  PN  
Sbjct: 326 STGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSL 385

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           +YN +L G+ +  +++ A  +   M  R C  D+VTY T++      G+   A  + + +
Sbjct: 386 SYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQL 445

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            + G  P + TYN +I  L K    E A  + EEM  KG  P+  TY+ ++RGL   G++
Sbjct: 446 SSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKV 505

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A++    M+    +P+  TYN ++   C A +  R ++    M    C P   TY IL
Sbjct: 506 DEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTIL 565

Query: 424 ISSM 427
           I  +
Sbjct: 566 IEGI 569



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 124/243 (51%), Gaps = 6/243 (2%)

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           NI L+   R G++EE  +F   M  +    DV+  T+++ GF   G+ ++A  + + + N
Sbjct: 111 NIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILEN 170

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G +P V TYN +I   CK   ++ A+ V E M      P+  TYN ++R LC +G+++ 
Sbjct: 171 SGAVPDVITYNVLIGGYCKSGEIDKALQVLERM---SVAPDVVTYNTILRSLCDSGKLKE 227

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           A+E + R    EC P+V TY ILI   C+   + + ++L ++M    C P++ TYN+LI+
Sbjct: 228 AMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLIN 287

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
            +    + D+ +   K L  M   G  P   T N +L  +   G    A+ +L    R G
Sbjct: 288 GICKEGRLDEAI---KFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKG 344

Query: 486 RLP 488
             P
Sbjct: 345 CSP 347



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 159/322 (49%), Gaps = 12/322 (3%)

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEV 229
           +Q +++ N  L+ +  E       N  + F  +F +++    ++ NG        + L+ 
Sbjct: 76  QQIVSTPNGDLNGIGMESSSPNGVNGSRSFE-EFASNIHLRKLVRNG-----ELEEGLKF 129

Query: 230 LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289
           L+ M+ +G  P++     +++G+ R+G+  +A R    ++      DV+TY  ++ G+  
Sbjct: 130 LERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGYCK 189

Query: 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
            GEI +A  V + M    V P V TYN +++ LC    ++ A+ V +  + +   P+  T
Sbjct: 190 SGEIDKALQVLERM---SVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVIT 246

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
           Y ++I   C+   + +A++ +  M+   C+P+V TYN+LI   C  G ++  ++    M 
Sbjct: 247 YTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMP 306

Query: 410 SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
              C PN+ T+NI++ SM    +  D   A +LL +M+ +G  P   TFN ++N L    
Sbjct: 307 LYGCQPNVITHNIILRSMCSTGRWMD---AERLLADMLRKGCSPSVVTFNILINFLCRKR 363

Query: 470 NQGLAKEILRLQSRCGRLPRQF 491
             G A ++L    + G +P   
Sbjct: 364 LLGRAIDVLEKMPKHGCMPNSL 385



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 126/257 (49%), Gaps = 3/257 (1%)

Query: 102 SPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           SPS  +F+  I+   R R       ++ +M      P   ++  +   +    K DRA++
Sbjct: 346 SPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIE 405

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADV-ISYNVIANGWC 218
               M   GC   + ++NT+L  LCK+ K + A  +      K  + V I+YN + +G  
Sbjct: 406 YLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLT 465

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
            V +T  A E+L+EM  +GL P++ TY+ +L+G    G+++EA + F +M+    +   V
Sbjct: 466 KVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAV 525

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TY  I+ G     +  RA +    MV  G  P+ ATY  +I+ +  +   E A+ +  E+
Sbjct: 526 TYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTILIEGIADEGLAEEALELLNEL 585

Query: 339 VGKGYMPNSTTYNVVIR 355
             +G++  S+   V ++
Sbjct: 586 CSRGFVKKSSAEQVAVK 602


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/390 (27%), Positives = 182/390 (46%), Gaps = 41/390 (10%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M      P   T+  + +  V +GK   A  +   M    C+ S  +FN ++D+ C
Sbjct: 328 LLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFC 387

Query: 185 KEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           K  +++ AY LF++   RG    D+ +YN++ +G C   R + A ++L+ M + G  P++
Sbjct: 388 KVGQLDLAYELFQLMTDRGCL-PDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDV 446

Query: 243 TTYNIVLKGYFRAGQIEEAWR---------FFL--------------------------E 267
            TYN ++ G  +A Q++EA+          +FL                          E
Sbjct: 447 VTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLRE 506

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M++     DVV YT ++HGF    ++ ++   F  M++ G +P+V TY+ +I  LCK   
Sbjct: 507 MERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSAR 566

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
           V +  ++ + M+ +G  P++  Y  VI GLC +   + A E    MK   C P V TYN+
Sbjct: 567 VRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNV 626

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           L+   C    ++  + L E M S  CLP+  TYN +    +   + D    A +L   M 
Sbjct: 627 LVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDK---AFRLFQAMK 683

Query: 448 DRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
            RG  P  F ++ +L  L+       A EI
Sbjct: 684 SRGCSPTPFMYSLLLTKLVAEEKMDQAMEI 713



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 108/406 (26%), Positives = 185/406 (45%), Gaps = 40/406 (9%)

Query: 120 RTVWTLVH-RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           R    LVH R    +  P+  T+ I+ +    + +   A  I   M E GC  ++ ++NT
Sbjct: 217 RVDSALVHYRDMQRNCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNT 276

Query: 179 ILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           +++  CK   +++A  LF ++       DV +YN++ +G+C  +R     ++L+EMV  G
Sbjct: 277 LINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYG 336

Query: 238 LNPNLTTYNIVLKG-----------------------------------YFRAGQIEEAW 262
             PN  TYN ++                                     + + GQ++ A+
Sbjct: 337 CEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAY 396

Query: 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322
             F  M  R C  D+ TY  ++ G      I  AR + + M   G  P V TYN+++  L
Sbjct: 397 ELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGL 456

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
           CK   V+ A  V+E +   GY  +  T + +I GLC +  ++ A + +  M+ +   P+V
Sbjct: 457 CKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDV 516

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
             Y ILI  FC A ++++ L  F +M    C+P + TY+I+I  +    +  D      L
Sbjct: 517 VAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRD---GCML 573

Query: 443 LIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           L  M++RG  P    +  V++GL    +   A E+ +L  + G  P
Sbjct: 574 LKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAP 619



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 185/385 (48%), Gaps = 4/385 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  I+   +L +      L ++M   S  P   T+ I+ + Y    +     K+   M
Sbjct: 273 TYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEM 332

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV-FRGKFKADVISYNVIANGWCLVKRT 223
            ++GC  +  ++NT++D L K  K   A+NL ++  R   K    ++N++ + +C V + 
Sbjct: 333 VKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQL 392

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A E+ + M DRG  P++ TYNI++ G  RA +I++A +    M +  C  DVVTY +I
Sbjct: 393 DLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSI 452

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           V G     ++  A  V++ + NGG    V T + +I  LCK   +++A  +  EM   G 
Sbjct: 453 VSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGS 512

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+   Y ++I G C   +++++L F   M D  C P V TY+I+I   C +  +  G  
Sbjct: 513 APDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCM 572

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           L + M      P+   Y  +I  +    KSD    A +L   M   G  P   T+N +++
Sbjct: 573 LLKTMLERGVTPDAIVYTSVIDGLC---KSDSYDEAYELYKLMKQTGCAPTVVTYNVLVD 629

Query: 464 GLLLIGNQGLAKEILRLQSRCGRLP 488
            L  +     A  +L +    G LP
Sbjct: 630 KLCKVSRLDEAIHLLEVMESDGCLP 654



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 104/423 (24%), Positives = 201/423 (47%), Gaps = 4/423 (0%)

Query: 66  HWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTL 125
           +  P +V +++++L +   KA+ FF+  +  P Y HS  + +  +    R +  +  + L
Sbjct: 96  YLVPSVVGRVLQQL-DDLDKAVKFFDWCTGQPGYKHSKFTCNCLLSAFVRKKKAQEAYDL 154

Query: 126 VHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185
               +     P   T++ +   +  A    +A ++   M + G       +NTI+  LC 
Sbjct: 155 FKNHRCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCD 214

Query: 186 EKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
             +V+ A   ++  +      VI+Y ++ +  C   R + A  +L++M++ G  PN+ TY
Sbjct: 215 NGRVDSALVHYRDMQRNCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTY 274

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           N ++ G+ + G ++EA   F +M +  C  DV TY  ++ G+      +    +   MV 
Sbjct: 275 NTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVK 334

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G  P+  TYN ++  L K     +A  + + M+ +   P+  T+N++I   C  G+++ 
Sbjct: 335 YGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDL 394

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           A E    M D  C P++ TYNI+I   C A  I+   +L E+M    C P++ TYN ++S
Sbjct: 395 AYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVS 454

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
            +    + D+   A ++   + + G+     T + +++GL        A+++LR   R G
Sbjct: 455 GLCKASQVDE---AYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNG 511

Query: 486 RLP 488
             P
Sbjct: 512 SAP 514



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 98/384 (25%), Positives = 193/384 (50%), Gaps = 7/384 (1%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           KA   +++   H     SP S  ++  I+   + RD++  + L+  M+   + P    + 
Sbjct: 147 KAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYN 206

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRG 201
            I +     G+ D A+  +  M  + C  S+ ++  ++D LCK  ++  A  + + +   
Sbjct: 207 TIIKGLCDNGRVDSALVHYRDMQRN-CAPSVITYTILVDALCKSARISDASLILEDMIEA 265

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
               +V++YN + NG+C +   ++A+ +  +M++   +P++ TYNI++ GY +  + ++ 
Sbjct: 266 GCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDG 325

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
            +   EM K  CE + +TY T++      G+   A N+   M+     PS  T+N MI +
Sbjct: 326 AKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDM 385

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
            CK   ++ A  +F+ M  +G +P+  TYN++I G C    ++ A + + RM +  C P+
Sbjct: 386 FCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPD 445

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
           V TYN ++   C A +++   E++E + +G    ++ T + LI  +   ++ DD   A K
Sbjct: 446 VVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDD---AEK 502

Query: 442 LLIEMVDRGFMPRKFTFNRVLNGL 465
           LL EM   G  P    +  +++G 
Sbjct: 503 LLREMERNGSAPDVVAYTILIHGF 526



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 170/375 (45%), Gaps = 43/375 (11%)

Query: 71  LVDQIIKRLWNHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHR 128
           L+D ++K     + K +  FN+          PS  +F+  ID+  ++      + L   
Sbjct: 347 LMDSLVK-----SGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQL 401

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M      P   T+ I+      A + D A ++   M E GC   + ++N+I+  LCK  +
Sbjct: 402 MTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQ 461

Query: 189 VEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           V++AY +++V R G +  DV++ + + +G C  +R + A ++L+EM   G  P++  Y I
Sbjct: 462 VDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTI 521

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKC---------------------------------- 273
           ++ G+ +A Q++++  FF EM  + C                                  
Sbjct: 522 LIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERG 581

Query: 274 -EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
              D + YT+++ G         A  ++  M   G  P+V TYN ++  LCK   ++ AI
Sbjct: 582 VTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAI 641

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
            + E M   G +P++ TYN V  G   + E ++A      MK   C P    Y++L+   
Sbjct: 642 HLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKL 701

Query: 393 CDAGEIERGLELFEK 407
               ++++ +E++E+
Sbjct: 702 VAEEKMDQAMEIWEE 716



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 108/235 (45%), Gaps = 3/235 (1%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID   + R       L+  M+     P    + I+   +  A + D+++  F  M + GC
Sbjct: 488 IDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGC 547

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKRTNKAL 227
             ++ +++ ++D LCK  +V     L K    RG    D I Y  + +G C     ++A 
Sbjct: 548 VPTVITYSIVIDKLCKSARVRDGCMLLKTMLERG-VTPDAIVYTSVIDGLCKSDSYDEAY 606

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
           E+ K M   G  P + TYN+++    +  +++EA      M+   C  D VTY ++  GF
Sbjct: 607 ELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGF 666

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
               E  +A  +F  M + G  P+   Y+ ++  L  ++ ++ A+ ++EE +  G
Sbjct: 667 WKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKLVAEEKMDQAMEIWEEALEAG 721



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 79/165 (47%), Gaps = 4/165 (2%)

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
           +AR+RD      L+  M    + P    +  + +    +   D A +++  M + GC  +
Sbjct: 564 SARVRD---GCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPT 620

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLK 231
           + ++N ++D LCK  ++++A +L +V        D ++YN + +G+      +KA  + +
Sbjct: 621 VVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQ 680

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID 276
            M  RG +P    Y+++L       ++++A   + E  +   ++D
Sbjct: 681 AMKSRGCSPTPFMYSLLLTKLVAEEKMDQAMEIWEEALEAGADVD 725


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 99/378 (26%), Positives = 182/378 (48%), Gaps = 39/378 (10%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L  +M      P   T+  +       G    A+++  SM +  C+  +  + +I+D LC
Sbjct: 148 LFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLC 207

Query: 185 KEKKVEKAYNLFKVFRG------------------------------------KFKADVI 208
           K+++V +A+NLF    G                                    K   DV+
Sbjct: 208 KDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVV 267

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
            ++ + +  C   +  +A E++  M+ RG+ P++ TY  ++ G+    +++EA + F  M
Sbjct: 268 IFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMM 327

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
            ++    DV++YTT+++G+  + +I +A  +F+ M     +P   TYN ++  LC    +
Sbjct: 328 VRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRL 387

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           ++AI +F EMV +G MP+  TY++++  LC    +E A+  +  ++     P++Q YNI+
Sbjct: 388 QDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNII 447

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           I   C AGE+E   +LF  + S    P++ TYNI+I  +  R   ++   A KL +EM  
Sbjct: 448 IDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNE---ANKLFMEMDG 504

Query: 449 RGFMPRKFTFNRVLNGLL 466
               P   T+N +  G L
Sbjct: 505 NDCSPDGCTYNTIARGFL 522



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/384 (28%), Positives = 189/384 (49%), Gaps = 11/384 (2%)

Query: 86  ALHFFN-ILSYHPTYAHSPSSFDHAIDLA--ARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           AL  FN +L  HP     PS  D A  L   A+++ Y TV +L  +M S  + P   T  
Sbjct: 40  ALSSFNRLLHMHP----PPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLN 95

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRG 201
           I+   +    +   A  +   + + G +    +F T++  LC E K+ +A +LF K+   
Sbjct: 96  ILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDE 155

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
            F+ +V++Y  + NG C V  T+ A+ +L+ M      P++  Y  ++    +  Q+ EA
Sbjct: 156 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEA 215

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
           +  F +M  +    D+ TYT++VH    + E K    + + MVN  +LP V  ++ ++  
Sbjct: 216 FNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDA 275

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           LCK+  V  A  + + M+ +G  P+  TY  ++ G C   EM+ A++    M      P+
Sbjct: 276 LCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPD 335

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
           V +Y  LI  +C   +I++ + LFE+M     +P+  TYN L+  +    +  D   A  
Sbjct: 336 VISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQD---AIA 392

Query: 442 LLIEMVDRGFMPRKFTFNRVLNGL 465
           L  EMV RG MP   T++ +L+ L
Sbjct: 393 LFHEMVARGQMPDLVTYSILLDSL 416



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 171/351 (48%), Gaps = 8/351 (2%)

Query: 90  FNILSYHPTYAHSPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
           FN+ S       SP  F +   +     L +++ V TL+++M +  + P    F+ + + 
Sbjct: 216 FNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDA 275

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKAD 206
               GK   A +I   M + G    + ++ T++D  C + ++++A  +F +  R  F  D
Sbjct: 276 LCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPD 335

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           VISY  + NG+C + + +KA+ + +EM  +   P+  TYN ++ G    G++++A   F 
Sbjct: 336 VISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFH 395

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           EM  R    D+VTY+ ++        ++ A  +   +    + P +  YN +I  +C+  
Sbjct: 396 EMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAG 455

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            +E A  +F  +  KG  P+  TYN++I GLC  G +  A +    M  ++C P+  TYN
Sbjct: 456 ELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYN 515

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
            + R F    E  R ++L E+M     L    + ++  +++ V   SDD L
Sbjct: 516 TIARGFLQNNETLRAIQLLEEM-----LARGFSADVSTTTLLVEMLSDDGL 561



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 150/318 (47%), Gaps = 19/318 (5%)

Query: 163 SMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVIS------------- 209
           S+H +    +L+SFN +L +      V+ A  L  + + K  + V+S             
Sbjct: 31  SLHFNTLDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPN 90

Query: 210 ---YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
               N++ N +C + R   A  VL +++  G  P+ TT+  +++G    G+I EA   F 
Sbjct: 91  VYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFD 150

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           +M     + +VVTY T+++G   VG    A  +   M  G   P V  Y ++I  LCK  
Sbjct: 151 KMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDR 210

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            V  A  +F +MVG+G  P+  TY  ++  LC+  E +     + +M + +  P+V  ++
Sbjct: 211 QVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFS 270

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            ++   C  G++    E+ + M      P++ TY  L+    ++ + D+   A K+   M
Sbjct: 271 TVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDE---AVKVFDMM 327

Query: 447 VDRGFMPRKFTFNRVLNG 464
           V +GF P   ++  ++NG
Sbjct: 328 VRKGFAPDVISYTTLING 345



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 64/170 (37%), Gaps = 38/170 (22%)

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           PS+  +  ++  + K       + +  +M   G  PN  T N++I   CH   +  A   
Sbjct: 54  PSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSV 113

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
           + ++     +P+  T+  LIR  C  G+I   L LF+K                      
Sbjct: 114 LAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDK---------------------- 151

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
                           M+D GF P   T+  ++NGL  +GN   A  +LR
Sbjct: 152 ----------------MIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLR 185


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 182/366 (49%), Gaps = 4/366 (1%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            LV RM      P   T+ ++       G  D A  +   M       ++  ++T++D L
Sbjct: 211 ALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSL 270

Query: 184 CKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CK +  + A NLF     K  + +VI+Y+ + +  C  +R + A  +L +M++R +NPN+
Sbjct: 271 CKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNV 330

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            T+N ++  + + G++ EA + + EM KR  + D+ TY+++++GF +   +  A+++F+ 
Sbjct: 331 VTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFEL 390

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M++    P+V TYN +I   CK   ++  + +F EM  +G + N+ TY  +I G     +
Sbjct: 391 MISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARD 450

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
            + A     +M  D   PN+ TYN L+   C  G++E+ + +FE +      P + TYNI
Sbjct: 451 CDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNI 510

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           +I  M    K +D      L   +  +G  P    +N +++G    G +  A  + R   
Sbjct: 511 MIEGMCKAGKVED---GWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMR 567

Query: 483 RCGRLP 488
             G LP
Sbjct: 568 EDGPLP 573



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 159/315 (50%), Gaps = 1/315 (0%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           +   ID   + R       L   M++  + P   T++ +     +  +   A ++   M 
Sbjct: 263 YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMI 322

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTN 224
           E     ++ +FN ++D   KE K+ +A  L+ ++ +     D+ +Y+ + NG+C+  R +
Sbjct: 323 ERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 382

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           +A  + + M+ +   PN+ TYN ++ G+ +A +I+E    F EM +R    + VTYTT++
Sbjct: 383 EAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLI 442

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
           HGF    +   A+ VF  MV+ GV P++ TYN ++  LCK   +E A++VFE +      
Sbjct: 443 HGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKME 502

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           P   TYN++I G+C  G++E   +    +     +P+V  YN +I  FC  G  E    L
Sbjct: 503 PTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADAL 562

Query: 405 FEKMGSGVCLPNLDT 419
           F KM     LP+  T
Sbjct: 563 FRKMREDGPLPDSGT 577



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 164/334 (49%), Gaps = 4/334 (1%)

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYN 211
           K D  + +   M   G   +L ++N +++  C+  ++  A  L  K+ +  ++  +++ +
Sbjct: 100 KFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLS 159

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
            + NG+C  KR + A+ ++ +MV+ G  P+  T+  ++ G F   +  EA      M +R
Sbjct: 160 SLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQR 219

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
            C+ ++VTY  +V+G    G+I  A N+ + M    +  +V  Y+ +I  LCK    ++A
Sbjct: 220 GCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDA 279

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
           + +F EM  KG  PN  TY+ +I  LC+      A   +  M + +  PNV T+N LI  
Sbjct: 280 LNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDA 339

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
           F   G++    +L+++M      P++ TY+ LI+   +  + D+   A  +   M+ +  
Sbjct: 340 FVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE---AKHMFELMISKDC 396

Query: 452 MPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
            P   T+N ++NG           E+ R  S+ G
Sbjct: 397 FPNVVTYNTLINGFCKAKRIDEGVELFREMSQRG 430



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 141/283 (49%), Gaps = 4/283 (1%)

Query: 188 KVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
           K++ A  LF  + + +    +  +N + +    +K+ +  + + ++M   G++ NL TYN
Sbjct: 65  KLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYN 124

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
           I++  + R  QI  A     +M K   E  +VT +++++G+     I  A  + D MV  
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G  P   T+  +I  L   +    A+ + + MV +G  PN  TY VV+ GLC  G+++ A
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLA 244

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
              + +M+  + E NV  Y+ +I   C     +  L LF +M +    PN+ TY+ LIS 
Sbjct: 245 FNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISC 304

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
           +   ++  D   A +LL +M++R   P   TFN +++  +  G
Sbjct: 305 LCNYERWSD---ASRLLSDMIERKINPNVVTFNALIDAFVKEG 344



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/199 (20%), Positives = 88/199 (44%)

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
           R  +     Y  +L+    + ++++A   F  M K +    +  +  ++     + +   
Sbjct: 44  RAFSSGSGDYREILRNGLHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDL 103

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
             ++ + M   G+  ++ TYN +I   C++  +  A+ +  +M+  GY P+  T + ++ 
Sbjct: 104 VISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLN 163

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
           G CH   +  A+  V +M +    P+  T+  LI       +    + L ++M    C P
Sbjct: 164 GYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQP 223

Query: 416 NLDTYNILISSMFVRKKSD 434
           NL TY ++++ +  R   D
Sbjct: 224 NLVTYGVVVNGLCKRGDID 242



 Score = 46.2 bits (108), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 3/125 (2%)

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
           G+ +   S  Y  ++R   H+ +++ A+   G M      P++  +N L+       + +
Sbjct: 43  GRAFSSGSGDYREILRNGLHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFD 102

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
             + L EKM       NL TYNILI+  F R+    L +A  LL +M+  G+ P   T +
Sbjct: 103 LVISLGEKMQRLGISHNLYTYNILINC-FCRRSQISLALA--LLGKMMKLGYEPSIVTLS 159

Query: 460 RVLNG 464
            +LNG
Sbjct: 160 SLLNG 164


>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 770

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 121/439 (27%), Positives = 208/439 (47%), Gaps = 41/439 (9%)

Query: 88  HFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
           HF + L  +P    S SS +  ID   + + Y  V ++  +M S+S+ P   + + + E 
Sbjct: 44  HFHHTLQDYPNSIPSYSSCNTLIDNLRKAKHYDHVISVHSKMASVSVFPCFTSLSALIES 103

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKAD 206
           +V+  K   A  +   + + G   ++ +FN +L   C+     KA +LF +  R     D
Sbjct: 104 FVNTQKPSFAFGVLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPD 163

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
            +SYN + NG C  KR  +A E+ KEM      PN  T++ ++ G+ + G +EE +    
Sbjct: 164 CVSYNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLE 223

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           EM+K   E DV  Y+ ++ GF   G+I+R + +F+ M+   V P+V TY+ ++  LCKK 
Sbjct: 224 EMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQ 283

Query: 327 S-----------------------------------VENAILVFEEMVGKGYMPNSTTYN 351
                                                 +AI V + MV +G  PN+ TYN
Sbjct: 284 KWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYN 343

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
            +I GLC  G ++ AL  +  M     +P+V TY+ L++  C  G+I+  ++L   + S 
Sbjct: 344 AIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSK 403

Query: 412 V--CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
                P++  +N++I  +  +++   L  A ++   MV+RGF     T+N +++G L  G
Sbjct: 404 EFHIKPDVFAFNLVIQELCKQRR---LRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAG 460

Query: 470 NQGLAKEILRLQSRCGRLP 488
               A E+ +     G  P
Sbjct: 461 KLTKALELWKDAVDSGISP 479



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 109/419 (26%), Positives = 195/419 (46%), Gaps = 35/419 (8%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F   ID   +  D    + L+  M+ + L      ++ +   + S G  +R  ++F  M
Sbjct: 201 TFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEM 260

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRT 223
                  ++ +++ +++ LCK++K ++A  +     G K + DV++Y V+A+G     R 
Sbjct: 261 LRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRA 320

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A++VL  MV RG  PN  TYN ++ G  + G++++A      M K+  + DVVTY+T+
Sbjct: 321 SDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTL 380

Query: 284 VHGFGVVGEIKRARNVFDGMVNGG--VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
           V G   VG+I  A ++ + +++    + P V  +N +IQ LCK+  + +A  V+  MV +
Sbjct: 381 VKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVER 440

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
           G+  N  TYN++I G    G++ +ALE      D    PN  TY +LI   C    +   
Sbjct: 441 GFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIA 500

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMF--------------VRKKSDD-------LLVAG 440
             LF K  +    P +  YN L++S+               +R  + D       +++ G
Sbjct: 501 KGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIIDG 560

Query: 441 KLLIEMVDRG-----------FMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            L    V+              +P   TF+ ++N  L +G    A  +      CG +P
Sbjct: 561 TLKAGDVESAKELLLEMLNMNLVPDNITFSILINRFLKLGQLDEAASLYERMVSCGHVP 619



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 164/317 (51%), Gaps = 6/317 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+  I       G+ D A+ I  +M + G +  + +++T++  LC   K+++A +L
Sbjct: 337 PNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDL 396

Query: 196 FKVFRGK---FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
             +   K    K DV ++N++    C  +R   A  V   MV+RG   N+ TYNI++ GY
Sbjct: 397 LNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGY 456

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
             AG++ +A   + +        +  TYT +++G   +  +  A+ +F+     G  P+V
Sbjct: 457 LSAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTV 516

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
           + YN ++  LC++ SVE A  +F+EM    + P+  ++N++I G    G++E A E +  
Sbjct: 517 SEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLE 576

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           M +    P+  T++ILI  F   G+++    L+E+M S   +P+   ++ L+    ++ K
Sbjct: 577 MLNMNLVPDNITFSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKGYSLKGK 636

Query: 433 SDDLLVAGKLLIEMVDR 449
           ++ ++    +L +M D+
Sbjct: 637 TEKVV---SMLQQMADK 650



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 135/285 (47%), Gaps = 4/285 (1%)

Query: 130 KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV 189
           K   + P    F ++ +      +   A +++ +M E G   ++ ++N ++D      K+
Sbjct: 403 KEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKL 462

Query: 190 EKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
            KA  L+K         +  +Y V+ NG C ++  + A  +  +    G  P ++ YN +
Sbjct: 463 TKALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTL 522

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           +    R   +E+A   F EM+    + DVV++  I+ G    G+++ A+ +   M+N  +
Sbjct: 523 MASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNL 582

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
           +P   T++ +I    K   ++ A  ++E MV  G++P++  ++ +++G    G+ E+ + 
Sbjct: 583 VPDNITFSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKGYSLKGKTEKVVS 642

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAG---EIERGLELFEKMGS 410
            + +M D +   + +  + ++   C+     +IE+ L  F +  S
Sbjct: 643 MLQQMADKDVVLDSKLTSTILACLCNMSKDVDIEKILPKFSQHTS 687


>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
          Length = 563

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 173/342 (50%), Gaps = 3/342 (0%)

Query: 144 IAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF 203
           I   +V +   ++A+  F  M   G     N+FN +L LL K    EKA+ +F   +G  
Sbjct: 101 IINAHVRSQLPEQALFYFNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFNETKGNV 160

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
           K DV S+ ++  G C V   +K  EVL +M + GL+PN+  Y  ++ G  + G IE   +
Sbjct: 161 KLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQ 220

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
            F +M +     +  TYT +++GF  +G  K    +++ M   G++P+V TYN+MI   C
Sbjct: 221 LFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCC 280

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
               + NA  +F+EM  +G   N  TYN +I GLC    +  A   + RMK D   PN+ 
Sbjct: 281 NDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLI 340

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
           +YN LI  +C  G +++   LF +M S    P+L TYNILI+     K S  +     ++
Sbjct: 341 SYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVT---DMV 397

Query: 444 IEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
            EM  RG  P K T+  +++ L+   N   A +I     + G
Sbjct: 398 REMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAG 439



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/378 (26%), Positives = 178/378 (47%), Gaps = 12/378 (3%)

Query: 90  FNILSYHPTYAHSPSS--FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
           F +L        SP+   +   ID   +  D      L ++M  L +   Q T+ ++   
Sbjct: 184 FEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLING 243

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-D 206
           +   G     ++++  M   G   ++ ++N+++   C + K+  A+ LF   R +  A +
Sbjct: 244 FFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACN 303

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           V++YN +  G C  +R  +A  ++  M   GL+PNL +YN ++ GY   G +++A   F 
Sbjct: 304 VVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFN 363

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD---GMVNGGVLPSVATYNAMIQVLC 323
           +MK       + TY  ++ GF    E K +  V D    M   G+ PS  TY  ++  L 
Sbjct: 364 QMKSSGQSPSLATYNILIAGF---SEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALV 420

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
           + D++E A  ++  M   G + +   Y V+I GLC  G+M+ A +    + +   +PN  
Sbjct: 421 RSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDV 480

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
            YN +I  +C  G   R L L ++MG    +PN+ +YN   S++ +  K +    A  LL
Sbjct: 481 IYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYN---STIQILCKDEKWTEAEVLL 537

Query: 444 IEMVDRGFMPRKFTFNRV 461
            +M++ G  P    +N +
Sbjct: 538 KDMIELGLKPSISIWNMI 555



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 85/169 (50%), Gaps = 6/169 (3%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLA--ARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           KA   FN +    +   SPS   + I +A  +  ++   V  +V  M++  L P++ T+ 
Sbjct: 357 KASSLFNQMK---SSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYT 413

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RG 201
           I+ +  V +   ++A +I+ SM + G    +  +  ++  LC    +++A  LFK     
Sbjct: 414 ILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEM 473

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250
             K + + YN +  G+C    + +AL +LKEM + G+ PN+ +YN  ++
Sbjct: 474 HLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQ 522



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 84/180 (46%), Gaps = 4/180 (2%)

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
           V  + A+I    +    E A+  F +M+G+G +P S T+N ++  L  +   E+A     
Sbjct: 95  VLIHEAIINAHVRSQLPEQALFYFNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFN 154

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
             K +  + +V ++ I+I+  C+ G +++G E+  +M      PN+  Y  LI       
Sbjct: 155 ETKGN-VKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCC--- 210

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           K+ D+    +L  +M +   +  ++T+  ++NG   +G +    E+       G +P  +
Sbjct: 211 KNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVY 270


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 116/390 (29%), Positives = 191/390 (48%), Gaps = 11/390 (2%)

Query: 80  WNHALKALHFFN-ILSYHPTYAHSPSSFDHAIDLA--ARLRDYRTVWTLVHRMKSLSLGP 136
           +N   +AL  FN +L   P     PS  D A  L   A ++ Y TV +L  +M SL +  
Sbjct: 52  FNTIDEALSSFNRMLHMQP----PPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPS 107

Query: 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF 196
              T AI+   +    + D    +   + + G +    +F T++  LC E K+ +A +LF
Sbjct: 108 DVYTLAIVINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLF 167

Query: 197 KVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
               G+ F+ + ++Y  + +G C V  +  A+ +L+ MV +   PN+ TYN ++   F+ 
Sbjct: 168 DKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKD 227

Query: 256 GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
            Q+ EA   F EM  +    +V TY +I+HG     E K    + + MV+  ++P+V  +
Sbjct: 228 RQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIF 287

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
             ++  LCK+  V  A  V + M+ +G  P+  TY  ++ G C   EM+ A +    M  
Sbjct: 288 TTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVR 347

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
             C PNV +Y+ LI  +C    I++ + LFE+M     +PN+ TYN LI  +    +  D
Sbjct: 348 KGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRD 407

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
              A  L  EMV  G +P   T+  +L+ L
Sbjct: 408 ---AIALFHEMVASGQIPDLVTYRILLDYL 434



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 109/377 (28%), Positives = 188/377 (49%), Gaps = 6/377 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   + R       +   M +  + P   T+  I        +      +   M
Sbjct: 216 TYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEM 275

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKR 222
            +     ++  F T++D LCKE  V  A+++  V   RG  + DV++Y  + +G CL   
Sbjct: 276 VDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRG-VEPDVVTYTALMDGHCLRSE 334

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
            ++A +V   MV +G  PN+ +Y+ ++ GY +  +I++A   F EM +R+   ++VTY T
Sbjct: 335 MDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNT 394

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++HG   VG ++ A  +F  MV  G +P + TY  ++  LCK   ++ A+ + + + G  
Sbjct: 395 LIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSN 454

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
             P+  +YN+VI G+C  GE+E A +    +      P+V TY I+I   C  G +    
Sbjct: 455 LAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEAT 514

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           +LF +M +  C P+  TYN LI+  F+R  +++ L A +LL EM+ RGF     T   ++
Sbjct: 515 KLFREMNTDGCSPDDCTYN-LITRGFLR--NNETLSAIQLLQEMLGRGFSADASTITLIV 571

Query: 463 NGLLLIGNQGLAKEILR 479
             L   G     K+IL 
Sbjct: 572 EMLSDDGLDQSVKQILH 588


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 181/348 (52%), Gaps = 4/348 (1%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           + T+W +   M +    P   T+  + +     G   +A ++F  M E     ++  +  
Sbjct: 174 FDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTI 233

Query: 179 ILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           ++  LC E ++ +A ++F+  R      ++ +YN + +G+C +    KALE+ +EM+  G
Sbjct: 234 LIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDG 293

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
           L PN+ T+ I++ G  +  ++  A +F ++M       ++  Y  ++ G+   G +  A 
Sbjct: 294 LLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEAL 353

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
           ++   +    +LP V TY+ +I+ LC  D +E A  + +EM  KG++PN+ TYN +I G 
Sbjct: 354 SLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGY 413

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
           C  G ME+A+E   +M +   EPN+ T++ LI  +C AG++E  + L+ +M     LP++
Sbjct: 414 CKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDV 473

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
             Y  LI   F   K  +   A +L  EM + G  P  FT + +++GL
Sbjct: 474 VAYTALIDGHF---KDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGL 518



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 98/290 (33%), Positives = 153/290 (52%), Gaps = 7/290 (2%)

Query: 203 FKADVI----SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
           +K DV+    + N++ +G     R +   +V  +MV RG +PN+ TY  ++ G  R G  
Sbjct: 150 YKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDF 209

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
            +A+R F EM ++K    VV YT ++ G      I  A ++F  M N G+LP++ TYN M
Sbjct: 210 LKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTM 269

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           +   CK   V+ A+ +++EM+G G +PN  T+ ++I GLC T EM  A +F+  M     
Sbjct: 270 MDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGV 329

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
            PN+  YN LI  +C AG +   L L  ++     LP++ TY+ILI  +      D +  
Sbjct: 330 VPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLC---GVDRMEE 386

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           A  LL EM  +GF+P   T+N +++G    GN   A E+    +  G  P
Sbjct: 387 ADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEP 436



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 151/324 (46%), Gaps = 1/324 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   ID   R  D+   + L   M    + PT   + I+        +   A  +F +M
Sbjct: 195 TYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTM 254

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
              G   +L ++NT++D  CK   V+KA  L++   G     +V+++ ++ +G C     
Sbjct: 255 RNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEM 314

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
             A + L +M   G+ PN+  YN ++ GY +AG + EA     E++K +   DV TY+ +
Sbjct: 315 VSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSIL 374

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G   V  ++ A  +   M   G LP+  TYN +I   CK+ ++E AI V  +M  KG 
Sbjct: 375 IKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGI 434

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN  T++ +I G C  G+ME A+     M      P+V  Y  LI      G  +    
Sbjct: 435 EPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFR 494

Query: 404 LFEKMGSGVCLPNLDTYNILISSM 427
           L ++M      PN+ T + LI  +
Sbjct: 495 LHKEMQEAGLHPNVFTLSCLIDGL 518



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 135/288 (46%), Gaps = 4/288 (1%)

Query: 54  RTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLA 113
           RT+  +   P+L+    ++D   K    H  KAL  +  +        +  +F   ID  
Sbjct: 252 RTMRNSGMLPNLYTYNTMMDGYCK--IAHVKKALELYQEM-LGDGLLPNVVTFGILIDGL 308

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            +  +  +    +  M S  + P    +  + + Y  AG    A+ +   + +H     +
Sbjct: 309 CKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDV 368

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKE 232
            +++ ++  LC   ++E+A  L +  + K F  + ++YN + +G+C      KA+EV  +
Sbjct: 369 FTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQ 428

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M ++G+ PN+ T++ ++ GY +AG++E A   + EM  +    DVV YT ++ G    G 
Sbjct: 429 MTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGN 488

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
            K A  +   M   G+ P+V T + +I  LCK   + +AI +F    G
Sbjct: 489 TKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTG 536



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 41/233 (17%), Positives = 84/233 (36%), Gaps = 45/233 (19%)

Query: 177 NTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
            +++ +      V  A+N+F     K   ++IS+  + + +   +R NKAL++ ++M   
Sbjct: 670 TSLISMYSATGNVADAHNMFDEIPSK---NLISWTSVISAYVDNQRPNKALQLFRQMQMD 726

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
            + P++ T  + L      G ++        ++ R  + D+    ++++ +   GEI  A
Sbjct: 727 DVQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLNNSLINMYSKCGEIGTA 786

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
           R                                              +PN  T+  V+  
Sbjct: 787 RRF-----------------------------------------SLVLPNDVTFMGVLMA 805

Query: 357 LCHTGEMERALEFVGRMKDD-ECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
             H G +E   +    MK+D    P +  +  ++   C AG +    E   KM
Sbjct: 806 CSHAGLVEEGKQHFRSMKEDYSLRPRISHFGCMVDLLCRAGLLTEAYEFILKM 858



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 56/319 (17%), Positives = 120/319 (37%), Gaps = 29/319 (9%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F   ID   +         L   M    L P    +  + + +   G    A ++   M
Sbjct: 440 TFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEM 499

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTN 224
            E G   ++ + + ++D LCK+ ++  A    K+F  K   D            L +  +
Sbjct: 500 QEAGLHPNVFTLSCLIDGLCKDGRISDA---IKLFLAKTGTDTTGSKTNELDRSLYQMCS 556

Query: 225 KALEVLKEMVDRGL---------------NPNLTTY------NIVLKGYFRAGQIEEAWR 263
            AL + + + +  +                 +L T+      N  LK Y ++    +   
Sbjct: 557 LALSLFRGISEPCICVIRVTKLFATNNQPKAHLHTHLKPPKSNQTLKRYLQSSNTSKVLL 616

Query: 264 FF-LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322
           FF + ++K    ID  +    +    +   +   + +   ++N G  P +    ++I + 
Sbjct: 617 FFRILLRKNPSSIDSFSLMFALKACTLKSSLVEGKQMHALVINFGFEPIIFLQTSLISMY 676

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
               +V +A  +F+E+  K    N  ++  VI          +AL+   +M+ D+ +P++
Sbjct: 677 SATGNVADAHNMFDEIPSK----NLISWTSVISAYVDNQRPNKALQLFRQMQMDDVQPDI 732

Query: 383 QTYNILIRYFCDAGEIERG 401
            T  + +    D G ++ G
Sbjct: 733 VTVTVALSACADLGALDMG 751


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 105/347 (30%), Positives = 188/347 (54%), Gaps = 7/347 (2%)

Query: 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK 197
           Q ++A +       G    A+K+   +     + ++  ++TI+D LCK + V +AY LF 
Sbjct: 412 QVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFS 471

Query: 198 VFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256
               K   ADV++Y+ +  G+C+V +  +A+ +L EMV + +NP++ TY I++    + G
Sbjct: 472 EMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEG 531

Query: 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
           +++EA      M K   + DV TY T+++G+ +V E+K+A++VF+ M   GV P V TY 
Sbjct: 532 KVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYT 591

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
            +I   CK   V+ A+ +F+EM  K  +P++ TY+ ++ GLC +G +    + +  M+D 
Sbjct: 592 ILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDR 651

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
               +V TYN LI   C  G +++ + LF KM      PN  T+ IL+  +    K   L
Sbjct: 652 GQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLC---KGGRL 708

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
             A ++  +++ +G+    + +N ++ G      QGL +E L + S+
Sbjct: 709 KDAQEVFQDLLTKGYHLDVYIYNVMIYGHC---KQGLLEEALTMLSK 752



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 174/348 (50%), Gaps = 4/348 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           +   ID   + +     + L   M    +     T++ +   +   GK   A+ +   M 
Sbjct: 450 YSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMV 509

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV-FRGKFKADVISYNVIANGWCLVKRTN 224
                  + ++  ++D L KE KV++A ++  V  +   K DV +YN + NG+ LV    
Sbjct: 510 LKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVK 569

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           KA  V   M   G+ P++ TY I++ G+ ++  ++EA   F EM ++    D VTY+++V
Sbjct: 570 KAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLV 629

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            G    G I    ++ D M + G    V TYN++I  LCK   ++ AI +F +M  +G  
Sbjct: 630 DGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIR 689

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           PN+ T+ +++ GLC  G ++ A E    +       +V  YN++I   C  G +E  L +
Sbjct: 690 PNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTM 749

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
             KM    C+PN  T++I+I+++F + ++D    A KLL +M+ RG +
Sbjct: 750 LSKMEENGCIPNAVTFDIIINALFKKDENDK---AEKLLRQMIARGLL 794



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 114/410 (27%), Positives = 197/410 (48%), Gaps = 10/410 (2%)

Query: 85  KALHFFN--ILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           KAL+ F   ILS  P        F+  +D  A+++ Y T  +L HR++   + P   T  
Sbjct: 291 KALNLFKEMILSRFPPIIQ----FNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLN 346

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRG 201
           I+   +   G+      +   + + G   S  + NT++  LC + +V+KA +   K+   
Sbjct: 347 ILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQ 406

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
            F+ + +SY  + NG C +  T  A+++L+++  R   PN+  Y+ ++    +   + EA
Sbjct: 407 GFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEA 466

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
           +  F EM  +    DVVTY+T+++GF +VG++K A  + + MV   + P V TY  ++  
Sbjct: 467 YGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDA 526

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           L K+  V+ A  V   M+     P+  TYN ++ G     E+++A      M      P+
Sbjct: 527 LGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPD 586

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
           V TY ILI  FC +  ++  L LF++M     +P+  TY+ L+  +    KS  +     
Sbjct: 587 VHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLC---KSGRISYVWD 643

Query: 442 LLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           L+ EM DRG      T+N +++GL   G+   A  +       G  P  F
Sbjct: 644 LIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTF 693



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 102/344 (29%), Positives = 180/344 (52%), Gaps = 7/344 (2%)

Query: 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK 197
           Q ++A +       G    A+K    +     + ++  +NTI+D LCK + V +AY LF 
Sbjct: 98  QVSYATLINGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFS 157

Query: 198 VFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256
               K   A+V++Y+ +  G+C+V +  +AL +L  MV + +NPN+ TYNI++    + G
Sbjct: 158 EMTVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEG 217

Query: 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
           +++EA      M K   + +V+TY+T++ G+ +V E+K+A++VF+ M   GV P V +YN
Sbjct: 218 KVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYN 277

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
            MI   CK   V+ A+ +F+EM+   + P    +N ++           A+    R++  
Sbjct: 278 IMINGFCKIKRVDKALNLFKEMILSRF-PPIIQFNKILDSFAKMKHYSTAVSLSHRLELK 336

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
             +P++ T NILI  FC  G+I  G  +  K+      P+  T N LI  + ++ +    
Sbjct: 337 GIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKA 396

Query: 437 L-VAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           L    KLL +    GF   + ++  ++NG+  IG+   A ++LR
Sbjct: 397 LHFHDKLLAQ----GFQLNQVSYATLINGVCKIGDTRGAIKLLR 436



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 164/349 (46%), Gaps = 3/349 (0%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           T++ + + Y    +  +A  +F +M   G    ++S+N +++  CK K+V+KA NLFK  
Sbjct: 240 TYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEM 299

Query: 200 RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
                  +I +N I + +  +K  + A+ +   +  +G+ P+L T NI++  +   GQI 
Sbjct: 300 ILSRFPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQIT 359

Query: 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319
             +    ++ KR      VT  T++ G  + G++K+A +  D ++  G   +  +Y  +I
Sbjct: 360 FGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLI 419

Query: 320 QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
             +CK      AI +  ++ G+   PN   Y+ +I  LC    +  A      M      
Sbjct: 420 NGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGIS 479

Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA 439
            +V TY+ LI  FC  G+++  + L  +M      P++ TY IL+ ++    K  +   A
Sbjct: 480 ADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKE---A 536

Query: 440 GKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             +L  M+     P  FT+N ++NG LL+     A+ +    S  G  P
Sbjct: 537 KSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTP 585



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 159/311 (51%), Gaps = 10/311 (3%)

Query: 175 SFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           + NT++  LC + +V++A +   K+    F+ + +SY  + NG C +  T  A++ L+++
Sbjct: 65  TLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCRIGDTRAAIKFLRKI 124

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
             R   PN+  YN ++    +   + EA+  F EM  +    +VVTY+T+++GF +VG++
Sbjct: 125 DGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKL 184

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           K A  + + MV   + P+V TYN ++  LCK+  V+ A  V   M+      N  TY+ +
Sbjct: 185 KEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTL 244

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           + G     E+++A      M      P+V +YNI+I  FC    +++ L LF++M     
Sbjct: 245 MDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSR- 303

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN-----GLLLI 468
            P +  +N ++ S F + K     V+    +E+  +G  P  FT N ++N     G +  
Sbjct: 304 FPPIIQFNKILDS-FAKMKHYSTAVSLSHRLEL--KGIQPDLFTLNILINCFCHMGQITF 360

Query: 469 GNQGLAKEILR 479
           G   LAK + R
Sbjct: 361 GFSVLAKILKR 371



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 83/365 (22%), Positives = 174/365 (47%), Gaps = 5/365 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           ++  ID   + +     + L   M    +     T++ +   +   GK   A+ +   M 
Sbjct: 136 YNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMV 195

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV-FRGKFKADVISYNVIANGWCLVKRTN 224
                 ++ ++N ++D LCKE KV++A ++  V  +   K++VI+Y+ + +G+ LV    
Sbjct: 196 LKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVK 255

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           KA  V   M   G+ P++ +YNI++ G+ +  ++++A   F EM   +    ++ +  I+
Sbjct: 256 KAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFP-PIIQFNKIL 314

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
             F  +     A ++   +   G+ P + T N +I   C    +     V  +++ +GY 
Sbjct: 315 DSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYP 374

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           P++ T N +I+GLC  G++++AL F  ++     + N  +Y  LI   C  G+    ++L
Sbjct: 375 PSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKL 434

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
             K+   +  PN++ Y+ +I ++   +   +   A  L  EM  +G      T++ ++ G
Sbjct: 435 LRKIDGRLTKPNVEMYSTIIDALCKYQLVSE---AYGLFSEMTVKGISADVVTYSTLIYG 491

Query: 465 LLLIG 469
             ++G
Sbjct: 492 FCIVG 496



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 119/242 (49%), Gaps = 9/242 (3%)

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
           +L VL +++ RG  P+  T N ++KG    GQ++EA  F  ++  +  +++ V+Y T+++
Sbjct: 47  SLSVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLIN 106

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
           G   +G+ + A      +      P+V  YN +I  LCK   V  A  +F EM  KG   
Sbjct: 107 GVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISA 166

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           N  TY+ +I G C  G+++ AL  +  M      PNV TYNIL+   C  G+++    + 
Sbjct: 167 NVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVL 226

Query: 406 EKMGSGVCLPNLDTYNILISSMFV---RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
             M       N+ TY+ L+   F+    KK+  +  A  L+      G  P   ++N ++
Sbjct: 227 AVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLM------GVTPDVHSYNIMI 280

Query: 463 NG 464
           NG
Sbjct: 281 NG 282



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 125/269 (46%), Gaps = 4/269 (1%)

Query: 195 LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           L K+ +  +  D ++ N +  G CL  +  +AL    +++ +G   N  +Y  ++ G  R
Sbjct: 51  LTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCR 110

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G    A +F  ++  R  + +V  Y TI+        +  A  +F  M   G+  +V T
Sbjct: 111 IGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVT 170

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y+ +I   C    ++ A+ +   MV K   PN  TYN+++  LC  G+++ A   +  M 
Sbjct: 171 YSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVML 230

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
               + NV TY+ L+  +    E+++   +F  M      P++ +YNI+I+     K+ D
Sbjct: 231 KACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVD 290

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
             L    L  EM+   F P    FN++L+
Sbjct: 291 KAL---NLFKEMILSRF-PPIIQFNKILD 315



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 3/181 (1%)

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
           +V   ++  G  P   T N +I+ LC K  V+ A+   ++++ +G+  N  +Y  +I G+
Sbjct: 49  SVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGV 108

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
           C  G+   A++F+ ++     +PNV+ YN +I   C    +     LF +M       N+
Sbjct: 109 CRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANV 168

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
            TY+ LI    +  K  + L    LL  MV +   P   T+N +++ L   G    AK +
Sbjct: 169 VTYSTLIYGFCIVGKLKEAL---GLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSV 225

Query: 478 L 478
           L
Sbjct: 226 L 226


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 101/398 (25%), Positives = 190/398 (47%), Gaps = 41/398 (10%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L  +M      P   T+  +       G  + A+++  SM +  C+  +  + +I+D LC
Sbjct: 159 LFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLC 218

Query: 185 KEKKVEKAYNLF------------------------------------KVFRGKFKADVI 208
           K+++V +A+NLF                                    ++   K   DV+
Sbjct: 219 KDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVV 278

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
            ++ + +  C   +  +A +V+  M+ RG+ PN+ TYN ++ G+    +++EA + F  M
Sbjct: 279 IFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTM 338

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
                  +V++Y T+++G+  +  + +A  +F+ M    ++P+  TYN ++  LC    +
Sbjct: 339 VHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRL 398

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           ++AI +F EMV  G +P+  TY +++  LC    ++ A+  +  ++    +P++Q Y I+
Sbjct: 399 QDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIV 458

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           I   C AGE+E   ++F  + S    PN+ TY I+I+ +  R   D+   A KL +EM  
Sbjct: 459 IDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDE---ANKLFMEMDG 515

Query: 449 RGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGR 486
            G  P   T+N +  GLL   N+   + I  LQ    R
Sbjct: 516 NGCSPDGCTYNTITQGLL--QNKEALRAIQLLQEMLAR 551



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 109/388 (28%), Positives = 189/388 (48%), Gaps = 7/388 (1%)

Query: 80  WNHALKALHFFN-ILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQ 138
           +N    AL  FN +L  HP    S   F+  +   A+ + Y TV++L ++M S  + P  
Sbjct: 45  FNTLDDALSSFNRMLHMHP--PPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDV 102

Query: 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV 198
            T  I+   +    +   A  +   + + G +    +F T++  LC E K+  A +LF  
Sbjct: 103 YTLNILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDK 162

Query: 199 FRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
             G+ F+ +V++Y  + NG C V  TN A+ +L+ M      P++  Y  ++    +  Q
Sbjct: 163 MIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQ 222

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           + EA+  F +M  +    D+ TYT+++H    + E K    + + M+N  ++P V  ++ 
Sbjct: 223 VTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFST 282

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           ++  LCK+  +  A  V + M+ +G  PN  TYN ++ G C   EM+ A++    M  + 
Sbjct: 283 VVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNG 342

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
             PNV +YN LI  +C    +++   LFE+M     +PN  TYN L+  +    +  D  
Sbjct: 343 YAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQD-- 400

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            A  L  EMV  G +P   T+  +L+ L
Sbjct: 401 -AIALFHEMVAHGQIPDLATYRILLDYL 427



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 176/344 (51%), Gaps = 6/344 (1%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID   + R     + L  +M    + P   T+  +     +  +      +   M     
Sbjct: 214 IDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKI 273

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKAL 227
              +  F+T++D LCKE K+ +A+++    + RG  + +V++YN + +G CL    ++A+
Sbjct: 274 MPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRG-VEPNVVTYNALMDGHCLQSEMDEAV 332

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
           +V   MV  G  PN+ +YN ++ GY +  ++++A   F EM +++   + VTY T++HG 
Sbjct: 333 KVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGL 392

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
             VG ++ A  +F  MV  G +P +ATY  ++  LCKK  ++ A+ + + + G    P+ 
Sbjct: 393 CHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDI 452

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
             Y +VI G+C  GE+E A +    +      PNV+TY I+I   C  G ++   +LF +
Sbjct: 453 QIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFME 512

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
           M    C P+  TYN +   +   K++   L A +LL EM+ RGF
Sbjct: 513 MDGNGCSPDGCTYNTITQGLLQNKEA---LRAIQLLQEMLARGF 553



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 146/290 (50%), Gaps = 1/290 (0%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           F   +D   +         +V  M    + P   T+  + + +    + D AVK+F +M 
Sbjct: 280 FSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMV 339

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTN 224
            +G   ++ S+NT+++  CK ++++KA  LF+ + + +   + ++YN + +G C V R  
Sbjct: 340 HNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQ 399

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
            A+ +  EMV  G  P+L TY I+L    +   ++EA      ++    + D+  YT ++
Sbjct: 400 DAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVI 459

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            G    GE++ AR++F  + + G+ P+V TY  MI  LC++  ++ A  +F EM G G  
Sbjct: 460 DGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCS 519

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
           P+  TYN + +GL    E  RA++ +  M       +V T  +L+   CD
Sbjct: 520 PDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLCD 569



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 114/256 (44%), Gaps = 2/256 (0%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII 144
           +A+  F+ +  H  YA +  S++  I+   +++       L   M    L P   T+  +
Sbjct: 330 EAVKVFDTM-VHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTL 388

Query: 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-F 203
                  G+   A+ +F  M  HG    L ++  +LD LCK+  +++A  L K   G   
Sbjct: 389 MHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNM 448

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
             D+  Y ++ +G C       A ++   +  +GL PN+ TY I++ G  R G ++EA +
Sbjct: 449 DPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANK 508

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
            F+EM    C  D  TY TI  G     E  RA  +   M+  G    V+T   ++++LC
Sbjct: 509 LFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLC 568

Query: 324 KKDSVENAILVFEEMV 339
                ++   +  E V
Sbjct: 569 DDKLDQSVKQILSEFV 584



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 3/154 (1%)

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
           +++++A+  F  M+     P++  +N ++  +  T +         +M      P+V T 
Sbjct: 46  NTLDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTL 105

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           NILI  FC          +  K+      P+  T+  LI  + V  K  D L    L  +
Sbjct: 106 NILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDAL---HLFDK 162

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           M+  GF P   T+  ++NGL  +GN   A  +LR
Sbjct: 163 MIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLR 196


>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
 gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
          Length = 420

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 114/351 (32%), Positives = 180/351 (51%), Gaps = 15/351 (4%)

Query: 112 LAARLRDYRTVWTL--VHRMKSLSLGPTQKTFAIIAERYVSA----GKADRAVKIFLSMH 165
           LA R R  R + +   ++R K L+   +Q T  I   R ++     G+   A++IF  M 
Sbjct: 62  LAVRTRRRRGIPSSLRIYRPKLLN---SQDTDVISYSRKINGLCKKGQIAEAMEIFREME 118

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTN 224
           E G      ++N +++ LCK+ ++E   +L    + + F   V++Y  + +G+C   R +
Sbjct: 119 EKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVD 178

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR--KCEIDVVTYTT 282
            A+++L EM  RG+ PN  TY  +++G    G++E A     EMK R  +C  +VVTYT 
Sbjct: 179 AAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQ 238

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++HG    G  +      D M+  G  P+ ATY A+I  LC+K S   A ++  EMV  G
Sbjct: 239 LIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIG 298

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
              +   YN +I GLC  GE++ A E    M +    P+V TY  LI+  CDAG ++  L
Sbjct: 299 CELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEAL 358

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
            L ++M +   +PN  TY  LI+      ++D  L   +L+ EM   G MP
Sbjct: 359 GLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHAL---QLVNEMKSNGLMP 406



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 103/291 (35%), Positives = 148/291 (50%), Gaps = 12/291 (4%)

Query: 196 FKVFRGKF----KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
            +++R K       DVISY+   NG C   +  +A+E+ +EM ++G  P+  TYNI++ G
Sbjct: 76  LRIYRPKLLNSQDTDVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILING 135

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
             +  Q+E       EM+ R     VVTYTT++HGF   G +  A ++ D M + G+ P+
Sbjct: 136 LCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPN 195

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGY--MPNSTTYNVVIRGLCHTGEMERALEF 369
             TY A+IQ LC    VE AILV +EM  +G    PN  TY  +I GLC  G  E  +EF
Sbjct: 196 TVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEF 255

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
           +  M    C PN  TY  LI   C  G       L  +M +  C  ++  YN LI  +  
Sbjct: 256 LDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLC- 314

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
             K  +L  A ++ I MV++G  P  FT+  ++ GL    + GL  E L L
Sbjct: 315 --KMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLC---DAGLLDEALGL 360



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 141/296 (47%), Gaps = 5/296 (1%)

Query: 100 AHSPSSFDHAIDLAARLRDYRTVW--TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRA 157
             +P SF + I +    +D +     +L+  M++    PT  T+  +   + +AG+ D A
Sbjct: 121 GSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAA 180

Query: 158 VKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR---GKFKADVISYNVIA 214
           + I   M   G   +  ++  ++  LC   +VE+A  + K  +    +   +V++Y  + 
Sbjct: 181 MDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLI 240

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
           +G C        +E L EM+  G  PN  TY  ++ G  + G   EA     EM    CE
Sbjct: 241 HGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCE 300

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
           +DVV Y +++ G   +GE+  AR +   MV  GV P V TY ++IQ LC    ++ A+ +
Sbjct: 301 LDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGL 360

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
            +EM  KG +PNS TY  +I G       + AL+ V  MK +   P    Y IL +
Sbjct: 361 MQEMRAKGIVPNSVTYTTLINGFTQADRTDHALQLVNEMKSNGLMPAGDIYKILFK 416



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 127/255 (49%), Gaps = 5/255 (1%)

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
           + ++ +Y+  + G  + GQI EA   F EM+++    D  TY  +++G     +++   +
Sbjct: 88  DTDVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVS 147

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
           + D M   G  P+V TY  +I   C    V+ A+ + +EM  +G  PN+ TY  +I+GLC
Sbjct: 148 LMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLC 207

Query: 359 HTGEMERALEFVGRMK--DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
             GE+ERA+  +  MK   +EC PNV TY  LI   C  G  E G+E  ++M    C PN
Sbjct: 208 DCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPN 267

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKE 476
             TY  LI  +    +    L A  LL EMV  G       +N +++GL  +G    A+E
Sbjct: 268 NATYTALIHGLC---QKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFARE 324

Query: 477 ILRLQSRCGRLPRQF 491
           +  L    G  P  F
Sbjct: 325 MQILMVEKGVAPDVF 339


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 183/346 (52%), Gaps = 10/346 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+ ++   Y  +G+ D+A+++   M        + ++NTIL  LC   K+++A  +
Sbjct: 174 PDVITYNVLIGGYCKSGEIDKALEVLERM---SVAPDVVTYNTILRSLCDSGKLKEAMEV 230

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             +  + +   DVI+Y ++    C      +A+++L EM  +G  P++ TYN+++ G  +
Sbjct: 231 LDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICK 290

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G+++EA +F   M    C+ +V+T+  I+      G    A  +   M+  G  PSV T
Sbjct: 291 EGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVT 350

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           +N +I  LC+K  +  AI V E+M   G +PNS +YN ++ G C   +M+RA+E++  M 
Sbjct: 351 FNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMV 410

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
              C P++ TYN L+   C  G+++  +E+  ++ S  C P L TYN +I  +    K++
Sbjct: 411 SRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTE 470

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
               A +LL EM  +G  P   T++ +L GL   G +G   E +++
Sbjct: 471 ---YAVELLEEMRRKGLKPDIITYSTLLRGL---GREGKVDEAIKI 510



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 175/341 (51%), Gaps = 5/341 (1%)

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADV 207
           +  +GK  +A +I   +   G    + ++N ++   CK  +++KA  + +  R     DV
Sbjct: 151 FCRSGKTKKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALEVLE--RMSVAPDV 208

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           ++YN I    C   +  +A+EVL   + R   P++ TY I+++       + +A +   E
Sbjct: 209 VTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDE 268

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M+K+ C+ DVVTY  +++G    G +  A    + M + G  P+V T+N +++ +C    
Sbjct: 269 MRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGR 328

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
             +A  +  +M+ KG  P+  T+N++I  LC    + RA++ + +M    C PN  +YN 
Sbjct: 329 WMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNP 388

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           L+  FC   +++R +E  E M S  C P++ TYN L++++    K D    A ++L ++ 
Sbjct: 389 LLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVD---AAVEILNQLS 445

Query: 448 DRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            +G  P   T+N V++GL  +G    A E+L    R G  P
Sbjct: 446 SKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKP 486



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 171/373 (45%), Gaps = 39/373 (10%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           ++ +S+ P   T+  I      +GK   A+++     +  C   + ++  +++  C +  
Sbjct: 199 LERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSG 258

Query: 189 VEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           V +A  L    R K  K DV++YNV+ NG C   R ++A++ L  M   G  PN+ T+NI
Sbjct: 259 VGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNI 318

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT---------------------------- 279
           +L+     G+  +A R   +M ++ C   VVT                            
Sbjct: 319 ILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHG 378

Query: 280 -------YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
                  Y  ++HGF    ++ RA    + MV+ G  P + TYN ++  LCK   V+ A+
Sbjct: 379 CVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAV 438

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
            +  ++  KG  P   TYN VI GL   G+ E A+E +  M+    +P++ TY+ L+R  
Sbjct: 439 EILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGL 498

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
              G+++  +++F  M      P+  TYN ++  +    K+     A   L  MV++G  
Sbjct: 499 GREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLC---KAQQTSRAIDFLAYMVEKGCK 555

Query: 453 PRKFTFNRVLNGL 465
           P + T+  ++ G+
Sbjct: 556 PTEATYTILIEGI 568



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 151/326 (46%), Gaps = 42/326 (12%)

Query: 198 VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
           +++G    DVI+   +  G+C   +T KA  +++ + + G  P++ TYN+++ GY ++G+
Sbjct: 133 IYQGDI-PDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLIGGYCKSGE 191

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           I++A      M       DVVTY TI+      G++K A  V D  +     P V TY  
Sbjct: 192 IDKALEVLERMSVAP---DVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTI 248

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           +I+  C    V  A+ + +EM  KG  P+  TYNV+I G+C  G ++ A++F+  M    
Sbjct: 249 LIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYG 308

Query: 378 CEPNVQTYNILIRYFCDAGE-----------------------------------IERGL 402
           C+PNV T+NI++R  C  G                                    + R +
Sbjct: 309 CKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAI 368

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           ++ EKM    C+PN  +YN L+      KK D    A + L  MV RG  P   T+N +L
Sbjct: 369 DVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDR---AIEYLEIMVSRGCYPDIVTYNTLL 425

Query: 463 NGLLLIGNQGLAKEILRLQSRCGRLP 488
             L   G    A EIL   S  G  P
Sbjct: 426 TALCKDGKVDAAVEILNQLSSKGCSP 451



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 146/271 (53%), Gaps = 1/271 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
            ++ M S    P   T  II     S G+   A ++   M   GC  S+ +FN +++ LC
Sbjct: 300 FLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLC 359

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           +++ + +A ++  K+ +     + +SYN + +G+C  K+ ++A+E L+ MV RG  P++ 
Sbjct: 360 RKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIV 419

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN +L    + G+++ A     ++  + C   ++TY T++ G   VG+ + A  + + M
Sbjct: 420 TYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEM 479

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G+ P + TY+ +++ L ++  V+ AI +F +M G    P++ TYN ++ GLC   + 
Sbjct: 480 RRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQT 539

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
            RA++F+  M +  C+P   TY ILI    D
Sbjct: 540 SRAIDFLAYMVEKGCKPTEATYTILIEGIAD 570



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 149/304 (49%), Gaps = 1/304 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M+     P   T+ ++       G+ D A+K   +M  +GC+ ++ + N IL  +C
Sbjct: 265 LLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMC 324

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
              +   A  L   + R      V+++N++ N  C  +   +A++VL++M   G  PN  
Sbjct: 325 STGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSL 384

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           +YN +L G+ +  +++ A  +   M  R C  D+VTY T++      G++  A  + + +
Sbjct: 385 SYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQL 444

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            + G  P + TYN +I  L K    E A+ + EEM  KG  P+  TY+ ++RGL   G++
Sbjct: 445 SSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKV 504

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A++    M+    +P+  TYN ++   C A +  R ++    M    C P   TY IL
Sbjct: 505 DEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTIL 564

Query: 424 ISSM 427
           I  +
Sbjct: 565 IEGI 568



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 139/279 (49%), Gaps = 12/279 (4%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSL----GPTQKT 140
           +A+ F N +   P+Y   P+   H I L +     R  W    R+ S  L     P+  T
Sbjct: 296 EAIKFLNNM---PSYGCKPNVITHNIILRSMCSTGR--WMDAERLLSDMLRKGCSPSVVT 350

Query: 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF- 199
           F I+           RA+ +   M +HGC  +  S+N +L   C+EKK+++A    ++  
Sbjct: 351 FNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMV 410

Query: 200 -RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
            RG +  D+++YN +    C   + + A+E+L ++  +G +P L TYN V+ G  + G+ 
Sbjct: 411 SRGCY-PDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKT 469

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           E A     EM+++  + D++TY+T++ G G  G++  A  +F  M    + PS  TYNA+
Sbjct: 470 EYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAI 529

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
           +  LCK      AI     MV KG  P   TY ++I G+
Sbjct: 530 MLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILIEGI 568



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 139/267 (52%), Gaps = 6/267 (2%)

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           + L+ L+ M+ +G  P++     +++G+ R+G+ ++A R    ++      DV+TY  ++
Sbjct: 124 EGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLI 183

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            G+   GEI +A  V + M    V P V TYN +++ LC    ++ A+ V +  + +   
Sbjct: 184 GGYCKSGEIDKALEVLERM---SVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECY 240

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           P+  TY ++I   C+   + +A++ +  M+   C+P+V TYN+LI   C  G ++  ++ 
Sbjct: 241 PDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKF 300

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
              M S  C PN+ T+NI++ SM    +  D   A +LL +M+ +G  P   TFN ++N 
Sbjct: 301 LNNMPSYGCKPNVITHNIILRSMCSTGRWMD---AERLLSDMLRKGCSPSVVTFNILINF 357

Query: 465 LLLIGNQGLAKEILRLQSRCGRLPRQF 491
           L      G A ++L    + G +P   
Sbjct: 358 LCRKRLLGRAIDVLEKMPKHGCVPNSL 384



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 124/243 (51%), Gaps = 6/243 (2%)

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           NI L+   R G++EE  +F   M  +    DV+  T+++ GF   G+ K+A  + + + N
Sbjct: 110 NIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILEN 169

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G +P V TYN +I   CK   ++ A+ V E M      P+  TYN ++R LC +G+++ 
Sbjct: 170 SGAVPDVITYNVLIGGYCKSGEIDKALEVLERM---SVAPDVVTYNTILRSLCDSGKLKE 226

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           A+E + R    EC P+V TY ILI   C+   + + ++L ++M    C P++ TYN+LI+
Sbjct: 227 AMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLIN 286

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
            +    + D+   A K L  M   G  P   T N +L  +   G    A+ +L    R G
Sbjct: 287 GICKEGRLDE---AIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKG 343

Query: 486 RLP 488
             P
Sbjct: 344 CSP 346



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 143/297 (48%), Gaps = 4/297 (1%)

Query: 63  PSLHWTPQLVDQ-IIKRLWNHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDY 119
           PS    P ++   II R      + +    +LS       SPS  +F+  I+   R R  
Sbjct: 305 PSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLL 364

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
                ++ +M      P   ++  +   +    K DRA++    M   GC   + ++NT+
Sbjct: 365 GRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTL 424

Query: 180 LDLLCKEKKVEKAYNLFKVFRGKFKADV-ISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           L  LCK+ KV+ A  +      K  + V I+YN + +G   V +T  A+E+L+EM  +GL
Sbjct: 425 LTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGL 484

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
            P++ TY+ +L+G  R G+++EA + F +M+    +   VTY  I+ G     +  RA +
Sbjct: 485 KPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAID 544

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
               MV  G  P+ ATY  +I+ +  +   E A+ +  E+  +G++  S+   VV++
Sbjct: 545 FLAYMVEKGCKPTEATYTILIEGIADEGLAEEALELLNELCSRGFVKKSSAEQVVVK 601


>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
 gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 105/374 (28%), Positives = 193/374 (51%), Gaps = 6/374 (1%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
           A+ + Y TV +L ++M    +     T  I+            AV +   M + G +   
Sbjct: 97  AKKKQYSTVVSLCNQMDLFGVAHNDYTLNILINSLCRLSHIHFAVSVLSKMFKLGIQPDS 156

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKE 232
            +F T+++ LC E ++++A  LF    G+    + +++ ++ +  C     ++A  V + 
Sbjct: 157 VTFTTLINGLCNEGRIKEAVELFNEMAGRDAMPNTVTFTILVDVLCKKGMVSEARCVFET 216

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M ++G+ PN+ TYN ++ GY    ++ +A + F  M  + C   V +Y+ +++G+     
Sbjct: 217 MTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRR 276

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           I  A+ +   M    ++P+  TYN ++Q LC   S+  A  +F++M   G +PN  TY++
Sbjct: 277 IDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSI 336

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           ++ GLC  G +E AL+ +  M++ + EP++  YNILI+    AG++E   ELF K+ +  
Sbjct: 337 LLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVAKELFSKLFANG 396

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
             P++ TYNI+I  +     SD+   A KL  +M D GF+P   ++N ++ G L   NQ 
Sbjct: 397 IRPSVRTYNIMIKGLLKEGLSDE---AYKLFRKMEDDGFLPDSCSYNVIIQGFL--QNQD 451

Query: 473 LAKEILRLQSRCGR 486
            +  I  +    GR
Sbjct: 452 PSTAIQLIDEMVGR 465



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 101/365 (27%), Positives = 190/365 (52%), Gaps = 4/365 (1%)

Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           AH+  + +  I+   RL       +++ +M  L + P   TF  +     + G+   AV+
Sbjct: 118 AHNDYTLNILINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVE 177

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWC 218
           +F  M       +  +F  ++D+LCK+  V +A  +F+    K  + ++ +YN + NG+C
Sbjct: 178 LFNEMAGRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYC 237

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
           L    N A +V + MV +G  P++ +Y+I++ GY ++ +I+EA     +M +++   + V
Sbjct: 238 LRLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTV 297

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TY T++ G      +  A+ +F  M + G+LP++ TY+ ++  LCK   +E A+ +   M
Sbjct: 298 TYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSM 357

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
             +   P+   YN++I+G+   G++E A E   ++  +   P+V+TYNI+I+     G  
Sbjct: 358 QERKLEPDIVLYNILIQGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLS 417

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           +   +LF KM     LP+  +YN++I       ++ D   A +L+ EMV R F     TF
Sbjct: 418 DEAYKLFRKMEDDGFLPDSCSYNVIIQGFL---QNQDPSTAIQLIDEMVGRRFSADSSTF 474

Query: 459 NRVLN 463
             +L+
Sbjct: 475 KMLLD 479



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/315 (30%), Positives = 161/315 (51%), Gaps = 4/315 (1%)

Query: 175 SFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           + N +++ LC+   +  A + L K+F+   + D +++  + NG C   R  +A+E+  EM
Sbjct: 123 TLNILINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEM 182

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
             R   PN  T+ I++    + G + EA   F  M ++  E ++ TY  +++G+ +  E+
Sbjct: 183 AGRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEM 242

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
             A  VF+ MV  G  PSV +Y+ +I   CK   ++ A  +  +M  K  +PN+ TYN +
Sbjct: 243 NDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTL 302

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           ++GLCH   +  A E   +M      PN++TY+IL+   C  G +E  L+L   M     
Sbjct: 303 MQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKL 362

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGL 473
            P++  YNILI  MF+  K   L VA +L  ++   G  P   T+N ++ GLL  G    
Sbjct: 363 EPDIVLYNILIQGMFIAGK---LEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDE 419

Query: 474 AKEILRLQSRCGRLP 488
           A ++ R     G LP
Sbjct: 420 AYKLFRKMEDDGFLP 434



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 103/330 (31%), Positives = 161/330 (48%), Gaps = 14/330 (4%)

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE------KAYNLFKVFRGKFKADVI 208
           D A+  F  M     R S       L  + K+K+           +LF V    +     
Sbjct: 68  DDAMASFYRMIHMNPRPSFVELGKFLGSIAKKKQYSTVVSLCNQMDLFGVAHNDY----- 122

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           + N++ N  C +   + A+ VL +M   G+ P+  T+  ++ G    G+I+EA   F EM
Sbjct: 123 TLNILINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEM 182

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
             R    + VT+T +V      G +  AR VF+ M   GV P++ TYNA++   C +  +
Sbjct: 183 AGRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEM 242

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
            +A  VFE MVGKG  P+  +Y+++I G C +  ++ A   + +M + E  PN  TYN L
Sbjct: 243 NDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTL 302

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           ++  C A  +    ELF+KM S   LPNL TY+IL+  +    K   L  A KLL  M +
Sbjct: 303 MQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLC---KHGHLEEALKLLTSMQE 359

Query: 449 RGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           R   P    +N ++ G+ + G   +AKE+ 
Sbjct: 360 RKLEPDIVLYNILIQGMFIAGKLEVAKELF 389


>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 588

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 109/380 (28%), Positives = 186/380 (48%), Gaps = 5/380 (1%)

Query: 80  WNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQK 139
           +N   +AL  FN +  H     S   F+  +   A+ + + T+ +L  +M S  + P   
Sbjct: 48  FNTLDEALSTFNRM-LHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVY 106

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           T AI+        + D A      + + G +    +F T++  LC E K+ +A +LF   
Sbjct: 107 TLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKM 166

Query: 200 RGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
            G+ F+ +V++Y  + NG C V  T+ A+ +L+ M      PN+  ++ ++    +  Q+
Sbjct: 167 IGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQV 226

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
            EA+  F EM  +    ++VTY +++HG   + E K    + + MV+  ++P V T N +
Sbjct: 227 TEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTV 286

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           +  LCK+  V  A  V + M+ +G  PN  TYN ++ G C   E++ A++    M   +C
Sbjct: 287 VDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDC 346

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
             NV +YN LI  +C    +++ + LFE+M      PN  TYN LI  +    +  D   
Sbjct: 347 VANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQD--- 403

Query: 439 AGKLLIEMVDRGFMPRKFTF 458
           A  L  EMV RG +P   T+
Sbjct: 404 AISLFHEMVARGQIPDLVTY 423



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 178/363 (49%), Gaps = 7/363 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L  +M      P   T+  +       G    A+++  SM +  C+ ++  F+T++D LC
Sbjct: 162 LFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLC 221

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K+++V +A+N+F     K    ++++YN + +G C +        ++ EMVD  + P++ 
Sbjct: 222 KDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVF 281

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           T N V+    + G + EA      M  R  E +VVTY  ++ G  +  E+  A  VFD M
Sbjct: 282 TLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTM 341

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           V+   + +V +YN +I   CK  SV+ A+ +FEEM  +   PN+ TYN +I GLCH G +
Sbjct: 342 VHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRL 401

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A+     M      P++ TY  L  Y C    +++ + L + +      P++  Y  +
Sbjct: 402 QDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTI 461

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           +  M    ++ +L  A  L   +  +G  P  +T+N +++GL     QGL  E  +L S 
Sbjct: 462 LDGMC---RAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLC---KQGLLAEASKLFSE 515

Query: 484 CGR 486
             +
Sbjct: 516 MNK 518



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 174/348 (50%), Gaps = 6/348 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           F   ID   + R     + +   M +  + P   T+  +        +      +   M 
Sbjct: 213 FSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMV 272

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRT 223
           +      + + NT++D LCKE  V +A+++    + RG  + +V++YN + +G CL    
Sbjct: 273 DSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRG-VEPNVVTYNALMDGHCLRNEV 331

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A++V   MV +    N+ +YN ++ GY +   +++A   F EM +++   + VTY T+
Sbjct: 332 DVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTL 391

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +HG   VG ++ A ++F  MV  G +P + TY  +   LCK   ++ A+ + + + G  +
Sbjct: 392 IHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNW 451

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+   Y  ++ G+C  GE+E A +    +     +PNV TYNI+I   C  G +    +
Sbjct: 452 DPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASK 511

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
           LF +M    C PN  TYN LI+  F+R  +++ L   +LL EM+ RGF
Sbjct: 512 LFSEMNKNGCSPNDCTYN-LITRGFLR--NNEALRTIELLEEMLARGF 556



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 155/322 (48%), Gaps = 3/322 (0%)

Query: 90  FNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
           FNI S   T   SP+  +++  I    +L +++ V TL++ M    + P   T   + + 
Sbjct: 230 FNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDA 289

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKAD 206
               G    A  +   M   G   ++ ++N ++D  C   +V+ A  +F     K   A+
Sbjct: 290 LCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVAN 349

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           VISYN + NG+C ++  +KA+ + +EM  + L PN  TYN ++ G    G++++A   F 
Sbjct: 350 VISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFH 409

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           EM  R    D+VTY T+         + +A  +   +      P +  Y  ++  +C+  
Sbjct: 410 EMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAG 469

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            +E+A  +F  +  KG  PN  TYN++I GLC  G +  A +    M  + C PN  TYN
Sbjct: 470 ELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYN 529

Query: 387 ILIRYFCDAGEIERGLELFEKM 408
           ++ R F    E  R +EL E+M
Sbjct: 530 LITRGFLRNNEALRTIELLEEM 551



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 117/265 (44%), Gaps = 3/265 (1%)

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           ++AL     M+ +   P+   +N +L    +            +M       DV T   +
Sbjct: 52  DEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIV 111

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++    +  +  A +    ++  G  P   T+  +I+ LC +  +  A+ +F++M+G+G+
Sbjct: 112 INSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGF 171

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN  TY  +I GLC  G    A+  +  M+   C+PNV  ++ LI   C   ++     
Sbjct: 172 QPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFN 231

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           +F +M +    PN+ TYN LI  +    K  +      L+ EMVD   MP  FT N V++
Sbjct: 232 IFSEMITKGISPNIVTYNSLIHGLC---KLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVD 288

Query: 464 GLLLIGNQGLAKEILRLQSRCGRLP 488
            L   G    A +++ +    G  P
Sbjct: 289 ALCKEGMVAEAHDVVDMMIHRGVEP 313



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 81/208 (38%), Gaps = 38/208 (18%)

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           +  A + F+ M++    PS   +N ++  + K       + +  +M   G  P+  T  +
Sbjct: 51  LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAI 110

Query: 353 VI-----------------------------------RGLCHTGEMERALEFVGRMKDDE 377
           VI                                   RGLC  G++  AL    +M  + 
Sbjct: 111 VINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEG 170

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
            +PNV TY  LI   C  G     + L   M  G C PN+  ++ LI S+    K   + 
Sbjct: 171 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLC---KDRQVT 227

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            A  +  EM+ +G  P   T+N +++GL
Sbjct: 228 EAFNIFSEMITKGISPNIVTYNSLIHGL 255


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 110/388 (28%), Positives = 189/388 (48%), Gaps = 8/388 (2%)

Query: 80  WNHALKALHFFN-ILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQ 138
           +N    AL  FN +L  HP    S   F+  +   A+ + Y TV++L ++M S  + P  
Sbjct: 47  FNTLDDALSSFNRMLHMHP--PPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDV 104

Query: 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV 198
            T  I+   +    +   A  +   + + G +    +F T++  LC E K+  A +LF  
Sbjct: 105 YTLNILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDK 164

Query: 199 FRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
             G+ F+ +V++Y  + NG C V  TN A+ +L+ M      P++  Y  ++    +  Q
Sbjct: 165 MIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQ 224

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           + EA+  F +M  +    D+ TYT+++H    + E K    + + M+N  ++P V  ++ 
Sbjct: 225 VTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFST 284

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           ++  LCK+  +  A  V + M+ +G  PN  TYN ++ G C   EM+ A++    M  + 
Sbjct: 285 VVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNG 344

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
             PNV +YN LI  +C    +++   LFE+M     +PN  TYN L+    V +  D   
Sbjct: 345 YAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHXCHVGRLQD--- 401

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            A  L  EMV  G +P   T+  +L+ L
Sbjct: 402 -AIALFHEMVAHGQIPDLATYRILLDYL 428



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 100/398 (25%), Positives = 189/398 (47%), Gaps = 42/398 (10%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L  +M      P   T+  +       G  + A+++  SM +  C+  +  + +I+D LC
Sbjct: 161 LFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLC 220

Query: 185 KEKKVEKAYNLF------------------------------------KVFRGKFKADVI 208
           K+++V +A+NLF                                    ++   K   DV+
Sbjct: 221 KDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVV 280

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
            ++ + +  C   +  +A +V+  M+ RG+ PN+ TYN ++ G+    +++EA + F  M
Sbjct: 281 IFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTM 340

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
                  +V++Y T+++G+  +  + +A  +F+ M    ++P+  TYN ++   C    +
Sbjct: 341 VHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHX-CHVGRL 399

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           ++AI +F EMV  G +P+  TY +++  LC    ++ A+  +  ++    +P++Q Y I+
Sbjct: 400 QDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIV 459

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           I   C AGE+E   ++F  + S    PN+ TY I+I+ +  R   D+   A KL +EM  
Sbjct: 460 IDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDE---ANKLFMEMDG 516

Query: 449 RGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGR 486
            G  P   T+N +  GLL   N+   + I  LQ    R
Sbjct: 517 NGCSPDGCTYNTITQGLL--QNKEALRAIQLLQEMLAR 552



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 175/344 (50%), Gaps = 7/344 (2%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID   + R     + L  +M    + P   T+  +     +  +      +   M     
Sbjct: 216 IDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKI 275

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKAL 227
              +  F+T++D LCKE K+ +A+++    + RG  + +V++YN + +G CL    ++A+
Sbjct: 276 MPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRG-VEPNVVTYNALMDGHCLQSEMDEAV 334

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
           +V   MV  G  PN+ +YN ++ GY +  ++++A   F EM +++   + VTY T++H  
Sbjct: 335 KVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHXC 394

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
            V G ++ A  +F  MV  G +P +ATY  ++  LCKK  ++ A+ + + + G    P+ 
Sbjct: 395 HV-GRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDI 453

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
             Y +VI G+C  GE+E A +    +      PNV+TY I+I   C  G ++   +LF +
Sbjct: 454 QIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFME 513

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
           M    C P+  TYN +   +   K++   L A +LL EM+ RGF
Sbjct: 514 MDGNGCSPDGCTYNTITQGLLQNKEA---LRAIQLLQEMLARGF 554



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 145/290 (50%), Gaps = 2/290 (0%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           F   +D   +         +V  M    + P   T+  + + +    + D AVK+F +M 
Sbjct: 282 FSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMV 341

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTN 224
            +G   ++ S+NT+++  CK ++++KA  LF+ + + +   + ++YN + +  C V R  
Sbjct: 342 HNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMH-XCHVGRLQ 400

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
            A+ +  EMV  G  P+L TY I+L    +   ++EA      ++    + D+  YT ++
Sbjct: 401 DAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVI 460

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            G    GE++ AR++F  + + G+ P+V TY  MI  LC++  ++ A  +F EM G G  
Sbjct: 461 DGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCS 520

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
           P+  TYN + +GL    E  RA++ +  M       +V T  +L+   CD
Sbjct: 521 PDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLCD 570



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 114/256 (44%), Gaps = 3/256 (1%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII 144
           +A+  F+ +  H  YA +  S++  I+   +++       L   M    L P   T+  +
Sbjct: 332 EAVKVFDTM-VHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTL 390

Query: 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-F 203
                  G+   A+ +F  M  HG    L ++  +LD LCK+  +++A  L K   G   
Sbjct: 391 MHX-CHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNM 449

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
             D+  Y ++ +G C       A ++   +  +GL PN+ TY I++ G  R G ++EA +
Sbjct: 450 DPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANK 509

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
            F+EM    C  D  TY TI  G     E  RA  +   M+  G    V+T   ++++LC
Sbjct: 510 LFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLC 569

Query: 324 KKDSVENAILVFEEMV 339
                ++   +  E V
Sbjct: 570 DDKLDQSVKQILSEFV 585



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 3/154 (1%)

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
           +++++A+  F  M+     P++  +N ++  +  T +         +M      P+V T 
Sbjct: 48  NTLDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTL 107

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           NILI  FC    +     +  K+      P+  T+  LI  + V  K  D L    L  +
Sbjct: 108 NILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDAL---HLFDK 164

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           M+  GF P   T+  ++NGL  +GN   A  +LR
Sbjct: 165 MIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLR 198


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/388 (27%), Positives = 183/388 (47%), Gaps = 4/388 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F   I+   +  ++     L   M +    P   T+  I       G+   A  +   M
Sbjct: 163 TFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKM 222

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
            E GC+  + +++T++D LCK++ V +A ++F   + K     V+SY  +  G C   R 
Sbjct: 223 GEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRW 282

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A  +L EM    + P++ T+++++  + + G + EA      M +   E +V+TY ++
Sbjct: 283 KEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSL 342

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +HG+ +  E+  AR +FD M+  G  P V +Y+ +I   C    ++ A  +F EM+ +G 
Sbjct: 343 MHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGL 402

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN+ +Y  +I   C  G++  A E    M  +   P++ TY++L+  FC  G + +   
Sbjct: 403 TPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFR 462

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           LF  M      PNL  Y ILI SM    KS +L  A KL  E+   G  P    +  ++N
Sbjct: 463 LFRAMQGTYLKPNLVMYTILIDSMC---KSGNLNHARKLFSELFVHGLQPDVQIYTTIIN 519

Query: 464 GLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           GL   G    A E  R     G  P +F
Sbjct: 520 GLCKEGLLDEALEAFRKMEEDGCPPNEF 547



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 176/354 (49%), Gaps = 4/354 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   ID   + R       +   MK+  + PT  ++  + +   S  +   A  +   M
Sbjct: 233 TYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEM 292

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRT 223
                   + +F+ ++D+ CKE  V +A  + K       + +VI+YN + +G+ L    
Sbjct: 293 TSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEV 352

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A ++   M+ RG  P++ +Y+I++ GY    +I+EA + F EM  +    + V+YTT+
Sbjct: 353 VEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTL 412

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +H F  +G+++ AR +F  M   G LP + TY+ +++  CK+  +  A  +F  M G   
Sbjct: 413 IHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYL 472

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN   Y ++I  +C +G +  A +    +     +P+VQ Y  +I   C  G ++  LE
Sbjct: 473 KPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALE 532

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
            F KM    C PN  +YN++I   F++ K +   V  +L+ EM D+GF+  + T
Sbjct: 533 AFRKMEEDGCPPNEFSYNVIIRG-FLQHKDESRAV--QLIGEMRDKGFVADEGT 583



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 164/335 (48%), Gaps = 4/335 (1%)

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVI 213
           D  + +   M   G   +  + N +++  C  + V+  ++ L KV +   +  +I++  +
Sbjct: 108 DAVISLSKQMELAGLSPNTCTLNILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTL 167

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
            NG C      +ALE+  +MV RG  P++ TY  ++ G  + G+   A     +M +  C
Sbjct: 168 INGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGC 227

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
           + DVVTY+T++        +  A ++F  M   G+ P+V +Y ++IQ LC     + A  
Sbjct: 228 QPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASA 287

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           +  EM     MP+  T++++I   C  G +  A   +  M +   EPNV TYN L+  + 
Sbjct: 288 MLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYS 347

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
              E+    +LF+ M +  C P++ +Y+ILI+   + K+ D+   A +L  EM+ +G  P
Sbjct: 348 LQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDE---AKQLFNEMIHQGLTP 404

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
              ++  +++    +G    A+E+ +     G LP
Sbjct: 405 NTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLP 439



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 102/377 (27%), Positives = 176/377 (46%), Gaps = 7/377 (1%)

Query: 106 FDHAIDLAARLRDY-RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           F+  +    R+R Y   V +L  +M+   L P   T  I+   +      D    +   +
Sbjct: 93  FNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTLNILINCFCLMQHVDLGFSVLAKV 152

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKR 222
            + G + ++ +F T+++ LCK  +  +A  LF   V RG  + DV +Y  I NG C +  
Sbjct: 153 IKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARG-CQPDVYTYTTIINGLCKMGE 211

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
           T  A  ++K+M + G  P++ TY+ ++    +   + EA   F  MK +     VV+YT+
Sbjct: 212 TAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTS 271

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++ G       K A  + + M +  ++P + T++ +I + CK+ +V  A  V + M   G
Sbjct: 272 LIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMG 331

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
             PN  TYN ++ G     E+  A +    M    C+P+V +Y+ILI  +C    I+   
Sbjct: 332 VEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAK 391

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           +LF +M      PN  +Y  LI +     K   L  A +L  +M   G++P   T++ +L
Sbjct: 392 QLFNEMIHQGLTPNTVSYTTLIHAFCQLGK---LREARELFKDMHTNGYLPDLCTYSVLL 448

Query: 463 NGLLLIGNQGLAKEILR 479
            G    G  G A  + R
Sbjct: 449 EGFCKQGYLGKAFRLFR 465


>gi|449455956|ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Cucumis sativus]
 gi|449492939|ref|XP_004159147.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Cucumis sativus]
          Length = 535

 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 118/414 (28%), Positives = 197/414 (47%), Gaps = 9/414 (2%)

Query: 69  PQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHR 128
           P  +  +I+R  N  L    F     YHP + H+  ++   I   +R R +  V +L+  
Sbjct: 52  PNRLVAMIRRQQNLDLALQIFHYAGKYHPAFTHNYDTYHAIIYRLSRARAFEPVESLLLE 111

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           ++   +  ++  F  +   Y  A +   A+K FL +   G R+S+ S NT+L+ L +  +
Sbjct: 112 LQDSGINCSEDLFITVIRSYGLASRPKMALKTFLRIQTFGVRRSVRSLNTLLNALVQNNR 171

Query: 189 VEKAYNLFKVFRGKFKA--DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
               + LFK  + KF    +V + N++    C       A +V  EM   G+ PN+ TY 
Sbjct: 172 FSSVHLLFKYSKSKFGVVPNVFTCNILIKALCKKNDVEGARKVFDEMPSMGIVPNVVTYT 231

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
            +L GY   G +  A R F E+       D  TYT ++ G+   G    A  V D M   
Sbjct: 232 TILGGYVSRGDMIGAKRVFGELFDHGWLPDATTYTILMDGYVKQGRFTDAVKVMDEMEEN 291

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           GV P+  TY  +I   CK+     A+ +  +M+ K Y+PNS     VI  LC  G ++ A
Sbjct: 292 GVEPNDITYGVIILGYCKERKSGEALNLLNDMLEKKYIPNSALCCKVIDVLCGEGRVKEA 351

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
            +   ++    C P+    + LI + C  G I    +LF +   G  + +L TYN LI+ 
Sbjct: 352 CKMWEKLLKKNCTPDNAITSTLIHWLCKEGNIWEARKLFNEFERGT-ISSLLTYNTLIAG 410

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           M    +  +L  A +L  +M+++G +P +FT+N ++ G L +G    AKE++++
Sbjct: 411 MC---EMGELCEAARLWDDMLEKGCVPNEFTYNMLIKGFLKVGK---AKEVIKV 458



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 168/362 (46%), Gaps = 13/362 (3%)

Query: 94  SYHPTYAHSPSSF---------DHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII 144
           S H  + +S S F         +  I    +  D      +   M S+ + P   T+  I
Sbjct: 174 SVHLLFKYSKSKFGVVPNVFTCNILIKALCKKNDVEGARKVFDEMPSMGIVPNVVTYTTI 233

Query: 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKF 203
              YVS G    A ++F  + +HG      ++  ++D   K+ +   A  +  ++     
Sbjct: 234 LGGYVSRGDMIGAKRVFGELFDHGWLPDATTYTILMDGYVKQGRFTDAVKVMDEMEENGV 293

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
           + + I+Y VI  G+C  +++ +AL +L +M+++   PN      V+      G+++EA +
Sbjct: 294 EPNDITYGVIILGYCKERKSGEALNLLNDMLEKKYIPNSALCCKVIDVLCGEGRVKEACK 353

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
            + ++ K+ C  D    +T++H     G I  AR +F+     G + S+ TYN +I  +C
Sbjct: 354 MWEKLLKKNCTPDNAITSTLIHWLCKEGNIWEARKLFNEF-ERGTISSLLTYNTLIAGMC 412

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
           +   +  A  ++++M+ KG +PN  TYN++I+G    G+ +  ++ V  M D  C  N  
Sbjct: 413 EMGELCEAARLWDDMLEKGCVPNEFTYNMLIKGFLKVGKAKEVIKVVEEMLDKGCLLNES 472

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
           TY IL+      G+ E  L +   + S   + +   +N+ +   FV   ++   +  K+L
Sbjct: 473 TYLILVEGLLKLGKREELLNILSMIISSGAV-DFKAWNLFVPH-FVSNVNEQANILEKIL 530

Query: 444 IE 445
           IE
Sbjct: 531 IE 532


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 109/380 (28%), Positives = 186/380 (48%), Gaps = 5/380 (1%)

Query: 80  WNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQK 139
           +N   +AL  FN +  H     S   F+  +   A+ + + T+ +L  +M S  + P   
Sbjct: 48  FNTLDEALSTFNRM-LHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVY 106

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           T AI+        + D A      + + G +    +F T++  LC E K+ +A +LF   
Sbjct: 107 TLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKM 166

Query: 200 RGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
            G+ F+ +V++Y  + NG C V  T+ A+ +L+ M      PN+  ++ ++    +  Q+
Sbjct: 167 IGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQV 226

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
            EA+  F EM  +    ++VTY +++HG   + E K    + + MV+  ++P V T N +
Sbjct: 227 TEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTV 286

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           +  LCK+  V  A  V + M+ +G  PN  TYN ++ G C   E++ A++    M   +C
Sbjct: 287 VDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDC 346

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
             NV +YN LI  +C    +++ + LFE+M      PN  TYN LI  +    +  D   
Sbjct: 347 VANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQD--- 403

Query: 439 AGKLLIEMVDRGFMPRKFTF 458
           A  L  EMV RG +P   T+
Sbjct: 404 AISLFHEMVARGQIPDLVTY 423



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 178/363 (49%), Gaps = 7/363 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L  +M      P   T+  +       G    A+++  SM +  C+ ++  F+T++D LC
Sbjct: 162 LFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLC 221

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K+++V +A+N+F     K    ++++YN + +G C +        ++ EMVD  + P++ 
Sbjct: 222 KDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVF 281

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           T N V+    + G + EA      M  R  E +VVTY  ++ G  +  E+  A  VFD M
Sbjct: 282 TLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTM 341

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           V+   + +V +YN +I   CK  SV+ A+ +FEEM  +   PN+ TYN +I GLCH G +
Sbjct: 342 VHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRL 401

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A+     M      P++ TY  L  Y C    +++ + L + +      P++  Y  +
Sbjct: 402 QDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTI 461

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           +  M    ++ +L  A  L   +  +G  P  +T+N +++GL     QGL  E  +L S 
Sbjct: 462 LDGMC---RAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLC---KQGLLAEASKLFSE 515

Query: 484 CGR 486
             +
Sbjct: 516 MNK 518



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 174/348 (50%), Gaps = 6/348 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           F   ID   + R     + +   M +  + P   T+  +        +      +   M 
Sbjct: 213 FSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMV 272

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRT 223
           +      + + NT++D LCKE  V +A+++    + RG  + +V++YN + +G CL    
Sbjct: 273 DSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRG-VEPNVVTYNALMDGHCLRNEV 331

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A++V   MV +    N+ +YN ++ GY +   +++A   F EM +++   + VTY T+
Sbjct: 332 DVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTL 391

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +HG   VG ++ A ++F  MV  G +P + TY  +   LCK   ++ A+ + + + G  +
Sbjct: 392 IHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNW 451

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+   Y  ++ G+C  GE+E A +    +     +PNV TYNI+I   C  G +    +
Sbjct: 452 DPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASK 511

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
           LF +M    C PN  TYN LI+  F+R  +++ L   +LL EM+ RGF
Sbjct: 512 LFSEMNKNGCSPNDCTYN-LITRGFLR--NNEALRTIELLEEMLARGF 556



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 155/322 (48%), Gaps = 3/322 (0%)

Query: 90  FNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
           FNI S   T   SP+  +++  I    +L +++ V TL++ M    + P   T   + + 
Sbjct: 230 FNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDA 289

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKAD 206
               G    A  +   M   G   ++ ++N ++D  C   +V+ A  +F     K   A+
Sbjct: 290 LCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVAN 349

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           VISYN + NG+C ++  +KA+ + +EM  + L PN  TYN ++ G    G++++A   F 
Sbjct: 350 VISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFH 409

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           EM  R    D+VTY T+         + +A  +   +      P +  Y  ++  +C+  
Sbjct: 410 EMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAG 469

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            +E+A  +F  +  KG  PN  TYN++I GLC  G +  A +    M  + C PN  TYN
Sbjct: 470 ELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYN 529

Query: 387 ILIRYFCDAGEIERGLELFEKM 408
           ++ R F    E  R +EL E+M
Sbjct: 530 LITRGFLRNNEALRTIELLEEM 551



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 117/265 (44%), Gaps = 3/265 (1%)

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           ++AL     M+ +   P+   +N +L    +            +M       DV T   +
Sbjct: 52  DEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIV 111

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++    +  +  A +    ++  G  P   T+  +I+ LC +  +  A+ +F++M+G+G+
Sbjct: 112 INSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGF 171

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN  TY  +I GLC  G    A+  +  M+   C+PNV  ++ LI   C   ++     
Sbjct: 172 QPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFN 231

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           +F +M +    PN+ TYN LI  +    K  +      L+ EMVD   MP  FT N V++
Sbjct: 232 IFSEMITKGISPNIVTYNSLIHGLC---KLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVD 288

Query: 464 GLLLIGNQGLAKEILRLQSRCGRLP 488
            L   G    A +++ +    G  P
Sbjct: 289 ALCKEGMVAEAHDVVDMMIHRGVEP 313



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 81/208 (38%), Gaps = 38/208 (18%)

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           +  A + F+ M++    PS   +N ++  + K       + +  +M   G  P+  T  +
Sbjct: 51  LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAI 110

Query: 353 VI-----------------------------------RGLCHTGEMERALEFVGRMKDDE 377
           VI                                   RGLC  G++  AL    +M  + 
Sbjct: 111 VINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEG 170

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
            +PNV TY  LI   C  G     + L   M  G C PN+  ++ LI S+    K   + 
Sbjct: 171 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLC---KDRQVT 227

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            A  +  EM+ +G  P   T+N +++GL
Sbjct: 228 EAFNIFSEMITKGISPNIVTYNSLIHGL 255


>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
 gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
 gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
 gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 485

 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 179/367 (48%), Gaps = 7/367 (1%)

Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
            H   S++  I+   R   +    ++V +M      P   T + +   +    +   A+ 
Sbjct: 101 GHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAID 160

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWC 218
           +   M E G R  +  +NTI+D  CK   V  A  LF ++ R   +AD ++YN +  G C
Sbjct: 161 LVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLC 220

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
              R + A  ++++MV R + PN+ T+  V+  + + G+  EA + + EM +R  + DV 
Sbjct: 221 CSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVF 280

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TY ++++G  + G +  A+ + D MV  G LP V TYN +I   CK   V+    +F EM
Sbjct: 281 TYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREM 340

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
             +G + ++ TYN +I+G    G  + A E   RM   +  PN++TY+IL+   C    +
Sbjct: 341 AQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRM---DSRPNIRTYSILLYGLCMNWRV 397

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           E+ L LFE M       ++ TYNI+I  M      +D   A  L   +  +G  P   ++
Sbjct: 398 EKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVED---AWDLFRSLSCKGLKPDVVSY 454

Query: 459 NRVLNGL 465
             +++G 
Sbjct: 455 TTMISGF 461



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 164/333 (49%), Gaps = 7/333 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P+   F+ +  +   +   D  + +F  M   G    L S+N +++ LC+  +   A ++
Sbjct: 67  PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSV 126

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             K+ +  ++ DV++ + + NG+C   R   A++++ +M + G  P++  YN ++ G  +
Sbjct: 127 VGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCK 186

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G + +A   F  M++     D VTY ++V G    G    A  +   MV   ++P+V T
Sbjct: 187 IGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVIT 246

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           + A+I V  K+     A+ ++EEM  +   P+  TYN +I GLC  G ++ A + +  M 
Sbjct: 247 FTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMV 306

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
              C P+V TYN LI  FC +  ++ G +LF +M     + +  TYN +I   F   + D
Sbjct: 307 TKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPD 366

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467
               A ++   M  R   P   T++ +L GL +
Sbjct: 367 ---AAQEIFSRMDSR---PNIRTYSILLYGLCM 393



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 158/336 (47%), Gaps = 5/336 (1%)

Query: 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVI 208
           S+   +  + +F  M +     S+  F+ +L  + K K  +   +LF          D+ 
Sbjct: 46  SSMNLEEEIDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLY 105

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           SYN++ N  C   R   AL V+ +M+  G  P++ T + ++ G+ +  ++ +A     +M
Sbjct: 106 SYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKM 165

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
           ++     DVV Y TI+ G   +G +  A  +FD M   GV     TYN+++  LC     
Sbjct: 166 EEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRW 225

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
            +A  +  +MV +  +PN  T+  VI      G+   A++    M     +P+V TYN L
Sbjct: 226 SDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSL 285

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           I   C  G ++   ++ + M +  CLP++ TYN LI+     K+ D+     KL  EM  
Sbjct: 286 INGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDE---GTKLFREMAQ 342

Query: 449 RGFMPRKFTFNRVLNGLLLIGNQGLAKEIL-RLQSR 483
           RG +    T+N ++ G    G    A+EI  R+ SR
Sbjct: 343 RGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSR 378



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 154/311 (49%), Gaps = 4/311 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           ++  ID + ++        L  RM+   +     T+  +      +G+   A ++   M 
Sbjct: 177 YNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMV 236

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTN 224
                 ++ +F  ++D+  KE K  +A  L++ + R     DV +YN + NG C+  R +
Sbjct: 237 MRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVD 296

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           +A ++L  MV +G  P++ TYN ++ G+ ++ +++E  + F EM +R    D +TY TI+
Sbjct: 297 EAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTII 356

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            G+   G    A+ +F  M +    P++ TY+ ++  LC    VE A+++FE M      
Sbjct: 357 QGYFQAGRPDAAQEIFSRMDSR---PNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIE 413

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
            + TTYN+VI G+C  G +E A +    +     +P+V +Y  +I  FC   + ++   L
Sbjct: 414 LDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLL 473

Query: 405 FEKMGSGVCLP 415
           + KM     LP
Sbjct: 474 YRKMQEDGLLP 484



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 112/249 (44%), Gaps = 3/249 (1%)

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           P++  ++ VL    ++   +     F  M+      D+ +Y  +++          A +V
Sbjct: 67  PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSV 126

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
              M+  G  P V T +++I   C+ + V +AI +  +M   G+ P+   YN +I G C 
Sbjct: 127 VGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCK 186

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419
            G +  A+E   RM+ D    +  TYN L+   C +G       L   M     +PN+ T
Sbjct: 187 IGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVIT 246

Query: 420 YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           +  +I  +FV  K      A KL  EM  R   P  FT+N ++NGL + G    AK++L 
Sbjct: 247 FTAVID-VFV--KEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLD 303

Query: 480 LQSRCGRLP 488
           L    G LP
Sbjct: 304 LMVTKGCLP 312


>gi|297839201|ref|XP_002887482.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333323|gb|EFH63741.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 490

 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 118/416 (28%), Positives = 207/416 (49%), Gaps = 21/416 (5%)

Query: 68  TPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAA----RLRDYRTVW 123
           T  +V +I++RL      A  FF    +   Y+H P +++  ID+ +    + + +R V 
Sbjct: 22  TTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPIAYNEMIDILSSTKYKNKQFRIVI 81

Query: 124 TLVHRMK--SLSLGPTQKTFAII---AERYVS-AGKADRAVKIFLSMHEHGCRQSLNSFN 177
            ++  MK    ++ P      I+    ERY++   K  +  +I +       +  +N+FN
Sbjct: 82  DMLDYMKRNKKTVVPADILLEILRKYCERYLTHVQKFAKRKRIRVKT-----QPEINAFN 136

Query: 178 TILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
            +LD LCK   V++   L +  R + K D  ++NV+  GWC V+   KA+++L+EM+  G
Sbjct: 137 MLLDALCKCGLVKEGEALLRRMRHRVKPDATTFNVLFFGWCRVRDPKKAMKLLEEMIQAG 196

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
             P   TY   +  + +AG ++EA   F  M  +   +   T  T       + +  +A 
Sbjct: 197 HKPENFTYCAAIDTFCQAGMVDEAADLFEFMITKGSVVSAPTAKTFALMIVALAKNDKAE 256

Query: 298 NVFD---GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
             F+    M++ G LP V+TY  +I+ +C    VE A    +EM  KGY P+  TYN  +
Sbjct: 257 ECFELIGRMISTGCLPDVSTYKDVIEGMCMAGKVEEAYKFLDEMSNKGYPPDIVTYNCFL 316

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
           R LC   + + AL+  GRM +  C P+VQTYN+LI  F +  + +     +++M    C+
Sbjct: 317 RVLCENRKSDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDGAFNTWKEMDERDCV 376

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
            +++TY ++I+ +F   ++ +   A  LL E+V++G       F+  L  L  +GN
Sbjct: 377 QDIETYCVMINGLFDCHRAKE---ACFLLEEVVNKGLKLPYRAFDSFLMRLSTVGN 429



 Score = 41.6 bits (96), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 1/119 (0%)

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYN 211
           K+D A+K++  M E  C  S+ ++N ++ +  +    + A+N +K    +    D+ +Y 
Sbjct: 324 KSDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDGAFNTWKEMDERDCVQDIETYC 383

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
           V+ NG     R  +A  +L+E+V++GL      ++  L      G ++   +    MKK
Sbjct: 384 VMINGLFDCHRAKEACFLLEEVVNKGLKLPYRAFDSFLMRLSTVGNLKAIHKLSEHMKK 442


>gi|240255563|ref|NP_190542.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546755|sp|P0C8A0.1|PP275_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49730
 gi|332645062|gb|AEE78583.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 112/413 (27%), Positives = 198/413 (47%), Gaps = 7/413 (1%)

Query: 69  PQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHR 128
           P L+ +++ R  +       FF   +  P Y HS       + + +++R +  VW L+  
Sbjct: 97  PGLIIRVLSRCGDAGNLGYRFFLWATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEE 156

Query: 129 MKSLSLGPTQ-KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           M+  +    + + F ++  R+ SA    +AV++   M ++G       F  +LD LCK  
Sbjct: 157 MRKTNPELIEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNG 216

Query: 188 KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
            V++A  +F+  R KF  ++  +  +  GWC   +  +A EVL +M + GL P++  +  
Sbjct: 217 SVKEASKVFEDMREKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTN 276

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE-IKRARNVFDGMVNG 306
           +L GY  AG++ +A+    +M+KR  E +V  YT ++       + +  A  VF  M   
Sbjct: 277 LLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERY 336

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G    + TY A+I   CK   ++    V ++M  KG MP+  TY  ++       + E  
Sbjct: 337 GCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEEC 396

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
           LE + +MK   C P++  YN++IR  C  GE++  + L+ +M +    P +DT+ I+I+ 
Sbjct: 397 LELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMING 456

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFM--PRKFTFNRVLNGLLLIGNQGLAKEI 477
                    L+ A     EMV RG    P+  T   +LN L+      +AK++
Sbjct: 457 F---TSQGFLIEACNHFKEMVSRGIFSAPQYGTLKSLLNNLVRDDKLEMAKDV 506



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 68/310 (21%), Positives = 131/310 (42%), Gaps = 58/310 (18%)

Query: 89  FFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERY 148
           F N+LS    YAH           A ++ D    + L++ M+     P    + ++ +  
Sbjct: 274 FTNLLS---GYAH-----------AGKMAD---AYDLMNDMRKRGFEPNVNCYTVLIQAL 316

Query: 149 VSAGK-ADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKAD 206
               K  D A+++F+ M  +GC   + ++  ++   CK   ++K Y++    R K     
Sbjct: 317 CRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPS 376

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
            ++Y  I       ++  + LE++++M  RG +P+L  YN+V++   + G+++EA R + 
Sbjct: 377 QVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWN 436

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL--PSVATYNAMIQVLCK 324
           EM+       V T+  +++GF   G +  A N F  MV+ G+   P   T  +++  L +
Sbjct: 437 EMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSAPQYGTLKSLLNNLVR 496

Query: 325 KDSVENAILVFE-------------------------------------EMVGKGYMPNS 347
            D +E A  V+                                      +M+    MP  
Sbjct: 497 DDKLEMAKDVWSCISNKTSSCELNVSAWTIWIHALYAKGHVKEACSYCLDMMEMDLMPQP 556

Query: 348 TTYNVVIRGL 357
            TY  +++GL
Sbjct: 557 NTYAKLMKGL 566



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 92/207 (44%), Gaps = 5/207 (2%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           ++++  M+   + P+Q T+  I   +    + +  +++   M   GC   L  +N ++ L
Sbjct: 362 YSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRL 421

Query: 183 LCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL--N 239
            CK  +V++A  L+           V ++ ++ NG+       +A    KEMV RG+   
Sbjct: 422 ACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSA 481

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFF--LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
           P   T   +L    R  ++E A   +  +  K   CE++V  +T  +H     G +K A 
Sbjct: 482 PQYGTLKSLLNNLVRDDKLEMAKDVWSCISNKTSSCELNVSAWTIWIHALYAKGHVKEAC 541

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCK 324
           +    M+   ++P   TY  +++ L K
Sbjct: 542 SYCLDMMEMDLMPQPNTYAKLMKGLNK 568


>gi|6723418|emb|CAB66911.1| putative protein [Arabidopsis thaliana]
          Length = 1184

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 112/413 (27%), Positives = 197/413 (47%), Gaps = 7/413 (1%)

Query: 69  PQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHR 128
           P L+ +++ R  +       FF   +  P Y HS       + + +++R +  VW L+  
Sbjct: 97  PGLIIRVLSRCGDAGNLGYRFFLWATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEE 156

Query: 129 MKSLSLGPTQ-KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           M+  +    + + F ++  R+ SA    +AV++   M ++G       F  +LD LCK  
Sbjct: 157 MRKTNPELIEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNG 216

Query: 188 KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
            V++A  +F+  R KF  ++  +  +  GWC   +  +A EVL +M + GL P++  +  
Sbjct: 217 SVKEASKVFEDMREKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTN 276

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF-GVVGEIKRARNVFDGMVNG 306
           +L GY  AG++ +A+    +M+KR  E +V  YT ++         +  A  VF  M   
Sbjct: 277 LLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERY 336

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G    + TY A+I   CK   ++    V ++M  KG MP+  TY  ++       + E  
Sbjct: 337 GCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEEC 396

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
           LE + +MK   C P++  YN++IR  C  GE++  + L+ +M +    P +DT+ I+I+ 
Sbjct: 397 LELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMING 456

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFM--PRKFTFNRVLNGLLLIGNQGLAKEI 477
                    L+ A     EMV RG    P+  T   +LN L+      +AK++
Sbjct: 457 F---TSQGFLIEACNHFKEMVSRGIFSAPQYGTLKSLLNNLVRDDKLEMAKDV 506



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/310 (21%), Positives = 131/310 (42%), Gaps = 58/310 (18%)

Query: 89  FFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERY 148
           F N+LS    YAH           A ++ D    + L++ M+     P    + ++ +  
Sbjct: 274 FTNLLS---GYAH-----------AGKMAD---AYDLMNDMRKRGFEPNVNCYTVLIQAL 316

Query: 149 VSAGK-ADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKAD 206
               K  D A+++F+ M  +GC   + ++  ++   CK   ++K Y++    R K     
Sbjct: 317 CRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPS 376

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
            ++Y  I       ++  + LE++++M  RG +P+L  YN+V++   + G+++EA R + 
Sbjct: 377 QVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWN 436

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL--PSVATYNAMIQVLCK 324
           EM+       V T+  +++GF   G +  A N F  MV+ G+   P   T  +++  L +
Sbjct: 437 EMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSAPQYGTLKSLLNNLVR 496

Query: 325 KDSVENAILVFE-------------------------------------EMVGKGYMPNS 347
            D +E A  V+                                      +M+    MP  
Sbjct: 497 DDKLEMAKDVWSCISNKTSSCELNVSAWTIWIHALYAKGHVKEACSYCLDMMEMDLMPQP 556

Query: 348 TTYNVVIRGL 357
            TY  +++GL
Sbjct: 557 NTYAKLMKGL 566



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 92/207 (44%), Gaps = 5/207 (2%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           ++++  M+   + P+Q T+  I   +    + +  +++   M   GC   L  +N ++ L
Sbjct: 362 YSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRL 421

Query: 183 LCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL--N 239
            CK  +V++A  L+           V ++ ++ NG+       +A    KEMV RG+   
Sbjct: 422 ACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSA 481

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFF--LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
           P   T   +L    R  ++E A   +  +  K   CE++V  +T  +H     G +K A 
Sbjct: 482 PQYGTLKSLLNNLVRDDKLEMAKDVWSCISNKTSSCELNVSAWTIWIHALYAKGHVKEAC 541

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCK 324
           +    M+   ++P   TY  +++ L K
Sbjct: 542 SYCLDMMEMDLMPQPNTYAKLMKGLNK 568


>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
          Length = 426

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 179/367 (48%), Gaps = 7/367 (1%)

Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
            H   S++  I+   R   +    ++V +M      P   T + +   +    +   A+ 
Sbjct: 42  GHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAID 101

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWC 218
           +   M E G R  +  +NTI+D  CK   V  A  LF ++ R   +AD ++YN +  G C
Sbjct: 102 LVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLC 161

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
              R + A  ++++MV R + PN+ T+  V+  + + G+  EA + + EM +R  + DV 
Sbjct: 162 CSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVF 221

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TY ++++G  + G +  A+ + D MV  G LP V TYN +I   CK   V+    +F EM
Sbjct: 222 TYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREM 281

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
             +G + ++ TYN +I+G    G  + A E   RM   +  PN++TY+IL+   C    +
Sbjct: 282 AQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRM---DSRPNIRTYSILLYGLCMNWRV 338

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           E+ L LFE M       ++ TYNI+I  M      +D   A  L   +  +G  P   ++
Sbjct: 339 EKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVED---AWDLFRSLSCKGLKPDVVSY 395

Query: 459 NRVLNGL 465
             +++G 
Sbjct: 396 TTMISGF 402



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 164/333 (49%), Gaps = 7/333 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P+   F+ +  +   +   D  + +F  M   G    L S+N +++ LC+  +   A ++
Sbjct: 8   PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSV 67

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             K+ +  ++ DV++ + + NG+C   R   A++++ +M + G  P++  YN ++ G  +
Sbjct: 68  VGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCK 127

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G + +A   F  M++     D VTY ++V G    G    A  +   MV   ++P+V T
Sbjct: 128 IGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVIT 187

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           + A+I V  K+     A+ ++EEM  +   P+  TYN +I GLC  G ++ A + +  M 
Sbjct: 188 FTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMV 247

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
              C P+V TYN LI  FC +  ++ G +LF +M     + +  TYN +I   F   + D
Sbjct: 248 TKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPD 307

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467
               A ++   M  R   P   T++ +L GL +
Sbjct: 308 ---AAQEIFSRMDSR---PNIRTYSILLYGLCM 334



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 150/314 (47%), Gaps = 5/314 (1%)

Query: 172 SLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTNKALEVL 230
           S+  F+ +L  + K K  +   +LF          D+ SYN++ N  C   R   AL V+
Sbjct: 9   SIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVV 68

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
            +M+  G  P++ T + ++ G+ +  ++ +A     +M++     DVV Y TI+ G   +
Sbjct: 69  GKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKI 128

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           G +  A  +FD M   GV     TYN+++  LC      +A  +  +MV +  +PN  T+
Sbjct: 129 GLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITF 188

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
             VI      G+   A++    M     +P+V TYN LI   C  G ++   ++ + M +
Sbjct: 189 TAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVT 248

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
             CLP++ TYN LI+     K+ D+     KL  EM  RG +    T+N ++ G    G 
Sbjct: 249 KGCLPDVVTYNTLINGFCKSKRVDE---GTKLFREMAQRGLVGDTITYNTIIQGYFQAGR 305

Query: 471 QGLAKEIL-RLQSR 483
              A+EI  R+ SR
Sbjct: 306 PDAAQEIFSRMDSR 319



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 154/311 (49%), Gaps = 4/311 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           ++  ID + ++        L  RM+   +     T+  +      +G+   A ++   M 
Sbjct: 118 YNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMV 177

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTN 224
                 ++ +F  ++D+  KE K  +A  L++ + R     DV +YN + NG C+  R +
Sbjct: 178 MRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVD 237

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           +A ++L  MV +G  P++ TYN ++ G+ ++ +++E  + F EM +R    D +TY TI+
Sbjct: 238 EAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTII 297

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            G+   G    A+ +F  M +    P++ TY+ ++  LC    VE A+++FE M      
Sbjct: 298 QGYFQAGRPDAAQEIFSRMDS---RPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIE 354

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
            + TTYN+VI G+C  G +E A +    +     +P+V +Y  +I  FC   + ++   L
Sbjct: 355 LDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLL 414

Query: 405 FEKMGSGVCLP 415
           + KM     LP
Sbjct: 415 YRKMQEDGLLP 425



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 112/249 (44%), Gaps = 3/249 (1%)

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           P++  ++ VL    ++   +     F  M+      D+ +Y  +++          A +V
Sbjct: 8   PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSV 67

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
              M+  G  P V T +++I   C+ + V +AI +  +M   G+ P+   YN +I G C 
Sbjct: 68  VGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCK 127

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419
            G +  A+E   RM+ D    +  TYN L+   C +G       L   M     +PN+ T
Sbjct: 128 IGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVIT 187

Query: 420 YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           +  +I  +FV  K      A KL  EM  R   P  FT+N ++NGL + G    AK++L 
Sbjct: 188 FTAVID-VFV--KEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLD 244

Query: 480 LQSRCGRLP 488
           L    G LP
Sbjct: 245 LMVTKGCLP 253



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 3/177 (1%)

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M+    LPS+  ++ ++  + K  + +  I +F  M   G   +  +YN+VI  LC    
Sbjct: 1   MIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSR 60

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
              AL  VG+M     EP+V T + LI  FC    +   ++L  KM      P++  YN 
Sbjct: 61  FVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNT 120

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           +I         +D   A +L   M   G      T+N ++ GL   G    A  ++R
Sbjct: 121 IIDGSCKIGLVND---AVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMR 174


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 175/347 (50%), Gaps = 4/347 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           +   ID   + R      +L   M +  + P   T++ +       G    A+++F +M 
Sbjct: 197 YSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMI 256

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTN 224
                    +FNT++D LCKE  V KA+ +  V  +   K DV++YN + +G CL     
Sbjct: 257 HRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMG 316

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           K + V   MV +G  P++ +Y  ++ GY +   +++A   F EM ++    D VTY T++
Sbjct: 317 KTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLI 376

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
           HG   VG ++ A  +F  MV  G +P + TY  +   LCK   +  A+++ + + G    
Sbjct: 377 HGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLD 436

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           P+   Y++V+ G+C  GE+E A +   ++      P+V+TY I+I   C  G +    +L
Sbjct: 437 PDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKL 496

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
           F +M    C PN  TYN LI+  F+R  +++ L A +L  EM+ RGF
Sbjct: 497 FGEMDENGCSPNACTYN-LITRGFLR--NNETLRAIQLFQEMLSRGF 540



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 111/400 (27%), Positives = 190/400 (47%), Gaps = 13/400 (3%)

Query: 86  ALHFFN-ILSYHPTYAHSPSSFDHAIDLAA--RLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           AL  FN +L   P     PS  D +  L +  R++ Y TV +L  +M S  +     T  
Sbjct: 38  ALSLFNRMLRMRP----PPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLN 93

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK 202
           I+   +    +   A  +   + + G + S  +F T++  LC E K+ +A  LF    G+
Sbjct: 94  ILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGE 153

Query: 203 -FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
            F+ DV++Y  + NG C V  T+ A+  L+ M  R   P +  Y+ ++    +  Q+ EA
Sbjct: 154 GFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEA 213

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
              F +M  +    +  TY++++HG  ++G  K A  +F  M++  ++P   T+N ++  
Sbjct: 214 LSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDA 273

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           LCK+  V  A  V + M+     P+  TYN ++ G C   EM + +     M    C P+
Sbjct: 274 LCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPS 333

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
           V +Y  LI  +C    +++ + LFE+M     +P+  TYN LI  +    +  D   A  
Sbjct: 334 VISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRD---AIA 390

Query: 442 LLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481
           L  EMV  G +P   T+  + +   L  N  LA+ ++ L+
Sbjct: 391 LFHEMVVYGQIPDLVTYRILFD--YLCKNHRLAEAMVLLK 428



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 132/273 (48%), Gaps = 1/273 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           +V  M    L P   T+  + + +    +  + V +F +M   GC  S+ S+ T+++  C
Sbjct: 286 VVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYC 345

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K + ++KA  LF+    +    D ++YN + +G C V R   A+ +  EMV  G  P+L 
Sbjct: 346 KIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLV 405

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY I+     +  ++ EA      ++    + D+  Y+ ++ G    GE++ AR++F  +
Sbjct: 406 TYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKL 465

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            + G+ P V TY  MI  LC++  +  A  +F EM   G  PN+ TYN++ RG     E 
Sbjct: 466 SSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITRGFLRNNET 525

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
            RA++    M       +V T  +L+    D G
Sbjct: 526 LRAIQLFQEMLSRGFSIDVSTTTLLVEMLSDDG 558



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 112/246 (45%), Gaps = 3/246 (1%)

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
           V   + AL +   M+     P++  ++ +L    R          + +M       +  T
Sbjct: 32  VNTIDDALSLFNRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYT 91

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
              +++ F  +  +  A +V   ++  G  PS AT+  +I+ LC +  +  A+ +F++M 
Sbjct: 92  LNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMT 151

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
           G+G+ P+  TY  +I GLC  G    A+ F+  M+   C P V  Y+ +I   C   ++ 
Sbjct: 152 GEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLT 211

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
             L LF  M +    PN  TY+ LI  + +     +   A +L   M+ R  MP + TFN
Sbjct: 212 EALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKE---AIRLFYAMIHRKIMPDQLTFN 268

Query: 460 RVLNGL 465
            +++ L
Sbjct: 269 TLVDAL 274



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 131/302 (43%), Gaps = 6/302 (1%)

Query: 189 VEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           ++ A +LF ++ R +    ++ ++ +      +K  +  L + K+M   G+  N  T NI
Sbjct: 35  IDDALSLFNRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNI 94

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++  +    ++  A+    ++ K   +    T+TT++ G  V G+I  A  +FD M   G
Sbjct: 95  LINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEG 154

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
             P V TY  +I  LCK  +   AI     M  +   P    Y+ +I  LC   ++  AL
Sbjct: 155 FQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEAL 214

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
                M      PN  TY+ LI   C  G  +  + LF  M     +P+  T+N L+ ++
Sbjct: 215 SLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDAL 274

Query: 428 FVRKKSDDLLVAGKLLIE-MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGR 486
                 + ++V    +++ M+     P   T+N +++G  L    G    +     R G 
Sbjct: 275 C----KEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGC 330

Query: 487 LP 488
           +P
Sbjct: 331 VP 332


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 123/412 (29%), Positives = 192/412 (46%), Gaps = 30/412 (7%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII------AERYVSAGKAD 155
           +PS F+  +       DY   + L +RM +    P    + I        E   +A   D
Sbjct: 340 NPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIGSICGQEELPNAELLD 399

Query: 156 RAVKIFLSMHEHGCRQSLNSFNT--ILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNV 212
              K++  M    C   LN  NT      LC   K EKA+ + K + R  F  D  +Y  
Sbjct: 400 LVEKVYEEMLAASC--VLNKVNTANFSRCLCGVGKFEKAFQILKEMMRKGFVPDTSTYTK 457

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           +    C  K+  K+  + +EM   G+NP++ TY I++  + +AG IE+A  +F EM+   
Sbjct: 458 VITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVG 517

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
           C  +VVTYT ++H +    ++ +A ++F  MV+    P+  TY+A+I  LCK   ++ A 
Sbjct: 518 CSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKAC 577

Query: 333 LVFEEMVGKG----------------YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
            V+E+++G                    PN  TY  +I GLC   ++  A E +  M   
Sbjct: 578 EVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAA 637

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
            CEPN   Y+ LI  FC  G+I+   E+F +M     LP++ TY  LI  MF   K   L
Sbjct: 638 GCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMF---KDGRL 694

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            +A K+L EM++    P   T+  +++GL  +G    A  +L L    G  P
Sbjct: 695 DLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSP 746



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 163/339 (48%), Gaps = 17/339 (5%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           S++   I    + +     + L   MK   + P   T+ I+ + +  AG  ++A   F  
Sbjct: 453 STYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDE 512

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKR 222
           M   GC  ++ ++  +L    K K++ +A+++F ++       + ++Y+ + +G C    
Sbjct: 513 MRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGE 572

Query: 223 TNKALEVLKEMVDRGLN----------------PNLTTYNIVLKGYFRAGQIEEAWRFFL 266
             KA EV ++++    N                PN+ TY  ++ G  +A ++ +A     
Sbjct: 573 IQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLD 632

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
            M    CE + + Y  ++ GF  +G+I  A+ VF  M   G LPSV TY ++I  + K  
Sbjct: 633 AMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDG 692

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            ++ A+ V  EM+     PN  TY  +I GL   GE+E+AL  +  M++  C PNV TY 
Sbjct: 693 RLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYT 752

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
            LI      G+ +  L+LF++M S  C PN  TY +LI+
Sbjct: 753 ALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLIN 791



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 119/438 (27%), Positives = 199/438 (45%), Gaps = 41/438 (9%)

Query: 70  QLVDQIIK-RLWNHALKALHFFNILSYHP---TYAHSPSSFDHAIDLAARLRDYRTVWT- 124
           Q++  +++  L+N A+  LH     S  P   TY    S F         L+  +  W  
Sbjct: 276 QMISGLMEASLFNEAMSFLHRMRCNSCIPNVVTYRTLLSGF---------LKKKQFGWCK 326

Query: 125 -LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            +++ M +    P    F  +   Y +AG    A K+F  M   G      ++N  +  +
Sbjct: 327 RIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIGSI 386

Query: 184 CKEKKVEKAYNL---FKVFRGKFKADVISYNV----IANGWCLVKRTNKALEVLKEMVDR 236
           C ++++  A  L    KV+     A  +   V     +   C V +  KA ++LKEM+ +
Sbjct: 387 CGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFSRCLCGVGKFEKAFQILKEMMRK 446

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           G  P+ +TY  V+    +A ++E+++  F EMK+     DV TYT ++  F   G I++A
Sbjct: 447 GFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQA 506

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
           R+ FD M + G  P+V TY A++    K   +  A  +F  MV     PN+ TY+ +I G
Sbjct: 507 RSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDG 566

Query: 357 LCHTGEMERALEFVGRM--------------KDDEC--EPNVQTYNILIRYFCDAGEIER 400
           LC  GE+++A E   ++               +D C   PNV TY  LI   C A ++  
Sbjct: 567 LCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSD 626

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
             EL + M +  C PN   Y+ LI       K D+   A ++ + M   G++P   T+  
Sbjct: 627 AHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDN---AQEVFLRMTKCGYLPSVHTYTS 683

Query: 461 VLNGLLLIGNQGLAKEIL 478
           +++ +   G   LA ++L
Sbjct: 684 LIDRMFKDGRLDLAMKVL 701



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 144/298 (48%), Gaps = 17/298 (5%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
            M+S+   P   T+  +   Y+ + +  +A  IF  M +  C  +  +++ ++D LCK  
Sbjct: 512 EMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAG 571

Query: 188 KVEKAYNLFKVF---RGKFKAD--------------VISYNVIANGWCLVKRTNKALEVL 230
           +++KA  +++      G  ++D              V++Y  + +G C  ++ + A E+L
Sbjct: 572 EIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELL 631

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
             M+  G  PN   Y+ ++ G+ + G+I+ A   FL M K      V TYT+++      
Sbjct: 632 DAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKD 691

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           G +  A  V   M+N    P+V TY AMI  L K   +E A+ +   M  KG  PN  TY
Sbjct: 692 GRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTY 751

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
             +I GL  TG+ + +L+   +M    C PN  TY +LI + C AG ++    L ++M
Sbjct: 752 TALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEM 809



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 161/391 (41%), Gaps = 46/391 (11%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           R+K     P+  T+  + +   SAG+ +   ++   M   G     ++       LCK  
Sbjct: 194 RLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSASGFCMDRSTIGYFAQALCKVG 253

Query: 188 KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           +   A N+ +  +  F  D +    + +G       N+A+  L  M      PN+ TY  
Sbjct: 254 RWADALNMLE--KEDFNLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSCIPNVVTYRT 311

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           +L G+ +  Q     R    M    C  +   + ++VHG+   G+   A  +F+ M   G
Sbjct: 312 LLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCG 371

Query: 308 VLPSVATYNAMIQVLCKKDSVENAIL------VFEEMVG--------------------- 340
             P    YN  I  +C ++ + NA L      V+EEM+                      
Sbjct: 372 SPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFSRCLCGVG 431

Query: 341 --------------KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
                         KG++P+++TY  VI  LC   ++E++      MK     P+V TY 
Sbjct: 432 KFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYT 491

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
           ILI  FC AG IE+    F++M S  C PN+ TY  L+ +     KS  L+ A  +   M
Sbjct: 492 ILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYL---KSKQLIQAHDIFHRM 548

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
           VD    P   T++ +++GL   G    A E+
Sbjct: 549 VDAACYPNAVTYSALIDGLCKAGEIQKACEV 579



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 124/301 (41%), Gaps = 37/301 (12%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           +D  ID   ++        +  RM      P+  T+  + +R    G+ D A+K+   M 
Sbjct: 646 YDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEML 705

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTN 224
              C  ++ ++  ++D L K  ++EKA NL  +   K    +V++Y  + +G     + +
Sbjct: 706 NDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKAD 765

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
            +L++ K+M  +G  PN  TY +++     AG ++EA     EMK       +  Y   V
Sbjct: 766 ASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAV 825

Query: 285 HGF--------GVVGEIKRARNV---------FDGMVNGGVLP----------------- 310
            GF        G++ E++    V          D     G L                  
Sbjct: 826 QGFSKKFIASLGLLEEMESHETVPIAPVYGMLIDSFSKAGRLETALELHKELVEVSSSLN 885

Query: 311 --SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
             S   Y ++IQ LC    VE A  ++ EM  KG +P+   +  +++GL    + + AL+
Sbjct: 886 MTSTGMYASLIQALCLASQVEEAFTLYTEMTRKGIVPDLIVFVSLVKGLIEVNKWDEALQ 945

Query: 369 F 369
            
Sbjct: 946 L 946



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 116/294 (39%), Gaps = 43/294 (14%)

Query: 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM-- 268
           NV+    C     ++ALE L  + D G  P+  TYN +++    AGQ+E  +R   EM  
Sbjct: 173 NVLVRRCCRHGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSA 232

Query: 269 ------------------------------KKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
                                         +K    +D V  T ++ G         A +
Sbjct: 233 SGFCMDRSTIGYFAQALCKVGRWADALNMLEKEDFNLDTVLCTQMISGLMEASLFNEAMS 292

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
               M     +P+V TY  ++    KK        +   M+ +G  PN + +N ++ G C
Sbjct: 293 FLHRMRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYC 352

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG--LEL----FEKMGSGV 412
           + G+   A +   RM      P    YNI I   C   E+     L+L    +E+M +  
Sbjct: 353 NAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAAS 412

Query: 413 CLPN-LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           C+ N ++T N       V K       A ++L EM+ +GF+P   T+ +V+  L
Sbjct: 413 CVLNKVNTANFSRCLCGVGKFEK----AFQILKEMMRKGFVPDTSTYTKVITFL 462



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/283 (18%), Positives = 131/283 (46%), Gaps = 13/283 (4%)

Query: 56  LTQTLHCPSLHWTPQLVDQIIK--RLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLA 113
           +T+  + PS+H    L+D++ K  RL + A+K L      S +P       ++   ID  
Sbjct: 669 MTKCGYLPSVHTYTSLIDRMFKDGRL-DLAMKVLSEMLNDSCNPNVV----TYTAMIDGL 723

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
           +++ +      L+  M+     P   T+  + +     GKAD ++K+F  M+  GC  + 
Sbjct: 724 SKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNY 783

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
            ++  +++  C    +++A+ L    +   +   +  Y+    G+   K+   +L +L+E
Sbjct: 784 VTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGF--SKKFIASLGLLEE 841

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT---YTTIVHGFGV 289
           M      P    Y +++  + +AG++E A     E+ +    +++ +   Y +++    +
Sbjct: 842 MESHETVPIAPVYGMLIDSFSKAGRLETALELHKELVEVSSSLNMTSTGMYASLIQALCL 901

Query: 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
             +++ A  ++  M   G++P +  + ++++ L + +  + A+
Sbjct: 902 ASQVEEAFTLYTEMTRKGIVPDLIVFVSLVKGLIEVNKWDEAL 944



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
           A Y+A+ ++L  +D    A  +  E+            NV++R  C  G  + ALE +GR
Sbjct: 135 ACYDALAEILGFEDPARTAERLLREIGEDDREVLRRLLNVLVRRCCRHGLWDEALEELGR 194

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGVCL 414
           +KD    P+  TYN L++    AG++E G  + ++M  SG C+
Sbjct: 195 LKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSASGFCM 237


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 102/365 (27%), Positives = 183/365 (50%), Gaps = 4/365 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           LV RM      P   T+  I      +G    A+ +   M E   +  + +++TI+D LC
Sbjct: 170 LVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLC 229

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           ++  ++ A +LFK    K  K+ V++YN +  G C   + N    +LK+MV R + PN+ 
Sbjct: 230 RDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVI 289

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           T+N++L  + + G+++EA   + EM  R    +++TY T++ G+ +   +  A N+ D M
Sbjct: 290 TFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLM 349

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           V     P + T+ ++I+  C    V++ + VF  +  +G + N+ TY+++++G C +G++
Sbjct: 350 VRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKI 409

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A E    M      P+V TY IL+   CD G++E+ LE+FE +        +  Y  +
Sbjct: 410 KLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTI 469

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I  M    K +D   A  L   +  +G  P   T+  +++GL   G+   A  +LR    
Sbjct: 470 IEGMCKGGKVED---AWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEE 526

Query: 484 CGRLP 488
            G  P
Sbjct: 527 DGNAP 531



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 188/398 (47%), Gaps = 39/398 (9%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ++   R  D      L+ +M+  ++     T++ I +     G  D A+ +F  M
Sbjct: 185 TYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM 244

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRT 223
              G + S+ ++N+++  LCK  K      L K +   +   +VI++NV+ + +    + 
Sbjct: 245 ETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKL 304

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A E+ KEM+ RG++PN+ TYN ++ GY    ++ EA      M + KC  D+VT+T++
Sbjct: 305 QEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSL 364

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G+ +V  +     VF  +   G++ +  TY+ ++Q  C+   ++ A  +F+EMV  G 
Sbjct: 365 IKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGV 424

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFV-------------------------GRMKD--- 375
           +P+  TY +++ GLC  G++E+ALE                           G+++D   
Sbjct: 425 LPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWN 484

Query: 376 -------DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
                     +PNV TY ++I   C  G +     L  KM      PN  TYN LI +  
Sbjct: 485 LFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHL 544

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
              +  DL  + KL+ EM   GF     +   V++ LL
Sbjct: 545 ---RDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLL 579



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 105/373 (28%), Positives = 175/373 (46%), Gaps = 41/373 (10%)

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNV 212
           K D A+ +F  M       SL  F+     + + K+    +NL   F  + + + I++N+
Sbjct: 58  KKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQ----FNLVLDFCKQLELNGIAHNI 113

Query: 213 -----IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
                + N +C   +T  A  VL +++  G  P+ TT+N ++KG F  G++ EA      
Sbjct: 114 YTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDR 173

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M +  C+ DVVTY +IV+G    G+   A ++   M    V   V TY+ +I  LC+   
Sbjct: 174 MVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGC 233

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
           ++ AI +F+EM  KG   +  TYN ++RGLC  G+       +  M   E  PNV T+N+
Sbjct: 234 IDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNV 293

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS---------------SMFVRKK 432
           L+  F   G+++   EL+++M +    PN+ TYN L+                 + VR K
Sbjct: 294 LLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 353

Query: 433 -SDDL-----LVAGKLLIEMVD-----------RGFMPRKFTFNRVLNGLLLIGNQGLAK 475
            S D+     L+ G  +++ VD           RG +    T++ ++ G    G   LA+
Sbjct: 354 CSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAE 413

Query: 476 EILRLQSRCGRLP 488
           E+ +     G LP
Sbjct: 414 ELFQEMVSHGVLP 426


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 116/408 (28%), Positives = 195/408 (47%), Gaps = 54/408 (13%)

Query: 103 PSSFDHAIDL-----AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV----SAGK 153
           P+S  H I L     A R+RD       +  M+  S      T+ ++ +       SA +
Sbjct: 100 PTSASHNILLRGFFMAGRVRD---ALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANR 156

Query: 154 ADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVI 213
            ++A++ F  M   G    L S++ +L  L    ++ +A+ LF         D+++YNV+
Sbjct: 157 LEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAM--TCSPDIMTYNVL 214

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
            +G+C + +T +A  ++KE++  G  PN+ TY+I++  Y +  ++EEAW  F++M +  C
Sbjct: 215 MDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNC 274

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK-DSVENAI 332
             + VT+ T++ GF   G ++ A  +F  M   G   ++ TYN +I  LCKK   V  A+
Sbjct: 275 VPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAV 334

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI----- 387
            +F ++ G G  P   TYN +I+G C    +  A+++   M + +C PNV TY+I     
Sbjct: 335 DLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEM-EGKCAPNVITYSILIDGL 393

Query: 388 ------------------------------LIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
                                         LI  FC  GE++  L  FEKM    C PN 
Sbjct: 394 CKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNT 453

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
             +N LI  +   ++++D L   +LL  M   G  P   T+N +++GL
Sbjct: 454 VIFNTLIDGLCKAERANDGL---RLLCHMHAEGCKPDVITYNCLISGL 498



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 97/303 (32%), Positives = 160/303 (52%), Gaps = 8/303 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T++II   Y    K + A ++F+ M E  C  +  +FNT++   CK   +E A  L
Sbjct: 241 PNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKL 300

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTN--KALEVLKEMVDRGLNPNLTTYNIVLKGY 252
           F ++ +   KA +++YN + +  C  KR     A+++  ++   GL P + TYN +++G+
Sbjct: 301 FAEMEKIGCKATIVTYNTLIDSLC-KKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGF 359

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
             A ++ EA ++F EM+  KC  +V+TY+ ++ G   V  +K A    + M   G  P+V
Sbjct: 360 CDARRLSEAMQYFDEMEG-KCAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTV 418

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            TY  +I   CK   +++A+L FE+M   G  PN+  +N +I GLC        L  +  
Sbjct: 419 VTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCH 478

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           M  + C+P+V TYN LI   C A  +E    LF+ M    C PN+ T+N LI  +  +KK
Sbjct: 479 MHAEGCKPDVITYNCLISGLCSANRVEDAQRLFDGM---ACAPNVTTFNFLIRGLCAQKK 535

Query: 433 SDD 435
            ++
Sbjct: 536 VEE 538



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 156/311 (50%), Gaps = 8/311 (2%)

Query: 100 AHSPSSFDHAI--DLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRA 157
            + P+ F ++I  +   +L      W +  +M   +  P   TF  +   +  AG  + A
Sbjct: 238 GYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDA 297

Query: 158 VKIFLSMHEHGCRQSLNSFNTILDLLCKEK-KVEKAYNLFKVFRGK-FKADVISYNVIAN 215
           +K+F  M + GC+ ++ ++NT++D LCK++  V  A +LF    G      +++YN +  
Sbjct: 298 IKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQ 357

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
           G+C  +R ++A++   EM  +   PN+ TY+I++ G  +  +++EA +   +MK      
Sbjct: 358 GFCDARRLSEAMQYFDEMEGK-CAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTP 416

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
            VVTY  +++GF   GE+K A   F+ M   G  P+   +N +I  LCK +   + + + 
Sbjct: 417 TVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLL 476

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
             M  +G  P+  TYN +I GLC    +E A      M    C PNV T+N LIR  C  
Sbjct: 477 CHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFDGMA---CAPNVTTFNFLIRGLCAQ 533

Query: 396 GEIERGLELFE 406
            ++E    + +
Sbjct: 534 KKVEEARNILD 544



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 108/413 (26%), Positives = 181/413 (43%), Gaps = 85/413 (20%)

Query: 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
             P   T+ ++   +   G+  +AV +F  M   G   + ++ NT+L  LC+  ++  A 
Sbjct: 28  FAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSAL 87

Query: 194 NLFK----------------VFRGKFKADVI--------------------SYNVIANGW 217
            LF+                + RG F A  +                    +YN++  G 
Sbjct: 88  KLFREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSSSVATGTYNLVLKGL 147

Query: 218 CL----VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
           C       R  +A+E  KEM   G+ P+L +Y+I+L     +G++ EA   F  M    C
Sbjct: 148 CWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAM---TC 204

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
             D++TY  ++ G+  +G+   A+++   ++  G  P+V TY+ +I   CK D VE A  
Sbjct: 205 SPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWE 264

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE-------------- 379
           VF +M+    +PN+ T+N +I G C  G +E A++    M+   C+              
Sbjct: 265 VFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLC 324

Query: 380 ----------------------PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
                                 P + TYN LI+ FCDA  +   ++ F++M  G C PN+
Sbjct: 325 KKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEM-EGKCAPNV 383

Query: 418 DTYNILISSMF-VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
            TY+ILI  +  VR+  +    A K L +M   G+ P   T+  ++NG    G
Sbjct: 384 ITYSILIDGLCKVRRMKE----AAKTLEDMKAHGYTPTVVTYGGLINGFCKCG 432



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 144/298 (48%), Gaps = 11/298 (3%)

Query: 177 NTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235
           N +L  L   +K ++A  LFK V  G F  +  +YNV+  G+C   + ++A+ V  +M  
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKS 60

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
            GL PN +T N +L G    GQ+  A + F EM+         ++  ++ GF + G ++ 
Sbjct: 61  SGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRD 120

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLC----KKDSVENAILVFEEMVGKGYMPNSTTYN 351
           A      M       +  TYN +++ LC      + +E A+  F+EM   G  P+  +Y+
Sbjct: 121 ALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYH 180

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
           +++  L  +G M  A      M    C P++ TYN+L+  +C  G+      L +++   
Sbjct: 181 ILLSALSDSGRMAEAHALFSAMT---CSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKA 237

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
              PN+ TY+I+I+      K D +  A ++ ++M++   +P   TFN ++ G    G
Sbjct: 238 GYEPNVFTYSIIINCYC---KLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAG 292


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 159/298 (53%), Gaps = 1/298 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+  I + +   GK   AV +   M + G R  +  +NTI+D LCK++ V +A ++
Sbjct: 187 PNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDI 246

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F   +GK  + DV +Y+++ +G C   +  +A  +  EM+   + P++ T+NI++    +
Sbjct: 247 FSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCK 306

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G + EA      M ++  E +  TY ++++G+ +  ++  AR VFD M+  G +P+V +
Sbjct: 307 EGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVS 366

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN +I   CK   ++ A  +F+EM  +G +PN+  YN +I GLC  G    A E    M+
Sbjct: 367 YNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQ 426

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
              C P++ T  IL+   C  G ++  L LF  M      PNL TY+ILI +M+   K
Sbjct: 427 AQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCLKPNLVTYDILIRAMYKSGK 484



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 161/305 (52%), Gaps = 4/305 (1%)

Query: 176 FNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           FN +++   + ++V+ A+++  K+ +  F+ D ++++ + NG C   +  +A+E   EMV
Sbjct: 122 FNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMV 181

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
             G  PNL TYN ++KG+ + G+   A     +M K     D+V Y TI+ G      + 
Sbjct: 182 ASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVS 241

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
            A ++F  +   GV P V TY+ ++  LC  D  E A  +F EM+    MP+  T+N+++
Sbjct: 242 EALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILV 301

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
             LC  G +  A   +  M +   EPN  TYN L+  +C   ++     +F+ M +  C+
Sbjct: 302 DKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCM 361

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           PN+ +YNILI+     ++ D+   A +L  EM  RG +P  F +N +++GL   G    A
Sbjct: 362 PNVVSYNILINGYCKAQRIDE---ARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEA 418

Query: 475 KEILR 479
           +E+ +
Sbjct: 419 RELFK 423



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 131/261 (50%), Gaps = 3/261 (1%)

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           ++ ++ + +    +K     L + K +    +  ++  +NI++  + R  +++ A+    
Sbjct: 84  IVEFDKLLSALVRIKHYGTVLSLSKRIELLRIERDVFHFNILINCFSRLQRVDFAFSVLG 143

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           ++ K   E D VT++++++G     +  RA   FD MV  G  P++ TYN +I+  CK  
Sbjct: 144 KIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCKIG 203

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
               A+ + ++M   G  P+   YN +I GLC    +  AL+    +K     P+V TY+
Sbjct: 204 KTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYS 263

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
           IL+   C++ + E    LF +M S   +P++ T+NIL+  +    K   L  A  ++  M
Sbjct: 264 ILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLC---KEGMLSEAQGIIKIM 320

Query: 447 VDRGFMPRKFTFNRVLNGLLL 467
           +++G  P   T+N ++NG  L
Sbjct: 321 IEKGVEPNYATYNSLMNGYCL 341



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 70/166 (42%), Gaps = 3/166 (1%)

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
           C   ++E+A+  F  M+ K  +P    ++ ++  L         L    R++    E +V
Sbjct: 60  CSLTNIEDALFSFNHMIHKHPLPCIVEFDKLLSALVRIKHYGTVLSLSKRIELLRIERDV 119

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
             +NILI  F     ++    +  K+      P+  T++ LI+ +      D    A + 
Sbjct: 120 FHFNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFE---DKFARAMEF 176

Query: 443 LIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             EMV  G+ P   T+N ++ G   IG   +A  +L+   + G  P
Sbjct: 177 FDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRP 222


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 107/343 (31%), Positives = 182/343 (53%), Gaps = 6/343 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M   S+ P   ++  +      A K   AV + L M   GC  +  +  T++D LC
Sbjct: 20  LIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLC 79

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K+ ++++A  L +  + K F ADV+ Y  + +G+C     ++  E+  EM+ +G++ N+ 
Sbjct: 80  KDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVV 139

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY+ ++ G  R GQ +EA      M +     DVVTYT ++ G    G    A ++ + M
Sbjct: 140 TYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLM 199

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           V  G  PS  TYN ++  LCK+  V +A  +   M+ KG   +  TYN +++GLC  G++
Sbjct: 200 VEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKV 259

Query: 364 ERALEFVGRMKDDE-C-EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
           + AL+    M D+E C EPNV T+N+LI   C  G + + +++  KM       NL TYN
Sbjct: 260 DEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYN 319

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           +L+       K+  +  A +L  +++D GF+P  FT++ +++G
Sbjct: 320 MLLGGCL---KAGKIKEAMELWKQVLDLGFVPNSFTYSILIDG 359



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 177/353 (50%), Gaps = 8/353 (2%)

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-- 200
           I+ +     G    A+ +   M        + S+NT+++ LCK KK+++A  L       
Sbjct: 3   IVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAA 62

Query: 201 GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
           G F  + ++   + +G C   R ++A+E+L+ M  +G + ++  Y  ++ G+   G ++ 
Sbjct: 63  GCF-PNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDR 121

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
               F EM  +    +VVTY+ +VHG   +G+ K A  V + M   G+ P V TY  +I 
Sbjct: 122 GKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLID 181

Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
            LCK     +A+ +   MV KG  P++ TYNV++ GLC  G +  A + +  M +   + 
Sbjct: 182 GLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKA 241

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKM-GSGVCL-PNLDTYNILISSMFVRKKSDDLLV 438
           +V TYN L++  CD G+++  L+LF  M  +  CL PN+ T+N+LI  +    K   L  
Sbjct: 242 DVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLC---KEGRLTK 298

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           A K+  +MV +G      T+N +L G L  G    A E+ +     G +P  F
Sbjct: 299 AVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSF 351



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 176/353 (49%), Gaps = 8/353 (2%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-- 197
           T++ +       G+   A  +  +M EHG    + ++  ++D LCK+ +   A +L    
Sbjct: 140 TYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLM 199

Query: 198 VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
           V +G+  ++V +YNV+ +G C       A ++L+ M+++G   ++ TYN ++KG    G+
Sbjct: 200 VEKGEEPSNV-TYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGK 258

Query: 258 IEEAWRFFLEM-KKRKC-EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
           ++EA + F  M     C E +V T+  ++ G    G + +A  +   MV  G   ++ TY
Sbjct: 259 VDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTY 318

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           N ++    K   ++ A+ ++++++  G++PNS TY+++I G C    +  A      M+ 
Sbjct: 319 NMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRT 378

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
               P +  YN L+   C  G +E+   LF++MG+  C P++ ++N +I       K+ D
Sbjct: 379 HGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTL---KAGD 435

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
                +L ++MV+ G  P   TF+ ++N L  +G    AK  L      G  P
Sbjct: 436 FQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTP 488



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 105/371 (28%), Positives = 185/371 (49%), Gaps = 11/371 (2%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            RL  ++   T+++ M    + P   T+  + +     G+A  A+ +   M E G   S 
Sbjct: 149 CRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSN 208

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKRTNKALEVLK 231
            ++N +L  LCKE  V  A+ + ++   +GK KADV++YN +  G C   + ++AL++  
Sbjct: 209 VTYNVLLSGLCKEGLVIDAFKILRMMIEKGK-KADVVTYNTLMKGLCDKGKVDEALKLFN 267

Query: 232 EMVDRG--LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289
            M D    L PN+ T+N+++ G  + G++ +A +   +M K+    ++VTY  ++ G   
Sbjct: 268 SMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLK 327

Query: 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
            G+IK A  ++  +++ G +P+  TY+ +I   CK   +  A  +F EM   G  P    
Sbjct: 328 AGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFD 387

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
           YN ++  LC  G +E+A      M +  CEP++ ++N +I     AG+ +   EL  KM 
Sbjct: 388 YNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMV 447

Query: 410 SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
                P+  T++ LI+ +    K  +L  A   L  MV  GF P    ++ +L GL    
Sbjct: 448 EMGLRPDALTFSTLINRL---SKLGELDEAKSALERMVASGFTPDALVYDSLLKGL---S 501

Query: 470 NQGLAKEILRL 480
           ++G   EI+ L
Sbjct: 502 SKGDTTEIINL 512



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 134/270 (49%), Gaps = 6/270 (2%)

Query: 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
           N++  G C      +A+ +++EM  + ++P++ +YN ++ G  +A +++EA    LEM+ 
Sbjct: 2   NIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEA 61

Query: 271 RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
             C  + VT TT++ G    G +  A  + + M   G    V  Y  +I   C   +++ 
Sbjct: 62  AGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDR 121

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
              +F+EM+GKG   N  TY+ ++ GLC  G+ + A   +  M +    P+V TY  LI 
Sbjct: 122 GKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLID 181

Query: 391 YFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450
             C  G     ++L   M      P+  TYN+L+S +    K   ++ A K+L  M+++G
Sbjct: 182 GLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLC---KEGLVIDAFKILRMMIEKG 238

Query: 451 FMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
                 T+N ++ GL    ++G   E L+L
Sbjct: 239 KKADVVTYNTLMKGLC---DKGKVDEALKL 265



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 121/241 (50%), Gaps = 1/241 (0%)

Query: 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
           L P   TF ++       G+  +AVKI   M + G   +L ++N +L    K  K+++A 
Sbjct: 276 LEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAM 335

Query: 194 NLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
            L+K V    F  +  +Y+++ +G+C ++  N A  +  EM   GLNP L  YN ++   
Sbjct: 336 ELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASL 395

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
            + G +E+A   F EM    CE D++++ T++ G    G+ +  + +   MV  G+ P  
Sbjct: 396 CKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDA 455

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            T++ +I  L K   ++ A    E MV  G+ P++  Y+ +++GL   G+    +  + +
Sbjct: 456 LTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQ 515

Query: 373 M 373
           M
Sbjct: 516 M 516



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 159/335 (47%), Gaps = 13/335 (3%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRD------YRTVWTLVHRMKSLSLGPTQ 138
           +A H  ++L+        PS+  + + L+   ++      ++ +  ++ + K   +    
Sbjct: 188 RATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADV---- 243

Query: 139 KTFAIIAERYVSAGKADRAVKIFLSM--HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF 196
            T+  + +     GK D A+K+F SM  +E+    ++ +FN ++  LCKE ++ KA  + 
Sbjct: 244 VTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIH 303

Query: 197 -KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
            K+ +     ++++YN++  G     +  +A+E+ K+++D G  PN  TY+I++ G+ + 
Sbjct: 304 RKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKM 363

Query: 256 GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
             +  A   F EM+       +  Y T++      G +++A+++F  M N    P + ++
Sbjct: 364 RMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISF 423

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           N MI    K    +    +  +MV  G  P++ T++ +I  L   GE++ A   + RM  
Sbjct: 424 NTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVA 483

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
               P+   Y+ L++     G+    + L  +M +
Sbjct: 484 SGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAA 518


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 106/368 (28%), Positives = 181/368 (49%), Gaps = 4/368 (1%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
           +W +   M    + P   T++ + E Y    + D A K+ + M E GC  +  ++N ++ 
Sbjct: 101 LWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIA 160

Query: 182 LLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
            LC+   VE+A+   K         D  +Y  + NG C  +R+N+A  +L EM    L P
Sbjct: 161 GLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKP 220

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           N+  Y  ++ G+ R G  +EA++   EM     + + +TY  +V G   +G++ RA  + 
Sbjct: 221 NVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLL 280

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
             MV     P   TYN +I+   +  + ++A  +  EM   G  PN  TY+++I GLC +
Sbjct: 281 KQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQS 340

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
           GE E+A + +  M     +PN   Y  LI  +C  G +    E+F+KM     LP+L  Y
Sbjct: 341 GEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCY 400

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           N LI   F   K   +  + K   +M +RG +P +FT++ +++G L  G+   A+++++ 
Sbjct: 401 NSLI---FGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQR 457

Query: 481 QSRCGRLP 488
               G  P
Sbjct: 458 MLDTGLKP 465



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 177/367 (48%), Gaps = 4/367 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++D+ +    ++        L+ +M   S  P   T+ +I E +        A ++   M
Sbjct: 259 TYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEM 318

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
              G   ++ +++ ++  LC+  + EKA +L +    K  K +   Y  + +G+C     
Sbjct: 319 ENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNV 378

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A E+  +M    + P+L  YN ++ G  + G++EE+ ++F +M++R    +  TY+ +
Sbjct: 379 SLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGL 438

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +HG+   G+++ A  +   M++ G+ P+   Y  +++   K D +E     F+ M+ +G 
Sbjct: 439 IHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGV 498

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
           M ++  Y ++I  L  +G ME A   +  ++ +   P+V  Y+ LI   C   + E+   
Sbjct: 499 MLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFG 558

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           + ++M      PN+  YN LI  +    KS D+  A  +   ++ +G +P   T+  +++
Sbjct: 559 ILDEMSKKGVDPNIVCYNALIDGLC---KSGDISYARNVFNSILAKGLVPNCVTYTSLID 615

Query: 464 GLLLIGN 470
           G   +G+
Sbjct: 616 GSCKVGD 622



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 119/532 (22%), Positives = 228/532 (42%), Gaps = 58/532 (10%)

Query: 1   MFALLRKPPKNHLHFFCIYRGLSPLTTTSPAPLP------PAAADPAALASLILTSTDPR 54
           +  ++R  P   +    I+R LS     SPA L         +      A ++L   D R
Sbjct: 18  LIKMIRAYPSPPVVLASIHRALSDSGHRSPAVLDVLVDTYKKSGRVQDAAEVVLMMRD-R 76

Query: 55  TLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHA--IDL 112
            L  ++ C          + ++K L      AL  + +  +      SP  + ++  I+ 
Sbjct: 77  GLAPSIRC---------CNALLKDLLRADAMAL-LWKVREFMVGAGISPDVYTYSTLIEA 126

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
             ++R++ T   ++  M+    G    T+ ++      +G  + A      M ++G    
Sbjct: 127 YCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPD 186

Query: 173 LNSFNTILDLLCKEKKVEKAYNL--------------------------------FKVFR 200
             ++  +++ LCK ++  +A  L                                FK+ +
Sbjct: 187 GFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIK 246

Query: 201 GKFKADV----ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256
               A V    I+Y+ +  G C + + ++A  +LK+MV     P+  TYN++++G+FR  
Sbjct: 247 EMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHH 306

Query: 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
             ++A+R   EM+      +V TY+ ++HG    GE ++A ++ + M   G+ P+   Y 
Sbjct: 307 NKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYA 366

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
            +I   C++ +V  A  +F++M     +P+   YN +I GL   G +E + ++  +M++ 
Sbjct: 367 PLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQER 426

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
              PN  TY+ LI  +   G++E   +L ++M      PN   Y  L+ S F   KSDD+
Sbjct: 427 GLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYF---KSDDI 483

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
                    M+D+G M     +  +++ L   GN   A  +L    + G +P
Sbjct: 484 EKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVP 535



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 162/370 (43%), Gaps = 37/370 (10%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
           V   +HR  S S   +     ++ + Y  +G+   A ++ L M + G   S+   N +L 
Sbjct: 31  VLASIHRALSDSGHRSPAVLDVLVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALL- 89

Query: 182 LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
                                   D++  + +A  W          +V + MV  G++P+
Sbjct: 90  -----------------------KDLLRADAMALLW----------KVREFMVGAGISPD 116

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           + TY+ +++ Y +  + + A +  +EM++R C ++ VTY  ++ G    G ++ A     
Sbjct: 117 VYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKK 176

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M + G++P   TY A+I  LCK      A  + +EM      PN   Y  +I G    G
Sbjct: 177 DMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREG 236

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
             + A + +  M     +PN  TY+ L+R  C  G+++R   L ++M      P+  TYN
Sbjct: 237 NADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYN 296

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481
           ++I   F      D   A +LL EM + G  P  +T++ +++GL   G    A ++L   
Sbjct: 297 LIIEGHFRHHNKKD---AFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEM 353

Query: 482 SRCGRLPRQF 491
           +  G  P  F
Sbjct: 354 TTKGLKPNAF 363



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 174/394 (44%), Gaps = 10/394 (2%)

Query: 90  FNILSYHPTYAHSPSSFDHAIDLAARLR--DYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
           F +LS       SP+ + ++I +    +  +      L+  M +  L P    +A +   
Sbjct: 312 FRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISG 371

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKAD 206
           Y   G    A +IF  M +      L  +N+++  L K  +VE++   F   + +    +
Sbjct: 372 YCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPN 431

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
             +Y+ + +G+        A ++++ M+D GL PN   Y  +L+ YF++  IE+    F 
Sbjct: 432 EFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFK 491

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
            M  +   +D   Y  ++H     G ++ A  V   +   G +P V  Y+++I  LCK  
Sbjct: 492 SMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTA 551

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
             E A  + +EM  KG  PN   YN +I GLC +G++  A      +      PN  TY 
Sbjct: 552 DREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYT 611

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            LI   C  G+I     L+ +M +    P+   Y++L +       + DL  A  L+ EM
Sbjct: 612 SLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGC---SSAGDLEQAMFLIEEM 668

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
             RG      +FN +++G      +G  +E L+L
Sbjct: 669 FLRGHASIS-SFNNLVDGFC---KRGKMQETLKL 698



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/403 (20%), Positives = 163/403 (40%), Gaps = 58/403 (14%)

Query: 103 PSSFDHAIDLAARLR--DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P+ F ++  +   L+  D  +   LV RM    L P    +  + E Y  +   ++    
Sbjct: 430 PNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSST 489

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCL 219
           F SM + G       +  ++  L     +E A+  L ++ +     DV  Y+ + +G C 
Sbjct: 490 FKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCK 549

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
                KA  +L EM  +G++PN+  YN ++ G  ++G I  A   F  +  +    + VT
Sbjct: 550 TADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVT 609

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLP----------------------------- 310
           YT+++ G   VG+I  A  +++ M+  G+ P                             
Sbjct: 610 YTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMF 669

Query: 311 -----SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
                S++++N ++   CK+  ++  + +   ++G+G +PN+ T   +I GL   G++  
Sbjct: 670 LRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSE 729

Query: 366 ALEFVGRMKDDECEPNVQTYNIL------------------IRYFCDAGEIERGLELFEK 407
                  ++    E   + ++ L                  IR  C  G +++ L L + 
Sbjct: 730 VHTIFVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDV 789

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450
           + +        +Y  ++ ++  + K  + L    LL EM  RG
Sbjct: 790 IVAKSAPMGCSSYLAIVDNLCRKGKLSEAL---NLLKEMDKRG 829



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 24/172 (13%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           S SSF++ +D   +    +    L+H +    L P   T   I      AGK      IF
Sbjct: 675 SISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIF 734

Query: 162 LSMHEHGCRQSLNSFNTI-LDLL-----------------CKEKKVEKAYNLFKVFRGKF 203
           + + +     +   F+++ +D++                 CKE  ++KA  L  V   K 
Sbjct: 735 VELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKS 794

Query: 204 KA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRG-LNPNLTTYNIVLKGYF 253
                 SY  I +  C   + ++AL +LKEM  RG L P L    + L G F
Sbjct: 795 APMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRGNLQPTL----VALLGIF 842


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 104/397 (26%), Positives = 195/397 (49%), Gaps = 8/397 (2%)

Query: 93  LSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAG 152
           L Y P      ++F+  I+             LV RM      P   T+  I      +G
Sbjct: 129 LGYEP----DTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSG 184

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYN 211
               A+ +   M E   +  + +++TI+D LC++  ++ A +LFK    K  K+ +++YN
Sbjct: 185 DTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYN 244

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
            +  G C   + N  +++LK+M  R + PN+ T+N+++  + + G+++EA   + EM  +
Sbjct: 245 SLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITK 304

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
               + +TY +++ G+ +   +  A N+ D MV     P + T+ ++I+  CK   V+  
Sbjct: 305 GISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEG 364

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
           + +F ++  +G + N+ TY+++++G C +G++E A E    M      P+V TY IL+  
Sbjct: 365 MKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDG 424

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
            CD G++E+ LE+FE +       ++  Y I+I  M    K +D   A  L   +  +G 
Sbjct: 425 LCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVED---AWNLFCSLPCKGV 481

Query: 452 MPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            P   T+  +++GL   G+   A  +LR     G  P
Sbjct: 482 KPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEP 518



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 181/367 (49%), Gaps = 4/367 (1%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
           A  + +  V     +M+   +     T  I+   +    K   A  +   + + G     
Sbjct: 76  ASTKQFNLVLDFCKKMELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDT 135

Query: 174 NSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
            +FNT+++ LC E KV +A  L  ++     + +V++YN I NG C    T+ AL++L++
Sbjct: 136 TTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRK 195

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M +R +  ++ TY+ ++    R G I+ A   F EM+ +  +  +VTY ++V G    G+
Sbjct: 196 MDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGK 255

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
                 +   M +  ++P+V T+N +I V  K+  ++ A  +++EM+ KG  PN+ TYN 
Sbjct: 256 WNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNS 315

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           ++ G C    +  A   +  M  + C P++ T+  LI+ +C    ++ G++LF K+    
Sbjct: 316 LMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRG 375

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
            + N  TY+IL+       +S  L +A +L  EMV  G +P   T+  +L+GL   G   
Sbjct: 376 LVANTVTYSILVQGFC---QSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLE 432

Query: 473 LAKEILR 479
            A EI  
Sbjct: 433 KALEIFE 439



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 176/362 (48%), Gaps = 4/362 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   ID   R        +L   M++  +  +  T+  +      AGK +  V++   M
Sbjct: 207 TYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDM 266

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
                  ++ +FN ++D+  KE K+++A  L+K    K    + I+YN + +G+C+  R 
Sbjct: 267 TSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRL 326

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           ++A  +L  MV    +P++ T+  ++KGY +  +++E  + F ++ KR    + VTY+ +
Sbjct: 327 SEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSIL 386

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           V GF   G+++ A  +F  MV+ GVLP V TY  ++  LC    +E A+ +FE++     
Sbjct: 387 VQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKM 446

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
             +   Y ++I G+C  G++E A      +     +PNV TY ++I   C  G +     
Sbjct: 447 NLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANI 506

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           L  KM      PN  TYN LI +     +  DL  + KL+ EM   GF     +   V++
Sbjct: 507 LLRKMEEDGNEPNDCTYNTLIRAHL---RDGDLTASAKLIEEMKSCGFSADASSIKMVID 563

Query: 464 GL 465
            L
Sbjct: 564 ML 565



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 147/297 (49%), Gaps = 4/297 (1%)

Query: 188 KVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
           K + A +LF+ + R +    ++ ++   +G    K+ N  L+  K+M   G+  N+ T N
Sbjct: 45  KEDDAIDLFQEMIRSRPLPSLVDFSRFFSGVASTKQFNLVLDFCKKMELNGIAHNIYTLN 104

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
           I++  + R  +   A+    ++ K   E D  T+ T+++G  +  ++  A  +   MV  
Sbjct: 105 IMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVEN 164

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G  P+V TYN+++  +CK      A+ +  +M  +    +  TY+ +I  LC  G ++ A
Sbjct: 165 GCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAA 224

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
           +     M+    + ++ TYN L+   C AG+   G++L + M S   +PN+ T+N+LI  
Sbjct: 225 ISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLI-D 283

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           +FV  K   L  A +L  EM+ +G  P   T+N +++G  +      A  +L L  R
Sbjct: 284 VFV--KEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVR 338


>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
          Length = 1048

 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 110/392 (28%), Positives = 192/392 (48%), Gaps = 4/392 (1%)

Query: 100  AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
            +H   SF   I    R         L+ +M  L   P+  T   +   +    +   AV 
Sbjct: 636  SHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVS 695

Query: 160  IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWC 218
            +  SM   G   ++  +NT+++ LCK + +  A  +F     K  +AD ++YN + +G  
Sbjct: 696  LVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLS 755

Query: 219  LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
               R   A  +L++MV R ++PN+  +  ++  + + G + EA   + EM +R    +V 
Sbjct: 756  NSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVF 815

Query: 279  TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
            TY ++++GF + G +  A+ +FD MV+ G  P V TYN +I   CK   VE+ + +F EM
Sbjct: 816  TYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEM 875

Query: 339  VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
              +G + ++ TYN +I G C  G++  A +   RM D    P++ TYNIL+   C+ G+I
Sbjct: 876  TYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKI 935

Query: 399  ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
            E+ L + E +       ++ TYNI+I  +    ++D L  A  L   +  +G  P    +
Sbjct: 936  EKALVMVEDLQKSEMDVDIITYNIIIQGLC---RTDKLKEAWCLFRSLTRKGVKPDAIAY 992

Query: 459  NRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
              +++GL   G Q  A ++ R     G +P +
Sbjct: 993  ITMISGLCRKGLQREADKLCRRMKEDGFMPSE 1024



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 104/381 (27%), Positives = 183/381 (48%), Gaps = 4/381 (1%)

Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           +H   SF   I    R        +++ +M  L   P+  TF  +   +    +   A  
Sbjct: 103 SHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFS 162

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWC 218
           + + M + G   ++  +NT++D LCK  ++  A  L      K   ADV++YN +  G C
Sbjct: 163 LVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLC 222

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
              R + A  +L++M+ R +NP++ T+  ++  + + G ++EA   + EM +   + + V
Sbjct: 223 YSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNV 282

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TY +I++G  + G +  A+  FD M + G  P+V TYN +I   CK   V+  + +F+ M
Sbjct: 283 TYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRM 342

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
             +G+  +  TYN +I G C  G++  AL+    M      P++ T+ IL+   C  GEI
Sbjct: 343 SCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEI 402

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           E  L  F+ M        +  YNI+I  +    K+D +  A +L   +   G  P   T+
Sbjct: 403 ESALVKFDDMRESEKYIGIVAYNIMIHGLC---KADKVEKAWELFCRLPVEGVKPDARTY 459

Query: 459 NRVLNGLLLIGNQGLAKEILR 479
             ++ GL   G +  A E++R
Sbjct: 460 TIMILGLCKNGPRREADELIR 480



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 170/351 (48%), Gaps = 3/351 (0%)

Query: 89  FFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERY 148
           FF ++   P    S   F   +   A LR Y TV     +M+   +     +F I+   +
Sbjct: 59  FFEMVHSQPL--PSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCF 116

Query: 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADV 207
               +   A+ +   M + G   S+ +F ++L   C   ++  A++L  +  +  ++ +V
Sbjct: 117 CRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNV 176

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           + YN + +G C     N ALE+L EM  +GL  ++ TYN +L G   +G+  +A R   +
Sbjct: 177 VVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRD 236

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M KR    DVVT+T ++  F   G +  A+ ++  M+   V P+  TYN++I  LC    
Sbjct: 237 MMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGR 296

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
           + +A   F+ M  KG  PN  TYN +I G C    ++  ++   RM  +    ++ TYN 
Sbjct: 297 LYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNT 356

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
           LI  +C  G++   L++F  M S    P++ T+ IL+  + V  + +  LV
Sbjct: 357 LIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALV 407



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 152/307 (49%), Gaps = 4/307 (1%)

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKR 222
           M  +G    L SF  ++   C+  ++  A ++  K+ +  ++  ++++  + +G+CLV R
Sbjct: 97  MELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNR 156

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
              A  ++  MV  G  PN+  YN ++ G  + G++  A     EM+K+    DVVTY T
Sbjct: 157 IGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNT 216

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++ G    G    A  +   M+   + P V T+ A+I V  K+ +++ A  +++EM+   
Sbjct: 217 LLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSS 276

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
             PN+ TYN +I GLC  G +  A +    M    C PNV TYN LI  FC    ++ G+
Sbjct: 277 VDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGM 336

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           +LF++M       ++ TYN LI       K   L VA  +   MV R   P   T   +L
Sbjct: 337 KLFQRMSCEGFNADIFTYNTLIHGYCQVGK---LRVALDIFCWMVSRRVTPDIITHCILL 393

Query: 463 NGLLLIG 469
           +GL + G
Sbjct: 394 HGLCVNG 400



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 152/318 (47%), Gaps = 1/318 (0%)

Query: 92  ILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSA 151
           IL     Y  +   ++  ID   +  +      L++ M+   LG    T+  +      +
Sbjct: 165 ILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYS 224

Query: 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISY 210
           G+   A ++   M +      + +F  ++D+  K+  +++A  L+K + +     + ++Y
Sbjct: 225 GRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTY 284

Query: 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
           N I NG C+  R   A +    M  +G  PN+ TYN ++ G+ +   ++E  + F  M  
Sbjct: 285 NSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSC 344

Query: 271 RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
                D+ TY T++HG+  VG+++ A ++F  MV+  V P + T+  ++  LC    +E+
Sbjct: 345 EGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIES 404

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           A++ F++M           YN++I GLC   ++E+A E   R+  +  +P+ +TY I+I 
Sbjct: 405 ALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMIL 464

Query: 391 YFCDAGEIERGLELFEKM 408
             C  G      EL  +M
Sbjct: 465 GLCKNGPRREADELIRRM 482



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 139/273 (50%), Gaps = 9/273 (3%)

Query: 119 YRTVWT----LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           Y   W+    ++  M   S+ P   TF  + + +V  G  D A +++  M +     +  
Sbjct: 223 YSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNV 282

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
           ++N+I++ LC   ++  A   F +   +G F  +V++YN + +G+C  +  ++ +++ + 
Sbjct: 283 TYNSIINGLCMHGRLYDAKKTFDLMASKGCF-PNVVTYNTLISGFCKFRMVDEGMKLFQR 341

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M   G N ++ TYN ++ GY + G++  A   F  M  R+   D++T+  ++HG  V GE
Sbjct: 342 MSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGE 401

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           I+ A   FD M        +  YN MI  LCK D VE A  +F  +  +G  P++ TY +
Sbjct: 402 IESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTI 461

Query: 353 VIRGLCHTGEMERALEFVGRMKDDE--CEPNVQ 383
           +I GLC  G    A E + RMK++   C+ N +
Sbjct: 462 MILGLCKNGPRREADELIRRMKEEGIICQMNAE 494



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 145/321 (45%), Gaps = 36/321 (11%)

Query: 106  FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
            ++  I+   + RD      + + M+   +     T+  +     ++G+   A ++   M 
Sbjct: 712  YNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMV 771

Query: 166  EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTN 224
            +     ++  F  ++D   KE  + +A NL+K + R     +V +YN + NG+C+     
Sbjct: 772  KRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLG 831

Query: 225  KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
             A  +   MV +G  P++ TYN ++ G+ ++ ++E+  + F EM  +    D  TY T++
Sbjct: 832  DAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLI 891

Query: 285  HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM-------------------------- 318
            HG+   G++  A+ VF+ MV+ GV P + TYN +                          
Sbjct: 892  HGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMD 951

Query: 319  ---------IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
                     IQ LC+ D ++ A  +F  +  KG  P++  Y  +I GLC  G    A + 
Sbjct: 952  VDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKL 1011

Query: 370  VGRMKDDECEPNVQTYNILIR 390
              RMK+D   P+ + Y+  +R
Sbjct: 1012 CRRMKEDGFMPSERIYDETLR 1032



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 120/267 (44%), Gaps = 3/267 (1%)

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
           R   A  +  EMV     P++  +  +L       + E    F  +M+      D+ ++T
Sbjct: 51  RFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFT 110

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
            ++H F     +  A +V   M+  G  PS+ T+ +++   C  + + +A  +   MV  
Sbjct: 111 ILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKS 170

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
           GY PN   YN +I GLC  GE+  ALE +  M+      +V TYN L+   C +G     
Sbjct: 171 GYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDA 230

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
             +   M      P++ T+  LI  +FV++ + D   A +L  EM+     P   T+N +
Sbjct: 231 ARMLRDMMKRSINPDVVTFTALI-DVFVKQGNLD--EAQELYKEMIQSSVDPNNVTYNSI 287

Query: 462 LNGLLLIGNQGLAKEILRLQSRCGRLP 488
           +NGL + G    AK+   L +  G  P
Sbjct: 288 INGLCMHGRLYDAKKTFDLMASKGCFP 314



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 158/357 (44%), Gaps = 40/357 (11%)

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
           H H  R+ L +     +L C   K + A++LF ++ + +    ++ +  +      + + 
Sbjct: 568 HHHHYRERLRN-----ELHCI--KFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKF 620

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           +  + +  +M + G++ +L ++ I++  + R  ++  A     +M K      +VT  ++
Sbjct: 621 DIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSL 680

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++GF      + A ++ D M   G +P+V  YN +I  LCK   + NA+ VF  M  KG 
Sbjct: 681 LNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGI 740

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
             ++ TYN +I GL ++G    A   +  M   + +PNV  +  LI  F   G +     
Sbjct: 741 RADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARN 800

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVR------KKSDDLLVAG----------------- 440
           L+++M     +PN+ TYN LI+   +       K   DL+V+                  
Sbjct: 801 LYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFC 860

Query: 441 ---------KLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
                    KL  EM  +G +   FT+N +++G    G   +A+++      CG  P
Sbjct: 861 KSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSP 917



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 77/161 (47%), Gaps = 4/161 (2%)

Query: 100  AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
            A + ++  H    A +L   + V+   +RM    + P   T+ I+ +   + GK ++A+ 
Sbjct: 884  AFTYNTLIHGYCQAGKLNVAQKVF---NRMVDCGVSPDIVTYNILLDCLCNNGKIEKALV 940

Query: 160  IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWC 218
            +   + +      + ++N I+  LC+  K+++A+ LF+   R   K D I+Y  + +G C
Sbjct: 941  MVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLC 1000

Query: 219  LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
                  +A ++ + M + G  P+   Y+  L+ ++ +   E
Sbjct: 1001 RKGLQREADKLCRRMKEDGFMPSERIYDETLRDHYTSLSAE 1041


>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 109/408 (26%), Positives = 192/408 (47%), Gaps = 42/408 (10%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           ++H +D       ++ +  +   MK   + P   T+ I+ +      + D A K+ + M 
Sbjct: 149 YNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMS 208

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNK 225
             GC     S+ T++  LCK  KV++A  L       F   V  YN + NG C      +
Sbjct: 209 SKGCDPDEVSYTTLISSLCKLGKVKEARELAM----SFTPSVPVYNALINGVCKEYTFEE 264

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
           A ++L EM+++G++PN+ +Y  ++     AG +E +     +M  R C  ++ T+T+++ 
Sbjct: 265 AFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIK 324

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
           GF + G    A + +D M+  GV+P+V  YNA++  LC K S+ +A+ VF +M   G  P
Sbjct: 325 GFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCP 384

Query: 346 NSTTYNVVIRGLCHTGEMERALE-----------------------------------FV 370
           N  TY+ +I G    G+++ A E                                    +
Sbjct: 385 NVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLI 444

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
             M+ + C PN  T+N  I+  C +G ++  +++F++MG+  C PN  TYN L+ S+   
Sbjct: 445 ENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKD 504

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           ++  +   A  L+ +M  RG      T+N ++ G    G  G A E+L
Sbjct: 505 RRFGE---AFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELL 549



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/405 (22%), Positives = 176/405 (43%), Gaps = 39/405 (9%)

Query: 98  TYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRA 157
           ++  S   ++  I+   +   +   + L+  M +  + P   ++  I      AG  + +
Sbjct: 241 SFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELS 300

Query: 158 VKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANG 216
           + +   M   GC  +L++F +++     +    +A + + ++ R     +V++YN + +G
Sbjct: 301 LAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHG 360

Query: 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE---EAWRFFL------- 266
            C  +    A+ V  +M   G  PN+ TY+ ++ GY +AG ++   E W + +       
Sbjct: 361 LCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPN 420

Query: 267 -------------------------EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
                                     M+   C  + VT+ T + G    G +  A  VFD
Sbjct: 421 VVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFD 480

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M N G  P+  TYN ++  L K      A  + ++M  +G   N  TYN +I G C  G
Sbjct: 481 QMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAG 540

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
            +  ALE +G+M     +P+  T NI+I  +C  G++   ++L +++ +G   P++  Y 
Sbjct: 541 MLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYT 600

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
            LIS +      ++ +V    L  M+  G  P   T+N ++  L 
Sbjct: 601 SLISGICTHIGVEEAIV---YLRRMLSEGISPNVATWNVLVRHLF 642



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 126/283 (44%), Gaps = 36/283 (12%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           ++ ++M+     P  +T++ + + Y  AG  D A +++  M  HGC  ++ ++  ++D+L
Sbjct: 372 SVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVL 431

Query: 184 CKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTNKALEV------------- 229
           C+     +AY L +  +      + +++N    G C   R + A++V             
Sbjct: 432 CRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNT 491

Query: 230 ----------------------LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
                                 +K+M  RG+  NL TYN ++ GY  AG + EA     +
Sbjct: 492 TTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGK 551

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M  R  + D +T   ++  +   G++  A  + D +  G   P +  Y ++I  +C    
Sbjct: 552 MVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIG 611

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           VE AI+    M+ +G  PN  T+NV++R L        A++F+
Sbjct: 612 VEEAIVYLRRMLSEGISPNVATWNVLVRHLFSNMGHSGAVQFL 654



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 133/319 (41%), Gaps = 35/319 (10%)

Query: 179 ILDLLCKEKKVEKAYNLFKVFRGK--FKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
           +L  L  E  +  A   FK       FK   ++Y ++       +  +    +L++M   
Sbjct: 46  VLKRLKHEHDITLALEYFKSIANSKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMKLE 105

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           G++ +   +  V+  Y RAG  E+A + F  M+  + +  V  Y  I+         +  
Sbjct: 106 GISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMI 165

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG-------------- 342
             ++  M   G+ P+V TYN +++ LCK + V+ A  +  EM  KG              
Sbjct: 166 NPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISS 225

Query: 343 ----------------YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
                           + P+   YN +I G+C     E A + +  M +   +PNV +Y 
Sbjct: 226 LCKLGKVKEARELAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYT 285

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            +I    DAG +E  L +  KM +  C PNL T+  LI   F++  S + L        M
Sbjct: 286 TIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEAL---DFWDRM 342

Query: 447 VDRGFMPRKFTFNRVLNGL 465
           +  G +P    +N +++GL
Sbjct: 343 IREGVVPNVVAYNALMHGL 361


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 168/332 (50%), Gaps = 7/332 (2%)

Query: 135 GPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN 194
           GP    +  +   Y  AG+ D A ++   M          ++NT++  LC   +   A  
Sbjct: 131 GPDVMVYNAMVAGYCGAGQLDAARRLVADMP---VEPDAYTYNTLIRGLCGRGRTSNALA 187

Query: 195 LFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
           + + +FR     DV++Y ++    C      +A+++L EM D+G  P++ TYN+VL G  
Sbjct: 188 VLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGIC 247

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
           + G++E+A  F   +    CE + V+Y  ++ G       + A  + + M + G  P+V 
Sbjct: 248 QEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVV 307

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           T+N +I  LC++  VE A+ V E+M   G  PNS +YN ++   C   ++ +A+EFV  M
Sbjct: 308 TFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELM 367

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
               C P++ +YN L+   C  GE++  +EL  ++    C P L +YN +I  +    K+
Sbjct: 368 VSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKT 427

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            + L   +LL EM  +G  P   T++ + +GL
Sbjct: 428 KEAL---ELLDEMTSKGLQPDIITYSTIASGL 456



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 108/385 (28%), Positives = 178/385 (46%), Gaps = 37/385 (9%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+  +       G+   A+ +   M   GC   + ++  +L+  CK    ++A  L
Sbjct: 164 PDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKL 223

Query: 196 FKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
                 K  A D+++YNV+ NG C   R   A+E LK +   G  PN  +YNIVLKG F 
Sbjct: 224 LDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFT 283

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
           A + E+A +   EM  + C  +VVT+  ++      G ++ A  V + M   G  P+  +
Sbjct: 284 AERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLS 343

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN ++   CK+  +  A+   E MV +G  P+  +YN ++  LC  GE++ A+E + ++K
Sbjct: 344 YNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLK 403

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF------ 428
           D  C P + +YN +I     AG+ +  LEL ++M S    P++ TY+ + S +       
Sbjct: 404 DKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCREDRIE 463

Query: 429 --VRK--KSDDLLV----------------------AGKLLIEMVDRGFMPRKFTFNRVL 462
             VR   K  D+ +                      A  L   M+  G MP + T+  ++
Sbjct: 464 EAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNESTYTILV 523

Query: 463 NGLLLIGNQGLAKEILRLQSR-CGR 486
            GL     +GL KE   L ++ C R
Sbjct: 524 EGL---AYEGLVKEARELFAQLCSR 545



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 162/313 (51%), Gaps = 5/313 (1%)

Query: 176 FNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235
           +N ++   C   +++ A  L  V     + D  +YN +  G C   RT+ AL VL++M  
Sbjct: 137 YNAMVAGYCGAGQLDAARRL--VADMPVEPDAYTYNTLIRGLCGRGRTSNALAVLEDMFR 194

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
           RG  P++ TY I+L+   +    ++A +   EM  + C  D+VTY  +++G    G ++ 
Sbjct: 195 RGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVED 254

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
           A      + + G  P+  +YN +++ L   +  E+A  + EEM  KG  PN  T+N++I 
Sbjct: 255 AMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLIS 314

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
            LC  G +E A+E + +M    C PN  +YN L+  FC   +I + +E  E M S  C P
Sbjct: 315 FLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYP 374

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
           ++ +YN L++++    + D   VA +LL ++ D+G  P   ++N V++GL   G    A 
Sbjct: 375 DIVSYNTLLTALCRNGEVD---VAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEAL 431

Query: 476 EILRLQSRCGRLP 488
           E+L   +  G  P
Sbjct: 432 ELLDEMTSKGLQP 444



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 147/292 (50%), Gaps = 8/292 (2%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYR--TVWTLVHRMKSLSLGPTQKTFAI 143
           A+ F   L   P+Y   P++  + I L       R      L+  M      P   TF +
Sbjct: 255 AMEFLKNL---PSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNM 311

Query: 144 IAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRG 201
           +       G  + A+++   M ++GC  +  S+N +L   CK+KK+ KA    +  V RG
Sbjct: 312 LISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRG 371

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
            +  D++SYN +    C     + A+E+L ++ D+G +P L +YN V+ G  +AG+ +EA
Sbjct: 372 CYP-DIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEA 430

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
                EM  +  + D++TY+TI  G      I+ A   F  + + G+ P+ A YNA++  
Sbjct: 431 LELLDEMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLG 490

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           LCK+    NAI +F  M+  G MPN +TY +++ GL + G ++ A E   ++
Sbjct: 491 LCKRRETHNAIDLFAYMISSGCMPNESTYTILVEGLAYEGLVKEARELFAQL 542



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 143/283 (50%), Gaps = 1/283 (0%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           + S    P   ++ I+ +   +A + + A K+   M   GC  ++ +FN ++  LC+   
Sbjct: 262 LPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGL 321

Query: 189 VEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           VE A  + +   +     + +SYN + + +C  K+ +KA+E ++ MV RG  P++ +YN 
Sbjct: 322 VEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNT 381

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           +L    R G+++ A     ++K + C   +++Y T++ G    G+ K A  + D M + G
Sbjct: 382 LLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKG 441

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           + P + TY+ +   LC++D +E A+  F ++   G  P +  YN ++ GLC   E   A+
Sbjct: 442 LQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAI 501

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           +    M    C PN  TY IL+      G ++   ELF ++ S
Sbjct: 502 DLFAYMISSGCMPNESTYTILVEGLAYEGLVKEARELFAQLCS 544



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 156/339 (46%), Gaps = 4/339 (1%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           Y+    L+  M      P   T+ ++       G+ + A++   ++  +GC  +  S+N 
Sbjct: 217 YKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNI 276

Query: 179 ILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           +L  L   ++ E A  L +    K    +V+++N++ +  C       A+EVL++M   G
Sbjct: 277 VLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYG 336

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
             PN  +YN +L  + +  +I +A  F   M  R C  D+V+Y T++      GE+  A 
Sbjct: 337 CTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAI 396

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
            +   + + G  P + +YN +I  L K    + A+ + +EM  KG  P+  TY+ +  GL
Sbjct: 397 ELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGL 456

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
           C    +E A+    +++D    P    YN ++   C   E    ++LF  M S  C+PN 
Sbjct: 457 CREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNE 516

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
            TY IL+  +       +   A +L  ++  RG + +K 
Sbjct: 517 STYTILVEGLAYEGLVKE---ARELFAQLCSRGVVNKKL 552



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 99/223 (44%), Gaps = 3/223 (1%)

Query: 90  FNILSYHPTYAHSPSSFDHAIDLAA--RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
             +L   P Y  +P+S  +   L A  + +        V  M S    P   ++  +   
Sbjct: 326 MEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTA 385

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKAD 206
               G+ D A+++   + + GC   L S+NT++D L K  K ++A  L      K  + D
Sbjct: 386 LCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPD 445

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           +I+Y+ IA+G C   R  +A+    ++ D G+ P    YN +L G  +  +   A   F 
Sbjct: 446 IITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFA 505

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
            M    C  +  TYT +V G    G +K AR +F  + + GV+
Sbjct: 506 YMISSGCMPNESTYTILVEGLAYEGLVKEARELFAQLCSRGVV 548



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 87/191 (45%), Gaps = 13/191 (6%)

Query: 291 GEIKRARNVFDGM--VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
           GE+  A  + D +  +N     +V    A+I+ LC      +A  V   +   G  P+  
Sbjct: 81  GELDDALRLVDSLAGLNPPSPAAVGPCAALIKKLCASGRTADARRV---LAASG--PDVM 135

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            YN ++ G C  G+++ A   V  M     EP+  TYN LIR  C  G     L + E M
Sbjct: 136 VYNAMVAGYCGAGQLDAARRLVADMP---VEPDAYTYNTLIRGLCGRGRTSNALAVLEDM 192

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
               CLP++ TY IL+ +   R        A KLL EM D+G  P   T+N VLNG+   
Sbjct: 193 FRRGCLPDVVTYTILLEATCKRSGYKQ---AMKLLDEMHDKGCAPDIVTYNVVLNGICQE 249

Query: 469 GNQGLAKEILR 479
           G    A E L+
Sbjct: 250 GRVEDAMEFLK 260


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 129/480 (26%), Positives = 215/480 (44%), Gaps = 77/480 (16%)

Query: 79  LWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLA-ARLRDYRTVWTLVHRMKSLSLG-- 135
           L+  AL A    + L+  P    +PSS  + +  A A +R + T   L  RMKSLSL   
Sbjct: 63  LFKSALSADKALSPLAVLPHLDGAPSSLPNLLLTASAAVRPHATSLRLYSRMKSLSLPIS 122

Query: 136 -----------PTQKTFAIIAERY------------------VSAGKADRAVKIFLSMHE 166
                      P+   FA+ A+ +                   SAGK  RA+++   M  
Sbjct: 123 TASLHPLLSALPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMP- 181

Query: 167 HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR--GKFKADVISYNVIANGWCLVKRTN 224
              R +  ++NT++   C   +V+ A ++ +  R  G    +  +Y  + +GWC V R +
Sbjct: 182 ---RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVD 238

Query: 225 KALEVLKEM------------------------------------VDRGLNPNLTTYNIV 248
           +A++V  EM                                    V+RG+   + TYN++
Sbjct: 239 EAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLL 298

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           +   F  G+  EA+    EM  +   +DV TY  +++G    G +K+A  +F+ M   GV
Sbjct: 299 VHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGV 358

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
             +V TY ++I  L KK  V+    +F+E V +G  P+   YN +I     +G ++RA E
Sbjct: 359 RATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFE 418

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
            +G M+     P+  TYN L+R  C  G ++   +L ++M      P+L TYN LIS   
Sbjct: 419 IMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYS 478

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           ++    D L   ++  EM+++GF P   T+N ++ GL   G    A+ +++     G  P
Sbjct: 479 MKGDVKDAL---RIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITP 535



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 139/297 (46%), Gaps = 4/297 (1%)

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-D 206
           Y   GK D A+     M E G   ++ ++N ++  L  + +  +AY L +   GK  A D
Sbjct: 267 YCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALD 326

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           V +YN++ NG C      KALE+ + M  RG+   + TY  ++    + GQ++E  + F 
Sbjct: 327 VFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFD 386

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           E  +R    D+V Y  +++     G I RA  +   M    + P   TYN +++ LC   
Sbjct: 387 EAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLG 446

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            V+ A  + +EM  +G  P+  TYN +I G    G+++ AL     M +    P + TYN
Sbjct: 447 RVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYN 506

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV---RKKSDDLLVAG 440
            LI+  C  G+ +    + ++M      P+  TY  LI  +     R   D+ L A 
Sbjct: 507 ALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTEDERAIDDERLAAA 563



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 112/247 (45%), Gaps = 38/247 (15%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
            + LV  M    L     T+ I+   +   G   +A++IF +M   G R ++ ++ +++ 
Sbjct: 311 AYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIY 370

Query: 182 LLCKEKKVEKAYNLFK--VFRG----------------------------------KFKA 205
            L K+ +V++   LF   V RG                                  +   
Sbjct: 371 ALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAP 430

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           D ++YN +  G CL+ R ++A +++ EM  RG+ P+L TYN ++ GY   G +++A R  
Sbjct: 431 DDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIR 490

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
            EM  +     ++TY  ++ G    G+   A N+   MV  G+ P  +TY ++I+ L  +
Sbjct: 491 NEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTE 550

Query: 326 DSVENAI 332
           D  E AI
Sbjct: 551 D--ERAI 555


>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
 gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
 gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 110/392 (28%), Positives = 192/392 (48%), Gaps = 4/392 (1%)

Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           +H   SF   I    R         L+ +M  L   P+  T   +   +    +   AV 
Sbjct: 111 SHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVS 170

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWC 218
           +  SM   G   ++  +NT+++ LCK + +  A  +F     K  +AD ++YN + +G  
Sbjct: 171 LVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLS 230

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
              R   A  +L++MV R ++PN+  +  ++  + + G + EA   + EM +R    +V 
Sbjct: 231 NSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVF 290

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TY ++++GF + G +  A+ +FD MV+ G  P V TYN +I   CK   VE+ + +F EM
Sbjct: 291 TYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEM 350

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
             +G + ++ TYN +I G C  G++  A +   RM D    P++ TYNIL+   C+ G+I
Sbjct: 351 TYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKI 410

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           E+ L + E +       ++ TYNI+I  +    ++D L  A  L   +  +G  P    +
Sbjct: 411 EKALVMVEDLQKSEMDVDIITYNIIIQGLC---RTDKLKEAWCLFRSLTRKGVKPDAIAY 467

Query: 459 NRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
             +++GL   G Q  A ++ R     G +P +
Sbjct: 468 ITMISGLCRKGLQREADKLCRRMKEDGFMPSE 499



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 145/321 (45%), Gaps = 36/321 (11%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           ++  I+   + RD      + + M+   +     T+  +     ++G+   A ++   M 
Sbjct: 187 YNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMV 246

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTN 224
           +     ++  F  ++D   KE  + +A NL+K + R     +V +YN + NG+C+     
Sbjct: 247 KRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLG 306

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
            A  +   MV +G  P++ TYN ++ G+ ++ ++E+  + F EM  +    D  TY T++
Sbjct: 307 DAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLI 366

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM-------------------------- 318
           HG+   G++  A+ VF+ MV+ GV P + TYN +                          
Sbjct: 367 HGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMD 426

Query: 319 ---------IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
                    IQ LC+ D ++ A  +F  +  KG  P++  Y  +I GLC  G    A + 
Sbjct: 427 VDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKL 486

Query: 370 VGRMKDDECEPNVQTYNILIR 390
             RMK+D   P+ + Y+  +R
Sbjct: 487 CRRMKEDGFMPSERIYDETLR 507



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 157/358 (43%), Gaps = 42/358 (11%)

Query: 165 HEHGCRQSL-NSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKR 222
           H H  R+ L N  + I        K + A++LF ++ + +    ++ +  +      + +
Sbjct: 43  HHHHYRERLRNELHCI--------KFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNK 94

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
            +  + +  +M + G++ +L ++ I++  + R  ++  A     +M K      +VT  +
Sbjct: 95  FDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGS 154

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           +++GF      + A ++ D M   G +P+V  YN +I  LCK   + NA+ VF  M  KG
Sbjct: 155 LLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKG 214

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
              ++ TYN +I GL ++G    A   +  M   + +PNV  +  LI  F   G +    
Sbjct: 215 IRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAR 274

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVR------KKSDDLLVAG---------------- 440
            L+++M     +PN+ TYN LI+   +       K   DL+V+                 
Sbjct: 275 NLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGF 334

Query: 441 ----------KLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
                     KL  EM  +G +   FT+N +++G    G   +A+++      CG  P
Sbjct: 335 CKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSP 392



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 77/161 (47%), Gaps = 4/161 (2%)

Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           A + ++  H    A +L   + V+   +RM    + P   T+ I+ +   + GK ++A+ 
Sbjct: 359 AFTYNTLIHGYCQAGKLNVAQKVF---NRMVDCGVSPDIVTYNILLDCLCNNGKIEKALV 415

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWC 218
           +   + +      + ++N I+  LC+  K+++A+ LF+   R   K D I+Y  + +G C
Sbjct: 416 MVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLC 475

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
                 +A ++ + M + G  P+   Y+  L+ ++ +   E
Sbjct: 476 RKGLQREADKLCRRMKEDGFMPSERIYDETLRDHYTSLSAE 516


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 116/398 (29%), Positives = 191/398 (47%), Gaps = 20/398 (5%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           +S  H + +A    D R ++  ++R       P+  T+ ++ +     G  + A  +   
Sbjct: 362 TSLIHGLCMANSFDDARELFADMNRR---GCPPSPVTYNVMIDASCKRGMLEEACDLIKK 418

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKR 222
           M E G    + ++NT++D LCK  +VE+A  LF ++ R     +  S+N I  G C   +
Sbjct: 419 MIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSK 478

Query: 223 TNKALE---------VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
            ++A +         +LK M D G  P++ TY+ ++ G     ++++A     +M KR+C
Sbjct: 479 IDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQC 538

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
           +  VVT  T++HG    G IK AR V D MV+ G  P V TYN ++   C+    E A  
Sbjct: 539 KPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARE 598

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           +  +MV +G  PN  TY  ++ GLC    +  A     +MK   C PN+ TY  LI  FC
Sbjct: 599 LLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFC 658

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD---DLLVAGKLLIEMVDRG 450
            AG+++ GL+LF +M      P+   Y  L + +    +S    ++L  G+  +     G
Sbjct: 659 SAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWG 718

Query: 451 FMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
               +F     ++GLL  G   +A   +R   R G+LP
Sbjct: 719 DEVYRFA----VDGLLEAGKMEMALGFVRDMVRGGQLP 752



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 119/394 (30%), Positives = 181/394 (45%), Gaps = 23/394 (5%)

Query: 102 SPSSFDHAIDL-----AARLRDYRTVWT-LVHRMKSLSLGPTQKTFAIIAERYVSAGKAD 155
           SP S+ + I +     A +L D R ++  L+H      + P+   +  +      A   D
Sbjct: 320 SPDSWSYGILIDGLAKAGKLNDARNLFQKLLHS----GVTPSTVAYTSLIHGLCMANSFD 375

Query: 156 RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIA 214
            A ++F  M+  GC  S  ++N ++D  CK   +E+A +L  K+       DV++YN + 
Sbjct: 376 DARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVM 435

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA---------GQIEEAWRFF 265
           +G C   R  +AL +  EM   G  PN  ++N ++ G  +          G+++EA+R  
Sbjct: 436 DGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLL 495

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
             M       DVVTY+T++ G   +  +  AR++ + MV     P+V T N +I  LCK 
Sbjct: 496 KRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKA 555

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
             ++ A  V + MV  G  P+  TYN ++ G C  G+ ERA E +  M      PNV TY
Sbjct: 556 GRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTY 615

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
             L+   C A  +     +F +M S  C PNL TY  LI       + D  L   KL  E
Sbjct: 616 TALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGL---KLFGE 672

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           MV  G  P    +  +   L   G    A EILR
Sbjct: 673 MVCAGISPDHVVYGTLAAELCKSGRSARALEILR 706



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/369 (28%), Positives = 182/369 (49%), Gaps = 19/369 (5%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T  ++ E + S G+ D+A ++  +M +  C     S+ T+LD LCK  +VE+A  L
Sbjct: 210 PCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRVEEAVRL 269

Query: 196 F-------KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
           F                 +  YN++  G C   R ++A+++ ++M +R ++P+  +Y I+
Sbjct: 270 FGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGIL 329

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           + G  +AG++ +A   F ++         V YT+++HG  +      AR +F  M   G 
Sbjct: 330 IDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGC 389

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
            PS  TYN MI   CK+  +E A  + ++M+  G++P+  TYN V+ GLC +  +E AL 
Sbjct: 390 PPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALL 449

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDA---------GEIERGLELFEKMGSGVCLPNLDT 419
               M+   C PN +++N +I   C           G+++    L ++M     +P++ T
Sbjct: 450 LFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVT 509

Query: 420 YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           Y+ LIS +    + DD   A  LL +MV R   P   T N +++GL   G    A+E+L 
Sbjct: 510 YSTLISGLCSIARVDD---ARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLD 566

Query: 480 LQSRCGRLP 488
                G+ P
Sbjct: 567 AMVSSGQSP 575



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 170/343 (49%), Gaps = 16/343 (4%)

Query: 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DV 207
           + +G+ D A++++       C   L + N +L+  C   +V+KA  L +    +  A D 
Sbjct: 191 MDSGRIDEALQVYRENRREPC---LVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDE 247

Query: 208 ISYNVIANGWCLVKRTNKAL------EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
           +SY  + +G C   R  +A+      E+          P+L  YNIV+ G  +  +I+EA
Sbjct: 248 VSYCTVLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEA 307

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
            + F +M +R    D  +Y  ++ G    G++  ARN+F  +++ GV PS   Y ++I  
Sbjct: 308 VQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHG 367

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           LC  +S ++A  +F +M  +G  P+  TYNV+I   C  G +E A + + +M +D   P+
Sbjct: 368 LCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPD 427

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
           V TYN ++   C +  +E  L LF +M    C PN  ++N +I  +  + K D     GK
Sbjct: 428 VVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGK 487

Query: 442 ------LLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
                 LL  M D G +P   T++ +++GL  I     A+ +L
Sbjct: 488 LDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLL 530



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 157/323 (48%), Gaps = 13/323 (4%)

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYN 211
           + D AV++F  M+E        S+  ++D L K  K+  A NLF K+         ++Y 
Sbjct: 303 RIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYT 362

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
            + +G C+    + A E+  +M  RG  P+  TYN+++    + G +EEA     +M + 
Sbjct: 363 SLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIED 422

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
               DVVTY T++ G      ++ A  +F+ M   G  P+  ++N +I  LC++  ++ A
Sbjct: 423 GHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQA 482

Query: 332 IL---------VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
                      + + M   G++P+  TY+ +I GLC    ++ A   +  M   +C+P V
Sbjct: 483 CQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTV 542

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
            T N LI   C AG I+   E+ + M S    P++ TYN L+       +++    A +L
Sbjct: 543 VTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTER---AREL 599

Query: 443 LIEMVDRGFMPRKFTFNRVLNGL 465
           L +MV RG  P   T+  +++GL
Sbjct: 600 LSDMVARGLAPNVVTYTALVSGL 622



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/400 (23%), Positives = 162/400 (40%), Gaps = 73/400 (18%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P    + ++ +      + +   K+   M + GC     +F TIL  LCK  K+++A  +
Sbjct: 42  PYPDVYNVLIDSLSKRQETEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELV 101

Query: 196 FKVFRGKF--------------------------------KADVISYNVIANGWCLVKRT 223
               R +                                  A+  +YN++    C   R 
Sbjct: 102 MDEMRSRMIPPYFATSSFLAHELCLRGSMERAFQLLEIMPVANSSAYNIVVVALCKAARV 161

Query: 224 NKALEVLKEM------------------------VDRGLN--------PNLTTYNIVLKG 251
           + ALE+ + M                        +D  L         P L T N++L+G
Sbjct: 162 DDALELARTMSEKRIPLAAGSLDSVLVGLMDSGRIDEALQVYRENRREPCLVTLNVLLEG 221

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA------RNVFDGMVN 305
           +   GQ+++A      M   +C  D V+Y T++ G    G ++ A      R +     +
Sbjct: 222 FCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRVEEAVRLFGDRELPSSSSS 281

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
               PS+  YN +I  LC+ D ++ A+ +FE+M  +   P+S +Y ++I GL   G++  
Sbjct: 282 SSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLND 341

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           A     ++      P+   Y  LI   C A   +   ELF  M    C P+  TYN++I 
Sbjct: 342 ARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMID 401

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           +   R   ++   A  L+ +M++ G +P   T+N V++GL
Sbjct: 402 ASCKRGMLEE---ACDLIKKMIEDGHVPDVVTYNTVMDGL 438



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 132/281 (46%), Gaps = 15/281 (5%)

Query: 200 RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
           +G F A ++  +VI  GWC V RT +A+++   +++   +P    YN+++    +  + E
Sbjct: 4   QGIFPAPLLFTSVI-QGWCNVGRTFEAVKIFS-LMEECHSPYPDVYNVLIDSLSKRQETE 61

Query: 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319
              +    M  R C  D  T+TTI+ G    G++  A  V D M +  + P  AT + + 
Sbjct: 62  AVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSFLA 121

Query: 320 QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
             LC + S+E A  + E M     + NS+ YN+V+  LC    ++ ALE    M +    
Sbjct: 122 HELCLRGSMERAFQLLEIMP----VANSSAYNIVVVALCKAARVDDALELARTMSEKRIP 177

Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA 439
               + + ++    D+G I+  L+++ +     CL    T N+L+     R + D    A
Sbjct: 178 LAAGSLDSVLVGLMDSGRIDEALQVYRENRREPCLV---TLNVLLEGFCSRGQVDK---A 231

Query: 440 GKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
            +LL  M D    P + ++  VL+GL      G  +E +RL
Sbjct: 232 RELLRAMPDEECAPDEVSYCTVLDGLC---KAGRVEEAVRL 269



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 114/307 (37%), Gaps = 73/307 (23%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID A +       + L+ RM      P   T++ +     S  + D A  +   M +  C
Sbjct: 479 IDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQC 538

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALE 228
           + ++ + NT++  LCK  ++++A  +        ++ DV++YN + +G C   +T +A E
Sbjct: 539 KPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARE 598

Query: 229 VLKEMVDRGLNPNLTTYNIVLKG-----------------------------------YF 253
           +L +MV RGL PN+ TY  ++ G                                   + 
Sbjct: 599 LLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFC 658

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTI------------------------------ 283
            AGQ++   + F EM       D V Y T+                              
Sbjct: 659 SAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWG 718

Query: 284 -------VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE 336
                  V G    G+++ A      MV GG LP+     +++  LCK      A  V E
Sbjct: 719 DEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLE 778

Query: 337 EMVGKGY 343
           E++   Y
Sbjct: 779 EIMDLAY 785


>gi|449505615|ref|XP_004162522.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g73400, mitochondrial-like [Cucumis sativus]
          Length = 559

 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 137/481 (28%), Positives = 225/481 (46%), Gaps = 33/481 (6%)

Query: 15  FFCIYRGLSPLTTTSPAPLPPAAADPAALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQ 74
           F+C       L       +P   AD    A ++  S     +   L    ++ T  LV  
Sbjct: 69  FYCT------LNEVEGEEIPETNADKLHRA-IVDNSYAHHDMEGALDQVGVYLTTDLVAD 121

Query: 75  IIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAA----RLRDYRTVWTLVHRMK 130
           I+ RL      A  FF   +    Y+H P  ++  ID+ +    +++ +R V  L+  MK
Sbjct: 122 ILHRLRFDEKLAFRFFTWAARQENYSHEPRVYNEMIDILSSTRYKVKQFRIVCDLLDYMK 181

Query: 131 --SLSLGPTQKTFAII---AERYVSA-GKADRAVKIFLSMHEHGCRQ-SLNSFNTILDLL 183
               +  P +  F I+    ++Y++   K  +  K+ +       RQ  +N+FN +LD L
Sbjct: 182 RNDKNTVPVEVLFGILRNYTDKYLTCLQKFAKKKKVIVK------RQPEINAFNLLLDAL 235

Query: 184 CKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           CK   VE A  L K  + K K D  +YN++  GWC V+   + + VL+EM++ G +P+  
Sbjct: 236 CKCSLVEDAEALLKKVKKKLKPDANTYNIMXFGWCRVRNPGRGMRVLEEMIELGFDPDNF 295

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID---VVTYTTIVHGFGVVGEIKRARNVF 300
           TYN  +  + +AG ++EA   F  M+ +   +      TY  ++      G ++      
Sbjct: 296 TYNTAIASFCKAGMLKEACELFEFMRTKGSALSSPTAKTYAIMIVALVNNGRMEECFKFL 355

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           + M+  G LP V+TY  MI+ +C    V+ A +  EEM  KGY P+  TYN  ++ LC  
Sbjct: 356 EYMIKSGCLPDVSTYKEMIEGICVAGKVQEAYMFLEEMGKKGYPPDIVTYNCFLKVLCDN 415

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
              + AL    RM +  C P+VQTYN+LI  F +  +     +++ +M    C  ++D+Y
Sbjct: 416 KMSDDALRHCDRMIEVGCLPSVQTYNMLISMFFEMNDHNGAFQIWLEMDRYGCTRDVDSY 475

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
            I+I  +F   K  D   A  LL E+V++G    K  F +  + L+ +   G  K I RL
Sbjct: 476 CIMIEGLFGCNKVGD---ACLLLEEVVNKGM---KLPFRKFDSFLMQLSVNGNLKGIHRL 529

Query: 481 Q 481
            
Sbjct: 530 S 530


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 180/348 (51%), Gaps = 4/348 (1%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           + T+W +   M +    P   T+  + +     G   +A ++F  M E     ++  +  
Sbjct: 174 FDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTI 233

Query: 179 ILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           ++  LC E ++ +A ++F+  R      ++ +YN + +G+C +    KALE+  EM+  G
Sbjct: 234 LIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDG 293

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
           L PN+ T+ I++ G  +  ++  A +F ++M       ++  Y  ++ G+   G +  A 
Sbjct: 294 LLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEAL 353

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
           ++   +    +LP V TY+ +I+ LC  D +E A  + +EM  KG++PN+ TYN +I G 
Sbjct: 354 SLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGY 413

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
           C  G ME+A+E   +M +   EPN+ T++ LI  +C AG++E  + L+ +M     LP++
Sbjct: 414 CKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDV 473

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
             Y  LI   F   K  +   A +L  EM + G  P  FT + +++GL
Sbjct: 474 VAYTALIDGHF---KDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGL 518



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 98/290 (33%), Positives = 152/290 (52%), Gaps = 7/290 (2%)

Query: 203 FKADVI----SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
           +K DV+    + N++ +G     R +   +V  +MV RG +PN+ TY  ++ G  R G  
Sbjct: 150 YKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDF 209

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
            +A+R F EM ++K    VV YT ++ G      I  A ++F  M N G+LP++ TYN M
Sbjct: 210 LKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTM 269

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           +   CK   V+ A+ ++ EM+G G +PN  T+ ++I GLC T EM  A +F+  M     
Sbjct: 270 MDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGV 329

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
            PN+  YN LI  +C AG +   L L  ++     LP++ TY+ILI  +      D +  
Sbjct: 330 VPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLC---GVDRMEE 386

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           A  LL EM  +GF+P   T+N +++G    GN   A E+    +  G  P
Sbjct: 387 ADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEP 436



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 150/324 (46%), Gaps = 1/324 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   ID   R  D+   + L   M    + PT   + I+        +   A  +F +M
Sbjct: 195 TYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTM 254

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
              G   +L ++NT++D  CK   V+KA  L+    G     +V+++ ++ +G C     
Sbjct: 255 RNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEM 314

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
             A + L +M   G+ PN+  YN ++ GY +AG + EA     E++K +   DV TY+ +
Sbjct: 315 VSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSIL 374

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G   V  ++ A  +   M   G LP+  TYN +I   CK+ ++E AI V  +M  KG 
Sbjct: 375 IKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGI 434

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN  T++ +I G C  G+ME A+     M      P+V  Y  LI      G  +    
Sbjct: 435 EPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFR 494

Query: 404 LFEKMGSGVCLPNLDTYNILISSM 427
           L ++M      PN+ T + LI  +
Sbjct: 495 LHKEMQEAGLHPNVFTLSCLIDGL 518



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 129/263 (49%), Gaps = 16/263 (6%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  MK     P   T+  + + Y   G  ++A+++   M E G   ++ +F+T++D  C
Sbjct: 390 LLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYC 449

Query: 185 KEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           K  K+E A  L+   V +G    DV++Y  + +G      T +A  + KEM + GL+PN+
Sbjct: 450 KAGKMEAAMGLYTEMVIKGLL-PDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNV 508

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFL-------------EMKKRKCEIDVVTYTTIVHGFGV 289
            T + ++ G  + G+I +A + FL             E+ +  C  + V YT ++ G   
Sbjct: 509 FTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCT 568

Query: 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
            G I +A   F  M   G+ P V T   +IQ   +   + + +++  +++  G +PNS+ 
Sbjct: 569 DGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSV 628

Query: 350 YNVVIRGLCHTGEMERALEFVGR 372
           Y V+ +G   +G ++ AL F G 
Sbjct: 629 YRVLAKGYEESGYLKSALSFCGE 651



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 81/205 (39%), Gaps = 21/205 (10%)

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
           +R NKAL++ ++M      P++ T  + L      G ++        ++ R  + D+   
Sbjct: 728 QRPNKALQLFRQMQMDDXQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLN 787

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
            ++++ +   GEI  AR +FDG         V T+ +MI         E A+ +F EM  
Sbjct: 788 NSLINMYSKCGEIGTARRLFDGTQK----KDVTTWTSMIVGHALHGQAEEALQLFTEMKE 843

Query: 341 KG----------------YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD-ECEPNVQ 383
                              +PN  T+  V+    H G +E   +    MK+D    P + 
Sbjct: 844 TNKRARKNKRNGEXESSLVLPNDVTFMGVLMACSHAGLVEEGKQHFRSMKEDYSLRPRIS 903

Query: 384 TYNILIRYFCDAGEIERGLELFEKM 408
            +  ++   C AG +    E   KM
Sbjct: 904 HFGCMVDLLCRAGLLTEAYEFILKM 928



 Score = 42.7 bits (99), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 32/159 (20%), Positives = 64/159 (40%), Gaps = 14/159 (8%)

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS-------------MHE 166
           +  + L   M+   L P   T + + +     G+   A+K+FL+             +  
Sbjct: 490 KEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDR 549

Query: 167 HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTNK 225
             C  +   +  ++  LC + ++ KA   F   R    + DV +  VI  G         
Sbjct: 550 SLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRD 609

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
            + +  +++  G+ PN + Y ++ KGY  +G ++ A  F
Sbjct: 610 VMMLQADILKMGIIPNSSVYRVLAKGYEESGYLKSALSF 648


>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Vitis vinifera]
          Length = 666

 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 109/408 (26%), Positives = 192/408 (47%), Gaps = 42/408 (10%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           ++H +D       ++ +  +   MK   + P   T+ I+ +      + D A K+ + M 
Sbjct: 149 YNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMS 208

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNK 225
             GC     S+ T++  LCK  KV++A  L       F   V  YN + NG C      +
Sbjct: 209 SKGCDPDEVSYTTLISSLCKLGKVKEARELAM----SFTPSVPVYNALINGVCKEYTFEE 264

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
           A ++L EM+++G++PN+ +Y  ++     AG +E +     +M  R C  ++ T+T+++ 
Sbjct: 265 AFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIK 324

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
           GF + G    A + +D M+  GV+P+V  YNA++  LC K S+ +A+ VF +M   G  P
Sbjct: 325 GFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCP 384

Query: 346 NSTTYNVVIRGLCHTGEMERALE-----------------------------------FV 370
           N  TY+ +I G    G+++ A E                                    +
Sbjct: 385 NVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLI 444

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
             M+ + C PN  T+N  I+  C +G ++  +++F++MG+  C PN  TYN L+ S+   
Sbjct: 445 ENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKD 504

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           ++  +   A  L+ +M  RG      T+N ++ G    G  G A E+L
Sbjct: 505 RRFGE---AFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELL 549



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 92/405 (22%), Positives = 176/405 (43%), Gaps = 39/405 (9%)

Query: 98  TYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRA 157
           ++  S   ++  I+   +   +   + L+  M +  + P   ++  I      AG  + +
Sbjct: 241 SFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELS 300

Query: 158 VKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANG 216
           + +   M   GC  +L++F +++     +    +A + + ++ R     +V++YN + +G
Sbjct: 301 LAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHG 360

Query: 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE---EAWRFFL------- 266
            C  +    A+ V  +M   G  PN+ TY+ ++ GY +AG ++   E W + +       
Sbjct: 361 LCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPN 420

Query: 267 -------------------------EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
                                     M+   C  + VT+ T + G    G +  A  VFD
Sbjct: 421 VVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFD 480

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M N G  P+  TYN ++  L K      A  + ++M  +G   N  TYN +I G C  G
Sbjct: 481 QMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAG 540

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
            +  ALE +G+M     +P+  T NI+I  +C  G++   ++L +++ +G   P++  Y 
Sbjct: 541 MLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYT 600

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
            LIS +      ++ +V    L  M+  G  P   T+N ++  L 
Sbjct: 601 SLISGICTHIGVEEAIV---YLRRMLSEGISPNVATWNVLVRHLF 642



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 136/291 (46%), Gaps = 20/291 (6%)

Query: 62  CPSLHWTPQLVDQIIK--------RLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLA 113
           CP++     L+D   K         +WN  +      N+++Y              +D+ 
Sbjct: 383 CPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCM-----------VDVL 431

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            R   +   + L+  M+  +  P   TF    +    +G+ D A+K+F  M   GC  + 
Sbjct: 432 CRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNT 491

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKE 232
            ++N +LD L K+++  +A+ L K    +  + ++++YN I  G+C      +ALE+L +
Sbjct: 492 TTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGK 551

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           MV RG  P+  T NIV+  Y + G++  A +    +   K   D++ YT+++ G      
Sbjct: 552 MVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIG 611

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++ A      M++ G+ P+VAT+N +++ L        A+   + ++G G+
Sbjct: 612 VEEAIVYLRRMLSEGISPNVATWNVLVRHLFSNMGHSGAVQFLDAVLGSGF 662



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 133/319 (41%), Gaps = 35/319 (10%)

Query: 179 ILDLLCKEKKVEKAYNLFKVFRGK--FKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
           +L  L  E  +  A   FK       FK   ++Y ++       +  +    +L++M   
Sbjct: 46  VLKRLKHEHDITLALEYFKSIANSKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMKLE 105

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           G++ +   +  V+  Y RAG  E+A + F  M+  + +  V  Y  I+         +  
Sbjct: 106 GISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMI 165

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG-------------- 342
             ++  M   G+ P+V TYN +++ LCK + V+ A  +  EM  KG              
Sbjct: 166 NPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISS 225

Query: 343 ----------------YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
                           + P+   YN +I G+C     E A + +  M +   +PNV +Y 
Sbjct: 226 LCKLGKVKEARELAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYT 285

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            +I    DAG +E  L +  KM +  C PNL T+  LI   F++  S + L        M
Sbjct: 286 TIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEAL---DFWDRM 342

Query: 447 VDRGFMPRKFTFNRVLNGL 465
           +  G +P    +N +++GL
Sbjct: 343 IREGVVPNVVAYNALMHGL 361


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 112/399 (28%), Positives = 194/399 (48%), Gaps = 9/399 (2%)

Query: 96  HPTYAHS--PSSFDHAIDLAARLRDYRTVW---TLVHRMKSLSLGPTQKTFAIIAERYVS 150
           H + AH   P    +   L A +R  R +     +   M    + P   T+ I+   +  
Sbjct: 158 HLSQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCL 217

Query: 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVIS 209
           AG  D A++ F  M + GC  ++ ++NT++D  CK +K++  + L +    K  + ++IS
Sbjct: 218 AGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLIS 277

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           YNV+ NG C   R  +   VL EM  RG + +  TYN ++KGY + G   +A     EM 
Sbjct: 278 YNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEML 337

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
           +      V+TYT+++H     G + RA    D M   G+ P+  TY  ++    +K  + 
Sbjct: 338 RHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMN 397

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
            A  V +EM+  G+ P+  TYN +I G C  G+M  A+  +  MK+    P+V +Y+ ++
Sbjct: 398 EAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVL 457

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
             FC + +++  L +  KM +    P+  TY+ LI     ++++ +   A  L  EM+  
Sbjct: 458 SGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKE---ACDLFDEMLRV 514

Query: 450 GFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           G  P +FT+  ++N   + G+   A ++       G LP
Sbjct: 515 GLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLP 553



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 129/523 (24%), Positives = 223/523 (42%), Gaps = 69/523 (13%)

Query: 25  LTTTSPAPLPPAAADPAALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHAL 84
           L+T + +P     AD A    L      P      LH  S ++TP+    ++ +  N+  
Sbjct: 12  LSTFTSSPSDSLLADKA----LTFLKRHP----YQLHHLSANFTPEAASNLLLKSQNNQE 63

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSL---------- 134
             L F    + H  +          + +  R + Y+T  TL   + + +L          
Sbjct: 64  LILKFLTWANPHQFFTLRCKCI--TLHILTRFKLYKTAQTLAEDVAAKTLDDEDASLVFR 121

Query: 135 ---------GPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185
                      T   F ++ + Y      D+A+ I      HG    + S+N +LD   +
Sbjct: 122 SLQETYDLCNSTSSVFDLVVKSYSRLCLIDKALSIVHLSQAHGFMPGVLSYNAVLDATIR 181

Query: 186 EKK-VEKAYNLFK----------------VFRGKFKA--------------------DVI 208
            K+ +  A N+FK                + RG   A                    +V+
Sbjct: 182 SKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVV 241

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           +YN + +G+C +++ +   E+L+ M  +GL PNL +YN+V+ G  R G+++E      EM
Sbjct: 242 TYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEM 301

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
            KR   +D VTY T++ G+   G   +A  +   M+  G+ PSV TY ++I  +CK  ++
Sbjct: 302 NKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNM 361

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
             A    ++M  +G  PN  TY  ++ G    G M  A   +  M D+   P+V TYN L
Sbjct: 362 NRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNAL 421

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           I   C AG++   + + E M      P++ +Y+ ++S  F R  S D+  A ++  +MV 
Sbjct: 422 INGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSG-FCR--SYDVDEALRVKRKMVA 478

Query: 449 RGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           +G  P   T++ ++ G         A ++     R G  P +F
Sbjct: 479 KGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEF 521



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 148/326 (45%), Gaps = 51/326 (15%)

Query: 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
           L P+  T+  +      AG  +RA +    M   G   +  ++ T++D   ++  + +AY
Sbjct: 341 LSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAY 400

Query: 194 NLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
            + K +    F   V++YN + NG C+  +   A+ VL++M ++GL P++ +Y+ VL G+
Sbjct: 401 RVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGF 460

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
            R+  ++EA R   +M  +  + D +TY++++ GF      K A ++FD M+  G+ P  
Sbjct: 461 CRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDE 520

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL--------------- 357
            TY A+I   C +  ++ AI +  EMV KG +P+  TY+V+I GL               
Sbjct: 521 FTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLK 580

Query: 358 -----------------------------------CHTGEMERALEFVGRMKDDECEPNV 382
                                              C  G M  A +    M +   +P+ 
Sbjct: 581 LFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDG 640

Query: 383 QTYNILIRYFCDAGEIERGLELFEKM 408
             YN++I   C  G+I +   L+++M
Sbjct: 641 TAYNVMIHGHCRGGDIRKAYSLYKEM 666



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 152/310 (49%), Gaps = 11/310 (3%)

Query: 128 RMKSLSLGPTQK----------TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177
           RMK +S   T+           T+  + + Y   G   +A+ +   M  HG   S+ ++ 
Sbjct: 290 RMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYT 349

Query: 178 TILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
           +++  +CK   + +A       R +    +  +Y  + +G+      N+A  VLKEM+D 
Sbjct: 350 SLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDN 409

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           G +P++ TYN ++ G+  AG++ +A     +MK++    DVV+Y+T++ GF    ++  A
Sbjct: 410 GFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEA 469

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
             V   MV  G+ P   TY+++IQ  C++   + A  +F+EM+  G  P+  TY  +I  
Sbjct: 470 LRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINA 529

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
            C  G++++A++    M +    P+V TY++LI              L  K+     +P+
Sbjct: 530 YCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPS 589

Query: 417 LDTYNILISS 426
             TY+ LI +
Sbjct: 590 DVTYHTLIEN 599



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 71/373 (19%), Positives = 152/373 (40%), Gaps = 58/373 (15%)

Query: 62  CPSLHWTPQLVDQIIKRLW-NHALKALHFFNILSYHPTYAHSPSSFD-HAIDLAARLRDY 119
           CP+      LVD   ++ + N A + L       + P+     +  + H I  A ++ D 
Sbjct: 377 CPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCI--AGKMVD- 433

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
                ++  MK   L P   +++ +   +  +   D A+++   M   G +    +++++
Sbjct: 434 --AIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSL 491

Query: 180 LDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           +   C++++ ++A +LF ++ R     D  +Y  + N +C+     KA+++  EMV++G+
Sbjct: 492 IQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGV 551

Query: 239 NPNLTTYNIVL------------------------------------------------- 249
            P++ TY++++                                                 
Sbjct: 552 LPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSL 611

Query: 250 -KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
            KG+   G + EA + F  M ++  + D   Y  ++HG    G+I++A +++  MV  G 
Sbjct: 612 IKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGF 671

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
           L    T  A+++ L K+  V     V   ++    +  +    V++      G M+  L+
Sbjct: 672 LLHTVTVIALVKTLHKEGKVNELNSVIANVLRSCELSEAEQAKVLVEINHREGNMDVVLD 731

Query: 369 FVGRMKDDECEPN 381
            +  M  D   PN
Sbjct: 732 VLAEMAKDGFLPN 744



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/249 (20%), Positives = 110/249 (44%), Gaps = 16/249 (6%)

Query: 117 RDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSF 176
           R  +    L   M  + L P + T+  +   Y   G   +A+++   M E G    + ++
Sbjct: 499 RRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTY 558

Query: 177 NTILDLLCKEKKVEKAYNLF-KVF-RGKFKADVISYNVIAN--------------GWCLV 220
           + +++ L K+ +  +A  L  K+F      +DV  + +I N              G+C+ 
Sbjct: 559 SVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMK 618

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
               +A +V + M+++   P+ T YN+++ G+ R G I +A+  + EM K    +  VT 
Sbjct: 619 GMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTV 678

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
             +V      G++    +V   ++    L        ++++  ++ +++  + V  EM  
Sbjct: 679 IALVKTLHKEGKVNELNSVIANVLRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAK 738

Query: 341 KGYMPNSTT 349
            G++PN  +
Sbjct: 739 DGFLPNGKS 747


>gi|297843042|ref|XP_002889402.1| hypothetical protein ARALYDRAFT_470202 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335244|gb|EFH65661.1| hypothetical protein ARALYDRAFT_470202 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 490

 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 120/448 (26%), Positives = 220/448 (49%), Gaps = 27/448 (6%)

Query: 27  TTSPAPLPPAAADPAALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRL-WNHA-- 83
           + +  P+     D   +  +I  S     L ++L    +H +  L+D+++KR+ ++H   
Sbjct: 28  SCAKVPVEEEDVDAETVFRMINGSNLQGELKESLSSSGIHLSKDLIDRVLKRVRFSHGNP 87

Query: 84  LKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLV--HRMKSLSLGPTQKTF 141
           ++ L F+        + HS  S D  + +  R R +  +W ++   + K  SL  + +T 
Sbjct: 88  IQTLEFYRYAGARRGFYHSSFSLDTMLYILGRNRKFDQIWEILIETKRKDRSL-ISPRTM 146

Query: 142 AIIAERYVSAGKADRAVKIFLSMH-------EHGCRQSLNSFNTILDLLCKEKKVEKAYN 194
            ++  R        + V+ F           +  C      FN +L  LC+EK +  A N
Sbjct: 147 QVVLGRVAKLCSVRQTVESFWKFKRLVPDFFDTAC------FNALLRTLCQEKSMTDARN 200

Query: 195 LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           ++   + +F+ D+ ++N++ +GW   K + +A    +EM  +GL P++ TYN ++  Y +
Sbjct: 201 VYHSLKHQFQPDLQTFNILLSGW---KSSEEAEAFFEEMKGKGLKPDVVTYNSLIDVYCK 257

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
             +IE+A++   +M++     DV+TYTTI+ G G++G+  +AR V   M   G  P VA 
Sbjct: 258 DREIEKAYKLIDKMREEDETPDVITYTTIIGGLGLIGQPDKAREVLKEMKEYGCYPDVAA 317

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YNA I+  C    + +A  + +EMV KG  PN+TTYN+  R L    ++ R+ E   RM 
Sbjct: 318 YNAAIRNYCIARRLGDADKLVDEMVKKGLSPNATTYNLFFRVLSLANDLGRSWELYERML 377

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
            + C PN Q+   LI+ F    +++  + L+E M     +    +Y+++   +       
Sbjct: 378 GNGCLPNTQSCMFLIKMFKRHEKVDMAMRLWEDM----VVKGFGSYSLVSDVLLDLLCDL 433

Query: 435 -DLLVAGKLLIEMVDRGFMPRKFTFNRV 461
             +  A K L+EMV++G  P   +F R+
Sbjct: 434 AKVEEAEKCLLEMVEKGHRPSNVSFKRI 461



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 118/270 (43%), Gaps = 40/270 (14%)

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN-GGVLPS- 311
           R  + ++ W   +E K++  +  +++  T+    G V ++   R   +       ++P  
Sbjct: 119 RNRKFDQIWEILIETKRK--DRSLISPRTMQVVLGRVAKLCSVRQTVESFWKFKRLVPDF 176

Query: 312 --VATYNAMIQVLCKKDSVENAILVFEE-------------------------------M 338
              A +NA+++ LC++ S+ +A  V+                                 M
Sbjct: 177 FDTACFNALLRTLCQEKSMTDARNVYHSLKHQFQPDLQTFNILLSGWKSSEEAEAFFEEM 236

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
            GKG  P+  TYN +I   C   E+E+A + + +M++++  P+V TY  +I      G+ 
Sbjct: 237 KGKGLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEDETPDVITYTTIIGGLGLIGQP 296

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           ++  E+ ++M    C P++  YN  I +  + ++  D   A KL+ EMV +G  P   T+
Sbjct: 297 DKAREVLKEMKEYGCYPDVAAYNAAIRNYCIARRLGD---ADKLVDEMVKKGLSPNATTY 353

Query: 459 NRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           N     L L  + G + E+       G LP
Sbjct: 354 NLFFRVLSLANDLGRSWELYERMLGNGCLP 383


>gi|297797613|ref|XP_002866691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312526|gb|EFH42950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 638

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 184/384 (47%), Gaps = 4/384 (1%)

Query: 69  PQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHR 128
           P L+++++ R  +       FF   +  P Y HS   +   + + +++R +  VW L+  
Sbjct: 114 PGLIERVLNRCGDAGNLGYRFFVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEE 173

Query: 129 MKSLSLGPTQ-KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           M+  +    + + F ++ +R+ SA    +A+++   M   G       F  +LD LCK  
Sbjct: 174 MRKENPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPTFGLEPDEYVFGCLLDALCKHG 233

Query: 188 KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
            V+ A  LF+  R +F  ++  +  +  GWC  ++  +A  VL +M + G  P++  Y  
Sbjct: 234 SVKDAAKLFEDMRLRFPVNLRYFTSLLYGWCREEKMMEAKYVLVQMKEAGFEPDIVDYTN 293

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           +L GY  AG++ +A+    +M++R  E +   YT ++     V  ++ A  VF  M    
Sbjct: 294 LLSGYANAGKMADAYDLLKDMRRRGFEPNATCYTVLIQALCKVDRMEEAMKVFVEMERYE 353

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
               V TY A++   CK   ++   LV ++M+ KG MP+  TY  ++       ++   L
Sbjct: 354 CEADVVTYTALVSGFCKWGKIDKCYLVLDDMIKKGLMPSQLTYMHIMAAHEKKEKLIECL 413

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           E + +MK  E  P++  YN++IR  C  GE++  + L+ +M      P  DT+ I+I+ +
Sbjct: 414 ELMEKMKQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEGNGLSPGADTFVIIINGL 473

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGF 451
                   LL A     EMV RG 
Sbjct: 474 ---TSQGCLLEACDHFKEMVARGL 494



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/322 (19%), Positives = 124/322 (38%), Gaps = 74/322 (22%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           +MK     P    +  +   Y +AGK   A  +   M   G   +   +  ++  LCK  
Sbjct: 278 QMKEAGFEPDIVDYTNLLSGYANAGKMADAYDLLKDMRRRGFEPNATCYTVLIQALCKVD 337

Query: 188 KVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL-------- 238
           ++E+A  +F ++ R + +ADV++Y  + +G+C   + +K   VL +M+ +GL        
Sbjct: 338 RMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYLVLDDMIKKGLMPSQLTYM 397

Query: 239 ---------------------------NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
                                      +P++  YN+V++   + G+++EA R + EM+  
Sbjct: 398 HIMAAHEKKEKLIECLELMEKMKQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEGN 457

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP--------------------- 310
                  T+  I++G    G +  A + F  MV  G+                       
Sbjct: 458 GLSPGADTFVIIINGLTSQGCLLEACDHFKEMVARGLFSVPQYGTLKLLLNTLLKDKKLE 517

Query: 311 -----------------SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
                            SV+++   I  L  K   + A     EM+   +MP   T+  +
Sbjct: 518 MAKDVWSCITSKGSCELSVSSWTIWIHALFSKGYEKEACSYCLEMIELEFMPQPDTFAKL 577

Query: 354 IRGLCHTGEMERALEFVGRMKD 375
           ++GL      E A+E   ++++
Sbjct: 578 MKGLKKLYHREFAVEITEKVRN 599



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 39/180 (21%), Positives = 79/180 (43%), Gaps = 7/180 (3%)

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKG-YMPNSTTYNVVIRGLCHTGEMERALEF 369
           S+  Y +M+++L K         + EEM  +   +     + V+++       +++A+E 
Sbjct: 147 SIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKKAIEV 206

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP-NLDTYNILISSMF 428
           +  M     EP+   +  L+   C  G ++   +LFE M   +  P NL  +  L+    
Sbjct: 207 LDEMPTFGLEPDEYVFGCLLDALCKHGSVKDAAKLFEDMR--LRFPVNLRYFTSLLYGWC 264

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
              + + ++ A  +L++M + GF P    +  +L+G    G    A ++L+   R G  P
Sbjct: 265 ---REEKMMEAKYVLVQMKEAGFEPDIVDYTNLLSGYANAGKMADAYDLLKDMRRRGFEP 321


>gi|242046334|ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
 gi|241924415|gb|EER97559.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
          Length = 595

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 102/313 (32%), Positives = 170/313 (54%), Gaps = 7/313 (2%)

Query: 156 RAVKIFLSMHEH-GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVI 213
           R++ + +S   H   R +  S+ T++  LC  ++  +A  L +  +    +ADV++Y  +
Sbjct: 105 RSLLVDMSREAHPAARPNAVSYTTVMRGLCASRRTGEAVALLRSMQASGVRADVVTYGTL 164

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
             G C     + ALE+L EM   G+ PN+  Y+ +L+GY R+G+ ++  + F +M +R  
Sbjct: 165 IRGLCDASELDAALELLDEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGI 224

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
           + DV+ +T ++      G+  +A  V D MV  G+ P+V TYN +I  LCK+ SV  A+ 
Sbjct: 225 KPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREALT 284

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM--KDDECEPNVQTYNILIRY 391
           + +EM  KG  P+  TYN +I GL    EM+ A+ F+  M   D   EP+V T+N +I  
Sbjct: 285 LRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEMIQGDTVVEPDVVTFNSVIHG 344

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
            C  G + + +++ E M    C+ NL TYN LI   F+R     + +A  L+ E+   G 
Sbjct: 345 LCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGG-FLRVHK--VKMAMNLMDELAISGL 401

Query: 452 MPRKFTFNRVLNG 464
            P  FT++ ++NG
Sbjct: 402 EPDSFTYSILING 414



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 184/368 (50%), Gaps = 9/368 (2%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M    + P    ++ +   Y  +G+     K+F  M   G +  +  F  ++D LC
Sbjct: 180 LLDEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLC 239

Query: 185 KEKKVEKAYNL--FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           KE K  KA  +    V RG  + +V++YNV+ N  C      +AL + KEM D+G+ P++
Sbjct: 240 KEGKTGKAAKVKDMMVQRG-LEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDV 298

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRK--CEIDVVTYTTIVHGFGVVGEIKRARNVF 300
            TYN ++ G     +++EA  F  EM +     E DVVT+ +++HG   +G + +A  V 
Sbjct: 299 VTYNTLIAGLSGVLEMDEAMSFLEEMIQGDTVVEPDVVTFNSVIHGLCKIGRMTQAVKVR 358

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           + M   G + ++ TYN +I    +   V+ A+ + +E+   G  P+S TY+++I G    
Sbjct: 359 EMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLMDELAISGLEPDSFTYSILINGFSKM 418

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
            E++RA +F+  M+    +  +  Y  L+   C  G +ER + LF +M     L  +  Y
Sbjct: 419 WEVDRAEKFLCTMRQRGIKAELFHYIPLLAAMCQQGMMERAMGLFNEMDKNCGLDAI-AY 477

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           + +I       KS D+    +L+ +M+D G  P   T++ ++N    +G+   A+ +L+ 
Sbjct: 478 STMIHGAC---KSGDMKTVKQLIQDMLDEGLAPDAVTYSMLINMYAKLGDLEEAERVLKQ 534

Query: 481 QSRCGRLP 488
            +  G +P
Sbjct: 535 MTASGFVP 542



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 152/325 (46%), Gaps = 11/325 (3%)

Query: 175 SFNTILDLLCKE--KKVEKAYNLF----KVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
           S+NT+L  LC+     + +A +L     +      + + +SY  +  G C  +RT +A+ 
Sbjct: 85  SYNTVLAALCRRGGDHLRQARSLLVDMSREAHPAARPNAVSYTTVMRGLCASRRTGEAVA 144

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           +L+ M   G+  ++ TY  +++G   A +++ A     EM     + +VV Y+ ++ G+ 
Sbjct: 145 LLRSMQASGVRADVVTYGTLIRGLCDASELDAALELLDEMCGSGVQPNVVVYSCLLRGYC 204

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G  +    VF+ M   G+ P V  +  +I  LCK+     A  V + MV +G  PN  
Sbjct: 205 RSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVV 264

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           TYNV+I  LC  G +  AL     M D    P+V TYN LI       E++  +   E+M
Sbjct: 265 TYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEM 324

Query: 409 --GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
             G  V  P++ T+N +I  +    K   +  A K+   M +RG M    T+N ++ G L
Sbjct: 325 IQGDTVVEPDVVTFNSVIHGLC---KIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFL 381

Query: 467 LIGNQGLAKEILRLQSRCGRLPRQF 491
            +    +A  ++   +  G  P  F
Sbjct: 382 RVHKVKMAMNLMDELAISGLEPDSF 406



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 176/365 (48%), Gaps = 10/365 (2%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           ++ V  +   M    + P    F  + +     GK  +A K+   M + G   ++ ++N 
Sbjct: 209 WQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNV 268

Query: 179 ILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMV--D 235
           +++ LCKE  V +A  L K    K  A DV++YN +  G   V   ++A+  L+EM+  D
Sbjct: 269 LINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEMIQGD 328

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
             + P++ T+N V+ G  + G++ +A +    M +R C  ++VTY  ++ GF  V ++K 
Sbjct: 329 TVVEPDVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKM 388

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
           A N+ D +   G+ P   TY+ +I    K   V+ A      M  +G       Y  ++ 
Sbjct: 389 AMNLMDELAISGLEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLLA 448

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
            +C  G MERA+     M D  C  +   Y+ +I   C +G+++   +L + M      P
Sbjct: 449 AMCQQGMMERAMGLFNEM-DKNCGLDAIAYSTMIHGACKSGDMKTVKQLIQDMLDEGLAP 507

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
           +  TY++LI +M+   K  DL  A ++L +M   GF+P    F+ ++ G      +G   
Sbjct: 508 DAVTYSMLI-NMYA--KLGDLEEAERVLKQMTASGFVPDVAVFDSLIKGY---SAEGQTD 561

Query: 476 EILRL 480
           ++L+L
Sbjct: 562 KVLKL 566



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 127/256 (49%), Gaps = 2/256 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   TF  +       G+  +AVK+   M E GC  +L ++N ++    +  KV+ A NL
Sbjct: 333 PDVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNL 392

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             ++     + D  +Y+++ NG+  +   ++A + L  M  RG+   L  Y  +L    +
Sbjct: 393 MDELAISGLEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLLAAMCQ 452

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G +E A   F EM K  C +D + Y+T++HG    G++K  + +   M++ G+ P   T
Sbjct: 453 QGMMERAMGLFNEMDK-NCGLDAIAYSTMIHGACKSGDMKTVKQLIQDMLDEGLAPDAVT 511

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y+ +I +  K   +E A  V ++M   G++P+   ++ +I+G    G+ ++ L+ +  M+
Sbjct: 512 YSMLINMYAKLGDLEEAERVLKQMTASGFVPDVAVFDSLIKGYSAEGQTDKVLKLIHEMR 571

Query: 375 DDECEPNVQTYNILIR 390
                 + +  + +IR
Sbjct: 572 AKNVAFDPKIISTIIR 587



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 97/207 (46%), Gaps = 10/207 (4%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++++ I    R+   +    L+  +    L P   T++I+   +    + DRA K   +M
Sbjct: 372 TYNYLIGGFLRVHKVKMAMNLMDELAISGLEPDSFTYSILINGFSKMWEVDRAEKFLCTM 431

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTN 224
            + G +  L  +  +L  +C++  +E+A  LF         D I+Y+ + +G C      
Sbjct: 432 RQRGIKAELFHYIPLLAAMCQQGMMERAMGLFNEMDKNCGLDAIAYSTMIHGACKSGDMK 491

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
              +++++M+D GL P+  TY++++  Y + G +EEA R   +M       DV  + +++
Sbjct: 492 TVKQLIQDMLDEGLAPDAVTYSMLINMYAKLGDLEEAERVLKQMTASGFVPDVAVFDSLI 551

Query: 285 HGFGVVGEIK---------RARNV-FD 301
            G+   G+           RA+NV FD
Sbjct: 552 KGYSAEGQTDKVLKLIHEMRAKNVAFD 578


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 97/331 (29%), Positives = 177/331 (53%), Gaps = 7/331 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+ ++   Y  +G+ D A+++   M+       + ++NTIL  LC   K+++A  +
Sbjct: 125 PDVITYNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSGKLKQAMEV 181

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             +  + +   DVI+Y ++    C      +A+++L EM ++G  P++ TYN+++ G  +
Sbjct: 182 LDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICK 241

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G+++EA +F   M    C+ +V+T+  I+      G    A  +   M+  G  PSV T
Sbjct: 242 EGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVT 301

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           +N +I  LC++  +  AI + E+M   G  PNS +YN ++ G C   +M+RA+E++  M 
Sbjct: 302 FNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMV 361

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
              C P++ TYN L+   C  G+++  +E+  ++ S  C P L TYN +I  +    K++
Sbjct: 362 SRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTE 421

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
               A KLL EM  +G  P   T++ +++GL
Sbjct: 422 R---AIKLLDEMRRKGLKPDIITYSSLVSGL 449



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 172/338 (50%), Gaps = 4/338 (1%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           +  +++ P   T+  I      +GK  +A+++     +  C   + ++  +++  CKE  
Sbjct: 150 LDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESG 209

Query: 189 VEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           V +A  L    R K  K DV++YNV+ NG C   R ++A++ L  M   G  PN+ T+NI
Sbjct: 210 VGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNI 269

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           +L+     G+  +A +   +M ++ C   VVT+  +++     G + RA ++ + M   G
Sbjct: 270 ILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHG 329

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
             P+  +YN ++   CK+  ++ AI   + MV +G  P+  TYN ++  LC  G+++ A+
Sbjct: 330 CTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAV 389

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           E + ++    C P + TYN +I      G+ ER ++L ++M      P++ TY+ L+S +
Sbjct: 390 EILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGL 449

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
               K D+   A K   ++   G  P   T+N ++ GL
Sbjct: 450 SREGKVDE---AIKFFHDLEGLGIRPNAITYNSIMLGL 484



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 152/286 (53%), Gaps = 1/286 (0%)

Query: 126 VHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185
           ++ M S    P   T  II     S G+   A K+   M   GC  S+ +FN +++ LC+
Sbjct: 252 LNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCR 311

Query: 186 EKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
           +  + +A ++  K+       + +SYN + +G+C  K+ ++A+E L  MV RG  P++ T
Sbjct: 312 QGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVT 371

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           YN +L    + G+++ A     ++  + C   ++TY T++ G   VG+ +RA  + D M 
Sbjct: 372 YNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMR 431

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
             G+ P + TY++++  L ++  V+ AI  F ++ G G  PN+ TYN ++ GLC + + +
Sbjct: 432 RKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTD 491

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           RA++F+  M    C+P   TY ILI      G  +  L+L  ++ S
Sbjct: 492 RAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCS 537



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 173/341 (50%), Gaps = 5/341 (1%)

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADV 207
           +   GK  +A  +   + + G    + ++N ++   CK  +++ A  +    R     DV
Sbjct: 102 FCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLD--RMNVAPDV 159

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           ++YN I    C   +  +A+EVL   + +   P++ TY I+++   +   + +A +   E
Sbjct: 160 VTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDE 219

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M+ +  + DVVTY  +++G    G +  A    + M + G  P+V T+N +++ +C    
Sbjct: 220 MRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGR 279

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
             +A  +  +M+ KG  P+  T+N++I  LC  G + RA++ + +M    C PN  +YN 
Sbjct: 280 WMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNP 339

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           L+  FC   +++R +E  + M S  C P++ TYN L++++    K D   VA ++L ++ 
Sbjct: 340 LLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVD---VAVEILNQLS 396

Query: 448 DRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            +G  P   T+N V++GL  +G    A ++L    R G  P
Sbjct: 397 SKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKP 437



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 106/343 (30%), Positives = 162/343 (47%), Gaps = 44/343 (12%)

Query: 183 LCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
           L +  ++E  +   +  V+RG    D+I    +  G+C + +T KA  V++ +   G  P
Sbjct: 67  LVRNGELEDGFKFLESMVYRGDI-PDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVP 125

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           ++ TYN+++ GY ++G+I+ A +    M       DVVTY TI+      G++K+A  V 
Sbjct: 126 DVITYNVLISGYCKSGEIDNALQVLDRMNVAP---DVVTYNTILRTLCDSGKLKQAMEVL 182

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           D  +     P V TY  +I+  CK+  V  A+ + +EM  KG  P+  TYNV+I G+C  
Sbjct: 183 DRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKE 242

Query: 361 GEMERALEFV-------------------------GRMKDDE----------CEPNVQTY 385
           G ++ A++F+                         GR  D E          C P+V T+
Sbjct: 243 GRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTF 302

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           NILI + C  G + R +++ EKM    C PN  +YN L+      KK D    A + L  
Sbjct: 303 NILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDR---AIEYLDI 359

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           MV RG  P   T+N +L  L   G   +A EIL   S  G  P
Sbjct: 360 MVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSP 402



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 144/293 (49%), Gaps = 8/293 (2%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYR--TVWTLVHRMKSLSLGPTQKTFA 142
           +A+ F N +   P+Y   P+   H I L +     R      L+  M      P+  TF 
Sbjct: 247 EAIKFLNNM---PSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFN 303

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--R 200
           I+       G   RA+ I   M  HGC  +  S+N +L   CKEKK+++A     +   R
Sbjct: 304 ILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSR 363

Query: 201 GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
           G +  D+++YN +    C   + + A+E+L ++  +G +P L TYN V+ G  + G+ E 
Sbjct: 364 GCY-PDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTER 422

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
           A +   EM+++  + D++TY+++V G    G++  A   F  +   G+ P+  TYN+++ 
Sbjct: 423 AIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIML 482

Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
            LCK    + AI     M+ K   P   TY ++I G+ + G  + AL+ +  +
Sbjct: 483 GLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNEL 535



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 125/240 (52%), Gaps = 6/240 (2%)

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           L+   R G++E+ ++F   M  R    D++  T+++ GF  +G+ K+A  V + +   G 
Sbjct: 64  LRRLVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGA 123

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
           +P V TYN +I   CK   ++NA+ V + M      P+  TYN ++R LC +G++++A+E
Sbjct: 124 VPDVITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQAME 180

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
            + R    EC P+V TY ILI   C    + + ++L ++M +    P++ TYN+LI+ + 
Sbjct: 181 VLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGIC 240

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
              + D+   A K L  M   G  P   T N +L  +   G    A+++L    R G  P
Sbjct: 241 KEGRLDE---AIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSP 297



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 141/297 (47%), Gaps = 4/297 (1%)

Query: 63  PSLHWTPQLVDQ-IIKRLWNHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDY 119
           PS    P ++   II R      + +    +LS       SPS  +F+  I+   R    
Sbjct: 256 PSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLL 315

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
                ++ +M      P   ++  +   +    K DRA++    M   GC   + ++NT+
Sbjct: 316 GRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTL 375

Query: 180 LDLLCKEKKVEKAYNLFKVFRGKFKADV-ISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           L  LCK+ KV+ A  +      K  + V I+YN + +G   V +T +A+++L EM  +GL
Sbjct: 376 LTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGL 435

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
            P++ TY+ ++ G  R G+++EA +FF +++      + +TY +I+ G     +  RA +
Sbjct: 436 KPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAID 495

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
               M++    P+ ATY  +I+ +  +   + A+ +  E+  +G +  S+   V ++
Sbjct: 496 FLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLVKKSSAEQVAVK 552


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 97/331 (29%), Positives = 177/331 (53%), Gaps = 7/331 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+ ++   Y  +G+ D A+++   M+       + ++NTIL  LC   K+++A  +
Sbjct: 182 PDVITYNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSGKLKQAMEV 238

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             +  + +   DVI+Y ++    C      +A+++L EM ++G  P++ TYN+++ G  +
Sbjct: 239 LDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICK 298

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G+++EA +F   M    C+ +V+T+  I+      G    A  +   M+  G  PSV T
Sbjct: 299 EGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVT 358

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           +N +I  LC++  +  AI + E+M   G  PNS +YN ++ G C   +M+RA+E++  M 
Sbjct: 359 FNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMV 418

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
              C P++ TYN L+   C  G+++  +E+  ++ S  C P L TYN +I  +    K++
Sbjct: 419 SRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTE 478

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
               A KLL EM  +G  P   T++ +++GL
Sbjct: 479 R---AIKLLDEMRRKGLKPDIITYSSLVSGL 506



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 172/338 (50%), Gaps = 4/338 (1%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           +  +++ P   T+  I      +GK  +A+++     +  C   + ++  +++  CKE  
Sbjct: 207 LDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESG 266

Query: 189 VEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           V +A  L    R K  K DV++YNV+ NG C   R ++A++ L  M   G  PN+ T+NI
Sbjct: 267 VGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNI 326

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           +L+     G+  +A +   +M ++ C   VVT+  +++     G + RA ++ + M   G
Sbjct: 327 ILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHG 386

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
             P+  +YN ++   CK+  ++ AI   + MV +G  P+  TYN ++  LC  G+++ A+
Sbjct: 387 CTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAV 446

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           E + ++    C P + TYN +I      G+ ER ++L ++M      P++ TY+ L+S +
Sbjct: 447 EILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGL 506

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
               K D+   A K   ++   G  P   T+N ++ GL
Sbjct: 507 SREGKVDE---AIKFFHDLEGLGIRPNAITYNSIMLGL 541



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 152/286 (53%), Gaps = 1/286 (0%)

Query: 126 VHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185
           ++ M S    P   T  II     S G+   A K+   M   GC  S+ +FN +++ LC+
Sbjct: 309 LNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCR 368

Query: 186 EKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
           +  + +A ++  K+       + +SYN + +G+C  K+ ++A+E L  MV RG  P++ T
Sbjct: 369 QGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVT 428

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           YN +L    + G+++ A     ++  + C   ++TY T++ G   VG+ +RA  + D M 
Sbjct: 429 YNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMR 488

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
             G+ P + TY++++  L ++  V+ AI  F ++ G G  PN+ TYN ++ GLC + + +
Sbjct: 489 RKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTD 548

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           RA++F+  M    C+P   TY ILI      G  +  L+L  ++ S
Sbjct: 549 RAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCS 594



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 173/341 (50%), Gaps = 5/341 (1%)

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADV 207
           +   GK  +A  +   + + G    + ++N ++   CK  +++ A  +    R     DV
Sbjct: 159 FCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLD--RMNVAPDV 216

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           ++YN I    C   +  +A+EVL   + +   P++ TY I+++   +   + +A +   E
Sbjct: 217 VTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDE 276

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M+ +  + DVVTY  +++G    G +  A    + M + G  P+V T+N +++ +C    
Sbjct: 277 MRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGR 336

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
             +A  +  +M+ KG  P+  T+N++I  LC  G + RA++ + +M    C PN  +YN 
Sbjct: 337 WMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNP 396

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           L+  FC   +++R +E  + M S  C P++ TYN L++++    K D   VA ++L ++ 
Sbjct: 397 LLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVD---VAVEILNQLS 453

Query: 448 DRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            +G  P   T+N V++GL  +G    A ++L    R G  P
Sbjct: 454 SKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKP 494



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 106/343 (30%), Positives = 162/343 (47%), Gaps = 44/343 (12%)

Query: 183 LCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
           L +  ++E  +   +  V+RG    D+I    +  G+C + +T KA  V++ +   G  P
Sbjct: 124 LVRNGELEDGFKFLESMVYRGDI-PDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVP 182

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           ++ TYN+++ GY ++G+I+ A +    M       DVVTY TI+      G++K+A  V 
Sbjct: 183 DVITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQAMEVL 239

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           D  +     P V TY  +I+  CK+  V  A+ + +EM  KG  P+  TYNV+I G+C  
Sbjct: 240 DRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKE 299

Query: 361 GEMERALEFV-------------------------GRMKDDE----------CEPNVQTY 385
           G ++ A++F+                         GR  D E          C P+V T+
Sbjct: 300 GRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTF 359

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           NILI + C  G + R +++ EKM    C PN  +YN L+      KK D    A + L  
Sbjct: 360 NILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDR---AIEYLDI 416

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           MV RG  P   T+N +L  L   G   +A EIL   S  G  P
Sbjct: 417 MVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSP 459



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 144/293 (49%), Gaps = 8/293 (2%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYR--TVWTLVHRMKSLSLGPTQKTFA 142
           +A+ F N +   P+Y   P+   H I L +     R      L+  M      P+  TF 
Sbjct: 304 EAIKFLNNM---PSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFN 360

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--R 200
           I+       G   RA+ I   M  HGC  +  S+N +L   CKEKK+++A     +   R
Sbjct: 361 ILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSR 420

Query: 201 GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
           G +  D+++YN +    C   + + A+E+L ++  +G +P L TYN V+ G  + G+ E 
Sbjct: 421 GCY-PDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTER 479

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
           A +   EM+++  + D++TY+++V G    G++  A   F  +   G+ P+  TYN+++ 
Sbjct: 480 AIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIML 539

Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
            LCK    + AI     M+ K   P   TY ++I G+ + G  + AL+ +  +
Sbjct: 540 GLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNEL 592



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 125/240 (52%), Gaps = 6/240 (2%)

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           L+   R G++E+ ++F   M  R    D++  T+++ GF  +G+ K+A  V + +   G 
Sbjct: 121 LRRLVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGA 180

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
           +P V TYN +I   CK   ++NA+ V + M      P+  TYN ++R LC +G++++A+E
Sbjct: 181 VPDVITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQAME 237

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
            + R    EC P+V TY ILI   C    + + ++L ++M +    P++ TYN+LI+ + 
Sbjct: 238 VLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGIC 297

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
              + D+   A K L  M   G  P   T N +L  +   G    A+++L    R G  P
Sbjct: 298 KEGRLDE---AIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSP 354



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 141/297 (47%), Gaps = 4/297 (1%)

Query: 63  PSLHWTPQLVDQ-IIKRLWNHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDY 119
           PS    P ++   II R      + +    +LS       SPS  +F+  I+   R    
Sbjct: 313 PSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLL 372

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
                ++ +M      P   ++  +   +    K DRA++    M   GC   + ++NT+
Sbjct: 373 GRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTL 432

Query: 180 LDLLCKEKKVEKAYNLFKVFRGKFKADV-ISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           L  LCK+ KV+ A  +      K  + V I+YN + +G   V +T +A+++L EM  +GL
Sbjct: 433 LTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGL 492

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
            P++ TY+ ++ G  R G+++EA +FF +++      + +TY +I+ G     +  RA +
Sbjct: 493 KPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAID 552

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
               M++    P+ ATY  +I+ +  +   + A+ +  E+  +G +  S+   V ++
Sbjct: 553 FLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLVKKSSAEQVAVK 609


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 181/348 (52%), Gaps = 4/348 (1%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           + T+W +   M +    P   T+  + +     G   +A ++F  M E     ++  +  
Sbjct: 174 FDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTI 233

Query: 179 ILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           ++  LC E ++ +A ++F+  R      ++ +YN + +G+C +    KALE+ +EM+  G
Sbjct: 234 LIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDG 293

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
           L PN+ T+ I++ G  +  ++  A +F ++M       ++  Y  ++ G+   G +  A 
Sbjct: 294 LLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEAL 353

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
           ++   +    +LP V TY+ +I+ LC  D +E A  + +EM  KG++PN+ TYN +I G 
Sbjct: 354 SLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGY 413

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
           C  G ME+A+E   +M +   EPN+ T++ LI  +C AG++E  + L+ +M     LP++
Sbjct: 414 CKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDV 473

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
             Y  LI   F   K  +   A +L  EM + G  P  FT + +++GL
Sbjct: 474 VAYTALIDGHF---KDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGL 518



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 97/290 (33%), Positives = 154/290 (53%), Gaps = 7/290 (2%)

Query: 203 FKADVI----SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
           +K DV+    + N++ +G     R +   +V  +MV RG +PN+ TY  ++ G  R G  
Sbjct: 150 YKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDF 209

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
            +A+R F EM ++K    VV YT ++ G      I  A ++F  M N G+LP++ TYN M
Sbjct: 210 LKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTM 269

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           +   CK   V+ A+ +++EM+G G +PN  T+ ++I GLC T EM  A +F+  M     
Sbjct: 270 MDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGV 329

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
            PN+  YN LI  +C AG +   L L  ++     LP++ TY+ILI  +    + ++   
Sbjct: 330 VPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEE--- 386

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           A  LL EM  +GF+P   T+N +++G    GN   A E+    +  G  P
Sbjct: 387 ADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEP 436



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 151/324 (46%), Gaps = 1/324 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   ID   R  D+   + L   M    + PT   + I+        +   A  +F +M
Sbjct: 195 TYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTM 254

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
              G   +L ++NT++D  CK   V+KA  L++   G     +V+++ ++ +G C     
Sbjct: 255 RNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEM 314

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
             A + L +M   G+ PN+  YN ++ GY +AG + EA     E++K +   DV TY+ +
Sbjct: 315 VSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSIL 374

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G   V  ++ A  +   M   G LP+  TYN +I   CK+ ++E AI V  +M  KG 
Sbjct: 375 IKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGI 434

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN  T++ +I G C  G+ME A+     M      P+V  Y  LI      G  +    
Sbjct: 435 EPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFR 494

Query: 404 LFEKMGSGVCLPNLDTYNILISSM 427
           L ++M      PN+ T + LI  +
Sbjct: 495 LHKEMQEAGLHPNVFTLSCLIDGL 518



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 127/258 (49%), Gaps = 16/258 (6%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  MK     P   T+  + + Y   G  ++A+++   M E G   ++ +F+T++D  C
Sbjct: 390 LLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYC 449

Query: 185 KEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           K  K+E A  L+   V +G    DV++Y  + +G      T +A  + KEM + GL+PN+
Sbjct: 450 KAGKMEAAMGLYTEMVIKGLL-PDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNV 508

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFL-------------EMKKRKCEIDVVTYTTIVHGFGV 289
            T + ++ G  + G+I +A + FL             E+ +  C  + V YT ++ G   
Sbjct: 509 FTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCT 568

Query: 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
            G I +A   F  M   G+ P V T   +IQ   +   + + +++  +++  G +PNS+ 
Sbjct: 569 DGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSV 628

Query: 350 YNVVIRGLCHTGEMERAL 367
           Y V+ +G   +G ++ AL
Sbjct: 629 YRVLAKGYEESGYLKSAL 646



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/206 (19%), Positives = 80/206 (38%), Gaps = 14/206 (6%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F   ID   +         L   M    L P    +  + + +   G    A ++   M
Sbjct: 440 TFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEM 499

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF--------------KVFRGKFKADVISY 210
            E G   ++ + + ++D LCK+ ++  A  LF              ++ R     + + Y
Sbjct: 500 QEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMY 559

Query: 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
             +  G C   R  KA +   +M   GL P++ T  ++++G+FRA  + +      ++ K
Sbjct: 560 TALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILK 619

Query: 271 RKCEIDVVTYTTIVHGFGVVGEIKRA 296
                +   Y  +  G+   G +K A
Sbjct: 620 MGIIPNSSVYRVLAKGYEESGYLKSA 645


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 102/365 (27%), Positives = 183/365 (50%), Gaps = 4/365 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           LV RM      P   T+  I      +G    A+ +   M E   +  + +++TI+D LC
Sbjct: 180 LVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLC 239

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           ++  ++ A +LFK    K  K+ V++YN +  G C   + N    +LK+MV R + PN+ 
Sbjct: 240 RDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVI 299

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           T+N++L  + + G+++EA   + EM  R    +++TY T++ G+ +   +  A N+ D M
Sbjct: 300 TFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLM 359

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           V     P + T+ ++I+  C    V++ + VF  +  +G + N+ TY+++++G C +G++
Sbjct: 360 VRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKI 419

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A E    M      P+V TY IL+   CD G++E+ LE+FE +        +  Y  +
Sbjct: 420 KLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTI 479

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I  M    K +D   A  L   +  +G  P   T+  +++GL   G+   A  +LR    
Sbjct: 480 IEGMCKGGKVED---AWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEE 536

Query: 484 CGRLP 488
            G  P
Sbjct: 537 DGNAP 541



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 188/398 (47%), Gaps = 39/398 (9%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ++   R  D      L+ +M+  ++     T++ I +     G  D A+ +F  M
Sbjct: 195 TYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM 254

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRT 223
              G + S+ ++N+++  LCK  K      L K +   +   +VI++NV+ + +    + 
Sbjct: 255 ETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKL 314

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A E+ KEM+ RG++PN+ TYN ++ GY    ++ EA      M + KC  D+VT+T++
Sbjct: 315 QEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSL 374

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G+ +V  +     VF  +   G++ +  TY+ ++Q  C+   ++ A  +F+EMV  G 
Sbjct: 375 IKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGV 434

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFV-------------------------GRMKD--- 375
           +P+  TY +++ GLC  G++E+ALE                           G+++D   
Sbjct: 435 LPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWN 494

Query: 376 -------DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
                     +PNV TY ++I   C  G +     L  KM      PN  TYN LI +  
Sbjct: 495 LFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHL 554

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
              +  DL  + KL+ EM   GF     +   V++ LL
Sbjct: 555 ---RDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLL 589



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 105/373 (28%), Positives = 175/373 (46%), Gaps = 41/373 (10%)

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNV 212
           K D A+ +F  M       SL  F+     + + K+    +NL   F  + + + I++N+
Sbjct: 68  KKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQ----FNLVLDFCKQLELNGIAHNI 123

Query: 213 -----IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
                + N +C   +T  A  VL +++  G  P+ TT+N ++KG F  G++ EA      
Sbjct: 124 YTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDR 183

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M +  C+ DVVTY +IV+G    G+   A ++   M    V   V TY+ +I  LC+   
Sbjct: 184 MVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGC 243

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
           ++ AI +F+EM  KG   +  TYN ++RGLC  G+       +  M   E  PNV T+N+
Sbjct: 244 IDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNV 303

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS---------------SMFVRKK 432
           L+  F   G+++   EL+++M +    PN+ TYN L+                 + VR K
Sbjct: 304 LLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 363

Query: 433 -SDDL-----LVAGKLLIEMVD-----------RGFMPRKFTFNRVLNGLLLIGNQGLAK 475
            S D+     L+ G  +++ VD           RG +    T++ ++ G    G   LA+
Sbjct: 364 CSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAE 423

Query: 476 EILRLQSRCGRLP 488
           E+ +     G LP
Sbjct: 424 ELFQEMVSHGVLP 436


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/391 (28%), Positives = 191/391 (48%), Gaps = 4/391 (1%)

Query: 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           H+  + +  ++   R        + + +M  L   P   TF  +   +    +   A+ +
Sbjct: 114 HNLCTCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYM 173

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCL 219
           F  M E G   ++  +NTI+D LCK K+V+ A +L         + D ++YN + +G C 
Sbjct: 174 FDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCN 233

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
             R + A  ++  M  R + P++ T+N ++    + G+I EA   + EM +R  + D+VT
Sbjct: 234 SGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVT 293

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y+ +++G  +   +  A  +F  MV+ G  P V TY+ +I   CK   VE+ + +F EM 
Sbjct: 294 YSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMS 353

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            +G + N+ TY V+I+G C  G++  A E    M      PN+ TYN+L+   CD G+IE
Sbjct: 354 QRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIE 413

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
           + L +   M       ++ TYNI+I  M    K+ ++  A  L   +  +G  P  +T+ 
Sbjct: 414 KALVILADMQKSGMDADIVTYNIIIRGMC---KAGEVADAWDLYCSLNLKGLTPDIWTYT 470

Query: 460 RVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
            ++ GL   G +G A  + R     G LP +
Sbjct: 471 AMMLGLYKKGLRGEADALFRKMKEDGILPNE 501



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 162/331 (48%), Gaps = 4/331 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN- 194
           P+   F+ +        K D  + ++  M   G   +L + N +L+  C+  ++  A + 
Sbjct: 79  PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSF 138

Query: 195 LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           L K+ +   + D++++  + NG+C   R   AL +   MV+ G  PN+  YN ++ G  +
Sbjct: 139 LGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCK 198

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
           + Q++ A      M+      D VTY +++ G    G    A  +   M    + P V T
Sbjct: 199 SKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFT 258

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           +NA+I    K+  +  A  ++EEM+ +   P+  TY+++I GLC    ++ A +  G M 
Sbjct: 259 FNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMV 318

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
              C P+V TY+ILI  +C + ++E G++LF +M     + N  TY +LI       ++ 
Sbjct: 319 SKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYC---RAG 375

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            L VA ++   MV  G  P   T+N +L+GL
Sbjct: 376 KLNVAEEIFKWMVFCGVPPNIITYNVLLHGL 406



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 119/269 (44%), Gaps = 38/269 (14%)

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
           +K+ +  + + ++M   G+  NL T NI+L  + R  Q+  A  F  +M K   E D+VT
Sbjct: 94  MKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVT 153

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
                               F  ++NG                C+ D + +A+ +F+ MV
Sbjct: 154 --------------------FGSLLNG---------------FCRGDRIYDALYMFDRMV 178

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             GY PN   YN +I GLC + +++ AL+ + RM+ D   P+  TYN LI   C++G  +
Sbjct: 179 EMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWD 238

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
               +   M      P++ T+N LI +     K   +  A +L  EM+ R   P   T++
Sbjct: 239 DATRMVSCMTKREIYPDVFTFNALIDACV---KEGRISEAEELYEEMIRRSLDPDIVTYS 295

Query: 460 RVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            ++ GL +      A+++       G  P
Sbjct: 296 LLIYGLCMYSRLDEAEQMFGFMVSKGCFP 324


>gi|357438845|ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478747|gb|AES59950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 806

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/397 (28%), Positives = 189/397 (47%), Gaps = 45/397 (11%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           ++ +  L + MKS  L P   T+ ++ +     GK D A K+ + M   GC     S+ T
Sbjct: 160 FKMINALYNNMKSEGLEPNVFTYNVLLKALCQNGKVDGACKLLVEMSNKGCDPDDVSYTT 219

Query: 179 ILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           ++  +CK   V+KA  L      KF+  V  YN + +G C   R  +A +++ EMVDRG+
Sbjct: 220 VISSMCKLGDVDKARELAM----KFEPVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGV 275

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
           +PN+ +Y+ V+      G +E +   F  M  R C  +V T+T+++ GF V G +  A  
Sbjct: 276 DPNVISYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVGDAVG 335

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG-- 356
           +++ M+  GV P+V  YN +I  LC   +++ AI V+ +M      PN TTY+ +I G  
Sbjct: 336 LWNLMIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTIIYGFA 395

Query: 357 ---------------------------------LCHTGEMERALEFVGRMKDDECEPNVQ 383
                                            LC     ++A + +  M  D C P V 
Sbjct: 396 KSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVI 455

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
           T+N  I+  C AG +E  + + ++M    CLPN+ TYN L+  +F   +++    A  L+
Sbjct: 456 TFNNFIKGLCRAGRVEWAMNVLDQMEKYECLPNIRTYNELLDGLF---RANAFREACGLI 512

Query: 444 IEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
            E+ +R       T+N ++ G       G+ +++L+L
Sbjct: 513 RELEERKVEFDCVTYNTIMYGFSF---NGMHQQVLQL 546



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 114/460 (24%), Positives = 208/460 (45%), Gaps = 40/460 (8%)

Query: 64  SLHWTPQLVDQIIK--RLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRT 121
           SL+  P     ++K  R  +  + +L +F  LS   T+ H+  +++  ID   R  +   
Sbjct: 33  SLNVCPVSESHVVKVLRQEHDIVSSLEYFKSLSNSGTFKHTHLTYETMIDKLGRNNEMDG 92

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
           V  L+ +MK  ++  +Q+ F  + + Y  +   ++ +K+F  + E GC  S+  +N +LD
Sbjct: 93  VSYLLQQMKLENVPCSQELFQFVIKCYRRSNLGEQGLKMFYRIREFGCEPSVKIYNLVLD 152

Query: 182 LLCKE---KKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
            L  +   K +   YN  K      + +V +YNV+    C   + + A ++L EM ++G 
Sbjct: 153 ALLSQNLFKMINALYNNMK--SEGLEPNVFTYNVLLKALCQNGKVDGACKLLVEMSNKGC 210

Query: 239 NPNLTTYNIVLKGYFRAGQIE------------------------------EAWRFFLEM 268
           +P+  +Y  V+    + G ++                              EA+    EM
Sbjct: 211 DPDDVSYTTVISSMCKLGDVDKARELAMKFEPVVPVYNALIHGVCKECRFKEAFDLMNEM 270

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
             R  + +V++Y+T++     +G ++ +  VF  M   G  P+V T+ ++I+    +  V
Sbjct: 271 VDRGVDPNVISYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRGRV 330

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
            +A+ ++  M+ +G  PN   YN +I GLC  G M+ A+    +M+ D   PNV TY+ +
Sbjct: 331 GDAVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTI 390

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           I  F  +G++    E + KM +  C PN+  Y  ++  +      D    A  L+  M+ 
Sbjct: 391 IYGFAKSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQ---AFDLIDNMIS 447

Query: 449 RGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            G  P   TFN  + GL   G    A  +L    +   LP
Sbjct: 448 DGCPPTVITFNNFIKGLCRAGRVEWAMNVLDQMEKYECLP 487



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 153/319 (47%), Gaps = 19/319 (5%)

Query: 79  LWNHALKALHFFNILSYHPTYAH---SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLG 135
           LWN  ++     N+++Y+ T  H   S  + D AI          +VW   ++M+  S+ 
Sbjct: 336 LWNLMIREGVSPNVVAYN-TLIHGLCSDGNMDEAI----------SVW---NQMEKDSIR 381

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T++ I   +  +G    A + +  M   GCR ++  +  ++D+LC+    ++A++L
Sbjct: 382 PNVTTYSTIIYGFAKSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDL 441

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
              +        VI++N    G C   R   A+ VL +M      PN+ TYN +L G FR
Sbjct: 442 IDNMISDGCPPTVITFNNFIKGLCRAGRVEWAMNVLDQMEKYECLPNIRTYNELLDGLFR 501

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
           A    EA     E+++RK E D VTY TI++GF   G  ++   +   M+  G+     T
Sbjct: 502 ANAFREACGLIRELEERKVEFDCVTYNTIMYGFSFNGMHQQVLQLLGKMLVNGIKLDTIT 561

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVG-KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
            N  +   CK   V+ AI V + +   K +  +  T+ +++ G+C+    E A+ ++  M
Sbjct: 562 VNTTVNAYCKLGKVKTAIKVLDNISAEKEFRADIITHTIILWGICNWLGTEEAVVYLHEM 621

Query: 374 KDDECEPNVQTYNILIRYF 392
                 PN+ T+N+L+R F
Sbjct: 622 LKRGIFPNIATWNVLVRGF 640



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 143/291 (49%), Gaps = 1/291 (0%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           ++  + L++ M    + P   +++ +       G  + ++ +F  M   GCR ++ +F +
Sbjct: 260 FKEAFDLMNEMVDRGVDPNVISYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQTFTS 319

Query: 179 ILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           ++       +V  A  L+ +  R     +V++YN + +G C     ++A+ V  +M    
Sbjct: 320 LIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDS 379

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
           + PN+TTY+ ++ G+ ++G +  A   + +M    C  +VV YT +V     +    +A 
Sbjct: 380 IRPNVTTYSTIIYGFAKSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAF 439

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
           ++ D M++ G  P+V T+N  I+ LC+   VE A+ V ++M     +PN  TYN ++ GL
Sbjct: 440 DLIDNMISDGCPPTVITFNNFIKGLCRAGRVEWAMNVLDQMEKYECLPNIRTYNELLDGL 499

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
                   A   +  +++ + E +  TYN ++  F   G  ++ L+L  KM
Sbjct: 500 FRANAFREACGLIRELEERKVEFDCVTYNTIMYGFSFNGMHQQVLQLLGKM 550


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 106/319 (33%), Positives = 176/319 (55%), Gaps = 7/319 (2%)

Query: 172 SLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTN---KAL 227
           +L +FNT+++ LCK  K+ KA ++    +   F  +V++YN + +G+C + R     KA 
Sbjct: 229 NLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKAD 288

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
            +LKEMV+  ++PN  T+N+++ G+ +   +  A + F EM+ +  +  VVTY ++V+G 
Sbjct: 289 AILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGL 348

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
              G++  A+ + D M++  + P+V TYNA+I   CKK  +E A  +F+ +  +G  PN 
Sbjct: 349 CNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNV 408

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
            T+N ++ G C  G+ME A      M +    PN  TYN LI  FC  G++E    L  +
Sbjct: 409 ITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNE 468

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467
           M       +  TYNILIS+   +K+      A +L+ EM+D+G  P   T+N +LNG  +
Sbjct: 469 MQCRGVKADTVTYNILISAWCEKKEPKK---AARLIDEMLDKGLKPSHLTYNILLNGYCM 525

Query: 468 IGNQGLAKEILRLQSRCGR 486
            GN   A  + +   + GR
Sbjct: 526 EGNLRAALNLRKQMEKEGR 544



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 167/331 (50%), Gaps = 20/331 (6%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            ++  M    + P   TF ++ + +        A+K+F  M   G + ++ ++N++++ L
Sbjct: 289 AILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGL 348

Query: 184 CKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           C E K+ +A  L  ++     K +VI+YN + NG+C  K   +A E+   +  +GL PN+
Sbjct: 349 CNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNV 408

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            T+N +L GY + G++EEA+     M ++    +  TY  ++ GF   G+++  +N+ + 
Sbjct: 409 ITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNE 468

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M   GV     TYN +I   C+K   + A  + +EM+ KG  P+  TYN+++ G C  G 
Sbjct: 469 MQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGN 528

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           +  AL    +M+ +    NV TYN+LI+ +C  G++E    L  +M     +PN  TY I
Sbjct: 529 LRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTYEI 588

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
           +                     EM+++GF+P
Sbjct: 589 IKE-------------------EMMEKGFLP 600



 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 177/364 (48%), Gaps = 42/364 (11%)

Query: 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
           + P   TF  +       GK ++A  +   M   G   ++ ++NT++D  CK  +V K Y
Sbjct: 226 ISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMY 285

Query: 194 N----LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL 249
                L ++   K   + +++NV+ +G+C  +  + AL+V +EM  +GL P + TYN ++
Sbjct: 286 KADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLV 345

Query: 250 KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
            G    G++ EA     EM     + +V+TY  +++G+     ++ AR +FD +   G+ 
Sbjct: 346 NGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLT 405

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME----- 364
           P+V T+N ++   CK   +E A L+ + M+ KG++PN++TYN +I G C  G+ME     
Sbjct: 406 PNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNL 465

Query: 365 ------------------------------RALEFVGRMKDDECEPNVQTYNILIRYFCD 394
                                         +A   +  M D   +P+  TYNIL+  +C 
Sbjct: 466 LNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCM 525

Query: 395 AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
            G +   L L ++M       N+ TYN+LI     + K +D   A  LL EM+++G +P 
Sbjct: 526 EGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLED---ANGLLNEMLEKGLIPN 582

Query: 455 KFTF 458
           + T+
Sbjct: 583 RTTY 586



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 148/330 (44%), Gaps = 42/330 (12%)

Query: 193 YNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
           ++   V  G+F A+ I  +++   +    +T   LE  K   D     ++ + N +L   
Sbjct: 146 FHSLSVCSGQFCANSIIADMLVLAYVENSKTVLGLEAFKRAGDYRYKLSVLSCNPLLSAL 205

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
            +  +       + EM +RK   +++T+ T+++G   VG++ +A +V D M   G  P+V
Sbjct: 206 VKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNV 265

Query: 313 ATYNAMIQVLCK--------------KDSVEN------------------------AILV 334
            TYN +I   CK              K+ VEN                        A+ V
Sbjct: 266 VTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKV 325

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
           FEEM  +G  P   TYN ++ GLC+ G++  A   +  M     +PNV TYN LI  +C 
Sbjct: 326 FEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCK 385

Query: 395 AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
              +E   ELF+ +G     PN+ T+N L+       K ++  +  K+++E   +GF+P 
Sbjct: 386 KKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLE---KGFLPN 442

Query: 455 KFTFNRVLNGLLLIGNQGLAKEIL-RLQSR 483
             T+N ++ G    G     K +L  +Q R
Sbjct: 443 ASTYNCLIVGFCREGKMEEVKNLLNEMQCR 472



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 110/214 (51%), Gaps = 17/214 (7%)

Query: 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
           L P   TF  +   Y   GK + A  +   M E G   + +++N ++   C+E K+E+  
Sbjct: 404 LTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVK 463

Query: 194 NLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
           NL    + +  KAD ++YN++ + WC  K   KA  ++ EM+D+GL P+  TYNI+L GY
Sbjct: 464 NLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGY 523

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
              G +  A     +M+K     +VVTY  ++ G+   G+++ A  + + M+  G++P+ 
Sbjct: 524 CMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNR 583

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
            TY                 ++ EEM+ KG++P+
Sbjct: 584 TTYE----------------IIKEEMMEKGFLPD 601


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 138/481 (28%), Positives = 224/481 (46%), Gaps = 36/481 (7%)

Query: 25  LTTTSPAPLPPAAADPAALASLILT-----STDPRTLTQTLH-------CPSLHWTPQLV 72
           L   + AP   A     ALA  +       +  PR L+ T H       C +    P+L 
Sbjct: 71  LAAIARAPSSAACRSGPALAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELA 130

Query: 73  DQIIKRLWNHALKALHFFNILSYHPTYAHSPSS-FDHAIDLAARLRDYRTVWTLVHRMKS 131
                +L    L+      I++ H       +   D A+D+            L+HR   
Sbjct: 131 LAFFGQLLRTGLRV---DIIIANHLLKGFCEAKRTDEALDI------------LLHRTPE 175

Query: 132 LSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG--CRQSLNSFNTILDLLCKEKKV 189
           L   P   +++I+ +     GK+ +A  +   M E G  C   + ++NT++D   KE  V
Sbjct: 176 LGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDV 235

Query: 190 EKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
            KA +LFK  V RG    D ++Y+ + +  C  +  +KA   L++MV++G+ PN  TYN 
Sbjct: 236 NKACDLFKEMVQRG-IPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNN 294

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ GY   GQ +EA R F EM+++    DVVT+  ++      G+IK AR+VFD M   G
Sbjct: 295 LIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKG 354

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
             P V +YN M+     K  + +   +F+ M+G G  P   T+NV+I+   + G +++A+
Sbjct: 355 QNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAM 414

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
                M+D   +PNV TY  +I   C  G+++  +E F +M      P+   Y+ LI   
Sbjct: 415 IIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQG- 473

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
           F    S  LL A +L+ E+++ G       F+ ++N L  +G    A+ I  L    G  
Sbjct: 474 FCTHGS--LLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLH 531

Query: 488 P 488
           P
Sbjct: 532 P 532



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 181/400 (45%), Gaps = 44/400 (11%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           SS  HA+    + R        + +M +  + P   T+  +   Y S G+   AV++F  
Sbjct: 258 SSVVHAL---CKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKE 314

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFK-ADVISYNVIANGW----C 218
           M        + +FN ++  LCK  K+++A ++F     K +  DV SYN++ NG+    C
Sbjct: 315 MRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGC 374

Query: 219 LVKRTN-------------------------------KALEVLKEMVDRGLNPNLTTYNI 247
           LV  T+                               KA+ +  EM D G+ PN+ TY  
Sbjct: 375 LVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTT 434

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           V+    R G++++A   F +M  +    D   Y  ++ GF   G + +A+ +   ++N G
Sbjct: 435 VIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNG 494

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           +   +  ++++I  LCK   V +A  +F+  V  G  P +  Y++++ G C  G+ME+AL
Sbjct: 495 MHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKAL 554

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
                M     EPN   Y  L+  +C  G I+ GL LF +M      P+   YNI+I  +
Sbjct: 555 RVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 614

Query: 428 FVRKKSDDLLVAGKLLI-EMVDRGFMPRKFTFNRVLNGLL 466
           F   ++    V  K+   EM + G    K T++ VL GL 
Sbjct: 615 FEAGRT----VPAKVKFHEMTESGIAMNKCTYSIVLRGLF 650



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/399 (23%), Positives = 180/399 (45%), Gaps = 12/399 (3%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAA--RLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           KA+  FN +  H      P+   +   +AA  R+          ++M    + P +  + 
Sbjct: 412 KAMIIFNEMRDHGV---KPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYH 468

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV-FRG 201
            + + + + G   +A ++   +  +G    +  F++I++ LCK  +V  A N+F +    
Sbjct: 469 CLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNV 528

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
                 + Y+++ +G+CLV +  KAL V   MV  G+ PN   Y  ++ GY + G+I+E 
Sbjct: 529 GLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEG 588

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
              F EM ++  +   + Y  I+ G    G    A+  F  M   G+  +  TY+ +++ 
Sbjct: 589 LSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRG 648

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           L K    + AI +F+E+       +  T N +I G+  T  +E A +    +      P 
Sbjct: 649 LFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPC 708

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
           V TY+I+I      G +E   ++F  M +  C P+    N ++  +    K ++++ AG 
Sbjct: 709 VVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELL---KKNEIVRAGA 765

Query: 442 LLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
            L ++ +R F     T   +++   L  ++G  +E +R 
Sbjct: 766 YLSKIDERNFSLEHLTTMLLVD---LFSSKGTCREHIRF 801



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 158/357 (44%), Gaps = 39/357 (10%)

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
            + P   TF ++ + Y + G  D+A+ IF  M +HG                        
Sbjct: 389 GIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHG------------------------ 424

Query: 193 YNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
                      K +V++Y  +    C + + + A+E   +M+D+G+ P+   Y+ +++G+
Sbjct: 425 ----------VKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGF 474

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
              G + +A     E+      +D+V +++I++    +G +  A+N+FD  VN G+ P+ 
Sbjct: 475 CTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTA 534

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
             Y+ ++   C    +E A+ VF+ MV  G  PN   Y  ++ G C  G ++  L     
Sbjct: 535 VVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFRE 594

Query: 373 MKDDECEPNVQTYNILIRYFCDAGE-IERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
           M     +P+   YNI+I    +AG  +   ++  E   SG+ + N  TY+I++  +F  +
Sbjct: 595 MLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAM-NKCTYSIVLRGLFKNR 653

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             D+ +    L  E+          T N ++ G+        AK++    SR G +P
Sbjct: 654 CFDEAIF---LFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVP 707


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 102/365 (27%), Positives = 183/365 (50%), Gaps = 4/365 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           LV RM      P   T+  I      +G    A+ +   M E   +  + +++TI+D LC
Sbjct: 180 LVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLC 239

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           ++  ++ A +LFK    K  K+ V++YN +  G C   + N    +LK+MV R + PN+ 
Sbjct: 240 RDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVI 299

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           T+N++L  + + G+++EA   + EM  R    +++TY T++ G+ +   +  A N+ D M
Sbjct: 300 TFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLM 359

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           V     P + T+ ++I+  C    V++ + VF  +  +G + N+ TY+++++G C +G++
Sbjct: 360 VRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKI 419

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A E    M      P+V TY IL+   CD G++E+ LE+FE +        +  Y  +
Sbjct: 420 KLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTI 479

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I  M    K +D   A  L   +  +G  P   T+  +++GL   G+   A  +LR    
Sbjct: 480 IEGMCKGGKVED---AWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEE 536

Query: 484 CGRLP 488
            G  P
Sbjct: 537 DGNAP 541



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 95/329 (28%), Positives = 173/329 (52%), Gaps = 16/329 (4%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M S  + P   TF ++ + +V  GK   A +++  M   G   ++ ++NT++D  C
Sbjct: 285 LLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYC 344

Query: 185 KEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            + ++ +A N+  +  R K   D++++  +  G+C+VKR +  ++V + +  RGL  N  
Sbjct: 345 MQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAV 404

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY+I+++G+ ++G+I+ A   F EM       DV+TY  ++ G    G++++A  +F+ +
Sbjct: 405 TYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDL 464

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
               +   +  Y  +I+ +CK   VE+A  +F  +  KG  PN  TY V+I GLC  G +
Sbjct: 465 QKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSL 524

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             A   + +M++D   PN  TYN LIR     G++    +L E+M S  C  + D  +I 
Sbjct: 525 SEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKS--CGFSADASSI- 581

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
                  K   D+L++G+L     D+ F+
Sbjct: 582 -------KMVIDMLLSGEL-----DKSFL 598



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 105/373 (28%), Positives = 175/373 (46%), Gaps = 41/373 (10%)

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNV 212
           K D A+ +F  M       SL  F+     + + K+    +NL   F  + + + I++N+
Sbjct: 68  KKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQ----FNLVLDFCKQLELNGIAHNI 123

Query: 213 -----IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
                + N +C   +T  A  VL +++  G  P+ TT+N ++KG F  G++ EA      
Sbjct: 124 YTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDR 183

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M +  C+ DVVTY +IV+G    G+   A ++   M    V   V TY+ +I  LC+   
Sbjct: 184 MVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGC 243

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
           ++ AI +F+EM  KG   +  TYN ++RGLC  G+       +  M   E  PNV T+N+
Sbjct: 244 IDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNV 303

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS---------------SMFVRKK 432
           L+  F   G+++   EL+++M +    PN+ TYN L+                 + VR K
Sbjct: 304 LLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 363

Query: 433 -SDDL-----LVAGKLLIEMVD-----------RGFMPRKFTFNRVLNGLLLIGNQGLAK 475
            S D+     L+ G  +++ VD           RG +    T++ ++ G    G   LA+
Sbjct: 364 CSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAE 423

Query: 476 EILRLQSRCGRLP 488
           E+ +     G LP
Sbjct: 424 ELFQEMVSHGVLP 436


>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
          Length = 550

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 105/312 (33%), Positives = 162/312 (51%), Gaps = 3/312 (0%)

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           N+FN +L LL K    EKA+ +F   +G  K DV S+ ++  G C V   +K  EVL +M
Sbjct: 118 NTFNNLLILLIKSNFFEKAWRVFNETKGNVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQM 177

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
            + GL+PN+  Y  ++ G  + G IE   + F +M +     +  TYT +++GF  +G  
Sbjct: 178 EEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLK 237

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           K    +++ M   G++P+V TYN+MI   C    + NA  +F+EM  +G   N  TYN +
Sbjct: 238 KDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTL 297

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           I GLC    +  A   + RMK D   PN+ +YN LI  +C  G +++   LF +M S   
Sbjct: 298 IGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQ 357

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGL 473
            P+L TYNILI+     K S  +     ++ EM  RG  P K T+  +++ L+   N   
Sbjct: 358 SPSLATYNILIAGFSEAKNSAGVT---DMVREMEARGLSPSKVTYTILMDALVRSDNIEK 414

Query: 474 AKEILRLQSRCG 485
           A +I     + G
Sbjct: 415 AFQIYSSMEKAG 426



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/378 (26%), Positives = 178/378 (47%), Gaps = 12/378 (3%)

Query: 90  FNILSYHPTYAHSPSS--FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
           F +L        SP+   +   ID   +  D      L ++M  L +   Q T+ ++   
Sbjct: 171 FEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLING 230

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-D 206
           +   G     ++++  M   G   ++ ++N+++   C + K+  A+ LF   R +  A +
Sbjct: 231 FFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACN 290

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           V++YN +  G C  +R  +A  ++  M   GL+PNL +YN ++ GY   G +++A   F 
Sbjct: 291 VVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFN 350

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD---GMVNGGVLPSVATYNAMIQVLC 323
           +MK       + TY  ++ GF    E K +  V D    M   G+ PS  TY  ++  L 
Sbjct: 351 QMKSSGQSPSLATYNILIAGF---SEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALV 407

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
           + D++E A  ++  M   G + +   Y V+I GLC  G+M+ A +    + +   +PN  
Sbjct: 408 RSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDV 467

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
            YN +I  +C  G   R L L ++MG    +PN+ +YN   S++ +  K +    A  LL
Sbjct: 468 IYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYN---STIXILCKDEKWTEAEVLL 524

Query: 444 IEMVDRGFMPRKFTFNRV 461
            +M++ G  P    +N +
Sbjct: 525 KDMIELGLKPSISIWNMI 542



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 6/165 (3%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLA--ARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           KA   FN +    +   SPS   + I +A  +  ++   V  +V  M++  L P++ T+ 
Sbjct: 344 KASSLFNQMK---SSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYT 400

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RG 201
           I+ +  V +   ++A +I+ SM + G    +  +  ++  LC    +++A  LFK     
Sbjct: 401 ILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEM 460

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
             K + + YN +  G+C    + +AL +LKEM + G+ PN+ +YN
Sbjct: 461 HLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYN 505



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 83/180 (46%), Gaps = 4/180 (2%)

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
           V  + A+I    +    E A+    +M+G+G +P S T+N ++  L  +   E+A     
Sbjct: 82  VLIHEAIINAHVRSQLPEQALFYXNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFN 141

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
             K +  + +V ++ I+I+  C+ G +++G E+  +M      PN+  Y  LI       
Sbjct: 142 ETKGN-VKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCC--- 197

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           K+ D+    +L  +M +   +  ++T+  ++NG   +G +    E+       G +P  +
Sbjct: 198 KNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVY 257


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 119/387 (30%), Positives = 195/387 (50%), Gaps = 17/387 (4%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRM--KSLSLGPTQKTFA 142
           K LHF   L+    Y+   S  D  +       +  TV ++ H +       G T     
Sbjct: 83  KVLHF---LANSKRYSKVRSFLDSFVK-----NEKHTVSSVFHSLLLDGGRPGATALIID 134

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRG 201
           ++   YV   +   A + F    ++G + SL S N +L  L KE K+     ++K + + 
Sbjct: 135 MLVLAYVKNLELHCAYEAFTRAKDYGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKR 194

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR---AGQI 258
           +   ++ ++N+  NG C   + NKA + +++M   G++PN+ TYN ++ GY +   AG++
Sbjct: 195 RIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKM 254

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
            +A  F  EM   K   + VT+ T++ GF     +  A+  F+ M   G+ P++ TYN++
Sbjct: 255 YKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSL 314

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           I  LC    +E AI ++++MVG G  PN  TYN +I G C    M+ A +    +   E 
Sbjct: 315 INGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQEL 374

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
            PNV T+N +I  +C  G +E G  L   M     LPN+ TYN LI+ +  RK+  DL  
Sbjct: 375 VPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGL-CRKQ--DLQA 431

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           A +LL EM ++G      T+N +++GL
Sbjct: 432 AKELLNEMENKGLKGDVVTYNILIDGL 458



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 183/340 (53%), Gaps = 7/340 (2%)

Query: 126 VHRMKSLSLGPTQKTFAIIAERYV---SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           +  MK+  + P   T+  + + Y    SAGK  +A      M  +    +  +FNT++D 
Sbjct: 223 IEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDG 282

Query: 183 LCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
            CK++ V  A   F+  + +  K ++++YN + NG C   +  +A+++  +MV  GL PN
Sbjct: 283 FCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPN 342

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           + TYN ++ G+ +   ++EA + F ++ K++   +V+T+ T++  +   G ++   ++  
Sbjct: 343 IVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCS 402

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M++ G+LP+V+TYN +I  LC+K  ++ A  +  EM  KG   +  TYN++I GLC   
Sbjct: 403 SMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKND 462

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
           +   A + +  M +   +PN  TYN L+  +C  G+++  L +  +M      PN+ TYN
Sbjct: 463 KSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPNVVTYN 522

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
           +LI       K + L  A  LL EM+++G  P + T++ V
Sbjct: 523 VLIKGYC---KINKLEAANGLLNEMLEKGLNPNRTTYDIV 559



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 160/319 (50%), Gaps = 20/319 (6%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P + TF  + + +        A K F  M + G + ++ ++N++++ LC   K+E+A +L
Sbjct: 271 PNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDL 330

Query: 196 FKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           +    G   K ++++YN + NG+C  K   +A +V  ++  + L PN+ T+N ++  Y +
Sbjct: 331 WDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCK 390

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G +EE +     M       +V TY  ++ G     +++ A+ + + M N G+   V T
Sbjct: 391 EGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVT 450

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN +I  LCK D   NA  +  EM   G  PN  TYN ++ G C  G+++ AL    RM+
Sbjct: 451 YNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRME 510

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
            +  +PNV TYN+LI+ +C   ++E    L  +M      PN  TY+I      VR    
Sbjct: 511 KERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTYDI------VR---- 560

Query: 435 DLLVAGKLLIEMVDRGFMP 453
                    +EM+++GF P
Sbjct: 561 ---------LEMLEKGFSP 570



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 95/195 (48%), Gaps = 9/195 (4%)

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
           E+  A   F    + G   S+ + N ++  L K++ + +   V++EM+ +    N  T+N
Sbjct: 145 ELHCAYEAFTRAKDYGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFN 204

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC---DAGEIERGLELFEKM 408
           + I GLC  G++ +A + +  MK     PNV TYN L+  +C    AG++ +     ++M
Sbjct: 205 IFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEM 264

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
            +    PN  T+N LI       K +++  A K   EM  +G  P   T+N ++NGL   
Sbjct: 265 LANKICPNEVTFNTLIDGFC---KDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLC-- 319

Query: 469 GNQGLAKEILRLQSR 483
            N G  +E + L  +
Sbjct: 320 -NNGKLEEAIDLWDK 333



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 82/146 (56%), Gaps = 1/146 (0%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           S+++  I    R +D +    L++ M++  L     T+ I+ +      K+  A K+   
Sbjct: 414 STYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNE 473

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL-FKVFRGKFKADVISYNVIANGWCLVKR 222
           M   G + +  ++NT++D  C E K++ A N+  ++ + + + +V++YNV+  G+C + +
Sbjct: 474 MFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPNVVTYNVLIKGYCKINK 533

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIV 248
              A  +L EM+++GLNPN TTY+IV
Sbjct: 534 LEAANGLLNEMLEKGLNPNRTTYDIV 559



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 49/108 (45%)

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAG 440
           N+ T+NI I   C AG++ +  +  E M +    PN+ TYN L+     R  +  +  A 
Sbjct: 199 NLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAE 258

Query: 441 KLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             + EM+     P + TFN +++G     N   AK+      + G  P
Sbjct: 259 AFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKP 306


>gi|449442339|ref|XP_004138939.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Cucumis sativus]
          Length = 559

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 137/481 (28%), Positives = 225/481 (46%), Gaps = 33/481 (6%)

Query: 15  FFCIYRGLSPLTTTSPAPLPPAAADPAALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQ 74
           F+C       L       +P   AD    A ++  S     +   L    ++ T  LV  
Sbjct: 69  FYCT------LNEVEGEEIPETNADKLHRA-IVDNSYAHHDMEGALDQVGVYLTTDLVAD 121

Query: 75  IIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAA----RLRDYRTVWTLVHRMK 130
           I+ RL      A  FF   +    Y+H P  ++  ID+ +    +++ +R V  L+  MK
Sbjct: 122 ILHRLRFDEKLAFRFFTWAARQENYSHEPRVYNEMIDILSSTRYKVKQFRIVCDLLDYMK 181

Query: 131 --SLSLGPTQKTFAII---AERYVSA-GKADRAVKIFLSMHEHGCRQ-SLNSFNTILDLL 183
               +  P +  F I+    ++Y++   K  +  K+ +       RQ  +N+FN +LD L
Sbjct: 182 RNDKNTVPVEVLFGILRNYTDKYLTCLQKFAKKKKVIVK------RQPEINAFNLLLDAL 235

Query: 184 CKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           CK   VE A  L K  + K K D  +YN++  GWC V+   + + VL+EM++ G +P+  
Sbjct: 236 CKCSLVEDAEALLKKVKKKLKPDANTYNIMFFGWCRVRNPGRGMRVLEEMIELGFDPDNF 295

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID---VVTYTTIVHGFGVVGEIKRARNVF 300
           TYN  +  + +AG ++EA   F  M+ +   +      TY  ++      G ++      
Sbjct: 296 TYNTAIASFCKAGMLKEACELFEFMRTKGSALSSPTAKTYAIMIVALVNNGRMEECFKFL 355

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           + M+  G LP V+TY  MI+ +C    V+ A +  EEM  KGY P+  TYN  ++ LC  
Sbjct: 356 EYMIKSGCLPDVSTYKEMIEGICVAGKVQEAYMFLEEMGKKGYPPDIVTYNCFLKVLCDN 415

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
              + AL    RM +  C P+VQTYN+LI  F +  +     +++ +M    C  ++D+Y
Sbjct: 416 KMSDDALRHCDRMIEVGCLPSVQTYNMLISMFFEMNDHNGAFQIWLEMDRYGCTRDVDSY 475

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
            I+I  +F   K  D   A  LL E+V++G    K  F +  + L+ +   G  K I RL
Sbjct: 476 CIMIEGLFGCNKVGD---ACLLLEEVVNKGM---KLPFRKFDSFLMQLSVNGNLKGIHRL 529

Query: 481 Q 481
            
Sbjct: 530 S 530


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/397 (26%), Positives = 191/397 (48%), Gaps = 8/397 (2%)

Query: 93  LSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAG 152
           L Y P      ++F+  I+             LV RM      P   T+  I      +G
Sbjct: 152 LGYEP----DTTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSG 207

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYN 211
               A  +   M E   +  + +++TI+D LC++  ++ A +LFK    K  K+ V++YN
Sbjct: 208 DTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYN 267

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
            +  G C   + N    +LK+MV R + PN+ T+N++L  + + G+++EA   + EM  R
Sbjct: 268 SLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITR 327

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
               +++TY T++ G+ +   +  A N+ D MV     P + T+ ++I+  C    V++ 
Sbjct: 328 GISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDG 387

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
           + VF  +  +G + N+ TY+++++G C +G+++ A E    M      P+V TY IL+  
Sbjct: 388 MKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDG 447

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
            CD G++E+ LE+FE +        +  Y  +I  M    K +D   A  L   +  +G 
Sbjct: 448 LCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVED---AWNLFCSLPCKGV 504

Query: 452 MPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            P   T+  +++GL   G+   A  +LR     G  P
Sbjct: 505 KPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAP 541



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 95/329 (28%), Positives = 173/329 (52%), Gaps = 16/329 (4%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M S  + P   TF ++ + +V  GK   A +++  M   G   ++ ++NT++D  C
Sbjct: 285 LLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYC 344

Query: 185 KEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            + ++ +A N+  +  R K   D++++  +  G+C+VKR +  ++V + +  RGL  N  
Sbjct: 345 MQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAV 404

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY+I+++G+ ++G+I+ A   F EM       DV+TY  ++ G    G++++A  +F+ +
Sbjct: 405 TYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDL 464

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
               +   +  Y  +I+ +CK   VE+A  +F  +  KG  PN  TY V+I GLC  G +
Sbjct: 465 QKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSL 524

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             A   + +M++D   PN  TYN LIR     G++    +L E+M S  C  + D  +I 
Sbjct: 525 SEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKS--CGFSADASSI- 581

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
                  K   D+L++G+L     D+ F+
Sbjct: 582 -------KMVIDMLLSGEL-----DKSFL 598



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 181/367 (49%), Gaps = 4/367 (1%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
           AR + +  V     +++   +     T  I+   +    K   A  +   + + G     
Sbjct: 99  ARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDT 158

Query: 174 NSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
            +FNT+++ LC E KV KA  L  ++     + D+++YN I NG C    T+ A ++L++
Sbjct: 159 TTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRK 218

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M +R +  ++ TY+ ++    R G I+ A   F EM+ +  +  VVTY ++V G    G+
Sbjct: 219 MEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK 278

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
                 +   MV+  ++P+V T+N ++ V  K+  ++ A  +++EM+ +G  PN  TYN 
Sbjct: 279 WNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNT 338

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           ++ G C    +  A   +  M  ++C P++ T+  LI+ +C    ++ G+++F  +    
Sbjct: 339 LMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRG 398

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
            + N  TY+IL+       +S  + +A +L  EMV  G +P   T+  +L+GL   G   
Sbjct: 399 LVANAVTYSILVQGFC---QSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLE 455

Query: 473 LAKEILR 479
            A EI  
Sbjct: 456 KALEIFE 462



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 164/323 (50%), Gaps = 4/323 (1%)

Query: 167 HGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNK 225
           +G   ++ + N +++  C+  K   AY++  KV +  ++ D  ++N + NG CL  + +K
Sbjct: 117 NGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSK 176

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
           A+ ++  MV+ G  P++ TYN ++ G  R+G    A+    +M++R  + DV TY+TI+ 
Sbjct: 177 AVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIID 236

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
                G I  A ++F  M   G+  SV TYN++++ LCK     +  L+ ++MV +  +P
Sbjct: 237 SLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVP 296

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           N  T+NV++      G+++ A E    M      PN+ TYN L+  +C    +     + 
Sbjct: 297 NVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML 356

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           + M    C P++ T+  LI    + K+ DD +   K+   +  RG +    T++ ++ G 
Sbjct: 357 DLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGM---KVFRNISKRGLVANAVTYSILVQGF 413

Query: 466 LLIGNQGLAKEILRLQSRCGRLP 488
              G   LA+E+ +     G LP
Sbjct: 414 CQSGKIKLAEELFQEMVSHGVLP 436



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 131/263 (49%), Gaps = 3/263 (1%)

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
           K+ N  L+  K++   G+  N+ T NI++  + R  +   A+    ++ K   E D  T+
Sbjct: 102 KQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTF 161

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
            T+++G  + G++ +A  + D MV  G  P + TYN+++  +C+      A  +  +M  
Sbjct: 162 NTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEE 221

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           +    +  TY+ +I  LC  G ++ A+     M+    + +V TYN L+R  C AG+   
Sbjct: 222 RNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWND 281

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
           G  L + M S   +PN+ T+N+L+  +FV  K   L  A +L  EM+ RG  P   T+N 
Sbjct: 282 GALLLKDMVSREIVPNVITFNVLL-DVFV--KEGKLQEANELYKEMITRGISPNIITYNT 338

Query: 461 VLNGLLLIGNQGLAKEILRLQSR 483
           +++G  +      A  +L L  R
Sbjct: 339 LMDGYCMQNRLSEANNMLDLMVR 361


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 1164

 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 102/361 (28%), Positives = 175/361 (48%), Gaps = 4/361 (1%)

Query: 105  SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
            S+   I+   R  +   VW L+ +MK   L P   T+  I        K   A + F  M
Sbjct: 706  SYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEM 765

Query: 165  HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
               G       + T++D  CK   +  A   F     +    DV++Y  I +G+C +   
Sbjct: 766  IGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDM 825

Query: 224  NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
             +A ++  EM+ RGL P++ T+  ++ GY +AG I++A+R    M +  C  +VVTYTT+
Sbjct: 826  VEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTL 885

Query: 284  VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
            + G    G++  A  +   M   G+ P++ TYN+++  LCK  ++E A+ +  E    G 
Sbjct: 886  IDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGL 945

Query: 344  MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
              ++ TY  ++   C +GEM++A E +  M     +P + T+N+L+  FC  G +E G +
Sbjct: 946  NADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEK 1005

Query: 404  LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
            L   M +    PN  T+N L+    +R   ++L  A  +  +M  RG  P   T+  ++ 
Sbjct: 1006 LLNWMLAKGIAPNATTFNCLVKQYCIR---NNLKAATAIYKDMCSRGVEPDGKTYENLVK 1062

Query: 464  G 464
            G
Sbjct: 1063 G 1063



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 186/384 (48%), Gaps = 6/384 (1%)

Query: 104  SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
            +S++  I    +L        L+  M+     P   +++ +   Y   G+ D+  K+   
Sbjct: 670  ASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLIEK 729

Query: 164  MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKR 222
            M + G + +  ++ +I+ LLC+  K+ +A   F    G+    D I Y  + +G+C    
Sbjct: 730  MKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGD 789

Query: 223  TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
               A +   EM  R + P++ TY  ++ G+ + G + EA + F EM  R  E D++T+T 
Sbjct: 790  IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTE 849

Query: 283  IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
            +++G+   G IK A  V + M+  G  P+V TY  +I  LCK+  +++A  +  EM   G
Sbjct: 850  LMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 909

Query: 343  YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
              PN  TYN ++ GLC +G +E A++ VG  +      +  TY  L+  +C +GE+++  
Sbjct: 910  LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 969

Query: 403  ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
            E+  +M      P + T+N+L++   +    +D     KLL  M+ +G  P   TFN ++
Sbjct: 970  EILTEMLGKGLQPTIVTFNVLMNGFCLHGMLED---GEKLLNWMLAKGIAPNATTFNCLV 1026

Query: 463  NGLLLIGNQGLAKEILRLQSRCGR 486
                +  N   A  I +    C R
Sbjct: 1027 KQYCIRNNLKAATAIYK--DMCSR 1048



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 100/338 (29%), Positives = 162/338 (47%), Gaps = 5/338 (1%)

Query: 135 GPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE-KKVEKAY 193
           G   + F +  +  V  G    A K+F  M  +G   S++S N  L  L K+  K   A 
Sbjct: 595 GSDPRVFDVFFQVLVEFGMLPEARKVFEKMLNYGLVLSVDSCNVYLARLSKDCNKTATAI 654

Query: 194 NLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
            +F+ F       +V SYN++ +  C + R N+A  +L  M  +G  P++ +Y+ V+ GY
Sbjct: 655 IVFREFPEVGVCWNVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGY 714

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
            R G++++ W+   +MK++  + +  TY +I+     + ++  A   F  M+  G+LP  
Sbjct: 715 CRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDT 774

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
             Y  ++   CK+  +  A   F EM  +   P+  TY  +I G C  G+M  A +    
Sbjct: 775 IVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHE 834

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           M     EP++ T+  L+  +C AG I+    +   M    C PN+ TY  LI  +    K
Sbjct: 835 MLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLC---K 891

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
             DL  A +LL EM   G  P  FT+N ++NGL   GN
Sbjct: 892 EGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN 929



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 169/352 (48%), Gaps = 6/352 (1%)

Query: 110  IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
            +D   +  D R      + M S  + P   T+  I   +   G    A K+F  M   G 
Sbjct: 781  VDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGL 840

Query: 170  RQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALE 228
               + +F  +++  CK   ++ A+ +   + +     +V++Y  + +G C     + A E
Sbjct: 841  EPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANE 900

Query: 229  VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
            +L EM   GL PN+ TYN ++ G  ++G IEEA +   E +      D VTYTT++  + 
Sbjct: 901  LLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYC 960

Query: 289  VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
              GE+ +A+ +   M+  G+ P++ T+N ++   C    +E+   +   M+ KG  PN+T
Sbjct: 961  KSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNAT 1020

Query: 349  TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            T+N +++  C    ++ A      M     EP+ +TY  L++  C+A  ++    LF++M
Sbjct: 1021 TFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEM 1080

Query: 409  -GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
             G G  + ++ TY++LI   F RKK    + A ++  +M   G    K  F+
Sbjct: 1081 KGKGFSV-SVSTYSVLIKGFFKRKK---FVEAREIFDQMRRDGLAADKEIFD 1128



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 163/322 (50%), Gaps = 1/322 (0%)

Query: 125  LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
            L H M    L P   TF  +   Y  AG    A ++   M + GC  ++ ++ T++D LC
Sbjct: 831  LFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLC 890

Query: 185  KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            KE  ++ A  L  ++++   + ++ +YN I NG C      +A++++ E    GLN +  
Sbjct: 891  KEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTV 950

Query: 244  TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            TY  ++  Y ++G++++A     EM  +  +  +VT+  +++GF + G ++    + + M
Sbjct: 951  TYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWM 1010

Query: 304  VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            +  G+ P+  T+N +++  C +++++ A  ++++M  +G  P+  TY  +++G C+   M
Sbjct: 1011 LAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNM 1070

Query: 364  ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
            + A      MK      +V TY++LI+ F    +     E+F++M       + + ++  
Sbjct: 1071 KEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGLAADKEIFDFF 1130

Query: 424  ISSMFVRKKSDDLLVAGKLLIE 445
              + +  K+ D ++     +IE
Sbjct: 1131 SDTKYKGKRPDTIVDPIDEIIE 1152


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/348 (30%), Positives = 186/348 (53%), Gaps = 9/348 (2%)

Query: 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK 197
           Q ++ I+       G+   A+K+  ++ +   R  +  ++TI+D LCK+K V++AY+L+ 
Sbjct: 115 QVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYS 174

Query: 198 VF--RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
               RG F  DVI+Y  +  G+CL  +  +A  +L EM+ + +NPN+ TYN ++    + 
Sbjct: 175 EMNARGIF-PDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKE 233

Query: 256 GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
           G+++E+      M K+  + DVV Y+ ++ G+ +VGE+++A+ +F  MV  GV P V +Y
Sbjct: 234 GKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSY 293

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           N +I  LCK   V+ A+ +  EM+ K  +P++ TY+ +I GLC  G +   L+    M  
Sbjct: 294 NIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHH 353

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
                N+ TYN L+   C    +++ + LF KM      PN  TY  LI  +    K   
Sbjct: 354 RGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLC---KGGR 410

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           L     L   ++ +G+    +T+  +++GL     +G+  E L ++S+
Sbjct: 411 LKKGQALFQHLLVKGYCIDVWTYTVMISGLC---KEGMFDEALAMKSK 455



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 181/357 (50%), Gaps = 5/357 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           +   ID   + +     + L   M +  + P   T+  +   +  AG+   A  +   M 
Sbjct: 153 YSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMI 212

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTN 224
                 ++ ++NT++D LCKE KV+++ NL  V   K  K DV+ Y+++ +G+CLV    
Sbjct: 213 LKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQ 272

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           KA ++   MV  G+NP++ +YNI++ G  +  +++EA     EM  +    D VTY++++
Sbjct: 273 KAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLI 332

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            G   +G I    ++   M + G   ++ TYN+++  LCK  +++ AI +F +M  +G  
Sbjct: 333 DGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQ 392

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           PN  TY  +I GLC  G +++       +       +V TY ++I   C  G  +  L +
Sbjct: 393 PNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEALAM 452

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP-RKFTFNR 460
             KM    C+PN  T+ I+I S+  + ++D    A KLL EM+ +G +P R F   R
Sbjct: 453 KSKMEDNGCIPNAVTFEIIIRSLLEKDENDK---AEKLLHEMIAKGLLPFRNFHSER 506



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 195/382 (51%), Gaps = 10/382 (2%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            +++ Y TV +L  +M++  + P   T +I+   +   G+   +  +   + + G + + 
Sbjct: 21  VKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNT 80

Query: 174 NSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
              NT++  LC + +V+K+ +   KV    F+ D +SY ++ NG C +  T  A+++L+ 
Sbjct: 81  IILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIGETRCAIKLLRT 140

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           + DR   P++  Y+ ++ G  +   ++EA+  + EM  R    DV+TYTT++ GF + G+
Sbjct: 141 IEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQ 200

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           +  A  + + M+   + P++ TYN +I  LCK+  V+ +  +   M  KG  P+   Y++
Sbjct: 201 LMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSI 260

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           ++ G C  GE+++A +    M      P+V +YNI+I   C    ++  + L  +M    
Sbjct: 261 LMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKN 320

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
            +P+  TY+ LI  +    +   +L   K   EM  RG      T+N +L+G  L  NQ 
Sbjct: 321 MIPDTVTYSSLIDGLCKLGRITTILDLTK---EMHHRGQPANLVTYNSLLDG--LCKNQN 375

Query: 473 LAKEI---LRLQSRCGRLPRQF 491
           L K I   ++++ R G  P ++
Sbjct: 376 LDKAIALFMKMKER-GIQPNKY 396



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 140/270 (51%), Gaps = 1/270 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   +    +    L+  M    + P    ++I+ + Y   G+  +A +IFL M
Sbjct: 222 TYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVM 281

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRT 223
            + G    + S+N I++ LCK K+V++A NL + +       D ++Y+ + +G C + R 
Sbjct: 282 VQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRI 341

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
              L++ KEM  RG   NL TYN +L G  +   +++A   F++MK+R  + +  TYT +
Sbjct: 342 TTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTAL 401

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G    G +K+ + +F  ++  G    V TY  MI  LCK+   + A+ +  +M   G 
Sbjct: 402 IDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEALAMKSKMEDNGC 461

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           +PN+ T+ ++IR L    E ++A + +  M
Sbjct: 462 IPNAVTFEIIIRSLLEKDENDKAEKLLHEM 491



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 129/285 (45%), Gaps = 3/285 (1%)

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           +I +  I      +K     + + K+M  +G+ P+L T +I++  +   GQ+  ++    
Sbjct: 10  IIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSVLG 69

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           ++ K   + + +   T++ G  + GE+K++ +  D +V  G      +Y  ++  LCK  
Sbjct: 70  KILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIG 129

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
               AI +   +  +   P+   Y+ +I GLC    ++ A +    M      P+V TY 
Sbjct: 130 ETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYT 189

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            LI  FC AG++     L  +M      PN+ TYN LI ++    K  +   +  LL  M
Sbjct: 190 TLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKE---SKNLLAVM 246

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
             +G  P    ++ +++G  L+G    AK+I  +  + G  P  +
Sbjct: 247 TKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVY 291



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 76/157 (48%), Gaps = 3/157 (1%)

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
           +P +  +  ++  L K       I + ++M  KG +P+  T +++I   CH G+M  +  
Sbjct: 7   IPPIIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFS 66

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
            +G++     +PN    N L++  C  GE+++ L   +K+ +     +  +Y IL++ + 
Sbjct: 67  VLGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLC 126

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
              K  +   A KLL  + DR   P    ++ +++GL
Sbjct: 127 ---KIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGL 160


>gi|297821162|ref|XP_002878464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324302|gb|EFH54723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 628

 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 104/408 (25%), Positives = 212/408 (51%), Gaps = 6/408 (1%)

Query: 54  RTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLA 113
           R +   L    +  +  L+ ++++R  +    A  FF   +    +AH   +++  + + 
Sbjct: 155 RNMEAVLDEMKVELSHDLIVKVLERFRHARKPAFRFFCWAAEKQGFAHDSRTYNSMMSIL 214

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
           A+ R + T+ +++  M +  L  T +TF I  + + +A +  +AV IF  M ++  +  +
Sbjct: 215 AKTRQFETMVSVLEEMGTKGL-LTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGV 273

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
            + N +LD L + K  ++A  LF   + +F  ++++Y V+ NGWC V+   +A  +  +M
Sbjct: 274 ETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDM 333

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           +D+GL P++  +N++L+G  R+ +  +A + F  MK +    +V +YT ++  F     +
Sbjct: 334 IDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSM 393

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           + A   FD MV+ G+ P  A Y  +I     +  ++    + +EM  KG+ P+  TYN +
Sbjct: 394 ETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNAL 453

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGV 412
           I+ + +    E A     +M  +E EP++ T+N++++ +  A   E G  ++++M   G+
Sbjct: 454 IKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGSAVWDEMIKKGI 513

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
           C P+ ++Y +LI  +    KS +   A + L EM+D+G       +N+
Sbjct: 514 C-PDDNSYTVLIRGLIGEGKSRE---ACRYLEEMLDKGMKTPLIDYNK 557



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 109/261 (41%), Gaps = 1/261 (0%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           R+R+      + + M    L P      ++ E  + + K   A+K+F  M   G   ++ 
Sbjct: 319 RVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVR 378

Query: 175 SFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           S+  ++   CK+  +E A   F  +     + D   Y  +  G+   K+ +   E+LKEM
Sbjct: 379 SYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEM 438

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
            ++G  P+  TYN ++K        E A R + +M + + E  + T+  I+  + +    
Sbjct: 439 QEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNY 498

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           +    V+D M+  G+ P   +Y  +I+ L  +     A    EEM+ KG       YN  
Sbjct: 499 EMGSAVWDEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPLIDYNKF 558

Query: 354 IRGLCHTGEMERALEFVGRMK 374
                  G+ E   E   R K
Sbjct: 559 AADFHKGGQPEIFEELAQRAK 579



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 5/175 (2%)

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           TYN+M+ +L K    E  + V EEM  KG +    T+ + ++      E ++A+     M
Sbjct: 206 TYNSMMSILAKTRQFETMVSVLEEMGTKGLL-TMETFTIAMKAFAAAKERKKAVGIFELM 264

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
           K  + +  V+T N L+     A   +    LF+K+      PN+ TY +L++  + R + 
Sbjct: 265 KKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFT-PNMMTYTVLLNG-WCRVR- 321

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            +L+ A ++  +M+D+G  P     N +L GLL    +  A ++  +    G  P
Sbjct: 322 -NLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCP 375


>gi|356542070|ref|XP_003539494.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Glycine max]
          Length = 729

 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 131/500 (26%), Positives = 230/500 (46%), Gaps = 67/500 (13%)

Query: 11  NHLHFFCIYRGLSPLTTTSPAPLP----PAAADPAALASLILTSTDPRTLTQTLHCPSLH 66
           +HL +FC          + P   P    P + + +  A  I    + +  +  L    L 
Sbjct: 25  SHLRYFC----------SDPQEQPQNSRPRSRNASKTAKTIANLINSKPFSNGLLSSLLI 74

Query: 67  WTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLV 126
              +       RL     KAL FF   +    ++H+P S+   +++  R R+       +
Sbjct: 75  TISKTTVLRTLRLIKDPSKALRFFK-WTQQKGFSHTPESYFIMLEILGRERNLNVARNFL 133

Query: 127 HRMKSLSLGPTQ---KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
             ++  S G  +   + F  +   Y  AG    ++K+F +M       S+ +FN+++ +L
Sbjct: 134 FSIEKHSKGTVKLEDRFFNSLIRSYAEAGLFKESMKLFQTMKSIAVSPSVVTFNSLMSIL 193

Query: 184 CKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR-GLNPNL 242
            K              RG                    RTN A EV  EM+   G++P+ 
Sbjct: 194 LK--------------RG--------------------RTNMAKEVYDEMLGTYGVSPDT 219

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TYN++++G+ +   ++E +RFF EM+   C+ DVVTY T+V G    G+++ ARN+ +G
Sbjct: 220 CTYNVLIRGFCKNSMVDEGFRFFREMESFNCDADVVTYNTLVDGLCRAGKVRIARNLVNG 279

Query: 303 MVNG--GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           M     G+ P+V TY  +I+  C K  VE A++V EEM  +G  PN  TYN +++GLC  
Sbjct: 280 MGKKCEGLNPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLKPNMITYNTLVKGLCEA 339

Query: 361 GEMERALEFVGRMKDDEC-EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419
            ++++  + + RMK D    P+  T+N +I   C AG ++  L++FE M       +  +
Sbjct: 340 HKLDKMKDVLERMKSDGGFSPDTFTFNTIIHLHCCAGNLDEALKVFESMKKFRIPADSAS 399

Query: 420 YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF-------TFNRVLNGLLLIGNQG 472
           Y+ LI S+  +   D   +A +L  E+ ++  +  KF       ++N +   L   G   
Sbjct: 400 YSTLIRSLCQKGDYD---MAEQLFDELFEKEILLSKFGSKPLAASYNPIFESLCEHGKTK 456

Query: 473 LAKEILR-LQSRCGRLPRQF 491
            A+ ++R L  R  + P+ +
Sbjct: 457 KAERVIRQLMKRGTQDPQSY 476



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 168/348 (48%), Gaps = 17/348 (4%)

Query: 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
           + P   T+ ++   +      D   + F  M    C   + ++NT++D LC+  KV  A 
Sbjct: 215 VSPDTCTYNVLIRGFCKNSMVDEGFRFFREMESFNCDADVVTYNTLVDGLCRAGKVRIAR 274

Query: 194 NLFKVFRGKFKA---DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250
           NL      K +    +V++Y  +  G+C+ +   +AL VL+EM  RGL PN+ TYN ++K
Sbjct: 275 NLVNGMGKKCEGLNPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLKPNMITYNTLVK 334

Query: 251 GYFRAGQIEEAWRFFLEMKKRKC-EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
           G   A ++++       MK       D  T+ TI+H     G +  A  VF+ M    + 
Sbjct: 335 GLCEAHKLDKMKDVLERMKSDGGFSPDTFTFNTIIHLHCCAGNLDEALKVFESMKKFRIP 394

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGK-------GYMPNSTTYNVVIRGLCHTGE 362
              A+Y+ +I+ LC+K   + A  +F+E+  K       G  P + +YN +   LC  G+
Sbjct: 395 ADSASYSTLIRSLCQKGDYDMAEQLFDELFEKEILLSKFGSKPLAASYNPIFESLCEHGK 454

Query: 363 MERALEFVGR-MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
            ++A   + + MK    +P  Q+Y  +I   C  G  E G EL   M     LP+++ Y+
Sbjct: 455 TKKAERVIRQLMKRGTQDP--QSYTTVIMGHCKEGAYESGYELLMWMLRRDFLPDIEIYD 512

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
            LI   F++K  D  L+A + L +M+   + P+  T++ VL  LL  G
Sbjct: 513 YLIDG-FLQK--DKPLLAKETLEKMLKSSYQPKTSTWHSVLAKLLEKG 557



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 70/337 (20%), Positives = 135/337 (40%), Gaps = 47/337 (13%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRM--KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFL 162
           +++  +D   R    R    LV+ M  K   L P   T+  +   Y    + + A+ +  
Sbjct: 256 TYNTLVDGLCRAGKVRIARNLVNGMGKKCEGLNPNVVTYTTLIRGYCMKQEVEEALVVLE 315

Query: 163 SMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR--GKFKADVISYNVIANGWCLV 220
            M   G + ++ ++NT++  LC+  K++K  ++ +  +  G F  D  ++N I +  C  
Sbjct: 316 EMTSRGLKPNMITYNTLVKGLCEAHKLDKMKDVLERMKSDGGFSPDTFTFNTIIHLHCCA 375

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
              ++AL+V                                   F  MKK +   D  +Y
Sbjct: 376 GNLDEALKV-----------------------------------FESMKKFRIPADSASY 400

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVL-------PSVATYNAMIQVLCKKDSVENAIL 333
           +T++      G+   A  +FD +    +L       P  A+YN + + LC+    + A  
Sbjct: 401 STLIRSLCQKGDYDMAEQLFDELFEKEILLSKFGSKPLAASYNPIFESLCEHGKTKKAER 460

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           V  +++ +G   +  +Y  VI G C  G  E   E +  M   +  P+++ Y+ LI  F 
Sbjct: 461 VIRQLMKRG-TQDPQSYTTVIMGHCKEGAYESGYELLMWMLRRDFLPDIEIYDYLIDGFL 519

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
              +     E  EKM      P   T++ +++ +  +
Sbjct: 520 QKDKPLLAKETLEKMLKSSYQPKTSTWHSVLAKLLEK 556



 Score = 46.2 bits (108), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 42/222 (18%), Positives = 85/222 (38%), Gaps = 7/222 (3%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH-------GCRQSLNSFNTILD 181
           MK   +     +++ +       G  D A ++F  + E        G +    S+N I +
Sbjct: 388 MKKFRIPADSASYSTLIRSLCQKGDYDMAEQLFDELFEKEILLSKFGSKPLAASYNPIFE 447

Query: 182 LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
            LC+  K +KA  + +    +   D  SY  +  G C         E+L  M+ R   P+
Sbjct: 448 SLCEHGKTKKAERVIRQLMKRGTQDPQSYTTVIMGHCKEGAYESGYELLMWMLRRDFLPD 507

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           +  Y+ ++ G+ +  +   A     +M K   +    T+ +++      G    +  V  
Sbjct: 508 IEIYDYLIDGFLQKDKPLLAKETLEKMLKSSYQPKTSTWHSVLAKLLEKGCAHESSCVIV 567

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
            M+   V  ++      +Q+L  ++  E A  +   +   GY
Sbjct: 568 MMLEKNVRQNINLSTESLQLLFGREQHERAFEIINLLYKNGY 609


>gi|356549210|ref|XP_003542990.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Glycine max]
          Length = 648

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 104/417 (24%), Positives = 207/417 (49%), Gaps = 4/417 (0%)

Query: 71  LVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMK 130
           LV  +++R  +    A  FF      P +AH   +++  + +  R R + T+  ++  M 
Sbjct: 206 LVVDVLQRFKHARKPAFRFFCWAGKRPGFAHDSRTYNFMMCVLGRTRQFETMVAMLEEMG 265

Query: 131 SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190
              L  T +TF+I  + +  A +  +AV IF  M ++G +  ++  N +LD L   K  +
Sbjct: 266 EKGL-LTMETFSIAIKAFAEAKQRKKAVGIFDLMKKYGFKVGVDVINFLLDSLSTAKLGK 324

Query: 191 KAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250
           +A  +F+  + +F   + +Y ++ +GWC +K   +A  V  EM+DRG NP++  +N++L+
Sbjct: 325 EAQAVFEKLKDRFTPSLQTYTILLSGWCRLKNLLEAGRVWNEMIDRGFNPDVVAHNVMLE 384

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
           G  +  +  +A + F  MK +    +V +YT ++  F     +  A   FD MV+ G  P
Sbjct: 385 GLLKCKKKSDAIKLFEIMKAKGPSPNVRSYTIMIQDFCKQKLMGEAIEYFDVMVDRGCQP 444

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
             A Y  +I    ++  ++    + +EM  +G  P+  TYN +I+ +      + A+   
Sbjct: 445 DAALYTCLITGFGRQKKMDMVYSLLKEMRERGCPPDGRTYNALIKLMTSQHMPDDAVRIY 504

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
            +M     +P + TYN++++ +      E G E++++M    C P+ ++Y + I  +  +
Sbjct: 505 KKMIQSGIKPTIHTYNMIMKSYFVTKNYEMGHEIWDEMHQKGCCPDDNSYIVYIGGLIRQ 564

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
            +S +   A K L EM+++G    K  +N+  + +   GN  + +E+ R  +  G+ 
Sbjct: 565 DRSGE---ACKYLEEMLEKGMKAPKLDYNKFASDISKTGNAVILEELARKMNFVGKF 618



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 91/205 (44%), Gaps = 10/205 (4%)

Query: 289 VVGEIKRARN-VFDGMVNGGVLPSVA----TYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           V+   K AR   F      G  P  A    TYN M+ VL +    E  + + EEM  KG 
Sbjct: 210 VLQRFKHARKPAFRFFCWAGKRPGFAHDSRTYNFMMCVLGRTRQFETMVAMLEEMGEKGL 269

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
           +    T+++ I+      + ++A+     MK    +  V   N L+     A   +    
Sbjct: 270 L-TMETFSIAIKAFAEAKQRKKAVGIFDLMKKYGFKVGVDVINFLLDSLSTAKLGKEAQA 328

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           +FEK+      P+L TY IL+S  + R K  +LL AG++  EM+DRGF P     N +L 
Sbjct: 329 VFEKLKDRFT-PSLQTYTILLSG-WCRLK--NLLEAGRVWNEMIDRGFNPDVVAHNVMLE 384

Query: 464 GLLLIGNQGLAKEILRLQSRCGRLP 488
           GLL    +  A ++  +    G  P
Sbjct: 385 GLLKCKKKSDAIKLFEIMKAKGPSP 409


>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
 gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
          Length = 969

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/412 (28%), Positives = 192/412 (46%), Gaps = 30/412 (7%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII------AERYVSAGKAD 155
           +PS F+  +      RDY   + L++RM      P    + I        E   S     
Sbjct: 343 NPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSICSGEELPSPDLLA 402

Query: 156 RAVKIFLSMHEHGCRQSLNSFNT--ILDLLCKEKKVEKAYNLFKV-FRGKFKADVISYNV 212
            A K++  M    C   LN  NT      LC   K +KA+ + K+  R  F  D  +Y+ 
Sbjct: 403 LAEKVYEEMLASSC--VLNKVNTANFARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSK 460

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           +    C   +  KA  + +EM   G+ P++ TY I++  + + G IE+A  +F EM+   
Sbjct: 461 VITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVG 520

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
           C   VVTYT ++H +    ++ +A ++F  MV+ G  P+  TY+A++  LCK    + A 
Sbjct: 521 CSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKAC 580

Query: 333 LVFEEMVG----------------KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
            V+ +M+G                    PN  TY  +I GLC   ++  A E +  M  +
Sbjct: 581 EVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSN 640

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
            CEPN   Y+ LI  FC  G+++   E+F +M     LP + TY  LI +MF  ++ D  
Sbjct: 641 GCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLD-- 698

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            +A K+L +M++    P   T+  +++GL  IG    A ++L +  + G  P
Sbjct: 699 -LAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNP 749



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 184/394 (46%), Gaps = 24/394 (6%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           S++   I            + L   MKS+ + P   T+ I+ + +   G  ++A   F  
Sbjct: 456 STYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDE 515

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKR 222
           M   GC  S+ ++  +L    K K+V +A ++F ++       + I+Y+ + +G C    
Sbjct: 516 MESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGE 575

Query: 223 TNKALEVLKEMVDRGLN----------------PNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           + KA EV  +M+    N                PN+ TY  ++ G  +A ++ +A     
Sbjct: 576 SQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLD 635

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
            M    CE + + Y  ++ GF  VG++  A+ VF  M   G LP+V TY ++I  + K  
Sbjct: 636 VMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDR 695

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            ++ AI V  +M+     PN  TY  +I GLC  GE ++AL+ +  M+   C PNV TY 
Sbjct: 696 RLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYT 755

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            LI     +G+++  L+LF +M +  C PN  TY +LI+        D+   A  LL EM
Sbjct: 756 SLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLLDE---AHSLLSEM 812

Query: 447 VDRGFMPRKFT-FNRVLNGLL--LIGNQGLAKEI 477
             + + P+    +  V+ G     I + GL +E+
Sbjct: 813 -KQTYWPKYVQGYCSVVQGFSKKFIASLGLLEEL 845



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 103/422 (24%), Positives = 182/422 (43%), Gaps = 58/422 (13%)

Query: 102 SPSSFDHAIDLAARLRDYRT--VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           SPS   +   L A L+  +      + HRM      P   T++ + +    AG++ +A +
Sbjct: 522 SPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKACE 581

Query: 160 IFLSM----------------HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK- 202
           ++  M                H      ++ ++  ++D LCK  KV  A  L  V     
Sbjct: 582 VYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNG 641

Query: 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262
            + + I Y+ + +G+C V + + A EV   M   G  P + TY  ++   F+  +++ A 
Sbjct: 642 CEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAI 701

Query: 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322
           +   +M +  C  +VVTYT ++ G   +GE ++A  +   M   G  P+V TY ++I  L
Sbjct: 702 KVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGL 761

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
            K   V+ ++ +F +M+ +G  PN  TY V+I   C  G ++ A   +  MK       V
Sbjct: 762 GKSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYV 821

Query: 383 Q---------------------------------TYNILIRYFCDAGEIERGLELFEKM- 408
           Q                                  Y +LI  F  AG +E+ LEL ++M 
Sbjct: 822 QGYCSVVQGFSKKFIASLGLLEELESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMM 881

Query: 409 --GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
              S + + + DTY  LI ++ +   +  L  A +L  E+  +G +P    F  ++ GL+
Sbjct: 882 EVSSSLNITSKDTYTSLIQALCL---ASQLEKAFELYSEITRKGVVPELSAFICLIKGLI 938

Query: 467 LI 468
            +
Sbjct: 939 KV 940



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 95/391 (24%), Positives = 158/391 (40%), Gaps = 46/391 (11%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           R+K     P+  T+  + +   +AG+ D   ++   M E G      +       LCKE 
Sbjct: 197 RLKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSELGFCTDKFTVGCFAQALCKEG 256

Query: 188 KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           +   A  L  + R  FK D +    + +G       ++A+  L  M      PN+ TY  
Sbjct: 257 RWSDA--LVMIEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRT 314

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           +L G+ +  Q+    R    M    C  +   + ++VH +    +   A  + + M   G
Sbjct: 315 LLAGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCG 374

Query: 308 VLPSVATYNAMIQVLCKKDSVENAIL------VFEEMVG--------------------- 340
             P    YN  I  +C  + + +  L      V+EEM+                      
Sbjct: 375 CPPGYVVYNIFIGSICSGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMG 434

Query: 341 --------------KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
                         KG++P+++TY+ VI  LC   ++E+A      MK     P+V TY 
Sbjct: 435 KFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYT 494

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
           ILI  FC  G IE+    F++M S  C P++ TY  L+ +     K+  +  A  +   M
Sbjct: 495 ILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYL---KTKQVPQASDIFHRM 551

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
           VD G  P   T++ +++GL   G    A E+
Sbjct: 552 VDAGCAPNTITYSALVDGLCKAGESQKACEV 582



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 156/330 (47%), Gaps = 9/330 (2%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M S    P    +  + + +   GK D A ++F  M + G   +++++ +++D + 
Sbjct: 633 LLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMF 692

Query: 185 KEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K+++++ A   L ++       +V++Y  + +G C +    KAL++L  M  RG NPN+ 
Sbjct: 693 KDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVV 752

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY  ++ G  ++G+++ + + F +M  + C  + VTY  +++     G +  A ++   M
Sbjct: 753 TYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEM 812

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
                   V  Y +++Q   KK      +L  EE+   G +  +  Y ++I      G +
Sbjct: 813 KQTYWPKYVQGYCSVVQGFSKKFIASLGLL--EELESHGMVSIAPVYGLLIDSFSKAGRL 870

Query: 364 ERALEFVGRMKDDECEPNV---QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
           E+ALE    M +     N+    TY  LI+  C A ++E+  EL+ ++     +P L  +
Sbjct: 871 EKALELHKEMMEVSSSLNITSKDTYTSLIQALCLASQLEKAFELYSEITRKGVVPELSAF 930

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRG 450
             LI  +    K ++ L   +L   M D G
Sbjct: 931 ICLIKGLIKVNKWNEAL---QLCYSMCDEG 957



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/292 (18%), Positives = 135/292 (46%), Gaps = 11/292 (3%)

Query: 56  LTQTLHCPSLHWTPQLVDQIIK-RLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAA 114
           +++  + P++H    L+D + K R  + A+K L      S  P       ++   ID   
Sbjct: 672 MSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVV----TYTAMIDGLC 727

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           R+ + +    L+  M+     P   T+  + +    +GK D ++++F  M   GC  +  
Sbjct: 728 RIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYV 787

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVIS-YNVIANGWCLVKRTNKALEVLKEM 233
           ++  +++  C    +++A++L    +  +    +  Y  +  G+   K+   +L +L+E+
Sbjct: 788 TYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGF--SKKFIASLGLLEEL 845

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV---TYTTIVHGFGVV 290
              G+      Y +++  + +AG++E+A     EM +    +++    TYT+++    + 
Sbjct: 846 ESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMMEVSSSLNITSKDTYTSLIQALCLA 905

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
            ++++A  ++  +   GV+P ++ +  +I+ L K +    A+ +   M  +G
Sbjct: 906 SQLEKAFELYSEITRKGVVPELSAFICLIKGLIKVNKWNEALQLCYSMCDEG 957



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 125/286 (43%), Gaps = 10/286 (3%)

Query: 95  YHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKA 154
           Y PT  H+ +S    ID   + R       ++ +M   S  P   T+  + +     G+ 
Sbjct: 677 YLPT-VHTYTSL---IDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGEC 732

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVI 213
            +A+K+   M + GC  ++ ++ +++D L K  KV+ +  LF ++       + ++Y V+
Sbjct: 733 QKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVL 792

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
            N  C     ++A  +L EM        +  Y  V++G+ +  +   +     E++    
Sbjct: 793 INHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGFSK--KFIASLGLLEELESHGM 850

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV---LPSVATYNAMIQVLCKKDSVEN 330
                 Y  ++  F   G +++A  +   M+       + S  TY ++IQ LC    +E 
Sbjct: 851 VSIAPVYGLLIDSFSKAGRLEKALELHKEMMEVSSSLNITSKDTYTSLIQALCLASQLEK 910

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
           A  ++ E+  KG +P  + +  +I+GL    +   AL+    M D+
Sbjct: 911 AFELYSEITRKGVVPELSAFICLIKGLIKVNKWNEALQLCYSMCDE 956



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 113/284 (39%), Gaps = 12/284 (4%)

Query: 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
           NVI    C      KALE L  + D G  P+  TYN +++    AGQ++  +R   EM +
Sbjct: 176 NVIVRKCCRHGAWAKALEELGRLKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSE 235

Query: 271 RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
                D  T           G    A  + +                MI  L +    + 
Sbjct: 236 LGFCTDKFTVGCFAQALCKEGRWSDALVMIE---REDFKLDTVLCTQMISGLMEASLFDE 292

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           AI     M     +PN  TY  ++ G     ++      +  M ++ C PN   +N L+ 
Sbjct: 293 AISFLHRMRCNSCIPNVVTYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNSLVH 352

Query: 391 YFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK--SDDLL-VAGKLLIEMV 447
            +C+A +     +L  +M    C P    YNI I S+   ++  S DLL +A K+  EM+
Sbjct: 353 SYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSICSGEELPSPDLLALAEKVYEEML 412

Query: 448 DRGFMPRKF---TFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
               +  K     F R L G+   G    A +I++L  R G +P
Sbjct: 413 ASSCVLNKVNTANFARCLCGM---GKFDKAFQIIKLMMRKGFVP 453



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 1/102 (0%)

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
           A YNA+ +VL   D       +  E+            NV++R  C  G   +ALE +GR
Sbjct: 138 ACYNALAEVLHFDDRARTTERLLREIGEDDREVLGRLLNVIVRKCCRHGAWAKALEELGR 197

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS-GVC 413
           +KD    P+  TYN L++    AG+++ G  + ++M   G C
Sbjct: 198 LKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSELGFC 239



 Score = 42.0 bits (97), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 24/119 (20%), Positives = 61/119 (51%), Gaps = 4/119 (3%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS---FNTILD 181
           L+  ++S  +      + ++ + +  AG+ ++A+++   M E     ++ S   + +++ 
Sbjct: 841 LLEELESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMMEVSSSLNITSKDTYTSLIQ 900

Query: 182 LLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
            LC   ++EKA+ L+ ++ R     ++ ++  +  G   V + N+AL++   M D G+N
Sbjct: 901 ALCLASQLEKAFELYSEITRKGVVPELSAFICLIKGLIKVNKWNEALQLCYSMCDEGVN 959


>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
          Length = 578

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 106/369 (28%), Positives = 184/369 (49%), Gaps = 7/369 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFL-- 162
           +F+  I    R+   R    +   +K+  L P+  T+  + + Y   G A     + +  
Sbjct: 193 TFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLL 252

Query: 163 -SMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLV 220
             M E G   +  +F  +++  CK      A  +F+  + +   A V++YN + +G C  
Sbjct: 253 KEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSE 312

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
            +  + +++++EM D GL+PN  T+  VLKG+ + G + +A  +   M +R  E DVV Y
Sbjct: 313 GKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIY 372

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
           T ++ G+  +G+++ A  V + M   G+ P+V TYN +I    +     +A  + +EM  
Sbjct: 373 TILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKE 432

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           KG   +  TYNV+I  LC  GE+ +A++ +  M +   EPN  TYN +I+ FCD G I+ 
Sbjct: 433 KGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKS 492

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
             E+  +M       N+ TYN+ I       K D+   A  LL EM+D+  +P   T+  
Sbjct: 493 AYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDE---ANDLLNEMLDKCLVPNGITYET 549

Query: 461 VLNGLLLIG 469
           +  G++  G
Sbjct: 550 IKEGMMEKG 558



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 152/313 (48%), Gaps = 1/313 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M    + PT  TF ++   Y        AV++F  M + G   S+ ++N+++  LC
Sbjct: 251 LLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLC 310

Query: 185 KEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            E KVE+   L +         + I++  +  G+C       A + +  M +R + P++ 
Sbjct: 311 SEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVV 370

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            Y I++ GY R G++E+A      M K+    +V TY  ++ GF   G+ + A  + D M
Sbjct: 371 IYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEM 430

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G+   V TYN +I  LC K  V  A+ + +EM   G  PN  TYN +I+G C  G +
Sbjct: 431 KEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNI 490

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A E   RM+      NV TYN+ I+YFC  G+++   +L  +M     +PN  TY  +
Sbjct: 491 KSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETI 550

Query: 424 ISSMFVRKKSDDL 436
              M  +  + D+
Sbjct: 551 KEGMMEKGYTPDI 563



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 156/326 (47%), Gaps = 7/326 (2%)

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALE 228
           R S +S N +L  L   K+V+ A   F+   R +   D+ ++N + +G C + +  KA +
Sbjct: 153 RPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGD 212

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFR---AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
           V K++   GL P++ TYN ++ GY +   AG +        EM +       VT+  +++
Sbjct: 213 VAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLIN 272

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
           G+        A  VF+ M   G+  SV TYN++I  LC +  VE  + + EEM   G  P
Sbjct: 273 GYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSP 332

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           N  T+  V++G C  G M  A +++  M +   EP+V  Y ILI  +   G++E  + + 
Sbjct: 333 NEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVK 392

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           E M      PN+ TYN LI+      +S D   A  LL EM ++G      T+N ++  L
Sbjct: 393 EAMAKKGISPNVTTYNCLITGF---SRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGAL 449

Query: 466 LLIGNQGLAKEILRLQSRCGRLPRQF 491
              G    A ++L   S  G  P   
Sbjct: 450 CCKGEVRKAVKLLDEMSEVGLEPNHL 475



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 165/353 (46%), Gaps = 7/353 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P+  +   +    V A + D A K F S         + +FNT++  LC+  ++ KA ++
Sbjct: 154 PSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDV 213

Query: 196 FKVFRG-KFKADVISYNVIANGWCLVKRTNKALEV---LKEMVDRGLNPNLTTYNIVLKG 251
            K  +       V +YN + +G+C          V   LKEMV+ G++P   T+ +++ G
Sbjct: 214 AKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLING 273

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
           Y +      A R F EMK++     VVTY +++ G    G+++    + + M + G+ P+
Sbjct: 274 YCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPN 333

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
             T+  +++  CKK  + +A    + M  +   P+   Y ++I G    G+ME A+    
Sbjct: 334 EITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKE 393

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
            M      PNV TYN LI  F  +G+      L ++M       ++ TYN+LI ++  + 
Sbjct: 394 AMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCK- 452

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484
              ++  A KLL EM + G  P   T+N ++ G    GN   A EI     +C
Sbjct: 453 --GEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKC 503


>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12775, mitochondrial-like [Glycine max]
          Length = 750

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 178/344 (51%), Gaps = 6/344 (1%)

Query: 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK 197
           Q ++  +       G+     ++   +  H  +  +  +NTI+  LCK K +  A +L+ 
Sbjct: 168 QVSYRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYS 227

Query: 198 --VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
             + +G    +V++YN +  G+C++    +A  +L EM  + +NP++ T+N ++    + 
Sbjct: 228 EMIVKG-ISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKE 286

Query: 256 GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
           G+++ A      M K   + DVVTY +++ G+  + ++K A+ VF  M   GV P+V TY
Sbjct: 287 GKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTY 346

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
             MI  LCK+  V+ A+ +FEEM  K  +P+  TY  +I GLC    +ERA+    +MK+
Sbjct: 347 TTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKE 406

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
              +P+V +Y IL+   C  G +E   E F+++       N+ TYN++I+ +    K+D 
Sbjct: 407 QGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLC---KADL 463

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
              A  L  +M  +G MP   TF  ++  L        A++ILR
Sbjct: 464 FGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILR 507



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 111/398 (27%), Positives = 189/398 (47%), Gaps = 27/398 (6%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   ID   + +      +L   MK  ++ P   T+  + +        +RA+ +   M
Sbjct: 345 TYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKM 404

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
            E G +  + S+  +LD LCK  ++E A   F+    K +  +V +YNV+ NG C     
Sbjct: 405 KEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLF 464

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM------KKRKCEI-- 275
            +A+++  +M  +G  P+  T+  ++   F   + ++A +   EM      + RK  +  
Sbjct: 465 GEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILREMIARGLQEARKVRLKE 524

Query: 276 ---------------DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
                          DVVTY T++ G+ +V E+K A+ VF  M   GV P+V  Y  MI 
Sbjct: 525 AKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMID 584

Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
            LCKK +V+ A+ +FEEM  K   PN  TY  +I  LC    +ERA+  +  MK+   +P
Sbjct: 585 GLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQP 644

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAG 440
           +V +Y IL+   C +G +E   E+F+++       N+  Y  +I+ +      D+ L   
Sbjct: 645 DVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEAL--- 701

Query: 441 KLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
            L  +M D+G MP   TF+ ++  L        A++IL
Sbjct: 702 DLQXKMEDKGCMPDAVTFDIIIWALFEKDENDKAEKIL 739



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/399 (25%), Positives = 181/399 (45%), Gaps = 27/399 (6%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  ID   +    +    ++  M    + P   T+  + + Y    K   A  +F SM
Sbjct: 275 TFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSM 334

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
            + G   ++ ++ T++D LCKEK V++A +LF+  + K    D+++Y  + +G C     
Sbjct: 335 AQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHL 394

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A+ + K+M ++G+ P++ +Y I+L    + G++E A  FF  +  +   ++V TY  +
Sbjct: 395 ERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVM 454

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++G         A ++   M   G +P   T+  +I  L +KD  + A  +  EM+ +G 
Sbjct: 455 INGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILREMIARGL 514

Query: 344 M-----------------------PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
                                   P+  TY  ++ G     E++ A      M      P
Sbjct: 515 QEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTP 574

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAG 440
           NVQ Y I+I   C    ++  + LFE+M      PN+ TY  LI ++    K+  L  A 
Sbjct: 575 NVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALC---KNHHLERAI 631

Query: 441 KLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
            LL EM + G  P  +++  +L+GL   G    AKEI +
Sbjct: 632 ALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQ 670



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 157/356 (44%), Gaps = 27/356 (7%)

Query: 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
           + P   T+  +   +   G    A  +   M        + +FNT++D L KE K++ A 
Sbjct: 234 ISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAK 293

Query: 194 NLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
            +  V  +   K DV++YN + +G+  + +   A  V   M   G+ PN+ TY  ++ G 
Sbjct: 294 IVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGL 353

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
            +   ++EA   F EMK +    D+VTYT+++ G      ++RA  +   M   G+ P V
Sbjct: 354 CKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDV 413

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            +Y  ++  LCK   +ENA   F+ ++ KGY  N  TYNV+I GLC       A++   +
Sbjct: 414 YSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSK 473

Query: 373 MKDDECEPNVQTYNILIRYFCDAGE-----------IERGLELFEK------------MG 409
           M+   C P+  T+  +I    +  E           I RGL+   K            M 
Sbjct: 474 MEGKGCMPDAITFKTIICALFEKDENDKAEKILREMIARGLQEARKVRLKEAKIVLAVMT 533

Query: 410 SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
                P++ TY  L+   F+    ++L  A  +   M   G  P    +  +++GL
Sbjct: 534 KACIKPDVVTYGTLMDGYFL---VNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGL 586



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 136/291 (46%), Gaps = 4/291 (1%)

Query: 176 FNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMV 234
           FN IL  L   K      +LFK F       D+ + N++ N +C +     A  VL  ++
Sbjct: 66  FNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMNCFCHLTHITFAFSVLANIL 125

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
            RG +PN  T N ++KG    G+I++A  F  ++  +  +++ V+Y T+++G    GE K
Sbjct: 126 KRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLINGLCKTGETK 185

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
               +   +    V P V  YN +I  LCK   + +A  ++ EM+ KG  PN  TYN ++
Sbjct: 186 AVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALV 245

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
            G C  G ++ A   +  MK     P+V T+N LI      G+++    +   M      
Sbjct: 246 YGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIK 305

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           P++ TYN LI   F   K  +   A  +   M   G  P   T+  +++GL
Sbjct: 306 PDVVTYNSLIDGYFFLNKVKN---AKYVFYSMAQSGVTPNVRTYTTMIDGL 353



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 172/375 (45%), Gaps = 4/375 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           F++ +      + Y TV +L  + +S    P   T  I+   +        A  +  ++ 
Sbjct: 66  FNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMNCFCHLTHITFAFSVLANIL 125

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKA-YNLFKVFRGKFKADVISYNVIANGWCLVKRTN 224
           + G   +  + NT++  LC   +++KA Y   +V    F+ + +SY  + NG C    T 
Sbjct: 126 KRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLINGLCKTGETK 185

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
               +L+++    + P++  YN ++    +   + +A   + EM  +    +VVTY  +V
Sbjct: 186 AVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALV 245

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
           +GF ++G +K A ++ + M    + P V T+N +I  L K+  ++ A +V   M+     
Sbjct: 246 YGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIK 305

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           P+  TYN +I G     +++ A      M      PNV+TY  +I   C    ++  + L
Sbjct: 306 PDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSL 365

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           FE+M     +P++ TY  LI  +    K+  L  A  L  +M ++G  P  +++  +L+ 
Sbjct: 366 FEEMKYKNMIPDIVTYTSLIDGLC---KNHHLERAIALCKKMKEQGIQPDVYSYTILLDA 422

Query: 465 LLLIGNQGLAKEILR 479
           L   G    AKE  +
Sbjct: 423 LCKGGRLENAKEFFQ 437



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 77/163 (47%), Gaps = 1/163 (0%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID   + +      +L   MK  ++ P   T+  + +        +RA+ +   M EHG 
Sbjct: 583 IDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGI 642

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALE 228
           +  + S+  +LD LCK  ++E A  +F+    K +  +V  Y  + N  C     ++AL+
Sbjct: 643 QPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALD 702

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
           +  +M D+G  P+  T++I++   F   + ++A +   EM  R
Sbjct: 703 LQXKMEDKGCMPDAVTFDIIIWALFEKDENDKAEKILXEMIAR 745



 Score = 41.6 bits (96), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 30/137 (21%), Positives = 64/137 (46%), Gaps = 5/137 (3%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   ID   +         L+  MK   + P   ++ I+ +    +G+ + A +IF  +
Sbjct: 613 TYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRL 672

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKR- 222
              G   ++  +  +++ LCK    ++A +L      K    D +++++I   W L ++ 
Sbjct: 673 LVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKGCMPDAVTFDIII--WALFEKD 730

Query: 223 -TNKALEVLKEMVDRGL 238
             +KA ++L EM+ RGL
Sbjct: 731 ENDKAEKILXEMIARGL 747


>gi|15228788|ref|NP_191813.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122214682|sp|Q3EAF8.1|PP294_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g62540, mitochondrial; Flags: Precursor
 gi|332646841|gb|AEE80362.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 599

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 104/408 (25%), Positives = 211/408 (51%), Gaps = 6/408 (1%)

Query: 54  RTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLA 113
           R +   L    L  +  L+ ++++R  +    A  FF   +    +AH+  +++  + + 
Sbjct: 146 RNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHASRTYNSMMSIL 205

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
           A+ R + T+ +++  M +  L  T +TF I  + + +A +  +AV IF  M ++  +  +
Sbjct: 206 AKTRQFETMVSVLEEMGTKGL-LTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGV 264

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
            + N +LD L + K  ++A  LF   + +F  ++++Y V+ NGWC V+   +A  +  +M
Sbjct: 265 ETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDM 324

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           +D GL P++  +N++L+G  R+ +  +A + F  MK +    +V +YT ++  F     +
Sbjct: 325 IDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSM 384

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           + A   FD MV+ G+ P  A Y  +I     +  ++    + +EM  KG+ P+  TYN +
Sbjct: 385 ETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNAL 444

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGV 412
           I+ + +    E       +M  +E EP++ T+N++++ +  A   E G  ++++M   G+
Sbjct: 445 IKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGI 504

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
           C P+ ++Y +LI  +    KS +   A + L EM+D+G       +N+
Sbjct: 505 C-PDDNSYTVLIRGLISEGKSRE---ACRYLEEMLDKGMKTPLIDYNK 548



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 109/261 (41%), Gaps = 1/261 (0%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           R+R+      + + M    L P      ++ E  + + K   A+K+F  M   G   ++ 
Sbjct: 310 RVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVR 369

Query: 175 SFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           S+  ++   CK+  +E A   F  +     + D   Y  +  G+   K+ +   E+LKEM
Sbjct: 370 SYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEM 429

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
            ++G  P+  TYN ++K        E   R + +M + + E  + T+  I+  + V    
Sbjct: 430 QEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNY 489

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           +  R V+D M+  G+ P   +Y  +I+ L  +     A    EEM+ KG       YN  
Sbjct: 490 EMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNKF 549

Query: 354 IRGLCHTGEMERALEFVGRMK 374
                  G+ E   E   R K
Sbjct: 550 AADFHRGGQPEIFEELAQRAK 570



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 5/160 (3%)

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G   +  TYN+M+ +L K    E  + V EEM  KG +    T+ + ++      E ++A
Sbjct: 190 GFAHASRTYNSMMSILAKTRQFETMVSVLEEMGTKGLL-TMETFTIAMKAFAAAKERKKA 248

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
           +     MK  + +  V+T N L+     A   +    LF+K+      PN+ TY +L++ 
Sbjct: 249 VGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFT-PNMMTYTVLLNG 307

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
            + R +  +L+ A ++  +M+D G  P     N +L GLL
Sbjct: 308 -WCRVR--NLIEAARIWNDMIDHGLKPDIVAHNVMLEGLL 344


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/429 (27%), Positives = 203/429 (47%), Gaps = 12/429 (2%)

Query: 66  HWTPQLVDQIIKRLWNHAL--KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVW 123
           + T  + D ++K     +L  KAL   ++   H      P    +   L A +R  R + 
Sbjct: 131 YSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAH---GFMPGVLSYNAVLDATIRSKRNIS 187

Query: 124 ---TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180
               +   M    + P   T+ I+   +  AG  D A+ +F  M   GC  ++ ++NT++
Sbjct: 188 FAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLI 247

Query: 181 DLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
           D  CK +K++  + L +    K  + ++ISYNV+ NG C   R  +   VL EM  RG +
Sbjct: 248 DGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYS 307

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
            +  TYN ++KGY + G   +A     EM +      V+TYT+++H     G + RA   
Sbjct: 308 LDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEF 367

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
            D M   G+ P+  TY  ++    +K  +  A  V  EM   G+ P+  TYN +I G C 
Sbjct: 368 LDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCV 427

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419
           TG+ME A+  +  MK+    P+V +Y+ ++  FC + +++  L +  +M      P+  T
Sbjct: 428 TGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTIT 487

Query: 420 YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           Y+ LI     ++++ +   A  L  EM+  G  P +FT+  ++N   + G+   A ++  
Sbjct: 488 YSSLIQGFCEQRRTKE---ACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHN 544

Query: 480 LQSRCGRLP 488
                G LP
Sbjct: 545 EMVEKGVLP 553



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 114/439 (25%), Positives = 209/439 (47%), Gaps = 9/439 (2%)

Query: 59  TLHCPS---LHWTPQ-LVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAA 114
           TLH  +   L+ T Q L + +  +  +    +L F ++   +     + S FD  +   +
Sbjct: 86  TLHILTKFKLYKTAQILAEDVAAKTLDDEYASLVFKSLQETYDLCYSTSSVFDLVVKSYS 145

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTF-AIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
           RL       ++VH  ++    P   ++ A++     S      A  +F  M E     ++
Sbjct: 146 RLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNV 205

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKE 232
            ++N ++   C    ++ A  LF     K    +V++YN + +G+C +++ +   ++L+ 
Sbjct: 206 FTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRS 265

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M  +GL PNL +YN+V+ G  R G+++E      EM +R   +D VTY T++ G+   G 
Sbjct: 266 MALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGN 325

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
             +A  +   M+  G+ PSV TY ++I  +CK  ++  A+   ++M  +G  PN  TY  
Sbjct: 326 FHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTT 385

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           ++ G    G M  A   +  M D+   P+V TYN LI   C  G++E  + + E M    
Sbjct: 386 LVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKG 445

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
             P++ +Y+ ++S  F R  S D+  A ++  EMV++G  P   T++ ++ G        
Sbjct: 446 LSPDVVSYSTVLSG-FCR--SYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTK 502

Query: 473 LAKEILRLQSRCGRLPRQF 491
            A ++     R G  P +F
Sbjct: 503 EACDLYEEMLRVGLPPDEF 521



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 183/375 (48%), Gaps = 39/375 (10%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           TL  +M++    P   T+  + + Y    K D   K+  SM   G   +L S+N +++ L
Sbjct: 226 TLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGL 285

Query: 184 CKEKKV-EKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           C+E ++ E ++ L ++ R  +  D ++YN +  G+C     ++AL +  EM+  GL P++
Sbjct: 286 CREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSV 345

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TY  ++    +AG +  A  F  +M+ R    +  TYTT+V GF   G +  A  V   
Sbjct: 346 ITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLRE 405

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M + G  PSV TYNA+I   C    +E+AI V E+M  KG  P+  +Y+ V+ G C + +
Sbjct: 406 MNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYD 465

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDA--------------------------- 395
           ++ AL     M +   +P+  TY+ LI+ FC+                            
Sbjct: 466 VDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTA 525

Query: 396 --------GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
                   G++E+ L+L  +M     LP++ TY++LI+ +  + ++ +   A +LL+++ 
Sbjct: 526 LINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTRE---AKRLLLKLF 582

Query: 448 DRGFMPRKFTFNRVL 462
               +P   T++ ++
Sbjct: 583 YEESVPSDVTYHTLI 597



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 174/356 (48%), Gaps = 13/356 (3%)

Query: 72  VDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKS 131
           +D   K L + ALK L   N++SY+           + +    R+++   V T ++R + 
Sbjct: 256 IDDGFKLLRSMALKGLEP-NLISYNVVI--------NGLCREGRMKEVSFVLTEMNR-RG 305

Query: 132 LSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEK 191
            SL   + T+  + + Y   G   +A+ +   M  HG   S+ ++ +++  +CK   + +
Sbjct: 306 YSLD--EVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNR 363

Query: 192 AYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250
           A       R +    +  +Y  + +G+      N+A  VL+EM D G +P++ TYN ++ 
Sbjct: 364 AMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALIN 423

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
           G+   G++E+A     +MK++    DVV+Y+T++ GF    ++  A  V   MV  G+ P
Sbjct: 424 GHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKP 483

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
              TY+++IQ  C++   + A  ++EEM+  G  P+  TY  +I   C  G++E+AL+  
Sbjct: 484 DTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLH 543

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
             M +    P+V TY++LI              L  K+     +P+  TY+ LI +
Sbjct: 544 NEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIEN 599



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 153/297 (51%), Gaps = 16/297 (5%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           +M+   L P ++T+  + + +   G  + A ++   M+++G   S+ ++N +++  C   
Sbjct: 370 QMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTG 429

Query: 188 KVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
           K+E A  + +  + K    DV+SY+ + +G+C     ++AL V +EMV++G+ P+  TY+
Sbjct: 430 KMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYS 489

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
            +++G+    + +EA   + EM +     D  TYT +++ + + G++++A  + + MV  
Sbjct: 490 SLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEK 549

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI------------ 354
           GVLP V TY+ +I  L K+     A  +  ++  +  +P+  TY+ +I            
Sbjct: 550 GVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVV 609

Query: 355 ---RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
              +G C  G M  A +    M     +P+   YNI+I   C AG+I +   L+++M
Sbjct: 610 SLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEM 666



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/372 (19%), Positives = 149/372 (40%), Gaps = 56/372 (15%)

Query: 62  CPSLHWTPQLVDQIIKRLW-NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYR 120
           CP+      LVD   ++ + N A + L   N   + P    S  +++  I+         
Sbjct: 377 CPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSP----SVVTYNALINGHCVTGKME 432

Query: 121 TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180
               ++  MK   L P   +++ +   +  +   D A+++   M E G +    ++++++
Sbjct: 433 DAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLI 492

Query: 181 DLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
              C++++ ++A +L++ + R     D  +Y  + N +C+     KAL++  EMV++G+ 
Sbjct: 493 QGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVL 552

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLE-------------------------------- 267
           P++ TY++++ G  +  +  EA R  L+                                
Sbjct: 553 PDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLI 612

Query: 268 ----MKKRKCEIDVV--------------TYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
               MK    E D V               Y  ++HG    G+I++A  ++  MV  G L
Sbjct: 613 KGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFL 672

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
               T  A+++ L K+  V     V   ++    +  +    V++      G M+  L+ 
Sbjct: 673 LHTVTVIALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEINHREGNMDVVLDV 732

Query: 370 VGRMKDDECEPN 381
           +  M  D   PN
Sbjct: 733 LAEMAKDGFLPN 744



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 111/249 (44%), Gaps = 16/249 (6%)

Query: 117 RDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSF 176
           R  +    L   M  + L P + T+  +   Y   G  ++A+++   M E G    + ++
Sbjct: 499 RRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTY 558

Query: 177 NTILDLLCKEKKVEKAYNLF-KVF-RGKFKADVISYNVIAN--------------GWCLV 220
           + +++ L K+ +  +A  L  K+F      +DV  + +I N              G+C+ 
Sbjct: 559 SVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMK 618

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
               +A +V + M+ +   P+ T YNI++ G+ RAG I +A+  + EM K    +  VT 
Sbjct: 619 GMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTV 678

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
             +V      G++    +V   ++    L        ++++  ++ +++  + V  EM  
Sbjct: 679 IALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAK 738

Query: 341 KGYMPNSTT 349
            G++PN  +
Sbjct: 739 DGFLPNGIS 747


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 104/356 (29%), Positives = 178/356 (50%), Gaps = 6/356 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG-CRQSLNSFNTILDLLCKEKKVEKAYN 194
           P   T+  +   + S G+   A+ I   M E G    +  ++ T++   CK  +V++A  
Sbjct: 517 PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVK 576

Query: 195 LFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
           +F   + +G+ K + + YN +  G+C   + + AL     MV+RG+   + TYN+++   
Sbjct: 577 VFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHAL 636

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
           F  G+  EA+    EM  +    DV TY  +++G    G +K+A  +F+ M   GV  +V
Sbjct: 637 FMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATV 696

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            TY A+I  L KK  V+    +F+E V +G  P+   YN +I     +G ++RA E +G 
Sbjct: 697 VTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGE 756

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           M+     P+  TYN L+R  C  G ++   +L ++M      P+L TYN LIS   ++  
Sbjct: 757 MEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGD 816

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             D L   ++  EM+++GF P   T+N ++ GL   G    A+ +++     G  P
Sbjct: 817 VKDAL---RIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITP 869



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 122/413 (29%), Positives = 199/413 (48%), Gaps = 13/413 (3%)

Query: 79  LWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLA-ARLRDYRTVWTLVHRMKSLSLGPT 137
           L+   L A    + L+  P    +PSS  + +  A A +R + T   L  RMKSLSL  +
Sbjct: 397 LFKSVLSADKALSPLAVLPHLDGAPSSLPNLLLTASAAVRPHATSLRLYSRMKSLSLPIS 456

Query: 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK 197
             +   +    +SA  +  A  +F  M          +FN +L  LC   K  +A  L  
Sbjct: 457 TASLHPL----LSALPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELL- 511

Query: 198 VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR-GLNPNLTTYNIVLKGYFRAG 256
             R   + + ++YN +  G+C   R   AL++++EM +R G+ PN  TY  V+ G+ + G
Sbjct: 512 --RQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVG 569

Query: 257 QIEEAWRFFLEM-KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
           +++EA + F EM  K + + + V Y  ++ G+   G++  A    D MV  GV  +VATY
Sbjct: 570 RVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATY 629

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           N ++  L        A  + EEM GKG  P+  TYN++I G C  G +++ALE    M  
Sbjct: 630 NLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSR 689

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
                 V TY  LI      G+++   +LF++       P+L  YN LI+S      S +
Sbjct: 690 RGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINS---HSTSGN 746

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           +  A +++ EM  +   P   T+N ++ GL L+G    A++++   +  G  P
Sbjct: 747 IDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQP 799



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 138/248 (55%), Gaps = 3/248 (1%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
            + LV  M    L P   T+ I+   +   G   +A++IF +M   G R ++ ++  ++ 
Sbjct: 645 AYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIY 704

Query: 182 LLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
            L K+ +V++   LF +  R   + D++ YN + N        ++A E++ EM  + + P
Sbjct: 705 ALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAP 764

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           +  TYN +++G    G+++EA +   EM +R  + D+VTY T++ G+ + G++K A  + 
Sbjct: 765 DDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIR 824

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           + M+N G  P++ TYNA+IQ LCK    ++A  + +EMV  G  P+ +TY  +I GL  T
Sbjct: 825 NEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL--T 882

Query: 361 GEMERALE 368
            E ERA++
Sbjct: 883 TEDERAID 890



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 138/297 (46%), Gaps = 4/297 (1%)

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKAD 206
           Y   GK D A+     M E G   ++ ++N ++  L  + +  +AY L +   GK    D
Sbjct: 601 YCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPD 660

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           V +YN++ NG C      KALE+ + M  RG+   + TY  ++    + GQ++E  + F 
Sbjct: 661 VFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFD 720

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           E  +R    D+V Y  +++     G I RA  +   M    + P   TYN +++ LC   
Sbjct: 721 EAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLG 780

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            V+ A  + +EM  +G  P+  TYN +I G    G+++ AL     M +    P + TYN
Sbjct: 781 RVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYN 840

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV---RKKSDDLLVAG 440
            LI+  C  G+ +    + ++M      P+  TY  LI  +     R   D+ L A 
Sbjct: 841 ALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTEDERAIDDERLAAA 897



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 9/180 (5%)

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           T+N M++ LC       A+ +  +M      PN+ TYN VI G C  G ++ AL+ +  M
Sbjct: 490 TFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMREM 545

Query: 374 KD-DECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISSMFVRK 431
           ++     PN  TY  +I  +C  G ++  +++F++M   G   P    YN LI     + 
Sbjct: 546 RERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQG 605

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           K D  L+       MV+RG      T+N +++ L + G    A E++      G  P  F
Sbjct: 606 KLDTALLYRD---RMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVF 662


>gi|297832060|ref|XP_002883912.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329752|gb|EFH60171.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/361 (31%), Positives = 178/361 (49%), Gaps = 7/361 (1%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M+S  + PT  T+  + + Y   G+ + A  I   M   G +  L ++N IL  +C E +
Sbjct: 252 MESFGIKPTIVTYNTLVQGYSLRGRIEGARMIISEMKSKGFQPDLQTYNPILSWMCNEGR 311

Query: 189 VEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
              A  + +  +G     D +SYN++  G         A     EMV +G+ P   TYN 
Sbjct: 312 ---ASEVLREMKGIGLVPDSVSYNILIRGCSNNGDLETAFAYRDEMVKQGMVPTFYTYNT 368

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ G F   +IE A     E++++   +D VTY  +++G+   G+ K+A  + D M+  G
Sbjct: 369 LIHGLFMENKIEAAEILIREIREKGIVLDSVTYNIVINGYCQHGDAKKAFALHDEMMTDG 428

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           + P+  TY ++I VLC+++    A  +FE++VGKG  P+    N ++ G C TG M+RA 
Sbjct: 429 IKPTQFTYTSLIYVLCRRNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCATGNMDRAF 488

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
             +  M     +P+  TYN L+R  C  G+ E   EL  +M      P+  +YN LIS  
Sbjct: 489 SLLKEMDRMNIDPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGY 548

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
               K  D   A  +  EM+  GF P   T+N +L GL    +  LA+E+LR     G +
Sbjct: 549 ---SKKGDTKHAFIVRDEMLSLGFNPTLLTYNALLKGLSKNQDGELAEELLREMKSEGIV 605

Query: 488 P 488
           P
Sbjct: 606 P 606



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 147/289 (50%), Gaps = 14/289 (4%)

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
            I ++ +   +C ++  ++A+E    M ++G +P   T N +L    R  +IE AW F+ 
Sbjct: 156 TILFDFMVRFYCQLRMVDEAIECFYLMKEKGFDPKTETCNHILSLLSRLNRIENAWVFYA 215

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           +M + + + +V T+  +++     G++K+A+     M + G+ P++ TYN ++Q    + 
Sbjct: 216 DMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMESFGIKPTIVTYNTLVQGYSLRG 275

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            +E A ++  EM  KG+ P+  TYN ++  +C+ G   RA E +  MK     P+  +YN
Sbjct: 276 RIEGARMIISEMKSKGFQPDLQTYNPILSWMCNEG---RASEVLREMKGIGLVPDSVSYN 332

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLI-E 445
           ILIR   + G++E      ++M     +P   TYN LI  +F+  K    + A ++LI E
Sbjct: 333 ILIRGCSNNGDLETAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENK----IEAAEILIRE 388

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC---GRLPRQF 491
           + ++G +    T+N V+NG       G AK+   L       G  P QF
Sbjct: 389 IREKGIVLDSVTYNIVINGYC---QHGDAKKAFALHDEMMTDGIKPTQF 434



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 118/222 (53%), Gaps = 1/222 (0%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           T+ I+   Y   G A +A  +   M   G + +  ++ +++ +LC+  K  +A  LF+  
Sbjct: 400 TYNIVINGYCQHGDAKKAFALHDEMMTDGIKPTQFTYTSLIYVLCRRNKTREADELFEKV 459

Query: 200 RGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
            GK  K D++  N + +G C     ++A  +LKEM    ++P+  TYN +++G    G+ 
Sbjct: 460 VGKGMKPDLVMMNTLMDGHCATGNMDRAFSLLKEMDRMNIDPDDVTYNCLMRGLCGEGKF 519

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           EEA     EMK+R  + D ++Y T++ G+   G+ K A  V D M++ G  P++ TYNA+
Sbjct: 520 EEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFIVRDEMLSLGFNPTLLTYNAL 579

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           ++ L K    E A  +  EM  +G +PN +++  VI  +  +
Sbjct: 580 LKGLSKNQDGELAEELLREMKSEGIVPNDSSFCSVIEAMSKS 621



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 141/312 (45%), Gaps = 4/312 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++  MK + L P   ++ I+     + G  + A      M + G   +  ++NT++  L 
Sbjct: 315 VLREMKGIGLVPDSVSYNILIRGCSNNGDLETAFAYRDEMVKQGMVPTFYTYNTLIHGLF 374

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            E K+E A  L +  R K    D ++YN++ NG+C      KA  +  EM+  G+ P   
Sbjct: 375 MENKIEAAEILIREIREKGIVLDSVTYNIVINGYCQHGDAKKAFALHDEMMTDGIKPTQF 434

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY  ++    R  +  EA   F ++  +  + D+V   T++ G    G + RA ++   M
Sbjct: 435 TYTSLIYVLCRRNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCATGNMDRAFSLLKEM 494

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
               + P   TYN +++ LC +   E A  +  EM  +G  P+  +YN +I G    G+ 
Sbjct: 495 DRMNIDPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDT 554

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A      M      P + TYN L++      + E   EL  +M S   +PN  ++  +
Sbjct: 555 KHAFIVRDEMLSLGFNPTLLTYNALLKGLSKNQDGELAEELLREMKSEGIVPNDSSFCSV 614

Query: 424 ISSMFVRKKSDD 435
           I +M    KSD+
Sbjct: 615 IEAM---SKSDN 623


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/432 (26%), Positives = 202/432 (46%), Gaps = 74/432 (17%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           +LV +M  +   P   TF  +        +A  AV +   M   GC+  L ++  +++ L
Sbjct: 172 SLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGL 231

Query: 184 CKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CK   ++ A +L K   +GK +  V+ YN I +  C  K  N AL +  EM ++G+ PN+
Sbjct: 232 CKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNV 291

Query: 243 TTYNIVLK-----------------------------------GYFRAGQIEEAWRFFLE 267
            TYN +++                                    + + G++ EA + + E
Sbjct: 292 VTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDE 351

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M KR  + D+ TY+++++GF +   +  A+++F+ M++    P+V TYN +I+  CK   
Sbjct: 352 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 411

Query: 328 V-----------------------------------ENAILVFEEMVGKGYMPNSTTYNV 352
           V                                   +NA +VF++MV  G +P+  TY++
Sbjct: 412 VDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSI 471

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           ++ GLC+ G++E AL     ++  + EP++ TYNI+I   C AG++E G +LF  +    
Sbjct: 472 LLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG 531

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
             PN+ TY  ++S  F RK   +   A  L  EM + G +P   T+N ++   L  G++ 
Sbjct: 532 VKPNVVTYTTMMSG-FCRKGLKE--EADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKA 588

Query: 473 LAKEILRLQSRC 484
            + E++R    C
Sbjct: 589 ASAELIREMRSC 600



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 106/378 (28%), Positives = 187/378 (49%), Gaps = 7/378 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           ++  ID     ++      L   M +  + P   T+  +     + G+   A ++   M 
Sbjct: 259 YNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 318

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTN 224
           E     ++ +F+ ++D   KE K+ +A  L+ ++ +     D+ +Y+ + NG+C+  R +
Sbjct: 319 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 378

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           +A  + + M+ +   PN+ TYN ++KG+ +A +++E    F EM +R    + VTYTT++
Sbjct: 379 EAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLI 438

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
           HGF    E   A+ VF  MV+ GVLP + TY+ ++  LC    VE A++VFE +      
Sbjct: 439 HGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKME 498

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           P+  TYN++I G+C  G++E   +    +     +PNV TY  ++  FC  G  E    L
Sbjct: 499 PDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADAL 558

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           F +M     LP+  TYN LI +     +  D   + +L+ EM    F+    T   V N 
Sbjct: 559 FREMKEEGPLPDSGTYNTLIRAHL---RDGDKAASAELIREMRSCRFVGDASTIGLVTN- 614

Query: 465 LLLIGNQGLAKEILRLQS 482
             ++ +  L K  L++ S
Sbjct: 615 --MLHDGRLDKSFLKMLS 630



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 105/404 (25%), Positives = 188/404 (46%), Gaps = 25/404 (6%)

Query: 102 SPSSFDHAI----DLAARLRDYRTVWTLVHRMKSLSLG---------------PTQKTFA 142
           +P SF H      D +    DYR +   ++R+  L L                P+   F+
Sbjct: 28  APPSFSHCSFWVRDFSGVRYDYRKIS--INRLNDLKLDDAVNLFGDMVKSRPFPSIVEFS 85

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRG 201
            +        K D  + +   M   G   +L +++ +++  C+  ++  A   L K+ + 
Sbjct: 86  KLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKL 145

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
            ++ D+++ N + NG+C   R + A+ ++ +MV+ G  P+  T+N ++ G FR  +  EA
Sbjct: 146 GYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEA 205

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
                 M  + C+ D+VTY  +V+G    G+I  A ++   M  G + P V  YN +I  
Sbjct: 206 VALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDA 265

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           LC   +V +A+ +F EM  KG  PN  TYN +IR LC+ G    A   +  M + +  PN
Sbjct: 266 LCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPN 325

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
           V T++ LI  F   G++    +L+++M      P++ TY+ LI+   +  + D+   A  
Sbjct: 326 VVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE---AKH 382

Query: 442 LLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
           +   M+ +   P   T+N ++ G           E+ R  S+ G
Sbjct: 383 MFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRG 426


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 129/480 (26%), Positives = 213/480 (44%), Gaps = 77/480 (16%)

Query: 79  LWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLA-ARLRDYRTVWTLVHRMKSLSLG-- 135
           L+   L A    + L+  P    +PSS  + +  A A +R + T   L  RMKSLSL   
Sbjct: 392 LFKSVLSADKALSPLAVLPHLDGAPSSLPNLLLTASAAVRPHATSLRLYSRMKSLSLPIS 451

Query: 136 -----------PTQKTFAIIAERY------------------VSAGKADRAVKIFLSMHE 166
                      P+   FA+ A+ +                   SAGK  RA+++   M  
Sbjct: 452 TASLHPLLSALPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMP- 510

Query: 167 HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR--GKFKADVISYNVIANGWCLVKRTN 224
              R +  ++NT++   C   +V+ A ++ +  R  G    +  +Y  + +GWC V R +
Sbjct: 511 ---RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVD 567

Query: 225 KALEVLKEM------------------------------------VDRGLNPNLTTYNIV 248
           +A++V  EM                                    V+RG+   + TYN++
Sbjct: 568 EAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLL 627

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           +   F  G+  EA+    EM  +    DV TY  +++G    G +K+A  +F+ M   GV
Sbjct: 628 VHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGV 687

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
             +V TY A+I  L KK  V+    +F+E V +G  P+   YN +I     +G ++RA E
Sbjct: 688 RATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFE 747

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
            +G M+     P+  TYN L+R  C  G ++   +L ++M      P+L TYN LIS   
Sbjct: 748 IMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYS 807

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           ++    D L   ++  EM+++GF P   T+N ++ GL   G    A+ +++     G  P
Sbjct: 808 MKGDVKDAL---RIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITP 864



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 138/248 (55%), Gaps = 3/248 (1%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
            + LV  M    L P   T+ I+   +   G   +A++IF +M   G R ++ ++  ++ 
Sbjct: 640 AYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIY 699

Query: 182 LLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
            L K+ +V++   LF +  R   + D++ YN + N        ++A E++ EM  + + P
Sbjct: 700 ALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAP 759

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           +  TYN +++G    G+++EA +   EM +R  + D+VTY T++ G+ + G++K A  + 
Sbjct: 760 DDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIR 819

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           + M+N G  P++ TYNA+IQ LCK    ++A  + +EMV  G  P+ +TY  +I GL  T
Sbjct: 820 NEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL--T 877

Query: 361 GEMERALE 368
            E ERA++
Sbjct: 878 TEDERAID 885



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 138/297 (46%), Gaps = 4/297 (1%)

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKAD 206
           Y   GK D A+     M E G   ++ ++N ++  L  + +  +AY L +   GK    D
Sbjct: 596 YCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPD 655

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           V +YN++ NG C      KALE+ + M  RG+   + TY  ++    + GQ++E  + F 
Sbjct: 656 VFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFD 715

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           E  +R    D+V Y  +++     G I RA  +   M    + P   TYN +++ LC   
Sbjct: 716 EAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLG 775

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            V+ A  + +EM  +G  P+  TYN +I G    G+++ AL     M +    P + TYN
Sbjct: 776 RVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYN 835

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV---RKKSDDLLVAG 440
            LI+  C  G+ +    + ++M      P+  TY  LI  +     R   D+ L A 
Sbjct: 836 ALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTEDERAIDDERLAAA 892



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 9/182 (4%)

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
             T+N M++ LC       A+ +  +M      PN+ TYN VI G C  G ++ AL+ + 
Sbjct: 483 TTTFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMR 538

Query: 372 RMKD-DECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISSMFV 429
            M++     PN  TY  +I  +C  G ++  +++F++M   G   P    YN LI     
Sbjct: 539 EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 598

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPR 489
           + K D  L+       MV+RG      T+N +++ L + G    A E++      G  P 
Sbjct: 599 QGKLDTALLYRD---RMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPD 655

Query: 490 QF 491
            F
Sbjct: 656 VF 657


>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial-like
           [Glycine max]
          Length = 555

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 100/315 (31%), Positives = 170/315 (53%), Gaps = 5/315 (1%)

Query: 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISY 210
           G+   A+++   M E   R +L +++T++D LCK++ +  A  LF +   +    DV++Y
Sbjct: 174 GQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAY 233

Query: 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
           N + +G C V +  +A  +L  MV   +NP+  T+NI++    + G+I EA   F  M K
Sbjct: 234 NSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMK 293

Query: 271 RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
           R  + D+VTY  ++ GF +   +  AR +F+ MV  G+ P V  YN +I   CK D V+ 
Sbjct: 294 RGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDE 353

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           A+++F+E+  K  +PN  TYN +I GLC  G M    E V  M D    P++ TYNI + 
Sbjct: 354 AMVLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLD 413

Query: 391 YFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450
            FC +   E+ + LF ++  G+  P+   Y++++ +     K + L +A + L  ++  G
Sbjct: 414 AFCKSKPYEKAISLFRQIVQGI-WPDFYMYDVIVENFC---KGEKLKIAEEALQHLLIHG 469

Query: 451 FMPRKFTFNRVLNGL 465
             P   T+  ++N L
Sbjct: 470 CCPNVRTYTIMINAL 484



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 105/361 (29%), Positives = 175/361 (48%), Gaps = 4/361 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           FD  +    R+  Y T  +L  ++ S  + P+  T  I+   Y        A  +  ++ 
Sbjct: 58  FDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATLTILINCYCHQAHLSFAFSLLGTIL 117

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNL-FKVFRGKFKADVISYNVIANGWCLVKRTN 224
           + G + ++ +FNT+++  C    V KA      +    +  D  SY  + NG C   +T 
Sbjct: 118 KMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCKNGQTR 177

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
            AL++L++M +  + PNL TY+ V+ G  +   I +A R F  +  R   +DVV Y +++
Sbjct: 178 DALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLI 237

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
           HG   VG+ + A  +   MV G + P   T+N ++  LCK+  +  A  VF  M+ +G  
Sbjct: 238 HGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEK 297

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           P+  TYN ++ G C +  +  A E   RM     EP+V  YN+LI  +C    ++  + L
Sbjct: 298 PDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVL 357

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           F+++     +PNL TYN LI  +    K   +    +L+ EM DRG  P   T+N  L+ 
Sbjct: 358 FKEIRCKNLVPNLATYNSLIDGLC---KLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDA 414

Query: 465 L 465
            
Sbjct: 415 F 415



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 159/305 (52%), Gaps = 7/305 (2%)

Query: 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADV 207
           S G+   A ++   M          +FN ++D LCKE ++ +A  +F V   RG+ K D+
Sbjct: 242 SVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGE-KPDI 300

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           ++YN +  G+CL    ++A E+   MV RGL P++  YN+++ GY +   ++EA   F E
Sbjct: 301 VTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKE 360

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           ++ +    ++ TY +++ G   +G +   + + D M + G  P + TYN  +   CK   
Sbjct: 361 IRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKP 420

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
            E AI +F ++V +G  P+   Y+V++   C   +++ A E +  +    C PNV+TY I
Sbjct: 421 YEKAISLFRQIV-QGIWPDFYMYDVIVENFCKGEKLKIAEEALQHLLIHGCCPNVRTYTI 479

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           +I   C     +  + L  KM    C P+  T+  +I ++  R ++D    A KL +EM+
Sbjct: 480 MINALCKDCSFDEAMTLLSKMDDNDCPPDAVTFETIIGALQERNETDK---AEKLRLEMI 536

Query: 448 DRGFM 452
           +RG +
Sbjct: 537 ERGLV 541



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 161/341 (47%), Gaps = 4/341 (1%)

Query: 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADV 207
           V  G    A+ +F  +H  G   S+ +   +++  C +  +  A++L   + +  F+ ++
Sbjct: 66  VRMGHYPTAISLFSQLHSKGITPSIATLTILINCYCHQAHLSFAFSLLGTILKMGFQPNM 125

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           +++N + NG+C+    +KA+    +++ +G   +  +Y  ++ G  + GQ  +A +   +
Sbjct: 126 VTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCKNGQTRDALQLLQK 185

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M++     +++TY+T++ G      I  A  +F  + + G+L  V  YN++I   C    
Sbjct: 186 MEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQ 245

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
              A  +   MV     P+  T+N+++  LC  G +  A      M     +P++ TYN 
Sbjct: 246 WREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNA 305

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           L+  FC +  +    ELF +M      P++  YN+LI+        D+ +V   L  E+ 
Sbjct: 306 LMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMV---LFKEIR 362

Query: 448 DRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            +  +P   T+N +++GL  +G     +E++      G+ P
Sbjct: 363 CKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSP 403



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 111/249 (44%), Gaps = 3/249 (1%)

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           P +  ++ +L    R G    A   F ++  +     + T T +++ +     +  A ++
Sbjct: 53  PPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATLTILINCYCHQAHLSFAFSL 112

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
              ++  G  P++ T+N +I   C    V  A+    +++ KGY  +  +Y  +I GLC 
Sbjct: 113 LGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCK 172

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419
            G+   AL+ + +M++D   PN+ TY+ +I   C    I   L LF  + S   L ++  
Sbjct: 173 NGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVA 232

Query: 420 YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           YN LI       +  +   A +LL  MV     P  +TFN +++ L   G    A+ +  
Sbjct: 233 YNSLIHGCCSVGQWRE---ATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFA 289

Query: 480 LQSRCGRLP 488
           +  + G  P
Sbjct: 290 VMMKRGEKP 298



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 81/190 (42%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            L   ++  +L P   T+  + +     G+     ++   M + G    + ++N  LD  
Sbjct: 356 VLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAF 415

Query: 184 CKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           CK K  EKA +LF+        D   Y+VI   +C  ++   A E L+ ++  G  PN+ 
Sbjct: 416 CKSKPYEKAISLFRQIVQGIWPDFYMYDVIVENFCKGEKLKIAEEALQHLLIHGCCPNVR 475

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY I++    +    +EA     +M    C  D VT+ TI+       E  +A  +   M
Sbjct: 476 TYTIMINALCKDCSFDEAMTLLSKMDDNDCPPDAVTFETIIGALQERNETDKAEKLRLEM 535

Query: 304 VNGGVLPSVA 313
           +  G++   A
Sbjct: 536 IERGLVNDEA 545



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 5/167 (2%)

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
           F+ M+     P +  ++ ++  + +      AI +F ++  KG  P+  T  ++I   CH
Sbjct: 43  FNRMLRKHPPPPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATLTILINCYCH 102

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL-FEKMGSGVCLPNLD 418
              +  A   +G +     +PN+ T+N LI  FC  G + + +    + M  G  L    
Sbjct: 103 QAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEF- 161

Query: 419 TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           +Y  LI+ +    ++ D L   +LL +M +    P   T++ V++GL
Sbjct: 162 SYGSLINGLCKNGQTRDAL---QLLQKMEEDLVRPNLITYSTVIDGL 205



 Score = 42.4 bits (98), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 31/156 (19%), Positives = 67/156 (42%), Gaps = 3/156 (1%)

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
           K  +V++ +L F  M+ K   P    ++ ++  +   G    A+    ++      P++ 
Sbjct: 32  KFHTVDDTLLSFNRMLRKHPPPPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIA 91

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
           T  ILI  +C    +     L   +      PN+ T+N LI+   +         A    
Sbjct: 92  TLTILINCYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSK---AMAFR 148

Query: 444 IEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           ++++ +G+   +F++  ++NGL   G    A ++L+
Sbjct: 149 LDLMAKGYPLDEFSYGSLINGLCKNGQTRDALQLLQ 184


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/448 (26%), Positives = 208/448 (46%), Gaps = 81/448 (18%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
           ++ +D+   +  +  M      PT  T+  I +    AG+   AVK+   M + GC  ++
Sbjct: 56  SKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNI 115

Query: 174 NSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLK 231
            ++N I++ LC+E+K+++A  + +    RG F  DV++YN    G C   R ++A + L 
Sbjct: 116 YTYNVIVEGLCEERKLDEAKKMLEEMAVRGYF-PDVVTYNSFIKGLCKCDRVDEARKFLA 174

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
            M    + P++ +Y  V+ G  ++G ++ A R   +M  R C  DVVTY++++ GF   G
Sbjct: 175 RM---PVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGG 231

Query: 292 EIKRARNVFDGMVN-----------------------------------GGVLPSVATYN 316
           E++RA  + D M+                                     G  P V +YN
Sbjct: 232 EVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYN 291

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV------ 370
           A I  LCK + V+ A  VF+ MV +G  PN+++Y++++  LC   E++ A+  V      
Sbjct: 292 ACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREK 351

Query: 371 -------------------GRMKD---------DE--CEPNVQTYNILIRYFCDAGEIER 400
                              GR  +         DE  CEP+V  YN+++   C   +I++
Sbjct: 352 YQIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDK 411

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
            L++ ++M    C  N+ T+NIL+  + V  +  D   A  +L+ MVD GF+P   T+  
Sbjct: 412 ALQIHKQMLERNCC-NVVTWNILVHGLCVDDRLSD---AETMLLTMVDEGFIPDFVTYGT 467

Query: 461 VLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           +++ +   G    A E+     + G +P
Sbjct: 468 LVDAMCKCGKSAAALELFEEAVKGGCVP 495



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 168/339 (49%), Gaps = 6/339 (1%)

Query: 102 SPSSFDHAIDLAA--RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
            P +F  AI L    R         L+ RMK +   P    +  +   Y  A    +A K
Sbjct: 7   QPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFK 66

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWC 218
               M ++ C  ++ ++  I+D LCK  + + A  L    R K    ++ +YNVI  G C
Sbjct: 67  FLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLC 126

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
             ++ ++A ++L+EM  RG  P++ TYN  +KG  +  +++EA +F   M       DVV
Sbjct: 127 EERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTP---DVV 183

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           +YTT+++G    G++  A  + D M N G  P V TY+++I   CK   VE A+ + + M
Sbjct: 184 SYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSM 243

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
           +  G  PN   YN ++  L   G + +A + +  M+     P+V +YN  I   C A  +
Sbjct: 244 LKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERV 303

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
           ++   +F++M    C PN  +Y++L+  +  +K+ DD +
Sbjct: 304 KKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAI 342



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 154/304 (50%), Gaps = 9/304 (2%)

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR--GKFKADVISYNVIANGWCLVK 221
           M +  C+    +F  +L  LC+  ++EKA  L    +  G    D I YN + +G+   K
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAI-YNALISGYSKAK 59

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
              +A + L EMV     P + TY  ++ G  +AG+ ++A +   EM+ + C  ++ TY 
Sbjct: 60  DFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYN 119

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
            IV G     ++  A+ + + M   G  P V TYN+ I+ LCK D V+ A      M   
Sbjct: 120 VIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARM--- 176

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
              P+  +Y  VI GLC +G+++ A   + +M +  C P+V TY+ LI  FC  GE+ER 
Sbjct: 177 PVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERA 236

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
           + L + M    C PN+  YN L+ ++    +   +  A  +L+EM  RGF P   ++N  
Sbjct: 237 MGLLDSMLKLGCRPNMVAYNSLLGAL---HRLGHIGKAEDMLVEMERRGFTPDVVSYNAC 293

Query: 462 LNGL 465
           ++GL
Sbjct: 294 IDGL 297



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/417 (23%), Positives = 199/417 (47%), Gaps = 33/417 (7%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S+   I+   +  D  +   ++ +M +    P   T++ + + +   G+ +RA+ +  SM
Sbjct: 184 SYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSM 243

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRT 223
            + GCR ++ ++N++L  L +   + KA + L ++ R  F  DV+SYN   +G C  +R 
Sbjct: 244 LKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERV 303

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            KA  V   MV+RG  PN ++Y+++++   +  ++++A     + +++   +D++ YT +
Sbjct: 304 KKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVL 363

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVL-PSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           + G    G    A  +F  +++  +  P V  YN M+   CK+  ++ A+ + ++M+ + 
Sbjct: 364 LDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERN 423

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
              N  T+N+++ GLC    +  A   +  M D+   P+  TY  L+   C  G+    L
Sbjct: 424 CC-NVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAAL 482

Query: 403 ELFEKMGSGVCLPNLDTYNILISSM---------------------------FVRKKSDD 435
           ELFE+   G C+P++ TY+ LI+ +                           +    S D
Sbjct: 483 ELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLDVALWNAMILGYAENGSGD 542

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ-GLAKEILRLQSRCGRLPRQF 491
           L +  KL +E+++    P   TF + ++G L+     G A+ +     + G  P  F
Sbjct: 543 LGL--KLFVELIESDVEPNARTFGKEISGKLVKAESLGKARGLFDRAVKGGFFPDLF 597



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 174/356 (48%), Gaps = 12/356 (3%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++  M+     P   ++    +    A +  +A  +F  M E GC  + +S++ +++ LC
Sbjct: 274 MLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELC 333

Query: 185 KEKKVEKAYNLFKVFRGKFK-ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL-NPNL 242
           K+K+++ A  L +  R K++  D++ Y V+ +G C   R ++A  +  +++D  +  P++
Sbjct: 334 KKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDV 393

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
             YN++L  + +  QI++A +   +M +R C  +VVT+  +VHG  V   +  A  +   
Sbjct: 394 FFYNVMLDSHCKRRQIDKALQIHKQMLERNC-CNVVTWNILVHGLCVDDRLSDAETMLLT 452

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           MV+ G +P   TY  ++  +CK      A+ +FEE V  G +P+  TY+ +I GL H   
Sbjct: 453 MVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENM 512

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
            E A     ++       +V  +N +I  + + G  + GL+LF ++      PN  T+  
Sbjct: 513 AEEAYLLFTKL-------DVALWNAMILGYAENGSGDLGLKLFVELIESDVEPNARTFGK 565

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
            IS   V+ +S  L  A  L    V  GF P  F  N +++     G+   A+ I 
Sbjct: 566 EISGKLVKAES--LGKARGLFDRAVKGGFFPDLFVANTLIDVFAKCGDLEEARRIF 619



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 127/255 (49%), Gaps = 10/255 (3%)

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M+D+   P+  T+ I+L+G  R+ Q+E+A +    MK+  C  D   Y  ++ G+    +
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKD 60

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
             +A      MV    LP+V TY  ++  LCK    ++A+ + +EM  KG  PN  TYNV
Sbjct: 61  FGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNV 120

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           ++ GLC   +++ A + +  M      P+V TYN  I+  C    ++   +   +M    
Sbjct: 121 IVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPV-- 178

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN-- 470
             P++ +Y  +I+ +    KS DL  A ++L +M +RG  P   T++ +++G    G   
Sbjct: 179 -TPDVVSYTTVINGLC---KSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVE 234

Query: 471 --QGLAKEILRLQSR 483
              GL   +L+L  R
Sbjct: 235 RAMGLLDSMLKLGCR 249



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 135/309 (43%), Gaps = 9/309 (2%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           + SS+   ++   + ++     TLV + +          + ++ +     G+ D A  +F
Sbjct: 321 NASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEACALF 380

Query: 162 LS-MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV 220
              + E  C   +  +N +LD  CK ++++KA  + K    +   +V+++N++ +G C+ 
Sbjct: 381 SKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCCNVVTWNILVHGLCVD 440

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
            R + A  +L  MVD G  P+  TY  ++    + G+   A   F E  K  C  DVVTY
Sbjct: 441 DRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTY 500

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
           + ++ G       + A  +F  +        VA +NAMI    +  S +  + +F E++ 
Sbjct: 501 SALITGLVHENMAEEAYLLFTKL-------DVALWNAMILGYAENGSGDLGLKLFVELIE 553

Query: 341 KGYMPNSTTYNVVIRG-LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
               PN+ T+   I G L     + +A     R       P++   N LI  F   G++E
Sbjct: 554 SDVEPNARTFGKEISGKLVKAESLGKARGLFDRAVKGGFFPDLFVANTLIDVFAKCGDLE 613

Query: 400 RGLELFEKM 408
               +F  M
Sbjct: 614 EARRIFYSM 622


>gi|15241508|ref|NP_196986.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173968|sp|Q9LEQ7.1|PP382_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g14820, mitochondrial; Flags: Precursor
 gi|9755750|emb|CAC01881.1| putative protein [Arabidopsis thaliana]
 gi|332004697|gb|AED92080.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 104/408 (25%), Positives = 210/408 (51%), Gaps = 6/408 (1%)

Query: 54  RTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLA 113
           R +   L    L  +  L+ ++++R  +    A  FF   +    +AH   +++  + + 
Sbjct: 145 RNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSIL 204

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
           A+ R + T+ +++  M +  L  T +TF I  + + +A +  +AV IF  M ++  +  +
Sbjct: 205 AKTRQFETMVSVLEEMGTKGL-LTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGV 263

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
            + N +LD L + K  ++A  LF   + +F  ++++Y V+ NGWC V+   +A  +  +M
Sbjct: 264 ETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDM 323

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           +D GL P++  +N++L+G  R+ +  +A + F  MK +    +V +YT ++  F     +
Sbjct: 324 IDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSM 383

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           + A   FD MV+ G+ P  A Y  +I     +  ++    + +EM  KG+ P+  TYN +
Sbjct: 384 ETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNAL 443

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGV 412
           I+ + +    E       +M  +E EP++ T+N++++ +  A   E G  ++++M   G+
Sbjct: 444 IKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGI 503

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
           C P+ ++Y +LI  +    KS +   A + L EM+D+G       +N+
Sbjct: 504 C-PDDNSYTVLIRGLISEGKSRE---ACRYLEEMLDKGMKTPLIDYNK 547



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 109/261 (41%), Gaps = 1/261 (0%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           R+R+      + + M    L P      ++ E  + + K   A+K+F  M   G   ++ 
Sbjct: 309 RVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVR 368

Query: 175 SFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           S+  ++   CK+  +E A   F  +     + D   Y  +  G+   K+ +   E+LKEM
Sbjct: 369 SYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEM 428

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
            ++G  P+  TYN ++K        E   R + +M + + E  + T+  I+  + V    
Sbjct: 429 QEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNY 488

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           +  R V+D M+  G+ P   +Y  +I+ L  +     A    EEM+ KG       YN  
Sbjct: 489 EMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNKF 548

Query: 354 IRGLCHTGEMERALEFVGRMK 374
                  G+ E   E   R K
Sbjct: 549 AADFHRGGQPEIFEELAQRAK 569



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 5/153 (3%)

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           TYN+M+ +L K    E  + V EEM  KG +    T+ + ++      E ++A+     M
Sbjct: 196 TYNSMMSILAKTRQFETMVSVLEEMGTKGLL-TMETFTIAMKAFAAAKERKKAVGIFELM 254

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
           K  + +  V+T N L+     A   +    LF+K+      PN+ TY +L++  + R + 
Sbjct: 255 KKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFT-PNMMTYTVLLNG-WCRVR- 311

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
            +L+ A ++  +M+D G  P     N +L GLL
Sbjct: 312 -NLIEAARIWNDMIDHGLKPDIVAHNVMLEGLL 343


>gi|224107981|ref|XP_002314676.1| predicted protein [Populus trichocarpa]
 gi|222863716|gb|EEF00847.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/435 (25%), Positives = 202/435 (46%), Gaps = 3/435 (0%)

Query: 55  TLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAA 114
            + + L+   +  T  LV Q++KR  N  L AL  F        Y H P  ++  ID+  
Sbjct: 123 AVVEALNESGISATHDLVSQLLKRFSNQWLIALGVFIWAKNQTGYVHKPEIYNSMIDILG 182

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           + R +  +W LV  M  L+   +  T   + +R V  GK + A+  F  + + G  +S  
Sbjct: 183 KSRKFSLMWDLVQEMSGLNGYVSLVTMGKVMKRLVRDGKYNEAIDAFRGLEKFGLSKSTE 242

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           + N ++D+L +  +VE A  +   F G    D  SYN++++G+C  +    A + ++EM 
Sbjct: 243 AMNVLMDILARNGRVEDARAVALEFEGCLTLDYRSYNILSSGYCKARMFGDARKTMEEME 302

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
           +RG +PN+ +Y   ++ Y              EM+++ C  D++TYT  +   G   +I 
Sbjct: 303 ERGFHPNVVSYTAFIEAYGEQKDFRNVEIILNEMQEKGCPPDLITYTVYIRALGKARQIN 362

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
           +A  + + +   G +     Y ++I  LC    +++A  +FE++  +G   +   Y  +I
Sbjct: 363 KALEICEEIKRNGFVLGTQFYCSLIHSLCLSGRLKDAWNIFEDVEKQGVGRDLGMYKAMI 422

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
              C   + E AL+ + +M++D C+P+VQTY  L++  C    ++    L   M      
Sbjct: 423 SAACALSQDESALKLLHKMEEDSCKPDVQTYAPLLKMCCRKKSMKMLKFLLNHMFENDVS 482

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
            ++ TY++L+  +   +K   L  A     E V +G +P   T+  +L  L       + 
Sbjct: 483 IDIVTYDLLVHGL---RKQGKLKYACFFFQEAVLKGMVPCDKTYKILLEELERKNMAEMK 539

Query: 475 KEILRLQSRCGRLPR 489
            +I +L  R   L R
Sbjct: 540 GKIEKLMLRAKELNR 554


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 138/481 (28%), Positives = 225/481 (46%), Gaps = 36/481 (7%)

Query: 25  LTTTSPAPLPPAAADPAALASLILT-----STDPRTLTQTLH-------CPSLHWTPQLV 72
           L   + AP   A     ALA  +       +  PR L+ T H       C +    P+L 
Sbjct: 84  LAALARAPSSAACRSGPALAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELA 143

Query: 73  DQIIKRLWNHALKALHFFNILSYHPTYAHSPSS-FDHAIDLAARLRDYRTVWTLVHRMKS 131
                +L    L+      I++ H       +   D A+D+            L+HR   
Sbjct: 144 LAFFGQLLRTGLRV---NIIIANHLLEGFCEAKRTDEALDI------------LLHRTPE 188

Query: 132 LSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG--CRQSLNSFNTILDLLCKEKKV 189
           L   P   +++I+ +     GK+ +A  +   M E G  C  ++ ++NT++D   KE  V
Sbjct: 189 LGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDV 248

Query: 190 EKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
            KA +LFK  V RG    D+++YN + +  C  +  +KA   L++MV++ + PN  TYN 
Sbjct: 249 NKACDLFKEMVQRG-IPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNN 307

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ GY   GQ +EA R F EM++     DVVT + ++      G+IK AR+VFD M   G
Sbjct: 308 LIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKG 367

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
             P V +YN M+     K  + +   +F+ M+G G  P+  T+NV+I+   + G +++A+
Sbjct: 368 QNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAM 427

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
                M+D   +P+V TY  +I   C  G+++  +E F +M      P+   YN LI   
Sbjct: 428 IIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQG- 486

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
           F    S  LL A +L+ E+++ G       F+ ++N L  +G    A+ I  L    G  
Sbjct: 487 FCTHGS--LLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLH 544

Query: 488 P 488
           P
Sbjct: 545 P 545



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 107/403 (26%), Positives = 182/403 (45%), Gaps = 49/403 (12%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  +    + R        + +M +  + P   T+  +   Y S G+   AV++F  M
Sbjct: 269 TYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM 328

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFK-ADVISYNVIANGW----CL 219
             H     + + + ++  LCK  K+++A ++F     K +  DV SYN++ NG+    CL
Sbjct: 329 RRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCL 388

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
           V  T    ++   M+  G+ P+  T+N+++K Y   G +++A   F EM+    + DVVT
Sbjct: 389 VDMT----DLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVT 444

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ------------------- 320
           Y T++     +G++  A   F+ M++ GV P    YN +IQ                   
Sbjct: 445 YRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIM 504

Query: 321 ----------------VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
                            LCK   V +A  +F+  V  G  P++  Y++++ G C  G+ME
Sbjct: 505 NNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKME 564

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
           +AL     M     EPNV  Y  L+  +C  G I+ GL LF +M      P+   Y+I+I
Sbjct: 565 KALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIII 624

Query: 425 SSMFVRKKSDDLLVAGKLLI-EMVDRGFMPRKFTFNRVLNGLL 466
             +F   ++    V  K+   EM + G      T+N VL GL 
Sbjct: 625 DGLFQAGRT----VPAKMKFHEMTESGIAMDICTYNIVLRGLF 663



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 99/399 (24%), Positives = 183/399 (45%), Gaps = 12/399 (3%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAA--RLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           KA+  FN +  H      P    +   +AA  R+          ++M    + P +  + 
Sbjct: 425 KAMIIFNEMRDHGV---KPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYN 481

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV-FRG 201
            + + + + G   +A ++   +  +G    +  F++I++ LCK  +V  A N+F +    
Sbjct: 482 CLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNV 541

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
               D + Y+++ +G+CLV +  KAL V   MV  G+ PN+  Y  ++ GY + G+I+E 
Sbjct: 542 GLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEG 601

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
              F EM +R  +   + Y+ I+ G    G    A+  F  M   G+   + TYN +++ 
Sbjct: 602 LSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRG 661

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           L K    + AI +F+E+       N  T N +I G+  T  +E A +    +      PN
Sbjct: 662 LFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPN 721

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
           V TY+I+I      G +E   ++F  M +  C PN    N ++  +    K ++++ AG 
Sbjct: 722 VVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELL---KKNEIVRAGA 778

Query: 442 LLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
            L ++ +R F     T   +++   L  ++G  +E +R 
Sbjct: 779 YLSKIDERNFSLEHLTAMLLVD---LFSSKGTCREQIRF 814



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 157/356 (44%), Gaps = 39/356 (10%)

Query: 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
           + P   TF ++ + Y + G  D+A+ IF  M +HG                         
Sbjct: 403 IAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHG------------------------- 437

Query: 194 NLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
                     K DV++Y  +    C + + + A+E   +M+D+G+ P+   YN +++G+ 
Sbjct: 438 ---------VKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFC 488

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
             G + +A     E+      +D+V +++I++    +G +  A+N+FD  VN G+ P   
Sbjct: 489 THGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAV 548

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
            Y+ ++   C    +E A+ VF+ MV  G  PN   Y  ++ G C  G ++  L     M
Sbjct: 549 VYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREM 608

Query: 374 KDDECEPNVQTYNILIRYFCDAGE-IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
                +P+   Y+I+I     AG  +   ++  E   SG+ + ++ TYNI++  +F  + 
Sbjct: 609 LQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAM-DICTYNIVLRGLFKNRC 667

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            D+ +    L  E+          T N +++G+        AK++    SR   +P
Sbjct: 668 FDEAIF---LFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVP 720


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 99/351 (28%), Positives = 181/351 (51%), Gaps = 8/351 (2%)

Query: 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
           + P   T+  + +     GK DRA ++   M   G      +F+ ++   C  +KV++A 
Sbjct: 77  MAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEAL 136

Query: 194 NLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV---DRGLNPNLTTYNIVL 249
            L+K +     + D +S + +  G C  +R  +A E+ +EM    D    P++ TY  ++
Sbjct: 137 KLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPDVVTYTALI 196

Query: 250 KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
            G+ ++G +E+A +    M+ RKC  +VVTY++++HG    G++ +A ++F  M + G +
Sbjct: 197 DGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCV 256

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           P+V TY  +I  LC    V+ A L+ +EM       ++ +YN ++ G C  G +E A + 
Sbjct: 257 PNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQL 316

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL-PNLDTYNILISSMF 428
              M    C P+  TY  L+R FC+A  +E    L E M +   + P++ TY+I+++  +
Sbjct: 317 FKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAG-Y 375

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
            R K    + A + + EM+ R   P   T++ +++GL   G    A E+L+
Sbjct: 376 SRAKR--FVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLK 424



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 108/394 (27%), Positives = 186/394 (47%), Gaps = 47/394 (11%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           +V  MK   + P + TF+ +   + +A K D A+K++  +    CR    S + ++  LC
Sbjct: 103 MVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLC 162

Query: 185 KEKKVEKAYNLFKVFR----GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
           +E+++ +AY LF+       G +K DV++Y  + +G+C      KA+++L  M  R   P
Sbjct: 163 RERRIGEAYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVP 222

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           N+ TY+ +L G  +AG +++A   F  M  + C  +VVTYTT++HG     ++  AR + 
Sbjct: 223 NVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLM 282

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           D M          +YNA++   C+   +E A  +F+EM  K  +P+  TY  ++RG C+ 
Sbjct: 283 DEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNA 342

Query: 361 GEME------------------------------------RALEFVGRMKDDECEPNVQT 384
             +E                                     A EF+  M      PN  T
Sbjct: 343 SRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVT 402

Query: 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLI 444
           Y+ LI   C AG +   +E+ + +      P++ TY I+I  +    ++++ L    LL 
Sbjct: 403 YSSLIDGLCKAGRVNHAMEVLKNVDK----PDVVTYTIVIEGLCGTDRTEEALT---LLE 455

Query: 445 EMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           EMV++   P   TFN V+  L  +G+   A ++L
Sbjct: 456 EMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLL 489



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 173/337 (51%), Gaps = 9/337 (2%)

Query: 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE-HGCRQSLNSFNTILDLLCKEKKVEKA 192
           + P ++T+ ++      A    +A ++   M +       L +++T+++  CK+ ++++A
Sbjct: 5   VAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRA 64

Query: 193 YNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250
             + +  V R     DV++Y  + +G C   + ++A E+++EM  +G+ P+  T++ ++ 
Sbjct: 65  CEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALIT 124

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM---VNGG 307
           G+  A +++EA + + E+    C +D V+ + ++ G      I  A  +F  M    +G 
Sbjct: 125 GWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGA 184

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
             P V TY A+I   CK  ++E A+ +   M G+  +PN  TY+ ++ GLC  G++++AL
Sbjct: 185 WKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQAL 244

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           +   RM    C PNV TY  LI   C A +++    L ++M +  C  +  +YN L+   
Sbjct: 245 DLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGY 304

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
               + ++   A +L  EM  +  +P + T+  ++ G
Sbjct: 305 CRLGRIEE---AKQLFKEMAAKSCLPDRITYTCLVRG 338



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 110/377 (29%), Positives = 170/377 (45%), Gaps = 16/377 (4%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177
           D      L  RM S    P   T+  +     +A K D A  +   M    C     S+N
Sbjct: 239 DLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYN 298

Query: 178 TILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEM-VD 235
            +LD  C+  ++E+A  LFK    K    D I+Y  +  G+C   R  +A  +L+ M   
Sbjct: 299 ALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTA 358

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
            G++P++ TY+IV+ GY RA +  EA  F  EM  R    + VTY++++ G    G +  
Sbjct: 359 AGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNH 418

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
           A  V   +      P V TY  +I+ LC  D  E A+ + EEMV K   P+  T+N VI 
Sbjct: 419 AMEVLKNVDK----PDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIG 474

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE-------KM 408
            LC  G+M+ A + +  M     EP + TY  L+  F   G +E   ELFE       K 
Sbjct: 475 ALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRRKAKKS 534

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
            S   L     ++ LI  +   ++ D  +    ++ E+  R   P +     +++GLL  
Sbjct: 535 SSAANLVPEQAFSALIRGLCKAREIDKAMA---VVEELRSRECEPAEEDCLAIVDGLLRA 591

Query: 469 GNQGLAKEILRLQSRCG 485
           G    A +++   S+ G
Sbjct: 592 GRTEEAGKLINSISKVG 608



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 133/266 (50%), Gaps = 14/266 (5%)

Query: 113 AARLRDYRTVWTLVHRMKSLS-LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ 171
           A+RL + R    L+  MK+ + + P   T++I+   Y  A +   A +    M       
Sbjct: 342 ASRLEEARF---LLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAP 398

Query: 172 SLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLK 231
           +  ++++++D LCK  +V  A    +V +   K DV++Y ++  G C   RT +AL +L+
Sbjct: 399 NAVTYSSLIDGLCKAGRVNHA---MEVLKNVDKPDVVTYTIVIEGLCGTDRTEEALTLLE 455

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
           EMV++ + P++ T+N V+    R G ++EAW+  + M     E  +VTYTT++ GF   G
Sbjct: 456 EMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTG 515

Query: 292 EIKRARNVFDGMVNGGVLPSVA-------TYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            ++ A  +F+ M       S A        ++A+I+ LCK   ++ A+ V EE+  +   
Sbjct: 516 RMEIAYELFEVMRRKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMAVVEELRSRECE 575

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFV 370
           P       ++ GL   G  E A + +
Sbjct: 576 PAEEDCLAIVDGLLRAGRTEEAGKLI 601



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 127/254 (50%), Gaps = 8/254 (3%)

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI-DVVTYTTIVHGFGVVGEIKRARN 298
           PN  TYN+V+ G  +A    +A+    EM+  K    D+VTY+T+++GF   GE+ RA  
Sbjct: 7   PNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACE 66

Query: 299 VFDGMVN-GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
           +   MV   G+ P V TY +++  LC+   ++ A  +  EM  KG  P+  T++ +I G 
Sbjct: 67  ILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGW 126

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG---SGVCL 414
           C+  +++ AL+    +    C  +  + + LI   C    I    ELF++M     G   
Sbjct: 127 CNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWK 186

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           P++ TY  LI       KS +L  A K+L  M  R  +P   T++ +L+GL   G+   A
Sbjct: 187 PDVVTYTALIDGFC---KSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQA 243

Query: 475 KEILRLQSRCGRLP 488
            ++ R  +  G +P
Sbjct: 244 LDLFRRMTSKGCVP 257


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 113/410 (27%), Positives = 194/410 (47%), Gaps = 5/410 (1%)

Query: 80  WNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQK 139
           +N   +AL  FN +  H     S   F+  +   A+ + + T+ +L  +M S  + P   
Sbjct: 23  FNTLDEALSTFNRM-LHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVY 81

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           T AI+        + D A      + + G +    +F T++  LC E K+ +A +LF   
Sbjct: 82  TLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKM 141

Query: 200 RGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
            G+ F+ +V++Y  + NG C  ++  +A  +  EM+ +G++PN+ TYN ++ G  +  + 
Sbjct: 142 IGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEW 201

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           +       EM   K   DV T  T+V      G +  A +V D M++ GV P+V TYNA+
Sbjct: 202 KHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNAL 261

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           +   C ++ V+ A+ VF+ MV K  + N  +YN +I G C    +++A+     M   E 
Sbjct: 262 MDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQEL 321

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
            PN  TYN LI   C  G ++  + LF +M +   +P+L TY  L   +   +  D    
Sbjct: 322 TPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDK--- 378

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           A  LL  +    + P    +  +L+G+   G    A+++    S  G  P
Sbjct: 379 AMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQP 428



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 112/439 (25%), Positives = 198/439 (45%), Gaps = 46/439 (10%)

Query: 69  PQLVDQIIKRLWNHALKALHFFNILSYH---PTYAHSPSSFDHAIDLAARLRDYRTVWTL 125
           P  VD    RL     K  H   +LS      ++   P  +  AI + +     R  +  
Sbjct: 43  PSTVD--FNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAF 100

Query: 126 VHRMKSLSLG--PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
               K L LG  P   TF  +       GK   A+ +F  M   G + ++ ++ T+++ L
Sbjct: 101 SALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGL 160

Query: 184 CKEKKVEKAYNLF------------------------------------KVFRGKFKADV 207
           CK+++V +A+N+F                                    ++   K   DV
Sbjct: 161 CKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDV 220

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
            + N + +  C      +A +V+  M+ RG+ PN+ TYN ++ G+    +++ A + F  
Sbjct: 221 FTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDT 280

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M  + C  +V++Y T+++G+  +  + +A  +F+ M    + P+  TYN +I  LC    
Sbjct: 281 MVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGR 340

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
           +++AI +F EMV +G +P+  TY  +   LC    +++A+  +  ++    +P++Q Y  
Sbjct: 341 LQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTT 400

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           ++   C AGE+E   +LF  + S    PN+ TYNI+I  +    K   L  A KL  EM 
Sbjct: 401 ILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLC---KQGLLAEASKLFSEMN 457

Query: 448 DRGFMPRKFTFNRVLNGLL 466
             G  P   T+N +  G L
Sbjct: 458 KNGCSPNDCTYNLITRGFL 476



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 90/279 (32%), Positives = 155/279 (55%), Gaps = 6/279 (2%)

Query: 175 SFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
           + NT++D LCKE  V +A+++    + RG  + +V++YN + +G CL    + A++V   
Sbjct: 222 TLNTVVDALCKEGMVAEAHDVVDMMIHRG-VEPNVVTYNALMDGHCLRNEVDVAVKVFDT 280

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           MV +    N+ +YN ++ GY +   +++A   F EM +++   + VTY T++HG   VG 
Sbjct: 281 MVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGR 340

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           ++ A ++F  MV  G +P + TY  +   LCK   ++ A+ + + + G  + P+   Y  
Sbjct: 341 LQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTT 400

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           ++ G+C  GE+E A +    +     +PNV TYNI+I   C  G +    +LF +M    
Sbjct: 401 ILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNG 460

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
           C PN  TYN LI+  F+R  +++ L   +LL EM+ RGF
Sbjct: 461 CSPNDCTYN-LITRGFLR--NNEALRTIELLEEMLARGF 496



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 108/403 (26%), Positives = 188/403 (46%), Gaps = 22/403 (5%)

Query: 80  WNHALKALHFFN-ILSYHPTYAHSPSSFDHAIDLA--ARLRDYRTVWTLVHRMKSLSLGP 136
           +N    AL  FN +L  HP     PS+ D    L   A+++ Y TV +L  +M S  + P
Sbjct: 559 FNTLDDALSSFNRMLHMHP----PPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPP 614

Query: 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF 196
              T  I+   +    +   A  +   + + G +  + ++ T+++ LCK           
Sbjct: 615 DVYTLNILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLCK----------- 663

Query: 197 KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256
            + +G    D+ +YN + +  C +        +L EMV+  + PN+  ++ V+    + G
Sbjct: 664 MITKG-ISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEG 722

Query: 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
            I  A      M KR  E DVVTYT ++ G  +  E+  A  VFD MV+ G +P+V +YN
Sbjct: 723 MIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYN 782

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
            +I   C+   ++ A+ + E+M  +G + ++ TYN +I GLCH G ++ A+     M   
Sbjct: 783 ILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVAS 842

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
              P++ TY IL+ Y C    +   + L + +       ++  YNI I  M    ++ +L
Sbjct: 843 GQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMC---RAGEL 899

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
             A  L   +  +G  P   T+N +++GL   G    A ++ R
Sbjct: 900 EAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFR 942



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 131/235 (55%), Gaps = 3/235 (1%)

Query: 176 FNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           F+T++D LCKE  +  A+++  +   RG  + DV++Y  + +G CL    ++A++V   M
Sbjct: 711 FSTVVDALCKEGMIAIAHDVVDMMIKRG-VEPDVVTYTALMDGHCLRSEMDEAVKVFDTM 769

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           V +G  PN+ +YNI++ GY +  ++++A     +M  +    D VTY T++HG   VG +
Sbjct: 770 VHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRL 829

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           + A  +F  MV  G +P + TY  ++  LCK   +  A+++ + + G     +   YN+ 
Sbjct: 830 QHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIA 889

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           I G+C  GE+E A +    +     +P+V+TYNI+I   C  G ++   +LF KM
Sbjct: 890 IDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKM 944



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 115/226 (50%), Gaps = 1/226 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           +V  M    + P   T+  + + +    + D AVK+F +M   GC  ++ S+N +++  C
Sbjct: 730 VVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYC 789

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           + ++++KA  L +    +   AD ++YN + +G C V R   A+ +  EMV  G  P+L 
Sbjct: 790 QIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLV 849

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY I+L    +   + EA      ++    + D++ Y   + G    GE++ AR++F  +
Sbjct: 850 TYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNL 909

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
            + G+ P V TYN MI  LCK+  ++ A  +F +M       NST+
Sbjct: 910 SSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENDIWSNSTS 955



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 99/450 (22%), Positives = 169/450 (37%), Gaps = 66/450 (14%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S++  I+   +++       L   M    L P   T+  +       G+   A+ +F  M
Sbjct: 292 SYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEM 351

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
              G    L ++ T+ D LCK + ++KA  L K   G  +  D+  Y  I +G C     
Sbjct: 352 VARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGEL 411

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
             A ++   +  +GL PN+ TYNI++ G  + G + EA + F EM K  C  +  TY  I
Sbjct: 412 EDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLI 471

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI-------------QVLCKKDS--- 327
             GF    E  R   + + M+  G    V+T   ++             Q+LCK  S   
Sbjct: 472 TRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDGLDQSVKQILCKPSSSSR 531

Query: 328 ------------------------------VENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
                                         +++A+  F  M+     P++  +  ++  +
Sbjct: 532 PSGTQMRSLPPLFLSSSHNSLHSRSPHFNTLDDALSSFNRMLHMHPPPSTVDFTKLLTSI 591

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
                    L    +M      P+V T NILI  FC    +     +  K+      P++
Sbjct: 592 AKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGFQPDV 651

Query: 418 DTYNILISS---MFVRKKSDDLLV----------------AGKLLIEMVDRGFMPRKFTF 458
            TY  L++    M  +  S D+                     LL EMV+   MP    F
Sbjct: 652 VTYGTLMNGLCKMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVF 711

Query: 459 NRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           + V++ L   G   +A +++ +  + G  P
Sbjct: 712 STVVDALCKEGMIAIAHDVVDMMIKRGVEP 741



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 128/269 (47%), Gaps = 16/269 (5%)

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
           +K  +  L +  +M   G+ P++ T NI++  +    ++  A+    ++ K   + DVVT
Sbjct: 594 MKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVT 653

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y T+++G                M+  G+ P + TYN++I  LC     ++   +  EMV
Sbjct: 654 YGTLMNGLC-------------KMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMV 700

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
               MPN   ++ V+  LC  G +  A + V  M     EP+V TY  L+   C   E++
Sbjct: 701 NSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMD 760

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
             +++F+ M    C+PN+ +YNILI+     ++ D    A  LL +M  +G +    T+N
Sbjct: 761 EAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDK---AMGLLEQMSLQGLIADTVTYN 817

Query: 460 RVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            +++GL  +G    A  +       G++P
Sbjct: 818 TLIHGLCHVGRLQHAIALFHEMVASGQIP 846



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 76/425 (17%), Positives = 165/425 (38%), Gaps = 63/425 (14%)

Query: 111 DLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCR 170
           D   + R       L+  ++  +  P  + +  I +    AG+ + A  +F ++   G +
Sbjct: 368 DYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQ 427

Query: 171 QSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEV 229
            ++ ++N ++  LCK+  + +A  LF ++ +     +  +YN+I  G+       + +E+
Sbjct: 428 PNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIEL 487

Query: 230 LKEMVDRGLNPNLTTYNIVLKGYFRAG--------------------------------- 256
           L+EM+ RG + +++T  +++      G                                 
Sbjct: 488 LEEMLARGFSVDVSTTTLLVGMLSDDGLDQSVKQILCKPSSSSRPSGTQMRSLPPLFLSS 547

Query: 257 -------------QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
                         +++A   F  M         V +T ++     +       ++   M
Sbjct: 548 SHNSLHSRSPHFNTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQM 607

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            + G+ P V T N +I   C    +  A  V  +++  G+ P+  TY  ++ GLC     
Sbjct: 608 DSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLC----- 662

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
                   +M      P++ TYN LI   C+  E +    L  +M +   +PN+  ++ +
Sbjct: 663 --------KMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTV 714

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           + ++    K   + +A  ++  M+ RG  P   T+  +++G  L      A ++      
Sbjct: 715 VDALC---KEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVH 771

Query: 484 CGRLP 488
            G +P
Sbjct: 772 KGCVP 776


>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
 gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
 gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 110/365 (30%), Positives = 182/365 (49%), Gaps = 10/365 (2%)

Query: 106 FDHAIDLAARL------RDYRTVWTLVHRMKSLSLGPTQ-KTFAIIAERYVSAGKADRAV 158
           F HA  L  ++        + T  +L+H +       T+ + + +I   YV +   + ++
Sbjct: 55  FSHAQSLLLQVISGKIHSQFFTSSSLLHYLTESETSKTKFRLYEVIINSYVQSQSLNLSI 114

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWC 218
             F  M ++G     N FN +L  +       + ++ F   + K   DV S+ ++  G C
Sbjct: 115 SYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENKSKVVLDVYSFGILIKGCC 174

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
                 K+ ++L E+ + G +PN+  Y  ++ G  + G+IE+A   F EM K     +  
Sbjct: 175 EAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANER 234

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TYT +++G    G  K+   +++ M   GV P++ TYN ++  LCK    ++A  VF+EM
Sbjct: 235 TYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEM 294

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
             +G   N  TYN +I GLC   ++  A + V +MK D   PN+ TYN LI  FC  G++
Sbjct: 295 RERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKL 354

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
            + L L   + S    P+L TYNIL+S  F RK   D   A K++ EM +RG  P K T+
Sbjct: 355 GKALSLCRDLKSRGLSPSLVTYNILVSG-FCRK--GDTSGAAKMVKEMEERGIKPSKVTY 411

Query: 459 NRVLN 463
             +++
Sbjct: 412 TILID 416



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 179/367 (48%), Gaps = 6/367 (1%)

Query: 90  FNILSYHPTYAHSPSS--FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
           F++L     +  SP+   +   ID   +  +      L   M  L L   ++T+ ++   
Sbjct: 183 FDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLING 242

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKAD 206
               G   +  +++  M E G   +L ++N +++ LCK+ + + A+ +F   R +    +
Sbjct: 243 LFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCN 302

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           +++YN +  G C   + N+A +V+ +M   G+NPNL TYN ++ G+   G++ +A     
Sbjct: 303 IVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCR 362

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           ++K R     +VTY  +V GF   G+   A  +   M   G+ PS  TY  +I    + D
Sbjct: 363 DLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSD 422

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
           ++E AI +   M   G +P+  TY+V+I G C  G+M  A      M +  CEPN   YN
Sbjct: 423 NMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYN 482

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            +I  +C  G   R L+L ++M      PN+ +Y  +I  +   +KS +   A +L+ +M
Sbjct: 483 TMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKE---AERLVEKM 539

Query: 447 VDRGFMP 453
           +D G  P
Sbjct: 540 IDSGIDP 546



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 127/239 (53%), Gaps = 1/239 (0%)

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYN 211
           K + A K+   M   G   +L ++NT++D  C   K+ KA +L +  + +     +++YN
Sbjct: 318 KLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYN 377

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
           ++ +G+C    T+ A +++KEM +RG+ P+  TY I++  + R+  +E+A +  L M++ 
Sbjct: 378 ILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEEL 437

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
               DV TY+ ++HGF + G++  A  +F  MV     P+   YN MI   CK+ S   A
Sbjct: 438 GLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRA 497

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           + + +EM  K   PN  +Y  +I  LC   + + A   V +M D   +P+    +++ R
Sbjct: 498 LKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPSTSILSLISR 556


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 114/410 (27%), Positives = 189/410 (46%), Gaps = 14/410 (3%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAA--RLRDYRTVWTLVHRMKSLSLGPTQKTFAI 143
           A  F N LS   +Y   P +  +   L      + +  V  L   M   +  P + TF +
Sbjct: 234 AREFLNRLS---SYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDM 290

Query: 144 IAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF 203
           +   +   G  +RA+++   M  HGC  +    N +++ +CK+ +V+ A+       G +
Sbjct: 291 LVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNM-GSY 349

Query: 204 --KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
               D ISY  +  G C  +R   A E+LKEMV +   PN  T+N  +    + G IE+A
Sbjct: 350 GCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQA 409

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
                +M +  CE+++VTY  +V+GF V G +  A  +F  M      P+  TY  ++  
Sbjct: 410 TMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSM---PCKPNTITYTTLLTG 466

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           LC  + ++ A  +  EM+ K   PN  T+NV++   C  G M+ A+E V +M +  C PN
Sbjct: 467 LCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPN 526

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
           + TYN L+    +    E  LEL   + S    P++ TY+ +I    V  + D +  A K
Sbjct: 527 LITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIG---VLSREDRVEEAIK 583

Query: 442 LLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           +   + D G  P+   +N++L  L    N   A +        G +P + 
Sbjct: 584 MFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNEL 633



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 175/358 (48%), Gaps = 10/358 (2%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           +L+  M      P+  T+ ++ E    +    +A+++   M   GC  ++ ++N I++ +
Sbjct: 166 SLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGM 225

Query: 184 CKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           C+E +V+ A   L ++    F+ D +SY  +  G C  KR     E+  EM+++   PN 
Sbjct: 226 CREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNE 285

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            T++++++ + R G +E A +   +M    C  +      +++     G +  A    + 
Sbjct: 286 VTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNN 345

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M + G  P   +Y  +++ LC+ +  E+A  + +EMV K   PN  T+N  I  LC  G 
Sbjct: 346 MGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGL 405

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           +E+A   + +M +  CE N+ TYN L+  FC  G ++  LELF  M    C PN  TY  
Sbjct: 406 IEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP---CKPNTITYTT 462

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           L++ +   ++ D    A +LL EM+ +   P   TFN +++       +GL  E + L
Sbjct: 463 LLTGLCNAERLD---AAAELLAEMLQKDCAPNVVTFNVLVS---FFCQKGLMDEAIEL 514



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 103/360 (28%), Positives = 162/360 (45%), Gaps = 9/360 (2%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           + S+ + P   T+  I       G+   A+ +   M   GC+ S+ ++  +L+ +CK   
Sbjct: 136 IASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTG 195

Query: 189 VEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
             +A  +    R K    ++++YNVI NG C   R + A E L  +   G  P+  +Y  
Sbjct: 196 FGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTT 255

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           VLKG   A + E+    F EM ++ C  + VT+  +V  F   G ++RA  V + M   G
Sbjct: 256 VLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHG 315

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
              +    N +I  +CK+  V++A      M   G  P++ +Y  V++GLC     E A 
Sbjct: 316 CAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAK 375

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           E +  M    C PN  T+N  I   C  G IE+   L E+M    C  N+ TYN L++  
Sbjct: 376 ELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGF 435

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR--LQSRCG 485
            V+ + D  L   +L   M  +   P   T+  +L GL        A E+L   LQ  C 
Sbjct: 436 CVQGRVDSAL---ELFYSMPCK---PNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCA 489



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 183/379 (48%), Gaps = 9/379 (2%)

Query: 103 PSSFDHAIDLAARLRD--YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           PS   + + L A  +   +     ++  M++    P   T+ +I       G+ D A + 
Sbjct: 178 PSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREF 237

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCL 219
              +  +G +    S+ T+L  LC  K+ E    LF ++       + ++++++   +C 
Sbjct: 238 LNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCR 297

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
                +A++VL++M   G   N T  NIV+    + G++++A++F   M    C  D ++
Sbjct: 298 GGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTIS 357

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           YTT++ G       + A+ +   MV     P+  T+N  I +LC+K  +E A ++ E+M 
Sbjct: 358 YTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMS 417

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             G   N  TYN ++ G C  G ++ ALE    M    C+PN  TY  L+   C+A  ++
Sbjct: 418 EHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP---CKPNTITYTTLLTGLCNAERLD 474

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
              EL  +M    C PN+ T+N+L+ S F +K   D  +  +L+ +M++ G  P   T+N
Sbjct: 475 AAAELLAEMLQKDCAPNVVTFNVLV-SFFCQKGLMDEAI--ELVEQMMEHGCTPNLITYN 531

Query: 460 RVLNGLLLIGNQGLAKEIL 478
            +L+G+    N   A E+L
Sbjct: 532 TLLDGITNDCNSEEALELL 550



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 160/333 (48%), Gaps = 9/333 (2%)

Query: 90  FNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWT----LVHRMKSLSLGPTQKTFAIIA 145
           F  L+   +Y  SP +  +   L    R  R  W     L+  M   +  P + TF    
Sbjct: 340 FQFLNNMGSYGCSPDTISYTTVLKGLCRAER--WEDAKELLKEMVRKNCPPNEVTFNTFI 397

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA 205
                 G  ++A  +   M EHGC  ++ ++N +++  C + +V+ A  LF  +    K 
Sbjct: 398 CILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELF--YSMPCKP 455

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           + I+Y  +  G C  +R + A E+L EM+ +   PN+ T+N+++  + + G ++EA    
Sbjct: 456 NTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELV 515

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
            +M +  C  +++TY T++ G       + A  +  G+V+ GV P + TY+++I VL ++
Sbjct: 516 EQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSRE 575

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
           D VE AI +F  +   G  P +  YN ++  LC     + A++F   M  + C PN  TY
Sbjct: 576 DRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTY 635

Query: 386 NILIRYFCDAGEIERGLELFEKMGS-GVCLPNL 417
             LI    +   ++   +L  ++ S GV   NL
Sbjct: 636 ITLIEGLANEDFLKETRDLLRELCSRGVLNKNL 668



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 137/301 (45%), Gaps = 41/301 (13%)

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           C   RT+ A  VL+     G   ++  YN ++ GY R GQ++ A R    M       D 
Sbjct: 89  CRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMPVAP---DA 145

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
            TYT I+ G    G +  A ++ D M++ G  PSV TY  +++ +CK      A+ V +E
Sbjct: 146 YTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDE 205

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR------------------------- 372
           M  KG  PN  TYNV+I G+C  G ++ A EF+ R                         
Sbjct: 206 MRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKR 265

Query: 373 ----------MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
                     M +  C PN  T+++L+R+FC  G +ER +++ E+M    C  N    NI
Sbjct: 266 WEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNI 325

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           +I+++  + + DD   A + L  M   G  P   ++  VL GL        AKE+L+   
Sbjct: 326 VINTICKQGRVDD---AFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMV 382

Query: 483 R 483
           R
Sbjct: 383 R 383



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 87/373 (23%), Positives = 167/373 (44%), Gaps = 8/373 (2%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII 144
           +A+     +S H   A++ +  +  I+   +       +  ++ M S    P   ++  +
Sbjct: 303 RAIQVLEQMSGHGCAANT-TLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTV 361

Query: 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKF 203
            +    A + + A ++   M    C  +  +FNT + +LC++  +E+A  L  ++     
Sbjct: 362 LKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGC 421

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
           + ++++YN + NG+C+  R + ALE+   M      PN  TY  +L G   A +++ A  
Sbjct: 422 EVNIVTYNALVNGFCVQGRVDSALELFYSM---PCKPNTITYTTLLTGLCNAERLDAAAE 478

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
              EM ++ C  +VVT+  +V  F   G +  A  + + M+  G  P++ TYN ++  + 
Sbjct: 479 LLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGIT 538

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
              + E A+ +   +V  G  P+  TY+ +I  L     +E A++    ++D    P   
Sbjct: 539 NDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAV 598

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
            YN ++   C     +  ++ F  M S  C+PN  TY  LI  +      D L     LL
Sbjct: 599 IYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGL---ANEDFLKETRDLL 655

Query: 444 IEMVDRGFMPRKF 456
            E+  RG + +  
Sbjct: 656 RELCSRGVLNKNL 668



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 87/197 (44%), Gaps = 6/197 (3%)

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
           ++  A  + D   + G  P V     +I+ LC++    +A  V       G   +   YN
Sbjct: 58  DLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYN 117

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
            ++ G C  G+++ A   +  M      P+  TY  +IR  CD G +   L L + M   
Sbjct: 118 TLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHR 174

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
            C P++ TY +L+ ++    KS     A ++L EM  +G  P   T+N ++NG+   G  
Sbjct: 175 GCQPSVVTYTVLLEAVC---KSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRV 231

Query: 472 GLAKEILRLQSRCGRLP 488
             A+E L   S  G  P
Sbjct: 232 DDAREFLNRLSSYGFQP 248


>gi|47848296|dbj|BAD22160.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 454

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 113/399 (28%), Positives = 187/399 (46%), Gaps = 7/399 (1%)

Query: 62  CPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRT 121
           C  +  T  +VD ++ +  +    AL FF        Y H+  + +  +DL  ++R    
Sbjct: 29  CSGIRLTGNIVDTLLFKFGDDWKSALGFFQWAQSRDDYRHTAYACNRMVDLLGKMRQIDQ 88

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
           +W L+  M    L  T +T A    R   A +    V +F  + + G  ++  + N +LD
Sbjct: 89  MWELLSDMHGRGL-VTVETVAKSIRRLAGARRWKDVVLLFDKLEDMGLERNTETMNVLLD 147

Query: 182 LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           +LCKE+K+E A  +F V       D  ++N+  +GWC ++R ++A+  ++EM  RG  P+
Sbjct: 148 VLCKERKIEVAREVFAVLSPHIPPDAYTFNIFVHGWCSIRRIDEAMWTIEEMKRRGFPPS 207

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           + TY  VL+ Y +       +     M  + C  +V+TYT I+         + A +V  
Sbjct: 208 VITYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIMTSLAKCERFEEALSVSH 267

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE-EMVGKGYMPNSTTYNVVIRGLCHT 360
            M + G  P    YN++I +L K   +  A  VF  EM   G   N  TYN +I   C+ 
Sbjct: 268 RMKSSGCKPDTLFYNSLINLLGKSGHLFEASQVFRVEMPMNGVSHNLATYNTMISIFCYY 327

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCD-AGEIERGLELFEKMGSGVCLP-NLD 418
           G  + AL  +  M+   C+P++Q+Y  L+R F    G+ +    L  ++ S   L  +LD
Sbjct: 328 GRDDDALNVLKEMEAQSCKPDIQSYRPLLRLFLSRRGQADTVRHLLSELTSKHNLGLDLD 387

Query: 419 TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           TY +LI  +    +  D + A +L  EMV     PR  T
Sbjct: 388 TYTLLIHGLC---RVGDTVWAYQLFDEMVSSEIAPRSKT 423



 Score = 45.1 bits (105), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 5/149 (3%)

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           N M+ +L K   ++    +  +M G+G +   T     IR L      +  +    +++D
Sbjct: 74  NRMVDLLGKMRQIDQMWELLSDMHGRGLVTVETVAKS-IRRLAGARRWKDVVLLFDKLED 132

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
              E N +T N+L+   C   +IE   E+F  +   +  P+  T+NI +      ++ D+
Sbjct: 133 MGLERNTETMNVLLDVLCKERKIEVAREVFAVLSPHI-PPDAYTFNIFVHGWCSIRRIDE 191

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
            +     + EM  RGF P   T+  VL  
Sbjct: 192 AMWT---IEEMKRRGFPPSVITYTTVLEA 217


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 138/481 (28%), Positives = 225/481 (46%), Gaps = 36/481 (7%)

Query: 25  LTTTSPAPLPPAAADPAALASLILT-----STDPRTLTQTLH-------CPSLHWTPQLV 72
           L   + AP   A     ALA  +       +  PR L+ T H       C +    P+L 
Sbjct: 71  LAALARAPSSAACRSGPALAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELA 130

Query: 73  DQIIKRLWNHALKALHFFNILSYHPTYAHSPSS-FDHAIDLAARLRDYRTVWTLVHRMKS 131
                +L    L+      I++ H       +   D A+D+            L+HR   
Sbjct: 131 LAFFGQLLRTGLRV---NIIIANHLLEGFCEAKRTDEALDI------------LLHRTPE 175

Query: 132 LSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG--CRQSLNSFNTILDLLCKEKKV 189
           L   P   +++I+ +     GK+ +A  +   M E G  C  ++ ++NT++D   KE  V
Sbjct: 176 LGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDV 235

Query: 190 EKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
            KA +LFK  V RG    D+++YN + +  C  +  +KA   L++MV++ + PN  TYN 
Sbjct: 236 NKACDLFKEMVQRG-IPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNN 294

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ GY   GQ +EA R F EM++     DVVT + ++      G+IK AR+VFD M   G
Sbjct: 295 LIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKG 354

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
             P V +YN M+     K  + +   +F+ M+G G  P+  T+NV+I+   + G +++A+
Sbjct: 355 QNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAM 414

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
                M+D   +P+V TY  +I   C  G+++  +E F +M      P+   YN LI   
Sbjct: 415 IIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQG- 473

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
           F    S  LL A +L+ E+++ G       F+ ++N L  +G    A+ I  L    G  
Sbjct: 474 FCTHGS--LLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLH 531

Query: 488 P 488
           P
Sbjct: 532 P 532



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 107/403 (26%), Positives = 182/403 (45%), Gaps = 49/403 (12%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  +    + R        + +M +  + P   T+  +   Y S G+   AV++F  M
Sbjct: 256 TYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM 315

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFK-ADVISYNVIANGW----CL 219
             H     + + + ++  LCK  K+++A ++F     K +  DV SYN++ NG+    CL
Sbjct: 316 RRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCL 375

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
           V  T    ++   M+  G+ P+  T+N+++K Y   G +++A   F EM+    + DVVT
Sbjct: 376 VDMT----DLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVT 431

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV------------------ 321
           Y T++     +G++  A   F+ M++ GV P    YN +IQ                   
Sbjct: 432 YRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIM 491

Query: 322 -----------------LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
                            LCK   V +A  +F+  V  G  P++  Y++++ G C  G+ME
Sbjct: 492 NNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKME 551

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
           +AL     M     EPNV  Y  L+  +C  G I+ GL LF +M      P+   Y+I+I
Sbjct: 552 KALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIII 611

Query: 425 SSMFVRKKSDDLLVAGKLLI-EMVDRGFMPRKFTFNRVLNGLL 466
             +F   ++    V  K+   EM + G      T+N VL GL 
Sbjct: 612 DGLFQAGRT----VPAKVKFHEMTESGIAMDICTYNIVLRGLF 650



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 183/399 (45%), Gaps = 12/399 (3%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAA--RLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           KA+  FN +  H      P    +   +AA  R+          ++M    + P +  + 
Sbjct: 412 KAMIIFNEMRDHGV---KPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYN 468

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV-FRG 201
            + + + + G   +A ++   +  +G    +  F++I++ LCK  +V  A N+F +    
Sbjct: 469 CLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNV 528

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
               D + Y+++ +G+CLV +  KAL V   MV  G+ PN+  Y  ++ GY + G+I+E 
Sbjct: 529 GLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEG 588

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
              F EM +R  +   + Y+ I+ G    G    A+  F  M   G+   + TYN +++ 
Sbjct: 589 LSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRG 648

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           L K    + AI +F+E+       N  T N +I G+  T  +E A +    +      P+
Sbjct: 649 LFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPS 708

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
           V TY+I+I      G +E   ++F  M +  C PN    N ++  +    K ++++ AG 
Sbjct: 709 VVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELL---KKNEIVRAGA 765

Query: 442 LLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
            L ++ +R F     T   +++   L  ++G  +E +R 
Sbjct: 766 YLSKIDERNFSLEHLTTMLLVD---LFSSKGTCREHIRF 801



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 161/355 (45%), Gaps = 6/355 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   ++ I+   Y + G       +F  M   G      +FN ++        ++KA  +
Sbjct: 357 PDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMII 416

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F   R    K DV++Y  +    C + + + A+E   +M+D+G+ P+   YN +++G+  
Sbjct: 417 FNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCT 476

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G + +A     E+      +D+V +++I++    +G +  A+N+FD  VN G+ P    
Sbjct: 477 HGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVV 536

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y+ ++   C    +E A+ VF+ MV  G  PN   Y  ++ G C  G ++  L     M 
Sbjct: 537 YSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREML 596

Query: 375 DDECEPNVQTYNILIRYFCDAGE-IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
               +P+   Y+I+I     AG  +   ++  E   SG+ + ++ TYNI++  +F  +  
Sbjct: 597 QRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAM-DICTYNIVLRGLFKNRCF 655

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           D+ +    L  E+          T N +++G+        AK++    SR   +P
Sbjct: 656 DEAIF---LFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVP 707


>gi|297599556|ref|NP_001047351.2| Os02g0601600 [Oryza sativa Japonica Group]
 gi|255671066|dbj|BAF09265.2| Os02g0601600 [Oryza sativa Japonica Group]
          Length = 466

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 113/399 (28%), Positives = 187/399 (46%), Gaps = 7/399 (1%)

Query: 62  CPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRT 121
           C  +  T  +VD ++ +  +    AL FF        Y H+  + +  +DL  ++R    
Sbjct: 41  CSGIRLTGNIVDTLLFKFGDDWKSALGFFQWAQSRDDYRHTAYACNRMVDLLGKMRQIDQ 100

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
           +W L+  M    L  T +T A    R   A +    V +F  + + G  ++  + N +LD
Sbjct: 101 MWELLSDMHGRGL-VTVETVAKSIRRLAGARRWKDVVLLFDKLEDMGLERNTETMNVLLD 159

Query: 182 LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           +LCKE+K+E A  +F V       D  ++N+  +GWC ++R ++A+  ++EM  RG  P+
Sbjct: 160 VLCKERKIEVAREVFAVLSPHIPPDAYTFNIFVHGWCSIRRIDEAMWTIEEMKRRGFPPS 219

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           + TY  VL+ Y +       +     M  + C  +V+TYT I+         + A +V  
Sbjct: 220 VITYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIMTSLAKCERFEEALSVSH 279

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE-EMVGKGYMPNSTTYNVVIRGLCHT 360
            M + G  P    YN++I +L K   +  A  VF  EM   G   N  TYN +I   C+ 
Sbjct: 280 RMKSSGCKPDTLFYNSLINLLGKSGHLFEASQVFRVEMPMNGVSHNLATYNTMISIFCYY 339

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCD-AGEIERGLELFEKMGSGVCLP-NLD 418
           G  + AL  +  M+   C+P++Q+Y  L+R F    G+ +    L  ++ S   L  +LD
Sbjct: 340 GRDDDALNVLKEMEAQSCKPDIQSYRPLLRLFLSRRGQADTVRHLLSELTSKHNLGLDLD 399

Query: 419 TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           TY +LI  +    +  D + A +L  EMV     PR  T
Sbjct: 400 TYTLLIHGLC---RVGDTVWAYQLFDEMVSSEIAPRSKT 435



 Score = 45.4 bits (106), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 5/149 (3%)

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           N M+ +L K   ++    +  +M G+G +   T     IR L      +  +    +++D
Sbjct: 86  NRMVDLLGKMRQIDQMWELLSDMHGRGLVTVETVAKS-IRRLAGARRWKDVVLLFDKLED 144

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
              E N +T N+L+   C   +IE   E+F  +   +  P+  T+NI +      ++ D+
Sbjct: 145 MGLERNTETMNVLLDVLCKERKIEVAREVFAVLSPHI-PPDAYTFNIFVHGWCSIRRIDE 203

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
            +     + EM  RGF P   T+  VL  
Sbjct: 204 AMWT---IEEMKRRGFPPSVITYTTVLEA 229


>gi|334183891|ref|NP_177483.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806278|sp|Q9FX35.2|PP117_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g73400, mitochondrial; Flags: Precursor
 gi|332197336|gb|AEE35457.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 568

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 119/433 (27%), Positives = 211/433 (48%), Gaps = 31/433 (7%)

Query: 56  LTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAA- 114
           + + L   S+  T  +V +I++RL      A  FF    +   Y+H P +++  ID+ + 
Sbjct: 112 MEKALDESSVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPIAYNEMIDILSS 171

Query: 115 ---RLRDYRTVWTLVHRMKSLSLGPTQKTFAII----------AERYVS-AGKADRAVKI 160
              + + +R V  ++  MK        KT  ++           ERY++   K  +  +I
Sbjct: 172 TKYKNKQFRIVIDMLDYMKR-----NNKTVVLVDVLLEILRKYCERYLTHVQKFAKRKRI 226

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV 220
            +       +  +N+FN +LD LCK   V++   L +  R + K D  ++NV+  GWC V
Sbjct: 227 RVKT-----QPEINAFNMLLDALCKCGLVKEGEALLRRMRHRVKPDANTFNVLFFGWCRV 281

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
           +   KA+++L+EM++ G  P   TY   +  + +AG ++EA   F  M  +   +   T 
Sbjct: 282 RDPKKAMKLLEEMIEAGHKPENFTYCAAIDTFCQAGMVDEAADLFDFMITKGSAVSAPTA 341

Query: 281 TTIVHGFGVVGEIKRARNVFD---GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
            T       + +  +A   F+    M++ G LP V+TY  +I+ +C  + V+ A    +E
Sbjct: 342 KTFALMIVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAEKVDEAYKFLDE 401

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M  KGY P+  TYN  +R LC   + + AL+  GRM +  C P+VQTYN+LI  F +  +
Sbjct: 402 MSNKGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDD 461

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
            +     + +M    C+ +++TY  +I+ +F   ++ +   A  LL E+V++G       
Sbjct: 462 PDGAFNTWTEMDKRDCVQDVETYCAMINGLFDCHRAKE---ACFLLEEVVNKGLKLPYRV 518

Query: 458 FNRVLNGLLLIGN 470
           F+  L  L  +GN
Sbjct: 519 FDSFLMRLSEVGN 531



 Score = 38.9 bits (89), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 1/119 (0%)

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYN 211
           K D A+K++  M E  C  S+ ++N ++ +  +    + A+N + ++ +     DV +Y 
Sbjct: 426 KTDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDGAFNTWTEMDKRDCVQDVETYC 485

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
            + NG     R  +A  +L+E+V++GL      ++  L      G ++   +    MKK
Sbjct: 486 AMINGLFDCHRAKEACFLLEEVVNKGLKLPYRVFDSFLMRLSEVGNLKAIHKVSEHMKK 544


>gi|125540181|gb|EAY86576.1| hypothetical protein OsI_07956 [Oryza sativa Indica Group]
 gi|125582780|gb|EAZ23711.1| hypothetical protein OsJ_07414 [Oryza sativa Japonica Group]
 gi|215768726|dbj|BAH00955.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 500

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 113/399 (28%), Positives = 187/399 (46%), Gaps = 7/399 (1%)

Query: 62  CPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRT 121
           C  +  T  +VD ++ +  +    AL FF        Y H+  + +  +DL  ++R    
Sbjct: 75  CSGIRLTGNIVDTLLFKFGDDWKSALGFFQWAQSRDDYRHTAYACNRMVDLLGKMRQIDQ 134

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
           +W L+  M    L  T +T A    R   A +    V +F  + + G  ++  + N +LD
Sbjct: 135 MWELLSDMHGRGL-VTVETVAKSIRRLAGARRWKDVVLLFDKLEDMGLERNTETMNVLLD 193

Query: 182 LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           +LCKE+K+E A  +F V       D  ++N+  +GWC ++R ++A+  ++EM  RG  P+
Sbjct: 194 VLCKERKIEVAREVFAVLSPHIPPDAYTFNIFVHGWCSIRRIDEAMWTIEEMKRRGFPPS 253

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           + TY  VL+ Y +       +     M  + C  +V+TYT I+         + A +V  
Sbjct: 254 VITYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIMTSLAKCERFEEALSVSH 313

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE-EMVGKGYMPNSTTYNVVIRGLCHT 360
            M + G  P    YN++I +L K   +  A  VF  EM   G   N  TYN +I   C+ 
Sbjct: 314 RMKSSGCKPDTLFYNSLINLLGKSGHLFEASQVFRVEMPMNGVSHNLATYNTMISIFCYY 373

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCD-AGEIERGLELFEKMGSGVCLP-NLD 418
           G  + AL  +  M+   C+P++Q+Y  L+R F    G+ +    L  ++ S   L  +LD
Sbjct: 374 GRDDDALNVLKEMEAQSCKPDIQSYRPLLRLFLSRRGQADTVRHLLSELTSKHNLGLDLD 433

Query: 419 TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           TY +LI  +    +  D + A +L  EMV     PR  T
Sbjct: 434 TYTLLIHGLC---RVGDTVWAYQLFDEMVSSEIAPRSKT 469



 Score = 45.1 bits (105), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 5/149 (3%)

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           N M+ +L K   ++    +  +M G+G +   T     IR L      +  +    +++D
Sbjct: 120 NRMVDLLGKMRQIDQMWELLSDMHGRGLVTVETVAKS-IRRLAGARRWKDVVLLFDKLED 178

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
              E N +T N+L+   C   +IE   E+F  +   +  P+  T+NI +      ++ D+
Sbjct: 179 MGLERNTETMNVLLDVLCKERKIEVAREVFAVLSPHI-PPDAYTFNIFVHGWCSIRRIDE 237

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
            +     + EM  RGF P   T+  VL  
Sbjct: 238 AMWT---IEEMKRRGFPPSVITYTTVLEA 263


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 111/389 (28%), Positives = 200/389 (51%), Gaps = 6/389 (1%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           +  S++  ++   RL   R    L+ RM+     P   ++  I + Y   G+  + V++ 
Sbjct: 109 NTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLV 168

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCL 219
             M   G + +L ++++I+ LLCK  KV +   + +    RG F   VI Y  + +G+C 
Sbjct: 169 KEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVI-YTTLIDGFCK 227

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
           +  T  A ++  EM  R + P+   ++ ++ G   +G++ EA + F EM K+  E D VT
Sbjct: 228 LGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVT 287

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           YT ++ G+  +GE+K+A  + + MV  G+ P+V TY A+   LCK   ++ A  +  EM 
Sbjct: 288 YTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMC 347

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            KG   N +TYN ++ GLC  G + +A++ +  MK+    P+  TY  L+  +   GE+ 
Sbjct: 348 RKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMV 407

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
           +  EL  +M      P + T+N+L++ + +  K +D     +LL  M+++G MP   T+N
Sbjct: 408 KARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLED---GERLLKWMLEKGIMPNAATYN 464

Query: 460 RVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            ++    +  N  ++ EI R     G +P
Sbjct: 465 SIMKQYCIRNNMRISTEIYRGMCAQGVVP 493



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 118/444 (26%), Positives = 207/444 (46%), Gaps = 51/444 (11%)

Query: 88  HFFNILSY-HPTYAHSPSSFD---HAIDLAARLRDYRTVWT-LVHRMKSLSLGPTQKTFA 142
           HF   L Y +  +   P  FD     +  A  L + R  +  L++   +LS G       
Sbjct: 23  HFVERLIYTYKDWGSDPHVFDVFFQVLVEAGLLNEARKFFDKLLNYGVALSAGSCNLYLT 82

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK 202
            ++ +    G     +K+F    + G   +  S+N +++ L +  K+ +A++L  + R +
Sbjct: 83  CLSSKRDMLG---MVLKVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHL--LMRME 137

Query: 203 FKA---DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV----------- 248
           FK    DV+SY  I +G+C V    K ++++KEM  +GL PNL TY+ +           
Sbjct: 138 FKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVV 197

Query: 249 ------------------------LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
                                   + G+ + G  + A++ F EM+ R+   D + ++ ++
Sbjct: 198 EGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALI 257

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            G    G++  A  +F+ M+  G  P   TY A+I   CK   ++ A  +  +MV  G  
Sbjct: 258 CGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLT 317

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           PN  TY  +  GLC +GE++ A E +  M     + N+ TYN ++   C AG I + ++L
Sbjct: 318 PNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKL 377

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
            E+M      P+  TY  L+ + +   K+ +++ A +LL EM+DRG  P   TFN ++NG
Sbjct: 378 MEEMKEAGLHPDTITYTTLMDAYY---KTGEMVKARELLREMLDRGLQPTVVTFNVLMNG 434

Query: 465 LLLIGNQGLAKEILRLQSRCGRLP 488
           L + G     + +L+     G +P
Sbjct: 435 LCMSGKLEDGERLLKWMLEKGIMP 458



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 175/351 (49%), Gaps = 4/351 (1%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID   +L + +  + L   M++  + P    F+ +      +GK   A K+F  M + G 
Sbjct: 222 IDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGF 281

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
                ++  ++D  CK  +++KA+ L  ++ +     +V++Y  +A+G C     + A E
Sbjct: 282 EPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANE 341

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           +L EM  +GL  N++TYN ++ G  +AG I +A +   EMK+     D +TYTT++  + 
Sbjct: 342 LLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYY 401

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             GE+ +AR +   M++ G+ P+V T+N ++  LC    +E+   + + M+ KG MPN+ 
Sbjct: 402 KTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAA 461

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           TYN +++  C    M  + E    M      P+  TYNILI+  C A  ++    L ++M
Sbjct: 462 TYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEM 521

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
                     +YN LI   F RKK   LL A +L  EM   G +     +N
Sbjct: 522 VEKRFNLTASSYNALIKGFFKRKK---LLEARQLFEEMRREGLVASAEIYN 569



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 97/398 (24%), Positives = 175/398 (43%), Gaps = 39/398 (9%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S+   ID    + + + V  LV  M+   L P   T++ I      +GK     K+   M
Sbjct: 147 SYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREM 206

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF---------------------------- 196
            + G       + T++D  CK    + AY LF                            
Sbjct: 207 MKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKV 266

Query: 197 --------KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
                   ++ +  F+ D ++Y  + +G+C +    KA  +  +MV  GL PN+ TY  +
Sbjct: 267 VEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTAL 326

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
             G  ++G+++ A     EM ++  ++++ TY TIV+G    G I +A  + + M   G+
Sbjct: 327 ADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGL 386

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
            P   TY  ++    K   +  A  +  EM+ +G  P   T+NV++ GLC +G++E    
Sbjct: 387 HPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGER 446

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
            +  M +    PN  TYN +++ +C    +    E++  M +   +P+ +TYNILI    
Sbjct: 447 LLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKG-- 504

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
              K+ ++  A  L  EMV++ F     ++N ++ G  
Sbjct: 505 -HCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFF 541



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 156/302 (51%), Gaps = 1/302 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L + M      P + T+  + + Y   G+  +A  +   M + G   ++ ++  + D LC
Sbjct: 272 LFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLC 331

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  +++ A  L  ++ R   + ++ +YN I NG C      +A+++++EM + GL+P+  
Sbjct: 332 KSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTI 391

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY  ++  Y++ G++ +A     EM  R  +  VVT+  +++G  + G+++    +   M
Sbjct: 392 TYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWM 451

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           +  G++P+ ATYN++++  C ++++  +  ++  M  +G +P+S TYN++I+G C    M
Sbjct: 452 LEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNM 511

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A      M +        +YN LI+ F    ++    +LFE+M     + + + YN+ 
Sbjct: 512 KEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQLFEEMRREGLVASAEIYNLF 571

Query: 424 IS 425
           + 
Sbjct: 572 VD 573



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 158/304 (51%), Gaps = 1/304 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   ID   +L + +  + L ++M  + L P   T+  +A+    +G+ D A ++   M
Sbjct: 287 TYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEM 346

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRT 223
              G + +++++NTI++ LCK   + +A  L +  +      D I+Y  + + +      
Sbjct: 347 CRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEM 406

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            KA E+L+EM+DRGL P + T+N+++ G   +G++E+  R    M ++    +  TY +I
Sbjct: 407 VKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSI 466

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +  + +   ++ +  ++ GM   GV+P   TYN +I+  CK  +++ A  + +EMV K +
Sbjct: 467 MKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRF 526

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
              +++YN +I+G     ++  A +    M+ +    + + YN+ +    + G +E  LE
Sbjct: 527 NLTASSYNALIKGFFKRKKLLEARQLFEEMRREGLVASAEIYNLFVDMNYEEGNMETTLE 586

Query: 404 LFEK 407
           L ++
Sbjct: 587 LCDE 590



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 110/218 (50%), Gaps = 1/218 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  MK   L P   T+  + + Y   G+  +A ++   M + G + ++ +FN +++ LC
Sbjct: 377 LMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLC 436

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
              K+E    L K +       +  +YN I   +C+      + E+ + M  +G+ P+  
Sbjct: 437 MSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSN 496

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYNI++KG+ +A  ++EAW    EM +++  +   +Y  ++ GF    ++  AR +F+ M
Sbjct: 497 TYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQLFEEM 556

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
              G++ S   YN  + +  ++ ++E  + + +E + K
Sbjct: 557 RREGLVASAEIYNLFVDMNYEEGNMETTLELCDEAIEK 594


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 114/410 (27%), Positives = 188/410 (45%), Gaps = 14/410 (3%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAA--RLRDYRTVWTLVHRMKSLSLGPTQKTFAI 143
           A  F N LS   +Y   P +  +   L      + +  V  L   M   +  P + TF +
Sbjct: 265 AREFLNRLS---SYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDM 321

Query: 144 IAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF 203
           +   +   G  +RA+++   M  HGC  +    N +++ +CK+ +V+ A+       G +
Sbjct: 322 LVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNM-GSY 380

Query: 204 --KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
               D ISY  +  G C  +R   A E+LKEMV +   PN  T+N  +    + G IE+A
Sbjct: 381 GCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQA 440

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
                +M +  CE+++VTY  +V+GF V G +  A  +F  M      P+  TY  ++  
Sbjct: 441 TMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSM---PCKPNTITYTTLLTG 497

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           LC  + ++ A  +  EM+ K   PN  T+NV++   C  G M+ A+E V +M +  C PN
Sbjct: 498 LCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPN 557

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
           + TYN L+         E  LEL   + S    P++ TY+ +I    V  + D +  A K
Sbjct: 558 LITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIG---VLSREDRVEEAIK 614

Query: 442 LLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           +   + D G  P+   +N++L  L    N   A +        G +P + 
Sbjct: 615 MFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNEL 664



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 175/358 (48%), Gaps = 10/358 (2%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           +L+  M      P+  T+ ++ E    +    +A+++   M   GC  ++ ++N I++ +
Sbjct: 197 SLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGM 256

Query: 184 CKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           C+E +V+ A   L ++    F+ D +SY  +  G C  KR     E+  EM+++   PN 
Sbjct: 257 CREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNE 316

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            T++++++ + R G +E A +   +M    C  +      +++     G +  A    + 
Sbjct: 317 VTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNN 376

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M + G  P   +Y  +++ LC+ +  E+A  + +EMV K   PN  T+N  I  LC  G 
Sbjct: 377 MGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGL 436

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           +E+A   + +M +  CE N+ TYN L+  FC  G ++  LELF  M    C PN  TY  
Sbjct: 437 IEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP---CKPNTITYTT 493

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           L++ +   ++ D    A +LL EM+ +   P   TFN +++       +GL  E + L
Sbjct: 494 LLTGLCNAERLD---AAAELLAEMLQKDCAPNVVTFNVLVS---FFCQKGLMDEAIEL 545



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/360 (28%), Positives = 162/360 (45%), Gaps = 9/360 (2%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           + S+ + P   T+  I       G+   A+ +   M   GC+ S+ ++  +L+ +CK   
Sbjct: 167 IASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTG 226

Query: 189 VEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
             +A  +    R K    ++++YNVI NG C   R + A E L  +   G  P+  +Y  
Sbjct: 227 FGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTT 286

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           VLKG   A + E+    F EM ++ C  + VT+  +V  F   G ++RA  V + M   G
Sbjct: 287 VLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHG 346

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
              +    N +I  +CK+  V++A      M   G  P++ +Y  V++GLC     E A 
Sbjct: 347 CAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAK 406

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           E +  M    C PN  T+N  I   C  G IE+   L E+M    C  N+ TYN L++  
Sbjct: 407 ELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGF 466

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR--LQSRCG 485
            V+ + D  L   +L   M  +   P   T+  +L GL        A E+L   LQ  C 
Sbjct: 467 CVQGRVDSAL---ELFYSMPCK---PNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCA 520



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 183/379 (48%), Gaps = 9/379 (2%)

Query: 103 PSSFDHAIDLAARLRD--YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           PS   + + L A  +   +     ++  M++    P   T+ +I       G+ D A + 
Sbjct: 209 PSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREF 268

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCL 219
              +  +G +    S+ T+L  LC  K+ E    LF ++       + ++++++   +C 
Sbjct: 269 LNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCR 328

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
                +A++VL++M   G   N T  NIV+    + G++++A++F   M    C  D ++
Sbjct: 329 GGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTIS 388

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           YTT++ G       + A+ +   MV     P+  T+N  I +LC+K  +E A ++ E+M 
Sbjct: 389 YTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMS 448

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             G   N  TYN ++ G C  G ++ ALE    M    C+PN  TY  L+   C+A  ++
Sbjct: 449 EHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP---CKPNTITYTTLLTGLCNAERLD 505

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
              EL  +M    C PN+ T+N+L+ S F +K   D  +  +L+ +M++ G  P   T+N
Sbjct: 506 AAAELLAEMLQKDCAPNVVTFNVLV-SFFCQKGLMDEAI--ELVEQMMEHGCTPNLITYN 562

Query: 460 RVLNGLLLIGNQGLAKEIL 478
            +L+G+    N   A E+L
Sbjct: 563 TLLDGITKDCNSEEALELL 581



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 160/333 (48%), Gaps = 9/333 (2%)

Query: 90  FNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWT----LVHRMKSLSLGPTQKTFAIIA 145
           F  L+   +Y  SP +  +   L    R  R  W     L+  M   +  P + TF    
Sbjct: 371 FQFLNNMGSYGCSPDTISYTTVLKGLCRAER--WEDAKELLKEMVRKNCPPNEVTFNTFI 428

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA 205
                 G  ++A  +   M EHGC  ++ ++N +++  C + +V+ A  LF  +    K 
Sbjct: 429 CILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELF--YSMPCKP 486

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           + I+Y  +  G C  +R + A E+L EM+ +   PN+ T+N+++  + + G ++EA    
Sbjct: 487 NTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELV 546

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
            +M +  C  +++TY T++ G       + A  +  G+V+ GV P + TY+++I VL ++
Sbjct: 547 EQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSRE 606

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
           D VE AI +F  +   G  P +  YN ++  LC     + A++F   M  + C PN  TY
Sbjct: 607 DRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTY 666

Query: 386 NILIRYFCDAGEIERGLELFEKMGS-GVCLPNL 417
             LI    +   ++   +L  ++ S GV   NL
Sbjct: 667 ITLIEGLANEDFLKETRDLLRELCSRGVLNKNL 699



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 137/301 (45%), Gaps = 41/301 (13%)

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           C   RT+ A  VL+     G   ++  YN ++ GY R GQ++ A R    M       D 
Sbjct: 120 CRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMPVAP---DA 176

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
            TYT I+ G    G +  A ++ D M++ G  PSV TY  +++ +CK      A+ V +E
Sbjct: 177 YTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDE 236

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR------------------------- 372
           M  KG  PN  TYNV+I G+C  G ++ A EF+ R                         
Sbjct: 237 MRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKR 296

Query: 373 ----------MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
                     M +  C PN  T+++L+R+FC  G +ER +++ E+M    C  N    NI
Sbjct: 297 WEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNI 356

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           +I+++  + + DD   A + L  M   G  P   ++  VL GL        AKE+L+   
Sbjct: 357 VINTICKQGRVDD---AFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMV 413

Query: 483 R 483
           R
Sbjct: 414 R 414



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 168/373 (45%), Gaps = 8/373 (2%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII 144
           +A+     +S H   A++ +  +  I+   +       +  ++ M S    P   ++  +
Sbjct: 334 RAIQVLEQMSGHGCAANT-TLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTV 392

Query: 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKF 203
            +    A + + A ++   M    C  +  +FNT + +LC++  +E+A  L  ++     
Sbjct: 393 LKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGC 452

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
           + ++++YN + NG+C+  R + ALE+   M      PN  TY  +L G   A +++ A  
Sbjct: 453 EVNIVTYNALVNGFCVQGRVDSALELFYSM---PCKPNTITYTTLLTGLCNAERLDAAAE 509

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
              EM ++ C  +VVT+  +V  F   G +  A  + + M+  G  P++ TYN ++  + 
Sbjct: 510 LLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGIT 569

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
           K  + E A+ +   +V  G  P+  TY+ +I  L     +E A++    ++D    P   
Sbjct: 570 KDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAV 629

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
            YN ++   C     +  ++ F  M S  C+PN  TY  LI  +      D L     LL
Sbjct: 630 IYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGL---ANEDFLKETRDLL 686

Query: 444 IEMVDRGFMPRKF 456
            E+  RG + +  
Sbjct: 687 RELCSRGVLNKNL 699



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 86/194 (44%), Gaps = 6/194 (3%)

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
           RA  + D   + G  P V     +I+ LC++    +A  V       G   +   YN ++
Sbjct: 92  RAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLV 151

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
            G C  G+++ A   +  M      P+  TY  +IR  CD G +   L L + M    C 
Sbjct: 152 AGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQ 208

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           P++ TY +L+ ++    KS     A ++L EM  +G  P   T+N ++NG+   G    A
Sbjct: 209 PSVVTYTVLLEAVC---KSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDA 265

Query: 475 KEILRLQSRCGRLP 488
           +E L   S  G  P
Sbjct: 266 REFLNRLSSYGFQP 279


>gi|357167837|ref|XP_003581356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Brachypodium distachyon]
          Length = 524

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 105/347 (30%), Positives = 173/347 (49%), Gaps = 6/347 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG-CRQSLNSFNTILDLLCKEKKVEKAYN 194
           P   T+  +   + + G+    ++I   M E G       ++ T++   CK  KVE A  
Sbjct: 145 PNAVTYNTVIAGFCARGRVQAGIEIMREMRERGGIAPDKYTYATVISGWCKVGKVEDATK 204

Query: 195 LFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
           +F   +  GK + + + YN +  G+C       AL    EMVDRG++  + TYN+ +   
Sbjct: 205 VFDEMLTEGKVEPNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYNLFVHTL 264

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
           F  G+  EA     EM ++    D  TY  +++G+   G+ K+A  +F+ MV  G+  +V
Sbjct: 265 FMEGRAAEAHALVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRATV 324

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            TY ++I  L  K  V+    +F + V +G  P+   YN +I   C  G+M+RA E +G 
Sbjct: 325 VTYTSLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSHCTGGDMDRAFEIMGE 384

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           M+     P+  TYN L+R  C  G ++    L E+M      P+L +YN LIS   ++  
Sbjct: 385 MEKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQPDLVSYNTLISGYSMKGD 444

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
             D   A K+  EM+ +GF P   T+N ++ GL L G  G A+++++
Sbjct: 445 IKD---AVKVRDEMMGKGFNPTLLTYNAMIKGLCLNGQGGDAEDLVK 488



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 116/413 (28%), Positives = 191/413 (46%), Gaps = 14/413 (3%)

Query: 79  LWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLG-PT 137
           L+  AL A    + L+  P  A +PS     +  +   R + T  +L  R+KSLSL  PT
Sbjct: 26  LFKSALSADPALSPLAVLPHLAATPSLPHLLLTASVAGRPHTTSLSLYSRLKSLSLPIPT 85

Query: 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK 197
                ++     S+     A  +F  +       S  +FN +L  LC   K  +A  L  
Sbjct: 86  ASLHPLL-----SSLPPAPAFVLFADIFRLRLPLSTTTFNIMLRHLCTAGKPVRALELL- 139

Query: 198 VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR-GLNPNLTTYNIVLKGYFRAG 256
             R     + ++YN +  G+C   R    +E+++EM +R G+ P+  TY  V+ G+ + G
Sbjct: 140 --RQMPSPNAVTYNTVIAGFCARGRVQAGIEIMREMRERGGIAPDKYTYATVISGWCKVG 197

Query: 257 QIEEAWRFFLEM-KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
           ++E+A + F EM  + K E + V Y  ++ G+   G ++ A      MV+ GV  +VATY
Sbjct: 198 KVEDATKVFDEMLTEGKVEPNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATY 257

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           N  +  L  +     A  + EEM  KG  P++ TYN++I G C  G+ ++A++    M  
Sbjct: 258 NLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVG 317

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
                 V TY  LI      G ++    LF         P+L  YN LI+S        D
Sbjct: 318 KGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSHCT---GGD 374

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           +  A +++ EM  +   P   T+N ++ GL L+G    A+ ++   ++ G  P
Sbjct: 375 MDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQP 427



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 80/242 (33%), Positives = 129/242 (53%), Gaps = 3/242 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           LV  M    L P   T+ I+   Y   GK  +A+K+F  M   G R ++ ++ +++  L 
Sbjct: 276 LVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALS 335

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            +  V++   LF    R   + D+  YN + N  C     ++A E++ EM  + + P+  
Sbjct: 336 MKGMVQETDRLFNDAVRRGIRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKKRITPDDV 395

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN +++G    G+++EA     EM KR  + D+V+Y T++ G+ + G+IK A  V D M
Sbjct: 396 TYNTLMRGLCLLGRLDEARGLIEEMTKRGIQPDLVSYNTLISGYSMKGDIKDAVKVRDEM 455

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           +  G  P++ TYNAMI+ LC      +A  + +EMVG G  P+ +TY  +I GL  T E 
Sbjct: 456 MGKGFNPTLLTYNAMIKGLCLNGQGGDAEDLVKEMVGNGITPDDSTYISLIEGL--TTED 513

Query: 364 ER 365
           ER
Sbjct: 514 ER 515



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 130/255 (50%), Gaps = 1/255 (0%)

Query: 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF 196
           T  T+ +        G+A  A  +   M E G      ++N +++  CKE K +KA  +F
Sbjct: 253 TVATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMF 312

Query: 197 KVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
           +V  GK  +A V++Y  + +   +     +   +  + V RG+ P+L  YN ++  +   
Sbjct: 313 EVMVGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSHCTG 372

Query: 256 GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
           G ++ A+    EM+K++   D VTY T++ G  ++G +  AR + + M   G+ P + +Y
Sbjct: 373 GDMDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQPDLVSY 432

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           N +I     K  +++A+ V +EM+GKG+ P   TYN +I+GLC  G+   A + V  M  
Sbjct: 433 NTLISGYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAMIKGLCLNGQGGDAEDLVKEMVG 492

Query: 376 DECEPNVQTYNILIR 390
           +   P+  TY  LI 
Sbjct: 493 NGITPDDSTYISLIE 507



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 83/183 (45%), Gaps = 9/183 (4%)

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           S  T+N M++ LC       A+ +  +M      PN+ TYN VI G C  G ++  +E +
Sbjct: 115 STTTFNIMLRHLCTAGKPVRALELLRQMPS----PNAVTYNTVIAGFCARGRVQAGIEIM 170

Query: 371 GRMKD-DECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISSMF 428
             M++     P+  TY  +I  +C  G++E   ++F++M   G   PN   YN LI    
Sbjct: 171 REMRERGGIAPDKYTYATVISGWCKVGKVEDATKVFDEMLTEGKVEPNAVMYNALIGGYC 230

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
                 +L VA +   EMVDRG      T+N  ++ L + G    A  ++      G  P
Sbjct: 231 ---DQGNLEVALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAP 287

Query: 489 RQF 491
             F
Sbjct: 288 DAF 290


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 138/481 (28%), Positives = 225/481 (46%), Gaps = 36/481 (7%)

Query: 25  LTTTSPAPLPPAAADPAALASLILT-----STDPRTLTQTLH-------CPSLHWTPQLV 72
           L   + AP   A     ALA  +       +  PR L+ T H       C +    P+L 
Sbjct: 74  LAALARAPSSAACRSGPALAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELA 133

Query: 73  DQIIKRLWNHALKALHFFNILSYHPTYAHSPSS-FDHAIDLAARLRDYRTVWTLVHRMKS 131
                +L    L+      I++ H       +   D A+D+            L+HR   
Sbjct: 134 LAFFGQLLRTGLRV---NIIIANHLLEGFCEAKRTDEALDI------------LLHRTPE 178

Query: 132 LSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG--CRQSLNSFNTILDLLCKEKKV 189
           L   P   +++I+ +     GK+ +A  +   M E G  C  ++ ++NT++D   KE  V
Sbjct: 179 LGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDV 238

Query: 190 EKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
            KA +LFK  V RG    D+++YN + +  C  +  +KA   L++MV++ + PN  TYN 
Sbjct: 239 NKACDLFKEMVQRG-IPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNN 297

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ GY   GQ +EA R F EM++     DVVT + ++      G+IK AR+VFD M   G
Sbjct: 298 LIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKG 357

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
             P V +YN M+     K  + +   +F+ M+G G  P+  T+NV+I+   + G +++A+
Sbjct: 358 QNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAM 417

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
                M+D   +P+V TY  +I   C  G+++  +E F +M      P+   YN LI   
Sbjct: 418 IIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQG- 476

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
           F    S  LL A +L+ E+++ G       F+ ++N L  +G    A+ I  L    G  
Sbjct: 477 FCTHGS--LLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLH 534

Query: 488 P 488
           P
Sbjct: 535 P 535



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 108/403 (26%), Positives = 182/403 (45%), Gaps = 49/403 (12%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  +    + R        + +M +  + P   T+  +   Y S G+   AV++F  M
Sbjct: 259 TYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM 318

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFK-ADVISYNVIANGW----CL 219
             H     + + + ++  LCK  K+++A ++F     K +  DV SYN++ NG+    CL
Sbjct: 319 RRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCL 378

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
           V  T    ++   M+  G+ P+  T+N+++K Y   G +++A   F EM+    + DVVT
Sbjct: 379 VDMT----DLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVT 434

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV------------------ 321
           Y T++     +G++  A   F+ M++ GV P    YN +IQ                   
Sbjct: 435 YRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIM 494

Query: 322 -----------------LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
                            LCK   V +A  +F+  V  G  P++  YN+++ G C  G+ME
Sbjct: 495 NNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKME 554

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
           +AL     M     EPNV  Y  L+  +C  G I+ GL LF +M      P+   Y+I+I
Sbjct: 555 KALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIII 614

Query: 425 SSMFVRKKSDDLLVAGKLLI-EMVDRGFMPRKFTFNRVLNGLL 466
             +F   ++    V  K+   EM + G      T+N VL GL 
Sbjct: 615 DGLFEAGRT----VPAKMKFHEMTESGIAMDICTYNIVLRGLF 653



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 99/399 (24%), Positives = 183/399 (45%), Gaps = 12/399 (3%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAA--RLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           KA+  FN +  H      P    +   +AA  R+          ++M    + P +  + 
Sbjct: 415 KAMIIFNEMRDHGV---KPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYN 471

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV-FRG 201
            + + + + G   +A ++   +  +G    +  F++I++ LCK  +V  A N+F +    
Sbjct: 472 CLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNV 531

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
               D + YN++ +G+CLV +  KAL V   MV  G+ PN+  Y  ++ GY + G+I+E 
Sbjct: 532 GLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEG 591

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
              F EM +R  +   + Y+ I+ G    G    A+  F  M   G+   + TYN +++ 
Sbjct: 592 LSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRG 651

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           L K    + AI +F+E+       N  T N +I G+  T  +E A +    +      P+
Sbjct: 652 LFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPS 711

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
           V TY+I+I      G +E   ++F  M +  C PN    N ++  +    K ++++ AG 
Sbjct: 712 VVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELL---KKNEIVRAGA 768

Query: 442 LLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
            L ++ +R F     T   +++   L  ++G  +E +R 
Sbjct: 769 YLSKIDERNFSLEHLTAMLLVD---LFSSKGTCREQIRF 804



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 162/355 (45%), Gaps = 6/355 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   ++ I+   Y + G       +F  M   G      +FN ++        ++KA  +
Sbjct: 360 PDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMII 419

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F   R    K DV++Y  +    C + + + A+E   +M+D+G+ P+   YN +++G+  
Sbjct: 420 FNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCT 479

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G + +A     E+      +D+V +++I++    +G +  A+N+FD  VN G+ P    
Sbjct: 480 HGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVV 539

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN ++   C    +E A+ VF+ MV  G  PN   Y  ++ G C  G ++  L     M 
Sbjct: 540 YNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREML 599

Query: 375 DDECEPNVQTYNILIRYFCDAGE-IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
               +P+   Y+I+I    +AG  +   ++  E   SG+ + ++ TYNI++  +F  +  
Sbjct: 600 QRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAM-DICTYNIVLRGLFKNRCF 658

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           D+ +    L  E+          T N +++G+        AK++    SR   +P
Sbjct: 659 DEAIF---LFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVP 710


>gi|11120809|gb|AAG30989.1|AC012396_25 hypothetical protein [Arabidopsis thaliana]
          Length = 466

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 119/433 (27%), Positives = 211/433 (48%), Gaps = 31/433 (7%)

Query: 56  LTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAA- 114
           + + L   S+  T  +V +I++RL      A  FF    +   Y+H P +++  ID+ + 
Sbjct: 10  MEKALDESSVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPIAYNEMIDILSS 69

Query: 115 ---RLRDYRTVWTLVHRMKSLSLGPTQKTFAII----------AERYVS-AGKADRAVKI 160
              + + +R V  ++  MK        KT  ++           ERY++   K  +  +I
Sbjct: 70  TKYKNKQFRIVIDMLDYMKR-----NNKTVVLVDVLLEILRKYCERYLTHVQKFAKRKRI 124

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV 220
            +       +  +N+FN +LD LCK   V++   L +  R + K D  ++NV+  GWC V
Sbjct: 125 RVKT-----QPEINAFNMLLDALCKCGLVKEGEALLRRMRHRVKPDANTFNVLFFGWCRV 179

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
           +   KA+++L+EM++ G  P   TY   +  + +AG ++EA   F  M  +   +   T 
Sbjct: 180 RDPKKAMKLLEEMIEAGHKPENFTYCAAIDTFCQAGMVDEAADLFDFMITKGSAVSAPTA 239

Query: 281 TTIVHGFGVVGEIKRARNVFD---GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
            T       + +  +A   F+    M++ G LP V+TY  +I+ +C  + V+ A    +E
Sbjct: 240 KTFALMIVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAEKVDEAYKFLDE 299

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M  KGY P+  TYN  +R LC   + + AL+  GRM +  C P+VQTYN+LI  F +  +
Sbjct: 300 MSNKGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDD 359

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
            +     + +M    C+ +++TY  +I+ +F   ++ +   A  LL E+V++G       
Sbjct: 360 PDGAFNTWTEMDKRDCVQDVETYCAMINGLFDCHRAKE---ACFLLEEVVNKGLKLPYRV 416

Query: 458 FNRVLNGLLLIGN 470
           F+  L  L  +GN
Sbjct: 417 FDSFLMRLSEVGN 429



 Score = 38.9 bits (89), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 86/224 (38%), Gaps = 38/224 (16%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRT--VWTLVHRMKSLSLGPTQKTFA 142
           +A   F+ +    +   +P++   A+ + A  ++ +    + L+ RM S    P   T+ 
Sbjct: 219 EAADLFDFMITKGSAVSAPTAKTFALMIVALAKNDKAEECFELIGRMISTGCLPDVSTYK 278

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA---------- 192
            + E    A K D A K    M   G    + ++N  L +LC+ +K ++A          
Sbjct: 279 DVIEGMCMAEKVDEAYKFLDEMSNKGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVES 338

Query: 193 --------YN-LFKVF------RGKFKA-----------DVISYNVIANGWCLVKRTNKA 226
                   YN L  +F       G F             DV +Y  + NG     R  +A
Sbjct: 339 RCAPSVQTYNMLISMFFEMDDPDGAFNTWTEMDKRDCVQDVETYCAMINGLFDCHRAKEA 398

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
             +L+E+V++GL      ++  L      G ++   +    MKK
Sbjct: 399 CFLLEEVVNKGLKLPYRVFDSFLMRLSEVGNLKAIHKVSEHMKK 442


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 185/371 (49%), Gaps = 8/371 (2%)

Query: 83  ALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           ALK L      S  P        ++  ID   + +     + L   M +  + P   T++
Sbjct: 134 ALKLLRMIEDRSTRPNVV----MYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYS 189

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RG 201
            +   +  AG+   A  +   M       ++ ++  ++D LCKE KV++A NL  V  + 
Sbjct: 190 TLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKE 249

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
             K +V+SYN + +G+CL+     A ++   MV +G+NPN+ +YNI++    ++ +++EA
Sbjct: 250 GVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEA 309

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
                E+  +    + VTY++++ GF  +G I  A ++   M + G    V TY +++  
Sbjct: 310 MNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDA 369

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           LCK  +++ A  +F +M  +G  PN  TY  +I GLC  G  + A +    +    C  N
Sbjct: 370 LCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRIN 429

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
           V TYN++I   C  G ++  L +  KM    C+P+  T+ I+I S+F + ++D    A K
Sbjct: 430 VWTYNVMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIIIRSLFEKDQNDK---AEK 486

Query: 442 LLIEMVDRGFM 452
           LL EM+ +  +
Sbjct: 487 LLHEMIAKDLL 497



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 194/408 (47%), Gaps = 33/408 (8%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
            F+  +    +++ Y T  +L  +M+   + P   T  I+   +   G+   +  +   +
Sbjct: 12  EFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLGKI 71

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
            + G + +  + NT++  LC + +V+K+ +   KV    F+ D +SY  + NG C +  T
Sbjct: 72  LKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGET 131

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
             AL++L+ + DR   PN+  YN ++ G  +   + EA+  + EM  R    +V+TY+T+
Sbjct: 132 RSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTL 191

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++GF + G++  A  + + M+   + P+V TY  ++  LCK+  V+ A  +   M  +G 
Sbjct: 192 IYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGV 251

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN  +YN ++ G C  GE++ A +    M      PNV +YNI+I   C +  ++  + 
Sbjct: 252 KPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMN 311

Query: 404 LFEKMGSGVCLPNLDTYNILIS----------------SMFVRKKSDDLLV--------- 438
           L  ++     +PN  TY+ LI                  M+ R +  D++          
Sbjct: 312 LLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALC 371

Query: 439 -------AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
                  A  L ++M +RG  P K+T+  +++GL   G    A+++ +
Sbjct: 372 KNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQ 419



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 132/285 (46%), Gaps = 3/285 (1%)

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           ++ +N I      +K    A+ + K+M  +G+ P+L T NI++  +   GQ+  ++    
Sbjct: 10  IMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLG 69

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           ++ K   + + +T  T++ G  + GE+K++ +  D +V  G      +Y  ++  LCK  
Sbjct: 70  KILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIG 129

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
              +A+ +   +  +   PN   YN +I GLC    +  A +    M      PNV TY+
Sbjct: 130 ETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYS 189

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            LI  FC AG++     L  +M      PN+ TY IL+ ++    K  +   A  LL  M
Sbjct: 190 TLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKE---AKNLLAVM 246

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
              G  P   ++N +++G  LIG    AK++     + G  P  +
Sbjct: 247 TKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVY 291



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 120/249 (48%), Gaps = 3/249 (1%)

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           P +  +N ++    +      A   F +M+ +  E D+ T   +++ F  +G++  +  V
Sbjct: 8   PPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTV 67

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
              ++  G  P+  T N +++ LC K  V+ ++   +++V +G+  +  +Y  ++ GLC 
Sbjct: 68  LGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCK 127

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419
            GE   AL+ +  ++D    PNV  YN +I   C    +    +L+ +M +    PN+ T
Sbjct: 128 IGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVIT 187

Query: 420 YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           Y+ LI    +   +  L+ A  LL EM+ +   P  +T+  +++ L   G    AK +L 
Sbjct: 188 YSTLIYGFCL---AGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLA 244

Query: 480 LQSRCGRLP 488
           + ++ G  P
Sbjct: 245 VMTKEGVKP 253


>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
 gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
          Length = 796

 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 121/437 (27%), Positives = 200/437 (45%), Gaps = 47/437 (10%)

Query: 92  ILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSA 151
           I    PTY    S+F       ARL   +    +V  M +    P  +T+ ++A     A
Sbjct: 274 IAPTQPTYNTLVSAF-------ARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQA 326

Query: 152 GKADRA------------------------------------VKIFLSMHEHGCRQSLNS 175
           GK D A                                    +++   M + G + +L +
Sbjct: 327 GKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVT 386

Query: 176 FNTILDLLCKEKKVEKAY-NLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
            N ++  LCKE K+E+A   L K+       DVI+YN + + +C      KA  ++ EMV
Sbjct: 387 HNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMV 446

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
            +GL  +  T N VL    +  + E+A        +R    D V+Y T++  +      +
Sbjct: 447 GKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPE 506

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
            A  ++D M+   ++PS++TYN +I+ LC+ + ++ AI    E+V KG +P+ TTYN++I
Sbjct: 507 PALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIII 566

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
              C  G++E A  F  +M ++  +P+V T N L+   C  G++++ L+LFE        
Sbjct: 567 HAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKK 626

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
            ++ TYN LI SM    K  D+  A     +M  +G  P  FT+N VL+ L   G    A
Sbjct: 627 VDVITYNTLIQSMC---KVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEA 683

Query: 475 KEILRLQSRCGRLPRQF 491
             +L   +  G+L + F
Sbjct: 684 HNMLHKLADSGKLSQSF 700



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 172/347 (49%), Gaps = 5/347 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+ RMK   + PTQ T+  +   +   G   +A K+  SM  +G    L ++N +   LC
Sbjct: 265 LLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLC 324

Query: 185 KEKKVEKAYNLFKVFRGKFKA--DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           +  KV++A+ L         A  DV++YN + +     + ++ AL +L+EM D+G+ P L
Sbjct: 325 QAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTL 384

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            T+NIV+K   + G++EEA     ++ +     DV+TY T++  +   G + +A  + D 
Sbjct: 385 VTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDE 444

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           MV  G+     T N ++  LCK    E+A  +      +G++P+  +Y  V+        
Sbjct: 445 MVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYN 504

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
            E AL    +M + +  P++ TYN LI+  C    ++  ++   ++     +P+  TYNI
Sbjct: 505 PEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNI 564

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
           +I +     K  DL  A +   +MV+  F P   T N ++NGL L G
Sbjct: 565 IIHAYC---KEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHG 608



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 150/328 (45%), Gaps = 9/328 (2%)

Query: 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG----KFKADVISYNVIANGWCLVKRT 223
           G R SL + N +L  L +        +L  VFR     +   +  ++N++ +  C     
Sbjct: 166 GVRPSLQAANAVLSALSRSPSTLPQASL-DVFRSLIELRLHPNHYTFNLLVHTHCSKGTL 224

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
             AL  L  M   GL+P+  TYN +L  + R G + EA      MK+        TY T+
Sbjct: 225 ADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTL 284

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG-KG 342
           V  F  +G IK+A  V + M   G  P + TYN +   LC+   V+ A  + +EM     
Sbjct: 285 VSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLST 344

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
            +P+  TYN ++           AL  +  M+D   +P + T+NI+++  C  G++E  L
Sbjct: 345 ALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEAL 404

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
              EK+      P++ TYN LI +     K+ ++  A  L+ EMV +G     FT N VL
Sbjct: 405 GKLEKIAEEGLAPDVITYNTLIDAYC---KAGNVAKAFTLMDEMVGKGLKMDTFTLNTVL 461

Query: 463 NGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
             L  +     A+E+L    + G +P +
Sbjct: 462 YNLCKMKRYEDAEELLHSPPQRGFVPDE 489



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 160/336 (47%), Gaps = 5/336 (1%)

Query: 132 LSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEK 191
           L L P   TF ++   + S G    A+    +M   G      ++NT+L+  C++  + +
Sbjct: 202 LRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGE 261

Query: 192 AYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250
           A  L  ++ R        +YN + + +  +    +A +V++ M   G  P+L TYN++  
Sbjct: 262 ARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAV 321

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEI-DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
           G  +AG+++EA+R   EM++    + DVVTY T+V           A  + + M + GV 
Sbjct: 322 GLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVK 381

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           P++ T+N +++ LCK+  +E A+   E++  +G  P+  TYN +I   C  G + +A   
Sbjct: 382 PTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTL 441

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
           +  M     + +  T N ++   C     E   EL         +P+  +Y  ++++ F 
Sbjct: 442 MDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFK 501

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
               +  L   +L  +M++R  +P   T+N ++ GL
Sbjct: 502 EYNPEPAL---RLWDQMIERKLIPSISTYNTLIKGL 534



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 130/311 (41%), Gaps = 18/311 (5%)

Query: 91  NILSYHPTYAHSPSSFDHAIDLAARLRDY--RTVWTLVHRMKSLSLGPTQKTFAIIAERY 148
            +L   P     P    +   +AA  ++Y       L  +M    L P+  T+  + +  
Sbjct: 475 ELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGL 534

Query: 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADV 207
               +   A+     + E G      ++N I+   CKE  +E A+    K+    FK DV
Sbjct: 535 CRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDV 594

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           ++ N + NG CL  + +KAL++ +  V++G   ++ TYN +++   + G ++ A  FF +
Sbjct: 595 VTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDD 654

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M+ +  + D  TY  ++      G  + A N+   + + G L       +    L K  S
Sbjct: 655 MEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGKL-----SQSFACPLLKPSS 709

Query: 328 VENAILVFEEMVGKGYMPNST--------TYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
            + A +  +E  GK    +S         TY   + GLC  G+++ A   +  M      
Sbjct: 710 ADEADV--KEHEGKPEAESSEKAQDNALETYMERLNGLCTGGQLKEAKAVLDEMMQKGMP 767

Query: 380 PNVQTYNILIR 390
            +  TY  L+ 
Sbjct: 768 VDSSTYITLME 778



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 112/262 (42%), Gaps = 39/262 (14%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           S S+++  I    R+   +     ++ +    L P + T+ II   Y   G  + A +  
Sbjct: 523 SISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFH 582

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCL 219
             M E+  +  + + NT+++ LC   K++KA  LF+  V +GK K DVI+YN +    C 
Sbjct: 583 NKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGK-KVDVITYNTLIQSMCK 641

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF-------------- 265
           V   + AL    +M  +GL P+  TYN+VL     AG+ EEA                  
Sbjct: 642 VGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGKLSQSFA 701

Query: 266 ----------------------LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
                                  E  ++  +  + TY   ++G    G++K A+ V D M
Sbjct: 702 CPLLKPSSADEADVKEHEGKPEAESSEKAQDNALETYMERLNGLCTGGQLKEAKAVLDEM 761

Query: 304 VNGGVLPSVATYNAMIQVLCKK 325
           +  G+    +TY  +++ L K+
Sbjct: 762 MQKGMPVDSSTYITLMEGLIKR 783


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 119/450 (26%), Positives = 200/450 (44%), Gaps = 73/450 (16%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAAR----LRDYRTVWTLVHR------------- 128
           A+ FF+       Y H   S++H +D+  +     R  +    L+H              
Sbjct: 10  AIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILI 69

Query: 129 ---------MKSL---------SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCR 170
                    M++L         S+ P    F ++       G  D+AVK+F +M     +
Sbjct: 70  RGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVK 129

Query: 171 QSLNSFNTILDLLCKEKKVEKAYNLFKVF---RGKFKADVISYNVIANGWCLVKRTNKAL 227
             + ++NT++  LCK   +EKA  L +      GK   D+++YN + N +    R  +A 
Sbjct: 130 PEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREAC 189

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH-- 285
              ++M   G+NP++ T NI++ G  + G +EEA      MK      DV+TY +I+H  
Sbjct: 190 AFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHAL 249

Query: 286 ------------------------------GFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
                                         GF   G + RA  V + M    +LP V TY
Sbjct: 250 CVAGKVVEAAEILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITY 309

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
             ++  LC+   V+ A  + EE+V +GY+P+   Y  ++ GLC +GE+E A + V  M  
Sbjct: 310 TILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSV 369

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
             C   V  Y+ L+  +C AG + +  E+  +M S   +P L TYNI++  +    K   
Sbjct: 370 RGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLI---KDGS 426

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           +  A  L+ ++V RG++P   T+N +++GL
Sbjct: 427 ISKAVSLISDLVARGYVPDVVTYNTLIDGL 456



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 165/346 (47%), Gaps = 7/346 (2%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177
           D      ++  MK     P   T+  I      AGK   A +I  +M    C   L +FN
Sbjct: 219 DVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTM---SCSPDLVTFN 275

Query: 178 TILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
           T+LD  CK   + +A  + + + R     DVI+Y ++ NG C V +   A  +L+E+V +
Sbjct: 276 TLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQ 335

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           G  P++  Y  ++ G  ++G+IEEA +   EM  R C   VV Y+++V G+   G + +A
Sbjct: 336 GYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKA 395

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
           R +   MV+  ++P + TYN ++  L K  S+  A+ +  ++V +GY+P+  TYN +I G
Sbjct: 396 REILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDG 455

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
           LC    +  A +    M    C PN  T   ++   C  G ++    L  +M      PN
Sbjct: 456 LCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPN 515

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           +  Y  LI  +    + DD   A  +L  M  +G     F + +++
Sbjct: 516 VVVYTSLIDGLCKSDRMDD---ACMVLDAMRGQGVALDDFAYRKLI 558



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/293 (32%), Positives = 144/293 (49%), Gaps = 18/293 (6%)

Query: 203 FKADVISYNVIANGWCLVK-----RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
           +K DV SYN + +   LVK     RT K   V K+++  G +PNL T+ I+++G  +AGQ
Sbjct: 23  YKHDVHSYNHLLD--ILVKSGHHFRTGK---VYKDLLHSGCSPNLVTFKILIRGNCKAGQ 77

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
              A  F   + +     DV  +  ++HG    G   +A  +F+ M +  V P + TYN 
Sbjct: 78  AMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNT 137

Query: 318 MIQVLCKKDSVENAILVFEEMVGKG--YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           +I  LCK  ++E A  + EEM+ KG    P+  TYN +I        +  A  F  +MK 
Sbjct: 138 VISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKA 197

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
               P+V T NIL+   C  G++E  LE+ + M     +P++ TYN +I ++ V  K   
Sbjct: 198 AGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGK--- 254

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           ++ A ++L  M      P   TFN +L+G    G    A E+L    R   LP
Sbjct: 255 VVEAAEILKTM---SCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILP 304



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 137/290 (47%), Gaps = 3/290 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+ I+       G+   A  +   +   G    + ++ +++D LCK  ++E+A+ L
Sbjct: 304 PDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKL 363

Query: 196 FK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
            K    RG  +  V+ Y+ + +G+C     +KA E+L EMV   + P L TYNIVL G  
Sbjct: 364 VKEMSVRG-CRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLI 422

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
           + G I +A     ++  R    DVVTY T++ G      ++ A ++ D M + G  P+  
Sbjct: 423 KDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDV 482

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           T  +++  LC+   V++A  +  EM  K + PN   Y  +I GLC +  M+ A   +  M
Sbjct: 483 TLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLDAM 542

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           +      +   Y  LI      G +   + ++++M +   LP+  T   L
Sbjct: 543 RGQGVALDDFAYRKLIVSMSHGGRVAEAMAMYDEMVARGFLPDGSTSKTL 592



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 117/248 (47%), Gaps = 5/248 (2%)

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           G   ++ +YN +L    ++G      + + ++    C  ++VT+  ++ G    G+  RA
Sbjct: 22  GYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRA 81

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
                 +    V P V  +N +I  L K  + + A+ +FE M      P   TYN VI G
Sbjct: 82  LEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISG 141

Query: 357 LCHTGEMERALEFVGRM--KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
           LC +G +E+A E +  M  K  +  P++ TYN LI  F  A  I       EKM +    
Sbjct: 142 LCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKAAGIN 201

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           P++ T NIL+S +    K  D+  A ++L  M   G +P   T+N +++ L + G    A
Sbjct: 202 PDVLTCNILVSGIC---KDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEA 258

Query: 475 KEILRLQS 482
            EIL+  S
Sbjct: 259 AEILKTMS 266



 Score = 41.6 bits (96), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 1/147 (0%)

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           Y     +++  ID   +    R    L   M S    P   T   +       G+ D A 
Sbjct: 442 YVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAW 501

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGW 217
            + + M       ++  + +++D LCK  +++ A  +    RG+  A D  +Y  +    
Sbjct: 502 SLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSM 561

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTT 244
               R  +A+ +  EMV RG  P+ +T
Sbjct: 562 SHGGRVAEAMAMYDEMVARGFLPDGST 588


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 129/480 (26%), Positives = 213/480 (44%), Gaps = 77/480 (16%)

Query: 79  LWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLA-ARLRDYRTVWTLVHRMKSLSLG-- 135
           L+   L A    + L+  P    +PSS  + +  A A +R + T   L  RMKSLSL   
Sbjct: 23  LFKSVLSADKALSPLAVLPHLDGAPSSLPNLLLTASAAVRPHATSLRLYSRMKSLSLPIS 82

Query: 136 -----------PTQKTFAIIAERY------------------VSAGKADRAVKIFLSMHE 166
                      P+   FA+ A+ +                   SAGK  RA+++   M  
Sbjct: 83  TASLHPLLSALPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMP- 141

Query: 167 HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR--GKFKADVISYNVIANGWCLVKRTN 224
              R +  ++NT++   C   +V+ A ++ +  R  G    +  +Y  + +GWC V R +
Sbjct: 142 ---RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVD 198

Query: 225 KALEVLKEM------------------------------------VDRGLNPNLTTYNIV 248
           +A++V  EM                                    V+RG+   + TYN++
Sbjct: 199 EAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLL 258

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           +   F  G+  EA+    EM  +    DV TY  +++G    G +K+A  +F+ M   GV
Sbjct: 259 VHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGV 318

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
             +V TY A+I  L KK  V+    +F+E V +G  P+   YN +I     +G ++RA E
Sbjct: 319 RATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFE 378

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
            +G M+     P+  TYN L+R  C  G ++   +L ++M      P+L TYN LIS   
Sbjct: 379 IMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYS 438

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           ++    D L   ++  EM+++GF P   T+N ++ GL   G    A+ +++     G  P
Sbjct: 439 MKGDVKDAL---RIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITP 495



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 138/248 (55%), Gaps = 3/248 (1%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
            + LV  M    L P   T+ I+   +   G   +A++IF +M   G R ++ ++  ++ 
Sbjct: 271 AYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIY 330

Query: 182 LLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
            L K+ +V++   LF +  R   + D++ YN + N        ++A E++ EM  + + P
Sbjct: 331 ALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAP 390

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           +  TYN +++G    G+++EA +   EM +R  + D+VTY T++ G+ + G++K A  + 
Sbjct: 391 DDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIR 450

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           + M+N G  P++ TYNA+IQ LCK    ++A  + +EMV  G  P+ +TY  +I GL  T
Sbjct: 451 NEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL--T 508

Query: 361 GEMERALE 368
            E ERA++
Sbjct: 509 TEDERAID 516



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 138/297 (46%), Gaps = 4/297 (1%)

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKAD 206
           Y   GK D A+     M E G   ++ ++N ++  L  + +  +AY L +   GK    D
Sbjct: 227 YCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPD 286

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           V +YN++ NG C      KALE+ + M  RG+   + TY  ++    + GQ++E  + F 
Sbjct: 287 VFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFD 346

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           E  +R    D+V Y  +++     G I RA  +   M    + P   TYN +++ LC   
Sbjct: 347 EAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLG 406

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            V+ A  + +EM  +G  P+  TYN +I G    G+++ AL     M +    P + TYN
Sbjct: 407 RVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYN 466

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV---RKKSDDLLVAG 440
            LI+  C  G+ +    + ++M      P+  TY  LI  +     R   D+ L A 
Sbjct: 467 ALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTEDERAIDDERLAAA 523



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 9/180 (5%)

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           T+N M++ LC       A+ +  +M      PN+ TYN VI G C  G ++ AL+ +  M
Sbjct: 116 TFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMREM 171

Query: 374 KD-DECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISSMFVRK 431
           ++     PN  TY  +I  +C  G ++  +++F++M   G   P    YN LI     + 
Sbjct: 172 RERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQG 231

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           K D  L+       MV+RG      T+N +++ L + G    A E++      G  P  F
Sbjct: 232 KLDTALLYRD---RMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVF 288


>gi|15234349|ref|NP_194530.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208278|sp|Q9SUD8.1|PP340_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g28010
 gi|4455360|emb|CAB36770.1| putative protein [Arabidopsis thaliana]
 gi|7269655|emb|CAB79603.1| putative protein [Arabidopsis thaliana]
 gi|332660020|gb|AEE85420.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 117/387 (30%), Positives = 191/387 (49%), Gaps = 20/387 (5%)

Query: 96  HPTYAHSPSSFDHAIDLAARL--------------RDYRTVWTLVHRMKSLSLGPTQKTF 141
           +P   ++ S F  A+D  + L              R++   ++   +M          + 
Sbjct: 51  NPQLKNAVSVFQQAVDSGSSLAFAGNNLMAKLVRSRNHELAFSFYRKMLETDTFINFVSL 110

Query: 142 AIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR- 200
           + + E YV   K   A  +   M + G   ++ + N +L  LC+  +  KA +L +  R 
Sbjct: 111 SGLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRR 170

Query: 201 GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
                DV SYN +  G+C  K   KALE+  EM   G + +L T+ I++  + +AG+++E
Sbjct: 171 NSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDE 230

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
           A  F  EMK    E D+V YT+++ GF   GE+ R + +FD ++  G  P   TYN +I+
Sbjct: 231 AMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIR 290

Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
             CK   ++ A  +FE M+ +G  PN  TY  +I GLC  G+ + AL+ +  M + + EP
Sbjct: 291 GFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEP 350

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAG 440
           N  TYNI+I   C  G +   +E+ E M      P+  TYNIL+  +  +    DL  A 
Sbjct: 351 NAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKG---DLDEAS 407

Query: 441 KLLIEMV-DRGFM-PRKFTFNRVLNGL 465
           KLL  M+ D  +  P   ++N +++GL
Sbjct: 408 KLLYLMLKDSSYTDPDVISYNALIHGL 434



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 116/478 (24%), Positives = 208/478 (43%), Gaps = 80/478 (16%)

Query: 90  FNILSYHPTYAHSPSSFDHAIDLAARLRDYRT--VWTLVHRMKSLSLGPTQKTFAIIAER 147
           F +L+       + + ++H I L    R+       +L+  M+  SL P   ++  +   
Sbjct: 127 FGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRG 186

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV--FRGKFKA 205
           +    + ++A+++   M   GC  SL ++  ++D  CK  K+++A    K   F G  +A
Sbjct: 187 FCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMG-LEA 245

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           D++ Y  +  G+C     ++   +  E+++RG +P   TYN +++G+ + GQ++EA   F
Sbjct: 246 DLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIF 305

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
             M +R    +V TYT ++ G   VG+ K A  + + M+     P+  TYN +I  LCK 
Sbjct: 306 EFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKD 365

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC--EPNVQ 383
             V +A+ + E M  +   P++ TYN+++ GLC  G+++ A + +  M  D    +P+V 
Sbjct: 366 GLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVI 425

Query: 384 TYNILIRYFCD-----------------------------------AGEIERGLELFEKM 408
           +YN LI   C                                    AG++ + +EL++++
Sbjct: 426 SYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQI 485

Query: 409 GSGVCLPNLDTY-----------------------------------NILISSMFVRKKS 433
                + N DTY                                   N L+SS+    K 
Sbjct: 486 SDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLC---KE 542

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
             L  A +L  EM      P   +FN +++G L  G+   A+ +L   SR G  P  F
Sbjct: 543 GSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLF 600



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 165/349 (47%), Gaps = 7/349 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+ II  +    G    AV+I   M +   R    ++N +L  LC +  +++A  L
Sbjct: 350 PNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKL 409

Query: 196 FKVF---RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
             +          DVISYN + +G C   R ++AL++   +V++    +  T NI+L   
Sbjct: 410 LYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNST 469

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
            +AG + +A   + ++   K   +  TYT ++ GF   G +  A+ +   M    + PSV
Sbjct: 470 LKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSV 529

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
             YN ++  LCK+ S++ A  +FEEM      P+  ++N++I G    G+++ A   +  
Sbjct: 530 FDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVG 589

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           M      P++ TY+ LI  F   G ++  +  F+KM      P+    + ++     + +
Sbjct: 590 MSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGE 649

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL-LIGNQGLAKEILRL 480
           +D L    +L+ ++VD+  +  K     V++ +     N  LAK +LR+
Sbjct: 650 TDKLT---ELVKKLVDKDIVLDKELTCTVMDYMCNSSANMDLAKRLLRV 695



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 146/325 (44%), Gaps = 40/325 (12%)

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIAN 215
           AV +F    + G   +  + N ++  L + +  E A++ + K+       + +S + +  
Sbjct: 57  AVSVFQQAVDSGSSLAF-AGNNLMAKLVRSRNHELAFSFYRKMLETDTFINFVSLSGLLE 115

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
            +  +++T  A  VL  M+ RG   N+  +NI+LKG  R  +  +A     EM++     
Sbjct: 116 CYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRR----- 170

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
                                           ++P V +YN +I+  C+   +E A+ + 
Sbjct: 171 ------------------------------NSLMPDVFSYNTVIRGFCEGKELEKALELA 200

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
            EM G G   +  T+ ++I   C  G+M+ A+ F+  MK    E ++  Y  LIR FCD 
Sbjct: 201 NEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDC 260

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
           GE++RG  LF+++      P   TYN LI       K   L  A ++   M++RG  P  
Sbjct: 261 GELDRGKALFDEVLERGDSPCAITYNTLIRGFC---KLGQLKEASEIFEFMIERGVRPNV 317

Query: 456 FTFNRVLNGLLLIGNQGLAKEILRL 480
           +T+  +++GL  +G    A ++L L
Sbjct: 318 YTYTGLIDGLCGVGKTKEALQLLNL 342



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/289 (19%), Positives = 132/289 (45%), Gaps = 4/289 (1%)

Query: 94  SYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGK 153
           SY      S ++  H +    RL     ++ L+  ++ L  G  + T  I+    + AG 
Sbjct: 418 SYTDPDVISYNALIHGLCKENRLHQALDIYDLL--VEKLGAGD-RVTTNILLNSTLKAGD 474

Query: 154 ADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNV 212
            ++A++++  + +    ++ +++  ++D  CK   +  A  L    R  + +  V  YN 
Sbjct: 475 VNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNC 534

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           + +  C     ++A  + +EM      P++ ++NI++ G  +AG I+ A    + M +  
Sbjct: 535 LLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAG 594

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
              D+ TY+ +++ F  +G +  A + FD MV+ G  P     +++++    +   +   
Sbjct: 595 LSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLT 654

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
            + +++V K  + +      V+  +C++       + + R+ DD+ E +
Sbjct: 655 ELVKKLVDKDIVLDKELTCTVMDYMCNSSANMDLAKRLLRVTDDKEERD 703


>gi|224118166|ref|XP_002317747.1| predicted protein [Populus trichocarpa]
 gi|222858420|gb|EEE95967.1| predicted protein [Populus trichocarpa]
          Length = 498

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 114/391 (29%), Positives = 192/391 (49%), Gaps = 12/391 (3%)

Query: 95  YHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMK--SLSLGPTQKTFAIIAERYVSAG 152
           YHP ++H+  ++   ID  +R R +  V +L+ ++   S  +      F  +   Y  AG
Sbjct: 41  YHPGFSHTYDTYHSIIDKLSRARAFDGVESLLSQLSRNSSHIKCGDDVFISVIRNYGLAG 100

Query: 153 KADRAVKIFLSMHEHGCRQ-SLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA--DVIS 209
           +   A+K F  + E    Q S+   NT+L++  + K+     +  K  + K+    +V S
Sbjct: 101 RPRLALKTFTRIKEEFSMQPSVKLLNTLLNVFVQNKRYHLVGSTLKNCKDKYGVLPNVFS 160

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           +N++    C       AL+V  EM   G+ PNL TY  +L G+   G +  A + F E+ 
Sbjct: 161 FNILIKALCKKNDVENALKVFDEMPTMGMIPNLVTYTTILGGFVSRGDLVNAEKVFSEIS 220

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
            +    D  TYT ++ G+   G +  A  V D M   GV P+  TY  MI   CK+    
Sbjct: 221 DKGWLPDATTYTVLMVGYCKQGRLSDAIKVMDNMEYNGVEPNEVTYGVMIDAYCKEKKSG 280

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
            A  + ++M+ K ++P+ST    VI  LC  G++E A     RM +  C P+    + LI
Sbjct: 281 EARNLIDDMLDKKFLPSSTLCCKVIDVLCEDGKVENACHLWKRMLEKNCLPDNAIMSTLI 340

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
            + C  G++    +LF++   G  +P+L TYN LI+ M  R + ++   AG+L  +MV++
Sbjct: 341 HWLCKEGKVWEARKLFDEFEQGT-IPSLMTYNTLIAGMCERGELNE---AGRLWDDMVEK 396

Query: 450 GFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
              P  FT+N ++ G +     G+ KE +R+
Sbjct: 397 RCRPNAFTYNMLIKGFM---KAGVVKEGVRI 424



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 141/293 (48%), Gaps = 2/293 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           SF+  I    +  D      +   M ++ + P   T+  I   +VS G    A K+F  +
Sbjct: 160 SFNILIKALCKKNDVENALKVFDEMPTMGMIPNLVTYTTILGGFVSRGDLVNAEKVFSEI 219

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRT 223
            + G      ++  ++   CK+ ++  A  +         + + ++Y V+ + +C  K++
Sbjct: 220 SDKGWLPDATTYTVLMVGYCKQGRLSDAIKVMDNMEYNGVEPNEVTYGVMIDAYCKEKKS 279

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A  ++ +M+D+   P+ T    V+      G++E A   +  M ++ C  D    +T+
Sbjct: 280 GEARNLIDDMLDKKFLPSSTLCCKVIDVLCEDGKVENACHLWKRMLEKNCLPDNAIMSTL 339

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +H     G++  AR +FD     G +PS+ TYN +I  +C++  +  A  ++++MV K  
Sbjct: 340 IHWLCKEGKVWEARKLFDEF-EQGTIPSLMTYNTLIAGMCERGELNEAGRLWDDMVEKRC 398

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
            PN+ TYN++I+G    G ++  +  +  M D+ C PN  TY +LI    ++G
Sbjct: 399 RPNAFTYNMLIKGFMKAGVVKEGVRILEEMLDNGCLPNKSTYTLLIEGLQESG 451



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 3/189 (1%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID   + +       L+  M      P+      + +     GK + A  ++  M E  C
Sbjct: 270 IDAYCKEKKSGEARNLIDDMLDKKFLPSSTLCCKVIDVLCEDGKVENACHLWKRMLEKNC 329

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEV 229
                  +T++  LCKE KV +A  LF  F       +++YN +  G C     N+A  +
Sbjct: 330 LPDNAIMSTLIHWLCKEGKVWEARKLFDEFEQGTIPSLMTYNTLIAGMCERGELNEAGRL 389

Query: 230 LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF-- 287
             +MV++   PN  TYN+++KG+ +AG ++E  R   EM    C  +  TYT ++ G   
Sbjct: 390 WDDMVEKRCRPNAFTYNMLIKGFMKAGVVKEGVRILEEMLDNGCLPNKSTYTLLIEGLQE 449

Query: 288 -GVVGEIKR 295
            G+ G++ +
Sbjct: 450 SGMEGDVDK 458


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 114/410 (27%), Positives = 188/410 (45%), Gaps = 14/410 (3%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAA--RLRDYRTVWTLVHRMKSLSLGPTQKTFAI 143
           A  F N LS   +Y   P +  +   L      + +  V  L   M   +  P + TF +
Sbjct: 234 AREFLNRLS---SYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDM 290

Query: 144 IAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF 203
           +   +   G  +RA+++   M  HGC  +    N +++ +CK+ +V+ A+       G +
Sbjct: 291 LVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNM-GSY 349

Query: 204 --KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
               D ISY  +  G C  +R   A E+LKEMV +   PN  T+N  +    + G IE+A
Sbjct: 350 GCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQA 409

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
                +M +  CE+++VTY  +V+GF V G +  A  +F  M      P+  TY  ++  
Sbjct: 410 TMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSM---PCKPNTITYTTLLTG 466

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           LC  + ++ A  +  EM+ K   PN  T+NV++   C  G M+ A+E V +M +  C PN
Sbjct: 467 LCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPN 526

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
           + TYN L+         E  LEL   + S    P++ TY+ +I    V  + D +  A K
Sbjct: 527 LITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIG---VLSREDRVEEAIK 583

Query: 442 LLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           +   + D G  P+   +N++L  L    N   A +        G +P + 
Sbjct: 584 MFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNEL 633



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 175/358 (48%), Gaps = 10/358 (2%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           +L+  M      P+  T+ ++ E    +    +A+++   M   GC  ++ ++N I++ +
Sbjct: 166 SLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGM 225

Query: 184 CKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           C+E +V+ A   L ++    F+ D +SY  +  G C  KR     E+  EM+++   PN 
Sbjct: 226 CREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNE 285

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            T++++++ + R G +E A +   +M    C  +      +++     G +  A    + 
Sbjct: 286 VTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNN 345

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M + G  P   +Y  +++ LC+ +  E+A  + +EMV K   PN  T+N  I  LC  G 
Sbjct: 346 MGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGL 405

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           +E+A   + +M +  CE N+ TYN L+  FC  G ++  LELF  M    C PN  TY  
Sbjct: 406 IEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP---CKPNTITYTT 462

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           L++ +   ++ D    A +LL EM+ +   P   TFN +++       +GL  E + L
Sbjct: 463 LLTGLCNAERLD---AAAELLAEMLQKDCAPNVVTFNVLVS---FFCQKGLMDEAIEL 514



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 183/379 (48%), Gaps = 9/379 (2%)

Query: 103 PSSFDHAIDLAARLRD--YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           PS   + + L A  +   +     ++  M++    P   T+ +I       G+ D A + 
Sbjct: 178 PSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREF 237

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCL 219
              +  +G +    S+ T+L  LC  K+ E    LF ++       + ++++++   +C 
Sbjct: 238 LNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCR 297

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
                +A++VL++M   G   N T  NIV+    + G++++A++F   M    C  D ++
Sbjct: 298 GGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTIS 357

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           YTT++ G       + A+ +   MV     P+  T+N  I +LC+K  +E A ++ E+M 
Sbjct: 358 YTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMS 417

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             G   N  TYN ++ G C  G ++ ALE    M    C+PN  TY  L+   C+A  ++
Sbjct: 418 EHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP---CKPNTITYTTLLTGLCNAERLD 474

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
              EL  +M    C PN+ T+N+L+ S F +K   D  +  +L+ +M++ G  P   T+N
Sbjct: 475 AAAELLAEMLQKDCAPNVVTFNVLV-SFFCQKGLMDEAI--ELVEQMMEHGCTPNLITYN 531

Query: 460 RVLNGLLLIGNQGLAKEIL 478
            +L+G+    N   A E+L
Sbjct: 532 TLLDGITKDCNSEEALELL 550



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 103/360 (28%), Positives = 162/360 (45%), Gaps = 9/360 (2%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           + S+ + P   T+  I       G+   A+ +   M   GC+ S+ ++  +L+ +CK   
Sbjct: 136 IASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTG 195

Query: 189 VEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
             +A  +    R K    ++++YNVI NG C   R + A E L  +   G  P+  +Y  
Sbjct: 196 FGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTT 255

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           VLKG   A + E+    F EM ++ C  + VT+  +V  F   G ++RA  V + M   G
Sbjct: 256 VLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHG 315

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
              +    N +I  +CK+  V++A      M   G  P++ +Y  V++GLC     E A 
Sbjct: 316 CAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAK 375

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           E +  M    C PN  T+N  I   C  G IE+   L E+M    C  N+ TYN L++  
Sbjct: 376 ELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGF 435

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR--LQSRCG 485
            V+ + D  L   +L   M  +   P   T+  +L GL        A E+L   LQ  C 
Sbjct: 436 CVQGRVDSAL---ELFYSMPCK---PNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCA 489



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 160/333 (48%), Gaps = 9/333 (2%)

Query: 90  FNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWT----LVHRMKSLSLGPTQKTFAIIA 145
           F  L+   +Y  SP +  +   L    R  R  W     L+  M   +  P + TF    
Sbjct: 340 FQFLNNMGSYGCSPDTISYTTVLKGLCRAER--WEDAKELLKEMVRKNCPPNEVTFNTFI 397

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA 205
                 G  ++A  +   M EHGC  ++ ++N +++  C + +V+ A  LF  +    K 
Sbjct: 398 CILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELF--YSMPCKP 455

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           + I+Y  +  G C  +R + A E+L EM+ +   PN+ T+N+++  + + G ++EA    
Sbjct: 456 NTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELV 515

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
            +M +  C  +++TY T++ G       + A  +  G+V+ GV P + TY+++I VL ++
Sbjct: 516 EQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSRE 575

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
           D VE AI +F  +   G  P +  YN ++  LC     + A++F   M  + C PN  TY
Sbjct: 576 DRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTY 635

Query: 386 NILIRYFCDAGEIERGLELFEKMGS-GVCLPNL 417
             LI    +   ++   +L  ++ S GV   NL
Sbjct: 636 ITLIEGLANEDFLKETRDLLRELCSRGVLNKNL 668



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 137/301 (45%), Gaps = 41/301 (13%)

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           C   RT+ A  VL+     G   ++  YN ++ GY R GQ++ A R    M       D 
Sbjct: 89  CRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMPVAP---DA 145

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
            TYT I+ G    G +  A ++ D M++ G  PSV TY  +++ +CK      A+ V +E
Sbjct: 146 YTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDE 205

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR------------------------- 372
           M  KG  PN  TYNV+I G+C  G ++ A EF+ R                         
Sbjct: 206 MRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKR 265

Query: 373 ----------MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
                     M +  C PN  T+++L+R+FC  G +ER +++ E+M    C  N    NI
Sbjct: 266 WEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNI 325

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           +I+++  + + DD   A + L  M   G  P   ++  VL GL        AKE+L+   
Sbjct: 326 VINTICKQGRVDD---AFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMV 382

Query: 483 R 483
           R
Sbjct: 383 R 383



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 168/373 (45%), Gaps = 8/373 (2%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII 144
           +A+     +S H   A++ +  +  I+   +       +  ++ M S    P   ++  +
Sbjct: 303 RAIQVLEQMSGHGCAANT-TLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTV 361

Query: 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKF 203
            +    A + + A ++   M    C  +  +FNT + +LC++  +E+A  L  ++     
Sbjct: 362 LKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGC 421

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
           + ++++YN + NG+C+  R + ALE+   M      PN  TY  +L G   A +++ A  
Sbjct: 422 EVNIVTYNALVNGFCVQGRVDSALELFYSM---PCKPNTITYTTLLTGLCNAERLDAAAE 478

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
              EM ++ C  +VVT+  +V  F   G +  A  + + M+  G  P++ TYN ++  + 
Sbjct: 479 LLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGIT 538

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
           K  + E A+ +   +V  G  P+  TY+ +I  L     +E A++    ++D    P   
Sbjct: 539 KDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAV 598

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
            YN ++   C     +  ++ F  M S  C+PN  TY  LI  +      D L     LL
Sbjct: 599 IYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGL---ANEDFLKETRDLL 655

Query: 444 IEMVDRGFMPRKF 456
            E+  RG + +  
Sbjct: 656 RELCSRGVLNKNL 668



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 87/197 (44%), Gaps = 6/197 (3%)

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
           ++  A  + D   + G  P V     +I+ LC++    +A  V       G   +   YN
Sbjct: 58  DLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYN 117

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
            ++ G C  G+++ A   +  M      P+  TY  +IR  CD G +   L L + M   
Sbjct: 118 TLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHR 174

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
            C P++ TY +L+ ++    KS     A ++L EM  +G  P   T+N ++NG+   G  
Sbjct: 175 GCQPSVVTYTVLLEAVC---KSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRV 231

Query: 472 GLAKEILRLQSRCGRLP 488
             A+E L   S  G  P
Sbjct: 232 DDAREFLNRLSSYGFQP 248


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 107/360 (29%), Positives = 183/360 (50%), Gaps = 8/360 (2%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            RL + + V  +   M S+  GP   T+  +       G    A ++   M   GC  ++
Sbjct: 367 GRLDEAKAV--MHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNV 424

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKE 232
            ++  ++D  CKE ++E+A N+     GK  A + + YN + +  C  ++   AL +  +
Sbjct: 425 ITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGD 484

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M  +G  P++ T+N ++ G  +  + EEA   + +M       + +TY T++H F   G 
Sbjct: 485 MSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGA 544

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           ++ A  + + M+  G      TYN +I+ LC+  ++E  + +FE+M+ KG  PN+ + N+
Sbjct: 545 MQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNI 604

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG-SG 411
           +I GLC TG ++ ALEF+  M      P++ TYN LI   C  G  +  L LF+K+   G
Sbjct: 605 LINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEG 664

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
           +C P+  TYN LIS        DD   A  LL   VD GF+P + T+  +++  +  G+Q
Sbjct: 665 IC-PDAITYNTLISWHCKEGMFDD---AHLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQ 720



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 128/495 (25%), Positives = 207/495 (41%), Gaps = 113/495 (22%)

Query: 92  ILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149
           +L     Y+  P+  S++  +D+       + V  + + M S  + PT  TF ++ +   
Sbjct: 169 LLDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALC 228

Query: 150 SAGKADRAVKIFLSMHEHGC------RQSL-----------------------------N 174
              + D A  +   M  HGC       Q+L                             N
Sbjct: 229 LVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVN 288

Query: 175 SFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVL-- 230
           +FN  +  LCK  ++ +A  L    + RG F  +  +Y V+ +G C + + ++A  +L  
Sbjct: 289 TFNDAIHGLCKMLRIHEAAKLVDRMLLRG-FTPNSFTYGVLMHGLCRMGKVDEARMLLNK 347

Query: 231 ------------------------------KEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
                                         + M+  G  P++ TYN ++ G  + G +  
Sbjct: 348 VPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVS 407

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
           A     EM+ + CE +V+TYT ++  F   G ++ ARNV D M   G+  +   YN +I 
Sbjct: 408 ARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLIS 467

Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT-------------------- 360
            LCK + V++A+ +F +M  KG  P+  T+N +I GLC                      
Sbjct: 468 ALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIA 527

Query: 361 ---------------GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
                          G M+ AL+ V  M    C  +  TYN LI+  C AG IE+GL LF
Sbjct: 528 NTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALF 587

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           E M S    PN  + NILI+ +    ++ ++  A + L +M+ RG  P   T+N ++NGL
Sbjct: 588 EDMMSKGLNPNNISCNILINGLC---RTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGL 644

Query: 466 LLIGNQGLAKEILRL 480
                 G A+E L L
Sbjct: 645 C---KTGRAQEALNL 656



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 112/415 (26%), Positives = 181/415 (43%), Gaps = 39/415 (9%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           ++  F        Y H    +   ID      +++T+  L+ +MK   +   +  F +I 
Sbjct: 94  SMELFQWAGTQKGYCHMFDVYYMLIDKLGAAGEFKTIDALLMQMKQEGIVFRESLFILIM 153

Query: 146 ERYVSAGKADRAVKIFLSMHE-HGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKF 203
           + Y  AG   +A ++ L M   + C  +  S+N +LD+L      +   N+F ++     
Sbjct: 154 KHYGRAGLPGQATRLLLDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGI 213

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
              V ++ V+    CLV   + A  +LK+M   G  PN   Y  ++    + G++ E  +
Sbjct: 214 SPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLK 273

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
              EM    C  DV T+   +HG   +  I  A  + D M+  G  P+  TY  ++  LC
Sbjct: 274 LLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLC 333

Query: 324 KKDSVENA-----------ILVF---------------------EEMVGKGYMPNSTTYN 351
           +   V+ A           +++F                     E M+  G  P+  TYN
Sbjct: 334 RMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYN 393

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GS 410
            +I GLC  G +  A E +  M+   CEPNV TY ILI  FC  G +E    + ++M G 
Sbjct: 394 TLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGK 453

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           G+ L N   YN LIS++   +K  D L    +  +M  +G  P  FTFN ++ GL
Sbjct: 454 GLAL-NAVGYNCLISALCKDEKVQDAL---NMFGDMSSKGCKPDIFTFNSLIFGL 504



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 144/311 (46%), Gaps = 36/311 (11%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L++ M+     P   T+ I+ +R+   G+ + A  +   M   G   +   +N ++  LC
Sbjct: 411 LMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALC 470

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K++KV+ A N+F     K  K D+ ++N +  G C V +  +AL + ++M+  G+  N  
Sbjct: 471 KDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTI 530

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN ++  + R G ++EA +   +M  R C +D +TY  ++      G I++   +F+ M
Sbjct: 531 TYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDM 590

Query: 304 ---------------VNG--------------------GVLPSVATYNAMIQVLCKKDSV 328
                          +NG                    G+ P + TYN++I  LCK    
Sbjct: 591 MSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRA 650

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           + A+ +F+++  +G  P++ TYN +I   C  G  + A   + R  D    PN  T+ IL
Sbjct: 651 QEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYIL 710

Query: 389 IRYFCDAGEIE 399
           +  F   G+ E
Sbjct: 711 VSNFIKEGDQE 721



 Score = 40.0 bits (92), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 18/156 (11%)

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           KGY      Y ++I  L   GE +     + +MK +        + ++++++  AG   +
Sbjct: 105 KGYCHMFDVYYMLIDKLGAAGEFKTIDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQ 164

Query: 401 GLELFEKM-GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK-------LLIEMVDRGFM 452
              L   M G   C P   +YN+++          D+L+AG        +  EM+ +G  
Sbjct: 165 ATRLLLDMRGVYSCEPTFRSYNVVL----------DVLLAGNCPKVVPNVFYEMLSKGIS 214

Query: 453 PRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           P  +TF  V+  L L+     A  +L+  +R G +P
Sbjct: 215 PTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVP 250


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 110/424 (25%), Positives = 195/424 (45%), Gaps = 25/424 (5%)

Query: 87  LHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAE 146
           +  F+ L     Y HS  +++  +D  A+    +  +    +M+     P   T++I+  
Sbjct: 22  VRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLR 81

Query: 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR--GKFK 204
               AG+ D+A ++   + E G + ++ +++ ++D  CK  +V+ A  +FK     G   
Sbjct: 82  GLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCV 141

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
            DV+++N +  G C  +R ++A  + + M   G  PN+ +Y+ +L G  +AG+++EA R 
Sbjct: 142 PDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRL 201

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
           + EM ++ C  D+V YT+ V G      +  A +    MV  G       ++ +I +LCK
Sbjct: 202 WEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCK 261

Query: 325 KDSVE-----------------NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           K   E                  A   FEEM+ + + P++  +N +I  +C +  +   +
Sbjct: 262 KGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGV 321

Query: 368 EFVGRMKDDE---CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
               RMK  +   C PN++TYNI++   C A +++   EL  +M +    P++ TY+ L+
Sbjct: 322 LLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALV 381

Query: 425 SSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484
             +    K D    A  LL EM   G  P  FT   +LN L   G    A   L      
Sbjct: 382 DGLCKLGKLDR---ACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKAR 438

Query: 485 GRLP 488
           G  P
Sbjct: 439 GSTP 442



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 178/380 (46%), Gaps = 26/380 (6%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
            + L   M      P   +++ + +    AG+ D A +++  M E  C   L ++ + + 
Sbjct: 163 AFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVT 222

Query: 182 LLCKEKKVEKAYNLFK--VFRGKFKADVISY-----------------NVIANGWCLVKR 222
            LCK  +V +A +  +  V +G  KAD +++                 N +    C    
Sbjct: 223 GLCKANRVAEACDCCRKMVTKGS-KADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGM 281

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK---CEIDVVT 279
            ++A +  +EM+ R   P+   +N ++    ++ ++ +    F  MK  K   C  ++ T
Sbjct: 282 LDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLET 341

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y  +V       ++  A+ + + M N G+ P V TY+A++  LCK   ++ A  + EEM 
Sbjct: 342 YNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMS 401

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            +G  P+S T   ++  L   G+++ AL  +  MK     P++ TYN L+   C AG I+
Sbjct: 402 KEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRID 461

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
             +    KM +  C P++ +Y I+I+++    +S     A  +  EMV RG +P    ++
Sbjct: 462 EAITFLAKMVAAKCTPDVFSYTIIITALC---RSGQAAGAHAIFQEMVKRGVLPDTVLYH 518

Query: 460 RVLNGLLLIGNQGLAKEILR 479
            +L+GL   G + LA E+L+
Sbjct: 519 SLLDGLARNGLEDLALELLK 538



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 115/450 (25%), Positives = 193/450 (42%), Gaps = 61/450 (13%)

Query: 79  LWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQ 138
           L+ +  KA    N++SY        S+    +  A RL +   +W     M   S  P  
Sbjct: 166 LFEYMAKAGCEPNVISY--------STLLDGLCKAGRLDEACRLW---EEMVEKSCVPDL 214

Query: 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN--LF 196
             +         A +   A      M   G +    +F+T++ +LCK+   E+A N  + 
Sbjct: 215 VAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIE 274

Query: 197 KVFRG-------KFKADVIS---------YNVIANGWCLVKRTNKAL---EVLKEMVDRG 237
            + R        K   ++IS         +N + +  C  KR    +   + +K M +  
Sbjct: 275 HLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFY 334

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
             PNL TYNI++    +A Q++EA     EM       DVVTY+ +V G   +G++ RA 
Sbjct: 335 CPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRAC 394

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
           ++ + M   GV P   T  +++  L K   V+ A+   E M  +G  P+  TYN ++ GL
Sbjct: 395 DLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGL 454

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
           C  G ++ A+ F+ +M   +C P+V +Y I+I   C +G+      +F++M     LP+ 
Sbjct: 455 CKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDT 514

Query: 418 DTYNILISSM---------------------FVRKKS--DDLLVAGK------LLIEMVD 448
             Y+ L+  +                     FV  K   D L  AGK      ++  M D
Sbjct: 515 VLYHSLLDGLARNGLEDLALELLKTSLCKPDFVMHKMVVDGLCKAGKAEDACEVVERMAD 574

Query: 449 RGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
            GF    FT+  V+ GL  +G    A++++
Sbjct: 575 AGFPADAFTYINVVRGLRKLGKVDKARQLV 604



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 105/192 (54%), Gaps = 5/192 (2%)

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMV-NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           YT +      +G+I     +FD +    G   SV TYN  +  L K ++ + A   F++M
Sbjct: 5   YTVVGEVLRHLGKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQM 64

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
             +GY P+  TY++V+RGLC  GE+++A E +G++++   + NV TY+++I   C A  +
Sbjct: 65  QRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRV 124

Query: 399 ERGLELFEKMGS-GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           +  LE+F+ M + G C+P++ T+N L+  +   ++  +  V   L   M   G  P   +
Sbjct: 125 DDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFV---LFEYMAKAGCEPNVIS 181

Query: 458 FNRVLNGLLLIG 469
           ++ +L+GL   G
Sbjct: 182 YSTLLDGLCKAG 193



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 107/274 (39%), Gaps = 40/274 (14%)

Query: 63  PSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDYR 120
           P+L     +VD + K       +A    N ++    Y  SP   ++   +D   +L    
Sbjct: 337 PNLETYNIMVDNLCK--AKQLDEAQELVNEMA---NYGLSPDVVTYSALVDGLCKLGKLD 391

Query: 121 TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180
               L+  M    + P   T A I      AGK D A+    +M   G    L ++NT+L
Sbjct: 392 RACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLL 451

Query: 181 DLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
           D LCK  ++++A   L K+   K   DV SY +I    C   +   A  + +EMV RG+ 
Sbjct: 452 DGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVL 511

Query: 240 PNLTTYN--------------------------------IVLKGYFRAGQIEEAWRFFLE 267
           P+   Y+                                +V+ G  +AG+ E+A      
Sbjct: 512 PDTVLYHSLLDGLARNGLEDLALELLKTSLCKPDFVMHKMVVDGLCKAGKAEDACEVVER 571

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           M       D  TY  +V G   +G++ +AR + D
Sbjct: 572 MADAGFPADAFTYINVVRGLRKLGKVDKARQLVD 605


>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
 gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
          Length = 813

 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 114/376 (30%), Positives = 187/376 (49%), Gaps = 8/376 (2%)

Query: 117 RDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG--CRQSLN 174
           R    +  L+HRM  L   P   ++ I+ +   S  K+ +A ++   M E G  C  +  
Sbjct: 158 RTAEALDILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAEGGAVCLPNAV 217

Query: 175 SFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
           ++NT++D   KE  V KA +LF   V RG    D+ +YN + N  C  +  +KA  +L++
Sbjct: 218 AYNTVIDGFFKEGDVNKACDLFNEMVQRG-ISPDLSTYNCVVNALCKARAMDKAEAILRQ 276

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           MVD+G+ P+  TYN ++ GY   GQ +EA R   +M  +    DVVT  +++      G+
Sbjct: 277 MVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGK 336

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           IK AR+VFD M   G    + +Y  M+     K  + +   +F  M+  G  P+S  +NV
Sbjct: 337 IKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNV 396

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           +I+     G ++RA      M++   EP+V TY+ +I   C  G+++  +E F +M    
Sbjct: 397 LIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQG 456

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
             P++ TY+ LI          DLL A  L+++M+++G  P    FN ++N L  +G   
Sbjct: 457 VAPSISTYHFLIQGFCTHG---DLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVM 513

Query: 473 LAKEILRLQSRCGRLP 488
            A+ I       G  P
Sbjct: 514 DAQNIFDFTISIGLHP 529



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 165/356 (46%), Gaps = 8/356 (2%)

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186
           ++M    + P+  T+  + + + + G   +A  + L M   G R  +  FN I++ LCK 
Sbjct: 450 NQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKL 509

Query: 187 KKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
            +V  A N+F          +V+ YN + +G+CLV +   AL V   MV  G+ PN+  Y
Sbjct: 510 GRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVY 569

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
             ++ GY + G+I+E    F E+  +  +     Y  I+HG    G    A+  F  M  
Sbjct: 570 GTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGRTVPAKVKFHEMTE 629

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G+     TY+ ++  L K    + AIL+F+E+       + TT N++I G+     +E 
Sbjct: 630 SGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAMNVKIDITTLNIMIAGMFQIRRVEE 689

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC-LPNLDTYNILI 424
           A +    +      P+V TY+I++      G +E   ++F  M +  C  PN    N ++
Sbjct: 690 AKDLFASISRSGLVPSVVTYSIMMTNLIKEGLVEEADDMFSSMENAGCEQPNSQLLNHVV 749

Query: 425 SSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
             +  ++   +++ AG  L ++ +R F     T   +++   L  ++G  +E +R 
Sbjct: 750 RELLEKR---EIVRAGTYLSKIDERSFSLDHSTTTLLID---LFSSKGTCREHIRF 799



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 170/351 (48%), Gaps = 6/351 (1%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           ++ I+   Y + G      ++F  M   G     + FN ++    K   +++A  +F   
Sbjct: 358 SYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEM 417

Query: 200 RGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
           R +  + DV++Y+ +    C + + + A+E   +M+D+G+ P+++TY+ +++G+   G +
Sbjct: 418 REQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDL 477

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
            +A    L+M  +    D+  +  I++    +G +  A+N+FD  ++ G+ P+V  YN +
Sbjct: 478 LKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTL 537

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           +   C    +ENA+ VF+ MV  G  PN   Y  ++ G C  G ++  L     +     
Sbjct: 538 MDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGI 597

Query: 379 EPNVQTYNILIRYFCDAGE-IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
           +P+   YNI++     AG  +   ++  E   SG+ +    TY+I++  +F    SD+ +
Sbjct: 598 KPSTTLYNIILHGLFQAGRTVPAKVKFHEMTESGIAMDRY-TYSIVLGGLFKNSCSDEAI 656

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           +  K L  M  +  +    T N ++ G+  I     AK++    SR G +P
Sbjct: 657 LLFKELHAMNVKIDIT---TLNIMIAGMFQIRRVEEAKDLFASISRSGLVP 704



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 149/301 (49%), Gaps = 12/301 (3%)

Query: 167 HGCR---QSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKR 222
           HG R    +L+++  ++D   +  + +     F +V +     D I  + +  G C  KR
Sbjct: 99  HGPRVLSPTLHTYGILMDCCTRAHRPKLTLAFFGQVLKTGLGIDTIMISNLLRGLCEAKR 158

Query: 223 TNKALEV-LKEMVDRGLNPNLTTYNIVLKGYF---RAGQIEEAWRFFLEMKKRKCEIDVV 278
           T +AL++ L  M   G  P++ +Y IVLK      ++GQ +E  R   E     C  + V
Sbjct: 159 TAEALDILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAE-GGAVCLPNAV 217

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
            Y T++ GF   G++ +A ++F+ MV  G+ P ++TYN ++  LCK  +++ A  +  +M
Sbjct: 218 AYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQM 277

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
           V KG +P++ TYN +I G   TG+ + A+    +M      P+V T N L+   C  G+I
Sbjct: 278 VDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKI 337

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           +   ++F+ M       ++ +Y I+++    +    DL    +L   M+  G  P    F
Sbjct: 338 KDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLT---ELFNLMLSDGIAPDSHIF 394

Query: 459 N 459
           N
Sbjct: 395 N 395



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 136/309 (44%), Gaps = 37/309 (11%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           LV +M +  + P    F  I       G+   A  IF      G   ++  +NT++D  C
Sbjct: 483 LVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYC 542

Query: 185 KEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
              K+E A  +F V      + +V+ Y  + NG+C V R ++ L + +E++ +G+ P+ T
Sbjct: 543 LVGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTT 602

Query: 244 TYNIVLKGYFRAGQI-----------------------------------EEAWRFFLEM 268
            YNI+L G F+AG+                                    +EA   F E+
Sbjct: 603 LYNIILHGLFQAGRTVPAKVKFHEMTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKEL 662

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
                +ID+ T   ++ G   +  ++ A+++F  +   G++PSV TY+ M+  L K+  V
Sbjct: 663 HAMNVKIDITTLNIMIAGMFQIRRVEEAKDLFASISRSGLVPSVVTYSIMMTNLIKEGLV 722

Query: 329 ENAILVFEEMVGKG-YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
           E A  +F  M   G   PNS   N V+R L    E+ RA  ++ ++ +     +  T  +
Sbjct: 723 EEADDMFSSMENAGCEQPNSQLLNHVVRELLEKREIVRAGTYLSKIDERSFSLDHSTTTL 782

Query: 388 LIRYFCDAG 396
           LI  F   G
Sbjct: 783 LIDLFSSKG 791



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 129/311 (41%), Gaps = 60/311 (19%)

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG--------- 286
           R L+P L TY I++    RA + +    FF ++ K    ID +  + ++ G         
Sbjct: 102 RVLSPTLHTYGILMDCCTRAHRPKLTLAFFGQVLKTGLGIDTIMISNLLRGLCEAKRTAE 161

Query: 287 -----------FGVVGEI----------------KRARNVFDGMVNGGV--LPSVATYNA 317
                       G V ++                 +A  +   M  GG   LP+   YN 
Sbjct: 162 ALDILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAEGGAVCLPNAVAYNT 221

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           +I    K+  V  A  +F EMV +G  P+ +TYN V+  LC    M++A   + +M D  
Sbjct: 222 VIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKG 281

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
             P+  TYN LI  +   G+ +  + + +KM S   LP++ T N L++S+    K  D  
Sbjct: 282 VLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKD-- 339

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG-------------NQGLAKE------IL 478
            A  +   M  +G     F++  +LNG    G             + G+A +      ++
Sbjct: 340 -ARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLI 398

Query: 479 RLQSRCGRLPR 489
           +  ++CG L R
Sbjct: 399 KAYAKCGMLDR 409


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 107/369 (28%), Positives = 183/369 (49%), Gaps = 12/369 (3%)

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
           A R+ D R ++        ++  P   T+ I+   Y + G+ + AVK+   M   G   +
Sbjct: 275 AGRVEDARQLF------DEMASPPDVVTYGILIHGYCALGELENAVKLLDDMVARGVEPN 328

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLK 231
              + +++ LLC + +V  A  + + +   K   D   Y  + +G+C       A     
Sbjct: 329 ATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSARRWFD 388

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
           EM  +GL  +  TY  ++ G  RAG+++EA +   EM  R+ ++D VTYT +V G+   G
Sbjct: 389 EMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRG 448

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
           ++  A  V + MV  GV P+V TY A+   LCK+  V+ A  +  EM  KG   N+ TYN
Sbjct: 449 KMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYN 508

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
            +I GLC  G +++A+  +  M     +P+V TY  LI   C +GE++R  +L ++M   
Sbjct: 509 SLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDN 568

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE-MVDRGFMPRKFTFNRVLNGLLLIGN 470
              P + TYN+L++   +  + +     GK L+E M+++   P   T+N ++    +  N
Sbjct: 569 GIKPTIVTYNVLMNGFCMSGRVE----GGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNN 624

Query: 471 QGLAKEILR 479
                EI +
Sbjct: 625 MKSTTEIYK 633



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 115/427 (26%), Positives = 193/427 (45%), Gaps = 56/427 (13%)

Query: 88  HFF-NILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAE 146
           HF  + +S +  ++  P+SFD  +              L+ R++   + P+ +    +  
Sbjct: 191 HFVEHYISTYKAFSSDPASFDLLLLCLPS-------APLLRRVRQYGISPSPEACNAVLS 243

Query: 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKAD 206
           R       D A+++F  + +    +++ S+N +L +LC   +VE A  LF         D
Sbjct: 244 RL----PLDEAIELFQGLPD----KNVCSYNILLKVLCGAGRVEDARQLFDEMASP--PD 293

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT----------------------- 243
           V++Y ++ +G+C +     A+++L +MV RG+ PN T                       
Sbjct: 294 VVTYGILIHGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVE 353

Query: 244 ------------TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
                        Y  VL G+   G +  A R+F EM+++    D VTYTT+++G    G
Sbjct: 354 DMVHHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAG 413

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
           E+K A  V   M+   +     TY  ++   CK+  +  A  V   MV +G  PN  TY 
Sbjct: 414 ELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYT 473

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
            +  GLC  G+++ A E +  M +   E N  TYN LI   C AG +++ +     M + 
Sbjct: 474 ALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAA 533

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
              P++ TY  LI ++    KS +L  A  LL EM+D G  P   T+N ++NG  + G  
Sbjct: 534 GLKPDVYTYTTLIDALC---KSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRV 590

Query: 472 GLAKEIL 478
              K++L
Sbjct: 591 EGGKKLL 597



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 153/333 (45%), Gaps = 6/333 (1%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M+   L     T+  +      AG+   A K+   M          ++  ++D  CK  K
Sbjct: 390 MQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGK 449

Query: 189 VEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
           + +A+ +    V RG    +V++Y  +++G C       A E+L EM ++GL  N  TYN
Sbjct: 450 MAEAFQVHNTMVQRG-VAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYN 508

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
            ++ G  +AG +++A R   +M     + DV TYTT++      GE+ RA ++   M++ 
Sbjct: 509 SLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDN 568

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G+ P++ TYN ++   C    VE    + E M+ K   PN+TTYN +++  C    M+  
Sbjct: 569 GIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKST 628

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
            E    M     EPN  TYNILI+  C A  ++       +M          +Y+ LI  
Sbjct: 629 TEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRL 688

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
           +  +KK    + A KL  +M   GF      +N
Sbjct: 689 LNKKKK---FVEARKLFHDMRKEGFTAEPDVYN 718



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 158/347 (45%), Gaps = 4/347 (1%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           R  + +    ++  M +  L   + T+ ++ + Y   GK   A ++  +M + G   ++ 
Sbjct: 411 RAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVV 470

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           ++  + D LCK+  V+ A  L      K  + +  +YN + NG C     ++A+  + +M
Sbjct: 471 TYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADM 530

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
              GL P++ TY  ++    ++G+++ A     EM     +  +VTY  +++GF + G +
Sbjct: 531 DAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRV 590

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           +  + + + M+   + P+  TYN++++  C  +++++   +++ M  +   PN  TYN++
Sbjct: 591 EGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNIL 650

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           I+G C    M+ A  F   M +        +Y+ LIR      +     +LF  M     
Sbjct: 651 IKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKFVEARKLFHDMRKEGF 710

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
               D YN  I   F     D+L     L  E+V+   +  K   ++
Sbjct: 711 TAEPDVYNFYIDFNF---NEDNLEATLALCDELVEASIVKSKAEMDQ 754



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 134/262 (51%), Gaps = 10/262 (3%)

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           ++A+E+ + + D+    N+ +YNI+LK    AG++E+A + F EM       DVVTY  +
Sbjct: 248 DEAIELFQGLPDK----NVCSYNILLKVLCGAGRVEDARQLFDEMASPP---DVVTYGIL 300

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +HG+  +GE++ A  + D MV  GV P+   Y +++ +LC K  V +A+ V E+MV    
Sbjct: 301 IHGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKV 360

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
           + +   Y  V+ G C+ G++  A  +   M+      +  TY  LI   C AGE++   +
Sbjct: 361 ILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEK 420

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           + ++M +     +  TY +L+     R K   +  A ++   MV RG  P   T+  + +
Sbjct: 421 VLQEMLARRLDVDEVTYTVLVDGYCKRGK---MAEAFQVHNTMVQRGVAPNVVTYTALSD 477

Query: 464 GLLLIGNQGLAKEILRLQSRCG 485
           GL   G+   A E+L   S  G
Sbjct: 478 GLCKQGDVQAANELLHEMSNKG 499


>gi|357508583|ref|XP_003624580.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499595|gb|AES80798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 109/407 (26%), Positives = 191/407 (46%), Gaps = 10/407 (2%)

Query: 51  TDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAI 110
           + P  + Q L   ++  + +LV +++ R+ N    A  FF      P Y HS   +   I
Sbjct: 113 SGPYEIKQKLEDCNVKASSELVVEVLSRVRNDWEAAFTFFLWAGKQPGYDHSVREYHSMI 172

Query: 111 DLAARLRDYRTVWTLVHRMKSLSLGP---TQKTFAIIAERYVSAGKADRAVKIFLSMHEH 167
            +  ++R + T W LV  M+    G    T +T  I+  +Y +     RA+  F +    
Sbjct: 173 SVLGKMRRFDTAWALVEEMRRGKTGESIVTPQTLLIMIRKYCAVHDVGRAINTFYAFKRF 232

Query: 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWC-LVKRTNKA 226
             +  L  F  +L  LC+ K V+ A +L    +  F  D  S+N+I NGWC L+     A
Sbjct: 233 NFQVGLYEFQGLLSALCRYKNVQDAEHLLFCNKNVFPLDTKSFNIILNGWCNLIVSARNA 292

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
             + +EM  R +  ++ +Y  ++  Y ++ ++    + F +MKKR    D   Y  ++  
Sbjct: 293 ERIWEEMSKRRIQHDVVSYASIISCYSKSSKLYRVLQLFEQMKKRNITPDRKVYNAVIFS 352

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
                 +K A N+   M +  V P   TYN++I+ LCK   ++ A  +F  M+ +G  P+
Sbjct: 353 LAKNRMVKEAVNLIIKMEDNNVTPDAITYNSLIKPLCKARKIDEAKEIFNVMLERGISPS 412

Query: 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
             T++   R L      E   E + +MK+  C P ++TY +LIR FC   +++    ++ 
Sbjct: 413 IRTFHAFFRIL---RVKEEVFELLDKMKELGCNPTIETYIMLIRKFCRWRQLDEVKRIWN 469

Query: 407 KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
            M       +  +Y +LI  +F+  K ++   A K  IEM ++GF+P
Sbjct: 470 AMREDGIGHDRSSYIVLIHGLFLNCKVEE---AYKYYIEMQEKGFLP 513



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 113/257 (43%), Gaps = 10/257 (3%)

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI---VHGFGVVGEI 293
           G + ++  Y+ ++    +  + + AW    EM++ K    +VT  T+   +  +  V ++
Sbjct: 160 GYDHSVREYHSMISVLGKMRRFDTAWALVEEMRRGKTGESIVTPQTLLIMIRKYCAVHDV 219

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP-NSTTYNV 352
            RA N F           +  +  ++  LC+  +V++A  +      K   P ++ ++N+
Sbjct: 220 GRAINTFYAFKRFNFQVGLYEFQGLLSALCRYKNVQDAEHLL--FCNKNVFPLDTKSFNI 277

Query: 353 VIRGLCHTGEMERALEFV-GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
           ++ G C+     R  E +   M     + +V +Y  +I  +  + ++ R L+LFE+M   
Sbjct: 278 ILNGWCNLIVSARNAERIWEEMSKRRIQHDVVSYASIISCYSKSSKLYRVLQLFEQMKKR 337

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
              P+   YN +I S+    K+  +  A  L+I+M D    P   T+N ++  L      
Sbjct: 338 NITPDRKVYNAVIFSL---AKNRMVKEAVNLIIKMEDNNVTPDAITYNSLIKPLCKARKI 394

Query: 472 GLAKEILRLQSRCGRLP 488
             AKEI  +    G  P
Sbjct: 395 DEAKEIFNVMLERGISP 411



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 103/222 (46%), Gaps = 7/222 (3%)

Query: 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           H   S+   I   ++      V  L  +MK  ++ P +K +  +            AV +
Sbjct: 306 HDVVSYASIISCYSKSSKLYRVLQLFEQMKKRNITPDRKVYNAVIFSLAKNRMVKEAVNL 365

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWC 218
            + M ++       ++N+++  LCK +K+++A  +F V   RG     + +++     + 
Sbjct: 366 IIKMEDNNVTPDAITYNSLIKPLCKARKIDEAKEIFNVMLERG-ISPSIRTFHAF---FR 421

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
           +++   +  E+L +M + G NP + TY ++++ + R  Q++E  R +  M++     D  
Sbjct: 422 ILRVKEEVFELLDKMKELGCNPTIETYIMLIRKFCRWRQLDEVKRIWNAMREDGIGHDRS 481

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
           +Y  ++HG  +  +++ A   +  M   G LP   T  +M+Q
Sbjct: 482 SYIVLIHGLFLNCKVEEAYKYYIEMQEKGFLPEPKT-ESMLQ 522



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 78/178 (43%), Gaps = 9/178 (5%)

Query: 288 GVVGEIKRARNVFDG----MVNGGVLP-SVATYNAMIQVLCKKD-SVENAILVFEEMVGK 341
           G++  + R +NV D       N  V P    ++N ++   C    S  NA  ++EEM  +
Sbjct: 243 GLLSALCRYKNVQDAEHLLFCNKNVFPLDTKSFNIILNGWCNLIVSARNAERIWEEMSKR 302

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
               +  +Y  +I     + ++ R L+   +MK     P+ + YN +I        ++  
Sbjct: 303 RIQHDVVSYASIISCYSKSSKLYRVLQLFEQMKKRNITPDRKVYNAVIFSLAKNRMVKEA 362

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
           + L  KM      P+  TYN LI  +   +K D+   A ++   M++RG  P   TF+
Sbjct: 363 VNLIIKMEDNNVTPDAITYNSLIKPLCKARKIDE---AKEIFNVMLERGISPSIRTFH 417


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 110/424 (25%), Positives = 195/424 (45%), Gaps = 25/424 (5%)

Query: 87  LHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAE 146
           +  F+ L     Y HS  +++  +D  A+    +  +    +M+     P   T++I+  
Sbjct: 22  VRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLR 81

Query: 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR--GKFK 204
               AG+ D+A ++   + E G + ++ +++ ++D  CK  +V+ A  +FK     G   
Sbjct: 82  GLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCV 141

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
            DV+++N +  G C  +R ++A  + + M   G  PN+ +Y+ +L G  +AG+++EA R 
Sbjct: 142 PDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRL 201

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
           + EM ++ C  D+V YT+ V G      +  A +    MV  G       ++ +I +LCK
Sbjct: 202 WEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCK 261

Query: 325 KDSVE-----------------NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           K   E                  A   FEEM+ + + P++  +N +I  +C +  +   +
Sbjct: 262 KGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGV 321

Query: 368 EFVGRMKDDE---CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
               RMK  +   C PN++TYNI++   C A +++   EL  +M +    P++ TY+ L+
Sbjct: 322 LLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALV 381

Query: 425 SSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484
             +    K D    A  LL EM   G  P  FT   +LN L   G    A   L      
Sbjct: 382 DGLCKLGKLDR---ACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKAR 438

Query: 485 GRLP 488
           G  P
Sbjct: 439 GSTP 442



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 178/380 (46%), Gaps = 26/380 (6%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
            + L   M      P   +++ + +    AG+ D A +++  M E  C   L ++ + + 
Sbjct: 163 AFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVT 222

Query: 182 LLCKEKKVEKAYNLFK--VFRGKFKADVISY-----------------NVIANGWCLVKR 222
            LCK  +V +A +  +  V +G  KAD +++                 N +    C    
Sbjct: 223 GLCKANRVAEACDCCRKMVTKGS-KADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGM 281

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK---CEIDVVT 279
            ++A +  +EM+ R   P+   +N ++    ++ ++ +    F  MK  K   C  ++ T
Sbjct: 282 LDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLET 341

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y  +V       ++  A+ + + M N G+ P V TY+A++  LCK   ++ A  + EEM 
Sbjct: 342 YNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMS 401

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            +G  P+S T   ++  L   G+++ AL  +  MK     P++ TYN L+   C AG I+
Sbjct: 402 KEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRID 461

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
             +    KM +  C P++ +Y I+I+++    +S     A  +  EMV RG +P    ++
Sbjct: 462 EAITFLAKMVAAKCTPDVFSYTIIITALC---RSGQAAGAHAIFQEMVKRGVLPDTVLYH 518

Query: 460 RVLNGLLLIGNQGLAKEILR 479
            +L+GL   G + LA E+L+
Sbjct: 519 SLLDGLARNGLEDLALELLK 538



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 115/450 (25%), Positives = 194/450 (43%), Gaps = 61/450 (13%)

Query: 79  LWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQ 138
           L+ +  KA    N++SY        S+    +  A RL +   +W     M   S  P  
Sbjct: 166 LFEYMAKAGCEPNVISY--------STLLDGLCKAGRLDEACRLW---EEMVEKSCVPDL 214

Query: 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN--LF 196
             +         A +   A      M   G +    +F+T++ +LCK+   E+A N  + 
Sbjct: 215 VAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIE 274

Query: 197 KVFRG-------KFKADVIS---------YNVIANGWCLVKRTNKAL---EVLKEMVDRG 237
            + R        K   ++IS         +N + +  C  KR    +   + +K M +  
Sbjct: 275 HLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFY 334

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
             PNL TYNI++    +A Q++EA     EM       DVVTY+ +V G   +G++ RA 
Sbjct: 335 CPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRAC 394

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
           ++ + M   GV P   T  +++  L K   V+ A+   E M  +G  P+  TYN ++ GL
Sbjct: 395 DLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGL 454

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
           C  G ++ A+ F+ +M   +C P+V +Y I+I   C +G+      +F++M     LP+ 
Sbjct: 455 CKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDT 514

Query: 418 DTYNILISSM---------------------FVRKKS--DDLLVAGK------LLIEMVD 448
             Y+ L+  +                     FV  K   D L  AGK      ++  M D
Sbjct: 515 VLYHSLLDGLARNGLEDLALELLKTSLCKPDFVMHKMVLDGLCKAGKAEDACEVVERMAD 574

Query: 449 RGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
            GF    FT+  V++GL  +G    A++++
Sbjct: 575 AGFPADAFTYISVVSGLRKLGKVDKARQLV 604



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 105/192 (54%), Gaps = 5/192 (2%)

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMV-NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           YT +      +G+I     +FD +    G   SV TYN  +  L K ++ + A   F++M
Sbjct: 5   YTVVGEVLRHLGKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQM 64

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
             +GY P+  TY++V+RGLC  GE+++A E +G++++   + NV TY+++I   C A  +
Sbjct: 65  QRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRV 124

Query: 399 ERGLELFEKMGS-GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           +  LE+F+ M S G C+P++ T+N L+  +   ++  +  V   L   M   G  P   +
Sbjct: 125 DDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFV---LFEYMAKAGCEPNVIS 181

Query: 458 FNRVLNGLLLIG 469
           ++ +L+GL   G
Sbjct: 182 YSTLLDGLCKAG 193



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 108/274 (39%), Gaps = 40/274 (14%)

Query: 63  PSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDYR 120
           P+L     +VD + K       +A    N ++    Y  SP   ++   +D   +L    
Sbjct: 337 PNLETYNIMVDNLCK--AKQLDEAQELVNEMA---NYGLSPDVVTYSALVDGLCKLGKLD 391

Query: 121 TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180
               L+  M    + P   T A I      AGK D A+    +M   G    L ++NT+L
Sbjct: 392 RACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLL 451

Query: 181 DLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
           D LCK  ++++A   L K+   K   DV SY +I    C   +   A  + +EMV RG+ 
Sbjct: 452 DGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVL 511

Query: 240 PNLTTYN--------------------------------IVLKGYFRAGQIEEAWRFFLE 267
           P+   Y+                                +VL G  +AG+ E+A      
Sbjct: 512 PDTVLYHSLLDGLARNGLEDLALELLKTSLCKPDFVMHKMVLDGLCKAGKAEDACEVVER 571

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           M       D  TY ++V G   +G++ +AR + D
Sbjct: 572 MADAGFPADAFTYISVVSGLRKLGKVDKARQLVD 605


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 123/417 (29%), Positives = 204/417 (48%), Gaps = 15/417 (3%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRT---VWTLVHRMK---SLSLGPTQK 139
           AL  F+ L  H   A S  +F+H +++ AR R   T     +L +RM    S  + P   
Sbjct: 33  ALKLFDELLPHARPA-SVRAFNHLLNVVARARCSSTSELAVSLFNRMARACSNKVRPDLC 91

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           T++I+   +   G+ +     F  + + G R +    N +L+ LC  K+V++A ++    
Sbjct: 92  TYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMDILLRR 151

Query: 200 RGKFKA--DVISYNVIANGWCLVKRTNKALEVLKEMVDRG---LNPNLTTYNIVLKGYFR 254
             +F    +V+S N +  G C  KR  +ALE+L  M + G     PN+ TYN ++ G  +
Sbjct: 152 MPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCK 211

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
           A  ++ A      M  +  ++DVVTY+TI+ G      + RA  V   M++ GV P V T
Sbjct: 212 AQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVT 271

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN +I  LCK  +V+ A  V + M+ KG  P+  TYN +I GLC    ++RA   +  M 
Sbjct: 272 YNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMI 331

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
           D + +P++QTYN LI  +   GE +  +   E+M +    P++ TY++L+  +    K  
Sbjct: 332 DKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCT 391

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           +   A K+   M+ +G  P    +  +L+G    G      ++L L    G  P  +
Sbjct: 392 E---ARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNY 445



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/318 (33%), Positives = 159/318 (50%), Gaps = 8/318 (2%)

Query: 150 SAGKADRAVKIFLS-MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR----GKFK 204
            A + D A+ I L  M E GC  ++ S NT+L  LC EK+VE+A  L         G   
Sbjct: 137 DAKRVDEAMDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCT 196

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
            +V++YN I +G C  +  ++A  VL+ M+D+G+  ++ TY+ ++ G  +A  ++ A   
Sbjct: 197 PNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGV 256

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
              M  +  + DVVTY TI+ G      + RA  V   M++ GV P V TYN +I  LCK
Sbjct: 257 LQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCK 316

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
             +V+ A  V + M+ K   P+  TYN +I G   TGE +  +  +  M     +P+V T
Sbjct: 317 AQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVT 376

Query: 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLI 444
           Y++L+ Y C  G+     ++F  M      PN+  Y IL+     R    DL     LL 
Sbjct: 377 YSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLT---DLLD 433

Query: 445 EMVDRGFMPRKFTFNRVL 462
            MV  G  P  + FN VL
Sbjct: 434 LMVANGISPNNYIFNIVL 451



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 173/358 (48%), Gaps = 7/358 (1%)

Query: 125 LVHRMKSLSLG---PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
           L+H M     G   P   T+  I +    A   DRA  +   M + G +  + +++TI+D
Sbjct: 183 LLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIID 242

Query: 182 LLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
            LCK + V++A  + +    K  K DV++YN I +G C  +  ++A  VL+ M+D+G+ P
Sbjct: 243 GLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKP 302

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           ++ TYN ++ G  +A  ++ A      M  +  + D+ TY  ++HG+   GE K      
Sbjct: 303 DVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRL 362

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           + M   G+ P V TY+ ++  LCK      A  +F  M+ KG  PN T Y +++ G    
Sbjct: 363 EEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAAR 422

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
           G +    + +  M  +   PN   +NI++  +     I+  + +F +M      P++ TY
Sbjct: 423 GAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTY 482

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
            ILI ++    + DD ++      +M++ G  P    FN ++ GL  +     A+E+ 
Sbjct: 483 GILIDALCKLGRVDDAVLK---FNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELF 537



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 181/400 (45%), Gaps = 39/400 (9%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++  M    + P   T+  I +    A   DRA  +   M + G +  + ++NTI+D LC
Sbjct: 256 VLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLC 315

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K + V++A  + + +     K D+ +YN + +G+       + +  L+EM  RGL+P++ 
Sbjct: 316 KAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVV 375

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY+++L    + G+  EA + F  M ++  + +V  Y  ++HG+   G I    ++ D M
Sbjct: 376 TYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLM 435

Query: 304 V-NG----------------------------------GVLPSVATYNAMIQVLCKKDSV 328
           V NG                                  G+ P V TY  +I  LCK   V
Sbjct: 436 VANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRV 495

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           ++A+L F +M+  G  PNS  +N ++ GLC     E+A E    M D    PNV  +N +
Sbjct: 496 DDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTI 555

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           +   C+ G++     L + M      PN+ +YN LI    +  ++D+   A +LL  MV 
Sbjct: 556 MCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDE---AAQLLDVMVS 612

Query: 449 RGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            G  P   +++ +L G    G    A  + R   R G  P
Sbjct: 613 VGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTP 652



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 170/353 (48%), Gaps = 7/353 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M +  + P    F I+   Y      D A+ IF  M +HG    + ++  ++D LC
Sbjct: 431 LLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALC 490

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  +V+ A   F ++       + + +N +  G C V R  KA E+  EM D+G+ PN+ 
Sbjct: 491 KLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVV 550

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            +N ++      GQ+  A R    M++     +V++Y T++ G  + G    A  + D M
Sbjct: 551 FFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVM 610

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           V+ G+ P + +Y+ +++  CK   ++NA  +F EM+ KG  P + TY+ +++GL HT   
Sbjct: 611 VSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRF 670

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             A E    M     + ++ TYNI++   C    ++   ++F+ + S    PN+ T+ I+
Sbjct: 671 SEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIM 730

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKE 476
           I  +F   +  D   A  L   +   G +P   T+  ++  ++    +GL  E
Sbjct: 731 IDVLFKGGRKKD---AMDLFASIPSHGLVPNVVTYCIMMKNII---QEGLLDE 777



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 103/370 (27%), Positives = 178/370 (48%), Gaps = 9/370 (2%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAI--DLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           +A+H F+ +S H     SP    + I  D   +L          ++M +  + P    F 
Sbjct: 462 EAMHIFSRMSQH---GLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFN 518

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RG 201
            +     +  + ++A ++F  M + G R ++  FNTI+  LC E +V  A  L     R 
Sbjct: 519 SLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERV 578

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
             + +VISYN +  G CL  RT++A ++L  MV  GL P+L +Y+ +L+GY + G+I+ A
Sbjct: 579 GVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNA 638

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
           +  F EM ++      VTY+TI+ G         A+ ++  M+  G    + TYN ++  
Sbjct: 639 YCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNG 698

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           LCK + V+ A  +F+ +  K   PN  T+ ++I  L   G  + A++    +      PN
Sbjct: 699 LCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPN 758

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
           V TY I+++     G ++    LF  M    C P+    N +I S+  R    +++ AG 
Sbjct: 759 VVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDSVMLNAIIRSLLGRG---EIMRAGA 815

Query: 442 LLIEMVDRGF 451
            L ++ +  F
Sbjct: 816 YLSKIDEMNF 825



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 168/354 (47%), Gaps = 4/354 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++  M    + P  +T+  +   Y+S G+    V+    M+  G    + +++ +LD LC
Sbjct: 326 VLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLC 385

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  K  +A  +F  + R   K +V  Y ++ +G+          ++L  MV  G++PN  
Sbjct: 386 KNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNY 445

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            +NIVL  Y +   I+EA   F  M +     DVVTY  ++     +G +  A   F+ M
Sbjct: 446 IFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQM 505

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           +N GV P+   +N+++  LC  D  E A  +F EM  +G  PN   +N ++  LC+ G++
Sbjct: 506 INDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQV 565

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             A   +  M+     PNV +YN LI   C AG  +   +L + M S    P+L +Y+ L
Sbjct: 566 MVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTL 625

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
           +       + D+   A  L  EM+ +G  P   T++ +L GL        AKE+
Sbjct: 626 LRGYCKTGRIDN---AYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKEL 676



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 109/393 (27%), Positives = 179/393 (45%), Gaps = 50/393 (12%)

Query: 143 IIAERYVSAGKA-DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK---KVEKAYNLF-- 196
           +IA+R  S     D A+K+F  +  H    S+ +FN +L+++ + +     E A +LF  
Sbjct: 18  VIADRARSGSLGIDDALKLFDELLPHARPASVRAFNHLLNVVARARCSSTSELAVSLFNR 77

Query: 197 --KVFRGKFKADVISYNVIA-----------------------------------NGWCL 219
             +    K + D+ +Y+++                                    NG C 
Sbjct: 78  MARACSNKVRPDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCD 137

Query: 220 VKRTNKALEV-LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR---KCEI 275
            KR ++A+++ L+ M + G  PN+ + N +LKG     ++EEA      M +     C  
Sbjct: 138 AKRVDEAMDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTP 197

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
           +VVTY TI+ G      + RA  V   M++ GV   V TY+ +I  LCK  +V+ A  V 
Sbjct: 198 NVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVL 257

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
           + M+ KG  P+  TYN +I GLC    ++RA   +  M D   +P+V TYN +I   C A
Sbjct: 258 QHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKA 317

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
             ++R   + + M      P++ TYN LI       +  +++   + L EM  RG  P  
Sbjct: 318 QAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVV---RRLEEMYARGLDPDV 374

Query: 456 FTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            T++ +L+ L   G    A++I     R G  P
Sbjct: 375 VTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKP 407



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 135/269 (50%), Gaps = 1/269 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M+ + + P   ++  +   +  AG+ D A ++   M   G +  L S++T+L   C
Sbjct: 571 LIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYC 630

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  +++ AY LF+ + R       ++Y+ I  G    +R ++A E+   M+  G   ++ 
Sbjct: 631 KTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIY 690

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYNI+L G  +   ++EA++ F  +  +    +++T+T ++      G  K A ++F  +
Sbjct: 691 TYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASI 750

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            + G++P+V TY  M++ + ++  ++    +F  M   G  P+S   N +IR L   GE+
Sbjct: 751 PSHGLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDSVMLNAIIRSLLGRGEI 810

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYF 392
            RA  ++ ++ +        T ++LI  F
Sbjct: 811 MRAGAYLSKIDEMNFSLEASTTSLLISLF 839


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 107/360 (29%), Positives = 183/360 (50%), Gaps = 8/360 (2%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            RL + + V  +   M S+  GP   T+  +       G    A ++   M   GC  ++
Sbjct: 385 GRLDEAKAV--MHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNV 442

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKE 232
            ++  ++D  CKE ++E+A N+     GK  A + + YN + +  C  ++   AL +  +
Sbjct: 443 ITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGD 502

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M  +G  P++ T+N ++ G  +  + EEA   + +M       + +TY T++H F   G 
Sbjct: 503 MSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGA 562

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           ++ A  + + M+  G      TYN +I+ LC+  ++E  + +FE+M+ KG  PN+ + N+
Sbjct: 563 MQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNI 622

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG-SG 411
           +I GLC TG ++ ALEF+  M      P++ TYN LI   C  G  +  L LF+K+   G
Sbjct: 623 LINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEG 682

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
           +C P+  TYN LIS        DD   A  LL   VD GF+P + T+  +++  +  G+Q
Sbjct: 683 IC-PDAITYNTLISWHCKEGMFDD---AHLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQ 738



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 128/495 (25%), Positives = 207/495 (41%), Gaps = 113/495 (22%)

Query: 92  ILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149
           +L     Y+  P+  S++  +D+       + V  + + M S  + PT  TF ++ +   
Sbjct: 187 LLDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALC 246

Query: 150 SAGKADRAVKIFLSMHEHGC------RQSL-----------------------------N 174
              + D A  +   M  HGC       Q+L                             N
Sbjct: 247 LVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVN 306

Query: 175 SFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVL-- 230
           +FN  +  LCK  ++ +A  L    + RG F  +  +Y V+ +G C + + ++A  +L  
Sbjct: 307 TFNDAIHGLCKMLRIHEAAKLVDRMLLRG-FTPNSFTYGVLMHGLCRMGKVDEARMLLNK 365

Query: 231 ------------------------------KEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
                                         + M+  G  P++ TYN ++ G  + G +  
Sbjct: 366 VPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVS 425

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
           A     EM+ + CE +V+TYT ++  F   G ++ ARNV D M   G+  +   YN +I 
Sbjct: 426 ARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLIS 485

Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT-------------------- 360
            LCK + V++A+ +F +M  KG  P+  T+N +I GLC                      
Sbjct: 486 ALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIA 545

Query: 361 ---------------GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
                          G M+ AL+ V  M    C  +  TYN LI+  C AG IE+GL LF
Sbjct: 546 NTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALF 605

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           E M S    PN  + NILI+ +    ++ ++  A + L +M+ RG  P   T+N ++NGL
Sbjct: 606 EDMMSKGLNPNNISCNILINGLC---RTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGL 662

Query: 466 LLIGNQGLAKEILRL 480
                 G A+E L L
Sbjct: 663 C---KTGRAQEALNL 674



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 112/415 (26%), Positives = 180/415 (43%), Gaps = 39/415 (9%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           ++  F        Y H    +   ID      +++T   L+ +MK   +   +  F +I 
Sbjct: 112 SMELFQWAGTQKGYCHMFDVYYMLIDKLGAAGEFKTTDALLMQMKQEGIVFRESLFILIM 171

Query: 146 ERYVSAGKADRAVKIFLSMHE-HGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKF 203
           + Y  AG   +A ++ L M   + C  +  S+N +LD+L      +   N+F ++     
Sbjct: 172 KHYGRAGLPGQATRLLLDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGI 231

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
              V ++ V+    CLV   + A  +LK+M   G  PN   Y  ++    + G++ E  +
Sbjct: 232 SPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLK 291

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
              EM    C  DV T+   +HG   +  I  A  + D M+  G  P+  TY  ++  LC
Sbjct: 292 LLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLC 351

Query: 324 KKDSVENA-----------ILVF---------------------EEMVGKGYMPNSTTYN 351
           +   V+ A           +++F                     E M+  G  P+  TYN
Sbjct: 352 RMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYN 411

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GS 410
            +I GLC  G +  A E +  M+   CEPNV TY ILI  FC  G +E    + ++M G 
Sbjct: 412 TLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGK 471

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           G+ L N   YN LIS++   +K  D L    +  +M  +G  P  FTFN ++ GL
Sbjct: 472 GLAL-NAVGYNCLISALCKDEKVQDAL---NMFGDMSSKGCKPDIFTFNSLIFGL 522



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 144/311 (46%), Gaps = 36/311 (11%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L++ M+     P   T+ I+ +R+   G+ + A  +   M   G   +   +N ++  LC
Sbjct: 429 LMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALC 488

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K++KV+ A N+F     K  K D+ ++N +  G C V +  +AL + ++M+  G+  N  
Sbjct: 489 KDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTI 548

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN ++  + R G ++EA +   +M  R C +D +TY  ++      G I++   +F+ M
Sbjct: 549 TYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDM 608

Query: 304 ---------------VNG--------------------GVLPSVATYNAMIQVLCKKDSV 328
                          +NG                    G+ P + TYN++I  LCK    
Sbjct: 609 MSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRA 668

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           + A+ +F+++  +G  P++ TYN +I   C  G  + A   + R  D    PN  T+ IL
Sbjct: 669 QEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYIL 728

Query: 389 IRYFCDAGEIE 399
           +  F   G+ E
Sbjct: 729 VSNFIKEGDQE 739



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 18/156 (11%)

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           KGY      Y ++I  L   GE +     + +MK +        + ++++++  AG   +
Sbjct: 123 KGYCHMFDVYYMLIDKLGAAGEFKTTDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQ 182

Query: 401 GLELFEKM-GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK-------LLIEMVDRGFM 452
              L   M G   C P   +YN+++          D+L+AG        +  EM+ +G  
Sbjct: 183 ATRLLLDMRGVYSCEPTFRSYNVVL----------DVLLAGNCPKVVPNVFYEMLSKGIS 232

Query: 453 PRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           P  +TF  V+  L L+     A  +L+  +R G +P
Sbjct: 233 PTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVP 268


>gi|356523145|ref|XP_003530202.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 141/496 (28%), Positives = 230/496 (46%), Gaps = 38/496 (7%)

Query: 1   MFALLRKPPKNHLHFFCIYRGLSPLTTTSPAPLPPAAADPAALASLILTSTDPRTLTQTL 60
           + ++L +PP+  LH F      +    + PA    AAA P++              +  +
Sbjct: 2   LHSILSRPPRRKLHPFSTAAAAAITANSVPA----AAALPSS--------------SFRI 43

Query: 61  HCPSLHW----TPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARL 116
             P   W    TP  +  +I R  +  L +L  F+    HP+ +H+P    HA+ L  +L
Sbjct: 44  QPPIYPWPRRLTPHNLASLISRQHDPDL-SLQIFH--HAHPSLSHAPQPL-HALFL--KL 97

Query: 117 RDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSF 176
              R  + L   +  L   P +     +   Y  AGK   A++IFL     G R    S 
Sbjct: 98  SRARRFYHLESLLTHLPNPPPEPPLTTLIRAYGLAGKPLSALRIFLKFQPLGVR----SL 153

Query: 177 NTILDLLCKEKKVEKAYNLFKVFRGKFK--ADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           N +L+ L + K+   A+++FK    KF+   +V+S N++    C     + A+ VL EM 
Sbjct: 154 NALLNALVQNKRHRLAHSVFKSSTEKFRLVPNVVSCNILLKALCKRNEVDVAVRVLDEMS 213

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
             GL PN+ +Y+ VL G+   G +E A R F E+  +    DV +YT ++ GF  +G++ 
Sbjct: 214 LMGLVPNVVSYSTVLGGFVFKGDMESAMRVFGEILDKGWMPDVTSYTVLMSGFCRLGKLV 273

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
            A  + D M    V PS  TY  MI+  CK      A+ + E+MV KG +P+S     V+
Sbjct: 274 DAIRMMDLMEENRVQPSEVTYGVMIEAYCKGRKPGEAVNLLEDMVEKGLVPSSVLCCKVV 333

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
             LC  G +ERA E    +            + ++ + C  G++     + +++  G  +
Sbjct: 334 DLLCEEGSVERACEVWRGVVRKGWRVGGAVVSTIVHWLCKEGKVVEARGVLDELEKGE-V 392

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
            +L TYN LI+ M  R +   L  AG+L  EMV++G +P  FT+N ++ G   +G+   A
Sbjct: 393 ASLMTYNTLIAGMCERGQ---LCEAGRLWDEMVEKGRVPNAFTYNVLMKGFCKVGDVKEA 449

Query: 475 KEILRLQSRCGRLPRQ 490
             +L      G LP +
Sbjct: 450 IRVLEEMVESGCLPNK 465



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 143/281 (50%), Gaps = 11/281 (3%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           +D+A R+ D          M  + L P   +++ +   +V  G  + A+++F  + + G 
Sbjct: 202 VDVAVRVLD---------EMSLMGLVPNVVSYSTVLGGFVFKGDMESAMRVFGEILDKGW 252

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTNKALE 228
              + S+  ++   C+  K+  A  +  +    + +   ++Y V+   +C  ++  +A+ 
Sbjct: 253 MPDVTSYTVLMSGFCRLGKLVDAIRMMDLMEENRVQPSEVTYGVMIEAYCKGRKPGEAVN 312

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           +L++MV++GL P+      V+      G +E A   +  + ++   +     +TIVH   
Sbjct: 313 LLEDMVEKGLVPSSVLCCKVVDLLCEEGSVERACEVWRGVVRKGWRVGGAVVSTIVHWLC 372

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G++  AR V D +  G V  S+ TYN +I  +C++  +  A  +++EMV KG +PN+ 
Sbjct: 373 KEGKVVEARGVLDELEKGEV-ASLMTYNTLIAGMCERGQLCEAGRLWDEMVEKGRVPNAF 431

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
           TYNV+++G C  G+++ A+  +  M +  C PN  T++IL+
Sbjct: 432 TYNVLMKGFCKVGDVKEAIRVLEEMVESGCLPNKSTFSILV 472



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 81/167 (48%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M    L P+      + +     G  +RA +++  +   G R      +TI+  LC
Sbjct: 313 LLEDMVEKGLVPSSVLCCKVVDLLCEEGSVERACEVWRGVVRKGWRVGGAVVSTIVHWLC 372

Query: 185 KEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
           KE KV +A  +         A +++YN +  G C   +  +A  +  EMV++G  PN  T
Sbjct: 373 KEGKVVEARGVLDELEKGEVASLMTYNTLIAGMCERGQLCEAGRLWDEMVEKGRVPNAFT 432

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
           YN+++KG+ + G ++EA R   EM +  C  +  T++ +V G  + G
Sbjct: 433 YNVLMKGFCKVGDVKEAIRVLEEMVESGCLPNKSTFSILVDGISLSG 479


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 107/380 (28%), Positives = 189/380 (49%), Gaps = 7/380 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S+   I+   R   +     +V  M++    P   T+  + +    AG+ D A+++   M
Sbjct: 46  SYSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEM 105

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
            ++GC   + ++N ++  L K  ++ +A+ LF   R +    D  +YN +  G   V R+
Sbjct: 106 RDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRS 165

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            KA+E+L+EM   G  P++ TY+ ++ G  + G+  +A++ F EMK+R  + D +T+T +
Sbjct: 166 QKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTAL 225

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +   G  G +  A  + D M   GV P V TYNA+I    K   +  A  + +EM   G 
Sbjct: 226 MDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGC 285

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+  TY+ +I GL    +++ A + + +M+ + C P+  TYN LI     AG +     
Sbjct: 286 KPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGR 345

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           LF++M S  C P++ TY+ LI+++    + +   V   L  EM   G  P  FT+  ++ 
Sbjct: 346 LFDRMKSKGCNPDVVTYSTLITALGKAARVESACV---LFEEMESVGIQPDLFTYCSIIT 402

Query: 464 GLLLIGNQGLAKEILRLQSR 483
              ++G  G   +  RL S 
Sbjct: 403 ---VLGKAGQVDDADRLFSE 419



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 132/498 (26%), Positives = 214/498 (42%), Gaps = 79/498 (15%)

Query: 66  HWTPQLVDQ--IIKRL-----WNHALKALHFFNILSYHP---TYA------HSPSSFDHA 109
            WTP +V    +I  L     W  AL+ +         P   TY            FD A
Sbjct: 39  KWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEA 98

Query: 110 IDLAARLRDYRTV----------------------WTLVHRMKSLSLGPTQKTFAIIAER 147
           + L A +RD   V                      +TL   M+     P   T+  +   
Sbjct: 99  LRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYG 158

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKA 205
               G++ +A+++   M  HGC   + ++++++  L K+ +  KA+ LF+    RG+ K 
Sbjct: 159 LGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGR-KP 217

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           D I++  + +      R + ALE+L EM +RG+ P + TYN ++ G+ + G + EA+   
Sbjct: 218 DSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLL 277

Query: 266 LEMKKRKCEIDVVTYT-----------------------------------TIVHGFGVV 290
            EMK+  C+ DVVTY+                                   T+++G G  
Sbjct: 278 DEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKA 337

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           G +  A  +FD M + G  P V TY+ +I  L K   VE+A ++FEEM   G  P+  TY
Sbjct: 338 GLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTY 397

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
             +I  L   G+++ A      M+     P+V TYN  +      G  +   ++FE M  
Sbjct: 398 CSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKE 457

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
              LP++ TY+ L+  +   K+ DD   A  LL E++++G       F+  L  L   GN
Sbjct: 458 SGLLPDVATYDALLLGLSKTKEVDD---ACGLLKELIEQGCAFDSLKFDECLEILTSWGN 514

Query: 471 QGLAKEILRLQSRCGRLP 488
              A E+L+  +  G  P
Sbjct: 515 VDEAHELLQFANSKGLWP 532



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 180/362 (49%), Gaps = 4/362 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ++  A+         L   +K+    P   +++ +      AGK + A+++   M
Sbjct: 11  TYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEM 70

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
              GC+ +L ++NT++D L K  + ++A  L    R      DV +YN + +      R 
Sbjct: 71  QAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRL 130

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           ++A  +  EM +RG  P+  TYN ++ G  + G+ ++A     EM++  C  DV+TY+++
Sbjct: 131 SEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSL 190

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G G  GE  +A  +F  M   G  P   T+ A++  L K   V++A+ + +EM  +G 
Sbjct: 191 ITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGV 250

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P   TYN +I G    G++  A   +  MK + C+P+V TY+ LI     A +++   +
Sbjct: 251 KPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQ 310

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           + +KM    C P+  TYN LI+ +    K+  L  AG+L   M  +G  P   T++ ++ 
Sbjct: 311 VLKKMEKEGCPPDTITYNTLINGL---GKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLIT 367

Query: 464 GL 465
            L
Sbjct: 368 AL 369



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 164/347 (47%), Gaps = 6/347 (1%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            ++ D    + L+  MK     P   T++ +    + A + D A ++   M + GC    
Sbjct: 265 GKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDT 324

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKE 232
            ++NT+++ L K   +  A  LF   + K    DV++Y+ +        R   A  + +E
Sbjct: 325 ITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEE 384

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M   G+ P+L TY  ++    +AGQ+++A R F EM+ +    DV+TY   ++  G  G 
Sbjct: 385 MESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGR 444

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
            K AR +F+ M   G+LP VATY+A++  L K   V++A  + +E++ +G   +S  ++ 
Sbjct: 445 FKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDE 504

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
            +  L   G ++ A E +         P   +YN LI     AG +       E +    
Sbjct: 505 CLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQG 564

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG--FMPRKFT 457
             P++ +Y+ LIS++    + D    A +LL EM  RG    PR ++
Sbjct: 565 GKPDIVSYSSLISALGQTGQID---TAFELLEEMSKRGLKLSPRSYS 608



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 79/240 (32%), Positives = 120/240 (50%), Gaps = 3/240 (1%)

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
           +PN+ TYN +L    +AGQ EEA   F E+K  K   DVV+Y+ +++  G  G+ + A  
Sbjct: 6   SPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALE 65

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
           V   M   G  P++ TYN ++  L K    + A+ +  EM   G +P+  TYN +I  L 
Sbjct: 66  VVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLG 125

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLD 418
             G +  A      M++  C P+  TYN LI      G  ++ +EL E+M    C P++ 
Sbjct: 126 KAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVM 185

Query: 419 TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           TY+ LI+ +    K  + + A KL  EM  RG  P   TF  +++ L   G    A E+L
Sbjct: 186 TYSSLITGL---GKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELL 242



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 131/273 (47%), Gaps = 1/273 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L  RMKS    P   T++ +      A + + A  +F  M   G +  L ++ +I+ +L 
Sbjct: 346 LFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLG 405

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  +V+ A  LF   RGK    DVI+YN   N      R  +A ++ ++M + GL P++ 
Sbjct: 406 KAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVA 465

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY+ +L G  +  ++++A     E+ ++ C  D + +   +      G +  A  +    
Sbjct: 466 TYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFA 525

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            + G+ P  ++YNA+I  L K   V  A    E++  +G  P+  +Y+ +I  L  TG++
Sbjct: 526 NSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQI 585

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
           + A E +  M     + + ++Y+ L+R   D G
Sbjct: 586 DTAFELLEEMSKRGLKLSPRSYSNLVRKLQDWG 618



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 65/179 (36%), Positives = 97/179 (54%), Gaps = 3/179 (1%)

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           P+V TYN+++  L K    E A L+FEE+    + P+  +Y+ +I  L   G+ E ALE 
Sbjct: 7   PNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEV 66

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
           V  M+   C+PN+ TYN L+     AG+ +  L L  +M    C+P++ TYN LIS++  
Sbjct: 67  VAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTL-- 124

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             K+  L  A  L  EM +RG +P  FT+N ++ GL  +G    A E+L    R G  P
Sbjct: 125 -GKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPP 182



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 4/126 (3%)

Query: 341 KGY-MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
           KG+  PN  TYN ++  L   G+ E A      +K  +  P+V +Y+ LI     AG+ E
Sbjct: 2   KGFPSPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWE 61

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
             LE+  +M +  C PNL TYN L+  +    + D+ L   +LL EM D G +P   T+N
Sbjct: 62  AALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEAL---RLLAEMRDNGCVPDVRTYN 118

Query: 460 RVLNGL 465
            +++ L
Sbjct: 119 CLISTL 124


>gi|297739257|emb|CBI28908.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 120/440 (27%), Positives = 191/440 (43%), Gaps = 39/440 (8%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           A  FF        Y H    +   ID+ +   D+  V  +    K      T      + 
Sbjct: 138 AFRFFWWAGKQKNYIHKIECYVSLIDVLSLSSDFDRVRCIFGEFKEKGFLMTVFAANSLI 197

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFK 204
             + + G  +  + ++  M E G   SL +FN +L+ L     +E A  +F+V   GK  
Sbjct: 198 RSFGALGMVEELLWVWRRMKESGIEPSLYTFNFLLNGLVNSMFIESAERVFEVMECGKIG 257

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
            DV+SYN +  G+C    T KA+E   +M  R L P+  TY  +++  +  G  +     
Sbjct: 258 PDVVSYNTMIKGYCKAGNTKKAMEKFTDMEKRNLEPDKITYLTLIQACYSEGNFDSCLHL 317

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
           + EM++R  EI    Y+ ++ G    G      +VF+ M   G   +VA Y A+I    K
Sbjct: 318 YQEMEERGLEIPPHAYSLVIGGLCKDGRTVEGSSVFENMNKKGCKANVAIYTALIDAYGK 377

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE------- 377
             +V  AI +FE M G+G+ P+  TY V++ GLC +G ++ A+E+    KD+E       
Sbjct: 378 NGNVNEAINLFERMKGEGFEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMF 437

Query: 378 ----------------------------CEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
                                       C  +   YN LI     +G++E  L LF++M 
Sbjct: 438 YSSLIDGLGKAGRVDEAEKFFEEMVERGCPQDSYCYNALIDALAKSGKMEEALVLFKRME 497

Query: 410 SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
              C   + TY ILIS +F   ++++ L   KL   M+D+G  P   +F  +  GL L G
Sbjct: 498 KEGCDQTVYTYTILISGLFKEHRNEEAL---KLWDLMIDKGITPTTASFRALSVGLCLSG 554

Query: 470 NQGLAKEILRLQSRCGRLPR 489
               A +IL   +  G +P 
Sbjct: 555 KVARACKILDELAPMGVIPE 574



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 147/337 (43%), Gaps = 45/337 (13%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177
           ++ +   L   M+   L      ++++       G+      +F +M++ GC+ ++  + 
Sbjct: 310 NFDSCLHLYQEMEERGLEIPPHAYSLVIGGLCKDGRTVEGSSVFENMNKKGCKANVAIYT 369

Query: 178 TILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALE-------- 228
            ++D   K   V +A NLF+  +G+ F+ D ++Y VI NG C   R ++A+E        
Sbjct: 370 ALIDAYGKNGNVNEAINLFERMKGEGFEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDN 429

Query: 229 ---------------------------VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
                                        +EMV+RG   +   YN ++    ++G++EEA
Sbjct: 430 EVAVNAMFYSSLIDGLGKAGRVDEAEKFFEEMVERGCPQDSYCYNALIDALAKSGKMEEA 489

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
              F  M+K  C+  V TYT ++ G       + A  ++D M++ G+ P+ A++ A+   
Sbjct: 490 LVLFKRMEKEGCDQTVYTYTILISGLFKEHRNEEALKLWDLMIDKGITPTTASFRALSVG 549

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           LC    V  A  + +E+   G +P  T +  +I  LC  G  E+A +    + D   E  
Sbjct: 550 LCLSGKVARACKILDELAPMGVIP-ETAFEDMINVLCKAGRTEQACKLADGIVDRGREVP 608

Query: 382 VQTYNILIRYFCDAGEIERGLEL--------FEKMGS 410
            +   ILI     AG  +  ++L        +++MGS
Sbjct: 609 GRVRTILINALRKAGNADLAMKLMHSKIGIGYDRMGS 645


>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 112/409 (27%), Positives = 199/409 (48%), Gaps = 11/409 (2%)

Query: 64  SLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVW 123
           S +  P +  ++IKR ++  L  L FF     H +  H+ +++D  +    ++    +  
Sbjct: 71  SRNLNPSIAFEVIKR-FSDPLLGLKFFEFSRTHLSINHTFNTYDLLMRNLCKVGLNDSAK 129

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            +   M+S  + P      ++   Y   GK D A      +H +G + S   +N +L++L
Sbjct: 130 IVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNML 189

Query: 184 CKEKKVEKAYNLFKV-FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
            K+  V++A  LF+      F  DV S+N++  G C +   +KA E  + M + G  P++
Sbjct: 190 VKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDI 249

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLE-MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
            +YN ++ G+ R  +I +      E M  +    DV+TYT+I+ G+  +G++K A  +FD
Sbjct: 250 VSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFD 309

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            MV+ G+ P+  T+N +I    K  ++ +A++++E+M+  G +P+  T+  +I G C  G
Sbjct: 310 EMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREG 369

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
           E+ + L+    MK     PNV TY +LI   C    I         + S   +P    YN
Sbjct: 370 EVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYN 429

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
            +I       K D+   A  ++ EM ++   P K TF      +L+IGN
Sbjct: 430 PVIDGFCKAGKVDE---ANFIVAEMQEKKCRPDKITFT-----ILIIGN 470



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 151/295 (51%), Gaps = 4/295 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   +F I+       G+ D+A + F +M   GC   + S+NT+++  C+  ++ K ++L
Sbjct: 212 PDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDL 271

Query: 196 FK---VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
            K   + +G    DVI+Y  I +G+C +     A E+  EMV  G+ PN  T+N+++ G+
Sbjct: 272 LKEDMLIKG-VSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGF 330

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
            + G +  A   + +M    C  DVVT+T+++ G+   GE+ +   +++ M    + P+V
Sbjct: 331 GKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNV 390

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            TY  +I  LCK++ +  A      +     +P    YN VI G C  G+++ A   V  
Sbjct: 391 YTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAE 450

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           M++ +C P+  T+ ILI   C  G +   +  F KM    C+P+  T N LIS +
Sbjct: 451 MQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISCL 505



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 128/253 (50%), Gaps = 4/253 (1%)

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
            +N    TY+++++   + G  + A   F  M+      D      +V  +  +G++  A
Sbjct: 104 SINHTFNTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSA 163

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
           +N  + +   G+  S   YN ++ +L K++ V+ A+L+F E +   ++P+  ++N++IRG
Sbjct: 164 KNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRG 223

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF-EKMGSGVCLP 415
           LC  GE+++A EF   M +  C P++ +YN LI  FC   EI +G +L  E M      P
Sbjct: 224 LCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSP 283

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
           ++ TY  +IS      K  D+  A +L  EMV  G  P  FTFN +++G   +GN   A 
Sbjct: 284 DVITYTSIISGYC---KLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAM 340

Query: 476 EILRLQSRCGRLP 488
            +       G LP
Sbjct: 341 VMYEKMLLLGCLP 353



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 34/193 (17%), Positives = 77/193 (39%), Gaps = 36/193 (18%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  ID   ++ + R+   +  +M  L   P   TF  + + Y   G+ ++ +K++  M
Sbjct: 322 TFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEM 381

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG----------------------- 201
                  ++ ++  +++ LCKE ++ +A N  +  +                        
Sbjct: 382 KVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKV 441

Query: 202 -------------KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
                        K + D I++ ++  G C+  R  +A+    +M++    P+  T N +
Sbjct: 442 DEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSL 501

Query: 249 LKGYFRAGQIEEA 261
           +    +AG   EA
Sbjct: 502 ISCLLKAGMPNEA 514


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 179/372 (48%), Gaps = 4/372 (1%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           R    RT   ++  M S ++ P + TF  + + ++  G  + A+++   M E GC  +  
Sbjct: 207 RAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRV 266

Query: 175 SFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           + N +++  CK  +VE A     K     F+ D ++YN   +  C     + AL+V+  M
Sbjct: 267 TVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLM 326

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           +  G +P++ TYN V+    + G+++EA     +M  R C  D  T+ T++        +
Sbjct: 327 LQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRL 386

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           + A ++   +   G+ P V T+N +I  LCK       I +FEEM   G  P+  TYN++
Sbjct: 387 EEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNIL 446

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           I  LC  G++  AL+ +  M+ + C  +  TYN +I   C    IE   E+F++M +   
Sbjct: 447 IDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGI 506

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGL 473
             +  T+N LI  +   K+ DD   A +L+ +MV  G  P   T+N +L      G+   
Sbjct: 507 SRSAVTFNTLIDGLCKAKRIDD---ATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKK 563

Query: 474 AKEILRLQSRCG 485
           A +IL   +  G
Sbjct: 564 AADILETMTANG 575



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/352 (28%), Positives = 160/352 (45%), Gaps = 34/352 (9%)

Query: 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISY 210
           G+ D A  I   M + GC     +FNT++  LC + ++E+A +L +    K    DV ++
Sbjct: 349 GELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTF 408

Query: 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
           N++ N  C V   +  + + +EM   G  P+  TYNI++      G++  A     EM+ 
Sbjct: 409 NILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMES 468

Query: 271 RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
             C    VTY TI+        I+ A  VFD M   G+  S  T+N +I  LCK   +++
Sbjct: 469 NGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDD 528

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           A  + E+MV +G  P++ TYN ++   C  G++++A + +  M  +  E +V TY  LI 
Sbjct: 529 ATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLIN 588

Query: 391 YFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV------------ 438
             C AG  +  L+L   M      P    YN +I S+F R    D L             
Sbjct: 589 GLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGEPP 648

Query: 439 ---------------------AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
                                A   L+EMV++GFMP   +F  +  GLL +G
Sbjct: 649 DALTYKIVFRGLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNLG 700



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 153/294 (52%), Gaps = 2/294 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  I+   ++ D      L   MKS    P + T+ I+ +   S GK   A+ +   M
Sbjct: 407 TFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEM 466

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
             +GC +S  ++NTI+D LCK+ ++E+A  +F            +++N + +G C  KR 
Sbjct: 467 ESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRI 526

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A E++++MV  GL P+  TYN +L  Y + G +++A      M     EIDVVTY T+
Sbjct: 527 DDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTL 586

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++G    G  + A  +  GM   G+ P+   YN +IQ L +++++ +A+ +F EM   G 
Sbjct: 587 INGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGE 646

Query: 344 MPNSTTYNVVIRGLCH-TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
            P++ TY +V RGLC   G ++ A +F+  M +    P   ++ +L     + G
Sbjct: 647 PPDALTYKIVFRGLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNLG 700



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 151/307 (49%), Gaps = 4/307 (1%)

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWC 218
           ++  M + G +  + + NT++  LC+  +V  A  + +       A D  ++  +  G+ 
Sbjct: 182 VYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFI 241

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
                  AL V  +M++ G +P   T N+++ GY + G++E+A  +  +      E D V
Sbjct: 242 EEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQV 301

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TY T VH     G +  A  V D M+  G  P V TYN +I  L K   ++ A  +  +M
Sbjct: 302 TYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQM 361

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
           V +G +P++TT+N +I  LC    +E AL+    +      P+V T+NILI   C  G+ 
Sbjct: 362 VDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDP 421

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
             G+ LFE+M S  C P+  TYNILI  +    K   L+ A  LL EM   G      T+
Sbjct: 422 HLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGK---LVNALDLLKEMESNGCPRSTVTY 478

Query: 459 NRVLNGL 465
           N +++ L
Sbjct: 479 NTIIDAL 485



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 161/360 (44%), Gaps = 5/360 (1%)

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
              P++  +  I ++  +AG  D    +   M   G         + ++   + ++ + A
Sbjct: 84  DFAPSRAVYEEIIQKLGTAGAFDLMEGLVREMRREGHEAGAGVVRSFVESYARLRRFDDA 143

Query: 193 YNLFKVFRGKF--KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250
            +L +     F  +AD   YN + N      R      V  EM DRG+ P++ T N ++K
Sbjct: 144 VDLVRNQLNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIK 203

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
              RA Q+  A     EM       D  T+TT++ GF   G I+ A  V   M+  G  P
Sbjct: 204 ALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSP 263

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           +  T N +I   CK   VE+A+   ++ +  G+ P+  TYN  +  LC  G +  AL+ +
Sbjct: 264 TRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVM 323

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
             M  +  +P+V TYN +I      GE++    +  +M    CLP+  T+N LI ++  +
Sbjct: 324 DLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQ 383

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
            + ++ L    L  E+  +G  P  +TFN ++N L  +G+  L   +       G  P +
Sbjct: 384 NRLEEAL---DLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDE 440



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 117/268 (43%), Gaps = 5/268 (1%)

Query: 226 ALEVLKEMVDR-GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           AL++L   + R    P+   Y  +++    AG  +       EM++   E       + V
Sbjct: 72  ALQMLNSALAREDFAPSRAVYEEIIQKLGTAGAFDLMEGLVREMRREGHEAGAGVVRSFV 131

Query: 285 HGFGVVGEIKRARNVFDGMVNG-GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
             +  +     A ++    +N  GV    A YN ++ VL +   ++    V+ EM  +G 
Sbjct: 132 ESYARLRRFDDAVDLVRNQLNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGI 191

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+  T N +I+ LC   ++  A+  +  M      P+  T+  L++ F + G IE  L 
Sbjct: 192 QPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALR 251

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           +  KM    C P   T N+LI+      + +D L  G +  E+ D GF P + T+N  ++
Sbjct: 252 VKTKMMETGCSPTRVTVNVLINGYCKMGRVEDAL--GYIQKEIAD-GFEPDQVTYNTFVH 308

Query: 464 GLLLIGNQGLAKEILRLQSRCGRLPRQF 491
            L   G+   A +++ L  + G  P  F
Sbjct: 309 CLCQNGHVSHALKVMDLMLQEGHDPDVF 336


>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
           chloroplastic-like [Glycine max]
          Length = 556

 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 103/333 (30%), Positives = 180/333 (54%), Gaps = 7/333 (2%)

Query: 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISY 210
           G+   A+++  ++ E   +  +  +N I+D LCK K V +A NL+     K    +V++Y
Sbjct: 188 GETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVTY 247

Query: 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
             +  G+C++    +A+ +L EM  + +NP++ T++I++    + G+++ A      M K
Sbjct: 248 TTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILIDALGKEGKMKAAKIVLAVMMK 307

Query: 271 RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
              + DVVTY ++V G+ +V E+K A+ VF+ M   GV P V +Y  MI  LCK   V+ 
Sbjct: 308 AYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDE 367

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           AI +FEEM  K  +PN+ T+N +I GLC +G +    + V +M+D     +V TY+ LI 
Sbjct: 368 AISLFEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLID 427

Query: 391 YFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450
             C    +++ + LF+KM +    P++ TY ILI  +    K   L +A ++   ++ +G
Sbjct: 428 ALCKNCHLDQAIALFKKMITQEIQPDMYTYTILIDGLC---KGGRLKIAQEVFQHLLIKG 484

Query: 451 FMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           +     T+  +++G       GL  E L L S+
Sbjct: 485 YHLDIRTYTVMISGFC---KAGLFDEALALLSK 514



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 164/329 (49%), Gaps = 4/329 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L   M +  + P   T+  +   +   G    AV +   M        + +F+ ++D L 
Sbjct: 231 LYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILIDALG 290

Query: 185 KEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           KE K++ A  +  V  +   K DV++YN + +G+ LV     A  V   M   G+ P + 
Sbjct: 291 KEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQ 350

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           +Y I++ G  +   ++EA   F EMK +    + +T+ +++ G    G I    ++ D M
Sbjct: 351 SYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKM 410

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            +   L  V TY+++I  LCK   ++ AI +F++M+ +   P+  TY ++I GLC  G +
Sbjct: 411 RDRSQLADVITYSSLIDALCKNCHLDQAIALFKKMITQEIQPDMYTYTILIDGLCKGGRL 470

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A E    +       +++TY ++I  FC AG  +  L L  KM    C+PN  T++I+
Sbjct: 471 KIAQEVFQHLLIKGYHLDIRTYTVMISGFCKAGLFDEALALLSKMEDNGCIPNAITFDII 530

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
           I ++F + ++D    A KLL EM+ RG +
Sbjct: 531 ICALFEKDENDK---AEKLLREMIARGLL 556



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/410 (23%), Positives = 186/410 (45%), Gaps = 39/410 (9%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           F++ +    +++ + T  +L   +    +     T  I+   +   G+   +  +  ++ 
Sbjct: 72  FNNILSSLVKMQRFPTAISLSKHLDFKGITSDLVTLNILINCFCHLGQITLSFSVLATIL 131

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTN 224
           + G    + +  T++  LC   +V+KA      V   +F+ D ISY  + NG C +  T 
Sbjct: 132 KRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVALEFQLDRISYGTLINGLCKIGETK 191

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
            A+++++ + +R + P++  YNI++    +   + EA   + EM  ++   +VVTYTT++
Sbjct: 192 AAIQLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLI 251

Query: 285 HGFGVV-----------------------------------GEIKRARNVFDGMVNGGVL 309
           +GF ++                                   G++K A+ V   M+   V 
Sbjct: 252 YGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVK 311

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           P V TYN+++      + V++A  VF  M   G  P   +Y ++I GLC T  ++ A+  
Sbjct: 312 PDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISL 371

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
              MK     PN  T+N LI   C +G I    +L +KM     L ++ TY+ LI ++  
Sbjct: 372 FEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLIDALC- 430

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
             K+  L  A  L  +M+ +   P  +T+  +++GL   G   +A+E+ +
Sbjct: 431 --KNCHLDQAIALFKKMITQEIQPDMYTYTILIDGLCKGGRLKIAQEVFQ 478



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 136/304 (44%), Gaps = 34/304 (11%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F   ID   +    +    ++  M    + P   T+  + + Y    +   A  +F SM
Sbjct: 281 TFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSM 340

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTN 224
            + G    + S+  ++D LCK K V++A +LF+  + K        NVI N         
Sbjct: 341 AQSGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKHK--------NVIPNT-------- 384

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
                              T+N ++ G  ++G+I   W    +M+ R    DV+TY++++
Sbjct: 385 ------------------ITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLI 426

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
                   + +A  +F  M+   + P + TY  +I  LCK   ++ A  VF+ ++ KGY 
Sbjct: 427 DALCKNCHLDQAIALFKKMITQEIQPDMYTYTILIDGLCKGGRLKIAQEVFQHLLIKGYH 486

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
            +  TY V+I G C  G  + AL  + +M+D+ C PN  T++I+I    +  E ++  +L
Sbjct: 487 LDIRTYTVMISGFCKAGLFDEALALLSKMEDNGCIPNAITFDIIICALFEKDENDKAEKL 546

Query: 405 FEKM 408
             +M
Sbjct: 547 LREM 550



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 118/260 (45%), Gaps = 3/260 (1%)

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           N A+ +   M+     P    +N +L    +  +   A      +  +    D+VT   +
Sbjct: 51  NDAVALFNRMLLMRPPPPTFQFNNILSSLVKMQRFPTAISLSKHLDFKGITSDLVTLNIL 110

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++ F  +G+I  + +V   ++  G  P V T   +I+ LC +  V+ A+   +++V   +
Sbjct: 111 INCFCHLGQITLSFSVLATILKRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVALEF 170

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
             +  +Y  +I GLC  GE + A++ +  +++   +P+V  YNI+I   C    +     
Sbjct: 171 QLDRISYGTLINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEACN 230

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           L+ +M +    PN+ TY  LI    +      L+ A  LL EM  +   P  +TF+ +++
Sbjct: 231 LYSEMNAKQIYPNVVTYTTLIYGFCIMGC---LIEAVALLNEMKLKNINPDVYTFSILID 287

Query: 464 GLLLIGNQGLAKEILRLQSR 483
            L   G    AK +L +  +
Sbjct: 288 ALGKEGKMKAAKIVLAVMMK 307



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 84/169 (49%), Gaps = 3/169 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  ID   +      VW LV +M+  S      T++ + +        D+A+ +F  M
Sbjct: 386 TFNSLIDGLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCKNCHLDQAIALFKKM 445

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKR 222
                +  + ++  ++D LCK  +++ A  +F+  + +G +  D+ +Y V+ +G+C    
Sbjct: 446 ITQEIQPDMYTYTILIDGLCKGGRLKIAQEVFQHLLIKG-YHLDIRTYTVMISGFCKAGL 504

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
            ++AL +L +M D G  PN  T++I++   F   + ++A +   EM  R
Sbjct: 505 FDEALALLSKMEDNGCIPNAITFDIIICALFEKDENDKAEKLLREMIAR 553


>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
          Length = 796

 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 121/437 (27%), Positives = 199/437 (45%), Gaps = 47/437 (10%)

Query: 92  ILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSA 151
           I    PTY    S+F       ARL   +    +V  M +    P  +T+ ++A     A
Sbjct: 274 IAPTQPTYNTLVSAF-------ARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQA 326

Query: 152 GKADRA------------------------------------VKIFLSMHEHGCRQSLNS 175
           GK D A                                    +++   M + G + +L +
Sbjct: 327 GKVDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVT 386

Query: 176 FNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
            N ++  LCKE K+E+A   L K+       DVI+YN + + +C      KA  ++ EMV
Sbjct: 387 HNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMV 446

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
            +GL  +  T N VL    +  + E+A        +R    D V+Y T++  +      +
Sbjct: 447 GKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPE 506

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
            A  ++D M+   ++PS++TYN +I+ LC+ + ++ AI    E V KG +P+ TTYN++I
Sbjct: 507 PALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIII 566

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
              C  G++E A  F  +M ++  +P+V T N L+   C  G++++ L+LFE        
Sbjct: 567 HAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKK 626

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
            ++ TYN LI SM    K  D+  A     +M  +G  P  FT+N VL+ L   G    A
Sbjct: 627 VDVITYNTLIQSMC---KVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEA 683

Query: 475 KEILRLQSRCGRLPRQF 491
             +L   +  G+L + F
Sbjct: 684 HNMLHKLADSGKLSQSF 700



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 171/347 (49%), Gaps = 5/347 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+ RMK   + PTQ T+  +   +   G   +A K+  SM  +G    L ++N +   LC
Sbjct: 265 LLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLC 324

Query: 185 KEKKVEKAYNLFKVFR--GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           +  KV++A+ L       G    DV++YN + +     + ++ AL +L+EM D+G+ P L
Sbjct: 325 QAGKVDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTL 384

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            T+NIV+K   + G++EEA     ++ +     DV+TY T++  +   G + +A  + D 
Sbjct: 385 VTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDE 444

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           MV  G+     T N ++  LCK    E+A  +      +G++P+  +Y  V+        
Sbjct: 445 MVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYN 504

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
            E AL    +M + +  P++ TYN LI+  C    ++  ++   +      +P+  TYNI
Sbjct: 505 PEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNI 564

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
           +I +     K  DL  A +   +MV+  F P   T N ++NGL L G
Sbjct: 565 IIHAYC---KEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHG 608



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 151/328 (46%), Gaps = 9/328 (2%)

Query: 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG----KFKADVISYNVIANGWCLVKRT 223
           G R SL + N +L  L +        +L  VFR     +   +  ++N++ +  C     
Sbjct: 166 GVRPSLQAANAVLSALSRSPSTLPQASL-DVFRSLIELRLHPNHYTFNLLVHTHCSKGTL 224

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
             AL  L  M   GL+P+  TYN +L  + R G + EA      MK+        TY T+
Sbjct: 225 ADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTL 284

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG- 342
           V  F  +G IK+A  V + M   G  P + TYN +   LC+   V+ A  + +EM   G 
Sbjct: 285 VSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGT 344

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
            +P+  TYN ++           AL  +  M+D   +P + T+NI+++  C  G++E  L
Sbjct: 345 ALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEAL 404

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
              EK+      P++ TYN LI +     K+ ++  A  L+ EMV +G     FT N VL
Sbjct: 405 GKLEKIAEEGLAPDVITYNTLIDAYC---KAGNVAKAFTLMDEMVGKGLKMDTFTLNTVL 461

Query: 463 NGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
             L  +     A+E+L    + G +P +
Sbjct: 462 YNLCKMKRYEDAEELLHSPPQRGFVPDE 489



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 160/379 (42%), Gaps = 72/379 (18%)

Query: 126 VHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185
           + ++    L P   T+  + + Y  AG   +A  +   M   G +    + NT+L  LCK
Sbjct: 407 LEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCK 466

Query: 186 EKKVEKAYNLF------------------------------------KVFRGKFKADVIS 209
            K+ E A  L                                     ++   K    + +
Sbjct: 467 MKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSIST 526

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           YN +  G C ++R  +A++ L E V++GL P+ TTYNI++  Y + G +E A+RF  +M 
Sbjct: 527 YNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMV 586

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
           +   + DVVT  T+++G  + G++ +A  +F+  V  G    V TYN +IQ +CK   V+
Sbjct: 587 ENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVD 646

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD------------- 376
            A+  F++M  KG  P++ TYNVV+  L   G  E A   + ++ D              
Sbjct: 647 TALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGKLSQSFACPLLK 706

Query: 377 ------------ECEPN-----------VQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
                       E +P            ++TY   +   C  G+++    + ++M     
Sbjct: 707 PSSADEADVKEHEGKPEAESSEKAQDNALETYMERLNGLCTGGQLKEAKAVLDEMMQKGM 766

Query: 414 LPNLDTYNILISSMFVRKK 432
             +  TY  L+  +  R+K
Sbjct: 767 PVDCSTYITLMEGLIKRQK 785



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 160/336 (47%), Gaps = 5/336 (1%)

Query: 132 LSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEK 191
           L L P   TF ++   + S G    A+    +M   G      ++NT+L+  C++  + +
Sbjct: 202 LRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGE 261

Query: 192 AYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250
           A  L  ++ R        +YN + + +  +    +A +V++ M   G  P+L TYN++  
Sbjct: 262 ARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAM 321

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEI-DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
           G  +AG+++EA+R   EM++    + DVVTY T+V           A  + + M + GV 
Sbjct: 322 GLCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVK 381

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           P++ T+N +++ LCK+  +E A+   E++  +G  P+  TYN +I   C  G + +A   
Sbjct: 382 PTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTL 441

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
           +  M     + +  T N ++   C     E   EL         +P+  +Y  ++++ F 
Sbjct: 442 MDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFK 501

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
               +  L   +L  +M++R  +P   T+N ++ GL
Sbjct: 502 EYNPEPAL---RLWDQMIERKLIPSISTYNTLIKGL 534



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/313 (20%), Positives = 129/313 (41%), Gaps = 37/313 (11%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           +++ Y     L+H        P + ++  +   Y      + A++++  M E     S++
Sbjct: 466 KMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSIS 525

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           ++NT++  LC+ +++++A +    F  K    D  +YN+I + +C       A     +M
Sbjct: 526 TYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKM 585

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           V+    P++ T N ++ G    G++++A + F    ++  ++DV+TY T++     VG++
Sbjct: 586 VENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDV 645

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS------ 347
             A + FD M   G+ P   TYN ++  L +    E A  +  ++   G +  S      
Sbjct: 646 DTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGKLSQSFACPLL 705

Query: 348 ------------------------------TTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
                                          TY   + GLC  G+++ A   +  M    
Sbjct: 706 KPSSADEADVKEHEGKPEAESSEKAQDNALETYMERLNGLCTGGQLKEAKAVLDEMMQKG 765

Query: 378 CEPNVQTYNILIR 390
              +  TY  L+ 
Sbjct: 766 MPVDCSTYITLME 778


>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 112/409 (27%), Positives = 199/409 (48%), Gaps = 11/409 (2%)

Query: 64  SLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVW 123
           S +  P +  ++IKR ++  L  L FF     H +  H+ +++D  +    ++    +  
Sbjct: 71  SRNLNPSIAFEVIKR-FSDPLLGLKFFEFSRTHLSINHTFNTYDLLMRNLCKVGLNDSAK 129

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            +   M+S  + P      ++   Y   GK D A      +H +G + S   +N +L++L
Sbjct: 130 IVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNML 189

Query: 184 CKEKKVEKAYNLFKV-FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
            K+  V++A  LF+      F  DV S+N++  G C +   +KA E  + M + G  P++
Sbjct: 190 VKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDI 249

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLE-MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
            +YN ++ G+ R  +I +      E M  +    DV+TYT+I+ G+  +G++K A  +FD
Sbjct: 250 VSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFD 309

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            MV+ G+ P+  T+N +I    K  ++ +A++++E+M+  G +P+  T+  +I G C  G
Sbjct: 310 EMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREG 369

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
           E+ + L+    MK     PNV TY +LI   C    I         + S   +P    YN
Sbjct: 370 EVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYN 429

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
            +I       K D+   A  ++ EM ++   P K TF      +L+IGN
Sbjct: 430 PVIDGFCKAGKVDE---ANFIVAEMQEKKCRPDKITFT-----ILIIGN 470



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 151/295 (51%), Gaps = 4/295 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   +F I+       G+ D+A + F +M   GC   + S+NT+++  C+  ++ K ++L
Sbjct: 212 PDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDL 271

Query: 196 FK---VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
            K   + +G    DVI+Y  I +G+C +     A E+  EMV  G+ PN  T+N+++ G+
Sbjct: 272 LKEDMLIKG-VSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGF 330

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
            + G +  A   + +M    C  DVVT+T+++ G+   GE+ +   +++ M    + P+V
Sbjct: 331 GKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNV 390

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            TY  +I  LCK++ +  A      +     +P    YN VI G C  G+++ A   V  
Sbjct: 391 YTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAE 450

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           M++ +C P+  T+ ILI   C  G +   +  F KM    C+P+  T N LIS +
Sbjct: 451 MQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISCL 505



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 128/253 (50%), Gaps = 4/253 (1%)

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
            +N    TY+++++   + G  + A   F  M+      D      +V  +  +G++  A
Sbjct: 104 SINHTFNTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSA 163

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
           +N  + +   G+  S   YN ++ +L K++ V+ A+L+F E +   ++P+  ++N++IRG
Sbjct: 164 KNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRG 223

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF-EKMGSGVCLP 415
           LC  GE+++A EF   M +  C P++ +YN LI  FC   EI +G +L  E M      P
Sbjct: 224 LCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSP 283

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
           ++ TY  +IS      K  D+  A +L  EMV  G  P  FTFN +++G   +GN   A 
Sbjct: 284 DVITYTSIISGYC---KLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAM 340

Query: 476 EILRLQSRCGRLP 488
            +       G LP
Sbjct: 341 VMYEKMLLLGCLP 353



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 34/193 (17%), Positives = 77/193 (39%), Gaps = 36/193 (18%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  ID   ++ + R+   +  +M  L   P   TF  + + Y   G+ ++ +K++  M
Sbjct: 322 TFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEM 381

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG----------------------- 201
                  ++ ++  +++ LCKE ++ +A N  +  +                        
Sbjct: 382 KVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKV 441

Query: 202 -------------KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
                        K + D I++ ++  G C+  R  +A+    +M++    P+  T N +
Sbjct: 442 DEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSL 501

Query: 249 LKGYFRAGQIEEA 261
           +    +AG   EA
Sbjct: 502 ISCLLKAGMPNEA 514


>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 190/382 (49%), Gaps = 6/382 (1%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           S   F+  +   A+++ + T+ +L H+M S  + P   T  I+   +    +   A  + 
Sbjct: 60  STVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFSVL 119

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLV 220
             + + G +    +F T++  +  E K+ +A +LF    G+ F+ DV++Y  + NG C V
Sbjct: 120 AKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKV 179

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
             T+ A+ +L  MV +   PN+  YN ++    +  Q+ EA+  F EM  +    D+ TY
Sbjct: 180 GNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTY 239

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
            +++H    + E K    + + MV+  ++P V ++N ++  LCK+  V  A  V ++M+ 
Sbjct: 240 NSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQ 299

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           +G  PN  TY  ++ G C   EM+ A++    M    C PNV +YN LI  +C    I++
Sbjct: 300 RGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDK 359

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
            + LF +M     +P+  TY+ LI  +   ++  D   A  L  EMV    +P   T+  
Sbjct: 360 AMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQD---AIALFHEMVACSQIPNLVTYRI 416

Query: 461 VLNGLLLIGNQGLAKEILRLQS 482
           +L+   L  N+ LA+ +  L++
Sbjct: 417 LLD--YLCKNRYLAEAMALLKA 436



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 189/398 (47%), Gaps = 41/398 (10%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L  +M      P   T+  +       G    A+++  SM +  C+ ++ ++NTI+D LC
Sbjct: 153 LFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLC 212

Query: 185 KEKKVEKAYNLF------------------------------------KVFRGKFKADVI 208
           K+++V +A+NLF                                    ++   K   DV+
Sbjct: 213 KDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVV 272

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           S+N + +  C   +  +A +V+ +M+ RG+ PN+ TY  ++ G+    +++EA + F  M
Sbjct: 273 SFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTM 332

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
             + C  +V++Y T+++G+  +  I +A  +F  M    ++P   TY+ +I  LC  + +
Sbjct: 333 VCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERL 392

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           ++AI +F EMV    +PN  TY +++  LC    +  A+  +  ++    +P++Q  NI 
Sbjct: 393 QDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIA 452

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           I   C AGE+E   +LF  + S    P++ TY+I+I+ +  R   D+   A KL  EM +
Sbjct: 453 IDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDE---ASKLFREMDE 509

Query: 449 RGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGR 486
            G       +N +  G L   N   ++ I  LQ    R
Sbjct: 510 NGCTLNGCIYNTITRGFL--RNNETSRAIQLLQEMVAR 545



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/376 (27%), Positives = 188/376 (50%), Gaps = 4/376 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   + R     + L   M +  + P   T+  +     +  +      +   M
Sbjct: 203 AYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEM 262

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
            +      + SFNT++D LCKE KV +A+++  K+ +   + +V++Y  + +G CL+   
Sbjct: 263 VDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEM 322

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           ++A++V   MV +G  PN+ +YN ++ GY +  +I++A   F EM +++   D VTY+T+
Sbjct: 323 DEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTL 382

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +HG   V  ++ A  +F  MV    +P++ TY  ++  LCK   +  A+ + + + G   
Sbjct: 383 IHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNL 442

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+    N+ I G+C  GE+E A +    +     +P+V TY+I+I   C  G ++   +
Sbjct: 443 DPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASK 502

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           LF +M    C  N   YN  I+  F+R  +++   A +LL EMV RGF     T    + 
Sbjct: 503 LFREMDENGCTLNGCIYNT-ITRGFLR--NNETSRAIQLLQEMVARGFSADASTMTLFVK 559

Query: 464 GLLLIGNQGLAKEILR 479
            L   G     K+ILR
Sbjct: 560 MLSDDGLDQSLKQILR 575



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 3/173 (1%)

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           I  A + F+ M+     PS   +N ++  + K       + +  +M   G  PN  T ++
Sbjct: 42  IDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHI 101

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           +I   CH   +  A   + ++     +P+  T+  LIR     G+I   L LF+KM    
Sbjct: 102 LINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEG 161

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
             P++ TY  LI+ +    K  +   A +LL  MV +   P  F +N +++ L
Sbjct: 162 FRPDVVTYGTLINGLC---KVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSL 211



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 5/161 (3%)

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
           ++++ AI  F  M+     P++  +N ++  +         L    +M      PN+ T 
Sbjct: 40  NTIDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTL 99

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           +ILI  FC    +     +  K+      P+  T+  LI  ++V  K  + L    L  +
Sbjct: 100 HILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEAL---HLFDK 156

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL--RLQSRC 484
           M+  GF P   T+  ++NGL  +GN   A  +L   +Q  C
Sbjct: 157 MIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNC 197


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 108/381 (28%), Positives = 179/381 (46%), Gaps = 39/381 (10%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
           V  L  +M      P   T+  +       G    A+++  SM +  C+  +  + +I+D
Sbjct: 148 VLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIID 207

Query: 182 LLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
            LCK+++V +A+NLF ++        + +YN + +  C +        +L EMV+  + P
Sbjct: 208 SLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMP 267

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           N+  ++ V+    + G++ EA      M KR  E +VVTY  ++ G  +  E+  A  VF
Sbjct: 268 NVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVF 327

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           D MV  G  P V +Y+ +I   CK   +E A+ +FEEM  K  +PN+ TY+ ++ GLCH 
Sbjct: 328 DTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHV 387

Query: 361 GEMERALEFV------GRMKD-----------------DEC------------EPNVQTY 385
           G ++ A+         G++ D                 DE             +P++Q Y
Sbjct: 388 GRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIY 447

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
            I+I   C AGE+E   +LF  + S    PN+ TY I+I+ +    +   L  A KL  E
Sbjct: 448 TIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLC---QQGLLAEASKLFGE 504

Query: 446 MVDRGFMPRKFTFNRVLNGLL 466
           M  +G+ P   T+N +  G L
Sbjct: 505 MKRKGYSPNGCTYNLITRGFL 525



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/388 (27%), Positives = 191/388 (49%), Gaps = 7/388 (1%)

Query: 80  WNHALKALHFFN-ILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQ 138
           +N    AL  FN +L  HP    S + F   +    +++ Y TV +L H+M S  + P  
Sbjct: 37  FNTLDDALSSFNRMLHMHP--PPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNI 94

Query: 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV 198
            T  I+   +    +   A  +   + + G + ++ +FNT++  LC E K+ +  +LF  
Sbjct: 95  YTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDK 154

Query: 199 FRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
             G+ F+ +V++Y  + NG C V  T+ A+ +L+ M      P++  Y  ++    +  Q
Sbjct: 155 MIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQ 214

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           + +A+  F EM  +     + TY +++H    + E K    + + MVN  ++P+V  ++ 
Sbjct: 215 VTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFST 274

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           ++  LCK+  V  A  V + M+ +G  PN  TYN ++ G C   EM+ A++    M    
Sbjct: 275 VVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKG 334

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
             P+V +Y+ LI  +C    IE+ + LFE+M     +PN  TY+ L+  +    +  D  
Sbjct: 335 FAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQD-- 392

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            A  L  EMV RG +P   ++  +L+ L
Sbjct: 393 -AIALFHEMVTRGQIPDFVSYCILLDYL 419



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 93/278 (33%), Positives = 157/278 (56%), Gaps = 6/278 (2%)

Query: 176 FNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           F+T++D LCKE KV +A+++  +   RG  + +V++YN + +G CL    ++A++V   M
Sbjct: 272 FSTVVDALCKEGKVMEAHDVVDMMIKRG-VEPNVVTYNALMDGHCLRSEMDEAVKVFDTM 330

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           V +G  P++ +Y+ ++ GY +  +IE+A   F EM +++   + VTY+T++HG   VG +
Sbjct: 331 VCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRL 390

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           + A  +F  MV  G +P   +Y  ++  LCK   ++ AI + + + G    P+   Y +V
Sbjct: 391 QDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIV 450

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           I G+C  GE+E A +    +      PNV TY I+I   C  G +    +LF +M     
Sbjct: 451 IDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGY 510

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
            PN  TYN LI+  F+R  +++ L   +LL EM+ RGF
Sbjct: 511 SPNGCTYN-LITRGFLR--NNETLRGIQLLQEMLARGF 545



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 166/349 (47%), Gaps = 8/349 (2%)

Query: 90  FNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
           FN+ S       SPS  +++  I     L +++ V  L++ M +  + P    F+ + + 
Sbjct: 219 FNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDA 278

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKAD 206
               GK   A  +   M + G   ++ ++N ++D  C   ++++A  +F     K F  D
Sbjct: 279 LCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPD 338

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           V+SY+ + NG+C ++R  KA+ + +EM  + L PN  TY+ ++ G    G++++A   F 
Sbjct: 339 VVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFH 398

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           EM  R    D V+Y  ++        +  A  +   +    + P +  Y  +I  +C+  
Sbjct: 399 EMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAG 458

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            +E A  +F  +  KG  PN  TY ++I GLC  G +  A +  G MK     PN  TYN
Sbjct: 459 ELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYN 518

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
           ++ R F    E  RG++L ++M     L    + ++  S++ V   SDD
Sbjct: 519 LITRGFLRNNETLRGIQLLQEM-----LARGFSADVSTSTVLVEMLSDD 562



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 3/154 (1%)

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
           +++++A+  F  M+     P+   +  ++  +         L    +M      PN+ T 
Sbjct: 38  NTLDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTL 97

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           NILI  FC    +     +  K+      PN+ T+N LI  + V  K  ++L    L  +
Sbjct: 98  NILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVL---HLFDK 154

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           M+  GF P   T+  ++NGL  +G+   A  +LR
Sbjct: 155 MIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLR 188


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 108/381 (28%), Positives = 179/381 (46%), Gaps = 39/381 (10%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
           V  L  +M      P   T+  +       G    A+++  SM +  C+  +  + +I+D
Sbjct: 157 VLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIID 216

Query: 182 LLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
            LCK+++V +A+NLF ++        + +YN + +  C +        +L EMV+  + P
Sbjct: 217 SLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMP 276

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           N+  ++ V+    + G++ EA      M KR  E +VVTY  ++ G  +  E+  A  VF
Sbjct: 277 NVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVF 336

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           D MV  G  P V +Y+ +I   CK   +E A+ +FEEM  K  +PN+ TY+ ++ GLCH 
Sbjct: 337 DTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHV 396

Query: 361 GEMERALEFV------GRMKD-----------------DEC------------EPNVQTY 385
           G ++ A+         G++ D                 DE             +P++Q Y
Sbjct: 397 GRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIY 456

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
            I+I   C AGE+E   +LF  + S    PN+ TY I+I+ +    +   L  A KL  E
Sbjct: 457 TIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLC---QQGLLAEASKLFGE 513

Query: 446 MVDRGFMPRKFTFNRVLNGLL 466
           M  +G+ P   T+N +  G L
Sbjct: 514 MKRKGYSPNGCTYNLITRGFL 534



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 107/388 (27%), Positives = 191/388 (49%), Gaps = 7/388 (1%)

Query: 80  WNHALKALHFFN-ILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQ 138
           +N    AL  FN +L  HP    S + F   +    +++ Y TV +L H+M S  + P  
Sbjct: 46  FNTLDDALSSFNRMLHMHP--PPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNI 103

Query: 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV 198
            T  I+   +    +   A  +   + + G + ++ +FNT++  LC E K+ +  +LF  
Sbjct: 104 YTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDK 163

Query: 199 FRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
             G+ F+ +V++Y  + NG C V  T+ A+ +L+ M      P++  Y  ++    +  Q
Sbjct: 164 MIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQ 223

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           + +A+  F EM  +     + TY +++H    + E K    + + MVN  ++P+V  ++ 
Sbjct: 224 VTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFST 283

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           ++  LCK+  V  A  V + M+ +G  PN  TYN ++ G C   EM+ A++    M    
Sbjct: 284 VVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKG 343

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
             P+V +Y+ LI  +C    IE+ + LFE+M     +PN  TY+ L+  +    +  D  
Sbjct: 344 FAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQD-- 401

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            A  L  EMV RG +P   ++  +L+ L
Sbjct: 402 -AIALFHEMVTRGQIPDFVSYCILLDYL 428



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 93/278 (33%), Positives = 157/278 (56%), Gaps = 6/278 (2%)

Query: 176 FNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           F+T++D LCKE KV +A+++  +   RG  + +V++YN + +G CL    ++A++V   M
Sbjct: 281 FSTVVDALCKEGKVMEAHDVVDMMIKRG-VEPNVVTYNALMDGHCLRSEMDEAVKVFDTM 339

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           V +G  P++ +Y+ ++ GY +  +IE+A   F EM +++   + VTY+T++HG   VG +
Sbjct: 340 VCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRL 399

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           + A  +F  MV  G +P   +Y  ++  LCK   ++ AI + + + G    P+   Y +V
Sbjct: 400 QDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIV 459

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           I G+C  GE+E A +    +      PNV TY I+I   C  G +    +LF +M     
Sbjct: 460 IDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGY 519

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
            PN  TYN LI+  F+R  +++ L   +LL EM+ RGF
Sbjct: 520 SPNGCTYN-LITRGFLR--NNETLRGIQLLQEMLARGF 554



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 166/349 (47%), Gaps = 8/349 (2%)

Query: 90  FNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
           FN+ S       SPS  +++  I     L +++ V  L++ M +  + P    F+ + + 
Sbjct: 228 FNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDA 287

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKAD 206
               GK   A  +   M + G   ++ ++N ++D  C   ++++A  +F     K F  D
Sbjct: 288 LCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPD 347

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           V+SY+ + NG+C ++R  KA+ + +EM  + L PN  TY+ ++ G    G++++A   F 
Sbjct: 348 VVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFH 407

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           EM  R    D V+Y  ++        +  A  +   +    + P +  Y  +I  +C+  
Sbjct: 408 EMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAG 467

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            +E A  +F  +  KG  PN  TY ++I GLC  G +  A +  G MK     PN  TYN
Sbjct: 468 ELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYN 527

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
           ++ R F    E  RG++L ++M     L    + ++  S++ V   SDD
Sbjct: 528 LITRGFLRNNETLRGIQLLQEM-----LARGFSADVSTSTVLVEMLSDD 571



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 3/154 (1%)

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
           +++++A+  F  M+     P+   +  ++  +         L    +M      PN+ T 
Sbjct: 47  NTLDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTL 106

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           NILI  FC    +     +  K+      PN+ T+N LI  + V  K  ++L    L  +
Sbjct: 107 NILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVL---HLFDK 163

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           M+  GF P   T+  ++NGL  +G+   A  +LR
Sbjct: 164 MIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLR 197


>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
 gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
          Length = 556

 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 102/330 (30%), Positives = 175/330 (53%), Gaps = 4/330 (1%)

Query: 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISY 210
           G++  A ++   M     + ++  +N I+D  CK++   KA +L+ K+       D+++Y
Sbjct: 203 GRSIDAFQLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTY 262

Query: 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
             +  G+C   +  +  +++ EMV++ +NPN+ T+N+++  + R G++ EA   F  M K
Sbjct: 263 TSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVK 322

Query: 271 RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
           R  + D+VT+ T++ G  + G +  AR +FD +   G+LP V +Y  +I   CK   ++ 
Sbjct: 323 RGQQPDIVTFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDE 382

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           A+ +F EM  K  + +   Y+ +I GLC +G +  A E    + +D   PNV TYNILI 
Sbjct: 383 AVSLFNEMRCKNMVLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILID 442

Query: 391 YFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450
            FC   +I+ G+ELF+ M      P + TYNILI+      KS  +  A  LL  M  + 
Sbjct: 443 AFCKIQDIDMGIELFKLMCGKGLTPTVLTYNILINGYC---KSKRIREAMNLLSVMQSKN 499

Query: 451 FMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
             P   T+N + +GL   G    A E+ ++
Sbjct: 500 LAPDSITYNSLFDGLCKSGRISDAWELFKV 529



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 162/318 (50%), Gaps = 9/318 (2%)

Query: 111 DLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCR 170
           +L  + RD      L  ++  + + P   T+  +   +   G+     ++   M      
Sbjct: 238 ELTCKARD------LYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNIN 291

Query: 171 QSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKRTNKALE 228
            ++ +FN ++D  C++ K+ +A  +F +   RG+ + D++++N + +G CL     +A +
Sbjct: 292 PNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQ-QPDIVTFNTLISGHCLHGNVLEARK 350

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           +   + +RG+ P++ +Y I++ GY +  +I+EA   F EM+ +   +D+V Y++++ G  
Sbjct: 351 LFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLIDGLC 410

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G I  A  +F  + N G  P+V TYN +I   CK   ++  I +F+ M GKG  P   
Sbjct: 411 KSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVL 470

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           TYN++I G C +  +  A+  +  M+     P+  TYN L    C +G I    ELF+ M
Sbjct: 471 TYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYNSLFDGLCKSGRISDAWELFKVM 530

Query: 409 GSGVCLPNLDTYNILISS 426
             G    ++ TYN+L+ +
Sbjct: 531 HVGGPPVDVATYNVLLDA 548



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 137/286 (47%), Gaps = 1/286 (0%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            R   +  V  L+  M + ++ P   TF ++ + +   GK   A  +F  M + G +  +
Sbjct: 270 CRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDI 329

Query: 174 NSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
            +FNT++   C    V +A  LF  VF      DV SY ++  G+C  KR ++A+ +  E
Sbjct: 330 VTFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNE 389

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M  + +  ++  Y+ ++ G  ++G+I  AW  F  +       +V+TY  ++  F  + +
Sbjct: 390 MRCKNMVLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQD 449

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           I     +F  M   G+ P+V TYN +I   CK   +  A+ +   M  K   P+S TYN 
Sbjct: 450 IDMGIELFKLMCGKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYNS 509

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
           +  GLC +G +  A E    M       +V TYN+L+  FC A ++
Sbjct: 510 LFDGLCKSGRISDAWELFKVMHVGGPPVDVATYNVLLDAFCKAQDV 555



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 96/399 (24%), Positives = 177/399 (44%), Gaps = 39/399 (9%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           S   F+  I    +++      +L+ +M    + P+  T +I    Y   G+   A  + 
Sbjct: 83  SVIQFNTIIGSVVKMKHCPVAISLLKQMVFKGVTPSIFTLSIWINCYCHLGEMGFAFSVL 142

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLV 220
             + + G + +  +  T++  LC   +V+KA +    V       D + Y  + NG C +
Sbjct: 143 GIVLKRGYQPNNITLTTVMKGLCINGEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCKI 202

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
            R+  A ++L+EM  + + PN+  YN+++  + +     +A   +L++     + D++TY
Sbjct: 203 GRSIDAFQLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTY 262

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
           T+++ GF   G+    + +   MVN  + P+V T+N +I   C+K  +  A  +F  MV 
Sbjct: 263 TSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVK 322

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           +G  P+  T+N +I G C  G +  A +    + +    P+V +Y ILI  +C    I+ 
Sbjct: 323 RGQQPDIVTFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDE 382

Query: 401 GLELFEKMG---------------SGVCL--------------------PNLDTYNILIS 425
            + LF +M                 G+C                     PN+ TYNILI 
Sbjct: 383 AVSLFNEMRCKNMVLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILID 442

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           +     K  D+ +  +L   M  +G  P   T+N ++NG
Sbjct: 443 AFC---KIQDIDMGIELFKLMCGKGLTPTVLTYNILING 478



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 159/332 (47%), Gaps = 17/332 (5%)

Query: 161 FLSMHEHGCRQS---LNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANG 216
           FL    H  +Q+   L+SFN I D          A  LF  +   +    VI +N I   
Sbjct: 44  FLRFFSHCPKQNAKILSSFNGIDD----------AVTLFNHLINMQPLPSVIQFNTIIGS 93

Query: 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID 276
              +K    A+ +LK+MV +G+ P++ T +I +  Y   G++  A+     + KR  + +
Sbjct: 94  VVKMKHCPVAISLLKQMVFKGVTPSIFTLSIWINCYCHLGEMGFAFSVLGIVLKRGYQPN 153

Query: 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE 336
            +T TT++ G  + GE+++A +  D +   G+L     Y  +I  LCK     +A  + +
Sbjct: 154 NITLTTVMKGLCINGEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLLQ 213

Query: 337 EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
           EM G+   PN   YN++I   C      +A +   ++ D   +P++ TY  LIR FC  G
Sbjct: 214 EMEGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTG 273

Query: 397 EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
           +     +L  +M +    PN+ T+N+LI + F RK    ++ A  +   MV RG  P   
Sbjct: 274 QWGEVKQLMCEMVNKNINPNVYTFNVLIDA-FCRKGK--MIEAQGMFNLMVKRGQQPDIV 330

Query: 457 TFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           TFN +++G  L GN   A+++       G LP
Sbjct: 331 TFNTLISGHCLHGNVLEARKLFDTVFERGILP 362



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 1/115 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   +++D      L   M    L PT  T+ I+   Y  + +   A+ +   M
Sbjct: 436 TYNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVLTYNILINGYCKSKRIREAMNLLSVM 495

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWC 218
                     ++N++ D LCK  ++  A+ LFKV   G    DV +YNV+ + +C
Sbjct: 496 QSKNLAPDSITYNSLFDGLCKSGRISDAWELFKVMHVGGPPVDVATYNVLLDAFC 550


>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 675

 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 110/336 (32%), Positives = 180/336 (53%), Gaps = 6/336 (1%)

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR--GKFKADVISYNV 212
           D A +++  M E G R ++ ++NT+LD  CK+ KV++A  L    +  G    DV +YNV
Sbjct: 172 DVAREVYNVMVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDV-TYNV 230

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           + NG        +A E+++EM+  GL  +  TY+ +++GY   GQ++EA R   EM  R 
Sbjct: 231 LVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRG 290

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
               +VTY TI++G    G +  AR + D MVN  ++P + +YN +I    +  ++  A 
Sbjct: 291 AVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAF 350

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
           L+F E+  +G +P+  TYN +I GLC  G+++ A+     M     +P+V T+ IL+R F
Sbjct: 351 LLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGF 410

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
           C  G +    ELF++M +    P+   Y   I+ +    K  D   A  +  EM+ RGF 
Sbjct: 411 CKLGNLPMAKELFDEMLNRGLQPDRFAY---ITRIVGELKLGDPSKAFGMQEEMLARGFP 467

Query: 453 PRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           P   T+N  ++GL  +GN   A E+++     G +P
Sbjct: 468 PDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVP 503



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 109/342 (31%), Positives = 169/342 (49%), Gaps = 4/342 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M  L L  +  T+  +   Y   G+ D A ++   M   G   +L ++NTI+  LC
Sbjct: 247 LIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLC 306

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  +V  A  L  V   K    D++SYN +  G+  +    +A  +  E+  RGL P++ 
Sbjct: 307 KWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVV 366

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN ++ G  R G ++ A R   EM K   + DV T+T +V GF  +G +  A+ +FD M
Sbjct: 367 TYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEM 426

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           +N G+ P    Y   I    K      A  + EEM+ +G+ P+  TYNV I GL   G +
Sbjct: 427 LNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNL 486

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A E V +M  +   P+  TY  +I     AG + +   +F +M S    P++ TY +L
Sbjct: 487 KEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTYTVL 546

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           I S  VR +   L +A     EM ++G  P   T+N ++NGL
Sbjct: 547 IHSYAVRGR---LKLAILHFFEMHEKGVHPNVITYNALINGL 585



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 188/373 (50%), Gaps = 13/373 (3%)

Query: 107 DHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE 166
           D +ID+A      R V+ +   M    + PT  T+  + + +   GK   A+++ L M +
Sbjct: 168 DSSIDVA------REVYNV---MVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQK 218

Query: 167 HGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNK 225
            GC  +  ++N +++ L    ++E+A  L + + R   +    +Y+ +  G+C   + ++
Sbjct: 219 MGCLPNDVTYNVLVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDE 278

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
           A  + +EM+ RG  P L TYN ++ G  + G++ +A +    M  +    D+V+Y T+++
Sbjct: 279 ASRLGEEMLSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIY 338

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
           G+  +G I  A  +F  +   G++PSV TYN +I  LC+   ++ A+ + +EM+  G  P
Sbjct: 339 GYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDP 398

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           +  T+ +++RG C  G +  A E    M +   +P+   Y   I      G+  +   + 
Sbjct: 399 DVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQ 458

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           E+M +    P+L TYN+ I  +    K  +L  A +L+ +M+  G +P   T+  +++  
Sbjct: 459 EEMLARGFPPDLITYNVFIDGL---HKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAH 515

Query: 466 LLIGNQGLAKEIL 478
           L+ G+   A+ + 
Sbjct: 516 LMAGHLRKARAVF 528



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 158/324 (48%), Gaps = 1/324 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S++  I    RL +    + L   ++   L P+  T+  + +     G  D A+++   M
Sbjct: 332 SYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEM 391

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
            +HG    + +F  ++   CK   +  A  LF ++     + D  +Y     G   +   
Sbjct: 392 IKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDP 451

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           +KA  + +EM+ RG  P+L TYN+ + G  + G ++EA     +M       D VTYT+I
Sbjct: 452 SKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSI 511

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +H   + G +++AR VF  M++ G+ PSV TY  +I     +  ++ AIL F EM  KG 
Sbjct: 512 IHAHLMAGHLRKARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGV 571

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN  TYN +I GLC   +M++A +F   M+     PN  TY ILI   C+ G  +  L 
Sbjct: 572 HPNVITYNALINGLCKVRKMDQAYKFFTEMQAKGISPNKYTYTILINENCNLGHWQEALR 631

Query: 404 LFEKMGSGVCLPNLDTYNILISSM 427
           L++ M      P+  T++ L+  +
Sbjct: 632 LYKDMLDREIQPDSCTHSALLKHL 655



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 101/191 (52%), Gaps = 4/191 (2%)

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDS-VENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
           VF  MV+ G+LP +   N ++++L  +DS ++ A  V+  MV  G  P   TYN ++   
Sbjct: 141 VFYKMVSKGMLPDLKNCNRVLRLLRDRDSSIDVAREVYNVMVECGIRPTVVTYNTMLDSF 200

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
           C  G+++ AL+ + +M+   C PN  TYN+L+     +GE+E+  EL ++M       + 
Sbjct: 201 CKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQAKELIQEMLRLGLEVSA 260

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
            TY+ LI     + + D+   A +L  EM+ RG +P   T+N ++ GL   G    A+++
Sbjct: 261 YTYDPLIRGYCEKGQLDE---ASRLGEEMLSRGAVPTLVTYNTIMYGLCKWGRVSDARKL 317

Query: 478 LRLQSRCGRLP 488
           L +      +P
Sbjct: 318 LDVMVNKNLMP 328



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 106/238 (44%), Gaps = 35/238 (14%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   +L + +    LV +M    L P   T+  I   ++ AG   +A  +FL M
Sbjct: 472 TYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEM 531

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTN 224
              G   S                                  V++Y V+ + + +  R  
Sbjct: 532 LSKGIFPS----------------------------------VVTYTVLIHSYAVRGRLK 557

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
            A+    EM ++G++PN+ TYN ++ G  +  ++++A++FF EM+ +    +  TYT ++
Sbjct: 558 LAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYKFFTEMQAKGISPNKYTYTILI 617

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           +    +G  + A  ++  M++  + P   T++A+++ L  KD   + +   E ++  G
Sbjct: 618 NENCNLGHWQEALRLYKDMLDREIQPDSCTHSALLKHL-NKDYKSHVVRHLENVIAAG 674


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 101/348 (29%), Positives = 177/348 (50%), Gaps = 74/348 (21%)

Query: 176 FNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           +NTI+D +CK K V +A++L+     K    DV++Y+ + +G+C++ + N A+ +  +M+
Sbjct: 199 YNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMI 258

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
              +NP++ T++I++ G+ + G+++EA      M K+  + DVVTY +++ G+ +V ++ 
Sbjct: 259 SEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVN 318

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
           +A+++F+ M  GGV  +V +YN MI   CK   V+ A+ +F+EM  K  +P+  TYN +I
Sbjct: 319 KAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLI 378

Query: 355 RGLCHTGEMERALEFVG-----------------------------------RMKDDECE 379
            GLC +G++  AL+ V                                    +MKD+  +
Sbjct: 379 DGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQ 438

Query: 380 PNVQTYNIL-----------------------------------IRYFCDAGEIERGLEL 404
           P++ TY IL                                   I+ FCD    ++ L L
Sbjct: 439 PDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALAL 498

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
             KM    C+PN  TY I+I S+F + ++D   +A KLL EM+ RG +
Sbjct: 499 LSKMEDNGCIPNAKTYEIIILSLFEKDEND---MAEKLLREMIARGLL 543



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 191/380 (50%), Gaps = 10/380 (2%)

Query: 89  FFNILSYHPTYAHSPSSFDHAIDLAA--RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAE 146
           F  IL+ +PT    P  F+    L +  ++  Y+T  +L   M+   +     TF I+  
Sbjct: 44  FNRILNINPT----PPIFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILIN 99

Query: 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKA 205
            +   G    +  +F ++ + G   +  +  T++  LC + ++ +A +   KV    F  
Sbjct: 100 CFSQLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHL 159

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           + + Y  + NG C V +T+ AL++L+ +  + + PN+  YN ++    +   + EA+  +
Sbjct: 160 NKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLY 219

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
            EM  +    DVVTY+ ++ GF ++G++  A  +F+ M++  + P V T++ ++   CK+
Sbjct: 220 SEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKE 279

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
             V+ A  V   M+ +G  P+  TY  ++ G C   ++ +A      M       NVQ+Y
Sbjct: 280 GRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSY 339

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           NI+I  FC   +++  + LF++M     +P++ TYN LI  +    KS  +  A KL+ E
Sbjct: 340 NIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLC---KSGKISYALKLVDE 396

Query: 446 MVDRGFMPRKFTFNRVLNGL 465
           M DRG    K T+N +L+ L
Sbjct: 397 MHDRGVPHDKITYNSILDAL 416



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 156/285 (54%), Gaps = 1/285 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L ++M S  + P   TF+I+ + +   G+   A  +   M + G +  + ++ +++D  C
Sbjct: 253 LFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYC 312

Query: 185 KEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
             K+V KA ++F    +G   A+V SYN++ NG+C +K+ ++A+ + KEM  + + P++ 
Sbjct: 313 LVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVV 372

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN ++ G  ++G+I  A +   EM  R    D +TY +I+       ++ +A  +   M
Sbjct: 373 TYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKM 432

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            + G+ P + TY  +I  LCK   +++A  +FE+++ KGY     TY V+I+G C     
Sbjct: 433 KDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLF 492

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           ++AL  + +M+D+ C PN +TY I+I    +  E +   +L  +M
Sbjct: 493 DKALALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREM 537



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 105/207 (50%), Gaps = 1/207 (0%)

Query: 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV 198
           +++ I+   +    K D A+ +F  MH       + ++N+++D LCK  K+  A  L   
Sbjct: 337 QSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDE 396

Query: 199 FRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
              +    D I+YN I +  C   + +KA+ +L +M D G+ P++ TY I++ G  + G+
Sbjct: 397 MHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGR 456

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           +++A   F ++  +   I V TYT ++ GF       +A  +   M + G +P+  TY  
Sbjct: 457 LKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEI 516

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYM 344
           +I  L +KD  + A  +  EM+ +G +
Sbjct: 517 IILSLFEKDENDMAEKLLREMIARGLL 543



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 103/226 (45%), Gaps = 2/226 (0%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII 144
           KA   FN ++     A+   S++  I+   +++       L   M   ++ P   T+  +
Sbjct: 319 KAKSIFNTMAQGGVTANV-QSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSL 377

Query: 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-F 203
            +    +GK   A+K+   MH+ G      ++N+ILD LCK  +V+KA  L    + +  
Sbjct: 378 IDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGI 437

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
           + D+ +Y ++ +G C   R   A  + ++++ +G N  + TY ++++G+      ++A  
Sbjct: 438 QPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALA 497

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
              +M+   C  +  TY  I+       E   A  +   M+  G+L
Sbjct: 498 LLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREMIARGLL 543


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 106/357 (29%), Positives = 188/357 (52%), Gaps = 7/357 (1%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           R+ S  +     ++  +       G+   A+++   +    CR  +  +NTI+D LCK+K
Sbjct: 144 RLVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDK 203

Query: 188 KVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
            V  A++L+ ++F  +   +V++Y  +  G+C+V + +KA  +L EMV + +NPN+ T+N
Sbjct: 204 LVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFN 263

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
            ++ G  + G++ EA      M K     DV TY  ++ G+ +V E  +A+NVF+ M   
Sbjct: 264 TLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQM 323

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           GV   V +Y+ MI  L K   ++ A+ +FE M  +  +P+   Y+ +I GLC +G +  A
Sbjct: 324 GVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSA 383

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
           L++V  M D    PNV TY  LI   C + ++++ + L +K+       N+ TYNIL+  
Sbjct: 384 LKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDG 443

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           +    K   L  A K+  +++ +G      T++ ++NGL     + L  E L L S+
Sbjct: 444 LC---KDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLC---KESLFDEALTLLSK 494



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 175/353 (49%), Gaps = 4/353 (1%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            + + Y  V  L  RM+   +     T  I+   Y    + + A  +F  + + G +  +
Sbjct: 60  VKTKHYPIVIHLFQRMELHGIQSNYITLNILINSYCHLRQINSAFSVFAKILKLGYQPDI 119

Query: 174 NSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
            ++ T++  LC   +V+++ N   ++     K D +SY  + NG C + +T  AL +L++
Sbjct: 120 ITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRK 179

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           +      P++  YN ++ G  +   + +A+  + EM +++   +VVTYT++++GF +VG+
Sbjct: 180 IEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQ 239

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           + +A  + + MV   V P+V T+N ++  LCK+  +  A  +   M+ +G  P+  TYN 
Sbjct: 240 LDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNA 299

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           ++ G     E  +A      M       +V +Y+++I        ++  ++LFE M +  
Sbjct: 300 LMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNEN 359

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            +P++  Y+ LI  +    KS  +  A K + EM DRG  P   T+  +++ L
Sbjct: 360 VIPDVVAYSSLIDGLC---KSGRINSALKYVDEMHDRGQPPNVITYTSLIDAL 409



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 151/339 (44%), Gaps = 36/339 (10%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           ++  ID   + +  R  + L   M    + P   T+  +   +   G+ D+A  +   M 
Sbjct: 192 YNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMV 251

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTN 224
                 ++ +FNT++D LCKE K+ +A +L  V  +     DV +YN + +G+ LVK   
Sbjct: 252 LKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAG 311

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           KA  V   M   G+  ++ +Y++++ G  +   ++EA   F  M+      DVV Y++++
Sbjct: 312 KAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLI 371

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL----------- 333
            G    G I  A    D M + G  P+V TY ++I  LCK   V+ AI            
Sbjct: 372 DGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQ 431

Query: 334 ------------------------VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
                                   VF++++ KG+  +  TY+++I GLC     + AL  
Sbjct: 432 ANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCKESLFDEALTL 491

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           + +M+D  C P+   Y  +I  F +    ++  +L  +M
Sbjct: 492 LSKMEDKGCVPDAIAYETIINAFFEKDMNDKAEKLLREM 530



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 126/260 (48%), Gaps = 3/260 (1%)

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
            + + + M   G+  N  T NI++  Y    QI  A+  F ++ K   + D++TYTT++ 
Sbjct: 68  VIHLFQRMELHGIQSNYITLNILINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIR 127

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
           G  + G++K + N  D +V+ G+     +Y  +I  LCK      A+ +  ++ G+   P
Sbjct: 128 GLCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRP 187

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           +   YN +I GLC    +  A +    M +    PNV TY  LI  FC  G++++   L 
Sbjct: 188 DVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLL 247

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            +M      PN+ T+N L+  +    K   +  A  L+  M+  G  P  FT+N +++G 
Sbjct: 248 NEMVLKNVNPNVCTFNTLVDGLC---KEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGY 304

Query: 466 LLIGNQGLAKEILRLQSRCG 485
            L+   G AK +  + ++ G
Sbjct: 305 FLVKEAGKAKNVFNIMAQMG 324



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 136/272 (50%), Gaps = 1/272 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  +D   +    R   +LV  M    +GP   T+  + + Y    +A +A  +F  M
Sbjct: 261 TFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIM 320

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
            + G    ++S++ ++  L K K +++A +LF+  R +    DV++Y+ + +G C   R 
Sbjct: 321 AQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRI 380

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           N AL+ + EM DRG  PN+ TY  ++    ++ Q+++A     ++K +  + ++ TY  +
Sbjct: 381 NSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNIL 440

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           V G    G +  A+ VF  ++  G    V TY+ MI  LCK+   + A+ +  +M  KG 
Sbjct: 441 VDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCKESLFDEALTLLSKMEDKGC 500

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           +P++  Y  +I         ++A + +  M D
Sbjct: 501 VPDAIAYETIINAFFEKDMNDKAEKLLREMID 532



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 119/268 (44%), Gaps = 3/268 (1%)

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           N A++    M+     P +  +  +L    +          F  M+    + + +T   +
Sbjct: 31  NDAIDSFNRMLRMRPPPPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLNIL 90

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++ +  + +I  A +VF  ++  G  P + TY  +I+ LC    V+ ++   + +V +G 
Sbjct: 91  INSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGI 150

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
             +  +Y  +I GLC  G+   AL  + +++ + C P+V  YN +I   C    +    +
Sbjct: 151 KLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFD 210

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           L+ +M      PN+ TY  LI    +  + D    A  LL EMV +   P   TFN +++
Sbjct: 211 LYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDK---AFGLLNEMVLKNVNPNVCTFNTLVD 267

Query: 464 GLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           GL   G    AK ++ +  + G  P  F
Sbjct: 268 GLCKEGKMREAKSLVAVMMKEGVGPDVF 295


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 180/361 (49%), Gaps = 39/361 (10%)

Query: 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV 198
           + F  +A  Y SAG  +++V+    M  H C  + +++N+++D   K    +KA  +++V
Sbjct: 55  RIFIELARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRV 114

Query: 199 F-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
             +   + D  ++NV+ N +   KR +   ++ +EM ++  +PN+ TY+I++    + G 
Sbjct: 115 MGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGG 174

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           +E+A + FL+MK R C  ++ TYT+++ G G  G + +A  +F+ M + G++ +   YN+
Sbjct: 175 VEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNS 234

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTT---------------------------- 349
           +I  L +    + A  +F EM+ KG  P+  T                            
Sbjct: 235 LIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVG 294

Query: 350 -------YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
                  YNV+I  LC +  ++ A E  G +++D   P+V T+N L+   C +G I    
Sbjct: 295 CALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAF 354

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
            L   M    C P++  YN LI  +   +KS  +  AG+LL+EM   G+ P   T+N ++
Sbjct: 355 ILLGDMKRAGCTPDVTVYNTLIDGL---RKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLI 411

Query: 463 N 463
           +
Sbjct: 412 D 412



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 106/371 (28%), Positives = 180/371 (48%), Gaps = 5/371 (1%)

Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           A + S+++  ID   +    +    +   M    L P   TF ++   +  A + D   K
Sbjct: 86  ALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWK 145

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWC 218
           +F  M    C  ++ +++ ++D +CK   VEKA  +F   + +  + ++ +Y  + +G  
Sbjct: 146 LFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLG 205

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
                +KA  + +EM   GL      YN ++ G  R+G+ + A + F EM  +  + D V
Sbjct: 206 KSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHV 265

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           T+T++V+G GV G    AR +F    + G    V  YN +I  LCK   ++ A  +F E+
Sbjct: 266 TFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGEL 325

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
              G +P+  T+N ++ GLC +G +  A   +G MK   C P+V  YN LI     +G +
Sbjct: 326 EEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRV 385

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           E   +L  +M S    P++ TYN LI       + +D L   +L  E+  +GF     T+
Sbjct: 386 EEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDAL---RLFEEISAKGF-ANTVTY 441

Query: 459 NRVLNGLLLIG 469
           N +LNGL + G
Sbjct: 442 NTILNGLCMAG 452



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/396 (24%), Positives = 181/396 (45%), Gaps = 42/396 (10%)

Query: 70  QLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRM 129
            L+D  +K  +    KAL  + ++           +F+  ++   + +   +VW L   M
Sbjct: 94  SLIDAFVKAGYTQ--KALAVYRVMG-QSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEM 150

Query: 130 KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV 189
           ++ +  P   T++I+ +     G  ++A+K+FL M   GCR ++ ++ +++D L K   V
Sbjct: 151 QNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHV 210

Query: 190 EKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
           +KA+ LF+    +   A  + YN + +G     R + A ++ +EM+ +GL P+  T+  +
Sbjct: 211 DKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSL 270

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           + G   AG+  EA R F E +   C +DV  Y  ++        +  A  +F  +   G+
Sbjct: 271 VYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGL 330

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
           +P V T+NA++  LCK   + +A ++  +M   G  P+ T YN +I GL  +G +E A +
Sbjct: 331 VPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQ 390

Query: 369 FVGRMK---------------DDECE-------------------PNVQTYNILIRYFCD 394
            +  M+               D+ C+                    N  TYN ++   C 
Sbjct: 391 LLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKGFANTVTYNTILNGLCM 450

Query: 395 AGEIERGLELFEKMG----SGVCLPNLDTYNILISS 426
           AG ++   +LF  M      GV  P+  TY  L++ 
Sbjct: 451 AGRVDEAYKLFNGMKQETVDGVIDPDFVTYTTLLNG 486



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 140/277 (50%), Gaps = 6/277 (2%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L   M S  L  T+  +  +      +G+AD A K+F  M   G +    +F +++  L 
Sbjct: 216 LFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLG 275

Query: 185 KEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
              +  +A  +F+  R    A DV  YNV+ +  C  KR ++A E+  E+ + GL P++ 
Sbjct: 276 VAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVY 335

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           T+N ++ G  ++G+I +A+    +MK+  C  DV  Y T++ G    G ++ A  +   M
Sbjct: 336 TFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEM 395

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            + G  P V TYN +I   CK   +E+A+ +FEE+  KG+  N+ TYN ++ GLC  G +
Sbjct: 396 QSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKGF-ANTVTYNTILNGLCMAGRV 454

Query: 364 ERALEFVGRMK----DDECEPNVQTYNILIRYFCDAG 396
           + A +    MK    D   +P+  TY  L+     AG
Sbjct: 455 DEAYKLFNGMKQETVDGVIDPDFVTYTTLLNGARQAG 491



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 92/200 (46%), Gaps = 3/200 (1%)

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           +  +  G+   G ++++      M       + + YN++I    K    + A+ V+  M 
Sbjct: 57  FIELARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMG 116

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             G  P++ T+NV++        ++   +    M++  C PNV TY+ILI   C  G +E
Sbjct: 117 QSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVE 176

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
           + L++F  M S  C PN+ TY  +I  +    KS  +  A  L  EM   G +  +  +N
Sbjct: 177 KALKVFLDMKSRGCRPNIFTYTSMIDGL---GKSGHVDKAFFLFEEMTSEGLVATRVVYN 233

Query: 460 RVLNGLLLIGNQGLAKEILR 479
            +++GL   G    A ++ R
Sbjct: 234 SLIHGLGRSGRADAAAKLFR 253



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 7/153 (4%)

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
           + R+ D    + L+  MK     P    +  + +    +G+ + A ++ L M   G    
Sbjct: 347 SGRIHD---AFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPD 403

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVL-- 230
           + ++NT++D  CK  ++E A  LF+    K  A+ ++YN I NG C+  R ++A ++   
Sbjct: 404 VVTYNTLIDESCKGGRIEDALRLFEEISAKGFANTVTYNTILNGLCMAGRVDEAYKLFNG 463

Query: 231 --KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
             +E VD  ++P+  TY  +L G  +AG  E A
Sbjct: 464 MKQETVDGVIDPDFVTYTTLLNGARQAGLSELA 496


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 99/378 (26%), Positives = 182/378 (48%), Gaps = 39/378 (10%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L  +M      P   T+  +       G    A+++  SM +  C+  +  + +I+D LC
Sbjct: 157 LFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLC 216

Query: 185 KEKKVEKAYNLFKVFRG------------------------------------KFKADVI 208
           K+++V +A+NLF    G                                    K   DV+
Sbjct: 217 KDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVV 276

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
            ++ + +  C   +  +A E++  M+ RG+ P++ TY  ++ G+    +++EA + F  M
Sbjct: 277 IFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMM 336

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
            ++    DV++YTT+++G+  + +I +A  +F+ M     +P   TYN ++  LC    +
Sbjct: 337 VRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRL 396

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           ++AI +F EMV +G MP+  TY++++  LC    +E A+  +  ++     P++Q YNI+
Sbjct: 397 QDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNII 456

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           I   C AGE+E   +LF  + S    P++ TYNI+I  +  R   ++   A KL +EM  
Sbjct: 457 IDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNE---ANKLFMEMDG 513

Query: 449 RGFMPRKFTFNRVLNGLL 466
               P   T+N +  G L
Sbjct: 514 NDCSPDGCTYNTIARGFL 531



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 110/384 (28%), Positives = 189/384 (49%), Gaps = 11/384 (2%)

Query: 86  ALHFFN-ILSYHPTYAHSPSSFDHAIDLA--ARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           AL  FN +L  HP     PS  D A  L   A+++ Y TV +L  +M S  + P   T  
Sbjct: 49  ALSSFNRLLHMHP----PPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLN 104

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRG 201
           I+   +    +   A  +   + + G +    +F T++  LC E K+ +A +LF K+   
Sbjct: 105 ILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDE 164

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
            F+ +V++Y  + NG C V  T+ A+ +L+ M      P++  Y  ++    +  Q+ EA
Sbjct: 165 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEA 224

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
           +  F +M  +    D+ TYT++VH    + E K    + + MVN  +LP V  ++ ++  
Sbjct: 225 FNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDA 284

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           LCK+  V  A  + + M+ +G  P+  TY  ++ G C   EM+ A++    M      P+
Sbjct: 285 LCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPD 344

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
           V +Y  LI  +C   +I++ + LFE+M     +P+  TYN L+  +    +  D +    
Sbjct: 345 VISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIA--- 401

Query: 442 LLIEMVDRGFMPRKFTFNRVLNGL 465
           L  EMV RG MP   T++ +L+ L
Sbjct: 402 LFHEMVARGQMPDLVTYSILLDSL 425



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 159/322 (49%), Gaps = 3/322 (0%)

Query: 90  FNILSYHPTYAHSPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
           FN+ S       SP  F +   +     L +++ V TL+++M +  + P    F+ + + 
Sbjct: 225 FNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDA 284

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKAD 206
               GK   A +I   M + G    + ++ T++D  C + ++++A  +F +  R  F  D
Sbjct: 285 LCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPD 344

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           VISY  + NG+C + + +KA+ + +EM  +   P+  TYN ++ G    G++++A   F 
Sbjct: 345 VISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFH 404

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           EM  R    D+VTY+ ++        ++ A  +   +    + P +  YN +I  +C+  
Sbjct: 405 EMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAG 464

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            +E A  +F  +  KG  P+  TYN++I GLC  G +  A +    M  ++C P+  TYN
Sbjct: 465 ELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYN 524

Query: 387 ILIRYFCDAGEIERGLELFEKM 408
            + R F    E  R ++L E+M
Sbjct: 525 TIARGFLQNNETLRAIQLLEEM 546



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 150/318 (47%), Gaps = 19/318 (5%)

Query: 163 SMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVIS------------- 209
           S+H +    +L+SFN +L +      V+ A  L  + + K  + V+S             
Sbjct: 40  SLHFNTLDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPN 99

Query: 210 ---YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
               N++ N +C + R   A  VL +++  G  P+ TT+  +++G    G+I EA   F 
Sbjct: 100 VYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFD 159

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           +M     + +VVTY T+++G   VG    A  +   M  G   P V  Y ++I  LCK  
Sbjct: 160 KMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDR 219

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            V  A  +F +MVG+G  P+  TY  ++  LC+  E +     + +M + +  P+V  ++
Sbjct: 220 QVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFS 279

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            ++   C  G++    E+ + M      P++ TY  L+    ++ + D+   A K+   M
Sbjct: 280 TVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDE---AVKVFDMM 336

Query: 447 VDRGFMPRKFTFNRVLNG 464
           V +GF P   ++  ++NG
Sbjct: 337 VRKGFAPDVISYTTLING 354



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 111/259 (42%), Gaps = 36/259 (13%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           +V  M    + P   T+  + + +    + D AVK+F  M   G    + S+ T+++  C
Sbjct: 297 IVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYC 356

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG------ 237
           K  K++KA  LF+ + R ++  D  +YN +  G C V R   A+ +  EMV RG      
Sbjct: 357 KIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLV 416

Query: 238 -----------------------------LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
                                        LNP++  YNI++ G  RAG++E A   F  +
Sbjct: 417 TYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNL 476

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
             +     V TY  ++HG    G +  A  +F  M      P   TYN + +   + +  
Sbjct: 477 SSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNET 536

Query: 329 ENAILVFEEMVGKGYMPNS 347
             AI + EEM+ +G+  +S
Sbjct: 537 LRAIQLLEEMLARGFSADS 555



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 64/170 (37%), Gaps = 38/170 (22%)

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           PS+  +  ++  + K       + +  +M   G  PN  T N++I   CH   +  A   
Sbjct: 63  PSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSV 122

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
           + ++     +P+  T+  LIR  C  G+I   L LF+K                      
Sbjct: 123 LAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDK---------------------- 160

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
                           M+D GF P   T+  ++NGL  +GN   A  +LR
Sbjct: 161 ----------------MIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLR 194


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 102/325 (31%), Positives = 169/325 (52%), Gaps = 4/325 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   TF+ +       G    A+++   M   GC+ +LN++  ++D  CK+ ++E+A  +
Sbjct: 380 PDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLI 439

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            +    K F  + + YN + +  C   + ++AL++  EM  +G  P++ T+N ++ G  R
Sbjct: 440 LREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCR 499

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
             ++E+A   + +M       + VT+ T++H F   GEI+ A  + + M+  G      T
Sbjct: 500 VDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEIT 559

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN +I+ LCK  +VE  + +FEEM+ KG  P+  T N++I G C  G++  ALEF+  M 
Sbjct: 560 YNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMI 619

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
                P++ TYN LI   C  G I+  L LFEK+ +    P+  TYN LI  +      D
Sbjct: 620 HRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFD 679

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFN 459
           D   A  LL   V+ GF+P   T+N
Sbjct: 680 D---ACFLLYRGVENGFVPNDVTWN 701



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 121/430 (28%), Positives = 206/430 (47%), Gaps = 17/430 (3%)

Query: 54  RTLTQTLHCPSLHWTPQLVDQIIKR-LWNHALKALHFFNILSYHPTYAHSPSSFDHAIDL 112
           R +T+    P+      L+D + KR   + ALK L    ++   P      ++F+  I  
Sbjct: 234 RDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPP----DVNTFNTVIYG 289

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
             RL        LV RM      P   T+  +        + D A  +   +       +
Sbjct: 290 FCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVP----GPN 345

Query: 173 LNSFNTILDLLCKEKKVEKAYNLF--KVFRGKFKADVISYNVIANGWCLVKRTNKALEVL 230
           +  FNT+++   +  ++ +A      K+    +  DV +++ + NG C       ALE++
Sbjct: 346 VVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELV 405

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
            +M  +G  PNL TY I++ G+ + GQ+EEA     EM  +   ++ V Y  ++      
Sbjct: 406 NDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKH 465

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           G+I  A ++F  M + G  P + T+N++I  LC+ D +E+A+ ++ +MV +G + NS T+
Sbjct: 466 GKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTF 525

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           N +I      GE++ AL+ V  M    C  +  TYN LI+  C  G +E+GL LFE+M  
Sbjct: 526 NTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIR 585

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
               P++ T NILI+      K  + L   + + +M+ RGF P   T+N ++NGL     
Sbjct: 586 KGLTPSIITCNILINGFCTAGKVHNAL---EFMRDMIHRGFSPDIVTYNSLINGLC---K 639

Query: 471 QGLAKEILRL 480
           +G  +E L L
Sbjct: 640 RGRIQEALNL 649



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 157/317 (49%), Gaps = 1/317 (0%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           + +   LV+ M +    P   T+ I+ + +   G+ + A  I   M   G   +   +N 
Sbjct: 398 FGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNA 457

Query: 179 ILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           ++  LCK  K+ +A ++F     K  K D+ ++N +  G C V     AL + ++MV  G
Sbjct: 458 LISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEG 517

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
           +  N  T+N ++  + R G+I+EA +   +M  R C +D +TY  ++      G +++  
Sbjct: 518 VIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGL 577

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
            +F+ M+  G+ PS+ T N +I   C    V NA+    +M+ +G+ P+  TYN +I GL
Sbjct: 578 GLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGL 637

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
           C  G ++ AL    +++ +  +P+  TYN LI + C  G  +    L  +      +PN 
Sbjct: 638 CKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYRGVENGFVPND 697

Query: 418 DTYNILISSMFVRKKSD 434
            T+NIL+ +   +  S+
Sbjct: 698 VTWNILVYNFGKQSNSE 714



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 109/393 (27%), Positives = 189/393 (48%), Gaps = 14/393 (3%)

Query: 92  ILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149
           +L     Y   PS  S++  +D+            + + M S  + P   TF ++ +   
Sbjct: 162 LLDMKGVYCCEPSFRSYNVVLDVLVVGNCPSVASNVFYDMLSKGVSPNDYTFGLVMKALC 221

Query: 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVI 208
              + D A  +   M +HGC  +   + T++D L K  +V++A  L  ++F      DV 
Sbjct: 222 MVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVN 281

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           ++N +  G+C + R  +  +++  M+ +G  PN  TY  ++ G  +  +I+EA     ++
Sbjct: 282 TFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKV 341

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARN-VFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
                  +VV + T+V+GF   G +  A   V+D M+N G +P V T++ ++  LCKK  
Sbjct: 342 PGP----NVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGL 397

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
             +A+ +  +M  KG  PN  TY ++I G C  G++E A   +  M       N   YN 
Sbjct: 398 FGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNA 457

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           LI   C  G+I   L++F +M S  C P++ T+N LI   F   + D++  A  L  +MV
Sbjct: 458 LISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLI---FGLCRVDEMEDALALYRDMV 514

Query: 448 DRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
             G +    TFN +++  L    +G  +E L+L
Sbjct: 515 LEGVIANSVTFNTLIHAFL---RRGEIQEALKL 544



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/415 (26%), Positives = 182/415 (43%), Gaps = 39/415 (9%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           ++  F        Y HS S +   ID       ++ +  L+ +MK   +   +  F +I 
Sbjct: 87  SMEIFKWAGAQKGYCHSFSVYYLLIDKLGAAAGFKVIDRLLLQMKEEGIVFRESLFILIM 146

Query: 146 ERYVSAGKADRAVKIFLSMHE-HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-F 203
           + Y  AG   +A ++ L M   + C  S  S+N +LD+L        A N+F     K  
Sbjct: 147 KYYGRAGLPGQATRLLLDMKGVYCCEPSFRSYNVVLDVLVVGNCPSVASNVFYDMLSKGV 206

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
             +  ++ ++    C+V   + A  +L++M   G  PN   Y  ++    +  +++EA +
Sbjct: 207 SPNDYTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALK 266

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
              EM    C  DV T+ T+++GF  +  +     + D M+  G  P+  TY  ++  LC
Sbjct: 267 LLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLC 326

Query: 324 KKDSVENA--------------------------------ILVFEEMVGKGYMPNSTTYN 351
           K   ++ A                                  V+++M+  GY+P+  T++
Sbjct: 327 KTCRIDEAQALLSKVPGPNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFS 386

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER-GLELFEKMGS 410
            ++ GLC  G    ALE V  M    C+PN+ TY ILI  FC  G++E  GL L E +  
Sbjct: 387 TLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTK 446

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           G  L N   YN LIS++    K  + L    +  EM  +G  P  FTFN ++ GL
Sbjct: 447 GFSL-NTVGYNALISALCKHGKIHEAL---DMFGEMSSKGCKPDIFTFNSLIFGL 497



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 74/166 (44%), Gaps = 5/166 (3%)

Query: 327 SVENAILVFE-EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
            VE ++ +F+     KGY  + + Y ++I  L      +     + +MK++        +
Sbjct: 83  DVETSMEIFKWAGAQKGYCHSFSVYYLLIDKLGAAAGFKVIDRLLLQMKEEGIVFRESLF 142

Query: 386 NILIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLI 444
            ++++Y+  AG   +   L   M G   C P+  +YN+++  + V        VA  +  
Sbjct: 143 ILIMKYYGRAGLPGQATRLLLDMKGVYCCEPSFRSYNVVLDVLVVGNCPS---VASNVFY 199

Query: 445 EMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
           +M+ +G  P  +TF  V+  L ++     A  +LR  ++ G +P  
Sbjct: 200 DMLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNS 245


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/379 (29%), Positives = 184/379 (48%), Gaps = 41/379 (10%)

Query: 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVIS 209
           G+   AVK+   + +   R ++  +NTI+D LCK+K V +AY+L+     RG F  D I+
Sbjct: 129 GETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIF-PDAIT 187

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           Y  +  G+CL+ +   A  +L EM+ + +NP +  YNI++    + G ++EA      M 
Sbjct: 188 YTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMT 247

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
           K   +  VVTY+T++ G+ +VGE++ A+ +F  MV  GV P+V +YN MI  LCK   V+
Sbjct: 248 KEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVD 307

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG------------------ 371
            A+ +  EM+ K  +P++ TYN +I GLC +G +  AL  +                   
Sbjct: 308 EAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLL 367

Query: 372 -----------------RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
                            +MK+   +P + TY  LI   C  G ++   ELF+ +    C 
Sbjct: 368 DALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCC 427

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
            ++ TY ++IS +      D+ L       +M D G +P   TF  ++  L        A
Sbjct: 428 IDVWTYTVMISGLCKEGMFDEALAIKS---KMEDNGCIPNAVTFEIIIRSLFEKDENDKA 484

Query: 475 KEILRLQSRCGRLPRQFKL 493
           +++L      G L   FK+
Sbjct: 485 EKLLHEMIAKGLLVLDFKV 503



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 171/352 (48%), Gaps = 4/352 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           ++  ID   + +     + L   M +  + P   T+  +   +   G+   A  +   M 
Sbjct: 153 YNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMI 212

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTN 224
                  +  +N +++ LCKE  V++A NL  V  +   K  V++Y+ + +G+CLV    
Sbjct: 213 LKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQ 272

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
            A ++   MV  G+NPN+ +YNI++ G  +  +++EA     EM  +    D VTY +++
Sbjct: 273 NAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLI 332

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            G    G I  A N+ + M + G    V TY +++  LCK  +++ A  +F +M  +G  
Sbjct: 333 DGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQ 392

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           P   TY  +I GLC  G ++ A E    +    C  +V TY ++I   C  G  +  L +
Sbjct: 393 PTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAI 452

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
             KM    C+PN  T+ I+I S+F + ++D    A KLL EM+ +G +   F
Sbjct: 453 KSKMEDNGCIPNAVTFEIIIRSLFEKDENDK---AEKLLHEMIAKGLLVLDF 501



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 185/378 (48%), Gaps = 8/378 (2%)

Query: 101 HSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           H+P    F+  +   A+++ Y T  +L  +M+   +     T  I+   +   G+   + 
Sbjct: 6   HTPPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSF 65

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGW 217
            +   + + G +    + NT++  LC + +V+K+ +   KV    F+ D +SY  + NG 
Sbjct: 66  SVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGL 125

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           C +  T  A+++L+ + DR   PN+  YN ++ G  +   + EA+  + EM  R    D 
Sbjct: 126 CKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDA 185

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           +TYTT+++GF ++G++  A ++ D M+   + P V  YN +I  LCK+ +V+ A  +   
Sbjct: 186 ITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAV 245

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M  +G  P   TY+ ++ G C  GE++ A +    M      PNV +YNI+I   C    
Sbjct: 246 MTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKR 305

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           ++  + L  +M     +P+  TYN LI  +    KS  +  A  L+ EM  RG      T
Sbjct: 306 VDEAMNLLREMLHKNMVPDTVTYNSLIDGLC---KSGRITSALNLMNEMHHRGQPADVVT 362

Query: 458 FNRVLNGLLLIGNQGLAK 475
           +  +L+   L  NQ L K
Sbjct: 363 YTSLLDA--LCKNQNLDK 378



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 129/285 (45%), Gaps = 3/285 (1%)

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           +I +N I      +K+   A+ + K+M  +G+  N  T NI++  +   GQ+  ++    
Sbjct: 10  IIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFSVLG 69

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           ++ K   + D +T  T++ G  + GE+K++ +  D +V  G      +Y  ++  LCK  
Sbjct: 70  KILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIG 129

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
               A+ +   +  +   PN   YN +I GLC    +  A +    M      P+  TY 
Sbjct: 130 ETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYT 189

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            LI  FC  G++     L ++M      P +  YNILI+++    K  ++  A  LL  M
Sbjct: 190 TLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALC---KEGNVKEAKNLLAVM 246

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
              G  P   T++ +++G  L+G    AK+I     + G  P  +
Sbjct: 247 TKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVY 291



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/183 (19%), Positives = 70/183 (38%), Gaps = 35/183 (19%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           AL+  N + +H        ++   +D   + ++      L  +MK   + PT  T+  + 
Sbjct: 344 ALNLMNEM-HHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALI 402

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA 205
           +     G+   A ++F  +   GC   + ++  ++  LCKE              G F  
Sbjct: 403 DGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKE--------------GMF-- 446

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
                             ++AL +  +M D G  PN  T+ I+++  F   + ++A +  
Sbjct: 447 ------------------DEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLL 488

Query: 266 LEM 268
            EM
Sbjct: 489 HEM 491


>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 579

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 157/299 (52%), Gaps = 4/299 (1%)

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIAN 215
           A +++  M   G   ++ +F+ ++D LCK++K ++A NL  +   K  K +V++Y  I +
Sbjct: 166 AYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMD 225

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
           G+CLV + NKAL +   MV  G+ PN+  YNI++ G  +  +++EA   F EM  +K   
Sbjct: 226 GYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINP 285

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
           DVVTY  ++ G   +G+I  +  + D M + G    + TYN+++  LCK   ++ AI + 
Sbjct: 286 DVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLV 345

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
           +E+  +G  PN  TY  +I GLC  G +E A      +  +     V TYN++I   C  
Sbjct: 346 KEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKK 405

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
           G  +  L L  +M    C+P+  +Y  +I   +   +  + +   KLL  M+ RG   R
Sbjct: 406 GLFDEALALLSRMEDNACIPDAVSYETII---YALSEKGETVKTNKLLCAMIVRGLSKR 461



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 159/304 (52%), Gaps = 1/304 (0%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           +   ID   + +     + L   M +  + P   TF+I+ +      K  +A+ +   M 
Sbjct: 150 YSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMM 209

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTN 224
           + G + ++ ++  I+D  C   +V KA N+F V  +   + +V  YN+I NG C  KR +
Sbjct: 210 KKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVD 269

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           +A+ + KEM  + +NP++ TYNI++ G  + G+I  +     EM+     +D++TY +++
Sbjct: 270 EAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLL 329

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
           H       + +A  +   + + G+ P+V TY  +I  LCK   +E+A ++F+E++ +GY 
Sbjct: 330 HALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYH 389

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
               TYNV+I GLC  G  + AL  + RM+D+ C P+  +Y  +I    + GE  +  +L
Sbjct: 390 ITVWTYNVMINGLCKKGLFDEALALLSRMEDNACIPDAVSYETIIYALSEKGETVKTNKL 449

Query: 405 FEKM 408
              M
Sbjct: 450 LCAM 453



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/362 (27%), Positives = 186/362 (51%), Gaps = 8/362 (2%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
           +++++ ++  +   P   TF  + +     G+A  A+     +  HG +    S+  +++
Sbjct: 64  LFSILTKILKMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAILMN 123

Query: 182 LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
            LCK  +   A  + +  +    ADV+ Y+ I +  C  K    A  +  EM+ +G+ PN
Sbjct: 124 GLCKMGETRAAMQMLR--KTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPN 181

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           + T++I++    +  + ++A      M K+  + +VVTY  I+ G+ +V ++ +A N+F+
Sbjct: 182 VYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFN 241

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            MV  GV P+V  YN +I  LCKK  V+ A+ +F+EM  K   P+  TYN++I GLC  G
Sbjct: 242 VMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLG 301

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
           ++  +LE V  M+      ++ TYN L+   C    +++ + L +++      PN+ TY 
Sbjct: 302 KISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYT 361

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481
            LI  +    + +D  V   +  E++  G+    +T+N ++NGL     +GL  E L L 
Sbjct: 362 TLIDGLCKDGRLEDAYV---IFQEILTEGYHITVWTYNVMINGLC---KKGLFDEALALL 415

Query: 482 SR 483
           SR
Sbjct: 416 SR 417



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 133/259 (51%), Gaps = 1/259 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F   +D   + R  +    L+  M    + P   T+  I + Y    + ++A+ IF  M
Sbjct: 184 TFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVM 243

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRT 223
            + G   ++  +N I++ LCK+K+V++A NLFK     K   DV++YN++ +G C + + 
Sbjct: 244 VQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKI 303

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + +LE++ EM   G   ++ TYN +L    +   +++A     E+K +  + +V TYTT+
Sbjct: 304 STSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTL 363

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G    G ++ A  +F  ++  G   +V TYN MI  LCKK   + A+ +   M     
Sbjct: 364 IDGLCKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDEALALLSRMEDNAC 423

Query: 344 MPNSTTYNVVIRGLCHTGE 362
           +P++ +Y  +I  L   GE
Sbjct: 424 IPDAVSYETIIYALSEKGE 442



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 148/314 (47%), Gaps = 9/314 (2%)

Query: 175 SFNTILDLLCKEKKVEKAYNLFKV--FRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
            FN IL  L K      A +LF+   F G  K  +++  ++ N +C          +L +
Sbjct: 12  QFNHILASLVKINHYPTAISLFRQLEFNG-IKPSIVTLTILMNCYCHTGGITFLFSILTK 70

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           ++  G  PN  T+  ++KG    GQ  EA  F   +     ++D V+Y  +++G   +GE
Sbjct: 71  ILKMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAILMNGLCKMGE 130

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
            + A  +        V   V  Y+ +I  LCK   V +A  ++ EM+ KG  PN  T+++
Sbjct: 131 TRAAMQMLR---KTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSI 187

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           ++  LC   + ++A+  +  M     +PNV TY  ++  +C   ++ + L +F  M    
Sbjct: 188 LVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEG 247

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
             PN+  YNI+I+ +  +K+ D+   A  L  EM  +   P   T+N +++GL  +G   
Sbjct: 248 VEPNVWCYNIIINGLCKKKRVDE---AMNLFKEMHWKKINPDVVTYNILIDGLCKLGKIS 304

Query: 473 LAKEILRLQSRCGR 486
            + E++      G+
Sbjct: 305 TSLELVDEMRSIGK 318



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 85/189 (44%), Gaps = 6/189 (3%)

Query: 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE 336
           ++ +  I+     +     A ++F  +   G+ PS+ T   ++   C    +     +  
Sbjct: 10  ILQFNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTGGITFLFSILT 69

Query: 337 EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
           +++  GY PNS T+  +I+G+C  G+   AL F   +     + +  +Y IL+   C  G
Sbjct: 70  KILKMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAILMNGLCKMG 129

Query: 397 EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
           E    +++  K        ++  Y+ +I S+   K   D   A +L  EM+ +G  P  +
Sbjct: 130 ETRAAMQMLRKTWVNA---DVVMYSTIIDSLCKGKFVTD---AYRLYSEMIAKGIFPNVY 183

Query: 457 TFNRVLNGL 465
           TF+ +++ L
Sbjct: 184 TFSILVDAL 192


>gi|22135795|gb|AAM91084.1| AT4g28010/T13J8_120 [Arabidopsis thaliana]
          Length = 704

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 117/387 (30%), Positives = 191/387 (49%), Gaps = 20/387 (5%)

Query: 96  HPTYAHSPSSFDHAIDLAARL--------------RDYRTVWTLVHRMKSLSLGPTQKTF 141
           +P   ++ S F  A+D  + L              R++   ++   +M          + 
Sbjct: 51  NPQLKNAVSVFQQAVDSGSSLAFAGSNLMAKLVRSRNHELAFSFYRKMLETDTFINFVSL 110

Query: 142 AIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR- 200
           + + E YV   K   A  +   M + G   ++ + N +L  LC+  +  KA +L +  R 
Sbjct: 111 SGLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRR 170

Query: 201 GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
                DV SYN +  G+C  K   KALE+  EM   G + +L T+ I++  + +AG+++E
Sbjct: 171 NSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDE 230

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
           A  F  EMK    E D+V YT+++ GF   GE+ R + +FD ++  G  P   TYN +I+
Sbjct: 231 AMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIR 290

Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
             CK   ++ A  +FE M+ +G  PN  TY  +I GLC  G+ + AL+ +  M + + EP
Sbjct: 291 GFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQPLNLMIEKDEEP 350

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAG 440
           N  TYNI+I   C  G +   +E+ E M      P+  TYNIL+  +  +    DL  A 
Sbjct: 351 NAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKG---DLDEAS 407

Query: 441 KLLIEMV-DRGFM-PRKFTFNRVLNGL 465
           KLL  M+ D  +  P   ++N +++GL
Sbjct: 408 KLLYLMLKDSSYTDPDVISYNALIHGL 434



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 116/478 (24%), Positives = 207/478 (43%), Gaps = 80/478 (16%)

Query: 90  FNILSYHPTYAHSPSSFDHAIDLAARLRDYRT--VWTLVHRMKSLSLGPTQKTFAIIAER 147
           F +L+       + + ++H I L    R+       +L+  M+  SL P   ++  +   
Sbjct: 127 FGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRG 186

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV--FRGKFKA 205
           +    + ++A+++   M   GC  SL ++  ++D  CK  K+++A    K   F G  +A
Sbjct: 187 FCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMG-LEA 245

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           D++ Y  +  G+C     ++   +  E+++RG +P   TYN +++G+ + GQ++EA   F
Sbjct: 246 DLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIF 305

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
             M +R    +V TYT ++ G   VG+ K A    + M+     P+  TYN +I  LCK 
Sbjct: 306 EFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQPLNLMIEKDEEPNAVTYNIIINKLCKD 365

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC--EPNVQ 383
             V +A+ + E M  +   P++ TYN+++ GLC  G+++ A + +  M  D    +P+V 
Sbjct: 366 GLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVI 425

Query: 384 TYNILIRYFCD-----------------------------------AGEIERGLELFEKM 408
           +YN LI   C                                    AG++ + +EL++++
Sbjct: 426 SYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQI 485

Query: 409 GSGVCLPNLDTY-----------------------------------NILISSMFVRKKS 433
                + N DTY                                   N L+SS+    K 
Sbjct: 486 SDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLC---KE 542

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
             L  A +L  EM      P   +FN +++G L  G+   A+ +L   SR G  P  F
Sbjct: 543 GSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLF 600



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 165/349 (47%), Gaps = 7/349 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+ II  +    G    AV+I   M +   R    ++N +L  LC +  +++A  L
Sbjct: 350 PNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKL 409

Query: 196 FKVF---RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
             +          DVISYN + +G C   R ++AL++   +V++    +  T NI+L   
Sbjct: 410 LYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNST 469

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
            +AG + +A   + ++   K   +  TYT ++ GF   G +  A+ +   M    + PSV
Sbjct: 470 LKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSV 529

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
             YN ++  LCK+ S++ A  +FEEM      P+  ++N++I G    G+++ A   +  
Sbjct: 530 FDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVG 589

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           M      P++ TY+ LI  F   G ++  +  F+KM      P+    + ++     + +
Sbjct: 590 MSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGE 649

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL-LIGNQGLAKEILRL 480
           +D L    +L+ ++VD+  +  K     V++ +     N  LAK +LR+
Sbjct: 650 TDKLT---ELVKKLVDKDIVLDKELTCTVMDYMCNSSANMDLAKRLLRV 695



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 144/325 (44%), Gaps = 40/325 (12%)

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIAN 215
           AV +F    + G   +    N +  L+ + +  E A++ + K+       + +S + +  
Sbjct: 57  AVSVFQQAVDSGSSLAFAGSNLMAKLV-RSRNHELAFSFYRKMLETDTFINFVSLSGLLE 115

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
            +  +++T  A  VL  M+ RG   N+  +NI+LKG  R  +  +A     EM++     
Sbjct: 116 CYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRN---- 171

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
                                           ++P V +YN +I+  C+   +E A+ + 
Sbjct: 172 -------------------------------SLMPDVFSYNTVIRGFCEGKELEKALELA 200

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
            EM G G   +  T+ ++I   C  G+M+ A+ F+  MK    E ++  Y  LIR FCD 
Sbjct: 201 NEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDC 260

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
           GE++RG  LF+++      P   TYN LI       K   L  A ++   M++RG  P  
Sbjct: 261 GELDRGKALFDEVLERGDSPCAITYNTLIRGFC---KLGQLKEASEIFEFMIERGVRPNV 317

Query: 456 FTFNRVLNGLLLIGNQGLAKEILRL 480
           +T+  +++GL  +G    A + L L
Sbjct: 318 YTYTGLIDGLCGVGKTKEALQPLNL 342



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 121/266 (45%), Gaps = 4/266 (1%)

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
           A+ V ++ VD G +      N++ K   R+   E A+ F+ +M +    I+ V+ + ++ 
Sbjct: 57  AVSVFQQAVDSGSSLAFAGSNLMAK-LVRSRNHELAFSFYRKMLETDTFINFVSLSGLLE 115

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
            +  + +   A  V   M+  G   +V  +N +++ LC+      A+ +  EM     MP
Sbjct: 116 CYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMP 175

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           +  +YN VIRG C   E+E+ALE    MK   C  ++ T+ ILI  FC AG+++  +   
Sbjct: 176 DVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFL 235

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           ++M       +L  Y  LI          +L     L  E+++RG  P   T+N ++ G 
Sbjct: 236 KEMKFMGLEADLVVYTSLIRGFC---DCGELDRGKALFDEVLERGDSPCAITYNTLIRGF 292

Query: 466 LLIGNQGLAKEILRLQSRCGRLPRQF 491
             +G    A EI       G  P  +
Sbjct: 293 CKLGQLKEASEIFEFMIERGVRPNVY 318



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 56/289 (19%), Positives = 132/289 (45%), Gaps = 4/289 (1%)

Query: 94  SYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGK 153
           SY      S ++  H +    RL     ++ L+  ++ L  G  + T  I+    + AG 
Sbjct: 418 SYTDPDVISYNALIHGLCKENRLHQALDIYDLL--VEKLGAGD-RVTTNILLNSTLKAGD 474

Query: 154 ADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNV 212
            ++A++++  + +    ++ +++  ++D  CK   +  A  L    R  + +  V  YN 
Sbjct: 475 VNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNC 534

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           + +  C     ++A  + +EM      P++ ++NI++ G  +AG I+ A    + M +  
Sbjct: 535 LLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAG 594

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
              D+ TY+ +++ F  +G +  A + FD MV+ G  P     +++++    +   +   
Sbjct: 595 LSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLT 654

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
            + +++V K  + +      V+  +C++       + + R+ DD+ E +
Sbjct: 655 ELVKKLVDKDIVLDKELTCTVMDYMCNSSANMDLAKRLLRVTDDKEERD 703


>gi|225427504|ref|XP_002263624.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Vitis vinifera]
          Length = 709

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 127/450 (28%), Positives = 211/450 (46%), Gaps = 28/450 (6%)

Query: 38  ADPAALASLILTSTDPRT-LTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYH 96
           +D   L   I  + +P + + + L    +  T  LV +I+ ++      A  FF    + 
Sbjct: 234 SDADKLYKAIANNANPESDMEKALDLVGVELTTDLVIEILGKIHFEEKMAFRFFMWAGHQ 293

Query: 97  PTYAHSPSSFDHAIDLAA----RLRDYRTVWTLVHRMKSLSLGPTQ-KTFAIIAERYVSA 151
             Y+H P +++  ID+ +    +++ +R V  ++  MK         +   +I  +Y   
Sbjct: 294 DCYSHEPRAYNEMIDILSSTKYKVKQFRIVCDMLDYMKRNDKKSVPVEVLLMILRKYTE- 352

Query: 152 GKADRAVKIFLSMHEHGCRQ--------SLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF 203
                  K    +H+   ++         +N+ N +LD LCK   VE A  +F+  + K 
Sbjct: 353 -------KHLAHLHKFAKKKKIRVKTQPEINALNLLLDALCKCSLVEDAQAMFRRVKNKV 405

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
           K D  +YN++  GWC V+  ++ + VL+EM++ G  P+  TYN  +  + +AG + EA  
Sbjct: 406 KPDANTYNILFFGWCRVRNPSRGMRVLEEMIEMGHTPDSFTYNTAIDSFCKAGMVTEATE 465

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD---GMVNGGVLPSVATYNAMIQ 320
            F  M+ +   +   T  T       + +  R    F     M+N GVLP V+TY  +I+
Sbjct: 466 LFEFMRTKGSTMSSPTAKTYAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIE 525

Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
            +C    VE A    EEM  KGY P+  TYN  +  LC   + E AL   GRM +  C P
Sbjct: 526 GMCLAGKVEEAYKFLEEMGNKGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVP 585

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAG 440
           +V T+N+LI  F + GE +   E + +M    C  + DTY ++I  +F   K +D   A 
Sbjct: 586 SVHTFNMLISMFFEIGEPDGAFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMED---AC 642

Query: 441 KLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
            LL E+V++G       F+  L  L +IG+
Sbjct: 643 FLLDEVVNKGIKLPYRKFDCFLMQLSMIGD 672



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 108/254 (42%), Gaps = 4/254 (1%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS-- 172
           R+R+      ++  M  +   P   T+    + +  AG    A ++F  M   G   S  
Sbjct: 421 RVRNPSRGMRVLEEMIEMGHTPDSFTYNTAIDSFCKAGMVTEATELFEFMRTKGSTMSSP 480

Query: 173 -LNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVL 230
              ++  ++  L +  + E+ + L K +       DV +Y  +  G CL  +  +A + L
Sbjct: 481 TAKTYAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVEEAYKFL 540

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
           +EM ++G  P++ TYN  L       + EEA   +  M +  C   V T+  ++  F  +
Sbjct: 541 EEMGNKGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLISMFFEI 600

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           GE   A   +  M   G      TY  MI+ L   + +E+A  + +E+V KG       +
Sbjct: 601 GEPDGAFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMEDACFLLDEVVNKGIKLPYRKF 660

Query: 351 NVVIRGLCHTGEME 364
           +  +  L   G+++
Sbjct: 661 DCFLMQLSMIGDLQ 674



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 100/213 (46%), Gaps = 3/213 (1%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRT--VWTLVHRMKSLSLGPTQKTFA 142
           +A   F  +    +   SP++  +AI + A ++  RT   + L+  M +  + P   T+ 
Sbjct: 462 EATELFEFMRTKGSTMSSPTAKTYAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYK 521

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRG 201
            + E    AGK + A K    M   G R  + ++N  LD+LC+ KK E+A  L+ ++   
Sbjct: 522 QVIEGMCLAGKVEEAYKFLEEMGNKGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEA 581

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
                V ++N++ + +  +   + A E   EM  RG   +  TY ++++G F   ++E+A
Sbjct: 582 GCVPSVHTFNMLISMFFEIGEPDGAFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMEDA 641

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
                E+  +  ++    +   +    ++G+++
Sbjct: 642 CFLLDEVVNKGIKLPYRKFDCFLMQLSMIGDLQ 674


>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
          Length = 524

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 173/347 (49%), Gaps = 6/347 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG-CRQSLNSFNTILDLLCKEKKVEKAYN 194
           P   T+  +   + + G+   A+++   M E G       ++ T++   CK  ++E A  
Sbjct: 145 PNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAVK 204

Query: 195 LFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
           +F   + +G+     + YN +  G+C V + + AL+  ++MV RG+   + TYN+++   
Sbjct: 205 VFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHAL 264

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
           F   +  +A+    EM+K     DV TY  +++G+   G  K+A  VF+ M   GV  + 
Sbjct: 265 FMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATA 324

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            TY ++I V  +K  V+    +F   V KG  P+   YN +I   C  G+MERA E +  
Sbjct: 325 VTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAE 384

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           M+     P+  TYN L+R FC  G ++    L ++M      P+L +YN LIS   ++  
Sbjct: 385 MEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGD 444

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
             D L   ++  EM+D+GF P   T+N ++ GL  I     A+ +++
Sbjct: 445 IKDAL---RVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMK 488



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 115/412 (27%), Positives = 188/412 (45%), Gaps = 12/412 (2%)

Query: 79  LWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQ 138
           L+  AL A      LS  P  + SPS     +  +A  R + T   L  ++KSLS+    
Sbjct: 26  LFKSALSADRALCPLSVLPHLSASPSLPHLLLTASAAARPHATSLRLYAQLKSLSVPIPV 85

Query: 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV 198
            +   +     SA     A  +F  ++         +FN +L  LC   K  +A  L   
Sbjct: 86  ASLHPLLSSLPSAP----AFALFADIYRLRLPLCTTTFNIMLRHLCATGKPVRALELL-- 139

Query: 199 FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR-GLNPNLTTYNIVLKGYFRAGQ 257
            R   + + ++YN +  G+C   R   ALEV++EM +R G+ P+  TY  ++ G+ + G+
Sbjct: 140 -RQMPRPNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGR 198

Query: 258 IEEAWRFFLEM-KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
           +E+A + F EM  K +     V Y  ++ G+  VG++  A    + MV  G+  +VATYN
Sbjct: 199 MEDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYN 258

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
            ++  L       +A  V EEM   G+ P+  TYN++I G C  G  ++ALE    M   
Sbjct: 259 LLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQK 318

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
                  TY  LI  F   G+++    LF         P++  YN LI+S        D+
Sbjct: 319 GVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCT---GGDM 375

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             A +++ EM  +   P   T+N ++ G  L+G    A+ ++   ++ G  P
Sbjct: 376 ERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQP 427



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 81/259 (31%), Positives = 143/259 (55%), Gaps = 6/259 (2%)

Query: 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH 167
           HA+ + AR  D    + ++  M+     P   T+ I+   Y   G   +A+++F  M + 
Sbjct: 262 HALFMDARASD---AYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQK 318

Query: 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLFKV-FRGKFKADVISYNVIANGWCLVKRTNKA 226
           G R +  ++ +++ +  ++ +V++   LF V  +   + DV+ YN + N  C      +A
Sbjct: 319 GVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERA 378

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
            E++ EM  + + P+  TYN +++G+   G+++EA     EM KR  + D+V+Y T++ G
Sbjct: 379 YEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISG 438

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
           + + G+IK A  V D M++ G  P++ TYNA+IQ LCK    ++A  + +EMV KG  P+
Sbjct: 439 YSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEMVAKGITPD 498

Query: 347 STTYNVVIRGLCHTGEMER 365
            +TY  +I GL  T E ER
Sbjct: 499 DSTYISLIEGL--TTEDER 515



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 140/295 (47%), Gaps = 1/295 (0%)

Query: 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
           + P+   +  +   Y   GK D A++    M + G   ++ ++N ++  L  + +   AY
Sbjct: 215 VAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHALFMDARASDAY 274

Query: 194 NLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
            + +   +  F  DV +YN++ NG+C      KALEV +EM  +G+     TY  ++  +
Sbjct: 275 AVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVF 334

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
            R GQ++E  R F    K+    DVV Y  +++     G+++RA  +   M    + P  
Sbjct: 335 SRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDD 394

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            TYN +++  C    ++ A  + +EM  +G  P+  +YN +I G    G+++ AL     
Sbjct: 395 MTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDE 454

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           M D    P + TYN LI+  C   + +    L ++M +    P+  TY  LI  +
Sbjct: 455 MMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEMVAKGITPDDSTYISLIEGL 509



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 83/180 (46%), Gaps = 9/180 (5%)

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           T+N M++ LC       A+ +  +M      PN+ TYN VI G C  G ++ ALE +  M
Sbjct: 118 TFNIMLRHLCATGKPVRALELLRQMP----RPNAVTYNTVIAGFCARGRVQAALEVMREM 173

Query: 374 KD-DECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISSMFVRK 431
           ++     P+  TY  LI  +C  G +E  +++F++M   G   P+   YN LI       
Sbjct: 174 RERGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVG 233

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           K D   VA +   +MV RG      T+N +++ L +      A  +L    + G  P  F
Sbjct: 234 KLD---VALQYREDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVF 290


>gi|357440039|ref|XP_003590297.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479345|gb|AES60548.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 661

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 200/397 (50%), Gaps = 14/397 (3%)

Query: 65  LHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWT 124
           +H +  L+++++ R  +    AL  F     H  + HS  S+D  +D+  R++    +  
Sbjct: 82  IHLSENLINRLLFRYKDDWKSALAIFRWAGSHSNFKHSQQSYDMMVDILGRMKAMDKMRE 141

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++  M+  SL  T  T A +  R+V A +   AV+IF  +   G  ++  S N +LD LC
Sbjct: 142 ILEEMRQESL-ITLNTIAKVMRRFVGARQWKDAVRIFDDLQFLGLEKNTESMNVLLDTLC 200

Query: 185 KEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
           KEK VE+A  ++   +     +  ++N++ +GWC ++R  +A   ++EM   G  P + +
Sbjct: 201 KEKFVEQAREIYLELKHYIAPNAHTFNILIHGWCNIRRVEEAHWTIQEMKGYGCRPCVIS 260

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           Y+ +++ Y +    +  +    EM+ + C  +VVTYTTI+       + + A  V + M 
Sbjct: 261 YSTIIQCYCQEQNFDRVYDLLDEMQAQNCSPNVVTYTTIMCALAKAEKFEEALQVVERMN 320

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM-PNSTTYNVVIRGLCHTGEM 363
             G  P    +N++I  L +   +++A  VF+  + K  + PN++TYN +I   C+  + 
Sbjct: 321 AVGCRPDTLFFNSLIYTLGRAGRIDDATHVFKVAMPKASVAPNTSTYNSMISMFCYYAQE 380

Query: 364 ERALEFVGRM-KDDECEPNVQTYNILIRYFCDAGEIERGL-----ELFEKMGSGVCLPNL 417
           ERA   +  M K   C+P++QTY+ LI+      EI+  L     ++  K   G+   +L
Sbjct: 381 ERAFGILKEMEKSGLCKPDIQTYHPLIKSCFKMREIDTWLNDILNDMVNKYHIGL---DL 437

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
            TY +LI  ++   ++D    A  L  EM D+  +PR
Sbjct: 438 STYTLLIHGLY---RADRCKWAFDLFEEMADQDIVPR 471



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 111/227 (48%), Gaps = 5/227 (2%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S+   I    + +++  V+ L+  M++ +  P   T+  I      A K + A+++   M
Sbjct: 260 SYSTIIQCYCQEQNFDRVYDLLDEMQAQNCSPNVVTYTTIMCALAKAEKFEEALQVVERM 319

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKR 222
           +  GCR     FN+++  L +  +++ A ++FKV   +     +  +YN + + +C   +
Sbjct: 320 NAVGCRPDTLFFNSLIYTLGRAGRIDDATHVFKVAMPKASVAPNTSTYNSMISMFCYYAQ 379

Query: 223 TNKALEVLKEMVDRGL-NPNLTTYNIVLKGYFRAGQIEEAWRFFLE--MKKRKCEIDVVT 279
             +A  +LKEM   GL  P++ TY+ ++K  F+  +I+      L   + K    +D+ T
Sbjct: 380 EERAFGILKEMEKSGLCKPDIQTYHPLIKSCFKMREIDTWLNDILNDMVNKYHIGLDLST 439

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           YT ++HG       K A ++F+ M +  ++P   T   ++  + +K+
Sbjct: 440 YTLLIHGLYRADRCKWAFDLFEEMADQDIVPRYKTCRLLLDEVKQKN 486


>gi|449438586|ref|XP_004137069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/337 (31%), Positives = 174/337 (51%), Gaps = 5/337 (1%)

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIA 214
           ++++  F  M   G   S  SFN  LDLL K   +++ +  F  + G+ + DV S+ +  
Sbjct: 55  EQSLDSFKLMVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGRTQFDVYSFGITI 114

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
             +C     +K  E+L +M   G++PN+  Y I+++   R G I++A   F  M      
Sbjct: 115 KAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLA 174

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
            +   YT +++GF   G  K    ++  M   GVLP++ TYN++I   C+   +  A  V
Sbjct: 175 ANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKV 234

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
           F+E+  +G   N+ TYN++I GLC  G++ +A   + RMK     P  +T+N+L+   C+
Sbjct: 235 FDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCN 294

Query: 395 AGEIERGLELFEKMG-SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
            G++++ L   EK+   G+C P L TYNILIS      K  +  V  +L+ EM DRG  P
Sbjct: 295 TGQLDKALSYLEKLKLIGLC-PTLVTYNILISGF---SKVGNSSVVSELVREMEDRGISP 350

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
            K T+  ++N  +   +   A E+  L  R G +P Q
Sbjct: 351 SKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQ 387



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 172/371 (46%), Gaps = 13/371 (3%)

Query: 100 AHSPSSF--DHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQ---KTFAIIAERYVSAGKA 154
            HSPSSF  ++A+DL A+  +    W          LG TQ    +F I  + +   G  
Sbjct: 68  GHSPSSFSFNNALDLLAKSGNLDRTWGFFTEY----LGRTQFDVYSFGITIKAFCENGNV 123

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVI 213
            +  ++   M   G   ++  +  +++  C+   +++A  +F         A+   Y ++
Sbjct: 124 SKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIM 183

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
            NG+          E+ ++M   G+ PNL TYN ++  Y R G++  A++ F E+ KR  
Sbjct: 184 INGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGV 243

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
             + VTY  ++ G    G++ +A  + + M    + P+  T+N ++  LC    ++ A+ 
Sbjct: 244 ACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALS 303

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
             E++   G  P   TYN++I G    G      E V  M+D    P+  TY IL+  F 
Sbjct: 304 YLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFV 363

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
            + +IE+  E+F  M     +P+  TY +LI  + ++    +++ A KL   MV+    P
Sbjct: 364 RSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIK---GNMVEASKLYKSMVEMHLQP 420

Query: 454 RKFTFNRVLNG 464
               +N ++NG
Sbjct: 421 NDVIYNTMING 431



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 171/367 (46%), Gaps = 6/367 (1%)

Query: 90  FNILSYHPTYAHSPSSFDHAIDLAARLR--DYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
           F +L+   T   SP+ F + I + A  R  D      +  RM  L L   Q  + I+   
Sbjct: 127 FELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMING 186

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKAD 206
           +   G      +++  M   G   +L ++N+++   C++ K+  A+ +F ++ +     +
Sbjct: 187 FFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACN 246

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
            ++YN++  G C   + +KA  +L+ M    +NP   T+N+++ G    GQ+++A  +  
Sbjct: 247 AVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLE 306

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           ++K       +VTY  ++ GF  VG       +   M + G+ PS  TY  ++    + D
Sbjct: 307 KLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSD 366

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            +E A  +F  M   G +P+  TY V+I GLC  G M  A +    M +   +PN   YN
Sbjct: 367 DIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYN 426

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            +I  +C      + L+  E+M      PN+ +Y   IS++ +  K    + A +LL EM
Sbjct: 427 TMINGYCKECNSYKALKFLEEMVKNGVTPNVASY---ISTIQILCKDGKSIEAKRLLKEM 483

Query: 447 VDRGFMP 453
            + G  P
Sbjct: 484 TEAGLKP 490



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 87/180 (48%), Gaps = 12/180 (6%)

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA----LEFVG 371
           +A+I    +   +E ++  F+ MV KG+ P+S ++N  +  L  +G ++R      E++G
Sbjct: 42  DAVINASFQSQLLEQSLDSFKLMVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLG 101

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
           R + D     V ++ I I+ FC+ G + +G EL  +M +    PN+  Y ILI +     
Sbjct: 102 RTQFD-----VYSFGITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACC--- 153

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           ++ D+  A  +   M D G    ++ +  ++NG    G +    E+ +     G LP  +
Sbjct: 154 RNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLY 213


>gi|147782978|emb|CAN70810.1| hypothetical protein VITISV_034914 [Vitis vinifera]
          Length = 708

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 126/450 (28%), Positives = 211/450 (46%), Gaps = 28/450 (6%)

Query: 38  ADPAALASLILTSTDPRT-LTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYH 96
           +D   L   I  + +P + + + L    +  T  LV +I+ ++      A  FF    + 
Sbjct: 207 SDADKLYKAIANNANPESDMEKALDLVGVELTTDLVIEILGKIHFEEKMAFRFFMWAGHQ 266

Query: 97  PTYAHSPSSFDHAIDLAA----RLRDYRTVWTLVHRMKSLSLGPTQ-KTFAIIAERYVSA 151
             Y+H P +++  ID+ +    +++ +R V  ++  MK         +   +I  +Y   
Sbjct: 267 DCYSHEPRAYNEMIDILSSTKYKVKQFRIVCDMLDYMKRNDKKSVPVEVLLMILRKYTE- 325

Query: 152 GKADRAVKIFLSMHEHGCRQ--------SLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF 203
                  K    +H+   ++         +N+ N +LD LCK   VE A  +F+  + K 
Sbjct: 326 -------KHLAHLHKFAKKKKIRVKTQPEINALNLLLDALCKCSLVEDAQAMFRRVKNKV 378

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
           K D  +YN++  GWC V+  ++ + VL+EM++ G  P+  TYN  +  + +AG + EA  
Sbjct: 379 KPDANTYNILFFGWCRVRNPSRGMRVLEEMIEMGHTPDSFTYNTAIDSFCKAGMVTEATE 438

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD---GMVNGGVLPSVATYNAMIQ 320
            F  M+ +   +   T  T       + +  R    F     M+N GVLP V+TY  +I+
Sbjct: 439 LFEFMRTKGSTMSSPTAKTYAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIE 498

Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
            +C    VE A    EEM  KGY P+  TYN  +  LC   + E AL   GRM +  C P
Sbjct: 499 GMCLAGKVEEAYKFLEEMGNKGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVP 558

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAG 440
           +V T+N+LI  F + GE +   E + +M    C  + DTY ++I  +F   K +D   A 
Sbjct: 559 SVHTFNMLISMFFEIGEPDGAFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMED---AC 615

Query: 441 KLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
            LL E++++G       F+  L  L +IG+
Sbjct: 616 FLLDEVINKGIKLPYRKFDCFLMQLSMIGD 645



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 108/254 (42%), Gaps = 4/254 (1%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS-- 172
           R+R+      ++  M  +   P   T+    + +  AG    A ++F  M   G   S  
Sbjct: 394 RVRNPSRGMRVLEEMIEMGHTPDSFTYNTAIDSFCKAGMVTEATELFEFMRTKGSTMSSP 453

Query: 173 -LNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVL 230
              ++  ++  L +  + E+ + L K +       DV +Y  +  G CL  +  +A + L
Sbjct: 454 TAKTYAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVEEAYKFL 513

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
           +EM ++G  P++ TYN  L       + EEA   +  M +  C   V T+  ++  F  +
Sbjct: 514 EEMGNKGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLISMFFEI 573

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           GE   A   +  M   G      TY  MI+ L   + +E+A  + +E++ KG       +
Sbjct: 574 GEPDGAFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMEDACFLLDEVINKGIKLPYRKF 633

Query: 351 NVVIRGLCHTGEME 364
           +  +  L   G+++
Sbjct: 634 DCFLMQLSMIGDLQ 647



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 100/213 (46%), Gaps = 3/213 (1%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRT--VWTLVHRMKSLSLGPTQKTFA 142
           +A   F  +    +   SP++  +AI + A ++  RT   + L+  M +  + P   T+ 
Sbjct: 435 EATELFEFMRTKGSTMSSPTAKTYAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYK 494

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRG 201
            + E    AGK + A K    M   G R  + ++N  LD+LC+ KK E+A  L+ ++   
Sbjct: 495 QVIEGMCLAGKVEEAYKFLEEMGNKGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEA 554

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
                V ++N++ + +  +   + A E   EM  RG   +  TY ++++G F   ++E+A
Sbjct: 555 GCVPSVHTFNMLISMFFEIGEPDGAFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMEDA 614

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
                E+  +  ++    +   +    ++G+++
Sbjct: 615 CFLLDEVINKGIKLPYRKFDCFLMQLSMIGDLQ 647


>gi|255548471|ref|XP_002515292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545772|gb|EEF47276.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 104/424 (24%), Positives = 207/424 (48%), Gaps = 4/424 (0%)

Query: 54  RTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLA 113
           R +   L    ++ +  LV  +++R  +    A  FF        + H   +++  + + 
Sbjct: 80  RNMEAVLDECGINLSHDLVIDVLERFCHARKPAFRFFCWAGEKQGFEHDSRTYNSMMSIL 139

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
           A+ R + TV +++  M    +  T  TF+I    + +A +  +AV +F  M ++  +  +
Sbjct: 140 AKTRQFETVVSMLEEMGGKGV-LTMDTFSIAMRAFAAAKERKKAVAMFELMKKYNYKVGV 198

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
            + N +LD L + K  ++A  LF+  +G+F  ++ +Y V+ NGWC VK   +A  V  EM
Sbjct: 199 ETINHLLDSLGRAKLGKEAQALFENLKGRFTPNLRTYTVLLNGWCKVKNLMEAGSVWNEM 258

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           +D+G  P++  +NI+L+G  R+ Q  +A + F+ MK +    DV +YT ++       ++
Sbjct: 259 IDKGFKPDIVAHNIMLEGLLRSKQRSDAIKLFMVMKAKGPSPDVRSYTILIRYLCRQSKM 318

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           + A   F  M++ G  P  A Y  +I     +  ++    + +EM  +G  P+  TYN +
Sbjct: 319 EEAVEYFQEMIDSGCKPDAAVYTCLITGFGNRKRMDMVYDLLKEMKEEGCPPDGLTYNAL 378

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           I+ +      + A     +M     EP + TYN++++ +      E G  ++++M     
Sbjct: 379 IKLMTRLKMPDDAARIYKKMTQSGIEPTIHTYNMIMKSYFQTRNYEMGRAVWDEMSRKGF 438

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGL 473
            P+ ++Y +LI  +  + +S +   A K L EM+++G    +  +N+    L   GN  +
Sbjct: 439 CPDDNSYTVLIGGLISQGRSGE---ACKYLEEMLEKGMKAPQLDYNKFGADLSRGGNPDI 495

Query: 474 AKEI 477
            +E+
Sbjct: 496 LEEL 499



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 111/259 (42%), Gaps = 10/259 (3%)

Query: 121 TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180
           +VW   + M      P      I+ E  + + +   A+K+F+ M   G    + S+  ++
Sbjct: 253 SVW---NEMIDKGFKPDIVAHNIMLEGLLRSKQRSDAIKLFMVMKAKGPSPDVRSYTILI 309

Query: 181 DLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
             LC++ K+E+A   F+ +     K D   Y  +  G+   KR +   ++LKEM + G  
Sbjct: 310 RYLCRQSKMEEAVEYFQEMIDSGCKPDAAVYTCLITGFGNRKRMDMVYDLLKEMKEEGCP 369

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           P+  TYN ++K   R    ++A R + +M +   E  + TY  I+  +      +  R V
Sbjct: 370 PDGLTYNALIKLMTRLKMPDDAARIYKKMTQSGIEPTIHTYNMIMKSYFQTRNYEMGRAV 429

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
           +D M   G  P   +Y  +I  L  +     A    EEM+ KG       YN     L  
Sbjct: 430 WDEMSRKGFCPDDNSYTVLIGGLISQGRSGEACKYLEEMLEKGMKAPQLDYNKFGADLSR 489

Query: 360 TG------EMERALEFVGR 372
            G      E+ + L+F G+
Sbjct: 490 GGNPDILEELAQRLKFSGK 508


>gi|297807523|ref|XP_002871645.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317482|gb|EFH47904.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 524

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 110/408 (26%), Positives = 193/408 (47%), Gaps = 9/408 (2%)

Query: 51  TDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAI 110
           +D + L   L    +  + +LV +I+ ++ N    A  FF        Y  S   +   I
Sbjct: 58  SDRKELRNKLEECDVKPSNELVVEILSQVRNDWETAFTFFVWAGKQQGYVRSVREYHSMI 117

Query: 111 DLAARLRDYRTVWTLVHRMKSLSLG-PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
            +  ++R + T WTL+  M+  S      +T  I+  +Y +     +A+  F +      
Sbjct: 118 SILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKYCAVHDVGKAINTFHAYKRFKL 177

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWC-LVKRTNKALE 228
              ++ F ++L  LC+ K V  A +L    +  +  D  S+N++ NGWC ++    +A  
Sbjct: 178 EMGIDDFQSLLSALCRYKNVSDAEHLIFCNKDTYPFDAKSFNIVLNGWCNVIGSPREAER 237

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           V  EM + G+  ++ +Y+ ++  Y + G + +  + F  MKK   E D   Y  ++H   
Sbjct: 238 VWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKESIEPDRKVYNAVIHALA 297

Query: 289 VVGEIKRARNVFDGM-VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
               +  ARN+   M    G+ P+V TYN++I+ LCK    E A  VF+EM+ KG  P  
Sbjct: 298 KASFVSEARNLMKTMEEEKGMEPNVVTYNSLIKPLCKARKTEEAKQVFDEMLEKGLFPTI 357

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
            TY+  +R +  TG  E   E + +M+   C+P V TY +LIR  C   + +  L L+ +
Sbjct: 358 RTYHAFMR-ILRTG--EEVFELLAKMRKMGCQPTVDTYIMLIRKLCRWRDFDNVLLLWNE 414

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
           M      P+L +Y ++I  +F+  K ++   A     EM ++G  P +
Sbjct: 415 MKEKGVGPDLSSYIVMIHGLFLNGKIEE---AYGYYKEMKEKGMRPNE 459


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 171/344 (49%), Gaps = 4/344 (1%)

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFK 204
           E Y    + D A K+ + M E GC  +  ++N ++  LC+   VE+A+   K        
Sbjct: 230 EAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLV 289

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
            D  +Y  + NG C  +R+N+A  +L EM    L PN+  Y  ++ G+ R G  +EA++ 
Sbjct: 290 PDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKM 349

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
             EM     + + +TY  +V G   +G++ RA  +   MV     P   TYN +I+   +
Sbjct: 350 IKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFR 409

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
             S ++A  +  EM   G  PN  TY+++I GLC +GE E+A + +  M     +PN   
Sbjct: 410 HHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFV 469

Query: 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLI 444
           Y  LI  +C  G +    E+F+KM     LP+L  YN LI   F   K   +  + K   
Sbjct: 470 YAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLI---FGLSKVGRVEESTKYFA 526

Query: 445 EMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           +M +RG +P +FT++ +++G L  G+   A+++++     G  P
Sbjct: 527 QMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKP 570



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 170/347 (48%), Gaps = 4/347 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+ +M   S  P   T+ +I E +        A ++   M   G   ++ +++ ++  LC
Sbjct: 384 LLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLC 443

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           +  + EKA +L +    K  K +   Y  + +G+C     + A E+  +M    + P+L 
Sbjct: 444 QSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLY 503

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            YN ++ G  + G++EE+ ++F +M++R    +  TY+ ++HG+   G+++ A  +   M
Sbjct: 504 CYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRM 563

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           ++ G+ P+   Y  +++   K D +E     F+ M+ +G M ++  Y ++I  L  +G M
Sbjct: 564 LDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNM 623

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           E A   +  ++ +   P+V  Y+ LI   C   + E+   + ++M      PN+  YN L
Sbjct: 624 EAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNAL 683

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
           I  +    KS D+  A  +   ++ +G +P   T+  +++G   +G+
Sbjct: 684 IDGLC---KSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGD 727



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 175/361 (48%), Gaps = 4/361 (1%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M+   L P   T+  +      + +++ A  +   M     + ++  +  ++D   +E  
Sbjct: 283 MEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGN 342

Query: 189 VEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
            ++A+ + K +     + + I+Y+ +  G C + + ++A  +LK+MV     P+  TYN+
Sbjct: 343 ADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNL 402

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           +++G+FR    ++A+R   EM+      +V TY+ ++HG    GE ++A ++ + M   G
Sbjct: 403 IIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKG 462

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           + P+   Y  +I   C++ +V  A  +F++M     +P+   YN +I GL   G +E + 
Sbjct: 463 LKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEEST 522

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           ++  +M++    PN  TY+ LI  +   G++E   +L ++M      PN   Y  L+ S 
Sbjct: 523 KYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESY 582

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
           F   KSDD+         M+D+G M     +  +++ L   GN   A  +L    + G +
Sbjct: 583 F---KSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSV 639

Query: 488 P 488
           P
Sbjct: 640 P 640



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 101/394 (25%), Positives = 175/394 (44%), Gaps = 10/394 (2%)

Query: 90  FNILSYHPTYAHSPSSFDHAIDLAARLR--DYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
           F +LS       SP+ + ++I +    +  +      L+  M +  L P    +A +   
Sbjct: 417 FRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISG 476

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKAD 206
           Y   G    A +IF  M +      L  +N+++  L K  +VE++   F   + +    +
Sbjct: 477 YCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPN 536

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
             +Y+ + +G+        A ++++ M+D GL PN   Y  +L+ YF++  IE+    F 
Sbjct: 537 EFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFK 596

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
            M  +   +D   Y  ++H     G ++ A  V  G+   G +P V  Y+++I  LCK  
Sbjct: 597 SMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTA 656

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
             E A  + +EM  KG  PN   YN +I GLC +G++  A      +      PN  TY 
Sbjct: 657 DREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYT 716

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            LI   C  G+I     L+ +M +    P+   Y++L +       + DL  A  L+ EM
Sbjct: 717 SLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGC---SSAGDLEQAMFLIEEM 773

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
             RG      +FN +++G      +G  +E L+L
Sbjct: 774 FLRGHASIS-SFNNLVDGFC---KRGKMQETLKL 803



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 114/244 (46%), Gaps = 3/244 (1%)

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
            L+ Y +  + + A +  +EM++R C ++ VTY  ++ G    G ++ A      M + G
Sbjct: 228 ALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYG 287

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           ++P   TY A+I  LCK      A  + +EM      PN   Y  +I G    G  + A 
Sbjct: 288 LVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAF 347

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           + +  M     +PN  TY+ L+R  C  G+++R   L ++M      P+  TYN++I   
Sbjct: 348 KMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGH 407

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
           F      D   A +LL EM + G  P  +T++ +++GL   G    A ++L   +  G  
Sbjct: 408 FRHHSKKD---AFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLK 464

Query: 488 PRQF 491
           P  F
Sbjct: 465 PNAF 468



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/389 (21%), Positives = 155/389 (39%), Gaps = 62/389 (15%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177
           D  +   LV RM    L P    +  + E Y  +   ++    F SM + G       + 
Sbjct: 552 DLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYG 611

Query: 178 TILDLLCKEKKVEKAYNLFKVFRGKFK----ADVISYNVIANGWCLVKRTNKALEVLKEM 233
            ++  L     +E A   F+V  G  K     DV  Y+ + +G C      KA  +L EM
Sbjct: 612 ILIHNLSSSGNMEAA---FRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEM 668

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
             +G++PN+  YN ++ G  ++G I  A   F  +  +    + VTYT+++ G   VG+I
Sbjct: 669 SKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDI 728

Query: 294 KRARNVFDGMVNGGVLP----------------------------------SVATYNAMI 319
             A  +++ M+  G+ P                                  S++++N ++
Sbjct: 729 SNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLV 788

Query: 320 QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
              CK+  ++  + +   ++G+G +PN+ T   +I GL   G++         ++    E
Sbjct: 789 DGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSE 848

Query: 380 PNVQTYNIL------------------IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
              + ++ L                  IR  C  G +++ L L + + +        +Y 
Sbjct: 849 SAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYL 908

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRG 450
            ++ ++  + K  + L    LL EM  RG
Sbjct: 909 AIVDNLCRKGKLSEAL---NLLKEMDKRG 934



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 79/174 (45%), Gaps = 3/174 (1%)

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           + + ++  CK    + A  V  EM  +G   N+ TYNV+I GLC +G +E A  F   M+
Sbjct: 225 HGSALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDME 284

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
           D    P+  TY  LI   C +        L ++M      PN+  Y  LI        +D
Sbjct: 285 DYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNAD 344

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           +   A K++ EMV  G  P K T++ ++ GL  +G    A  +L+   R    P
Sbjct: 345 E---AFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRP 395



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/268 (19%), Positives = 116/268 (43%), Gaps = 17/268 (6%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           ++  ID   +  D      + + + +  L P   T+  + +     G    A  ++  M 
Sbjct: 680 YNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEML 739

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNK 225
             G       ++ +         +E+A  L +    +  A + S+N + +G+C   +  +
Sbjct: 740 ATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQE 799

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
            L++L  ++ RGL PN  T   ++ G   AG++ E    F+E++++  E     ++++  
Sbjct: 800 TLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSL-- 857

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
                         F  M+N G +P +   + MI+  CK+ +++ A+++ + +V K    
Sbjct: 858 --------------FMDMINQGKIP-LDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPM 902

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRM 373
             ++Y  ++  LC  G++  AL  +  M
Sbjct: 903 GCSSYLAIVDNLCRKGKLSEALNLLKEM 930



 Score = 41.6 bits (96), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 68/171 (39%), Gaps = 22/171 (12%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           S SSF++ +D   +    +    L+H +    L P   T   I      AGK      IF
Sbjct: 780 SISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIF 839

Query: 162 LSMHEHGCRQSLNSFNTI-LDLL-----------------CKEKKVEKAYNLFKVFRGKF 203
           + + +     +   F+++ +D++                 CKE  ++KA  L  V   K 
Sbjct: 840 VELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKS 899

Query: 204 KA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
                 SY  I +  C   + ++AL +LKEM  RG   NL    + L G F
Sbjct: 900 APMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRG---NLQPTLVALLGIF 947


>gi|414590917|tpg|DAA41488.1| TPA: hypothetical protein ZEAMMB73_494908 [Zea mays]
          Length = 601

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 97/293 (33%), Positives = 156/293 (53%), Gaps = 6/293 (2%)

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           S+  ++  LC  ++ ++A  L +  +    +ADV++Y  +  G C     + ALE+L EM
Sbjct: 117 SYTMVMRGLCASRRTDEAVALLRSMQASGVRADVVTYGTLIRGLCDAAELDGALELLGEM 176

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
              G++PN+  Y+ +L+GY R+G+ ++  + F EM +   E DV+ +T  +      G I
Sbjct: 177 CGSGVHPNVIVYSCLLRGYCRSGRWQDVSKVFEEMSRLGVEPDVIMFTGFIDDLCKKGRI 236

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
            +A  V D MV  G+ P+V TYN +I  LCK+ SV  A+ +  EM  KG  P+  TYN +
Sbjct: 237 GKAVKVKDIMVQRGLEPNVVTYNVLINCLCKEGSVREALALRNEMDDKGVAPDVVTYNTL 296

Query: 354 IRGLCHTGEMERALEFVGRM--KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
           I GL    EM+ A+  +  M   D   EP+V T+N +I   C  G + + + + E M   
Sbjct: 297 IAGLSGVLEMDGAMGLLEEMIQGDTLVEPDVVTFNSVIHGLCKIGRMRQAISVREMMAER 356

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
            C+ NL TYN LI       K +   +A  L+ E++  G  P  FT++ ++NG
Sbjct: 357 GCMCNLVTYNYLIGGFLRVHKVN---MAMNLMSELISSGLEPDSFTYSILING 406



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 180/368 (48%), Gaps = 9/368 (2%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M    + P    ++ +   Y  +G+     K+F  M   G    +  F   +D LC
Sbjct: 172 LLGEMCGSGVHPNVIVYSCLLRGYCRSGRWQDVSKVFEEMSRLGVEPDVIMFTGFIDDLC 231

Query: 185 KEKKVEKAYNL--FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           K+ ++ KA  +    V RG  + +V++YNV+ N  C      +AL +  EM D+G+ P++
Sbjct: 232 KKGRIGKAVKVKDIMVQRG-LEPNVVTYNVLINCLCKEGSVREALALRNEMDDKGVAPDV 290

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRK--CEIDVVTYTTIVHGFGVVGEIKRARNVF 300
            TYN ++ G     +++ A     EM +     E DVVT+ +++HG   +G +++A +V 
Sbjct: 291 VTYNTLIAGLSGVLEMDGAMGLLEEMIQGDTLVEPDVVTFNSVIHGLCKIGRMRQAISVR 350

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           + M   G + ++ TYN +I    +   V  A+ +  E++  G  P+S TY+++I G    
Sbjct: 351 EMMAERGCMCNLVTYNYLIGGFLRVHKVNMAMNLMSELISSGLEPDSFTYSILINGFSKL 410

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
            E++RA  F+  M        +  Y  L+   C  G +E+ + LF +M    C  +   Y
Sbjct: 411 WEVDRAEMFLRTMTQRGIRAELFHYIPLLAALCQLGMMEQAMVLFNEMDMN-CGLDAVAY 469

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           + +   M+   KS D+  A +LL +M+D G  P   T++ ++N    +G+   A+ +L+ 
Sbjct: 470 STM---MYGACKSGDIKAAKQLLQDMLDEGLAPDAVTYSILINMFAKLGDLEEAERVLKQ 526

Query: 481 QSRCGRLP 488
            +  G +P
Sbjct: 527 MAASGFVP 534



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 169/349 (48%), Gaps = 7/349 (2%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           ++ V  +   M  L + P    F    +     G+  +AVK+   M + G   ++ ++N 
Sbjct: 201 WQDVSKVFEEMSRLGVEPDVIMFTGFIDDLCKKGRIGKAVKVKDIMVQRGLEPNVVTYNV 260

Query: 179 ILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMV--D 235
           +++ LCKE  V +A  L      K  A DV++YN +  G   V   + A+ +L+EM+  D
Sbjct: 261 LINCLCKEGSVREALALRNEMDDKGVAPDVVTYNTLIAGLSGVLEMDGAMGLLEEMIQGD 320

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
             + P++ T+N V+ G  + G++ +A      M +R C  ++VTY  ++ GF  V ++  
Sbjct: 321 TLVEPDVVTFNSVIHGLCKIGRMRQAISVREMMAERGCMCNLVTYNYLIGGFLRVHKVNM 380

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
           A N+   +++ G+ P   TY+ +I    K   V+ A +    M  +G       Y  ++ 
Sbjct: 381 AMNLMSELISSGLEPDSFTYSILINGFSKLWEVDRAEMFLRTMTQRGIRAELFHYIPLLA 440

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
            LC  G ME+A+     M D  C  +   Y+ ++   C +G+I+   +L + M      P
Sbjct: 441 ALCQLGMMEQAMVLFNEM-DMNCGLDAVAYSTMMYGACKSGDIKAAKQLLQDMLDEGLAP 499

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           +  TY+ILI +MF   K  DL  A ++L +M   GF+P    F+ ++ G
Sbjct: 500 DAVTYSILI-NMFA--KLGDLEEAERVLKQMAASGFVPDVAVFDSLIKG 545



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 152/324 (46%), Gaps = 10/324 (3%)

Query: 175 SFNTILDLLCKEK-KVEKAYNLFKVFRGKF----KADVISYNVIANGWCLVKRTNKALEV 229
           S+N +L  LC+    + +A +L      +     + + +SY ++  G C  +RT++A+ +
Sbjct: 78  SYNIVLAALCRRGGDLRQALSLLADMSREAHPAARPNAVSYTMVMRGLCASRRTDEAVAL 137

Query: 230 LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289
           L+ M   G+  ++ TY  +++G   A +++ A     EM       +V+ Y+ ++ G+  
Sbjct: 138 LRSMQASGVRADVVTYGTLIRGLCDAAELDGALELLGEMCGSGVHPNVIVYSCLLRGYCR 197

Query: 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
            G  +    VF+ M   GV P V  +   I  LCKK  +  A+ V + MV +G  PN  T
Sbjct: 198 SGRWQDVSKVFEEMSRLGVEPDVIMFTGFIDDLCKKGRIGKAVKVKDIMVQRGLEPNVVT 257

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
           YNV+I  LC  G +  AL     M D    P+V TYN LI       E++  + L E+M 
Sbjct: 258 YNVLINCLCKEGSVREALALRNEMDDKGVAPDVVTYNTLIAGLSGVLEMDGAMGLLEEMI 317

Query: 410 SGVCL--PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467
            G  L  P++ T+N +I  +    +    +   ++   M +RG M    T+N ++ G L 
Sbjct: 318 QGDTLVEPDVVTFNSVIHGLCKIGRMRQAISVREM---MAERGCMCNLVTYNYLIGGFLR 374

Query: 468 IGNQGLAKEILRLQSRCGRLPRQF 491
           +    +A  ++      G  P  F
Sbjct: 375 VHKVNMAMNLMSELISSGLEPDSF 398



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 120/240 (50%), Gaps = 2/240 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   TF  +       G+  +A+ +   M E GC  +L ++N ++    +  KV  A NL
Sbjct: 325 PDVVTFNSVIHGLCKIGRMRQAISVREMMAERGCMCNLVTYNYLIGGFLRVHKVNMAMNL 384

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             ++     + D  +Y+++ NG+  +   ++A   L+ M  RG+   L  Y  +L    +
Sbjct: 385 MSELISSGLEPDSFTYSILINGFSKLWEVDRAEMFLRTMTQRGIRAELFHYIPLLAALCQ 444

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G +E+A   F EM    C +D V Y+T+++G    G+IK A+ +   M++ G+ P   T
Sbjct: 445 LGMMEQAMVLFNEMDM-NCGLDAVAYSTMMYGACKSGDIKAAKQLLQDMLDEGLAPDAVT 503

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y+ +I +  K   +E A  V ++M   G++P+   ++ +I+G    G++ + L+ +  M+
Sbjct: 504 YSILINMFAKLGDLEEAERVLKQMAASGFVPDVAVFDSLIKGYSAEGQINKILDLIHEMR 563



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 90/191 (47%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++++ I    R+        L+  + S  L P   T++I+   +    + DRA     +M
Sbjct: 364 TYNYLIGGFLRVHKVNMAMNLMSELISSGLEPDSFTYSILINGFSKLWEVDRAEMFLRTM 423

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTN 224
            + G R  L  +  +L  LC+   +E+A  LF         D ++Y+ +  G C      
Sbjct: 424 TQRGIRAELFHYIPLLAALCQLGMMEQAMVLFNEMDMNCGLDAVAYSTMMYGACKSGDIK 483

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
            A ++L++M+D GL P+  TY+I++  + + G +EEA R   +M       DV  + +++
Sbjct: 484 AAKQLLQDMLDEGLAPDAVTYSILINMFAKLGDLEEAERVLKQMAASGFVPDVAVFDSLI 543

Query: 285 HGFGVVGEIKR 295
            G+   G+I +
Sbjct: 544 KGYSAEGQINK 554



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 7/147 (4%)

Query: 346 NSTTYNVVIRGLC-HTGEMERALEFVGRMKDD---ECEPNVQTYNILIRYFCDAGEIERG 401
           ++ +YN+V+  LC   G++ +AL  +  M  +      PN  +Y +++R  C +   +  
Sbjct: 75  DAVSYNIVLAALCRRGGDLRQALSLLADMSREAHPAARPNAVSYTMVMRGLCASRRTDEA 134

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
           + L   M +     ++ TY  LI  +    + D  L   +LL EM   G  P    ++ +
Sbjct: 135 VALLRSMQASGVRADVVTYGTLIRGLCDAAELDGAL---ELLGEMCGSGVHPNVIVYSCL 191

Query: 462 LNGLLLIGNQGLAKEILRLQSRCGRLP 488
           L G    G      ++    SR G  P
Sbjct: 192 LRGYCRSGRWQDVSKVFEEMSRLGVEP 218


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 197/389 (50%), Gaps = 33/389 (8%)

Query: 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK 197
           Q ++  +       G+   A+ +   +  +  + ++  +NTI+D +CK K V +A++LF 
Sbjct: 190 QISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFS 249

Query: 198 VFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256
               K    DV++Y+ + +G+C++ + N A+++  +M+   + P++ T+NI++  + + G
Sbjct: 250 EMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDG 309

Query: 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
           +++E    F  M K+  + + VTY +++ G+ +V E+ +A+++F+ M  GGV P + +Y+
Sbjct: 310 KMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYS 369

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
            MI   CK    + A+ +F+EM  K  +P+  TY+ +I GL  +G +  AL+ V +M D 
Sbjct: 370 IMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDR 429

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD- 435
              P ++TYN ++   C   ++++ + L  K+      PN+ TY+ILI  +    K +D 
Sbjct: 430 GVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDA 489

Query: 436 ------LLVAG-------------------------KLLIEMVDRGFMPRKFTFNRVLNG 464
                 LLV G                          LL +M D G +P   T+  ++  
Sbjct: 490 RKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILS 549

Query: 465 LLLIGNQGLAKEILRLQSRCGRLPRQFKL 493
           L       +A+++LR     G  PRQ  +
Sbjct: 550 LFKKDENDMAEKLLREMIARGVRPRQIAI 578



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 119/441 (26%), Positives = 202/441 (45%), Gaps = 45/441 (10%)

Query: 63  PSLHWTPQLVDQIIKRLWNHALKALHF---------FNILSYHPTYA--HSPSSFDHAID 111
           P  H+ P+             LK  HF          N +SY  T    HS +  D A+ 
Sbjct: 18  PDSHFVPKKFQSF------QFLKNTHFNFIPYSSSKINFISYSSTSTTFHSNNDVDDAVS 71

Query: 112 LAARL----------------------RDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149
           L  RL                      + Y TV  L  +M+   + P      I+   + 
Sbjct: 72  LFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFC 131

Query: 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF--KVFRGKFKADV 207
             G    A  +F  + + G      +F T++  LC + ++++A+ LF  KV    F  D 
Sbjct: 132 QLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAF-LFHDKVVALGFHFDQ 190

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           ISY  + +G C V  T  AL++L+ +    + PN+  YN ++    +   + EA+  F E
Sbjct: 191 ISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSE 250

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M  +    DVVTY+ ++ GF ++G++  A ++F+ M+   + P V T+N ++   CK   
Sbjct: 251 MISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGK 310

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
           ++    VF+ M+ +G  PN  TYN ++ G C   E+ +A      M      P++Q+Y+I
Sbjct: 311 MKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSI 370

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           +I  FC   + +  + LF++M     +P++ TY+ LI  +    KS  +  A +L+ +M 
Sbjct: 371 MINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGL---SKSGRISYALQLVDQMH 427

Query: 448 DRGFMPRKFTFNRVLNGLLLI 468
           DRG  P   T+N +L+ L  I
Sbjct: 428 DRGVPPTIRTYNSILDALCKI 448



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 114/241 (47%), Gaps = 34/241 (14%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S+   I+   +++ +     L   M   ++ P   T++ + +    +G+   A+++   M
Sbjct: 367 SYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQM 426

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTN 224
           H+ G   ++ ++N+ILD LCK  +V+KA                                
Sbjct: 427 HDRGVPPTIRTYNSILDALCKIHQVDKA-------------------------------- 454

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
             + +L ++ D+G+ PN+ TY+I++KG  ++G++E+A + F  +  +   ++V TYT ++
Sbjct: 455 --IALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMI 512

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            GF V G    A  +   M + G +P   TY  +I  L KKD  + A  +  EM+ +G  
Sbjct: 513 QGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGVR 572

Query: 345 P 345
           P
Sbjct: 573 P 573


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 171/366 (46%), Gaps = 4/366 (1%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           +L  +M+     PT +T+ +I        +    + +F  M E  C  +++++  ++D +
Sbjct: 305 SLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAM 364

Query: 184 CKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CKE+K++++  +      K     V++YN +  G+C   R   ALE+L  M      PN 
Sbjct: 365 CKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNE 424

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TYN ++ G+ +   + +A     +M + K    +VTY +++H     G    A  + D 
Sbjct: 425 RTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDL 484

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           +   G++P   TY+  I  LCK   +E A  +F  +  KG   N   Y  +I G C  G+
Sbjct: 485 LKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGK 544

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           ++ A+  + RM  ++C PN  TYN LI   C  G+++ GL + E M      P + TY I
Sbjct: 545 IDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTI 604

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           LI  M    +  D   A ++  +MV  G  P  +T+   ++     GN   A+ ++    
Sbjct: 605 LIEEML---REGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMI 661

Query: 483 RCGRLP 488
             G +P
Sbjct: 662 EAGVMP 667



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 101/390 (25%), Positives = 182/390 (46%), Gaps = 6/390 (1%)

Query: 102 SPSSFDHAIDLAARLR--DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           SP SF +   +    R  D  + + + + M +      + ++  I      AG+ D  + 
Sbjct: 246 SPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGIS 305

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWC 218
           +F  M E  C  ++ ++  I+  L    +  +  +LF   R +  + +V +Y V+ +  C
Sbjct: 306 LFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMC 365

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
             ++ +++  +L EM+++GL P++ TYN +++GY   G+IE A      M+   C  +  
Sbjct: 366 KERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNER 425

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TY  ++ GF     + +A  +   M+   + PS+ TYN++I V CK    ++A  + + +
Sbjct: 426 TYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLL 485

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
              G +P+  TY+V I  LC +  ME A +    +K+   + N   Y  LI   C AG+I
Sbjct: 486 KENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKI 545

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           +  + L E+M S  CLPN  TYN LI  +    K  + L    ++  M   G  P   T+
Sbjct: 546 DEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGL---SMVENMSKMGVKPTVATY 602

Query: 459 NRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             ++  +L  G+   A  +       G  P
Sbjct: 603 TILIEEMLREGDFDHANRVFNQMVSFGHKP 632



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 154/323 (47%), Gaps = 4/323 (1%)

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
           + S+ S+N +L +L +   +++   ++ ++       ++ + N + N +  +    +A  
Sbjct: 176 KLSVRSYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEANL 235

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
            + ++   GL+P+  TY  ++ GY R   +  A++ F  M  + C  + V+YTTI+HG  
Sbjct: 236 YVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLC 295

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G I    ++F  M      P+V TY  +I  L   D     + +F EM  +   PN  
Sbjct: 296 EAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVH 355

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           TY V++  +C   +++ +   +  M +    P+V TYN LIR +C+ G IE  LE+   M
Sbjct: 356 TYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLM 415

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
            S  C PN  TYN LI     RK       A  LL +M++    P   T+N +++     
Sbjct: 416 ESNNCRPNERTYNELICGFSKRKHVHK---AMTLLSKMLESKLTPSLVTYNSLIHVQCKA 472

Query: 469 GNQGLAKEILRLQSRCGRLPRQF 491
           G+   A ++L L    G +P Q+
Sbjct: 473 GHFDSAYKLLDLLKENGLVPDQW 495



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 168/354 (47%), Gaps = 4/354 (1%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           +D   + R       +++ M    L P+  T+  +   Y   G+ + A++I   M  + C
Sbjct: 361 VDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNC 420

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
           R +  ++N ++    K K V KA  L  K+   K    +++YN + +  C     + A +
Sbjct: 421 RPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYK 480

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           +L  + + GL P+  TY++ +    ++ ++EEA   F  +K++  + + V YT ++ G  
Sbjct: 481 LLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHC 540

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G+I  A ++ + M +   LP+ +TYN++I  +CK+  V+  + + E M   G  P   
Sbjct: 541 KAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVA 600

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           TY ++I  +   G+ + A     +M     +P+V TY   I  +C +G ++    +  +M
Sbjct: 601 TYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARM 660

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
                +P+  TY +LIS+      + D   A  +L  M+D G  P    +N ++
Sbjct: 661 IEAGVMPDSLTYTLLISAYERLGLAYD---AFNVLKRMLDAGCDPSHPIWNNLI 711



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 131/269 (48%), Gaps = 1/269 (0%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           TL+ +M    L P+  T+  +      AG  D A K+   + E+G      +++  +D L
Sbjct: 445 TLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTL 504

Query: 184 CKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CK K++E+A +LF   + K  KA+ + Y  + +G C   + ++A+ +L+ M      PN 
Sbjct: 505 CKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNS 564

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
           +TYN ++ G  + G+++E       M K   +  V TYT ++      G+   A  VF+ 
Sbjct: 565 STYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQ 624

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           MV+ G  P V TY A I   C   +V+ A  +   M+  G MP+S TY ++I      G 
Sbjct: 625 MVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERLGL 684

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRY 391
              A   + RM D  C+P+   +N LI Y
Sbjct: 685 AYDAFNVLKRMLDAGCDPSHPIWNNLIWY 713


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 93/300 (31%), Positives = 168/300 (56%), Gaps = 5/300 (1%)

Query: 156  RAVKIFLS-MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVI 213
            + V  FL+ M + G      +F  ++D LCKE KV +A  + ++ R K K  D+++YN +
Sbjct: 1172 KEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTL 1231

Query: 214  ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
             NG CLV +   A ++ + + DRG+  N+ +YNI++ GY +  +I+EA+RFF EM+ +  
Sbjct: 1232 MNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGL 1291

Query: 274  EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
            +   VTY T++      G ++ A+ +F  M   G    ++TY  ++  LCK   +E A+ 
Sbjct: 1292 KPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMD 1351

Query: 334  VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
            +F+ +    + PN   +++++ G+C  G++E A +    +  +  EP+   YNILI   C
Sbjct: 1352 LFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLC 1411

Query: 394  DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
            + G +   ++L  +M    CLP+  T+N++I ++    K +++  A +LL EM +R F P
Sbjct: 1412 NKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLL---KENEIHEAIQLLEEMRNRNFSP 1468



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 159/309 (51%), Gaps = 3/309 (0%)

Query: 157  AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG 216
            AV++F  M + G      ++  +++ LCK +K   A  L +  +G  K DV +Y +I + 
Sbjct: 1035 AVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKGDVFTYGMIIDA 1094

Query: 217  WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID 276
             C    T +AL++  EM+  G+ P++  Y+ ++ G  R G+++EA  FF EM+ R    D
Sbjct: 1095 LCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISAD 1154

Query: 277  VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE 336
            V TY +++HG    G  K      + MV+ G  P   T+  +I  LCK+  V  A  + E
Sbjct: 1155 VYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILE 1214

Query: 337  EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
             M  KG  P+  TYN ++ GLC  G++E A +    + D   + NV +YNILI  +C   
Sbjct: 1215 LMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQ 1274

Query: 397  EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
            +I+     FE+M      P+  TYN LI ++    +S  +  A KL +EM   G   +  
Sbjct: 1275 KIDEAFRFFEEMRPKGLKPSTVTYNTLIGALC---QSGRVRTAQKLFVEMQTCGQFLKLS 1331

Query: 457  TFNRVLNGL 465
            T+  +L+GL
Sbjct: 1332 TYCVLLDGL 1340



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 180/363 (49%), Gaps = 39/363 (10%)

Query: 140  TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
            T+ +I +     G    A+ +F  M   G    +  +++++D LC+  ++++A   FK  
Sbjct: 1087 TYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEM 1146

Query: 200  RGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
             G+   ADV +YN + +G        +    L  MVDRG +P+  T+ I++ G  + G++
Sbjct: 1147 EGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKV 1206

Query: 259  EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
             EA +    M+ +  E D++TY T+++G  +VG+++ A  +F+ + + G+  +V +YN +
Sbjct: 1207 GEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNIL 1266

Query: 319  IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN--------------------------- 351
            I   CK   ++ A   FEEM  KG  P++ TYN                           
Sbjct: 1267 INGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQ 1326

Query: 352  --------VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
                    V++ GLC  G +E A++    +K  E +PN++ ++IL+   C AG++E   +
Sbjct: 1327 FLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWK 1386

Query: 404  LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
             F+++      P+   YNILI+ +  +     L  A KLL +M ++G +P   TFN ++ 
Sbjct: 1387 QFDEISKNGLEPDTIAYNILINGLCNKGM---LSEAVKLLWQMEEKGCLPDSITFNVIIQ 1443

Query: 464  GLL 466
             LL
Sbjct: 1444 NLL 1446



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 166/327 (50%), Gaps = 6/327 (1%)

Query: 85   KALHFFNILSYHPTYA--HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
            +AL FF  +      A  ++ +S  H +  A     ++ V   ++ M      P   TF 
Sbjct: 1138 EALEFFKEMEGRGISADVYTYNSLIHGLSRAGL---WKEVTWFLNLMVDRGFSPDAFTFT 1194

Query: 143  IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK 202
            I+ +     GK   A +I   M   G    + ++NT+++ LC   ++E A  LF+    +
Sbjct: 1195 ILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADR 1254

Query: 203  -FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
              K +V SYN++ NG+C  ++ ++A    +EM  +GL P+  TYN ++    ++G++  A
Sbjct: 1255 GIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTA 1314

Query: 262  WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
             + F+EM+     + + TY  ++ G    G ++ A ++F  +      P++  ++ ++  
Sbjct: 1315 QKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDG 1374

Query: 322  LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
            +C+   +E A   F+E+   G  P++  YN++I GLC+ G +  A++ + +M++  C P+
Sbjct: 1375 MCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPD 1434

Query: 382  VQTYNILIRYFCDAGEIERGLELFEKM 408
              T+N++I+      EI   ++L E+M
Sbjct: 1435 SITFNVIIQNLLKENEIHEAIQLLEEM 1461



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 145/291 (49%), Gaps = 3/291 (1%)

Query: 102  SPSSFDHAIDLAARLRDYRT--VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
            SP +F   I +    ++ +      ++  M+     P   T+  +       G+ + A K
Sbjct: 1187 SPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATK 1246

Query: 160  IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWC 218
            +F S+ + G + ++ S+N +++  CK++K+++A+  F+  R K  K   ++YN +    C
Sbjct: 1247 LFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALC 1306

Query: 219  LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
               R   A ++  EM   G    L+TY ++L G  + G +EEA   F  +KK + + ++ 
Sbjct: 1307 QSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIE 1366

Query: 279  TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
             ++ ++ G    G+++ A   FD +   G+ P    YN +I  LC K  +  A+ +  +M
Sbjct: 1367 VFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQM 1426

Query: 339  VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
              KG +P+S T+NV+I+ L    E+  A++ +  M++    P+    ++L+
Sbjct: 1427 EEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLL 1477



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 157/363 (43%), Gaps = 50/363 (13%)

Query: 146  ERYVSAG------KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
            ERYV         K + A+K+F       C + +   +T   LL    K+     +F ++
Sbjct: 913  ERYVRDQCRFGIIKLNDAIKLF---DRSLCSEPMPCTDTFNHLLASVAKLGYYSTVFPMY 969

Query: 200  RG----KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
            R       + D+ + N++ +  C ++       V    + RG  P+  T   ++KG +  
Sbjct: 970  RKINDVGIQPDLYTLNILIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWME 1029

Query: 256  GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG---------------------------FG 288
              I +A + F EM K+    D  TY  +++G                           +G
Sbjct: 1030 NGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKGDVFTYG 1089

Query: 289  VV-------GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
            ++       G    A ++F  M+  G+LP V  Y++++  LC+   ++ A+  F+EM G+
Sbjct: 1090 MIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGR 1149

Query: 342  GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
            G   +  TYN +I GL   G  +    F+  M D    P+  T+ ILI   C  G++   
Sbjct: 1150 GISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEA 1209

Query: 402  LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
             ++ E M      P++ TYN L++ + +  + +D   A KL   + DRG     F++N +
Sbjct: 1210 QQILELMRHKGKEPDILTYNTLMNGLCLVGQLED---ATKLFESLADRGIKLNVFSYNIL 1266

Query: 462  LNG 464
            +NG
Sbjct: 1267 ING 1269



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/261 (32%), Positives = 124/261 (47%), Gaps = 10/261 (3%)

Query: 231  KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
            +++ D G+ P+L T NI++        +   +  F    KR  E D VT TT+V G  + 
Sbjct: 970  RKINDVGIQPDLYTLNILIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWME 1029

Query: 291  GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG--KGYMPNST 348
              I  A  +FD M   G+L    TY  +I  LCK      AI + E+M G  KG   +  
Sbjct: 1030 NGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKG---DVF 1086

Query: 349  TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            TY ++I  LC  G    AL+    M      P+V  Y+ L+   C  G ++  LE F++M
Sbjct: 1087 TYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEM 1146

Query: 409  -GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467
             G G+   ++ TYN LI  +    ++         L  MVDRGF P  FTF  +++GL  
Sbjct: 1147 EGRGIS-ADVYTYNSLIHGL---SRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCK 1202

Query: 468  IGNQGLAKEILRLQSRCGRLP 488
             G  G A++IL L    G+ P
Sbjct: 1203 EGKVGEAQQILELMRHKGKEP 1223



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 7/134 (5%)

Query: 71   LVDQIIKRLWNHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHR 128
            L+D + K    H  +A+  F  +       H P+   F   +D   R       W     
Sbjct: 1336 LLDGLCKN--GHLEEAMDLFQSIK---KTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDE 1390

Query: 129  MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
            +    L P    + I+     + G    AVK+   M E GC     +FN I+  L KE +
Sbjct: 1391 ISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENE 1450

Query: 189  VEKAYNLFKVFRGK 202
            + +A  L +  R +
Sbjct: 1451 IHEAIQLLEEMRNR 1464


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 113/410 (27%), Positives = 196/410 (47%), Gaps = 22/410 (5%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           AL FFN ++  P + H+  S+   +++  R R                LG  +K    + 
Sbjct: 84  ALSFFNWIALRPGFKHNVHSYSSMLNILIRAR---------------LLGVAEKIRISMI 128

Query: 146 ERYVSAGKADRAVKIFLSMHEHG---CRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRG 201
           +   S       +++F  M+  G    + +L  +NTIL  L K   +++   ++ ++   
Sbjct: 129 KSCCSIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNN 188

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
           +   ++ ++N + NG+C +    +A     ++V  GL+P+  TY  ++ G+ R   ++ A
Sbjct: 189 QISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNA 248

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
           +  FL M ++ C+ + V+YT ++HG    G I  A  +F  M      P+V TY  +I  
Sbjct: 249 YEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYA 308

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           L        A+ +F EM  KG  PN  TY V+I GLC   +M+ A + +  M +    P+
Sbjct: 309 LSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPS 368

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
           V TYN LI  +C  G I+   E+ + M S  C PN  TYN LI  +  ++K      A  
Sbjct: 369 VVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHK---AMA 425

Query: 442 LLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           LL +M++R   P   T+N +++G   + +   A  +L L +  G +P Q+
Sbjct: 426 LLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQW 475



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 93/320 (29%), Positives = 165/320 (51%), Gaps = 4/320 (1%)

Query: 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVIS 209
           AG+ + A+K+F  M E  C  ++ ++  ++  L    +  +A NLF   + K  + +V +
Sbjct: 277 AGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHT 336

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           Y V+ +G C   + ++A ++L EM ++GL P++ TYN ++ GY + G I++A+     M+
Sbjct: 337 YTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLME 396

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
              C  +  TY  ++ G     ++ +A  + + M+   + PS+ TYN++I   CK + +E
Sbjct: 397 SNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLE 456

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
           +A  +   M   G +P+  TY+V I  LC  G +E A      +K    + N   Y  LI
Sbjct: 457 SAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALI 516

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
             +C  G+I+    L E+M +  CLPN  TYN+LI  +   KK  +   A  L+ +M+  
Sbjct: 517 DGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKE---ASSLVAKMLTM 573

Query: 450 GFMPRKFTFNRVLNGLLLIG 469
           G  P   T+  ++  +L  G
Sbjct: 574 GVKPTVVTYTILIGEMLKDG 593



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 175/371 (47%), Gaps = 10/371 (2%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L + MK     P   T+ ++ +      K D A K+   M E G   S+ ++N ++D  C
Sbjct: 321 LFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYC 380

Query: 185 KEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           KE  ++ A+ +  +        +  +YN +  G C  ++ +KA+ +L +M++R L+P+L 
Sbjct: 381 KEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLI 440

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN ++ G  +   +E A+R    M +     D  TY+  +      G ++ A  +FD +
Sbjct: 441 TYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSV 500

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              GV  +   Y A+I   CK   ++ A  + E M+    +PNS TYNV+I GLC   +M
Sbjct: 501 KAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKM 560

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A   V +M     +P V TY ILI      G  +  L++F  M S    P++ TY   
Sbjct: 561 KEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAF 620

Query: 424 ISSMFVR---KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           + + F +   ++ DD++       +M + G +P   T+  +++G   +G    A + L+ 
Sbjct: 621 LHAYFSQGMLEEVDDVIA------KMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKC 674

Query: 481 QSRCGRLPRQF 491
               G  P  +
Sbjct: 675 MVDTGCKPSLY 685



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 99/390 (25%), Positives = 183/390 (46%), Gaps = 17/390 (4%)

Query: 116 LRDYRTV------WTLVHRMKSLSL-------GPTQKTFAIIAERYVSAGKADRAVKIFL 162
           LR Y T+      + L+  MK++ L        P   TF  +   Y   G    A     
Sbjct: 159 LRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYAS 218

Query: 163 SMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVK 221
            + + G      ++ +++   C+ K V+ AY +F +   K  + + +SY  + +G C   
Sbjct: 219 KIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAG 278

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
           R N+AL++  +M +    P + TY +++     +G+  EA   F EMK++ CE +V TYT
Sbjct: 279 RINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYT 338

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
            ++ G     ++  AR +   M   G++PSV TYNA+I   CK+  +++A  + + M   
Sbjct: 339 VLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESN 398

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
              PN+ TYN +I GLC   ++ +A+  + +M + +  P++ TYN LI   C   ++E  
Sbjct: 399 SCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESA 458

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
             L   M     +P+  TY++ I ++    + ++   AG L   +  +G    +  +  +
Sbjct: 459 YRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEE---AGTLFDSVKAKGVKANEVIYTAL 515

Query: 462 LNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           ++G   +G   +A  +L        LP  +
Sbjct: 516 IDGYCKVGKIDVAYSLLERMLNDACLPNSY 545



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 155/339 (45%), Gaps = 36/339 (10%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++  M    L P+  T+  + + Y   G  D A +I   M  + C  +  ++N ++  LC
Sbjct: 356 MLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLC 415

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K++KV KA  L  K+   K    +I+YN + +G C V     A  +L  M + GL P+  
Sbjct: 416 KKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQW 475

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY++ +    + G++EEA   F  +K +  + + V YT ++ G+  VG+I  A ++ + M
Sbjct: 476 TYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERM 535

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSV----------------------------------- 328
           +N   LP+  TYN +I+ LCK+  +                                   
Sbjct: 536 LNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAF 595

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           ++A+ VF  MV  GY P+  TY   +      G +E   + + +M ++   P++ TY +L
Sbjct: 596 DHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVL 655

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           I  +   G   R  +  + M    C P+L   +ILI ++
Sbjct: 656 IDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNL 694



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 164/373 (43%), Gaps = 33/373 (8%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           TL   +K+  +   +  +  + + Y   GK D A  +   M    C  +  ++N +++ L
Sbjct: 495 TLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGL 554

Query: 184 CKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CKEKK+++A +L  K+     K  V++Y ++          + AL+V   MV  G  P++
Sbjct: 555 CKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDV 614

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TY   L  YF  G +EE      +M +     D+VTYT ++ G+  +G   RA +    
Sbjct: 615 CTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKC 674

Query: 303 MVNGGVLPSVATYNAMIQVLCKK------------DSVEN-----------------AIL 333
           MV+ G  PS+   + +I+ L  +            DSV N                 A+ 
Sbjct: 675 MVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNVNSVDIADVWKTLEYEIALK 734

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           +FE+MV  G   + + Y  +I G C    +E A   V  MK+    P+   YN L+   C
Sbjct: 735 LFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCC 794

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
             G     + L + M     LP L++Y +L+  +++   ++    A  +   ++  G+  
Sbjct: 795 KLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEK---AKAVFHGLLSCGYNY 851

Query: 454 RKFTFNRVLNGLL 466
            +  +  +++GLL
Sbjct: 852 DEVAWKVLIDGLL 864



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 98/416 (23%), Positives = 174/416 (41%), Gaps = 35/416 (8%)

Query: 102 SPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           SPS  +++  I    ++ D  + + L+  M    L P Q T+++  +     G+ + A  
Sbjct: 436 SPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGT 495

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWC 218
           +F S+   G + +   +  ++D  CK  K++ AY+L  ++       +  +YNV+  G C
Sbjct: 496 LFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLC 555

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
             K+  +A  ++ +M+  G+ P + TY I++    + G  + A + F  M     + DV 
Sbjct: 556 KEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVC 615

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TYT  +H +   G ++   +V   M   G+LP + TY  +I    +      A    + M
Sbjct: 616 TYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCM 675

Query: 339 VGKGYMPNSTTYNVVIRGLCH-----------------------------TGEMERALEF 369
           V  G  P+    +++I+ L H                             T E E AL+ 
Sbjct: 676 VDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNVNSVDIADVWKTLEYEIALKL 735

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
             +M +  C  +V  Y  LI  FC    +E    L   M      P+ D YN L+     
Sbjct: 736 FEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCC- 794

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
             K      A +L+  MV+ G +P   ++  ++ GL + G+   AK +      CG
Sbjct: 795 --KLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCG 848



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 157/375 (41%), Gaps = 28/375 (7%)

Query: 43  LASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKR-LWNHALKALHFFNILSYHPTYAH 101
           +A ++     P  +T T+          L+ +++K   ++HALK  +    L Y P    
Sbjct: 567 VAKMLTMGVKPTVVTYTI----------LIGEMLKDGAFDHALKVFNHMVSLGYQPDVC- 615

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           + ++F HA      L +   V   + +M    + P   T+ ++ + Y   G   RA    
Sbjct: 616 TYTAFLHAYFSQGMLEEVDDV---IAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFL 672

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNV----IANGW 217
             M + GC+ SL   + ++  L  E       N  K  R +   D +S NV    IA+ W
Sbjct: 673 KCMVDTGCKPSLYIVSILIKNLSHE-------NRMKETRSEIGIDSVS-NVNSVDIADVW 724

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
             ++    AL++ ++MV+ G   +++ Y  ++ G+ +  ++EEA      MK+R      
Sbjct: 725 KTLEY-EIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSE 783

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
             Y +++     +G    A  + D MV  G+LP + +Y  ++  L  + S E A  VF  
Sbjct: 784 DIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHG 843

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           ++  GY  +   + V+I GL     ++   E +  M++ +           +     A  
Sbjct: 844 LLSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKDATAQADIACAALMRLAAANS 903

Query: 398 IERGLELFEKMGSGV 412
            +  LE  E  G  V
Sbjct: 904 TKGALEDHELRGLSV 918


>gi|225425882|ref|XP_002266563.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial [Vitis vinifera]
          Length = 496

 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 111/422 (26%), Positives = 202/422 (47%), Gaps = 10/422 (2%)

Query: 50  STDPRTLTQTLH---CPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSF 106
           S+D       +H   C ++  +  LVD ++ R  +    AL  F        Y H+P ++
Sbjct: 56  SSDDEVFKSLVHDEACNAIPMSQNLVDVLLHRFKDDWKSALGLFRWAESRLGYEHAPEAY 115

Query: 107 DHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE 166
           D  +D+  +L+    +  L+  M+  +L     T A    R   AG+ + AV++F  +  
Sbjct: 116 DMMVDILGKLKQVDKMRALMEEMRQGNL-VRLSTVAKAMRRLAGAGEWEDAVRVFDDLGN 174

Query: 167 HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKA 226
               ++  S N +LD LCKE+KVE+A  +F   +     +  ++N+  +GWC   R ++A
Sbjct: 175 FELEKNTESMNLLLDTLCKERKVEQARAIFLELKPHISPNTHTFNIFIHGWCKANRVDEA 234

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
              ++EM   G  P + +Y+ +++ Y R     + +    +M+ + C  +VVTYTTI+  
Sbjct: 235 EWTIQEMKGHGCRPCVISYSTIIQSYCRQSNFRKVYELLDDMQAQGCAPNVVTYTTIMCS 294

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE-EMVGKGYMP 345
              V + + A  + + M + G  P    YNA+I  L +   +  A+ VFE EM   G  P
Sbjct: 295 LTKVEQFEEALQIAERMRSVGCKPDTLFYNALIHTLGRAGQLREAVRVFEVEMPKTGVPP 354

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDE-CEPNVQTYNILIRYFCDAGEIERGLEL 404
           N++TYN +I   CH  + ++AL  +  +++   C+P++QTY  +++     G+I+     
Sbjct: 355 NTSTYNSMIAMFCHHSQEQKALNLLREIENSTFCKPDIQTYYPVLKSCFKTGKIDSLSNF 414

Query: 405 FEKMGSGVCLP-NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
            + M +   L  ++  Y +LI  +    K +       L  EMV +   PR  T   +L+
Sbjct: 415 LDDMVNKHHLSLDVSAYTLLIHGLCRANKCE---WGYNLFEEMVGKAITPRYKTCALLLD 471

Query: 464 GL 465
            +
Sbjct: 472 EI 473



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 116/286 (40%), Gaps = 42/286 (14%)

Query: 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
           + P   TF I    +  A + D A      M  HGCR  + S++TI+   C++    K Y
Sbjct: 211 ISPNTHTFNIFIHGWCKANRVDEAEWTIQEMKGHGCRPCVISYSTIIQSYCRQSNFRKVY 270

Query: 194 NLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
            L    + +  A +V++Y  I      V++  +AL++ + M   G  P+   YN ++   
Sbjct: 271 ELLDDMQAQGCAPNVVTYTTIMCSLTKVEQFEEALQIAERMRSVGCKPDTLFYNALIHTL 330

Query: 253 FRAGQIEEAWRFF-LEMKKRK------------------------------------CEI 275
            RAGQ+ EA R F +EM K                                      C+ 
Sbjct: 331 GRAGQLREAVRVFEVEMPKTGVPPNTSTYNSMIAMFCHHSQEQKALNLLREIENSTFCKP 390

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP-SVATYNAMIQVLCKKDSVENAILV 334
           D+ TY  ++      G+I    N  D MVN   L   V+ Y  +I  LC+ +  E    +
Sbjct: 391 DIQTYYPVLKSCFKTGKIDSLSNFLDDMVNKHHLSLDVSAYTLLIHGLCRANKCEWGYNL 450

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTG---EMERALEFVGRMKDDE 377
           FEEMVGK   P   T  +++  +         ER   F+ +MK  E
Sbjct: 451 FEEMVGKAITPRYKTCALLLDEIKQKNMHDAAERIEVFMKQMKTSE 496


>gi|357142780|ref|XP_003572691.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Brachypodium distachyon]
          Length = 501

 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/408 (28%), Positives = 188/408 (46%), Gaps = 13/408 (3%)

Query: 62  CPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRT 121
           CP +  T  +VD ++ +  +    AL  F        Y H+  +    IDL  ++R    
Sbjct: 76  CPGIQPTSNIVDGLLSKFGDDWKSALGLFQWAQSSGNYKHTAYACSRMIDLLGKMRQIDQ 135

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
           +W L+  M    L  T +  A    R   A +   AV +F  + + G  ++  + N +LD
Sbjct: 136 MWDLLSDMHCRGL-VTVEAAATSIRRLAGARRWKDAVLLFDKLGDMGLERNTETMNVLLD 194

Query: 182 LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
            LCKEKKVE A  +F V     + D  ++N+  +GWC  +R ++A+  ++EM  +G  P+
Sbjct: 195 ALCKEKKVEVARKVFLVLSPHIQPDAYTFNIFVHGWCSARRIDEAMWTIEEMKAQGFPPS 254

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           + TY  VL+ Y +       +     M    C  +V+TYT I+         + A +V  
Sbjct: 255 VITYTTVLEAYCKQHNFRMVYEILDSMSSEGCHPNVITYTMIMTSLAKCHMFEEALSVSH 314

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE-EMVGKGYMPNSTTYNVVIRGLCHT 360
            M + G  P    YN++I +L K   +  A  VF+ EM   G   +  TYN +I   C+ 
Sbjct: 315 RMKSSGCKPDTLFYNSLINLLGKAGHLSEASQVFQVEMPMNGVPRSLATYNTMISVFCYK 374

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCD---AGEIERGL--ELFEKMGSGVCLP 415
              E AL  +  M+   C+P++QTY  L+R F       +  R L  EL  K   G+   
Sbjct: 375 DLDEDALSVLKEMETQSCKPDLQTYRPLLRLFLSRRGQDDTVRNLLNELMNKHSLGL--- 431

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           +LDTY +LI  +    ++D    A +L  EMV    +PR  T   +L+
Sbjct: 432 DLDTYTLLIHGLCRVGETD---WAYRLFDEMVGSEIVPRYRTCELLLS 476



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 105/269 (39%), Gaps = 33/269 (12%)

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
           +PNL T N+ ++    A QI+ +      +K R   +  +  +    G G  G I+   N
Sbjct: 34  HPNLNTINLTVEEETSATQIKNSL-----LKARNGSVQDLVQSL---GIGCPG-IQPTSN 84

Query: 299 VFDGMVN-------------------GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           + DG+++                   G    +    + MI +L K   ++    +  +M 
Sbjct: 85  IVDGLLSKFGDDWKSALGLFQWAQSSGNYKHTAYACSRMIDLLGKMRQIDQMWDLLSDMH 144

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            +G +         IR L      + A+    ++ D   E N +T N+L+   C   ++E
Sbjct: 145 CRGLVTVEAA-ATSIRRLAGARRWKDAVLLFDKLGDMGLERNTETMNVLLDALCKEKKVE 203

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
              ++F  +   +  P+  T+NI +      ++ D+ +     + EM  +GF P   T+ 
Sbjct: 204 VARKVFLVLSPHI-QPDAYTFNIFVHGWCSARRIDEAMWT---IEEMKAQGFPPSVITYT 259

Query: 460 RVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            VL       N  +  EIL   S  G  P
Sbjct: 260 TVLEAYCKQHNFRMVYEILDSMSSEGCHP 288


>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 584

 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 111/366 (30%), Positives = 180/366 (49%), Gaps = 5/366 (1%)

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQ-KTFAIIAERYVSAGKADRA 157
           Y+H+ S     I    +   + T  +L+H +       T+ + + +I   YV +   D +
Sbjct: 55  YSHAQSLLLQVISGKIQ-SQFFTSSSLLHYLTESETSKTKSRLYEVIINAYVQSQSLDSS 113

Query: 158 VKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGW 217
           +  F  M + G     N FN +L  +       + +  F   + K   DV S+ ++  G 
Sbjct: 114 IYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNESKIKVVLDVYSFGIVIKGC 173

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           C      K+ ++L E+ + G +PN+  Y  ++ G  + G+IE+A   F EM K     + 
Sbjct: 174 CEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANE 233

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
            TYT ++HG    G  K+   +++ M   GV P++ TYN ++  LCK    ++A  VF+E
Sbjct: 234 WTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDE 293

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M  +G   N  TYN +I GLC   +   A E + +MK D   PN+ TYN LI  FC   +
Sbjct: 294 MRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRK 353

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           + + L L   + S    P+L TYNIL+S  F +K   D   AGK++ EM +RG  P K T
Sbjct: 354 LGKALSLCRDLKSRGLSPSLVTYNILVSG-FCKK--GDTSGAGKVVKEMEERGIKPSKVT 410

Query: 458 FNRVLN 463
           +  +++
Sbjct: 411 YTILID 416



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 176/375 (46%), Gaps = 6/375 (1%)

Query: 90  FNILSYHPTYAHSPSS--FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
           F++L     +  SP+   +   ID   +  +      L   M    L   + T+ ++   
Sbjct: 183 FDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHG 242

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKAD 206
               G   +  +++  M EHG   +L+++N +++ LCK+ + + A+ +F   R +    +
Sbjct: 243 LFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCN 302

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           +++YN +  G C   + N+A EV+ +M   G+NPNL TYN ++ G+    ++ +A     
Sbjct: 303 IVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCR 362

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           ++K R     +VTY  +V GF   G+   A  V   M   G+ PS  TY  +I    + D
Sbjct: 363 DLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSD 422

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
           ++E AI +   M   G  P+  TY+V+I G C  G M  A      M + + EPN   YN
Sbjct: 423 NMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYN 482

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            ++  +C  G   R L LF +M      PN+ +Y  +I  +   +KS +   A  L+ +M
Sbjct: 483 TMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERKSKE---AEGLVEKM 539

Query: 447 VDRGFMPRKFTFNRV 461
           +D G  P     N +
Sbjct: 540 IDSGIGPSDSILNLI 554



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 179/342 (52%), Gaps = 6/342 (1%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           +F I+ +    AG+ +++  + + + E G   ++  + T++D  CK+ ++EKA +LF   
Sbjct: 165 SFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLF-FE 223

Query: 200 RGKFK--ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
            GKF   A+  +Y V+ +G        +  E+ ++M + G+ PNL TYN V+    + G+
Sbjct: 224 MGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGR 283

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
            ++A++ F EM++R    ++VTY T++ G     +   A  V D M + G+ P++ TYN 
Sbjct: 284 TKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNT 343

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           +I   C    +  A+ +  ++  +G  P+  TYN+++ G C  G+   A + V  M++  
Sbjct: 344 LIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERG 403

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
            +P+  TY ILI  F  +  +E+ ++L   M      P++ TY++LI    ++ + ++  
Sbjct: 404 IKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNE-- 461

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
            A +L   MV++ F P +  +N ++ G    G+   A  + R
Sbjct: 462 -ASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLFR 502



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 126/239 (52%), Gaps = 1/239 (0%)

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYN 211
           KA+ A ++   M   G   +L ++NT++D  C  +K+ KA +L +  + +     +++YN
Sbjct: 318 KANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYN 377

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
           ++ +G+C    T+ A +V+KEM +RG+ P+  TY I++  + R+  +E+A +    M++ 
Sbjct: 378 ILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEEL 437

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
               DV TY+ ++HGF + G +  A  +F  MV     P+   YN M+   CK+ S   A
Sbjct: 438 GLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRA 497

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           + +F EM  K   PN  +Y  +I  LC   + + A   V +M D    P+    N++ R
Sbjct: 498 LRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDSGIGPSDSILNLISR 556


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 187/365 (51%), Gaps = 4/365 (1%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           S  +F+  I++  +    +     +  M++L + P   T+  I   Y S G+ + A  IF
Sbjct: 190 SVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIF 249

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLV 220
             M   G +    ++ + +  +CKE K+E+A  + +  +    +   ++YN + +G+C  
Sbjct: 250 DLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNK 309

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
                A +   +MV  GL P ++TYN+++   F   +++EA     EM ++    D VTY
Sbjct: 310 GNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTY 369

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
             +++G+   G +K+A  + D M++ G+ P+  TY ++I VL K+  ++ A  +FE++V 
Sbjct: 370 NILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVR 429

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           KG  P+   +N +I G C  G M+RA   +  M   +  P+  T+N L++  C  G++E 
Sbjct: 430 KGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEA 489

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
             EL E+M S    P+  +YN LIS      K  D+  A ++  EM+  GF P   T+N 
Sbjct: 490 ARELIEEMKSRGIKPDHISYNTLISGY---SKRGDMKDAFRVRDEMLSIGFNPTLLTYNA 546

Query: 461 VLNGL 465
           ++ GL
Sbjct: 547 LIQGL 551



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 124/475 (26%), Positives = 215/475 (45%), Gaps = 31/475 (6%)

Query: 42  ALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYH----- 96
            L+  I T   PRT+   +H    H+   L  +I   L + AL +LH    L++      
Sbjct: 2   TLSPSIPTELTPRTILDLIHSSQWHFIKHLAHKITPSLISTALTSLHKTPDLAFQFVTHI 61

Query: 97  --------------PTYAHSPSS------FDHAIDLAARLRDYRTVWTLVHRMKSLSLGP 136
                            +H+P+S          I+  + +   R V+  +   + +    
Sbjct: 62  GFGDLDIKSKCLAMAVISHAPNSKPSLQLLKETIN--SGVYSIREVFNELGVARGVLGIK 119

Query: 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF 196
           T   + ++        + D A + F  M   G    +++ N +L L  K  + EKA+ L+
Sbjct: 120 TYVLYDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLY 179

Query: 197 -KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
            ++FR + K+ V+++N++ N  C   +  KA E +  M   G+ PN+ TYN ++ GY   
Sbjct: 180 AEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSR 239

Query: 256 GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
           G++E A   F  MK R  + D  TY + + G    G+++ A  + + M   G+ P+  TY
Sbjct: 240 GRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTY 299

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           N +I   C K ++E A    ++MV +G MP  +TYN++I  L    +M+ A   +  M +
Sbjct: 300 NTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSE 359

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
               P+  TYNILI  +C  G +++   L ++M S    P   TY  LI   +V  K   
Sbjct: 360 KGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLI---YVLSKRGR 416

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
           +  A  L  ++V +G  P    FN +++G    GN   A  +L+   +   +P +
Sbjct: 417 MKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDE 471



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 148/304 (48%), Gaps = 1/304 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++ +MK + L PT  T+  + + Y + G  + A      M   G   +++++N ++  L 
Sbjct: 283 MLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALF 342

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            + K+++A  + K    K    D ++YN++ NG+C      KA  +  EM+ +G+ P   
Sbjct: 343 LDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRV 402

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY  ++    + G++++A   F ++ ++    D++ +  ++ G    G + RA  +   M
Sbjct: 403 TYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEM 462

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
               V+P   T+N ++Q  C++  VE A  + EEM  +G  P+  +YN +I G    G+M
Sbjct: 463 DQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDM 522

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A      M      P + TYN LI+  C   E +   +L ++M S    PN +TY  L
Sbjct: 523 KDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLSL 582

Query: 424 ISSM 427
           I  +
Sbjct: 583 IEGI 586



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 1/156 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P    F  + + + + G  DRA  +   M +        +FNT++   C+E KVE A  L
Sbjct: 434 PDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAAREL 493

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            +  + +  K D ISYN + +G+        A  V  EM+  G NP L TYN +++G  +
Sbjct: 494 IEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCK 553

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
             + + A +   EM  +    +  TY +++ G G V
Sbjct: 554 NEEGDHAEQLLKEMISKGITPNDNTYLSLIEGIGNV 589



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 70/147 (47%), Gaps = 1/147 (0%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           F+  ID      +    + ++  M  + + P + TF  + +     GK + A ++   M 
Sbjct: 439 FNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMK 498

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTN 224
             G +    S+NT++    K   ++ A+ +  ++    F   +++YN +  G C  +  +
Sbjct: 499 SRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGD 558

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKG 251
            A ++LKEM+ +G+ PN  TY  +++G
Sbjct: 559 HAEQLLKEMISKGITPNDNTYLSLIEG 585


>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
          Length = 514

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 114/407 (28%), Positives = 200/407 (49%), Gaps = 18/407 (4%)

Query: 71  LVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMK 130
           +VD++ K   NH +KA + F  +     + +  + ++  ID       +     L+  M 
Sbjct: 86  IVDRLCKD-GNH-IKAQNIFTEMHEKGIFPNVLT-YNCMIDGYCSYGKWSDAEQLLRDMI 142

Query: 131 SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190
             ++ P   TF+ +   +V  GK   A +++  M       +  ++++++D  CK  ++E
Sbjct: 143 ERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLE 202

Query: 191 KAYNLFKVFRGK-FKADVISYNVIANGWCLVKR-----------TNKALEVLKEMVDRGL 238
            A ++F +   K    D+I+ N + +G C  KR            N A ++ +EM+  G+
Sbjct: 203 DAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGV 262

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
           +P++ T N +L G    G++E+A   F   +K K ++D  T   I++G     ++  A +
Sbjct: 263 SPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIINGMCKGNKVDEAWD 322

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
           +F+ +   GV   V TYN +I V  K+ +   A  ++ EM+ KG +P++ TYN ++ G C
Sbjct: 323 LFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIPSTVTYNSMVDGFC 382

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLD 418
               +E A + V  M  + C P+V T++ LI+ +C AG ++ GLELF +M     + +  
Sbjct: 383 KQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLELFSEMCQRGLVADTI 442

Query: 419 TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           TYN LI       K  DL  A  +  EMV  G  P   TF  +L GL
Sbjct: 443 TYNALIHGFC---KVGDLNGAQDIFEEMVSSGVCPDTITFRSMLAGL 486



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 182/354 (51%), Gaps = 17/354 (4%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           LV RM      P   T+  I       G    A+ +   M E   + ++  ++ I+D LC
Sbjct: 32  LVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVSALNMLRKMDESQIKANVVIYSAIVDRLC 91

Query: 185 KEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           K+    KA N+F     +G F  +V++YN + +G+C   + + A ++L++M++R ++P++
Sbjct: 92  KDGNHIKAQNIFTEMHEKGIF-PNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDV 150

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            T++ ++  + + G++  A   + EM +R      +TY++++ GF     ++ A+++FD 
Sbjct: 151 VTFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDL 210

Query: 303 MVNGGVLPSVATYNAMIQVLCKKD-----------SVENAILVFEEMVGKGYMPNSTTYN 351
           MV+ G  P + T N +I   C+             +V  A  +F+EM+  G  P+  T N
Sbjct: 211 MVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCN 270

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
            ++ GLC  G++E+ALE     +  + + +  T NI+I   C   +++   +LF  +   
Sbjct: 271 TLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIINGMCKGNKVDEAWDLFNSLPVN 330

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
               ++ TYNILI  +FV  K  + L A  + +EM+ +G +P   T+N +++G 
Sbjct: 331 GVETDVVTYNILI-GVFV--KEGNFLRAEDIYLEMLCKGIIPSTVTYNSMVDGF 381



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 99/438 (22%), Positives = 191/438 (43%), Gaps = 52/438 (11%)

Query: 100 AHSPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRA 157
            H P +  +   ++   +L D  +   ++ +M    +      ++ I +R    G   +A
Sbjct: 40  GHQPDAVTYGTIVNGMCKLGDTVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKA 99

Query: 158 VKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANG 216
             IF  MHE G   ++ ++N ++D  C   K   A  L + +       DV++++ + N 
Sbjct: 100 QNIFTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINA 159

Query: 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID 276
           +    + + A E+ +EM+ R + P   TY+ ++ G+ +  ++E+A   F  M  + C  D
Sbjct: 160 FVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPD 219

Query: 277 VVTYTTIV-----------HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
           ++T  T++           HGF  VG +  A+++F  M++ GV P + T N ++  LC+ 
Sbjct: 220 IITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCEN 279

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
             +E A+ +F+         ++ T N++I G+C   +++ A +    +  +  E +V TY
Sbjct: 280 GKLEKALEMFKVFQKSKMDLDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTY 339

Query: 386 NILIRYF-----------------------------------CDAGEIERGLELFEKMGS 410
           NILI  F                                   C    +E   ++ + M S
Sbjct: 340 NILIGVFVKEGNFLRAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVS 399

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
             C P++ T++ LI       + DD L   +L  EM  RG +    T+N +++G   +G+
Sbjct: 400 EGCSPDVVTFSTLIKGYCKAGRVDDGL---ELFSEMCQRGLVADTITYNALIHGFCKVGD 456

Query: 471 QGLAKEILRLQSRCGRLP 488
              A++I       G  P
Sbjct: 457 LNGAQDIFEEMVSSGVCP 474



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 135/266 (50%), Gaps = 1/266 (0%)

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKAD 206
           +   G  + A  +F  M  +G    + + NT+L  LC+  K+EKA  +FKVF + K   D
Sbjct: 241 FCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLD 300

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
             + N+I NG C   + ++A ++   +   G+  ++ TYNI++  + + G    A   +L
Sbjct: 301 TATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYL 360

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           EM  +      VTY ++V GF     ++ AR + D MV+ G  P V T++ +I+  CK  
Sbjct: 361 EMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAG 420

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            V++ + +F EM  +G + ++ TYN +I G C  G++  A +    M      P+  T+ 
Sbjct: 421 RVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFR 480

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGV 412
            ++   C   E+++GL + E +   V
Sbjct: 481 SMLAGLCTKAELQKGLTMLEDLQKSV 506



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 128/284 (45%), Gaps = 8/284 (2%)

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
           A+V+++  + NG C   R  +AL ++  MV+ G  P+  TY  ++ G  + G    A   
Sbjct: 8   ANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVSALNM 67

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
             +M + + + +VV Y+ IV      G   +A+N+F  M   G+ P+V TYN MI   C 
Sbjct: 68  LRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDGYCS 127

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
                +A  +  +M+ +   P+  T++ +I      G++  A E    M      P   T
Sbjct: 128 YGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTTIT 187

Query: 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS--------DDL 436
           Y+ +I  FC    +E    +F+ M S  C P++ T N LI      K+          ++
Sbjct: 188 YSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNV 247

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
            VA  L  EM+  G  P   T N +L GL   G    A E+ ++
Sbjct: 248 NVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKV 291



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 111/232 (47%), Gaps = 3/232 (1%)

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           MV+ G   N+ T+  ++ G  R G++ +A      M +   + D VTY TIV+G   +G+
Sbjct: 1   MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGD 60

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
              A N+   M    +  +V  Y+A++  LCK  +   A  +F EM  KG  PN  TYN 
Sbjct: 61  TVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNC 120

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           +I G C  G+   A + +  M +   +P+V T++ LI  F   G++    EL+ +M    
Sbjct: 121 MIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRN 180

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
             P   TY+ +I       + +D   A  +   MV +G  P   T N +++G
Sbjct: 181 IFPTTITYSSMIDGFCKHSRLED---AKHMFDLMVSKGCSPDIITLNTLIDG 229



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 87/182 (47%), Gaps = 1/182 (0%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           W L + +    +     T+ I+   +V  G   RA  I+L M   G   S  ++N+++D 
Sbjct: 321 WDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIPSTVTYNSMVDG 380

Query: 183 LCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
            CK+ ++E+A  +      +    DV++++ +  G+C   R +  LE+  EM  RGL  +
Sbjct: 381 FCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLELFSEMCQRGLVAD 440

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
             TYN ++ G+ + G +  A   F EM       D +T+ +++ G     E+++   + +
Sbjct: 441 TITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSMLAGLCTKAELQKGLTMLE 500

Query: 302 GM 303
            +
Sbjct: 501 DL 502


>gi|224128340|ref|XP_002320305.1| predicted protein [Populus trichocarpa]
 gi|222861078|gb|EEE98620.1| predicted protein [Populus trichocarpa]
          Length = 540

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 110/456 (24%), Positives = 216/456 (47%), Gaps = 8/456 (1%)

Query: 36  AAADPAALASLILTSTDPRTLTQTLHCP----SLHWTPQLVDQIIKRLWNHALKALHFFN 91
           + ADPA +  +     +   L   +        ++ +  LV ++++R  +    A  FF 
Sbjct: 69  STADPAEVHKVCKVIDELFALDHNMEAVLDECGINLSHDLVIEVLERFRHARKPAFRFFC 128

Query: 92  ILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSA 151
             +  P + H   ++   + + A+ R + T+ +++  M    L  T  TF+I    + +A
Sbjct: 129 WAAEKPGFVHDSRTYHSMMIILAKARQFETMMSMLEEMGEKRL-LTLDTFSIAMRAFAAA 187

Query: 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYN 211
            +  +AV IF  M  H  R  + + N +LD L + K  ++A  LF    G+F  ++ +Y 
Sbjct: 188 KERKKAVGIFELMKNHKYRVGVETINALLDSLGRAKLGKEAQALFGKLEGRFTPNLRTYT 247

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
           V+ NGWC VK   +A  +  EM+D G  P++ T+NI+L+G  R+ +  +A +FF  MK +
Sbjct: 248 VLLNGWCRVKNLMEAGRIWNEMLDEGFKPDIVTHNIMLEGLLRSKKRSDAIKFFEVMKAK 307

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
               DV +YT ++       ++K A   F  MV+ G  P  A Y  ++        ++  
Sbjct: 308 GPSPDVRSYTILIRDLCKQTKMKEAVGYFYEMVDSGCHPDAAVYTCLMTGYGNHKRMDMV 367

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
             + +EM  KG  P+  TYN +I+ +      + A+    +M  +  EP++ +YN++++ 
Sbjct: 368 YELLKEMKEKGCPPDGKTYNALIKLMTSQRMPDDAVRIYKKMIQNGIEPSIHSYNMIMKS 427

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
           +      E G  ++++M      P+ ++Y + I  +  + +S++   A K L EM+++G 
Sbjct: 428 YFRIRNYEMGHAVWDEMSKKGFCPDDNSYTVFIGGLISQGRSEE---ACKYLEEMIEKGM 484

Query: 452 MPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
              +  +N+        G   + +E+ +     G+ 
Sbjct: 485 KAPQLDYNKFAADFSRAGKPDILEELAQKMKFSGKF 520


>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
 gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
          Length = 457

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 154/299 (51%), Gaps = 7/299 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           PT  TF  +          + A  +  +M   G +  + ++NT++D LCK  ++++A  L
Sbjct: 150 PTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQL 209

Query: 196 FKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            +  +    A DV++Y+    G C   +   A +VL++M D   +PN+ TYN +L G  +
Sbjct: 210 LERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCK 269

Query: 255 AGQIEEAWRFFLEMKKRK-CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
           +G+I+ A     +M     C ++VV Y+T+V G   +G  + AR+V + M   G  P V 
Sbjct: 270 SGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVV 329

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           TY++++  LCK   +E A+    EM  +G  PN+ TY  ++ GLC  G +  A   V  M
Sbjct: 330 TYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEM 389

Query: 374 -----KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
                  D C P+V TYN LI   C AG I+  L+ F++M S  C P+  +Y+ ++  +
Sbjct: 390 SSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGL 448



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 175/382 (45%), Gaps = 42/382 (10%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   TF  +   +   G+     ++  +M   G + ++ S+N +L+ LCK ++  +A  L
Sbjct: 8   PNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHEAEEL 67

Query: 196 FK--VFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN----------- 241
            +  + RG +   D+++Y+ + +G+C   +  ++ E+LKE++ RGL P+           
Sbjct: 68  VRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASL 127

Query: 242 ------------------------LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
                                   L T+N ++ G  R   +E A      M     + DV
Sbjct: 128 CKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADV 187

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           VTY T++ G    G ++ A  + + M   G  P V  Y++ +  LCK   V NA  V E+
Sbjct: 188 VTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQ 247

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM-KDDECEPNVQTYNILIRYFCDAG 396
           M    + PN  TYN ++ GLC +G+++ ALE + +M   D C  NV  Y+ ++   C  G
Sbjct: 248 MRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLG 307

Query: 397 EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
             +    + E M    C P++ TY+ L++ +    K ++ + A   + EM   G  P   
Sbjct: 308 RTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEA---VREMAMEGCKPNAV 364

Query: 457 TFNRVLNGLLLIGNQGLAKEIL 478
           T+  +++GL   G    A+ ++
Sbjct: 365 TYCSLVHGLCSCGRLAEAERMV 386



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 154/306 (50%), Gaps = 25/306 (8%)

Query: 70  QLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRM 129
           ++ D +++ +    +KA    ++++Y+        +    +  A RL++      L+ RM
Sbjct: 169 EMADSLLQTMAASGVKA----DVVTYN--------TLMDGLCKAGRLQE---AEQLLERM 213

Query: 130 KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV 189
           K+    P    ++        +GK   A ++   M +     ++ ++NTILD LCK  K+
Sbjct: 214 KASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKI 273

Query: 190 EKAYNLFKVFRGKFKA--DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           + A  + +          +V+ Y+ + +G C + RT +A  V++ M   G  P++ TY+ 
Sbjct: 274 DTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSS 333

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ G  +AG+IEEA     EM    C+ + VTY ++VHG    G +  A  + + M +GG
Sbjct: 334 LVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGG 393

Query: 308 VL-----PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
                  PSV+TYNA+I  LCK   +++A+  F+ M  +G  P+  +Y+ ++ GL  +G 
Sbjct: 394 GGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSG- 452

Query: 363 MERALE 368
             RAL+
Sbjct: 453 --RALQ 456



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 127/283 (44%), Gaps = 41/283 (14%)

Query: 234 VDR-GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK---------------CEI-- 275
           +DR G  PN  T+N ++ G+ + G+  +  R    M  R                C++  
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLER 60

Query: 276 --------------------DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
                               D+VTY+T++ G+   G+++ +R +   +++ G+ P    Y
Sbjct: 61  WHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMY 120

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
             ++  LCK   +  A+ + EEM+  G  P   T+N +I G C    +E A   +  M  
Sbjct: 121 TKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAA 180

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
              + +V TYN L+   C AG ++   +L E+M +  C P++  Y+  +  +    KS  
Sbjct: 181 SGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLC---KSGK 237

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           +L A ++L +M D    P   T+N +L+GL   G    A E++
Sbjct: 238 VLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMM 280



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 99/214 (46%), Gaps = 42/214 (19%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM-HEHGCRQSLNSFNTILDLL 183
           ++ +M+     P   T+  I +    +GK D A+++   M    GC  ++  ++T++D L
Sbjct: 244 VLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGL 303

Query: 184 CKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN- 241
           CK  + ++A ++ +   R   + DV++Y+ + NG C   +  +A+E ++EM   G  PN 
Sbjct: 304 CKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNA 363

Query: 242 ---------------------------------------LTTYNIVLKGYFRAGQIEEAW 262
                                                  ++TYN ++ G  +AG+I++A 
Sbjct: 364 VTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDAL 423

Query: 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           +FF  M+ + C+ D V+Y+TIV G    G   +A
Sbjct: 424 KFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQA 457



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 103/223 (46%), Gaps = 5/223 (2%)

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M +  C  + VT+  +V+GF   G       + + M   G+ P+V +YN +++ LCK + 
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLER 60

Query: 328 VENAILVFEEMVGKG--YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
              A  +  +M+ +G    P+  TY+ ++ G C  G++E + E +  +      P+   Y
Sbjct: 61  WHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMY 120

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
             ++   C +  +   LEL E+M    C P L T+N LIS     K   +L +A  LL  
Sbjct: 121 TKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREK---NLEMADSLLQT 177

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           M   G      T+N +++GL   G    A+++L      G  P
Sbjct: 178 MAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAP 220


>gi|125562258|gb|EAZ07706.1| hypothetical protein OsI_29963 [Oryza sativa Indica Group]
          Length = 465

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 114/430 (26%), Positives = 190/430 (44%), Gaps = 42/430 (9%)

Query: 54  RTLTQTLHCPSLHWTPQLVDQIIKRLW-NHALKALHFFNILSYHPTYAHSPSSFDHAIDL 112
           RTL + L  PS  + P L  ++I+       L A  F   L   P++A S   FD  +  
Sbjct: 70  RTLNR-LRLPS-PFPPDLALRVIRAAAPAEPLHAARFLAWLRAKPSFAASADHFDALLLP 127

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
            AR R +  +W+L   M++L L  +  TF+ +   Y  +   D+AV++F  +   GC Q+
Sbjct: 128 LARARLFTHLWSLAADMRALGLPLSPSTFSAVISSYGQSRLTDQAVEVFNRLPRFGCPQT 187

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLK 231
              +N +LD LC       AY L + + R     D  +++ + + WC   +  +A   L 
Sbjct: 188 TQVYNALLDALCANGSFAGAYKLLRRMARKGVAPDRATFSTLVDAWCAAGKLREAQAFLD 247

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
           +M +RG +P +   ++++ G  RAG++EEA  F L M K     DV T+ ++       G
Sbjct: 248 DMAERGFHPPVRGRDLLVDGLVRAGRLEEAKAFALRMTKEGVLPDVATFNSLAEALCSSG 307

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
           +++ A  +     + G+ P ++TY  MI  + K   ++ A  +F   +  G+ P  + Y 
Sbjct: 308 DVEFAVALLADASSRGLCPDISTYKVMIPAVAKAGRIDEAFRLFYAALEDGHRPFPSLYA 367

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
            +I+ LC  G    A  F G MK     PN   Y +L++     G               
Sbjct: 368 AIIKALCKAGRFADAFAFFGDMKSKGHPPNRPVYVMLVKMCVRGGRF------------- 414

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
                ++  N L                    +EM + GF PR  TFN V++GL   G  
Sbjct: 415 -----VEAANYL--------------------VEMSEAGFAPRAPTFNSVVDGLRHCGKH 449

Query: 472 GLAKEILRLQ 481
            LA+ + +L+
Sbjct: 450 DLAQRMEQLE 459



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 3/152 (1%)

Query: 337 EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
           +M   G   + +T++ VI     +   ++A+E   R+    C    Q YN L+   C  G
Sbjct: 143 DMRALGLPLSPSTFSAVISSYGQSRLTDQAVEVFNRLPRFGCPQTTQVYNALLDALCANG 202

Query: 397 EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
                 +L  +M      P+  T++ L+ +     K   L  A   L +M +RGF P   
Sbjct: 203 SFAGAYKLLRRMARKGVAPDRATFSTLVDAWCAAGK---LREAQAFLDDMAERGFHPPVR 259

Query: 457 TFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             + +++GL+  G    AK      ++ G LP
Sbjct: 260 GRDLLVDGLVRAGRLEEAKAFALRMTKEGVLP 291


>gi|125604075|gb|EAZ43400.1| hypothetical protein OsJ_28005 [Oryza sativa Japonica Group]
          Length = 461

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 114/430 (26%), Positives = 190/430 (44%), Gaps = 42/430 (9%)

Query: 54  RTLTQTLHCPSLHWTPQLVDQIIKRLW-NHALKALHFFNILSYHPTYAHSPSSFDHAIDL 112
           RTL + L  PS  + P L  ++I+       L A  F   L   P++A S   FD  +  
Sbjct: 66  RTLNR-LRLPS-PFPPDLALRVIRAAAPAEPLHAARFLAWLRAKPSFAASADHFDALLLP 123

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
            AR R +  +W+L   M++L L  +  TF+ +   Y  +   D+AV++F  +   GC Q+
Sbjct: 124 LARARLFTHLWSLAADMRALGLPLSPSTFSAVISSYGQSRLTDQAVEVFNRLPRFGCPQT 183

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLK 231
              +N +LD LC       AY L + + R     D  +++ + + WC   +  +A   L 
Sbjct: 184 TQVYNALLDALCANGSFAGAYKLLRRMARKGVAPDRATFSTLVDAWCAAGKLREAQAFLD 243

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
           +M +RG +P +   ++++ G  RAG++EEA  F L M K     DV T+ ++       G
Sbjct: 244 DMAERGFHPPVRGRDLLVDGLVRAGRLEEAKAFALRMTKEGVLPDVATFNSLAEALCSSG 303

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
           +++ A  +     + G+ P ++TY  MI  + K   ++ A  +F   +  G+ P  + Y 
Sbjct: 304 DVEFAVALLADASSRGLCPDISTYKVMIPAVAKAGRIDEAFRLFYAALEDGHRPFPSLYA 363

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
            +I+ LC  G    A  F G MK     PN   Y +L++     G               
Sbjct: 364 AIIKALCKAGRFADAFAFFGDMKSKGHPPNRPVYVMLVKMCVRGGRF------------- 410

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
                ++  N L                    +EM + GF PR  TFN V++GL   G  
Sbjct: 411 -----VEAANYL--------------------VEMSEAGFAPRAPTFNSVVDGLRHCGKH 445

Query: 472 GLAKEILRLQ 481
            LA+ + +L+
Sbjct: 446 DLAQRMEQLE 455



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 3/152 (1%)

Query: 337 EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
           +M   G   + +T++ VI     +   ++A+E   R+    C    Q YN L+   C  G
Sbjct: 139 DMRALGLPLSPSTFSAVISSYGQSRLTDQAVEVFNRLPRFGCPQTTQVYNALLDALCANG 198

Query: 397 EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
                 +L  +M      P+  T++ L+ +     K   L  A   L +M +RGF P   
Sbjct: 199 SFAGAYKLLRRMARKGVAPDRATFSTLVDAWCAAGK---LREAQAFLDDMAERGFHPPVR 255

Query: 457 TFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             + +++GL+  G    AK      ++ G LP
Sbjct: 256 GRDLLVDGLVRAGRLEEAKAFALRMTKEGVLP 287


>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 119/451 (26%), Positives = 200/451 (44%), Gaps = 80/451 (17%)

Query: 89  FFNILSYHPTYAHSPSSFDHAIDLA--ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAE 146
           F  +L  HP     P  F+ A  L   A+++ Y TV +L  +M S  + P   T  I+  
Sbjct: 44  FHRMLHMHP----PPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTIVIN 99

Query: 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKA 205
            +    + D A+ +   + + G +    +F T++  LC   K+ +A ++F    G+ F+ 
Sbjct: 100 SFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQP 159

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN------------------- 246
           +V++Y  + NG C  ++  +AL +  EM+ +G++P++ TYN                   
Sbjct: 160 NVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLL 219

Query: 247 ----------------IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
                           IV+    + G++ EA      M +   E DVVTY  ++ G  + 
Sbjct: 220 NEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLR 279

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
            E+  A  VFD MV  G + +V +YN +I   CK   ++ A+ +FEEM  +  +PN+ TY
Sbjct: 280 SEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTY 339

Query: 351 NVVIRGLCHTGEMERALEFVGRM-----------------------------------KD 375
           + +I GLCH G ++ A+     M                                   + 
Sbjct: 340 STLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEG 399

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
              +P+VQ YNI I   C AG++E   +LF  +      P++ T+NI+I  +  R   D+
Sbjct: 400 SNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDE 459

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
              A KL  EM + G +    T+N +  GLL
Sbjct: 460 ---ASKLFREMDENGCLRNGCTYNTITQGLL 487



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 88/278 (31%), Positives = 156/278 (56%), Gaps = 4/278 (1%)

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           S N ++D LCKE KV +A+++  +  +G  + DV++Y  + +G CL    ++A++V   M
Sbjct: 233 SLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMM 292

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           V  G   N+ +YN ++ GY +  +I++A   F EM +++   + +TY+T++HG   VG +
Sbjct: 293 VRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRL 352

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           + A  +F+ MV  G +P++ TY+ ++  LCK   +  A+ + + + G    P+   YN+ 
Sbjct: 353 QDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIA 412

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           I G+C  G++E A +    +     +P+V T+NI+IR  C  G ++   +LF +M    C
Sbjct: 413 IDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENGC 472

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
           L N  TYN +   +    K+     A +LL EM+ RGF
Sbjct: 473 LRNGCTYNTITQGLLQNNKTSR---AIQLLEEMLARGF 507



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 144/283 (50%), Gaps = 3/283 (1%)

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           DV +  ++ N +C + R + AL VL +++  G  P+  T+  +++G    G+I EA   F
Sbjct: 90  DVYTLTIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVF 149

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
            +M     + +VVTY T+++G     ++  A N+F  M+  G+ P + TYN++I  LC  
Sbjct: 150 DKMVGEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNL 209

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
              ++   +  EMV    MPN  + N+V+  LC  G++  A + V  M     EP+V TY
Sbjct: 210 CEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTY 269

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
             L+   C   E++  +++F+ M    C+ N+ +YN LI+     ++ D    A  L  E
Sbjct: 270 AALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDK---AMYLFEE 326

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           M  +  +P   T++ +++GL  +G    A  +      CG++P
Sbjct: 327 MCRQELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIP 369



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 138/262 (52%), Gaps = 1/262 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+A + + +    + D AVK+F  M  +GC  ++ S+NT+++  CK ++++KA  L
Sbjct: 264 PDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYL 323

Query: 196 FK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F+ + R +   + ++Y+ + +G C V R   A+ +  EMV  G  PNL TY+I+L    +
Sbjct: 324 FEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCK 383

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
             ++ EA      ++    + DV  Y   + G    G+++ AR++F  +   G+ P V T
Sbjct: 384 NHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWT 443

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           +N MI+ LCK+  ++ A  +F EM   G + N  TYN + +GL    +  RA++ +  M 
Sbjct: 444 HNIMIRGLCKRGLLDEASKLFREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQLLEEML 503

Query: 375 DDECEPNVQTYNILIRYFCDAG 396
                 +V T  +L++   D G
Sbjct: 504 ARGFSADVSTTALLVKMLSDDG 525



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 80/183 (43%), Gaps = 6/183 (3%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           S+  H +    RL+D      L + M +    P   T++I+ +      +   A+ +  +
Sbjct: 340 STLIHGLCHVGRLQD---AIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKA 396

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVK 221
           +        +  +N  +D +C+   +E A +LF     RG  + DV ++N++  G C   
Sbjct: 397 IEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRG-LQPDVWTHNIMIRGLCKRG 455

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
             ++A ++ +EM + G   N  TYN + +G  +  +   A +   EM  R    DV T  
Sbjct: 456 LLDEASKLFREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQLLEEMLARGFSADVSTTA 515

Query: 282 TIV 284
            +V
Sbjct: 516 LLV 518



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/172 (20%), Positives = 83/172 (48%), Gaps = 5/172 (2%)

Query: 103 PSSFDHAIDLAARLRDYR--TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P+   ++I L    +++R      L+  ++  +L P  + + I  +    AG  + A  +
Sbjct: 369 PNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDL 428

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWC 218
           F ++   G +  + + N ++  LCK   +++A  LF+     G  + +  +YN I  G  
Sbjct: 429 FSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLR-NGCTYNTITQGLL 487

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
              +T++A+++L+EM+ RG + +++T  +++K     G  +   +   E  +
Sbjct: 488 QNNKTSRAIQLLEEMLARGFSADVSTTALLVKMLSDDGLDQSVKQILCEFMR 539


>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 112/391 (28%), Positives = 187/391 (47%), Gaps = 5/391 (1%)

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQ-KTFAIIAERYVSAGKADRA 157
           Y+H+ S     I    +   + T  +L+H +       T+ + + ++   YV +   D +
Sbjct: 55  YSHAQSLLLQVISGKIQ-SQFFTSSSLLHYVTESETSETKSRLYEVMINAYVQSQSLDSS 113

Query: 158 VKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGW 217
           +  F  M + G     N FN +L  +       + +  F   + K   DV S+ ++  G 
Sbjct: 114 ISYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWRFFNESKIKVDLDVYSFGIVIKGC 173

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           C      K+ ++L E+ + G +PN+  Y  ++ G  + G+IE+A   F EM K     + 
Sbjct: 174 CEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFGLVANE 233

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
            TYT ++HG    G  K+   +++ M   GV P++ TYN ++   CK    ++A  +F+E
Sbjct: 234 WTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDE 293

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M  +G   N  TYN +I GLC   +   A + + +MK D   PN+ TYN LI  FC  G+
Sbjct: 294 MRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGK 353

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           + + L L   + S    P+L TYNIL+S  F +K   D   AGK++ EM +RG  P K T
Sbjct: 354 LGKALSLCRDLKSRGLSPSLVTYNILVSG-FCKK--GDTSGAGKVVKEMEERGIKPSKIT 410

Query: 458 FNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           +  +++    + N   A ++       G  P
Sbjct: 411 YTILIDTFARMDNMEKAIQLRSPMEELGLTP 441



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 174/375 (46%), Gaps = 6/375 (1%)

Query: 90  FNILSYHPTYAHSPSS--FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
           F++L     +  SP+   +   ID   +  +      L   M    L   + T+ ++   
Sbjct: 183 FDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFGLVANEWTYTVLIHG 242

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKAD 206
               G   +  +++  M E G   +L ++N +++  CK+ + + A+ LF   R +    +
Sbjct: 243 LFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCN 302

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           +++YN +  G C   + N+A +V+ +M   G+NPNL TYN ++ G+   G++ +A     
Sbjct: 303 IVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCR 362

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           ++K R     +VTY  +V GF   G+   A  V   M   G+ PS  TY  +I    + D
Sbjct: 363 DLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMD 422

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
           ++E AI +   M   G  P+  TY+V+I G C  G+M  A      M   + EPN   YN
Sbjct: 423 NMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYN 482

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            ++  +C  G   R L LF +M      PN+ +Y  +I  +   +KS +   A  L+ +M
Sbjct: 483 TMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERKSKE---AEGLVEKM 539

Query: 447 VDRGFMPRKFTFNRV 461
           +D G  P     N +
Sbjct: 540 IDTGIDPSDSILNLI 554



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 146/296 (49%), Gaps = 3/296 (1%)

Query: 103 PSSFDHAIDLAARLRDYRT--VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P+ + +   +    +D RT   + L   M+   +     T+  +        KA+ A K+
Sbjct: 266 PNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKV 325

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCL 219
              M   G   +L ++NT++D  C   K+ KA +L +  + +     +++YN++ +G+C 
Sbjct: 326 MDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCK 385

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
              T+ A +V+KEM +RG+ P+  TY I++  + R   +E+A +    M++     DV T
Sbjct: 386 KGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHT 445

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y+ ++HGF + G++  A  +F  MV   + P+   YN M+   CK+ S   A+ +F EM 
Sbjct: 446 YSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREME 505

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
            K   PN  +Y  +I  LC   + + A   V +M D   +P+    N++ R   D+
Sbjct: 506 EKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDTGIDPSDSILNLISRAKNDS 561


>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 665

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 107/388 (27%), Positives = 180/388 (46%), Gaps = 11/388 (2%)

Query: 79  LWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQ 138
           L   ALK  +        PT       ++H +D       ++ +  +   MK     P  
Sbjct: 129 LAEQALKMFYRIREFGCQPTV----KIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNV 184

Query: 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV 198
            T+ I+ +      + D A K+ + M   GC   + S+ T++  + K  KVE+A  L   
Sbjct: 185 YTYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEAREL--- 241

Query: 199 FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
              +F+ +V  YN + NG+C   +  +   +L +MV++G++PN+ TY+ V+      G +
Sbjct: 242 -SIRFQPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNV 300

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           E A   + +M  R C  +V T+T+++ G+ + G +  A N+++ M   G  P+V  YN +
Sbjct: 301 ELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTL 360

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           I  LC    +  A+ V  +M   G  PN +TY  +I G    G++  A E   +M  + C
Sbjct: 361 IHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGC 420

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
            PNV  Y  ++   C +    +   L EKM +  C PN  T+N  I  +    + +    
Sbjct: 421 IPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVE---C 477

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
           A  L  +M   G  P   T+N VL+GLL
Sbjct: 478 AINLFCQMEQYGCSPNIKTYNEVLDGLL 505



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/398 (22%), Positives = 172/398 (43%), Gaps = 74/398 (18%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           S ++  I+   R    + V+ L+ +M    + P   T++ +       G  + A+ ++  
Sbjct: 250 SVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAVWAK 309

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKR 222
           M   GC  ++ +F +++       +V +A N++ ++    F+ +V++YN + +G C   +
Sbjct: 310 MFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGK 369

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI------------------------ 258
             +A+ V  +M   G +PN++TY  ++ G+ +AG +                        
Sbjct: 370 MGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTS 429

Query: 259 -----------EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
                       +AW    +M    C  + VT+ T + G    G ++ A N+F  M   G
Sbjct: 430 MVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYG 489

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
             P++ TYN ++  L K++ ++ A+ +  EM  KG   N  TYN +  G C+ G+ E AL
Sbjct: 490 CSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEAL 549

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG---------------- 411
           + +G+M     +P+  TYN L   +C  G+++  ++L +K+ +G                
Sbjct: 550 KLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQLLDKLSAGGKWVPEVAAYTSLLWG 609

Query: 412 ---------------------VCLPNLDTYNILISSMF 428
                                +CL N  T+N L+  +F
Sbjct: 610 ICNQIGVEEAVLYLDKMLNEGICL-NAATWNALVRGLF 646



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 125/290 (43%), Gaps = 33/290 (11%)

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           +L++M   G++ +   +  V+  Y R G  E+A + F  +++  C+  V  Y  ++    
Sbjct: 101 LLQQMKLEGISCSEDLFINVINTYRRVGLAEQALKMFYRIREFGCQPTVKIYNHLLDAML 160

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG------ 342
                +    ++  M   G  P+V TYN +++ LCK + V+ A  +  EM  KG      
Sbjct: 161 SENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVV 220

Query: 343 ------------------------YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
                                   + PN + YN +I G C   +++     +G+M +   
Sbjct: 221 SYTTVISSMSKLGKVEEARELSIRFQPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGI 280

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
           +PNV TY+ +I      G +E  L ++ KM    C PN+ T+  L+   F+R +   +L 
Sbjct: 281 DPNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGR---VLE 337

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           A  +   M + GF P    +N +++GL   G  G A  +     R G  P
Sbjct: 338 ALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSP 387



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 108/231 (46%), Gaps = 8/231 (3%)

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY I+++   R   ++       +MK          +  +++ +  VG  ++A  +F  +
Sbjct: 81  TYQIMIEKLGRECDVDGVQYLLQQMKLEGISCSEDLFINVINTYRRVGLAEQALKMFYRI 140

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G  P+V  YN ++  +  ++  +    ++  M   G  PN  TYN++++ LC    +
Sbjct: 141 REFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCKNNRV 200

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A + +  M +  CEP+V +Y  +I      G++E   EL  +       PN+  YN L
Sbjct: 201 DGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEARELSIRFQ-----PNVSVYNAL 255

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           I+      K  ++ +   LL +MV++G  P   T++ V++ L  IGN  LA
Sbjct: 256 INGFCREYKVKEVFL---LLGQMVEKGIDPNVITYSTVISSLSGIGNVELA 303


>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 347

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 177/347 (51%), Gaps = 6/347 (1%)

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186
             M S+  GP   T+  +       G    A ++   M   GC  ++ ++  ++D  CKE
Sbjct: 3   ESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKE 62

Query: 187 KKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
            ++E+A N+     GK  A + + YN + +  C  ++   AL +  +M  +G  P++ T+
Sbjct: 63  GRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTF 122

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           N ++ G  +  + EEA   + +M       + +TY T++H F   G ++ A  + + M+ 
Sbjct: 123 NSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLF 182

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G      TYN +I+ LC+  ++E  + +FE+M+ KG  PN+ + N++I GLC TG ++ 
Sbjct: 183 RGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQH 242

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG-SGVCLPNLDTYNILI 424
           ALEF+  M      P++ TYN LI   C  G  +  L LF+K+   G+C P+  TYN LI
Sbjct: 243 ALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGIC-PDAITYNTLI 301

Query: 425 SSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
           S        DD   A  LL   VD GF+P + T+  +++  +  G+Q
Sbjct: 302 SWHCKEGMFDD---AHLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQ 345



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 163/313 (52%), Gaps = 2/313 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L++ M+     P   T+ I+ +R+   G+ + A  +   M   G   +   +N ++  LC
Sbjct: 36  LMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALC 95

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K++KV+ A N+F     K  K D+ ++N +  G C V +  +AL + ++M+  G+  N  
Sbjct: 96  KDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTI 155

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN ++  + R G ++EA +   +M  R C +D +TY  ++      G I++   +F+ M
Sbjct: 156 TYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDM 215

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           ++ G+ P+  + N +I  LC+  ++++A+    +M+ +G  P+  TYN +I GLC TG  
Sbjct: 216 MSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRA 275

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + AL    +++ +   P+  TYN LI + C  G  +    L  +      +PN  T+ IL
Sbjct: 276 QEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYIL 335

Query: 424 ISSMFVRKKSDDL 436
           +S+ F+++   + 
Sbjct: 336 VSN-FIKEGDQEF 347



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 91/285 (31%), Positives = 138/285 (48%), Gaps = 41/285 (14%)

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
           + M+  G  P++ TYN ++ G  + G +  A     EM+ + CE +V+TYT ++  F   
Sbjct: 3   ESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKE 62

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           G ++ ARNV D M   G+  +   YN +I  LCK + V++A+ +F +M  KG  P+  T+
Sbjct: 63  GRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTF 122

Query: 351 NVVIRGLCHT-----------------------------------GEMERALEFVGRMKD 375
           N +I GLC                                     G M+ AL+ V  M  
Sbjct: 123 NSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLF 182

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
             C  +  TYN LI+  C AG IE+GL LFE M S    PN  + NILI+ +    ++ +
Sbjct: 183 RGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLC---RTGN 239

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           +  A + L +M+ RG  P   T+N ++NGL      G A+E L L
Sbjct: 240 IQHALEFLRDMIHRGLTPDIVTYNSLINGLC---KTGRAQEALNL 281


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 112/391 (28%), Positives = 198/391 (50%), Gaps = 18/391 (4%)

Query: 85  KALHFFNILSYH---PTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTF 141
           +AL F + ++ H   PT  H+ ++   A+    R+ D    W +   MK     P   T+
Sbjct: 316 EALDFISEMTRHGVLPT-VHTFTAPIVALCDMGRIED---AWKIFIDMKKKGCKPNVYTY 371

Query: 142 AIIAERYVSAGKADR-AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR 200
             +    +S  +  R A+ +F  M   G   +  ++N ++++L +  +++ A  +F +  
Sbjct: 372 TSL----ISGQRVSRMAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMM- 426

Query: 201 GKFKA--DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
           GK     +  SYN +  G+C +  T KA+ +L  M+     P L TYNI++KGY  +G  
Sbjct: 427 GKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDT 486

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           + A R    MK   C+ D  +YT ++ GF  + +++ A  +F+ M++ G+ P+  TY A+
Sbjct: 487 DVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTAL 546

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           I   CK + ++ A  + E M   G  PN  TYNV+I GL        A E    M +++ 
Sbjct: 547 ISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKI 606

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
            P+V TY+ +I   C+ G I   LE+F KM    CLPNL TY+ LI ++    + ++   
Sbjct: 607 SPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEE--- 663

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
           A ++  E+  +G +P + T+ +++   ++ G
Sbjct: 664 AEEMFSELKKQGLIPDEVTYVKMIEVCVMSG 694



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 157/347 (45%), Gaps = 36/347 (10%)

Query: 117 RDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSF 176
           R  R    L HRM    + P   T+  +    +   + D A+ +F  M +HGC  + +S+
Sbjct: 379 RVSRMAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSY 438

Query: 177 NTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLK---- 231
           N ++   C     EKA ++   + +G+    +++YN+I  G+C    T+ A+ VL+    
Sbjct: 439 NELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKA 498

Query: 232 -------------------------------EMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
                                          EM+DRGL PN  TY  ++ GY +  +++ 
Sbjct: 499 NGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDC 558

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
           A R    MK+  C  +V TY  ++HG         A  +   M+   + P V TY+ +I 
Sbjct: 559 AARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVIN 618

Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
            LC   ++  A+ +F +MV  G +PN  TY+ +I+ L   G +E A E    +K     P
Sbjct: 619 GLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIP 678

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           +  TY  +I     +G+++R  +   +M +  C P L TY++LI  +
Sbjct: 679 DEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGL 725



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 177/411 (43%), Gaps = 25/411 (6%)

Query: 84  LKALHFFNILSYHPTYAHSPSSFDHAID--LAARLRDYRTVWTLVHRMKSLSLGPTQKTF 141
           ++AL F   LS   ++ + P +F       L +R R        +H +KS S        
Sbjct: 118 VRALEFLLFLSREHSHKYGPDTFAKVAMRLLESRDRPAAVGRARIHMIKSCS-------- 169

Query: 142 AIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFR 200
                   +  +  +A+       + G +  L ++ T+L  L K        + + ++ R
Sbjct: 170 --------NKAEMTQALNYLDMFSQRGPKMGLFTYTTLLIQLNKLNMTSTVMDRYHQILR 221

Query: 201 GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
              + +++ YN + N  C       A  ++ ++   G+ P+  TY  ++ GY R   ++ 
Sbjct: 222 EGLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDS 281

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
           A+  F  M +  CE +  TY+T+++G    G +  A +    M   GVLP+V T+ A I 
Sbjct: 282 AFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIV 341

Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
            LC    +E+A  +F +M  KG  PN  TY  +I G      M  A+    RM  D   P
Sbjct: 342 ALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISGQ-RVSRM--AIGLFHRMSRDGVVP 398

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAG 440
           N  TYN L+    +  EI+  L +F  MG   CLPN  +YN LI        ++    A 
Sbjct: 399 NTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEK---AM 455

Query: 441 KLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
            +L  M+     P   T+N ++ G    G+  +A  +L L    G  P ++
Sbjct: 456 SMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEW 506



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 96/407 (23%), Positives = 169/407 (41%), Gaps = 59/407 (14%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           AL  FN++  H    ++ SS++  I     + D     +++  M      PT  T+ II 
Sbjct: 419 ALIVFNMMGKHGCLPNT-SSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIII 477

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FK 204
           + Y  +G  D A+++   M  +GC+    S+  ++   CK  K+E A  +F     +   
Sbjct: 478 KGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLC 537

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
            + ++Y  + +G+C  ++ + A  +L+ M   G  PN+ TYN+++ G  +      A   
Sbjct: 538 PNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEEL 597

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
              M + K   DVVTY+T+++G    G I  A  +F+ MV  G LP++ TY+++IQ L +
Sbjct: 598 CKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQ 657

Query: 325 KDSVENAILVFEE-----------------------------------MVGKGYMPNSTT 349
           +  VE A  +F E                                   M+  G  P   T
Sbjct: 658 EGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQT 717

Query: 350 YNVVIRGLCHTGEMERALEF----------------------VGRMKDDECEPNVQTYNI 387
           Y+V+I+GL +     + +                          ++ + + E + Q Y+ 
Sbjct: 718 YDVLIKGLQNEMVYHKLVALPNAASTSTFDDQIINKDVISVLSSKLAELDFELSRQLYDA 777

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
           L+     +G       L+  M S    PN DTY   + S+    K D
Sbjct: 778 LLSRLSRSGRWFEANNLYRSMVSQSQCPNQDTYKHFLISLLRALKVD 824



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 145/362 (40%), Gaps = 58/362 (16%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           + + M    L P + T+  +   Y    K D A ++   M   GCR ++ ++N ++  L 
Sbjct: 527 MFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLT 586

Query: 185 KEKKVEKAYNLFKV-FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K+     A  L KV    K   DV++Y+ + NG C       ALE+  +MV  G  PNL 
Sbjct: 587 KQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLH 646

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY+ +++   + G++EEA   F E+KK+    D VTY  ++    + G++ RA +    M
Sbjct: 647 TYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEM 706

Query: 304 VNGG-------------------------VLPSVAT------------------------ 314
           +N G                          LP+ A+                        
Sbjct: 707 INAGCQPTLQTYDVLIKGLQNEMVYHKLVALPNAASTSTFDDQIINKDVISVLSSKLAEL 766

Query: 315 --------YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
                   Y+A++  L +      A  ++  MV +   PN  TY   +  L    +++ A
Sbjct: 767 DFELSRQLYDALLSRLSRSGRWFEANNLYRSMVSQSQCPNQDTYKHFLISLLRALKVDLA 826

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
           ++    M D  CE ++  Y  LI   C     +    +FEKM S     +   + ILI+ 
Sbjct: 827 MDVFKHMSDQRCELHLTGYKELICTLCQLHRRKEARFVFEKMLSRALNADEIVWTILING 886

Query: 427 MF 428
           + 
Sbjct: 887 LL 888



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 125/308 (40%), Gaps = 19/308 (6%)

Query: 86  ALHFFNILSYHPTYA--HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAI 143
           AL  FN +  H      H+ SS   A+    R+ +   +++    +K   L P + T+  
Sbjct: 629 ALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFS---ELKKQGLIPDEVTYVK 685

Query: 144 IAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GK 202
           + E  V +GK DRA      M   GC+ +L +++ ++  L  E    K   L        
Sbjct: 686 MIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGLQNEMVYHKLVALPNAASTST 745

Query: 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262
           F   +I+ +VI+         +  L  L   + R L      Y+ +L    R+G+  EA 
Sbjct: 746 FDDQIINKDVIS-------VLSSKLAELDFELSRQL------YDALLSRLSRSGRWFEAN 792

Query: 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322
             +  M  +    +  TY   +       ++  A +VF  M +      +  Y  +I  L
Sbjct: 793 NLYRSMVSQSQCPNQDTYKHFLISLLRALKVDLAMDVFKHMSDQRCELHLTGYKELICTL 852

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
           C+    + A  VFE+M+ +    +   + ++I GL   G  +  +EF+  M+ +   P+ 
Sbjct: 853 CQLHRRKEARFVFEKMLSRALNADEIVWTILINGLLGAGYKDLCMEFLHIMETNRRNPSS 912

Query: 383 QTYNILIR 390
               IL R
Sbjct: 913 HARTILAR 920


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 120/437 (27%), Positives = 205/437 (46%), Gaps = 26/437 (5%)

Query: 63  PSLH-WTPQLVDQIIKRLWNHALK---ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRD 118
           PSL    P L    +  L+   L    AL FFN ++  P + H+  S+   +++  R R 
Sbjct: 57  PSLRKLLPSLTPSHVSSLFAFNLDPQTALSFFNWIALRPGFKHNVHSYSSMLNILIRAR- 115

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG---CRQSLNS 175
                          LG  +K    + +   S       +++F  M+  G    + +L  
Sbjct: 116 --------------LLGVAEKIRISMIKSCCSIEDVLFVLEVFRKMNADGEFKFKPTLRC 161

Query: 176 FNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           +NTIL  L K   +++   ++ ++   +   ++ ++N + NG+C +    +A     ++V
Sbjct: 162 YNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIV 221

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
             GL+P+  TY  ++ G+ R   ++ A+  FL M ++ C+ + V+YT ++HG    G I 
Sbjct: 222 QAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRIN 281

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
            A  +F  M      P+V TY  +I  L        A+ +F EM  KG  PN  TY V+I
Sbjct: 282 EALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLI 341

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
            GLC   +M+ A + +  M +    P+V TYN LI  +C  G I+   E+ + M S  C 
Sbjct: 342 DGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCG 401

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           PN  TYN LI  +  ++K      A  LL +M++R   P   T+N +++G   + +   A
Sbjct: 402 PNTRTYNELICGLCKKRKVHK---AMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESA 458

Query: 475 KEILRLQSRCGRLPRQF 491
             +L L +  G +P Q+
Sbjct: 459 YRLLSLMNENGLVPDQW 475



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/320 (29%), Positives = 165/320 (51%), Gaps = 4/320 (1%)

Query: 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVIS 209
           AG+ + A+K+F  M E  C  ++ ++  ++  L    +  +A NLF   + K  + +V +
Sbjct: 277 AGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHT 336

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           Y V+ +G C   + ++A ++L EM ++GL P++ TYN ++ GY + G I++A+     M+
Sbjct: 337 YTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLME 396

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
              C  +  TY  ++ G     ++ +A  + + M+   + PS+ TYN++I   CK + +E
Sbjct: 397 SNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLE 456

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
           +A  +   M   G +P+  TY+V I  LC  G +E A      +K    + N   Y  LI
Sbjct: 457 SAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALI 516

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
             +C  G+I+    L E+M +  CLPN  TYN+LI  +   KK  +   A  L+ +M+  
Sbjct: 517 DGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKE---ASSLVAKMLTM 573

Query: 450 GFMPRKFTFNRVLNGLLLIG 469
           G  P   T+  ++  +L  G
Sbjct: 574 GVKPTVVTYTILIGEMLKDG 593



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 175/371 (47%), Gaps = 10/371 (2%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L + MK     P   T+ ++ +      K D A K+   M E G   S+ ++N ++D  C
Sbjct: 321 LFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYC 380

Query: 185 KEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           KE  ++ A+ +  +        +  +YN +  G C  ++ +KA+ +L +M++R L+P+L 
Sbjct: 381 KEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLI 440

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN ++ G  +   +E A+R    M +     D  TY+  +      G ++ A  +FD +
Sbjct: 441 TYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSV 500

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              GV  +   Y A+I   CK   ++ A  + E M+    +PNS TYNV+I GLC   +M
Sbjct: 501 KAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKM 560

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A   V +M     +P V TY ILI      G  +  L++F  M S    P++ TY   
Sbjct: 561 KEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAF 620

Query: 424 ISSMFVR---KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           + + F +   ++ DD++       +M + G +P   T+  +++G   +G    A + L+ 
Sbjct: 621 LHAYFSQGMLEEVDDVIA------KMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKC 674

Query: 481 QSRCGRLPRQF 491
               G  P  +
Sbjct: 675 MVDTGCKPSLY 685



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 99/390 (25%), Positives = 183/390 (46%), Gaps = 17/390 (4%)

Query: 116 LRDYRTV------WTLVHRMKSLSL-------GPTQKTFAIIAERYVSAGKADRAVKIFL 162
           LR Y T+      + L+  MK++ L        P   TF  +   Y   G    A     
Sbjct: 159 LRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYAS 218

Query: 163 SMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVK 221
            + + G      ++ +++   C+ K V+ AY +F +   K  + + +SY  + +G C   
Sbjct: 219 KIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAG 278

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
           R N+AL++  +M +    P + TY +++     +G+  EA   F EMK++ CE +V TYT
Sbjct: 279 RINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYT 338

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
            ++ G     ++  AR +   M   G++PSV TYNA+I   CK+  +++A  + + M   
Sbjct: 339 VLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESN 398

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
              PN+ TYN +I GLC   ++ +A+  + +M + +  P++ TYN LI   C   ++E  
Sbjct: 399 SCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESA 458

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
             L   M     +P+  TY++ I ++    + ++   AG L   +  +G    +  +  +
Sbjct: 459 YRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEE---AGTLFDSVKAKGVKANEVIYTAL 515

Query: 462 LNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           ++G   +G   +A  +L        LP  +
Sbjct: 516 IDGYCKVGKIDVAYSLLERMLNDACLPNSY 545



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 155/339 (45%), Gaps = 36/339 (10%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++  M    L P+  T+  + + Y   G  D A +I   M  + C  +  ++N ++  LC
Sbjct: 356 MLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLC 415

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K++KV KA  L  K+   K    +I+YN + +G C V     A  +L  M + GL P+  
Sbjct: 416 KKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQW 475

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY++ +    + G++EEA   F  +K +  + + V YT ++ G+  VG+I  A ++ + M
Sbjct: 476 TYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERM 535

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSV----------------------------------- 328
           +N   LP+  TYN +I+ LCK+  +                                   
Sbjct: 536 LNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAF 595

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           ++A+ VF  MV  GY P+  TY   +      G +E   + + +M ++   P++ TY +L
Sbjct: 596 DHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVL 655

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           I  +   G   R  +  + M    C P+L   +ILI ++
Sbjct: 656 IDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNL 694



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 174/405 (42%), Gaps = 24/405 (5%)

Query: 102 SPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           SPS  +++  I    ++ D  + + L+  M    L P Q T+++  +     G+ + A  
Sbjct: 436 SPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGT 495

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWC 218
           +F S+   G + +   +  ++D  CK  K++ AY+L  ++       +  +YNV+  G C
Sbjct: 496 LFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLC 555

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
             K+  +A  ++ +M+  G+ P + TY I++    + G  + A + F  M     + DV 
Sbjct: 556 KEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVC 615

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TYT  +H +   G ++   +V   M   G+LP + TY  +I    +      A    + M
Sbjct: 616 TYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCM 675

Query: 339 VGKGYMPNSTTYNVVIRGLCH------------------TGEMERALEFVGRMKDDECEP 380
           V  G  P+    +++I+ L H                  T E E AL+   +M +  C  
Sbjct: 676 VDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCTI 735

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAG 440
           +V  Y  LI  FC    +E    L   M      P+ D YN L+       K      A 
Sbjct: 736 DVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCC---KLGVYAEAV 792

Query: 441 KLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
           +L+  MV+ G +P   ++  ++ GL + G+   AK +      CG
Sbjct: 793 RLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCG 837



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 158/349 (45%), Gaps = 27/349 (7%)

Query: 103 PSSFDH--AIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P+S+ +   I+   + +  +   +LV +M ++ + PT  T+ I+    +  G  D A+K+
Sbjct: 542 PNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKV 601

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCL 219
           F  M   G +  + ++   L     +  +E+  ++  K+       D+++Y V+ +G+  
Sbjct: 602 FNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYAR 661

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE------------------A 261
           +  T++A + LK MVD G  P+L   +I++K      +++E                  A
Sbjct: 662 LGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIA 721

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
            + F +M +  C IDV  Y  ++ GF     ++ A+ +   M   G+ PS   YN+++  
Sbjct: 722 LKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDC 781

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE-FVGRMKDDECEP 380
            CK      A+ + + MV  G +P   +Y +++ GL   G  E+A   F G +    C  
Sbjct: 782 CCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLS---CGY 838

Query: 381 NVQ--TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           N     + +LI        ++   EL + M    C PN  TY++LI  +
Sbjct: 839 NYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKGCQPNPLTYSLLIEGL 887


>gi|296089633|emb|CBI39452.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 148/541 (27%), Positives = 239/541 (44%), Gaps = 70/541 (12%)

Query: 8   PPKN----HLHFFCIYRGLSPLTTTSPAPLPPAAADPAALASLILTSTDP--RTLTQTLH 61
           PP N    H  F        P+  T    L  A     + A   L +T+P    L  +L 
Sbjct: 28  PPLNSLLIHTQFISSISSQQPIKITPNEGLKAATKTKRSQAMARLINTEPWSHELQSSLA 87

Query: 62  --CPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDY 119
              PSL  T  L  Q ++ +   A KALHFF  +     + H+  S+   I++  R R+ 
Sbjct: 88  ELAPSLSKTTVL--QTLQLIRTPA-KALHFFRWVEAK-GFTHNEQSYFLMIEILGRSRNL 143

Query: 120 RTVWTLVHRMKSLSLGPTQ---KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSF 176
                 V  ++  S G  +   + F  +   Y  AG    ++K+F +M E G   S+ +F
Sbjct: 144 NAARNFVFSIEKKSGGAVKLGDRFFNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTF 203

Query: 177 NTILDLLCKEKKVEKAYNLFK-----------------VFRG------------------ 201
           N++L ++ K  +   A  LF                  + RG                  
Sbjct: 204 NSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMS 263

Query: 202 KFKA--DVISYNVIANGWCLVKRTNKALEVLKEMVDRG--LNPNLTTYNIVLKGYFRAGQ 257
           +FK   DV++YN + +G C   +   A  V+K MV +   L+PN+ TY  +++GY     
Sbjct: 264 RFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQD 323

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV-NGGVLPSVATYN 316
           + EA     EM  R  + + +TY T++ G     ++ + + + +GMV +GG +P   T N
Sbjct: 324 MAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLN 383

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
            +I+  C    +E A  VFE+M      P+S TY+V++R LC  G+  RA EF   + + 
Sbjct: 384 TLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEK 443

Query: 377 E-------CEPNVQTYNILIRYFCDAGEIERGLELFEK-MGSGVCLPNLDTYNILISSMF 428
           E       C+P V  YN +  Y C  G+ ++   +F + M  G   P   +Y  LI    
Sbjct: 444 EILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDP--PSYKTLILG-H 500

Query: 429 VRKKSDDLLVAG-KLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
            R+ + +   AG  LL+ M+ R F+P   T+  +++GLL  G+  LA + L    +   L
Sbjct: 501 CREGTPE---AGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHL 557

Query: 488 P 488
           P
Sbjct: 558 P 558



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 153/356 (42%), Gaps = 47/356 (13%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   TF I+   +      D     F  M    C   + ++NT++D LC+  KV+ A+N+
Sbjct: 234 PDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNV 293

Query: 196 FKVFRGK---FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
            K    K      +V++Y  +  G+C+ +   +AL +L EMV RGL PN  TYN +++G 
Sbjct: 294 VKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGL 353

Query: 253 FRA------------------------------------GQIEEAWRFFLEMKKRKCEID 276
             A                                    G++EEA+  F +M + + + D
Sbjct: 354 CEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPD 413

Query: 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL-------PSVATYNAMIQVLCKKDSVE 329
             TY+ +V      G+ +RA   FD +    +L       P VA YN M + LC     +
Sbjct: 414 SATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTK 473

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
            A  VF +++ +G   +  +Y  +I G C  G  E   + +  M   +  P+ +TY ++I
Sbjct: 474 KAERVFRQLMKRGTQ-DPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMI 532

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
                 G+     +  EKM     LP    ++ +++++  +  + +     KL++E
Sbjct: 533 DGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILAALVEKGCAHESASLVKLMLE 588



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 77/355 (21%), Positives = 151/355 (42%), Gaps = 25/355 (7%)

Query: 117 RDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM-HEHGCRQSLNS 175
           +D     +L+  M S  L P + T+  + +    A K D+  +I   M  + G      +
Sbjct: 322 QDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCT 381

Query: 176 FNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
            NT++   C   K+E+A+++F K+   + + D  +Y+V+    C      +A E   E+ 
Sbjct: 382 LNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELA 441

Query: 235 DR-------GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
           ++       G  P +  YN + +     G+ ++A R F ++ KR  + D  +Y T++ G 
Sbjct: 442 EKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQ-DPPSYKTLILGH 500

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
              G  +   ++   M+    +P   TY  MI  L KK     A    E+M+   ++P +
Sbjct: 501 CREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTT 560

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV----QTYNILIRYFCDAGEIERGLE 403
             ++ ++  L   G    +   V  M +     N+     T   L+ + C + ++    +
Sbjct: 561 AIFHSILAALVEKGCAHESASLVKLMLERRIRQNIDLSTHTMEELVSFLCQSRKLLEAQK 620

Query: 404 L----FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
           +     EK  S     ++D  + +IS +    K+  +  A  L  E+V++G   R
Sbjct: 621 MLLFSLEKRQS----VDIDMCSTVISGLC---KAHKVSEAFALYYELVEKGMQHR 668


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/360 (29%), Positives = 185/360 (51%), Gaps = 6/360 (1%)

Query: 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH 167
           H      RL D + V  L   + S  + P   T+  +   Y   G    A+++   M   
Sbjct: 361 HGFVTHGRLDDAKAV--LSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNK 418

Query: 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKA 226
           GC+ ++ S+  ++D  CK  K+++AYN+         K + + +N + + +C   R  +A
Sbjct: 419 GCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEA 478

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
           +E+ +EM  +G  P++ T+N ++ G     +I+ A     +M       + VTY T+++ 
Sbjct: 479 VEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINA 538

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
           F   GEIK AR + + MV  G      TYN++I+ LC+   V+ A  +FE+M+  G+ P+
Sbjct: 539 FLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPS 598

Query: 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
           + + N++I GLC +G +E A+EF   M      P++ T+N LI   C AG IE GL +F 
Sbjct: 599 NISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFR 658

Query: 407 KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
           K+ +    P+  T+N L+S +    K   +  A  LL E ++ GF+P   T++ +L  ++
Sbjct: 659 KLQAEGIPPDTVTFNTLMSWLC---KGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSII 715



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 163/311 (52%), Gaps = 1/311 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++H M++    P   ++ I+ + +   GK D A  +   M   G + +   FN ++   C
Sbjct: 411 VLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFC 470

Query: 185 KEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           KE ++ +A  +F+   R   K DV ++N + +G C V     AL +L++M+  G+  N  
Sbjct: 471 KEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTV 530

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN ++  + R G+I+EA +   EM  +   +D +TY +++ G    GE+ +AR++F+ M
Sbjct: 531 TYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKM 590

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           +  G  PS  + N +I  LC+   VE A+   +EMV +G  P+  T+N +I GLC  G +
Sbjct: 591 LRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRI 650

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           E  L    +++ +   P+  T+N L+ + C  G +     L ++      +PN  T++IL
Sbjct: 651 EDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSIL 710

Query: 424 ISSMFVRKKSD 434
           + S+  ++  D
Sbjct: 711 LQSIIPQETLD 721



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/438 (25%), Positives = 200/438 (45%), Gaps = 46/438 (10%)

Query: 87  LHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAE 146
           L   N+ S  PT+     S++  +++      ++    + + M S  + PT  TF ++ +
Sbjct: 170 LEMRNVYSCEPTF----KSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMK 225

Query: 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKA 205
            + +  + D A+ +   M +HGC  +   + T++  L K  +V +A  L + +F      
Sbjct: 226 AFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVP 285

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           D  ++N +  G C   R N+A +++  M+ RG  P+  TY  ++ G  + G+++ A   F
Sbjct: 286 DAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLF 345

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG-GVLPSVATYNAMIQVLCK 324
             + K     ++V + T++HGF   G +  A+ V   MV   G++P V TYN++I    K
Sbjct: 346 YRIPKP----EIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWK 401

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
           +  V  A+ V  +M  KG  PN  +Y +++ G C  G+++ A   +  M  D  +PN   
Sbjct: 402 EGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVG 461

Query: 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM----------------- 427
           +N LI  FC    I   +E+F +M    C P++ T+N LIS +                 
Sbjct: 462 FNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMI 521

Query: 428 -----------------FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
                            F+R+   ++  A KL+ EMV +G    + T+N ++ GL   G 
Sbjct: 522 SEGVVANTVTYNTLINAFLRRG--EIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGE 579

Query: 471 QGLAKEILRLQSRCGRLP 488
              A+ +     R G  P
Sbjct: 580 VDKARSLFEKMLRDGHAP 597



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 176/414 (42%), Gaps = 37/414 (8%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           ++  F+       Y HS   +   I       +++T+  L+ +MK   +   +  F  I 
Sbjct: 94  SMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIM 153

Query: 146 ERYVSAGKADRAVKIFLSMHE-HGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKF 203
             Y  AG   +  ++ L M   + C  +  S+N +L++L      + A N+F  +   K 
Sbjct: 154 RDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKI 213

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
              + ++ V+   +C V   + AL +L++M   G  PN   Y  ++    +  ++ EA +
Sbjct: 214 PPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQ 273

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
              EM    C  D  T+  ++ G      I  A  + + M+  G  P   TY  ++  LC
Sbjct: 274 LLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLC 333

Query: 324 KKDSVENA-----------ILVFEEMV---------------------GKGYMPNSTTYN 351
           K   V+ A           I++F  ++                       G +P+  TYN
Sbjct: 334 KIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYN 393

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
            +I G    G +  ALE +  M++  C+PNV +Y IL+  FC  G+I+    +  +M + 
Sbjct: 394 SLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSAD 453

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
              PN   +N LIS+     K   +  A ++  EM  +G  P  +TFN +++GL
Sbjct: 454 GLKPNTVGFNCLISAFC---KEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGL 504



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 146/331 (44%), Gaps = 39/331 (11%)

Query: 73  DQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAI--DLAARLRDYRTVWTLVHRMK 130
           + +I   W   L  L    +L         P+ + + I  D   +L      + +++ M 
Sbjct: 393 NSLIYGYWKEGLVGLAL-EVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMS 451

Query: 131 SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190
           +  L P    F  +   +    +   AV+IF  M   GC+  + +FN+++  LC+  +++
Sbjct: 452 ADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIK 511

Query: 191 KA------------------YN-LFKVF--RGKFKA---------------DVISYNVIA 214
            A                  YN L   F  RG+ K                D I+YN + 
Sbjct: 512 HALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLI 571

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
            G C     +KA  + ++M+  G  P+  + NI++ G  R+G +EEA  F  EM  R   
Sbjct: 572 KGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGST 631

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
            D+VT+ ++++G    G I+    +F  +   G+ P   T+N ++  LCK   V +A L+
Sbjct: 632 PDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLL 691

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            +E +  G++PN  T++++++ +     ++R
Sbjct: 692 LDEGIEDGFVPNHRTWSILLQSIIPQETLDR 722


>gi|225433712|ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Vitis vinifera]
          Length = 746

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 148/541 (27%), Positives = 239/541 (44%), Gaps = 70/541 (12%)

Query: 8   PPKN----HLHFFCIYRGLSPLTTTSPAPLPPAAADPAALASLILTSTDP--RTLTQTLH 61
           PP N    H  F        P+  T    L  A     + A   L +T+P    L  +L 
Sbjct: 28  PPLNSLLIHTQFISSISSQQPIKITPNEGLKAATKTKRSQAMARLINTEPWSHELQSSLA 87

Query: 62  --CPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDY 119
              PSL  T  L  Q ++ +   A KALHFF  +     + H+  S+   I++  R R+ 
Sbjct: 88  ELAPSLSKTTVL--QTLQLIRTPA-KALHFFRWVEAK-GFTHNEQSYFLMIEILGRSRNL 143

Query: 120 RTVWTLVHRMKSLSLGPTQ---KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSF 176
                 V  ++  S G  +   + F  +   Y  AG    ++K+F +M E G   S+ +F
Sbjct: 144 NAARNFVFSIEKKSGGAVKLGDRFFNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTF 203

Query: 177 NTILDLLCKEKKVEKAYNLFK-----------------VFRG------------------ 201
           N++L ++ K  +   A  LF                  + RG                  
Sbjct: 204 NSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMS 263

Query: 202 KFKAD--VISYNVIANGWCLVKRTNKALEVLKEMVDRG--LNPNLTTYNIVLKGYFRAGQ 257
           +FK D  V++YN + +G C   +   A  V+K MV +   L+PN+ TY  +++GY     
Sbjct: 264 RFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQD 323

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV-NGGVLPSVATYN 316
           + EA     EM  R  + + +TY T++ G     ++ + + + +GMV +GG +P   T N
Sbjct: 324 MAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLN 383

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
            +I+  C    +E A  VFE+M      P+S TY+V++R LC  G+  RA EF   + + 
Sbjct: 384 TLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEK 443

Query: 377 E-------CEPNVQTYNILIRYFCDAGEIERGLELFEK-MGSGVCLPNLDTYNILISSMF 428
           E       C+P V  YN +  Y C  G+ ++   +F + M  G   P   +Y  LI    
Sbjct: 444 EILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDP--PSYKTLILG-H 500

Query: 429 VRKKSDDLLVAG-KLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
            R+ + +   AG  LL+ M+ R F+P   T+  +++GLL  G+  LA + L    +   L
Sbjct: 501 CREGTPE---AGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHL 557

Query: 488 P 488
           P
Sbjct: 558 P 558



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 153/356 (42%), Gaps = 47/356 (13%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   TF I+   +      D     F  M    C   + ++NT++D LC+  KV+ A+N+
Sbjct: 234 PDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNV 293

Query: 196 FKVFRGK---FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
            K    K      +V++Y  +  G+C+ +   +AL +L EMV RGL PN  TYN +++G 
Sbjct: 294 VKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGL 353

Query: 253 FRA------------------------------------GQIEEAWRFFLEMKKRKCEID 276
             A                                    G++EEA+  F +M + + + D
Sbjct: 354 CEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPD 413

Query: 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL-------PSVATYNAMIQVLCKKDSVE 329
             TY+ +V      G+ +RA   FD +    +L       P VA YN M + LC     +
Sbjct: 414 SATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTK 473

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
            A  VF +++ +G   +  +Y  +I G C  G  E   + +  M   +  P+ +TY ++I
Sbjct: 474 KAERVFRQLMKRGTQ-DPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMI 532

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
                 G+     +  EKM     LP    ++ +++++  +  + +     KL++E
Sbjct: 533 DGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILAALVEKGCAHESASLVKLMLE 588



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/289 (21%), Positives = 122/289 (42%), Gaps = 10/289 (3%)

Query: 117 RDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM-HEHGCRQSLNS 175
           +D     +L+  M S  L P + T+  + +    A K D+  +I   M  + G      +
Sbjct: 322 QDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCT 381

Query: 176 FNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
            NT++   C   K+E+A+++F K+   + + D  +Y+V+    C      +A E   E+ 
Sbjct: 382 LNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELA 441

Query: 235 DR-------GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
           ++       G  P +  YN + +     G+ ++A R F ++ KR  + D  +Y T++ G 
Sbjct: 442 EKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQ-DPPSYKTLILGH 500

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
              G  +   ++   M+    +P   TY  MI  L KK     A    E+M+   ++P +
Sbjct: 501 CREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTT 560

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
             ++ ++  L   G    +   V  M +     N+      +R    +G
Sbjct: 561 AIFHSILAALVEKGCAHESASLVKLMLERRIRQNIDLSTHTVRLLYKSG 609


>gi|242049112|ref|XP_002462300.1| hypothetical protein SORBIDRAFT_02g023500 [Sorghum bicolor]
 gi|241925677|gb|EER98821.1| hypothetical protein SORBIDRAFT_02g023500 [Sorghum bicolor]
          Length = 541

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 203/450 (45%), Gaps = 14/450 (3%)

Query: 18  IYRGL---SPLTTTSPAPLPPAAADP-----AALASLILTSTDPR-TLTQTLHCPSLHWT 68
           + RGL   SP     P P P    DP      AL  ++     PR  L   L   +   T
Sbjct: 20  LLRGLCSASPAGQPDPRPYPVPELDPDPQLVGALCRVLSDFRGPRHDLRAALDGFAPRLT 79

Query: 69  PQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHR 128
           P     +++R  N  + +L FF   +  P + H P S        A  R +  + +L+  
Sbjct: 80  PAAAADVLRRCRNLPVPSLRFFLFAAALPGFTHLPESLLILAGSLAGARLFPLLRSLLSD 139

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           +   +L  ++  F ++   Y  AG  D A++ F SM   G   ++   +++L  L     
Sbjct: 140 LPRPAL--SRDLFPLLFRAYARAGLPDDAIRAFSSMERFGFLPTVADLHSLLFTLSHNGL 197

Query: 189 VEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
           VE A   F+    +F     +Y ++ +GW +V +  KA ++  EM++RG+ P++  YN +
Sbjct: 198 VEHAEAFFRESPIQFDVSAKTYTILISGWAVVAKPEKAQKLFDEMIERGVQPDVPAYNAL 257

Query: 249 LKGYFRAGQIEEAWRFFLEMKK-RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           +    R G +  A     +M++ R    D  TY   +       + + A  V D M    
Sbjct: 258 IDALCRGGDVALAQEQLKDMQRSRGLAPDAATYGPFLRSACASKDARAALRVLDRMRARS 317

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           + P+V TYNA+I++LC+   V+ A  +  EM   G  P+  +YN ++   C   E+ +AL
Sbjct: 318 LTPNVFTYNAVIRLLCELGEVDEAYNILNEMATYGEKPDVWSYNTLLNTHCKLKEVNKAL 377

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
             + RM +  C PN  +YN++++     G ++R +E+++ M      P   TY ++I  +
Sbjct: 378 RLISRMDEGLCLPNRHSYNMILKMLIAIGRVDRAIEVWDGMEKRGFHPGAATYAVMIHGL 437

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
             +K   +   A    + MVD G  P + T
Sbjct: 438 SCKKGRAE--EACSYFLRMVDDGIPPYQAT 465


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 104/361 (28%), Positives = 174/361 (48%), Gaps = 4/361 (1%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M S  + P   T+ I+       G    A+ +   M   GC  +  ++NT++   C+  +
Sbjct: 148 MLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGE 207

Query: 189 VEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           V++A  L  + R G  K +++++N + NG C   R   A +V  EMV  GL P+  +YN 
Sbjct: 208 VDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNT 267

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ GY + G   EA   F EM ++    DVVT+T+++H     G ++RA  +   M   G
Sbjct: 268 LVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERG 327

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           +  +  T+ A+I   CKK  +++A+L   EM      P+   YN +I G C  G M+ A 
Sbjct: 328 LQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEAR 387

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           E V  M+    +P+V TY+ ++  +C  G+     +L ++M     LP+  TY+ LI  +
Sbjct: 388 ELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVL 447

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
              K+  D   A  L   M+  G  P + T+  +++G    GN   A  +     + G L
Sbjct: 448 CEEKRLGD---AHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVL 504

Query: 488 P 488
           P
Sbjct: 505 P 505



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 163/307 (53%), Gaps = 4/307 (1%)

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIAN 215
           A + F SM   G   ++ ++N ++  LC     ++A ++ +  RG     + ++YN +  
Sbjct: 141 ARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVA 200

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
            +C     ++A  ++  M + GL PNL T+N V+ G  +AG++E+A + F EM K     
Sbjct: 201 AFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAP 260

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
           D V+Y T+V G+  VG    A +VF  M   G++P V T+ ++I V+CK  ++E A+ + 
Sbjct: 261 DGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLV 320

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
            EM  +G   N  T+  +I G C  G ++ AL  V  M+    +P+V  YN LI  +C  
Sbjct: 321 REMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMV 380

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
           G ++   EL  +M +    P++ TY+ ++S+     K+ D   A +L  +M++ G +P  
Sbjct: 381 GRMDEARELVREMEAKGVKPDVVTYSTILSAYC---KNGDTHSAFQLNQQMLENGVLPDA 437

Query: 456 FTFNRVL 462
            T++ ++
Sbjct: 438 ITYSSLI 444



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 180/379 (47%), Gaps = 39/379 (10%)

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
           +   +++  M+     P   T+  +   +  AG+ DRA ++   M E G + +L +FN++
Sbjct: 174 KEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSV 233

Query: 180 LDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           ++ +CK  ++E A  +F ++ +     D +SYN +  G+C V  +++AL V  EM  +G+
Sbjct: 234 VNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGI 293

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR--------------------------- 271
            P++ T+  ++    +AG +E A     EM++R                           
Sbjct: 294 MPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALL 353

Query: 272 ------KCEI--DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
                 +C I   VV Y  +++G+ +VG +  AR +   M   GV P V TY+ ++   C
Sbjct: 354 AVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYC 413

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
           K     +A  + ++M+  G +P++ TY+ +IR LC    +  A      M     +P+  
Sbjct: 414 KNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEV 473

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
           TY  LI   C  G +ER L L ++M     LP++ TY++LI+ +    ++ +   A +LL
Sbjct: 474 TYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKE---AQRLL 530

Query: 444 IEMVDRGFMPRKFTFNRVL 462
            ++     +P    ++ ++
Sbjct: 531 FKLYHEEPVPANIKYDALM 549



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 149/286 (52%), Gaps = 12/286 (4%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   TF  +      AG  +RAV +   M E G + +  +F  ++D  CK+  ++ A   
Sbjct: 295 PDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLA 354

Query: 196 FKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            +  R  + +  V+ YN + NG+C+V R ++A E+++EM  +G+ P++ TY+ +L  Y +
Sbjct: 355 VREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCK 414

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR---ARNVFDGMVNGGVLPS 311
            G    A++   +M +     D +TY++++    V+ E KR   A  +F  M++ G+ P 
Sbjct: 415 NGDTHSAFQLNQQMLENGVLPDAITYSSLIR---VLCEEKRLGDAHVLFKNMISLGLQPD 471

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
             TY ++I   CK+ +VE A+ + +EMV  G +P+  TY+V+I GL  +   + A   + 
Sbjct: 472 EVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLF 531

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
           ++  +E  P    Y+ L+R  C   E++  L L +    G C+  L
Sbjct: 532 KLYHEEPVPANIKYDALMR-CCRNAELKSVLALLK----GFCMKGL 572



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 145/308 (47%), Gaps = 16/308 (5%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           LV  M++  + P   T++ I   Y   G    A ++   M E+G      ++++++ +LC
Sbjct: 389 LVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLC 448

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           +EK++  A+ LFK +     + D ++Y  + +G C      +AL +  EMV  G+ P++ 
Sbjct: 449 EEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVV 508

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKK--------------RKC-EIDVVTYTTIVHGFG 288
           TY++++ G  ++ + +EA R   ++                R C   ++ +   ++ GF 
Sbjct: 509 TYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELKSVLALLKGFC 568

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
           + G +  A  V+  +++       + Y+ +I   C++ +V  A+   ++M+  G+ PNST
Sbjct: 569 MKGLMNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQCGFAPNST 628

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           +   +IRGL   G +  A + + ++ +     + +    LI      G ++  L++   M
Sbjct: 629 STISLIRGLFEKGMVVEADQVIQQLLNCCSLADAEASKALIDLNLKEGNVDAVLDVLHGM 688

Query: 409 GSGVCLPN 416
                LP+
Sbjct: 689 ARDGLLPS 696


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 99/332 (29%), Positives = 172/332 (51%), Gaps = 1/332 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S+   ID   + R       L + M+S+ + PT  T+  +     ++G+  +A  +F  M
Sbjct: 246 SYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEM 305

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
            E   +  + +F+ ++D LCKE  V +A ++F K+ +   + D+++Y+ + +G C     
Sbjct: 306 LEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLW 365

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            ++  +L EM+ R + P++ T++I +  + + G + EA      M +R    +VVTY ++
Sbjct: 366 KESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSL 425

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G+ +  ++  AR VFD MVN G  P V +YN +I+  CK + ++ A  +F+EM  KG 
Sbjct: 426 MDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGL 485

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PNS T+  +I GLC  G    A E   +M    C P++ TY+ L+  FC  G ++  L 
Sbjct: 486 TPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALA 545

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
           LFE +      PN     IL+  M    K +D
Sbjct: 546 LFEALKKSQLKPNHVICKILLGGMCKAGKLED 577



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 187/390 (47%), Gaps = 8/390 (2%)

Query: 93  LSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLV--HRMKSLSLGPTQKTFAIIAERYVS 150
           L Y  +  + P+ + H + +    +  +T   +V   +M  L   P   +++II +    
Sbjct: 197 LDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCK 256

Query: 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVIS 209
               + AV +F  M   G   ++ ++N+++  +C   + ++A  LFK +     K DV++
Sbjct: 257 NRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVT 316

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           ++++ +  C      +AL V  +M+   + P++ TY+ ++ G  ++   +E+     EM 
Sbjct: 317 FSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEML 376

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
            R    DVVT++  V  F   G +  A+++ + M+  G+ P+V TYN+++   C    ++
Sbjct: 377 SRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMD 436

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
            A  VF+ MV KG  P+  +YN++I+G C +  ++ A +    M      PN  T+  LI
Sbjct: 437 EARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLI 496

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
              C AG      ELF+KMGS  C P+L TY+ L+S        D+ L     L E + +
Sbjct: 497 SGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALA----LFEALKK 552

Query: 450 GFM-PRKFTFNRVLNGLLLIGNQGLAKEIL 478
             + P       +L G+   G    AKE+ 
Sbjct: 553 SQLKPNHVICKILLGGMCKAGKLEDAKELF 582



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 104/439 (23%), Positives = 198/439 (45%), Gaps = 40/439 (9%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           AL +FN + +   +    + F+  +    R++ Y +V ++  +M+   +  +  T  I+ 
Sbjct: 88  ALAYFNQMVHMNPFP-CITQFNQLLAALVRMKHYDSVVSIYRKMEFFGVSCSVYTLTILI 146

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK-VEKAYNLFKVFRGKFK 204
                         +   + + G + S+ +FNT+++ LC E + VE    L  +    ++
Sbjct: 147 NCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQ 206

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
             V ++ +I NG C + +T+ A+  +K+MV+    P + +Y+I++    +   + EA   
Sbjct: 207 PTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDL 266

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
           F  M+       VVTY ++++G    G+ K+A  +F  M+   + P V T++ ++  LCK
Sbjct: 267 FYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCK 326

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
           +  V  A+ VF +M+     P+  TY+ +I G+C +   + +   +  M      P+V T
Sbjct: 327 EGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVT 386

Query: 385 YNILIRYFCDAGE-----------IERGL------------------------ELFEKMG 409
           ++I +  FC  G            IERGL                        ++F+ M 
Sbjct: 387 FSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMV 446

Query: 410 SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
           +  C P++ +YNILI      ++ D+   A +L  EM  +G  P   T   +++GL   G
Sbjct: 447 NKGCAPDVLSYNILIKGYCKSERIDE---AKQLFDEMSHKGLTPNSITHTTLISGLCQAG 503

Query: 470 NQGLAKEILRLQSRCGRLP 488
               AKE+ +     G  P
Sbjct: 504 RPYAAKELFKKMGSHGCPP 522



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 164/350 (46%), Gaps = 43/350 (12%)

Query: 71  LVDQIIK-RLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRM 129
           ++D + K RL N A+   +    +   PT      +++  I        ++    L   M
Sbjct: 250 IIDSLCKNRLVNEAVDLFYHMRSIGISPTVV----TYNSLIYGMCNSGQWKQASILFKEM 305

Query: 130 KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE--------------HG-CRQSL- 173
              ++ P   TF+I+ +     G    A+ +F  M +              HG C+ SL 
Sbjct: 306 LEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLW 365

Query: 174 -------------------NSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNV 212
                               +F+  +D+ CK+  V +A ++  +   RG  + +V++YN 
Sbjct: 366 KESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERG-LRPNVVTYNS 424

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           + +G+CL  + ++A +V   MV++G  P++ +YNI++KGY ++ +I+EA + F EM  + 
Sbjct: 425 LMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKG 484

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
              + +T+TT++ G    G    A+ +F  M + G  P + TY+ ++   CK   ++ A+
Sbjct: 485 LTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEAL 544

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
            +FE +      PN     +++ G+C  G++E A E    +  +E +P+V
Sbjct: 545 ALFEALKKSQLKPNHVICKILLGGMCKAGKLEDAKELFSSLSIEELQPDV 594



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 6/155 (3%)

Query: 323 CKKDSVEN---AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
           CK  S  N   A+  F +MV     P  T +N ++  L      +  +    +M+     
Sbjct: 77  CKGGSFSNFDDALAYFNQMVHMNPFPCITQFNQLLAALVRMKHYDSVVSIYRKMEFFGVS 136

Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA 439
            +V T  ILI   C    +  G  +  K+      P++ T+N LI+ + +  +   ++ A
Sbjct: 137 CSVYTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGR---IVEA 193

Query: 440 GKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
            + L  ++ RG+ P  +T   ++NGL  IG    A
Sbjct: 194 MEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAA 228


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 105/340 (30%), Positives = 175/340 (51%), Gaps = 8/340 (2%)

Query: 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR--GKFKADVIS 209
           G+ D+ +K+   +   G +     +N I+ LLCK  +V +A  L +  R  G F  +V+ 
Sbjct: 291 GELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVV- 349

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           Y  + +G+C +   + A ++  EM  + + P++ TY  V+ G  ++G++ EA   F EM 
Sbjct: 350 YTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEML 409

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
            +  E D VTYT ++ G+   GE+K A +V + MV  G+ P+V TY A+   LCK   ++
Sbjct: 410 VKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEID 469

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
            A  +  EM  KG  PN  TYN ++ GLC  G +E+ ++ +  M      P+  TY  L+
Sbjct: 470 VANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLM 529

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE-MVD 448
             +C  GE+ +  EL   M +    P L T+N+L++   +    +D    G+ LIE M++
Sbjct: 530 DAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLED----GERLIEWMLE 585

Query: 449 RGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           +G MP   TFN ++    +  N     EI +     G +P
Sbjct: 586 KGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMP 625



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 176/351 (50%), Gaps = 4/351 (1%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           R+ +   V  LV  +K   L P +  +  I       G+   A ++   M + G      
Sbjct: 289 RIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNV 348

Query: 175 SFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
            + T++   CK   V  A  LF ++ R K   D+++Y  + +G C   +  +A E+  EM
Sbjct: 349 VYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEM 408

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           + +GL P+  TY  ++ GY +AG+++EA+    +M ++    +VVTYT +  G    GEI
Sbjct: 409 LVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEI 468

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
             A  +   M   G+ P+V TYN ++  LCK  ++E  + + EEM   G+ P++ TY  +
Sbjct: 469 DVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTL 528

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           +   C  GEM +A E +  M +   +P + T+N+L+  FC +G +E G  L E M     
Sbjct: 529 MDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGI 588

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           +PN  T+N L+    ++   +++    ++   M DRG MP   T+N ++ G
Sbjct: 589 MPNATTFNSLMKQYCIK---NNMRATTEIYKAMHDRGVMPDSNTYNILIKG 636



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 108/368 (29%), Positives = 169/368 (45%), Gaps = 39/368 (10%)

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKF----------- 203
           AVK+F    E G   +  S N +L  LC+  KV +A+NL      RG F           
Sbjct: 226 AVKVFEEFPELGVCWNTVSCNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVS 285

Query: 204 -----------------------KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
                                  K D   YN I    C      +A ++L+ M   G+ P
Sbjct: 286 GYCRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFP 345

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           +   Y  V+ G+ + G +  A + F EM+++K   D+VTYT+++HG    G++  AR +F
Sbjct: 346 DNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMF 405

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           + M+  G+ P   TY A+I   CK   ++ A  V  +MV KG  PN  TY  +  GLC  
Sbjct: 406 NEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKN 465

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
           GE++ A E +  M     +PNV TYN ++   C  G IE+ ++L E+M      P+  TY
Sbjct: 466 GEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITY 525

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
             L+ +     K  ++  A +LL  M+++   P   TFN ++NG  + G     + ++  
Sbjct: 526 TTLMDAYC---KMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEW 582

Query: 481 QSRCGRLP 488
               G +P
Sbjct: 583 MLEKGIMP 590



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 170/354 (48%), Gaps = 4/354 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L   M+   + P   T+  +      +GK   A ++F  M   G      ++  ++D  C
Sbjct: 369 LFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYC 428

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  ++++A+++  ++ +     +V++Y  +A+G C     + A E+L EM  +GL PN+ 
Sbjct: 429 KAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVY 488

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN ++ G  + G IE+  +   EM       D +TYTT++  +  +GE+ +A  +   M
Sbjct: 489 TYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIM 548

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           +N  + P++ T+N ++   C    +E+   + E M+ KG MPN+TT+N +++  C    M
Sbjct: 549 LNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNM 608

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
               E    M D    P+  TYNILI+  C A  ++    L ++M          TY+ L
Sbjct: 609 RATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDAL 668

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
           I   + RKK    + A KL  EM   G +  K  ++  ++     GN  +  E+
Sbjct: 669 IRGFYKRKK---FVEARKLFEEMRKHGLVAEKDIYDIFVDVNYEEGNWEITLEL 719



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 161/322 (50%), Gaps = 4/322 (1%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           +S  H I  + ++ + R ++   + M    L P + T+  + + Y  AG+   A  +   
Sbjct: 386 TSVIHGICKSGKMVEAREMF---NEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQ 442

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKR 222
           M + G   ++ ++  + D LCK  +++ A  L  ++ R   + +V +YN I NG C +  
Sbjct: 443 MVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGN 502

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
             + +++++EM   G  P+  TY  ++  Y + G++ +A      M  ++ +  +VT+  
Sbjct: 503 IEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNV 562

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           +++GF + G ++    + + M+  G++P+  T+N++++  C K+++     +++ M  +G
Sbjct: 563 LMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRG 622

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
            MP+S TYN++I+G C    M+ A      M +        TY+ LIR F    +     
Sbjct: 623 VMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEAR 682

Query: 403 ELFEKMGSGVCLPNLDTYNILI 424
           +LFE+M     +   D Y+I +
Sbjct: 683 KLFEEMRKHGLVAEKDIYDIFV 704



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 147/301 (48%), Gaps = 1/301 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   ID   +  + +  +++ ++M    L P   T+  +A+     G+ D A ++   M
Sbjct: 419 TYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEM 478

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRT 223
              G + ++ ++NTI++ LCK   +E+   L +      F  D I+Y  + + +C +   
Sbjct: 479 SRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEM 538

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            KA E+L+ M+++ L P L T+N+++ G+  +G +E+  R    M ++    +  T+ ++
Sbjct: 539 AKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSL 598

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +  + +   ++    ++  M + GV+P   TYN +I+  CK  +++ A  + +EMV KGY
Sbjct: 599 MKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGY 658

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
              + TY+ +IRG     +   A +    M+          Y+I +    + G  E  LE
Sbjct: 659 SVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGLVAEKDIYDIFVDVNYEEGNWEITLE 718

Query: 404 L 404
           L
Sbjct: 719 L 719



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 152/353 (43%), Gaps = 40/353 (11%)

Query: 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD-LLCKEKKVEKAYNLFKVF 199
           F +  +  V  G    A K+F  +  +G   S++S N  L  L C  + ++ A  +F+ F
Sbjct: 174 FDLYFQVLVENGFVLEAQKLFHKLLRYGVVVSVDSCNLFLSRLSCNFEGIKIAVKVFEEF 233

Query: 200 -RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
                  + +S N++ +  C + +  +A  +L +M DRG  P++ +Y +V+ GY R G++
Sbjct: 234 PELGVCWNTVSCNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGEL 293

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           ++  +   E+K +  + D   Y  I+      GE+  A  +  GM   GV P    Y  +
Sbjct: 294 DKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTV 353

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           I   CK  +V  A  +F+EM  K  +P+  TY  VI G+C +G+M  A E    M     
Sbjct: 354 ISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGL 413

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
           EP+  TY  LI  +C AGE++    +                                  
Sbjct: 414 EPDEVTYTALIDGYCKAGEMKEAFSVHN-------------------------------- 441

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
                 +MV +G  P   T+  + +GL   G   +A E+L   SR G  P  +
Sbjct: 442 ------QMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVY 488



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 135/332 (40%), Gaps = 34/332 (10%)

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLC-------KEKKVEKAYNLFKVFRGKFKADVISYNV 212
           + L++      QS   F+  L+ LC           ++ A  L   F  K K DV     
Sbjct: 95  LVLNLFNWAKSQSQQQFHPTLESLCIVVHLSVASNDIQTAKRLVFEFCAKPKIDV----- 149

Query: 213 IANGWCLVKRTNKALEVLKEMV-----DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
                      +K+  +  EM+     D G +P    +++  +     G + EA + F +
Sbjct: 150 -----------SKSFHLFTEMLIYTYKDWGSHP--LVFDLYFQVLVENGFVLEAQKLFHK 196

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGE-IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           + +    + V +    +       E IK A  VF+     GV  +  + N ++  LC+  
Sbjct: 197 LLRYGVVVSVDSCNLFLSRLSCNFEGIKIAVKVFEEFPELGVCWNTVSCNIVLHCLCQLG 256

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            V  A  +  +M  +G  P+  +Y VV+ G C  GE+++ L+ V  +K    +P+   YN
Sbjct: 257 KVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKVLKLVDELKGKGLKPDEYIYN 316

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            +I   C  GE+    +L   M      P+   Y  +IS      K  ++  A KL  EM
Sbjct: 317 NIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFC---KLGNVSAACKLFDEM 373

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
             +  +P   T+  V++G+   G    A+E+ 
Sbjct: 374 RRKKIVPDIVTYTSVIHGICKSGKMVEAREMF 405


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 111/397 (27%), Positives = 201/397 (50%), Gaps = 8/397 (2%)

Query: 93  LSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAG 152
           L YHPT   + ++  + I L  +L++          + +L     Q ++  +       G
Sbjct: 123 LGYHPTTI-TFNTLINGICLNGKLKE---ALHFHDHVIALGFHLDQVSYRTLINGLCKIG 178

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYN 211
           +   A+++   +        +  +N I++ LCK+K V  AY L+ ++   +   DV+++N
Sbjct: 179 ETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFN 238

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
            +  G+C+V +  +A  +  EMV + +NP++ T++I++    + G I  A      M K+
Sbjct: 239 SLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQ 298

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
               DVVTY++++ G+ +V E+ +A++VF  M   GV P   +YN MI  L K   V+ A
Sbjct: 299 GVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEA 358

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
           + +F+EM  KG  P++ TYN +I GLC  G +  A + V  M ++    ++ TYN LI  
Sbjct: 359 LSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDV 418

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
            C    I++ + L +K+      P++ TYNILI  +    K   L  A  +  +++ +G+
Sbjct: 419 LCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLC---KGGRLKNAQDVFQDLLIKGY 475

Query: 452 MPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
               +T+N ++NGL   G    A+ +L      G +P
Sbjct: 476 SVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIP 512



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 97/331 (29%), Positives = 165/331 (49%), Gaps = 4/331 (1%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           + L   M +  + P   TF  +   +   G+   A  +F  M        + +F+ ++D 
Sbjct: 219 YQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDA 278

Query: 183 LCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           LCK+  + +A N+  V  +     DV++Y+ + +G+CLV   NKA  V   M   G+ P+
Sbjct: 279 LCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPH 338

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
             +YNI++ G  +   ++EA   F EM  +    D VTY +++ G   +G I  A  + D
Sbjct: 339 AHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVD 398

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M N G+   + TYN++I VLCK   ++ AI + +++  +G  P+  TYN++I GLC  G
Sbjct: 399 EMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGG 458

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
            ++ A +    +       N  TYNI+I   C  G       L  KM +   +P+  TY 
Sbjct: 459 RLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYE 518

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
            +I ++F + +++    A KLL EM+ RG +
Sbjct: 519 TIIRALFRKDENEK---AEKLLREMIIRGLL 546



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 182/360 (50%), Gaps = 6/360 (1%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           Y T  +L H+++   + PT  TF I+   Y   G+   A  IF  + + G   +  +FNT
Sbjct: 75  YTTAISLSHQLELKGITPTIVTFNILVNCYCHLGEMTFAFSIFAKILKLGYHPTTITFNT 134

Query: 179 ILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           +++ +C   K+++A +    V    F  D +SY  + NG C +  T  AL++LK++  + 
Sbjct: 135 LINGICLNGKLKEALHFHDHVIALGFHLDQVSYRTLINGLCKIGETRAALQMLKKIEGKL 194

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
           +N ++  YNI++    +   + +A++ + EM  ++   DVVT+ +++ GF VVG++K A 
Sbjct: 195 VNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAF 254

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
            +F  MV   + P V T++ ++  LCK  ++  A  +   M+ +G +P+  TY+ ++ G 
Sbjct: 255 GLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGY 314

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
           C   E+ +A      M      P+  +YNI+I        ++  L LF++M      P+ 
Sbjct: 315 CLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDT 374

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
            TYN LI  +    K   +  A +L+ EM + G      T+N +++  +L  N  + K I
Sbjct: 375 VTYNSLIDGLC---KLGRISYAWQLVDEMHNNGIPADILTYNSLID--VLCKNHHIDKAI 429



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 110/232 (47%), Gaps = 2/232 (0%)

Query: 79  LWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQ 138
           L N   KA H F+ +S      H+  S++  I+   +++      +L   M    + P  
Sbjct: 316 LVNEVNKAKHVFSTMSRLGVAPHA-HSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDT 374

Query: 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV 198
            T+  + +     G+   A ++   MH +G    + ++N+++D+LCK   ++KA  L K 
Sbjct: 375 VTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKK 434

Query: 199 FRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
            + +  +  + +YN++ +G C   R   A +V ++++ +G + N  TYNI++ G  + G 
Sbjct: 435 IKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGL 494

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
             EA     +M+      D VTY TI+       E ++A  +   M+  G+L
Sbjct: 495 FNEAEVLLSKMENNGIIPDAVTYETIIRALFRKDENEKAEKLLREMIIRGLL 546


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 175/346 (50%), Gaps = 7/346 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   ++  +   +  A + D A ++F  M   G    + ++N ++  LC   K+E A+ +
Sbjct: 129 PDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEV 188

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             ++ +   K  VI+Y ++     L  R N+ALE+  E+V RGL P+L TYN +++G  +
Sbjct: 189 MDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICK 248

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G  + A  F   +  R C  DVV+Y  ++  F      +    +   MV  G  P+V T
Sbjct: 249 EGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVT 308

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           ++ +I   C++  V  A+ V E M  KG  P+S +Y+ +I   C  G ++ A+E++ +M 
Sbjct: 309 HSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMV 368

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
            D C P++  YN ++   C  G  +  L++FEK+    C P +  YN + S+++      
Sbjct: 369 SDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALW---SCG 425

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           + + A +++ EM+ +G  P + T+N +++ L      GL  E + L
Sbjct: 426 NKIKALEMISEMIRKGIDPDEITYNSLISCLC---RDGLVDEAIGL 468



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 110/400 (27%), Positives = 194/400 (48%), Gaps = 12/400 (3%)

Query: 71  LVDQIIKRLWN--HALKALHFFNILSYHPTYAHSPS-SFDHAIDLAARLRDYRTVWTLVH 127
           L  ++IK  +N  +  KA+    IL    TY      S++  I   ++     +   +  
Sbjct: 99  LCTKLIKGFFNSRNLKKAMRVMEILE---TYGDPDVYSYNAMISGFSKANQIDSANQVFD 155

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           RM+S    P   T+ I+     S GK + A ++   + + GC+ S+ ++  +++    E 
Sbjct: 156 RMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEG 215

Query: 188 KVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
           ++ +A  LF   V RG  + D+ +YN I  G C     ++AL+ ++ +  RG NP++ +Y
Sbjct: 216 RINEALELFDELVSRG-LRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSY 274

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           NI+L+ +    + E+  R   +M    CE +VVT++ ++  F   G ++ A NV + M  
Sbjct: 275 NILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKE 334

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G+ P   +Y+ +I   CK+  ++ AI   E+MV  G +P+   YN ++  LC  G  + 
Sbjct: 335 KGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADL 394

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           AL+   ++ +  C P V+ YN +       G   + LE+  +M      P+  TYN LIS
Sbjct: 395 ALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLIS 454

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            +      D+   A  LL++M    F P   +FN VL G+
Sbjct: 455 CLCRDGLVDE---AIGLLVDMEATRFQPTVISFNIVLLGM 491



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 165/342 (48%), Gaps = 3/342 (0%)

Query: 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKAD 206
           R   AGK + ++    S+   G +  +     ++      + ++KA  + ++       D
Sbjct: 71  RSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYGDPD 130

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           V SYN + +G+    + + A +V   M  RG +P++ TYNI++      G++E A+    
Sbjct: 131 VYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMD 190

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           E+ K  C+  V+TYT ++    + G I  A  +FD +V+ G+ P + TYNA+I+ +CK+ 
Sbjct: 191 ELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEG 250

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
             + A+     +  +G  P+  +YN+++R   +    E     +  M    CEPNV T++
Sbjct: 251 MEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHS 310

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
           ILI  FC  G +   + + E M      P+  +Y+ LIS+ F ++   DL +  + L +M
Sbjct: 311 ILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISA-FCKEGRLDLAI--EYLEKM 367

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           V  G +P    +N +L  L   G   LA ++       G  P
Sbjct: 368 VSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPP 409



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 131/281 (46%), Gaps = 1/281 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
            V  + +    P   ++ I+   +++  + +   ++   M   GC  ++ + + ++   C
Sbjct: 258 FVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFC 317

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           +E +V +A N+ +V + K    D  SY+ + + +C   R + A+E L++MV  G  P++ 
Sbjct: 318 REGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIV 377

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            YN +L    + G  + A   F ++ +  C   V  Y T+       G   +A  +   M
Sbjct: 378 NYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEM 437

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           +  G+ P   TYN++I  LC+   V+ AI +  +M    + P   ++N+V+ G+C    +
Sbjct: 438 IRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQPTVISFNIVLLGMCKAHRV 497

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
              +E +  M +  C PN  +Y +LI     AG     +EL
Sbjct: 498 FEGIELLITMVEKGCLPNETSYVLLIEGIAYAGWRAEAMEL 538



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 97/222 (43%), Gaps = 3/222 (1%)

Query: 91  NILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLG--PTQKTFAIIAERY 148
           N+L        +P S+ +   ++A  ++ R    + +  K +S G  P    +  I    
Sbjct: 327 NVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATL 386

Query: 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADV 207
              G AD A+ +F  + E GC  ++ ++NT+   L       KA  +  ++ R     D 
Sbjct: 387 CKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDE 446

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           I+YN + +  C     ++A+ +L +M      P + ++NIVL G  +A ++ E     + 
Sbjct: 447 ITYNSLISCLCRDGLVDEAIGLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLIT 506

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
           M ++ C  +  +Y  ++ G    G    A  + + +   GV+
Sbjct: 507 MVEKGCLPNETSYVLLIEGIAYAGWRAEAMELANSLYRLGVI 548


>gi|302754000|ref|XP_002960424.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
 gi|300171363|gb|EFJ37963.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
          Length = 321

 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 156/301 (51%), Gaps = 6/301 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           PT  TF I+ +    A +   A ++   M E GC  +   FN I+D LCKE +  +AY  
Sbjct: 8   PTVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGRSAEAYGY 67

Query: 196 FKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            +  R       +++YN++ +G+C  ++ ++ALE+L+EM  RG  PN  TYN  L G  +
Sbjct: 68  IETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCK 127

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G++++A   F  M ++K  +DV  YTT++ G    G++  A ++ D M N G +P    
Sbjct: 128 YGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGC 187

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YNA++  LCK   +  A  +F+ M G G +P+  T+ +++ G C    ++ AL  + +MK
Sbjct: 188 YNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMK 247

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
                P    YN LI     AG +     L ++M S    PN  TY     ++  ++++D
Sbjct: 248 SAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEMISRGLSPNSRTY-----ALMRKQQTD 302

Query: 435 D 435
           D
Sbjct: 303 D 303



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 141/297 (47%), Gaps = 6/297 (2%)

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVK 221
           M E GC  ++ +F  ++D LCK  ++  A+ L +V   RG F  + + +N I +  C   
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMAERGCF-PNALVFNGIMDALCKEG 59

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
           R+ +A   ++ M   G++P + TYNI++ G+ +  ++  A     EM  R  E + VTY 
Sbjct: 60  RSAEAYGYIETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYN 119

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
           T +HG    G++  A  +F  M    +   V  Y  +I  LC+   +  A  + +EM   
Sbjct: 120 TFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENS 179

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
           G +P    YN ++  LC    +  A +   RM      P+  T+ +++  +C    I+  
Sbjct: 180 GCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDA 239

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           L L ++M S    P    YN LI ++    ++  +  A +LL EM+ RG  P   T+
Sbjct: 240 LLLLQQMKSAGLAPREVIYNTLIDAL---NRAGRVSEAYRLLQEMISRGLSPNSRTY 293



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 133/274 (48%), Gaps = 5/274 (1%)

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           V+++ ++ +G C   R   A E+++ M +RG  PN   +N ++    + G+  EA+ +  
Sbjct: 10  VVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGRSAEAYGYIE 69

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
            M+       +VTY  ++ GF    ++ RA  +   M   G  P+  TYN  +  LCK  
Sbjct: 70  TMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYG 129

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            V++A+ +F  M  K    +   Y  +I GLC  G++  A   +  M++  C P    YN
Sbjct: 130 KVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYN 189

Query: 387 ILIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
            ++ + C    I    +LF++M GSG+ LP+  T+ +++       + DD L+   LL +
Sbjct: 190 AILSWLCKGSRINEAHKLFKRMTGSGI-LPDWLTFGMMVFGYCRGHRIDDALL---LLQQ 245

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           M   G  PR+  +N +++ L   G    A  +L+
Sbjct: 246 MKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQ 279



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 133/280 (47%), Gaps = 22/280 (7%)

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M ++G  P + T+ I++ G  +A ++ +A+     M +R C  + + +  I+      G 
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGR 60

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
              A    + M + GV P++ TYN +I   CK++ +  A+ + +EM G+G+ PN  TYN 
Sbjct: 61  SAEAYGYIETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNT 120

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
            + GLC  G+++ AL     M + +   +V  Y  LI   C AG++     L ++M +  
Sbjct: 121 FLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSG 180

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF----------NRVL 462
           C+P    YN ++S +    K   +  A KL   M   G +P   TF          +R+ 
Sbjct: 181 CVPKPGCYNAILSWLC---KGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRID 237

Query: 463 NGLLLI---GNQGLA------KEILRLQSRCGRLPRQFKL 493
           + LLL+    + GLA        ++   +R GR+   ++L
Sbjct: 238 DALLLLQQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRL 277



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 123/277 (44%), Gaps = 4/277 (1%)

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
           A RL D    + LV  M      P    F  I +     G++  A     +M   G   +
Sbjct: 23  ANRLTD---AFELVEVMAERGCFPNALVFNGIMDALCKEGRSAEAYGYIETMRSMGVSPT 79

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLK 231
           + ++N ++D  CKE+K+ +A  + +   G+  + + ++YN   +G C   + + AL + +
Sbjct: 80  IVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKVDDALALFR 139

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
            M ++ +  ++  Y  ++ G  +AG++ EA+    EM+   C      Y  I+       
Sbjct: 140 AMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYNAILSWLCKGS 199

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
            I  A  +F  M   G+LP   T+  M+   C+   +++A+L+ ++M   G  P    YN
Sbjct: 200 RINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYN 259

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
            +I  L   G +  A   +  M      PN +TY ++
Sbjct: 260 TLIDALNRAGRVSEAYRLLQEMISRGLSPNSRTYALM 296



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 66/171 (38%), Gaps = 43/171 (25%)

Query: 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR 200
           +  + +    AGK   A  +   M   GC      +N IL  LCK  ++ +A+ LFK   
Sbjct: 153 YTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMT 212

Query: 201 GK-FKADVISYNVIANGWCLVKRTNKAL-------------------------------- 227
           G     D +++ ++  G+C   R + AL                                
Sbjct: 213 GSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDALNRAGRVS 272

Query: 228 ---EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK-CE 274
               +L+EM+ RGL+PN  TY ++ K      Q  +     +E+  RK CE
Sbjct: 273 EAYRLLQEMISRGLSPNSRTYALMRK------QQTDDSNLVVELDYRKECE 317


>gi|302767746|ref|XP_002967293.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
 gi|300165284|gb|EFJ31892.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
          Length = 321

 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 156/301 (51%), Gaps = 6/301 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           PT  TF I+ +    A +   A ++   M E GC  +   FN I+D LCKE +  +AY  
Sbjct: 8   PTVVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGRSAEAYGF 67

Query: 196 FKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            +  R       +++YN++ +G+C  ++ ++ALE+L+EM  RG  PN  TYN  L G  +
Sbjct: 68  IETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCK 127

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G++++A   F  M ++K  +DV  YTT++ G    G++  A ++ D M N G +P    
Sbjct: 128 YGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGC 187

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YNA++  LCK   +  A  +F+ M G G +P+  T+ +++ G C    ++ AL  + +MK
Sbjct: 188 YNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMK 247

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
                P    YN LI     AG +     L ++M S    PN  TY     ++  ++++D
Sbjct: 248 SAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEMISRGLSPNSRTY-----ALMRKQQTD 302

Query: 435 D 435
           D
Sbjct: 303 D 303



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 141/297 (47%), Gaps = 6/297 (2%)

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVK 221
           M E GC  ++ +F  ++D LCK  ++  A+ L +V   RG F  + + +N I +  C   
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMGERGCF-PNALVFNGIMDALCKEG 59

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
           R+ +A   ++ M   G++P + TYN+++ G+ +  ++  A     EM  R  E + VTY 
Sbjct: 60  RSAEAYGFIETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYN 119

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
           T +HG    G++  A  +F  M    +   V  Y  +I  LC+   +  A  + +EM   
Sbjct: 120 TFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENS 179

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
           G +P    YN ++  LC    +  A +   RM      P+  T+ +++  +C    I+  
Sbjct: 180 GCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDA 239

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           L L ++M S    P    YN LI ++    ++  +  A +LL EM+ RG  P   T+
Sbjct: 240 LLLLQQMKSAGLAPREVIYNTLIDAL---NRAGRVSEAYRLLQEMISRGLSPNSRTY 293



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 133/274 (48%), Gaps = 5/274 (1%)

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           V+++ ++ +G C   R   A E+++ M +RG  PN   +N ++    + G+  EA+ F  
Sbjct: 10  VVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGRSAEAYGFIE 69

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
            M+       +VTY  ++ GF    ++ RA  +   M   G  P+  TYN  +  LCK  
Sbjct: 70  TMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYG 129

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            V++A+ +F  M  K    +   Y  +I GLC  G++  A   +  M++  C P    YN
Sbjct: 130 KVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYN 189

Query: 387 ILIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
            ++ + C    I    +LF++M GSG+ LP+  T+ +++       + DD L+   LL +
Sbjct: 190 AILSWLCKGSRINEAHKLFKRMTGSGI-LPDWLTFGMMVFGYCRGHRIDDALL---LLQQ 245

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           M   G  PR+  +N +++ L   G    A  +L+
Sbjct: 246 MKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQ 279



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 114/232 (49%), Gaps = 3/232 (1%)

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M ++G  P + T+ I++ G  +A ++ +A+     M +R C  + + +  I+      G 
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGR 60

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
              A    + M + GV P++ TYN +I   CK++ +  A+ + +EM G+G+ PN  TYN 
Sbjct: 61  SAEAYGFIETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNT 120

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
            + GLC  G+++ AL     M + +   +V  Y  LI   C AG++     L ++M +  
Sbjct: 121 FLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSG 180

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           C+P    YN ++S +    K   +  A KL   M   G +P   TF  ++ G
Sbjct: 181 CVPKPGCYNAILSWLC---KGSRINEAHKLFKRMTGSGILPDWLTFGMMVFG 229



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 123/277 (44%), Gaps = 4/277 (1%)

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
           A RL D    + LV  M      P    F  I +     G++  A     +M   G   +
Sbjct: 23  ANRLTD---AFELVEVMGERGCFPNALVFNGIMDALCKEGRSAEAYGFIETMRSMGVSPT 79

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLK 231
           + ++N ++D  CKE+K+ +A  + +   G+  + + ++YN   +G C   + + AL + +
Sbjct: 80  IVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKVDDALALFR 139

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
            M ++ +  ++  Y  ++ G  +AG++ EA+    EM+   C      Y  I+       
Sbjct: 140 AMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYNAILSWLCKGS 199

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
            I  A  +F  M   G+LP   T+  M+   C+   +++A+L+ ++M   G  P    YN
Sbjct: 200 RINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYN 259

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
            +I  L   G +  A   +  M      PN +TY ++
Sbjct: 260 TLIDALNRAGRVSEAYRLLQEMISRGLSPNSRTYALM 296



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 66/171 (38%), Gaps = 43/171 (25%)

Query: 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR 200
           +  + +    AGK   A  +   M   GC      +N IL  LCK  ++ +A+ LFK   
Sbjct: 153 YTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMT 212

Query: 201 GK-FKADVISYNVIANGWCLVKRTNKAL-------------------------------- 227
           G     D +++ ++  G+C   R + AL                                
Sbjct: 213 GSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDALNRAGRVS 272

Query: 228 ---EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK-CE 274
               +L+EM+ RGL+PN  TY ++ K      Q  +     +E+  RK CE
Sbjct: 273 EAYRLLQEMISRGLSPNSRTYALMRK------QQTDDSNLVVELDYRKECE 317


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 112/407 (27%), Positives = 175/407 (42%), Gaps = 41/407 (10%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           A+ FF        + H   +++  ++L    ++Y   + +   M    + P   +F I+ 
Sbjct: 102 AISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILI 161

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF--------- 196
             +    +AD AV  F  M    C+  L++F  ++D LCK    EKA+ +F         
Sbjct: 162 RSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFV 221

Query: 197 ------------------------KVF----RGKFKADVISYNVIANGWCLVKRTNKALE 228
                                   +VF    +  F  D I+YN + +G        +AL+
Sbjct: 222 PPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALK 281

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           VL  M+ +   P   TY I++    +AG +E A   F  M       + V YT+++HGF 
Sbjct: 282 VLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFA 341

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G +K A ++FD MV  G  P V T+  MI  LCK  + E A   FEEM+  G  PN  
Sbjct: 342 KSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVV 401

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           TY  +I+GL   G +  A   +  M    C P+  TY  L+  FC  G ++   +L +++
Sbjct: 402 TYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDEL 461

Query: 409 GSGVCLPNLDTYNILISSMF----VRKKSDDLLVAGKLLIEMVDRGF 451
                 PNL  Y+ L++ +     V K  DDL    K   E +D G 
Sbjct: 462 DKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGL 508



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 173/360 (48%), Gaps = 12/360 (3%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN- 194
           P   T+  + + +   G+ D A ++   + +     +L  ++++++ LC    VEK  + 
Sbjct: 433 PDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDD 492

Query: 195 LFKVFRGKFKADVISYNVIAN---GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
           LF+  + K  A+ +   +  +   G C   R ++A  + + MV  G  P+ TTYNI++ G
Sbjct: 493 LFE--QSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILING 550

Query: 252 YFRA--GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
             R+   ++E A+    +++K     D VTYT +  G   +GE+ RA  + +   + G  
Sbjct: 551 LCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWN 610

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
             V  Y A+   LC +  V+ A+ +F+EMV +G  P++  Y  +I GL    ++E A +F
Sbjct: 611 ADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKF 670

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISSMF 428
              M     +P V TY  L++  C AG ++     FE M   G  + ++  Y+ LI    
Sbjct: 671 FDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFC 730

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
              K D  L   KL  +M+ RG +P   T   + +GL+  G    A+E+L+  +  G  P
Sbjct: 731 KALKVDAAL---KLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPP 787



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 144/292 (49%), Gaps = 7/292 (2%)

Query: 178 TILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVK--RTNKALEVLKEMV 234
           +I+  LCK  ++++A  +F ++     K D  +YN++ NG C  +  R  +A  +L ++ 
Sbjct: 511 SIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLE 570

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
             G  P+  TY  +  G  + G+++ A +   E   R    DVV YT +  G    G++ 
Sbjct: 571 KVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVD 630

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
           RA ++F  MV  G  P  A Y  +I  L K   +E+A   F+EM+GKG  P   TY  ++
Sbjct: 631 RAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALV 690

Query: 355 RGLCHTGEMERALE-FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           + LCH G ++ A   F   +   E   +V  Y+ LI  FC A +++  L+LFE M S   
Sbjct: 691 QALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGN 750

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           +P   T   L   +    K++    A +LL EM   G  P   TF  +L+GL
Sbjct: 751 VPTAVTSASLFDGLVRSGKTEK---AQELLQEMAAGGSPPHAATFTAILDGL 799



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 151/316 (47%), Gaps = 5/316 (1%)

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           SFN ++    + ++ + A   F++  R + K D+ ++ ++ +  C      KA EV  EM
Sbjct: 156 SFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEM 215

Query: 234 VDRG-LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           +  G + P+   +  +++   +A +++EA   F +M+K     D + Y T++ G    G 
Sbjct: 216 MAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGH 275

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
            + A  V D M+    +P+  TY  ++  LCK  ++E A  +F  M   G+ PNS  Y  
Sbjct: 276 AQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTS 335

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           +I G   +G M+ A      M +    P+V T+ ++I   C +G  E+  + FE+M  G 
Sbjct: 336 LIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGG 395

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
           C PN+ TY  +I  +    K   +  A +++  M+  G  P   T+  +L+G   +G   
Sbjct: 396 CKPNVVTYTTIIQGL---SKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLD 452

Query: 473 LAKEILRLQSRCGRLP 488
            A ++L    +C   P
Sbjct: 453 EAAQLLDELDKCSSSP 468



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 185/403 (45%), Gaps = 42/403 (10%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID  A+    +    ++  M + +  PT+ T+ I+      AG  +RA ++F  M
Sbjct: 262 AYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVM 321

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
              G R +   + +++    K  ++++A +LF ++    ++ DVI++ V+ +G C     
Sbjct: 322 AASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNF 381

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A +  +EM+  G  PN+ TY  +++G  + G++  A+R    M    C  D VTY  +
Sbjct: 382 EQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICL 441

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE-------------- 329
           + GF  +G +  A  + D +      P++  Y++++  LC   SVE              
Sbjct: 442 LDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAA 501

Query: 330 ----------------------NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE--MER 365
                                  A  +F+ MV +G  P++TTYN++I GLC + E  +ER
Sbjct: 502 ETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVER 561

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           A   +  ++     P+  TY  L    C  GE++R +++ E+  S     ++  Y  L +
Sbjct: 562 AFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCT 621

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
            +  + + D    A  L  EMV +G  P    +  ++NGL+ +
Sbjct: 622 GLCYQGQVDR---AVSLFQEMVRQGGAPDAAAYCCIINGLIKV 661



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/272 (31%), Positives = 136/272 (50%), Gaps = 4/272 (1%)

Query: 200 RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
           +  F+ DV +YN + N     K  ++   + +EM+  G+ PN  ++NI+++ + R  + +
Sbjct: 112 QAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRAD 171

Query: 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG-VLPSVATYNAM 318
           +A   F  MK+++C+ D+ T+  +V      G  ++A  VF  M+  G V P  A + AM
Sbjct: 172 DAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAM 231

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           ++ L K   V+ A  VF +M   G+ P++  YN +I GL   G  + AL+ +  M    C
Sbjct: 232 VRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKAC 291

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
            P   TY IL+   C AG +ER  ELF  M +    PN   Y  LI       KS  +  
Sbjct: 292 VPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGF---AKSGRMKE 348

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
           A  L  EMV+ G+ P   T   +++GL   GN
Sbjct: 349 ACSLFDEMVEAGYRPDVITHTVMIDGLCKSGN 380



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 137/295 (46%), Gaps = 39/295 (13%)

Query: 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK--EKKVEKAYNLF-KVFRGKFKADVI 208
           G+ D A +IF  M   GC+    ++N +++ LC+  E +VE+A+ L   + +  +  D +
Sbjct: 520 GRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAV 579

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           +Y  +  G C +   ++A+++L+E   RG N ++  Y  +  G    GQ++ A   F EM
Sbjct: 580 TYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEM 639

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC----- 323
            ++    D   Y  I++G   V +++ A   FD M+  G  P+VATY A++Q LC     
Sbjct: 640 VRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNV 699

Query: 324 -------------------------------KKDSVENAILVFEEMVGKGYMPNSTTYNV 352
                                          K   V+ A+ +FE+M+ +G +P + T   
Sbjct: 700 DEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSAS 759

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
           +  GL  +G+ E+A E +  M      P+  T+  ++     + E  + L+L ++
Sbjct: 760 LFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDESGKLLKLVQE 814



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 130/271 (47%), Gaps = 4/271 (1%)

Query: 104 SSFDHAIDLAARLRDYRT--VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           ++++  I+   R R+ R    + L+H ++ +   P   T+  +       G+ DRAVK+ 
Sbjct: 542 TTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKML 601

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLV 220
                 G    + ++  +   LC + +V++A +LF+ + R     D  +Y  I NG   V
Sbjct: 602 EEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKV 661

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI-DVVT 279
           K+   A +   EM+ +G  P + TY  +++    AG ++EA+  F  M  R   +  V+ 
Sbjct: 662 KKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSVMI 721

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y  ++HGF    ++  A  +F+ M++ G +P+  T  ++   L +    E A  + +EM 
Sbjct: 722 YDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMA 781

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
             G  P++ T+  ++ GL  + E  + L+ V
Sbjct: 782 AGGSPPHAATFTAILDGLRKSDESGKLLKLV 812



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 86/177 (48%), Gaps = 7/177 (3%)

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
             G    V TYN ++ +L  + +      + EEM+  G  PN+ ++N++IR    T   +
Sbjct: 112 QAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRAD 171

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF-EKMGSGVCLPNLDTYNIL 423
            A+     MK   C+P++ T+ IL+   C AG  E+  E+F E M  G   P+   +  +
Sbjct: 172 DAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAM 231

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           + ++   K+  +   A ++  +M   GF P    +N +++GL      G A+E L++
Sbjct: 232 VRTLLKAKRVKE---AREVFGQMEKCGFPPDAIAYNTMIDGL---AKAGHAQEALKV 282


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 102/342 (29%), Positives = 176/342 (51%), Gaps = 5/342 (1%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           W +   M    + P   T+  + + +   G   +  K+ LS  E  C+ +L ++N  +  
Sbjct: 227 WKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKG-KMVLSEMEKECKPNLFTYNAFIGG 285

Query: 183 LCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           LC+   V++A  + K+   K    D  +Y ++ +G+C  KR+ +A  + + M   GLNPN
Sbjct: 286 LCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPN 345

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
             TY  ++ G+ + G IEEA R   EM  R  +++VVTY  ++ G    GE+ +A ++F+
Sbjct: 346 RFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFN 405

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M+  G+ P   TYN +I    K   +  A  +  EM  +   P+  TY+V+I GLCH+ 
Sbjct: 406 EMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSS 465

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
           ++++A E + +M  +  +PNV  Y  LI+ +      E  +EL + M +   LP+L  YN
Sbjct: 466 DLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYN 525

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
            LI  +   KK ++   A  LL++M ++G  P   T+   +N
Sbjct: 526 CLIIGLCRAKKVEE---AKMLLVDMGEKGIKPNAHTYGAFIN 564



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 171/365 (46%), Gaps = 6/365 (1%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M    LGP   T+ ++ + +    ++  A  IF SM   G   +  ++  ++D   KE  
Sbjct: 302 MMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGN 361

Query: 189 VEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
           +E+A  +    + RG  K +V++YN +  G        KA+ +  EM+  G+ P+  TYN
Sbjct: 362 IEEALRIKDEMITRG-LKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYN 420

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
           +++ GY ++  + +A     EMK RK      TY+ ++ G     ++++A  V D M+  
Sbjct: 421 LLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRN 480

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           GV P+V  Y  +I+   ++   E AI + + M+  G +P+   YN +I GLC   ++E A
Sbjct: 481 GVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEA 540

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
              +  M +   +PN  TY   I  +  +GEI+     F+ M S   +PN   Y ILI  
Sbjct: 541 KMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKG 600

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGR 486
                 + + L   K ++E   +G +P    ++ +++ L   G    A  +     + G 
Sbjct: 601 HCDVGNTVEALSTFKCMLE---KGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGV 657

Query: 487 LPRQF 491
           +P  F
Sbjct: 658 VPDVF 662



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/410 (25%), Positives = 190/410 (46%), Gaps = 44/410 (10%)

Query: 102 SPSSFDHAIDLAA--RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           +PS F +++ ++      D +    ++ +M    + P    +  + + YV   + + A++
Sbjct: 448 TPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIE 507

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA----------------------YNLF- 196
           +   M  +G    L  +N ++  LC+ KKVE+A                       NL+ 
Sbjct: 508 LLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYS 567

Query: 197 ---------KVFRGKFKADVISYNVI----ANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
                    + F+    + ++  NVI      G C V  T +AL   K M+++GL P++ 
Sbjct: 568 KSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIR 627

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            Y+ ++    + G+ +EA   FL+  K     DV  Y +++ GF   G+I++A  ++D M
Sbjct: 628 AYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEM 687

Query: 304 VNGGVLPSVATYNAMIQV--LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
           ++ G+ P++  YN +I     CK  ++  A  +F+EM+ KG  P+   Y ++I G    G
Sbjct: 688 LHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEG 747

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
            +E+AL      +      ++  +N LI  FC  G++    ELF+ M      PN+ TY 
Sbjct: 748 NLEKALSLFHEAQQKSV-GSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYT 806

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
           ILI +     K++ +  A +L ++M  R  +P   T+  +L     IGN+
Sbjct: 807 ILIDAY---GKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNR 853



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 183/377 (48%), Gaps = 5/377 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  I   A+  +     +L + M    + P   T+ ++ + Y+ +    +A ++   M
Sbjct: 383 TYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEM 442

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
                  S  +++ ++  LC    ++KA  +  ++ R   K +V  Y  +   +    R 
Sbjct: 443 KARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRY 502

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
             A+E+LK M+  G+ P+L  YN ++ G  RA ++EEA    ++M ++  + +  TY   
Sbjct: 503 EMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAF 562

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++ +   GEI+ A   F  M++ G++P+   Y  +I+  C   +   A+  F+ M+ KG 
Sbjct: 563 INLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGL 622

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
           +P+   Y+ +I  L   G+ + A+    +       P+V  YN LI  FC  G+IE+  +
Sbjct: 623 IPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQ 682

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           L+++M      PN+  YN LI+  +   KS +L  A KL  EM+ +G  P  + +  +++
Sbjct: 683 LYDEMLHNGINPNIVVYNTLIND-YGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILID 741

Query: 464 GLLLIGNQGLAKEILRL 480
           G    G +G  ++ L L
Sbjct: 742 G---CGKEGNLEKALSL 755



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 106/429 (24%), Positives = 181/429 (42%), Gaps = 39/429 (9%)

Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           AH+  +F   I+L ++  + +        M S  + P    + I+ + +   G    A+ 
Sbjct: 556 AHTYGAF---INLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALS 612

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWC 218
            F  M E G    + +++ I+  L K  K ++A  +F K  +     DV  YN + +G+C
Sbjct: 613 TFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFC 672

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK--GYFRAGQIEEAWRFFLEMKKRKCEID 276
                 KA ++  EM+  G+NPN+  YN ++   GY ++G + EA++ F EM  +    D
Sbjct: 673 KEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPD 732

Query: 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE 336
              Y  ++ G G  G +++A ++F       V  S++ +N++I   CK   V  A  +F+
Sbjct: 733 GYIYCILIDGCGKEGNLEKALSLFHEAQQKSV-GSLSAFNSLIDSFCKHGKVIEARELFD 791

Query: 337 EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
           +MV K   PN  TY ++I        ME A +    M+     PN  TY  L+  +   G
Sbjct: 792 DMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIG 851

Query: 397 EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS------------------DDLLV 438
              + + LF+ M +     +   Y ++ S+     KS                  DD+  
Sbjct: 852 NRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFD 911

Query: 439 A--------------GKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484
           A               +LL EM          T N +L G    GN+  A ++L +  R 
Sbjct: 912 ALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRL 971

Query: 485 GRLPRQFKL 493
           G +P    L
Sbjct: 972 GWVPTSLSL 980



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 141/332 (42%), Gaps = 37/332 (11%)

Query: 194 NLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
           +L + +R    +++  +++  + + ++   N+A  V    +  G  P L   N +++   
Sbjct: 159 SLVRCYREFGGSNLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLL 218

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR---------------- 297
           +A  +   W+ +  M + K   DV TYT ++     VG++ + +                
Sbjct: 219 KANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKECKPNLFT 278

Query: 298 -NVFDG-----------------MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
            N F G                 M+  G+ P   TY  ++   CK+   + A L+FE M 
Sbjct: 279 YNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMP 338

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             G  PN  TY  +I G    G +E AL     M     + NV TYN +I     AGE+ 
Sbjct: 339 SSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMA 398

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
           + + LF +M      P+  TYN+LI       KS D+  A +LL EM  R   P  FT++
Sbjct: 399 KAMSLFNEMLMAGIEPDTWTYNLLIDGYL---KSHDMAKACELLAEMKARKLTPSPFTYS 455

Query: 460 RVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
            +++GL    +   A E+L    R G  P  F
Sbjct: 456 VLISGLCHSSDLQKANEVLDQMIRNGVKPNVF 487


>gi|449530582|ref|XP_004172273.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 102/317 (32%), Positives = 166/317 (52%), Gaps = 5/317 (1%)

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           SFN  LDLL K   +++ +  F  + G+ + DV S+ +    +C     +K  E+L +M 
Sbjct: 75  SFNNALDLLAKSGNLDRTWGFFTEYLGRTQFDVYSFWITIKAFCENGNVSKGFELLAQME 134

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
             G++PN+  Y I+++   R G I++A   F  M       +   YT +++GF   G  K
Sbjct: 135 TMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKK 194

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
               ++  M   GVLP++ TYN++I   C+   +  A  VF+E+  +G   N+ TYN++I
Sbjct: 195 DGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILI 254

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG-SGVC 413
            GLC  G++ +A   + RMK     P  +T+N+L+   C+ G++++ L   EK+   G+C
Sbjct: 255 GGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLC 314

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGL 473
            P L TYNILIS      K  +  V  +L+ EM DRG  P K T+  ++N  +   +   
Sbjct: 315 -PTLVTYNILISGF---SKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEK 370

Query: 474 AKEILRLQSRCGRLPRQ 490
           A E+  L  R G +P Q
Sbjct: 371 AYEMFHLMKRIGLVPDQ 387



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 171/367 (46%), Gaps = 6/367 (1%)

Query: 90  FNILSYHPTYAHSPSSFDHAIDLAARLR--DYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
           F +L+   T   SP+ F + I + A  R  D      +  RM  L L   Q  + I+   
Sbjct: 127 FELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMING 186

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKAD 206
           +   G      +++  M   G   +L ++N+++   C++ K+  A+ +F ++ +     +
Sbjct: 187 FFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACN 246

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
            ++YN++  G C   + +KA  +L+ M    +NP   T+N+++ G    GQ+++A  +  
Sbjct: 247 AVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLE 306

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           ++K       +VTY  ++ GF  VG       +   M + G+ PS  TY  ++    + D
Sbjct: 307 KLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSD 366

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            +E A  +F  M   G +P+  TY V+I GLC  G M  A +    M +   +PN   YN
Sbjct: 367 DIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYN 426

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            +I  +C      + L+  E+M      PN+ +Y   IS++ +  K    + A +LL EM
Sbjct: 427 TMINGYCKECNSYKALKFLEEMVKNGVTPNVASY---ISTIQILCKDGKSIEAKRLLKEM 483

Query: 447 VDRGFMP 453
            + G  P
Sbjct: 484 TEAGLKP 490



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 172/371 (46%), Gaps = 13/371 (3%)

Query: 100 AHSPSSF--DHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQ---KTFAIIAERYVSAGKA 154
            HSPSSF  ++A+DL A+  +    W          LG TQ    +F I  + +   G  
Sbjct: 68  GHSPSSFSFNNALDLLAKSGNLDRTWGFFTEY----LGRTQFDVYSFWITIKAFCENGNV 123

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVI 213
            +  ++   M   G   ++  +  +++  C+   +++A  +F         A+   Y ++
Sbjct: 124 SKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIM 183

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
            NG+          E+ ++M   G+ PNL TYN ++  Y R G++  A++ F E+ KR  
Sbjct: 184 INGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGV 243

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
             + VTY  ++ G    G++ +A  + + M    + P+  T+N ++  LC    ++ A+ 
Sbjct: 244 ACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALS 303

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
             E++   G  P   TYN++I G    G      E V  M+D    P+  TY IL+  F 
Sbjct: 304 YLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFV 363

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
            + +IE+  E+F  M     +P+  TY +LI  + ++    +++ A KL   MV+    P
Sbjct: 364 RSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIK---GNMVEASKLYKSMVEMHLQP 420

Query: 454 RKFTFNRVLNG 464
               +N ++NG
Sbjct: 421 NDVIYNTMING 431



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 87/180 (48%), Gaps = 12/180 (6%)

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA----LEFVG 371
           +A+I    +   +E ++  F+ MV KG+ P+S ++N  +  L  +G ++R      E++G
Sbjct: 42  DAVINASLQSQLLEQSLDGFKLMVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLG 101

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
           R + D     V ++ I I+ FC+ G + +G EL  +M +    PN+  Y ILI +     
Sbjct: 102 RTQFD-----VYSFWITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACC--- 153

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           ++ D+  A  +   M D G    ++ +  ++NG    G +    E+ +     G LP  +
Sbjct: 154 RNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLY 213


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 168/336 (50%), Gaps = 4/336 (1%)

Query: 131 SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190
           ++ + P   T+  +       G+ D A+ +   M   GC   + ++  +L+  CK    +
Sbjct: 145 AMPMEPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYK 204

Query: 191 KAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL 249
           +A  L    R K  A D+++YNV+ NG C   R + A+E LK +   G  PN  +YNIVL
Sbjct: 205 QAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVL 264

Query: 250 KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
           KG   A + E+A +   EM ++    +VVT+  ++      G ++ A  + D +   G  
Sbjct: 265 KGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCT 324

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           P+  +YN ++   CK+  ++ A+   E MV  G  P+  +YN ++  LC  GE++ A+E 
Sbjct: 325 PNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVEL 384

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
           + ++KD  C P + +YN +I     AG+ E  LEL  +M +    P++ TY+ + S +  
Sbjct: 385 LHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCR 444

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
             + ++ +   K   ++ D G  P    +N +L GL
Sbjct: 445 EGRIEEAI---KAFCKVQDMGIRPNTVLYNAILLGL 477



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 168/334 (50%), Gaps = 7/334 (2%)

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
           S  P   ++  +   Y   G+ D A ++  +M          ++NT++  LC   + + A
Sbjct: 115 SCEPDVMSYNAMVAGYCVTGQLDNARRLVAAMPME---PDTYTYNTLIRGLCGRGRTDNA 171

Query: 193 YNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
             +   + R     DV++Y ++    C      +A+++L EM D+G  P++ TYN+V+ G
Sbjct: 172 LAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNG 231

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
             + G++++A  F   +    CE + V+Y  ++ G       + A  +   M   G  P+
Sbjct: 232 ICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPN 291

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
           V T+N +I  LC++  VE A+ + +++   G  PNS +YN ++   C   +M+RA+ FV 
Sbjct: 292 VVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVE 351

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
            M    C P++ +YN L+   C  GE++  +EL  ++    C P L +YN +I  +    
Sbjct: 352 LMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAG 411

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           K+++ L   +LL EMV +G  P   T++ + +GL
Sbjct: 412 KTEEAL---ELLNEMVTKGLQPDIITYSTISSGL 442



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 171/353 (48%), Gaps = 8/353 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+ I+ E         +AVK+   M + GC   + ++N +++ +C+E +V+ A   
Sbjct: 185 PDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEF 244

Query: 196 FKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            K       + + +SYN++  G C  +R   A +++ EM  +G  PN+ T+N+++    R
Sbjct: 245 LKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCR 304

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G +E A     ++ K  C  + ++Y  I+H F    ++ RA    + MV+ G  P + +
Sbjct: 305 RGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVS 364

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN ++  LC+   V+ A+ +  ++  KG  P   +YN VI GL   G+ E ALE +  M 
Sbjct: 365 YNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMV 424

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
               +P++ TY+ +    C  G IE  ++ F K+      PN   YN ++  +  R+ + 
Sbjct: 425 TKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATH 484

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR-CGR 486
             +    L   MV  G MP + T+  ++ GL     +GL KE   + +  C R
Sbjct: 485 SAI---DLFTYMVSNGCMPNESTYTILIEGL---AYEGLVKEAREMMAELCSR 531



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 165/352 (46%), Gaps = 7/352 (1%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           Y+    L+  M+     P   T+ ++       G+ D A++   S+  +GC  +  S+N 
Sbjct: 203 YKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNI 262

Query: 179 ILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           +L  LC  ++ E A  L  ++ R     +V+++N++ +  C       A+E+L ++   G
Sbjct: 263 VLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYG 322

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
             PN  +YN +L  + +  +++ A  F   M    C  D+V+Y T++      GE+  A 
Sbjct: 323 CTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAV 382

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
            +   + + G  P + +YN +I  L K    E A+ +  EMV KG  P+  TY+ +  GL
Sbjct: 383 ELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGL 442

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
           C  G +E A++   +++D    PN   YN ++   C        ++LF  M S  C+PN 
Sbjct: 443 CREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNE 502

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN---RVLNGLL 466
            TY ILI  +       +   A +++ E+  RG + +        R+L+G +
Sbjct: 503 STYTILIEGLAYEGLVKE---AREMMAELCSRGVVSKTLVNKGAIRLLDGTM 551



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 141/276 (51%), Gaps = 16/276 (5%)

Query: 219 LVKRTN--KALEVLKEMVDRGLNPNLT-TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
           LV+R +  +A+ +++ M   GL P+       ++K    +G+  EA R         CE 
Sbjct: 66  LVRRGDLEEAIRLVESMA--GLEPSAAGPCAALIKKLCASGRTAEARRVLA-----SCEP 118

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
           DV++Y  +V G+ V G++  AR +   M    + P   TYN +I+ LC +   +NA+ V 
Sbjct: 119 DVMSYNAMVAGYCVTGQLDNARRLVAAM---PMEPDTYTYNTLIRGLCGRGRTDNALAVL 175

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
           ++M+ +G +P+  TY +++   C     ++A++ +  M+D  C P++ TYN+++   C  
Sbjct: 176 DDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQE 235

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
           G ++  +E  + + S  C PN  +YNI++  +   ++ +D   A KL+ EM  +G  P  
Sbjct: 236 GRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWED---AEKLMAEMSRKGRPPNV 292

Query: 456 FTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
            TFN +++ L   G    A EIL    + G  P   
Sbjct: 293 VTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSL 328



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 122/262 (46%), Gaps = 4/262 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  I    R         ++ ++      P   ++  I   +    K DRA+     M
Sbjct: 294 TFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELM 353

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADV-ISYNVIANGWCLVKRT 223
              GC   + S+NT+L  LC+  +V+ A  L    + K    V ISYN + +G     +T
Sbjct: 354 VSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKT 413

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +ALE+L EMV +GL P++ TY+ +  G  R G+IEEA + F +++      + V Y  I
Sbjct: 414 EEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAI 473

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G         A ++F  MV+ G +P+ +TY  +I+ L  +  V+ A  +  E+  +G 
Sbjct: 474 LLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLAYEGLVKEAREMMAELCSRGV 533

Query: 344 MPNSTTYNVVIR---GLCHTGE 362
           +  +      IR   G  HT +
Sbjct: 534 VSKTLVNKGAIRLLDGTMHTSK 555


>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
          Length = 615

 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 112/359 (31%), Positives = 181/359 (50%), Gaps = 20/359 (5%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLS-MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV 198
           TF  + +   +  +   A+ I L  M E GC   + S+N +L  LC E + ++A  L  +
Sbjct: 129 TFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHM 188

Query: 199 FR----GKFKADVISYNVIANGW--------CLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
                 G    DV+SYN + NG+           +  +KA+EVL  MV  G+ P+  TYN
Sbjct: 189 MADDRGGGSPPDVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYN 248

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
            +L GY  +GQ +EA     +M+    E +VVTY+++++     G    AR +FD M   
Sbjct: 249 SILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKR 308

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G+ P +ATY  ++Q  CK+  V  +  +F+ MV  G  P+  TYN +I G C  G+M+ A
Sbjct: 309 GLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEA 368

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
            + +  M     +P++ TY  LI  +C    ++  L LF++M S    PN+ TYNI++  
Sbjct: 369 TKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQG 428

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL-QSRC 484
           +F  +++     A +L + +   G      T+N +L+GL       L  E LR+ Q+ C
Sbjct: 429 LFHTRRT---AAAKELYVSITKSGTQLELSTYNIILHGLC---KNNLTDEALRMFQNLC 481



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 159/327 (48%), Gaps = 4/327 (1%)

Query: 126 VHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185
           + +M+S  + P   T++ +       G++  A KIF SM + G    + ++ T+L   CK
Sbjct: 267 LKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCK 326

Query: 186 EKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
           E +V ++  LF +  R   K D+I+YN + +G CL  + ++A ++L  MV  G+ P++ T
Sbjct: 327 EGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVT 386

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           Y  ++ GY R  ++++A   F EM       +++TY  I+ G         A+ ++  + 
Sbjct: 387 YGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSIT 446

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
             G    ++TYN ++  LCK +  + A+ +F+ +        + T+N++I  L   G M+
Sbjct: 447 KSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMD 506

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
            A +       +   P+V+TY+++     + G +E   +LF  M    C  +    N ++
Sbjct: 507 EAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIV 566

Query: 425 SSMFVRKKSDDLLVAGKLLIEMVDRGF 451
             +  R    D+  AG  L  + ++ F
Sbjct: 567 RKLLQRG---DITRAGTYLFMIDEKHF 590



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 160/336 (47%), Gaps = 4/336 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+  I   Y S+G+   A+     M   G   ++ +++++++ LCK  +  +A  +
Sbjct: 242 PDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKI 301

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F     +  + D+ +Y  +  G C   R  ++ ++   MV  G+ P++ TYN ++ G   
Sbjct: 302 FDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCL 361

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
           AG+++EA +    M     + D+VTY T+++G+  V  +  A  +F  MV+ GV P++ T
Sbjct: 362 AGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIIT 421

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN ++Q L        A  ++  +   G     +TYN+++ GLC     + AL     + 
Sbjct: 422 YNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLC 481

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
             + +   +T+NI+I      G ++   +LF    +   +P++ TY+++  ++  +   +
Sbjct: 482 LTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLE 541

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
           +L     L + M + G        N ++  LL  G+
Sbjct: 542 EL---DDLFLSMEENGCSADSRMLNSIVRKLLQRGD 574



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 123/288 (42%), Gaps = 50/288 (17%)

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG----------- 286
           + P + TY I++    RAG+++  +     + K+   +D +T+T ++ G           
Sbjct: 88  VTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAM 147

Query: 287 ---------FGVVGEIKRARNVFDGMVN-------------------GGVLPSVATYNAM 318
                     G + ++    N+  G+ +                   GG  P V +YN +
Sbjct: 148 DIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTV 207

Query: 319 --------IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
                   IQ      +++ A+ V   MV  G MP+  TYN ++ G C +G+ + A+  +
Sbjct: 208 LNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTL 267

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
            +M+ D  EPNV TY+ L+ Y C  G      ++F+ M      P++ TY  L+      
Sbjct: 268 KKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQG---H 324

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
            K   ++ + KL   MV  G  P   T+N +++G  L G    A ++L
Sbjct: 325 CKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLL 372



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 9/168 (5%)

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
           G V P+V TY  +I   C+   ++        +V KG+  ++ T+  +++GLC       
Sbjct: 86  GKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSD 145

Query: 366 ALEFV-GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS---GVCLPNLDTYN 421
           A++ V  RM +  C P+V +YN L++  CD    +  LEL   M     G   P++ +YN
Sbjct: 146 AMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYN 205

Query: 422 ILISSMFVRKKSDDLLV-----AGKLLIEMVDRGFMPRKFTFNRVLNG 464
            +++  F       L       A ++L  MV  G MP   T+N +L+G
Sbjct: 206 TVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHG 253


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 113/355 (31%), Positives = 176/355 (49%), Gaps = 4/355 (1%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           I+   R ++    + L+  MK   L PT  T+++I       G       I   M  +G 
Sbjct: 388 IEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGL 447

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALE 228
           + +   + T++    KE +VE++  + +  R +    DV  YN +  G+C  KR  +A  
Sbjct: 448 KPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEART 507

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
            L EM++R L PN  TY   + GY +AG++E A R+F EM       +V  YT ++ G  
Sbjct: 508 YLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHC 567

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G +  A +VF  +++  VL  V TY+ +I  L +   +  A  +F E+  KG +PN+ 
Sbjct: 568 KEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAF 627

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           TYN +I G C  G +++A + +  M      P++ TYNILI   C AGEIER   LF+ +
Sbjct: 628 TYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDI 687

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
                 PN  TY  ++       KS +   A +LL EM+ RG  P  F +N +LN
Sbjct: 688 EGRGLTPNCVTYAAMVDGYC---KSKNPTAAFQLLEEMLLRGVPPDAFIYNVILN 739



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/359 (28%), Positives = 183/359 (50%), Gaps = 8/359 (2%)

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
           A R+ + RT    +  M    L P   T+    + Y  AG+ + A + F  M   G   +
Sbjct: 499 AKRMEEARTY---LMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPN 555

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLK 231
           +  +  +++  CKE  V +A+++F+ +   +   DV +Y+V+ +G     + ++A  +  
Sbjct: 556 VGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFS 615

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
           E+ ++GL PN  TYN ++ G  + G +++A +   EM  +    D+VTY  ++ G    G
Sbjct: 616 ELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAG 675

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
           EI+RA+N+FD +   G+ P+  TY AM+   CK  +   A  + EEM+ +G  P++  YN
Sbjct: 676 EIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYN 735

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
           V++   C   + E+AL+    M +      V ++N LI  +C +G+++    L E+M   
Sbjct: 736 VILNFCCKEEKFEKALDLFQEMLEKGFASTV-SFNTLIEGYCKSGKLQEANHLLEEMIEK 794

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
             +PN  TY  LI       K+  +  A +L +EM +R  MP   T+  +L+G   IGN
Sbjct: 795 QFIPNHVTYTSLIDH---NCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGN 850



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/424 (24%), Positives = 195/424 (45%), Gaps = 33/424 (7%)

Query: 89  FFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERY 148
           + N++S H    +   +    +++  + R       L   M    L P   T+ I+   +
Sbjct: 227 YTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGF 286

Query: 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL-FKVFRGKFKADV 207
               ++  A  + L M + G +    ++N ++D   ++  +E+A+ +  ++     +A++
Sbjct: 287 CMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANL 346

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           I +N + NG C   +  KALE+++EM+++G+ P+  TY+++++G+ R   +  A+    E
Sbjct: 347 IIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDE 406

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           MKKRK    V+TY+ I++G    G ++    +   MV  G+ P+   Y  ++    K+  
Sbjct: 407 MKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGR 466

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
           VE + ++ E M  +G +P+   YN +I G C    ME A  ++  M +    PN  TY  
Sbjct: 467 VEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGA 526

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS----------------MFVRK 431
            I  +  AGE+E     F +M S   LPN+  Y  LI                  +  R+
Sbjct: 527 FIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRR 586

Query: 432 KSDD-----LLVAG-----------KLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
              D     +L+ G            +  E+ ++G +P  FT+N +++G    GN   A 
Sbjct: 587 VLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKAS 646

Query: 476 EILR 479
           ++L 
Sbjct: 647 QLLE 650



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 115/421 (27%), Positives = 186/421 (44%), Gaps = 62/421 (14%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           ++V   +S +  P    F ++ + Y   G    AV +FL       R SL S N++L  L
Sbjct: 140 SIVKCYRSCNGSPNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDL 199

Query: 184 CKEKKVEKAYNLFKVFRG----KFKADVISYNVIANGWCLV------KRT---------- 223
            K  KVE     +KVF G    K   DV +Y  + +  C V      KR           
Sbjct: 200 LKGNKVEL---FWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARL 256

Query: 224 -NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
            ++A+E+ + MVD+GL P+L TY+I++ G+    +  EA    LEM     + + +TY  
Sbjct: 257 LDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNA 316

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++ GF   G+I++A  + D MV  G+  ++  +N ++  +CK   +E A+ + +EM+ KG
Sbjct: 317 LIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKG 376

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC--------- 393
             P+S TY+++I G C    M RA E +  MK  +  P V TY+++I   C         
Sbjct: 377 VEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTN 436

Query: 394 --------------------------DAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
                                       G +E    + E+M     LP++  YN LI   
Sbjct: 437 AILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGF 496

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
              K+ ++   A   L+EM++R   P   T+   ++G    G   +A         CG L
Sbjct: 497 CKAKRMEE---ARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVL 553

Query: 488 P 488
           P
Sbjct: 554 P 554



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/433 (22%), Positives = 187/433 (43%), Gaps = 43/433 (9%)

Query: 90  FNILSYHPTYAHSPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
           F +L        +P+   ++  I+   R  + +    ++  M    L P    +  +   
Sbjct: 401 FELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTA 460

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKAD 206
           +   G+ + +  I   M E G    +  +N+++   CK K++E+A   L ++   + + +
Sbjct: 461 HAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPN 520

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
             +Y    +G+        A     EM+  G+ PN+  Y  +++G+ + G + EA+  F 
Sbjct: 521 AHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFR 580

Query: 267 EMKKRKCEIDVVTYTTIVHG----------FGVV-------------------------G 291
            +  R+   DV TY+ ++HG          FG+                          G
Sbjct: 581 FILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQG 640

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
            + +A  + + M   G+ P + TYN +I  LCK   +E A  +F+++ G+G  PN  TY 
Sbjct: 641 NVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYA 700

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
            ++ G C +     A + +  M      P+   YN+++ + C   + E+ L+LF++M   
Sbjct: 701 AMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEK 760

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
               +  ++N LI       KS  L  A  LL EM+++ F+P   T+  +++     G  
Sbjct: 761 -GFASTVSFNTLIEGYC---KSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMM 816

Query: 472 GLAKEI-LRLQSR 483
           G AK + L +Q R
Sbjct: 817 GEAKRLWLEMQER 829



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 135/276 (48%), Gaps = 8/276 (2%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   +  +      L   ++   L P   T+A + + Y  +     A ++   M
Sbjct: 663 TYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEM 722

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTN 224
              G       +N IL+  CKE+K EKA +LF+    K  A  +S+N +  G+C   +  
Sbjct: 723 LLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQ 782

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           +A  +L+EM+++   PN  TY  ++    +AG + EA R +LEM++R       TYT+++
Sbjct: 783 EANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLL 842

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
           HG+  +G +     +F+ MV  G+ P   TY  MI   C++ +V  A  + +E++ KG M
Sbjct: 843 HGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKG-M 901

Query: 345 PNST-------TYNVVIRGLCHTGEMERALEFVGRM 373
           P  +       T +V+ RG    G M+ A E +  M
Sbjct: 902 PMKSGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSM 937



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 170/373 (45%), Gaps = 29/373 (7%)

Query: 116 LRDYRTVWTLVH----------------RMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           L+D +T   L+H                 ++   L P   T+  +       G  D+A +
Sbjct: 588 LQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQ 647

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWC 218
           +   M   G    + ++N ++D LCK  ++E+A NLF    G+    + ++Y  + +G+C
Sbjct: 648 LLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYC 707

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
             K    A ++L+EM+ RG+ P+   YN++L    +  + E+A   F EM + K     V
Sbjct: 708 KSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLE-KGFASTV 766

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           ++ T++ G+   G+++ A ++ + M+    +P+  TY ++I   CK   +  A  ++ EM
Sbjct: 767 SFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEM 826

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
             +  MP + TY  ++ G  + G M         M     EP+  TY ++I  +C  G +
Sbjct: 827 QERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNV 886

Query: 399 ERGLELFEK-------MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
               +L ++       M SG  L  L T +++     +    D+   A ++L  MV  G+
Sbjct: 887 MEACKLKDEILVKGMPMKSGFRL-GLPTCSVIARGFQIAGNMDE---AAEVLRSMVKFGW 942

Query: 452 MPRKFTFNRVLNG 464
           +    +   +++G
Sbjct: 943 VSNTTSLGDLVDG 955



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 80/195 (41%), Gaps = 14/195 (7%)

Query: 81  NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKT 140
           NH L+ +     +  H TY    S  DH    A  + + + +W     M+  ++ PT KT
Sbjct: 785 NHLLEEMIEKQFIPNHVTYT---SLIDHNCK-AGMMGEAKRLWL---EMQERNVMPTAKT 837

Query: 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV-- 198
           +  +   Y + G       +F  M   G      ++  ++D  C+E  V +A  L     
Sbjct: 838 YTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEIL 897

Query: 199 -----FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
                 +  F+  + + +VIA G+ +    ++A EVL+ MV  G   N T+   ++ G  
Sbjct: 898 VKGMPMKSGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDGNQ 957

Query: 254 RAGQIEEAWRFFLEM 268
                E++     +M
Sbjct: 958 NGANSEDSDNLLKQM 972


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 113/355 (31%), Positives = 176/355 (49%), Gaps = 4/355 (1%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           I+   R ++    + L+  MK   L PT  T+++I       G       I   M  +G 
Sbjct: 397 IEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGL 456

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALE 228
           + +   + T++    KE +VE++  + +  R +    DV  YN +  G+C  KR  +A  
Sbjct: 457 KPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEART 516

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
            L EM++R L PN  TY   + GY +AG++E A R+F EM       +V  YT ++ G  
Sbjct: 517 YLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHC 576

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G +  A +VF  +++  VL  V TY+ +I  L +   +  A  +F E+  KG +PN+ 
Sbjct: 577 KEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAF 636

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           TYN +I G C  G +++A + +  M      P++ TYNILI   C AGEIER   LF+ +
Sbjct: 637 TYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDI 696

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
                 PN  TY  ++       KS +   A +LL EM+ RG  P  F +N +LN
Sbjct: 697 EGRGLTPNCVTYAAMVDGYC---KSKNPTAAFQLLEEMLLRGVPPDAFIYNVILN 748



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 180/367 (49%), Gaps = 4/367 (1%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           W +   M +  + P   T+  +   +   G    A ++ L M E GC  +L ++N I+  
Sbjct: 200 WKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGG 259

Query: 183 LCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           LC+ + +++A  L +    K    D+ +Y+++ NG+C+ KR+ +A  +L EM+D GL P 
Sbjct: 260 LCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPE 319

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
             TYN ++ G+ R G IE+A+R   EM     E +++ + T+++G    G++++A  +  
Sbjct: 320 PITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQ 379

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M+  GV P   TY+ +I+  C+  ++  A  + +EM  +   P   TY+V+I GLC  G
Sbjct: 380 EMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCG 439

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
            ++     +  M  +  +PN   Y  L+      G +E    + E+M     LP++  YN
Sbjct: 440 NLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYN 499

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481
            LI      K+ ++   A   L+EM++R   P   T+   ++G    G   +A       
Sbjct: 500 SLIIGFCKAKRMEE---ARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEM 556

Query: 482 SRCGRLP 488
             CG LP
Sbjct: 557 LSCGVLP 563



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/359 (28%), Positives = 183/359 (50%), Gaps = 8/359 (2%)

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
           A R+ + RT    +  M    L P   T+    + Y  AG+ + A + F  M   G   +
Sbjct: 508 AKRMEEARTY---LMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPN 564

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLK 231
           +  +  +++  CKE  V +A+++F+ +   +   DV +Y+V+ +G     + ++A  +  
Sbjct: 565 VGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFS 624

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
           E+ ++GL PN  TYN ++ G  + G +++A +   EM  +    D+VTY  ++ G    G
Sbjct: 625 ELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAG 684

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
           EI+RA+N+FD +   G+ P+  TY AM+   CK  +   A  + EEM+ +G  P++  YN
Sbjct: 685 EIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYN 744

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
           V++   C   + E+AL+    M +      V ++N LI  +C +G+++    L E+M   
Sbjct: 745 VILNFCCKEEKFEKALDLFQEMLEKGFASTV-SFNTLIEGYCKSGKLQEANHLLEEMIEK 803

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
             +PN  TY  LI       K+  +  A +L +EM +R  MP   T+  +L+G   IGN
Sbjct: 804 QFIPNHVTYTSLIDH---NCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGN 859



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 110/372 (29%), Positives = 178/372 (47%), Gaps = 10/372 (2%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           ++V   +S +  P    F ++ + Y   G    AV +FL       R SL S N++L  L
Sbjct: 131 SIVKCYRSCNGSPNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDL 190

Query: 184 CKEKKVEKAYNLFKVFRG----KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
            K  KVE     +KVF G    K   DV +Y  + +  C V     A  VL EM ++G +
Sbjct: 191 LKGNKVEL---FWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCS 247

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           PNL TYN+++ G  RA  ++EA      M  +    D+ TY  +++GF +    + A+ +
Sbjct: 248 PNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLM 307

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
              M++ G+ P   TYNA+I    ++  +E A  + +EMV  G   N   +N ++ G+C 
Sbjct: 308 LLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCK 367

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419
            G+ME+ALE +  M +   EP+ QTY++LI   C    + R  EL ++M      P + T
Sbjct: 368 AGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLT 427

Query: 420 YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           Y+++I+ +    +  +L     +L EMV  G  P    +  ++      G    ++ IL 
Sbjct: 428 YSVIINGLC---RCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILE 484

Query: 480 LQSRCGRLPRQF 491
                G LP  F
Sbjct: 485 RMREQGILPDVF 496



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/399 (25%), Positives = 186/399 (46%), Gaps = 35/399 (8%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
           ARL D      L   M    L P   T+ I+   +    ++  A  + L M + G +   
Sbjct: 263 ARLLD--EAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEP 320

Query: 174 NSFNTILDLLCKEKKVEKAYNL-FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
            ++N ++D   ++  +E+A+ +  ++     +A++I +N + NG C   +  KALE+++E
Sbjct: 321 ITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQE 380

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M+++G+ P+  TY+++++G+ R   +  A+    EMKKRK    V+TY+ I++G    G 
Sbjct: 381 MMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGN 440

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           ++    +   MV  G+ P+   Y  ++    K+  VE + ++ E M  +G +P+   YN 
Sbjct: 441 LQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNS 500

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           +I G C    ME A  ++  M +    PN  TY   I  +  AGE+E     F +M S  
Sbjct: 501 LIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCG 560

Query: 413 CLPNLDTYNILISS----------------MFVRKKSDD-----LLVAG----------- 440
            LPN+  Y  LI                  +  R+   D     +L+ G           
Sbjct: 561 VLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAF 620

Query: 441 KLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
            +  E+ ++G +P  FT+N +++G    GN   A ++L 
Sbjct: 621 GIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLE 659



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 147/304 (48%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   +  +      L   ++   L P   T+A + + Y  +     A ++   M
Sbjct: 672 TYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEM 731

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTN 224
              G       +N IL+  CKE+K EKA +LF+    K  A  +S+N +  G+C   +  
Sbjct: 732 LLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQ 791

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           +A  +L+EM+++   PN  TY  ++    +AG + EA R +LEM++R       TYT+++
Sbjct: 792 EANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLL 851

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
           HG+  +G +     +F+ MV  G+ P   TY  MI   C++ +V  A  + +E++ KG  
Sbjct: 852 HGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMP 911

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
            +   Y+ +I+ LC   E    L+ +  + +      + T +++ R F  AG ++   E+
Sbjct: 912 MSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNMDEAAEV 971

Query: 405 FEKM 408
              M
Sbjct: 972 LRSM 975



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/416 (22%), Positives = 181/416 (43%), Gaps = 41/416 (9%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   I+   R  + +    ++  M    L P    +  +   +   G+ + +  I   M
Sbjct: 427 TYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERM 486

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRT 223
            E G    +  +N+++   CK K++E+A   L ++   + + +  +Y    +G+      
Sbjct: 487 REQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEM 546

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
             A     EM+  G+ PN+  Y  +++G+ + G + EA+  F  +  R+   DV TY+ +
Sbjct: 547 EIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVL 606

Query: 284 VHG----------FGVV-------------------------GEIKRARNVFDGMVNGGV 308
           +HG          FG+                          G + +A  + + M   G+
Sbjct: 607 IHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGI 666

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
            P + TYN +I  LCK   +E A  +F+++ G+G  PN  TY  ++ G C +     A +
Sbjct: 667 NPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQ 726

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
            +  M      P+   YN+++ + C   + E+ L+LF++M       +  ++N LI    
Sbjct: 727 LLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEK-GFASTVSFNTLIEGYC 785

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI-LRLQSR 483
              KS  L  A  LL EM+++ F+P   T+  +++     G  G AK + L +Q R
Sbjct: 786 ---KSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQER 838



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 175/379 (46%), Gaps = 9/379 (2%)

Query: 90  FNILSYHPTYAHSPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
           F I S        P++F +   I  + +  +      L+  M    + P   T+ I+ + 
Sbjct: 620 FGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDG 679

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKA 205
              AG+ +RA  +F  +   G   +  ++  ++D  CK K    A+ L +  + RG    
Sbjct: 680 LCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRG-VPP 738

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           D   YNVI N  C  ++  KAL++ +EM+++G   +  ++N +++GY ++G+++EA    
Sbjct: 739 DAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF-ASTVSFNTLIEGYCKSGKLQEANHLL 797

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
            EM +++   + VTYT+++      G +  A+ ++  M    V+P+  TY +++      
Sbjct: 798 EEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNI 857

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
            ++     +FEEMV KG  P+  TY V+I   C  G +  A +    +       +V  Y
Sbjct: 858 GNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAY 917

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           + LI+  C   E    L+L  ++G       L T +++     +    D+   A ++L  
Sbjct: 918 DALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNMDE---AAEVLRS 974

Query: 446 MVDRGFMPRKFTFNRVLNG 464
           MV  G++    +   +++G
Sbjct: 975 MVKFGWVSNTTSLGDLVDG 993



 Score = 46.6 bits (109), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 41/193 (21%), Positives = 83/193 (43%), Gaps = 12/193 (6%)

Query: 77   KRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGP 136
            KRLW      +   N++    TY    +S  H       + +   V  L   M +  + P
Sbjct: 829  KRLW----LEMQERNVMPTAKTY----TSLLHGYH---NIGNMSEVSALFEEMVAKGIEP 877

Query: 137  TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF 196
             + T+ ++ + Y   G    A K+   +   G   S+ +++ ++  LCK+++  +   L 
Sbjct: 878  DKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLL 937

Query: 197  -KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
             ++    F+  + + +VIA G+ +    ++A EVL+ MV  G   N T+   ++ G    
Sbjct: 938  NEIGESGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDGNQNG 997

Query: 256  GQIEEAWRFFLEM 268
               E++     +M
Sbjct: 998  ANSEDSDNLLKQM 1010


>gi|297803282|ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315361|gb|EFH45784.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 707

 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 113/387 (29%), Positives = 190/387 (49%), Gaps = 20/387 (5%)

Query: 96  HPTYAHSPSSFDHAIDLAARL--------------RDYRTVWTLVHRMKSLSLGPTQKTF 141
           +P   ++ S F  A+D    L              R++   ++   +M          + 
Sbjct: 51  NPQLKNAVSVFQQAVDSGGSLSFAGNNLMATLVRSRNHEVAFSFYRKMLETDTFINFVSL 110

Query: 142 AIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR- 200
           + + E +V   K   A  +   M + G   ++ ++N +L  LC+  +  KA +L +  R 
Sbjct: 111 SGLLECFVQMRKTGFAHGVLALMLKRGFAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQ 170

Query: 201 GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
                DV+SYN +  G+C  K   KAL++  EM   G + +L T+ I++  + +AG+++E
Sbjct: 171 NSLMPDVVSYNTVIRGFCEGKELEKALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDE 230

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
           A     EMK +  E D++ YT+++ GF   GE+ R + +FD ++  G  P   TYN +I+
Sbjct: 231 AMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIR 290

Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
             CK   ++ A  +FE M+ +G  PN  TY  +I GLC  G+ + AL+ +  M   + EP
Sbjct: 291 GFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEP 350

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAG 440
           NV TYNI+I   C    +   LE+ E M      P+  TYN L+  +  +   D+   A 
Sbjct: 351 NVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDE---AS 407

Query: 441 KLLIEMV-DRGFM-PRKFTFNRVLNGL 465
           KLL  M+ D  +  P   +FN +++GL
Sbjct: 408 KLLYLMLKDSSYTDPDVISFNALIHGL 434



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 167/349 (47%), Gaps = 7/349 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+ II  +         A++I   M +   R    ++N++L  LC +  +++A  L
Sbjct: 350 PNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEASKL 409

Query: 196 FKVF---RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
             +          DVIS+N + +G C   R ++AL++   +V++    ++ T NI+L   
Sbjct: 410 LYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQALDIYDLLVEKLGAGDIVTTNILLNST 469

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
            ++G + +A   + ++   K   +  TYTT++ GF   G +  A+ +   M    + PSV
Sbjct: 470 LKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGFCKTGMLNVAKGLLCKMRLSELPPSV 529

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
             YN ++  LCKK +++ A  +FEEM      P+  ++N++I G    G+++ A   +  
Sbjct: 530 FDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSFPDVISFNIMIDGSLKAGDIKSAESLLVG 589

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           M      P++ TY+ LI  F   G ++  +  F+KM      P+    + ++     + +
Sbjct: 590 MSHAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMIDSGFEPDAHICDSVLKYCISQGE 649

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL-LIGNQGLAKEILRL 480
           +D L    + + ++VD+  +  K     V++ +    GN  +AK +LR+
Sbjct: 650 TDKLT---EFVKKLVDKDVVLDKELTCTVMDYMCSSSGNMDIAKRLLRV 695



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 145/325 (44%), Gaps = 40/325 (12%)

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIAN 215
           AV +F    + G   S  + N ++  L + +  E A++ + K+       + +S + +  
Sbjct: 57  AVSVFQQAVDSGGSLSF-AGNNLMATLVRSRNHEVAFSFYRKMLETDTFINFVSLSGLLE 115

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
            +  +++T  A  VL  M+ RG   N+  YNI+LKG  R  +  +A     EM++     
Sbjct: 116 CFVQMRKTGFAHGVLALMLKRGFAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNS--- 172

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
                                           ++P V +YN +I+  C+   +E A+ + 
Sbjct: 173 --------------------------------LMPDVVSYNTVIRGFCEGKELEKALQLA 200

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
            EM G G   +  T+ ++I   C  G+M+ A+  +  MK    E ++  Y  LIR FCD 
Sbjct: 201 NEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDC 260

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
           GE++RG  LF+++      P   TYN LI       K   L  A ++   M++RG  P  
Sbjct: 261 GELDRGKALFDEVLERGDSPCAITYNTLIRGFC---KLGRLKEASEIFEFMMERGVRPNV 317

Query: 456 FTFNRVLNGLLLIGNQGLAKEILRL 480
           +T+  +++GL  +G    A ++L L
Sbjct: 318 YTYTGLIDGLCGVGKTKEALQLLNL 342



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 122/266 (45%), Gaps = 4/266 (1%)

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
           A+ V ++ VD G + +    N+ +    R+   E A+ F+ +M +    I+ V+ + ++ 
Sbjct: 57  AVSVFQQAVDSGGSLSFAGNNL-MATLVRSRNHEVAFSFYRKMLETDTFINFVSLSGLLE 115

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
            F  + +   A  V   M+  G   +V  YN +++ LC+      A+ +  EM     MP
Sbjct: 116 CFVQMRKTGFAHGVLALMLKRGFAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMP 175

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           +  +YN VIRG C   E+E+AL+    M+   C  ++ T+ ILI  FC AG+++  + L 
Sbjct: 176 DVVSYNTVIRGFCEGKELEKALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLL 235

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           ++M       +L  Y  LI          +L     L  E+++RG  P   T+N ++ G 
Sbjct: 236 KEMKHKGLEADLIVYTSLIRGFC---DCGELDRGKALFDEVLERGDSPCAITYNTLIRGF 292

Query: 466 LLIGNQGLAKEILRLQSRCGRLPRQF 491
             +G    A EI       G  P  +
Sbjct: 293 CKLGRLKEASEIFEFMMERGVRPNVY 318



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 72/152 (47%), Gaps = 1/152 (0%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177
           D      L  ++ +  + P   T+  + + +   G  + A  +   M       S+  +N
Sbjct: 474 DVNKAMELWKQISNSKIVPNSDTYTTMIDGFCKTGMLNVAKGLLCKMRLSELPPSVFDYN 533

Query: 178 TILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
            +L  LCK+  +++A+ LF+   R     DVIS+N++ +G         A  +L  M   
Sbjct: 534 CLLSSLCKKGTLDQAWRLFEEMQRDDSFPDVISFNIMIDGSLKAGDIKSAESLLVGMSHA 593

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           GL+P+L TY+ ++  + + G ++EA  FF +M
Sbjct: 594 GLSPDLFTYSKLINRFLKLGYLDEAISFFDKM 625


>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 784

 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 110/385 (28%), Positives = 188/385 (48%), Gaps = 13/385 (3%)

Query: 107 DHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE 166
           D  ID A RL+D          M++L L P   T+  +         + +  ++   M  
Sbjct: 330 DGKIDEAFRLKD---------EMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEG 380

Query: 167 HGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNK 225
            G + +  ++N ++    KE K++ A N L K+    F  D +++N + NG+C   R ++
Sbjct: 381 KGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSE 440

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
           A  ++ EM  +GL  N  T N +L       ++++A++      KR   +D V+Y T++ 
Sbjct: 441 AFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIM 500

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
           G+   G+   A  ++D M    ++PS+ TYN MI  LC     + +I    E++  G +P
Sbjct: 501 GYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVP 560

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           + TTYN +I G C  G++E+A +F  +M     +P++ T NIL+R  C  G +++ L+LF
Sbjct: 561 DETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLF 620

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
               S     +  TYN +IS +    K D    A  LL EM ++   P  +T+N +L+ L
Sbjct: 621 NTWISKGKAIDAVTYNTIISGLC---KEDRFEEAFDLLAEMEEKKLGPDCYTYNAILSAL 677

Query: 466 LLIGNQGLAKEILRLQSRCGRLPRQ 490
              G    A+E +      G+L  Q
Sbjct: 678 ADAGRMKEAEEFMSRIVEQGKLQDQ 702



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 185/377 (49%), Gaps = 7/377 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S++  +D+  +         L+  MK+  L P + TF I+   Y   G    A ++   M
Sbjct: 249 SYNTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLM 308

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRT 223
            ++     + ++N ++  LCK+ K+++A+ L       K   DV++YN + NG      +
Sbjct: 309 AQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSS 368

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            K  E++ +M  +G+ PN  TYN+V+K Y + G+++ A     +M++     D VT+ T+
Sbjct: 369 LKGFELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTL 428

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++G+   G +  A  + D M   G+  +  T N ++  LC +  +++A  +      +GY
Sbjct: 429 INGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGY 488

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
             +  +Y  +I G    G+   A++    MK+ E  P++ TYN +I   C +G+ ++ ++
Sbjct: 489 FVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSID 548

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
              ++     +P+  TYN +I   + R+    +  A +   +MV + F P  FT N +L 
Sbjct: 549 KLNELLESGLVPDETTYNTIILG-YCRE--GQVEKAFQFHNKMVKKSFKPDLFTCNILLR 605

Query: 464 GLLLIGNQGLAKEILRL 480
           GL     +G+  + L+L
Sbjct: 606 GLC---TEGMLDKALKL 619



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 169/353 (47%), Gaps = 15/353 (4%)

Query: 125 LVHRMKSLSLGP---TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
           + +RMK L L P   T  T      RY S      +  IF  + + G + + N+FN ++ 
Sbjct: 161 IFNRMKRLHLKPNLLTCNTLINALVRYPSKPSVYLSKAIFSDVIKLGVKVNTNTFNILIY 220

Query: 182 LLCKEKKVEKAYNLFKVFRGKFK-----ADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
             C E K+ +A  L     GK K      D +SYN I +  C   + N+A ++L +M + 
Sbjct: 221 GCCIENKLSEAIGLI----GKMKDFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNN 276

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           GL PN  T+NI++ GY + G ++EA +    M +     DV TY  ++ G    G+I  A
Sbjct: 277 GLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEA 336

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
             + D M N  +LP V TYN +I       S      + ++M GKG  PN+ TYNVV++ 
Sbjct: 337 FRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPNAVTYNVVVKW 396

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
               G+M+ A   + +M++    P+  T+N LI  +C AG +     + ++M       N
Sbjct: 397 YVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMN 456

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
             T N ++ ++   +K DD   A KLL     RG+   + ++  ++ G    G
Sbjct: 457 SVTLNTILHTLCGERKLDD---AYKLLSSASKRGYFVDEVSYGTLIMGYFKDG 506



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 164/368 (44%), Gaps = 61/368 (16%)

Query: 126 VHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185
           + +M+     P   TF  +   Y  AG+   A ++   M   G + +  + NTIL  LC 
Sbjct: 410 LRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCG 469

Query: 186 EKKVEKAYNLFK----------------VFRGKFK--------------------ADVIS 209
           E+K++ AY L                  +  G FK                      +I+
Sbjct: 470 ERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIIT 529

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           YN +  G C   +T+++++ L E+++ GL P+ TTYN ++ GY R GQ+E+A++F  +M 
Sbjct: 530 YNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMV 589

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
           K+  + D+ T   ++ G    G + +A  +F+  ++ G      TYN +I  LCK+D  E
Sbjct: 590 KKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDRFE 649

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV------GRMKDDEC----- 378
            A  +  EM  K   P+  TYN ++  L   G M+ A EF+      G+++D        
Sbjct: 650 EAFDLLAEMEEKKLGPDCYTYNAILSALADAGRMKEAEEFMSRIVEQGKLQDQTISLNKR 709

Query: 379 ------------EPNVQTYNILIRYFCDAGEIERGLELF-EKMGSGVCLPNLDTYNILIS 425
                       +PN  T++  I   C  G+ +  + +  E    G+ L +  TY  L+ 
Sbjct: 710 KIESSSETSQESDPNSVTFSEQINELCTQGKYKDAMHMVQESTQKGITL-HKSTYISLME 768

Query: 426 SMFVRKKS 433
            +  R+KS
Sbjct: 769 GLIKRRKS 776



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 154/322 (47%), Gaps = 7/322 (2%)

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY---NLFK-VFRGKF 203
           YV+  +   A +IF  M     + +L + NT+++ L +       Y    +F  V +   
Sbjct: 149 YVACNRPHHAAQIFNRMKRLHLKPNLLTCNTLINALVRYPSKPSVYLSKAIFSDVIKLGV 208

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
           K +  ++N++  G C+  + ++A+ ++ +M D    P+  +YN +L    + G++ EA  
Sbjct: 209 KVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEARD 268

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
             L+MK      +  T+  +V G+  +G +K A  V D M    VLP V TYN +I  LC
Sbjct: 269 LLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLC 328

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
           K   ++ A  + +EM     +P+  TYN +I G        +  E + +M+    +PN  
Sbjct: 329 KDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPNAV 388

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
           TYN++++++   G+++       KM      P+  T+N LI+      K+  L  A +++
Sbjct: 389 TYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYC---KAGRLSEAFRMM 445

Query: 444 IEMVDRGFMPRKFTFNRVLNGL 465
            EM  +G      T N +L+ L
Sbjct: 446 DEMSRKGLKMNSVTLNTILHTL 467


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 174/348 (50%), Gaps = 4/348 (1%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177
           + + V  L+  M+   L P   T+  I      +GK D A ++   M   G       + 
Sbjct: 25  ELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYT 84

Query: 178 TILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
           T++D  CK   ++ AY LF ++ + +   D I+Y  +  G C   +  +A +V  +M  R
Sbjct: 85  TLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSR 144

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           G+ P+  TY  ++ GY ++G++E+A+    +M +     +VVTYT +  G   +G++  A
Sbjct: 145 GVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTA 204

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
             +   M   G+  ++ TYN+++  LCK  ++  A+ + EEM   G  P++ T+  ++  
Sbjct: 205 NELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDA 264

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
            C TGEM +A E +  M D   +P V T+N+L+  FC +G +E G  L   M     +PN
Sbjct: 265 YCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPN 324

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
             TYN L+    +R   +++    ++   M  RG MP   T+N ++ G
Sbjct: 325 TTTYNSLMKQYCIR---NNMRCTTEIYKGMCARGVMPDSNTYNILIKG 369



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 102/361 (28%), Positives = 182/361 (50%), Gaps = 4/361 (1%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           MK     P   +++ +   Y   G+  + +K+   M   G + +L ++N+I+ LLCK  K
Sbjct: 1   MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK 60

Query: 189 VEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           V+ A  + + +       D + Y  + +G+C +     A ++  EM  + + P+   Y  
Sbjct: 61  VDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTA 120

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           V+ G  R G++ EA + F +M  R  E D VTYTT++ G+   GE+++A ++ + MV  G
Sbjct: 121 VICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSG 180

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           + P+V TY A+   LCK   V+ A  +  EM GKG   N  TYN ++ GLC +G + +A+
Sbjct: 181 LTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAV 240

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           + +  M+     P+  T+  L+  +C  GE+ +  EL  +M      P + T+N+L++  
Sbjct: 241 KLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGF 300

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
            +    +D     +LL  M+++G MP   T+N ++    +  N     EI +     G +
Sbjct: 301 CMSGMLED---GERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVM 357

Query: 488 P 488
           P
Sbjct: 358 P 358



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 150/302 (49%), Gaps = 1/302 (0%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID   +L + +  + L   M+   + P    +  +       GK   A K+F  M   G 
Sbjct: 87  IDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGV 146

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
                ++ T++D  CK  ++EKA++L  ++ +     +V++Y  +A+G C + + + A E
Sbjct: 147 EPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANE 206

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           +L EM  +GL  N+ TYN ++ G  ++G I +A +   EM+      D +T+TT++  + 
Sbjct: 207 LLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYC 266

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             GE+ +A  +   M++ G+ P+V T+N ++   C    +E+   +   M+ KG MPN+T
Sbjct: 267 KTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTT 326

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           TYN +++  C    M    E    M      P+  TYNILI+  C A  ++    L ++M
Sbjct: 327 TYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEM 386

Query: 409 GS 410
             
Sbjct: 387 AE 388



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 152/304 (50%), Gaps = 1/304 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   ID   +  +    ++L ++M    L P   T+  +A+     G+ D A ++   M
Sbjct: 152 TYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEM 211

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRT 223
              G + ++ ++N++++ LCK   + +A  L +         D I++  + + +C     
Sbjct: 212 CGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEM 271

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            KA E+L+EM+DRGL P + T+N+++ G+  +G +E+  R    M ++    +  TY ++
Sbjct: 272 VKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSL 331

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +  + +   ++    ++ GM   GV+P   TYN +I+  CK  +++ A  + +EM  KG+
Sbjct: 332 MKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGF 391

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
              +++YN +I+G     ++  A E    M+ +    + + YN+ +      G +E  LE
Sbjct: 392 NLTASSYNSIIKGFFKKKKISEARELFEEMRREGMAADAEIYNLFVDISYGEGNMETALE 451

Query: 404 LFEK 407
           L ++
Sbjct: 452 LCDE 455



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 111/236 (47%), Gaps = 1/236 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ++   +  + R    L+  M+   + P   TF  + + Y   G+  +A ++   M
Sbjct: 222 TYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREM 281

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRT 223
            + G + ++ +FN +++  C    +E    L   +       +  +YN +   +C+    
Sbjct: 282 LDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNM 341

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
               E+ K M  RG+ P+  TYNI++KG+ +A  ++EAW    EM ++   +   +Y +I
Sbjct: 342 RCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYNSI 401

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           + GF    +I  AR +F+ M   G+      YN  + +   + ++E A+ + +E +
Sbjct: 402 IKGFFKKKKISEARELFEEMRREGMAADAEIYNLFVDISYGEGNMETALELCDEAI 457


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 103/356 (28%), Positives = 178/356 (50%), Gaps = 6/356 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG-CRQSLNSFNTILDLLCKEKKVEKAYN 194
           P   T+  +   + S G+   A+ I   M E G    +  ++ T++   CK  +V++A  
Sbjct: 70  PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVK 129

Query: 195 LFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
           +F   + +G+ K + + YN +  G+C   + + AL     MV+RG+   + TYN+++   
Sbjct: 130 VFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHAL 189

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
           F  G+  EA+    EM  +    DV TY  +++G    G +K+A  +F+ M   GV  +V
Sbjct: 190 FMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATV 249

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            TY ++I  L KK  V+    +F+E V +G  P+   YN +I     +G ++RA E +G 
Sbjct: 250 VTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGE 309

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           M+     P+  TYN L+R  C  G ++   +L ++M      P+L TYN LIS   ++  
Sbjct: 310 MEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGD 369

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             D L   ++  EM+++GF P   T+N ++ GL   G    A+ +++     G  P
Sbjct: 370 VKDAL---RIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITP 422



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 108/362 (29%), Positives = 178/362 (49%), Gaps = 12/362 (3%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           MKSLSL  +  +   +    +SA  +  A  +F  M          +FN +L  LC   K
Sbjct: 1   MKSLSLPISTASLHPL----LSALPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGK 56

Query: 189 VEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR-GLNPNLTTYNI 247
             +A  L    R   + + ++YN +  G+C   R   AL++++EM +R G+ PN  TY  
Sbjct: 57  PARALELL---RQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGT 113

Query: 248 VLKGYFRAGQIEEAWRFFLEM-KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
           V+ G+ + G+++EA + F EM  K + + + V Y  ++ G+   G++  A    D MV  
Sbjct: 114 VISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVER 173

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           GV  +VATYN ++  L        A  + EEM GKG  P+  TYN++I G C  G +++A
Sbjct: 174 GVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKA 233

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
           LE    M        V TY  LI      G+++   +LF++       P+L  YN LI+S
Sbjct: 234 LEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINS 293

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGR 486
                 S ++  A +++ EM  +   P   T+N ++ GL L+G    A++++   ++ G 
Sbjct: 294 ---HSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGI 350

Query: 487 LP 488
            P
Sbjct: 351 QP 352



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 139/248 (56%), Gaps = 3/248 (1%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
            + LV  M    L P   T+ I+   +   G   +A++IF +M   G R ++ ++ +++ 
Sbjct: 198 AYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIY 257

Query: 182 LLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
            L K+ +V++   LF +  R   + D++ YN + N        ++A E++ EM  + + P
Sbjct: 258 ALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAP 317

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           +  TYN +++G    G+++EA +   EM KR  + D+VTY T++ G+ + G++K A  + 
Sbjct: 318 DDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIR 377

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           + M+N G  P++ TYNA+IQ LCK    ++A  + +EMV  G  P+ +TY  +I GL  T
Sbjct: 378 NEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL--T 435

Query: 361 GEMERALE 368
            E ERA++
Sbjct: 436 TEDERAID 443



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 134/281 (47%), Gaps = 1/281 (0%)

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-D 206
           Y   GK D A+     M E G   ++ ++N ++  L  + +  +AY L +   GK  A D
Sbjct: 154 YCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPD 213

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           V +YN++ NG C      KALE+ + M  RG+   + TY  ++    + GQ++E  + F 
Sbjct: 214 VFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFD 273

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           E  +R    D+V Y  +++     G I RA  +   M    + P   TYN +++ LC   
Sbjct: 274 EAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLG 333

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            V+ A  + +EM  +G  P+  TYN +I G    G+++ AL     M +    P + TYN
Sbjct: 334 RVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYN 393

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
            LI+  C  G+ +    + ++M      P+  TY  LI  +
Sbjct: 394 ALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 434



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 9/180 (5%)

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           T+N M++ LC       A+ +  +M      PN+ TYN VI G C  G ++ AL+ +  M
Sbjct: 43  TFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMREM 98

Query: 374 KD-DECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISSMFVRK 431
           ++     PN  TY  +I  +C  G ++  +++F++M   G   P    YN LI     + 
Sbjct: 99  RERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQG 158

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           K D  L+       MV+RG      T+N +++ L + G    A E++      G  P  F
Sbjct: 159 KLDTALLYRD---RMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVF 215


>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 172/341 (50%), Gaps = 4/341 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M +  L      +  +     + G+   A+++   M  HG       F T++   C
Sbjct: 309 LLDEMAAKGLESNATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFC 368

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            +  +  A  LF+  + +   AD +++  + NG C      +A  VL+EMVD+GL+ ++ 
Sbjct: 369 SKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVV 428

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY +++ GY + G + EA+R   EM  R+   +VVTYT +  G    G+++ A  +   M
Sbjct: 429 TYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEM 488

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            N G+  +V TYN++I  LCK  ++E A+ +  EM   G+  +  TY  +I  LC +GE 
Sbjct: 489 CNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEF 548

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           +RA   +  M D   +P++ TYN+L+  FC +G +E G +L E M      PN+ TYN L
Sbjct: 549 DRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSL 608

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           +    + K   ++    ++   M  +   P + T+N ++ G
Sbjct: 609 MKQYCIDK---NMKSTTEIYKGMHSQEVAPNENTYNILIKG 646



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 106/389 (27%), Positives = 175/389 (44%), Gaps = 48/389 (12%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+ R++   L P+ ++   +  R       D A+ +F  + +    +++ S N +L  L 
Sbjct: 215 LLRRLRQYGLSPSPESCNAVLSRL----PLDEAIALFRELPD----KNVCSHNILLKALL 266

Query: 185 KEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
              +++ A   F         DV++Y  + +G+C+      A+++L EM  +GL  N T 
Sbjct: 267 SAGRLKDACQHFDEMSSP--PDVVTYGTMVHGYCVRGELENAVKLLDEMAAKGLESNATV 324

Query: 245 YN-----------------------------------IVLKGYFRAGQIEEAWRFFLEMK 269
           Y                                     V+ G+   G +  A R F EM+
Sbjct: 325 YTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQ 384

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
           KR    D VT+T +++G    GE+K A  V   MV+ G+   V TY  +I   CK+ ++ 
Sbjct: 385 KRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMV 444

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
            A  V  EMVG+   PN  TY  +  GLC  G++  A E +  M +   E NV TYN LI
Sbjct: 445 EAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLI 504

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
              C  G +E+ + +  +M +     ++ TY  LI ++    KS +   A  +L EM+D+
Sbjct: 505 NGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLC---KSGEFDRAHNMLQEMLDK 561

Query: 450 GFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           G  P   T+N ++NG  + G     K++L
Sbjct: 562 GIKPSIATYNVLMNGFCMSGRVEGGKKLL 590



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 99/392 (25%), Positives = 159/392 (40%), Gaps = 46/392 (11%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           S F    DLAA  R       L   M+   L   + T   +      AG+   A ++   
Sbjct: 365 SGFCSKGDLAAARR-------LFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQE 417

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKR 222
           M + G    + ++  ++D  CK   + +A+ +     G+  A +V++Y  +++G C    
Sbjct: 418 MVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGD 477

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
              A E+L EM ++GL  N+ TYN ++ G  + G +E+A R   EM+      DV TYTT
Sbjct: 478 VRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTT 537

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++      GE  RA N+   M++ G+ PS+ATYN ++   C    VE    + E M+ K 
Sbjct: 538 LIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKN 597

Query: 343 Y-----------------------------------MPNSTTYNVVIRGLCHTGEMERAL 367
                                                PN  TYN++I+G C    M+ AL
Sbjct: 598 VRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNMKEAL 657

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
            F   M +        +Y+ LIR      +       F+KM +       D Y+  +   
Sbjct: 658 YFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEARVFFDKMRNEGLTAEPDVYSFYMDIS 717

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
           F     D+L     L  E+V+   +  K   N
Sbjct: 718 F---NEDNLESTITLCDELVEASHVKSKAGTN 746


>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
 gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
          Length = 716

 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 110/376 (29%), Positives = 184/376 (48%), Gaps = 5/376 (1%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           S  +++  I+  AR  +      LV RM+ +S   +  TF  +   Y + G  ++A  + 
Sbjct: 267 SDVTYNVVINGLARKGELEKAAQLVDRMR-MSKKASAFTFNPLITGYFARGSVEKAGALQ 325

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLV 220
           L M   G   ++ ++NTI+  + +   VE A   F   R      D+I+YN + NG+C  
Sbjct: 326 LEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKA 385

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
               +AL +  ++   GL P++ TYNI+L GY R G +EEA RF  EM ++ C+ DV TY
Sbjct: 386 GNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTY 445

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
           T +++G   V  +   R  FD M++ G+ P    YN  I       S   A  + E M+ 
Sbjct: 446 TILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMIS 505

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           +G   ++ TYN+ + GLC +G ++ A     +M  D  +P+  TY  LI   C+ G +  
Sbjct: 506 RGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLRE 565

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
             ++F+ M      P+  TY + I +   R    +L  A     +M++ G  P + T+N 
Sbjct: 566 ARDIFDGMLVSGLPPSAVTYTVFIHAYCRR---GNLYSAYGWFQKMLEEGVRPNEVTYNV 622

Query: 461 VLNGLLLIGNQGLAKE 476
           +++ L  +G   LA +
Sbjct: 623 LIHALCRMGRTNLAYQ 638



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 153/304 (50%), Gaps = 2/304 (0%)

Query: 121 TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180
            +W L   +K   L P+  T+ I+ + Y   G  + A +    M E GC+  ++++  ++
Sbjct: 391 ALW-LFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILM 449

Query: 181 DLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
           +   K + +      F     K  + D  +YN   +   ++  T++A ++ + M+ RG++
Sbjct: 450 NGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGIS 509

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
            +  TYNI L G  ++G +++A+  +++M     + D +TYT ++H     G ++ AR++
Sbjct: 510 SDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDI 569

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
           FDGM+  G+ PS  TY   I   C++ ++ +A   F++M+ +G  PN  TYNV+I  LC 
Sbjct: 570 FDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCR 629

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419
            G    A +    M +    PN  TY +LI   C  G  E  + L+ +M      P+  T
Sbjct: 630 MGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHPDHCT 689

Query: 420 YNIL 423
           +N L
Sbjct: 690 HNAL 693



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 173/367 (47%), Gaps = 8/367 (2%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH--GCRQ 171
           AR  D R+V+     M  L + P+  T+  + + +   G+ D+A K+   M     GC  
Sbjct: 210 ARWDDMRSVYA---EMLQLGIEPSIVTYNTLLDSFFREGRVDQAAKLLREMEARPGGCLP 266

Query: 172 SLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLK 231
           S  ++N +++ L ++ ++EKA  L    R   KA   ++N +  G+       KA  +  
Sbjct: 267 SDVTYNVVINGLARKGELEKAAQLVDRMRMSKKASAFTFNPLITGYFARGSVEKAGALQL 326

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
           EM + G+ P + TYN ++ G FR+G +E A   F+EM+      D++TY ++++G+   G
Sbjct: 327 EMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAG 386

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
            +K A  +F  +   G+ PSV TYN ++   C+   +E A    +EMV +G  P+ +TY 
Sbjct: 387 NLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYT 446

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
           +++ G      +    EF   M     +P+   YN  I      G      +L E M S 
Sbjct: 447 ILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISR 506

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
               +  TYNI +  +    KS +L  A  L ++MV  G  P   T+  +++     G  
Sbjct: 507 GISSDTVTYNIFLDGLC---KSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRL 563

Query: 472 GLAKEIL 478
             A++I 
Sbjct: 564 REARDIF 570



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 154/352 (43%), Gaps = 8/352 (2%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M+++ L P   T+  +   Y  AG    A+ +F  +   G   S+ ++N +LD  C+   
Sbjct: 363 MRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGD 422

Query: 189 VEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           +E+A    + +     + DV +Y ++ NG   V+      E   EM+ +GL P+   YN 
Sbjct: 423 LEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNT 482

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
            +      G   EA++    M  R    D VTY   + G    G +K A  ++  MV+ G
Sbjct: 483 RISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDG 542

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           + P   TY  +I   C++  +  A  +F+ M+  G  P++ TY V I   C  G +  A 
Sbjct: 543 LQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAY 602

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
            +  +M ++   PN  TYN+LI   C  G      + F +M      PN  TY +LI   
Sbjct: 603 GWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDG- 661

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
               K  +   A +L  EM   G  P   T N +  G     ++G +K  ++
Sbjct: 662 --NCKEGNWEEAIRLYSEMHQHGIHPDHCTHNALFKGF----DEGQSKHAIQ 707



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 127/289 (43%), Gaps = 41/289 (14%)

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
           L   +EM   G+ P +   N+VL+      + ++    + EM +   E  +VTY T++  
Sbjct: 181 LAAFREMAHHGVPPFIKECNLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDS 240

Query: 287 FGVVGEIKRARNVFDGMVN--GGVLPSVATYNAMIQVLCKKDSVENAILVFE-------- 336
           F   G + +A  +   M    GG LPS  TYN +I  L +K  +E A  + +        
Sbjct: 241 FFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRMRMSKKA 300

Query: 337 --------------------------EMVGKGYMPNSTTYNVVIRGLCHTGEMERA-LEF 369
                                     EM  +G +P   TYN +I G+  +G +E A ++F
Sbjct: 301 SAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKF 360

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
           V  M+     P++ TYN LI  +C AG ++  L LF  +      P++ TYNIL+     
Sbjct: 361 V-EMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYC- 418

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
             +  DL  A +   EMV++G  P   T+  ++NG   + N  + +E  
Sbjct: 419 --RLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFF 465


>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 575

 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 113/391 (28%), Positives = 186/391 (47%), Gaps = 5/391 (1%)

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQ-KTFAIIAERYVSAGKADRA 157
           Y+H+ S     I    +   + T  +L+H +       T+ + + +I   YV +   D +
Sbjct: 55  YSHAQSLLLQVISGKIQ-SQFFTSSSLLHYLTESETSKTKSRLYEVIINAYVQSQSLDSS 113

Query: 158 VKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGW 217
           +  F  M + G     N FN +L  +       + +  F   + K   DV S+ ++  G 
Sbjct: 114 IYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNESKIKVVLDVYSFGIVIKGC 173

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           C      K+ ++L E+ + G +PN+  Y  ++ G  + G+IE+A   F EM K     + 
Sbjct: 174 CEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANE 233

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
            TYT ++HG    G  K+   +++ M   GV P++ TYN ++  LCK    ++A  VF+E
Sbjct: 234 WTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDE 293

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M  +G   N  TYN +I GLC   +   A + + +MK     PN+ TYN LI  FC  G+
Sbjct: 294 MRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGK 353

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           + + L L   + S    P+L TYN+L+S  F RK   D   A K++ EM +RG  P K T
Sbjct: 354 LGKALSLCRDLKSRGLSPSLVTYNVLVSG-FCRK--GDTSGAAKMVKEMEERGIKPSKVT 410

Query: 458 FNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           +  +++      N   A ++       G +P
Sbjct: 411 YTILIDTFARSDNMETAIQLRSSMEELGLVP 441



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 159/313 (50%), Gaps = 6/313 (1%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           + +  +M+   + P   T+  +  +    G+   A K+F  M E G   ++ ++NT++  
Sbjct: 253 FEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGG 312

Query: 183 LCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           LC+E K  +A  +    +      ++I+YN + +G+C V +  KAL + +++  RGL+P+
Sbjct: 313 LCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPS 372

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           L TYN+++ G+ R G    A +   EM++R  +   VTYT ++  F     ++ A  +  
Sbjct: 373 LVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRS 432

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M   G++P V TY+ +I   C K  +  A  +F+ MV K   PN   YN +I G C  G
Sbjct: 433 SMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEG 492

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
              RAL     M++ E  PNV +Y+ LIR  C   +++   +L EKM      P+ DT  
Sbjct: 493 SSYRALRLFRDMEEKELAPNVASYSYLIRVLCKERKLKEAEDLVEKMIDSGIDPS-DTIC 551

Query: 422 ILISSMFVRKKSD 434
            LIS    R K+D
Sbjct: 552 NLIS----RAKTD 560



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 177/342 (51%), Gaps = 6/342 (1%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           +F I+ +    AG+ +++  + + + E G   ++  + T++D  CK+ ++EKA +LF   
Sbjct: 165 SFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLF-FE 223

Query: 200 RGKFK--ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
            GKF   A+  +Y V+ +G        +  E+ ++M + G+ PNL TYN V+    + G+
Sbjct: 224 MGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGR 283

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
            ++A++ F EM++R    ++VTY T++ G     +   A  V D M +  + P++ TYN 
Sbjct: 284 TKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNT 343

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           +I   C    +  A+ +  ++  +G  P+  TYNV++ G C  G+   A + V  M++  
Sbjct: 344 LIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERG 403

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
            +P+  TY ILI  F  +  +E  ++L   M     +P++ TY++LI    ++ + ++  
Sbjct: 404 IKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNE-- 461

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
            A +L   MV++   P +  +N ++ G    G+   A  + R
Sbjct: 462 -ASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFR 502



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 133/244 (54%), Gaps = 1/244 (0%)

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYN 211
           KA+ A K+   M  +    +L ++NT++D  C   K+ KA +L +  + +     +++YN
Sbjct: 318 KANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYN 377

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
           V+ +G+C    T+ A +++KEM +RG+ P+  TY I++  + R+  +E A +    M++ 
Sbjct: 378 VLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEEL 437

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
               DV TY+ ++HGF + G++  A  +F  MV   + P+   YN MI   CK+ S   A
Sbjct: 438 GLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRA 497

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
           + +F +M  K   PN  +Y+ +IR LC   +++ A + V +M D   +P+    N++ R 
Sbjct: 498 LRLFRDMEEKELAPNVASYSYLIRVLCKERKLKEAEDLVEKMIDSGIDPSDTICNLISRA 557

Query: 392 FCDA 395
             D+
Sbjct: 558 KTDS 561



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 3/160 (1%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID  AR  +  T   L   M+ L L P   T++++   +   G+ + A ++F SM E   
Sbjct: 415 IDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKML 474

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALE 228
             +   +NT++   CKE    +A  LF+    K    +V SY+ +    C  ++  +A +
Sbjct: 475 EPNEVIYNTMILGYCKEGSSYRALRLFRDMEEKELAPNVASYSYLIRVLCKERKLKEAED 534

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRA--GQIEEAWRFFL 266
           ++++M+D G++P+ T  N++ +    +   QI +A  F L
Sbjct: 535 LVEKMIDSGIDPSDTICNLISRAKTDSPVAQIIDASSFNL 574


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 170/331 (51%), Gaps = 4/331 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN- 194
           P    F+ +    V  G  +  V +   +   G  Q ++S + +++  C   +V+   + 
Sbjct: 60  PCIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSILINCFCHLHRVDFGLSV 119

Query: 195 LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           L K+ +   +  ++++  + NG C+  + ++ + +  +M+ RGL PN+ TYN+++    +
Sbjct: 120 LSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSK 179

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
           +G+  EA  F  +M+K  C  +VV Y+T++ G+ + G++  AR+VFD MV+ G  P+V T
Sbjct: 180 SGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYT 239

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y +++   CK + +E A+ + +E + KG +P+  T+  +I GLC  G    A +    + 
Sbjct: 240 YTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYIC 299

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
                PN+ TY +L+   C  G +E    LF++M      PNL  Y ILI S+    K  
Sbjct: 300 AHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIK 359

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           D     +L   ++D G  P  +T+  ++  L
Sbjct: 360 D---GKELFSRLIDEGLKPNVYTYTALVGAL 387



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 185/368 (50%), Gaps = 6/368 (1%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            R+  Y TV  L   ++ L +     + +I+   +    + D  + +   + + G   S+
Sbjct: 73  VRMGHYETVVYLSKEIEFLGIEQDIHSLSILINCFCHLHRVDFGLSVLSKILKLGLEPSI 132

Query: 174 NSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLK 231
            +F T+L+ LC E K+++   L+   + RG  + +V +YNVI N      + N+AL  LK
Sbjct: 133 VTFTTLLNGLCMEGKMDQVMMLYDDMLVRG-LQPNVYTYNVIINSLSKSGKANEALGFLK 191

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
           +M   G  PN+  Y+ ++ GY   GQ++EA   F  M  + C  +V TYT++++G+  + 
Sbjct: 192 QMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIE 251

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
            I+ A  + D  +  G++P + T+  +I  LC+      A  +F  +   G+ PN  TY 
Sbjct: 252 RIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYG 311

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
           V++ GLC  G +E A      M+    +PN+  Y ILI   C  G+I+ G ELF ++   
Sbjct: 312 VLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDE 371

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
              PN+ TY  L+ ++    K   ++ A KL  +M + G  P K  +N ++ G L   + 
Sbjct: 372 GLKPNVYTYTALVGALC---KEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDP 428

Query: 472 GLAKEILR 479
            +A++++ 
Sbjct: 429 SMARQLVE 436



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 168/329 (51%), Gaps = 4/329 (1%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           +++ ++  L L P+  TF  +       GK D+ + ++  M   G + ++ ++N I++ L
Sbjct: 118 SVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSL 177

Query: 184 CKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
            K  K  +A    K   +     +V++Y+ + +G+CL  + ++A  V   MV +G  PN+
Sbjct: 178 SKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNV 237

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TY  ++ GY +  +IEEA +   E  ++    D+VT+TTI+ G    G    A+ +F  
Sbjct: 238 YTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRY 297

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           +   G  P++ TY  ++  LCK  ++E A  +F+EM      PN   Y ++I  LC  G+
Sbjct: 298 ICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGK 357

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           ++   E   R+ D+  +PNV TY  L+   C  G I    +LF KM    C P+   YN+
Sbjct: 358 IKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNV 417

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
           +I      K   D  +A +L+ EMV+RGF
Sbjct: 418 IIQGFLQHK---DPSMARQLVEEMVNRGF 443



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 146/288 (50%), Gaps = 1/288 (0%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
           V  L   M    L P   T+ +I      +GKA+ A+     M + GC  ++ +++T++D
Sbjct: 151 VMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLID 210

Query: 182 LLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
             C   ++++A ++F +   K    +V +Y  + NG+C ++R  +A+++L E + +GL P
Sbjct: 211 GYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVP 270

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           ++ T+  ++ G  RAG+   A + F  +       +++TY  ++ G    G ++ A  +F
Sbjct: 271 DIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALF 330

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
             M    V P++  Y  +I  LCK   +++   +F  ++ +G  PN  TY  ++  LC  
Sbjct: 331 QEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKE 390

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           G +  A +   +M++D C P+   YN++I+ F    +     +L E+M
Sbjct: 391 GLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMARQLVEEM 438



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 134/268 (50%), Gaps = 3/268 (1%)

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
           K  + AL   + M+ R   P +  ++ +     R G  E       E++    E D+ + 
Sbjct: 41  KDKDDALASFRLMLLRKPLPCIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSL 100

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
           + +++ F  +  +    +V   ++  G+ PS+ T+  ++  LC +  ++  ++++++M+ 
Sbjct: 101 SILINCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLV 160

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           +G  PN  TYNV+I  L  +G+   AL F+ +M+   C PNV  Y+ LI  +C  G+++ 
Sbjct: 161 RGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDE 220

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
              +F+ M S  C PN+ TY  L++     ++ ++   A +LL E + +G +P   TF  
Sbjct: 221 ARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEE---AVQLLDETLRKGLVPDIVTFTT 277

Query: 461 VLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           +++GL   G    A+++ R     G  P
Sbjct: 278 IISGLCRAGRPLAAQQLFRYICAHGHTP 305



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 104/239 (43%), Gaps = 4/239 (1%)

Query: 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ 171
           L  ++ + R+V+ L   M S    P   T+  +   Y    + + AV++       G   
Sbjct: 214 LRGQMDEARSVFDL---MVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVP 270

Query: 172 SLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVL 230
            + +F TI+  LC+  +   A  LF+ +       ++++Y V+ +G C      +A  + 
Sbjct: 271 DIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALF 330

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
           +EM    + PNL  Y I++    + G+I++    F  +     + +V TYT +V      
Sbjct: 331 QEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKE 390

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
           G I  A  +F  M   G  P    YN +IQ   +      A  + EEMV +G+  ++ T
Sbjct: 391 GLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMARQLVEEMVNRGFSADAAT 449


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 184/342 (53%), Gaps = 10/342 (2%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKV 198
           ++ ++   Y  +G+ + A+++   M   G   +  +++ +L  LC   K+++A   L + 
Sbjct: 151 SYNVLISGYCKSGEIEEALRVLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQ 207

Query: 199 FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
            + K   DV++  V+ +  C      +A+++  EM ++G  P++ TYN+++KG+ + G++
Sbjct: 208 LQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRL 267

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           +EA RF  ++    C+ DV+++  I+      G    A  +   M+  G LPSV T+N +
Sbjct: 268 DEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNIL 327

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           I  LC+K  +  A+ V E M   G+ PNS ++N +I+G C+   ++RA+E++  M    C
Sbjct: 328 INFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGC 387

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
            P++ TYNIL+   C  G+++  + +  ++ S  C P+L +YN +I  +    K++   +
Sbjct: 388 YPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAE---L 444

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           A +LL EM  +G  P   T   V+ GL     +G  +E ++ 
Sbjct: 445 AVELLEEMCYKGLKPDLITCTSVVGGL---SREGKVREAMKF 483



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 165/365 (45%), Gaps = 71/365 (19%)

Query: 183 LCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           L +  ++E+     +    K K+ DVI+   +   +C + RT  A +++  + + G   +
Sbjct: 89  LIRNGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVID 148

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMK-------------------------------- 269
           +T+YN+++ GY ++G+IEEA R    M                                 
Sbjct: 149 VTSYNVLISGYCKSGEIEEALRVLDRMGVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQL 208

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
           + KC  DVVT T ++        + +A  +F+ M N G  P V TYN +I+  CK   ++
Sbjct: 209 QSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLD 268

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
            AI   +++   G  P+  ++N+++R LC  G    A++ +  M    C P+V T+NILI
Sbjct: 269 EAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILI 328

Query: 390 RYFCDAGEIERGLELFEKM---------------------GSGV--------------CL 414
            + C  G + + L + E M                     G G+              C 
Sbjct: 329 NFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCY 388

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           P++ TYNIL++++    K DD +V   +L ++  +G  P   ++N V++GLL +G   LA
Sbjct: 389 PDIVTYNILLTALCKDGKVDDAVV---ILSQLSSKGCSPSLISYNTVIDGLLKVGKAELA 445

Query: 475 KEILR 479
            E+L 
Sbjct: 446 VELLE 450



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 154/348 (44%), Gaps = 4/348 (1%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID   +         L + M++    P   T+ ++ + +   G+ D A++    +  +GC
Sbjct: 223 IDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGC 282

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALE 228
           +  + S N IL  LC   +   A  L   + R      V+++N++ N  C      KAL 
Sbjct: 283 QPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALN 342

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           VL+ M   G  PN  ++N +++G+     I+ A  +   M  R C  D+VTY  ++    
Sbjct: 343 VLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALC 402

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G++  A  +   + + G  PS+ +YN +I  L K    E A+ + EEM  KG  P+  
Sbjct: 403 KDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLI 462

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           T   V+ GL   G++  A++F   +K     PN   YN +I   C + +    ++    M
Sbjct: 463 TCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAIDFLADM 522

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
            +  C P   TY  LI  +     ++D   A KL  E+  RG + R  
Sbjct: 523 VAKGCKPTEATYTTLIKGITYEGLAED---ASKLSNELYSRGLVKRSL 567



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 167/349 (47%), Gaps = 7/349 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T  ++ +         +A+K+F  M   GC+  + ++N ++   CK  ++++A   
Sbjct: 214 PDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRF 273

Query: 196 FKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            K       + DVIS+N+I    C   R   A+++L  M+ +G  P++ T+NI++    +
Sbjct: 274 LKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQ 333

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G + +A      M K     +  ++  ++ GF     I RA    + MV+ G  P + T
Sbjct: 334 KGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVT 393

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN ++  LCK   V++A+++  ++  KG  P+  +YN VI GL   G+ E A+E +  M 
Sbjct: 394 YNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMC 453

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
               +P++ T   ++      G++   ++ F  +      PN   YN +I+ +    KS 
Sbjct: 454 YKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLC---KSQ 510

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
              +A   L +MV +G  P + T+  ++ G   I  +GLA++  +L + 
Sbjct: 511 QTSLAIDFLADMVAKGCKPTEATYTTLIKG---ITYEGLAEDASKLSNE 556



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 129/275 (46%), Gaps = 41/275 (14%)

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           L+   R G++EE  RF   M  +    DV+  T ++  F  +G  K A  +   +   G 
Sbjct: 86  LRRLIRNGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGA 145

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
           +  V +YN +I   CK   +E A+ V + M   G  PN+ TY+ V+  LC  G++++A++
Sbjct: 146 VIDVTSYNVLISGYCKSGEIEEALRVLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQ 202

Query: 369 FVGR-----------------------------------MKDDECEPNVQTYNILIRYFC 393
            +GR                                   M++  C+P+V TYN+LI+ FC
Sbjct: 203 VLGRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFC 262

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
             G ++  +   +K+ S  C P++ ++N+++ S+    +  D   A KLL  M+ +G +P
Sbjct: 263 KGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMD---AMKLLATMLRKGCLP 319

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
              TFN ++N L   G  G A  +L +  + G  P
Sbjct: 320 SVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTP 354



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 105/218 (48%), Gaps = 1/218 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P  ++F  + + + +    DRA++    M   GC   + ++N +L  LCK+ KV+ A  +
Sbjct: 354 PNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVI 413

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
                 K     +ISYN + +G   V +   A+E+L+EM  +GL P+L T   V+ G  R
Sbjct: 414 LSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSR 473

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G++ EA +FF  +K+     +   Y +I+ G     +   A +    MV  G  P+ AT
Sbjct: 474 EGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAIDFLADMVAKGCKPTEAT 533

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           Y  +I+ +  +   E+A  +  E+  +G +  S    V
Sbjct: 534 YTTLIKGITYEGLAEDASKLSNELYSRGLVKRSLVEKV 571


>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
 gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
          Length = 696

 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 117/407 (28%), Positives = 189/407 (46%), Gaps = 44/407 (10%)

Query: 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG--C 169
           L A  R    +  ++ RM  L   P   ++  + +   +  K + A ++   M E G  C
Sbjct: 189 LCAEKRTSDAMNIVLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDGDNC 248

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
             ++ S+ T++    KE  V KAY LF K+       +V++ N + +G C V+  +KA  
Sbjct: 249 PPNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEA 308

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT------- 281
           VL++M+D  + PN TTYN ++ GY  +GQ  EA R   EM +     +VVTY+       
Sbjct: 309 VLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLC 368

Query: 282 ----------------------------TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
                                       +++HG+   G +    NV D MV  G+ P   
Sbjct: 369 KSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGRH 428

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
            +N  I   CK   ++ A L F +M  +G+MP+   Y  VI GLC  G ++ A+    +M
Sbjct: 429 VFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQM 488

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
            DD   P++ T+N LI  F   G+ E+  ELF +M      PN++T+N +I  +F   K 
Sbjct: 489 IDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDRGIPPNVNTFNSMIDKLFKEGKV 548

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
            +   A KL   M   G  P   ++N +++G  + G  G   E+++L
Sbjct: 549 TE---ARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVG---EVMKL 589



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 163/345 (47%), Gaps = 13/345 (3%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADR---AVKIFLSMHEHGCRQ---SLNSFNT 178
           L+ R +  S+    +    +A   VS+   D    AV +F  M   G ++    + +F  
Sbjct: 90  LLQRARPGSIYALNQLLTTVARAPVSSSVRDGPALAVSMFNRMARAGAKKVAPDIATFGI 149

Query: 179 ILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNKALE-VLKEMVDR 236
           ++   C    +   +  L ++ +   +A  +++  +    C  KRT+ A+  VL+ M + 
Sbjct: 150 LISCCCDAGCLNLGFAALGQIIKTGLRAQAVTFTPLLRTLCAEKRTSDAMNIVLRRMPEL 209

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR--KCEIDVVTYTTIVHGFGVVGEIK 294
           G  P++ +Y  +LKG     + EEA      M +    C  +VV+YTT++HGF   G++ 
Sbjct: 210 GCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPNVVSYTTVIHGFFKEGDVG 269

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
           +A  +F  M++ G+ P+V T N++I  LCK  +++ A  V ++M+ +  MPN TTYN +I
Sbjct: 270 KAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLI 329

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
            G   +G+   A+  +  M  D   PNV TY++LI   C +G      E+F  M      
Sbjct: 330 HGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQK 389

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
           PN  TY  L+          D+     L   MV  G  P +  FN
Sbjct: 390 PNASTYGSLLHGYATEGNLVDMNNVKDL---MVQNGMRPGRHVFN 431



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/412 (22%), Positives = 179/412 (43%), Gaps = 55/412 (13%)

Query: 107 DHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE 166
           +  ID   +++       ++ +M    + P   T+  +   Y+S+G+   AV+I   M  
Sbjct: 291 NSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSR 350

Query: 167 HGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGW-------- 217
            G R ++ +++ ++D LCK     +A  +F  + +   K +  +Y  + +G+        
Sbjct: 351 DGQRPNVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNLVD 410

Query: 218 ---------------------------CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250
                                      C   R ++A     +M  +G  P++  Y  V+ 
Sbjct: 411 MNNVKDLMVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVID 470

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
           G  + G++++A   F +M       D++T+ T++HGF + G+ ++A  +F  M++ G+ P
Sbjct: 471 GLCKIGRLDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDRGIPP 530

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           +V T+N+MI  L K+  V  A  +F+ M   G  PN  +YN +I G    GE+   ++ +
Sbjct: 531 NVNTFNSMIDKLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLL 590

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
             M     +P   T+N L+      G +  GL+           P++ T   LI S    
Sbjct: 591 DDMLLIGLKPTAVTFNTLLD-----GMVSMGLK-----------PDVVTCKTLIDSCCED 634

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
            + +D+L    L  EM+ +       T N  L G+ +  +   +  ++ L++
Sbjct: 635 GRIEDILT---LFREMLGKADKTDTITENIKLRGVTVKASYHCSSVVISLKA 683


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 182/376 (48%), Gaps = 20/376 (5%)

Query: 104 SSFDHAIDL--AARLRDYRTVWTLVHRMKS-----------LSLGPTQKTFAIIAERYVS 150
              D A+ L  +AR  D  T   L+ ++ +            + GP    +  +   Y  
Sbjct: 79  GELDEALRLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNAMVAGYCG 138

Query: 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVIS 209
           AG+ D A ++   M          ++NT++  LC   +   A  +  ++ R +   DV++
Sbjct: 139 AGQLDAARRLVAEMPVE---PDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVT 195

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           Y ++    C      +A+++L EM D+G  P++ TYN+V+ G  + G++++A  F   + 
Sbjct: 196 YTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLP 255

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
              CE + V+Y  ++ G       + A  +   M   G  P+V T+N +I  LC+K  VE
Sbjct: 256 SYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVE 315

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
            A+ V E++   G  PNS +YN ++   C   +M++A+ F+  M    C P++ +YN L+
Sbjct: 316 PALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLL 375

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
              C +GE++  +EL  ++    C P L +YN +I  +    K+ + L   +LL EMV +
Sbjct: 376 TALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEAL---ELLNEMVSK 432

Query: 450 GFMPRKFTFNRVLNGL 465
           G  P   T++ +  GL
Sbjct: 433 GLQPDIITYSTIAAGL 448



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 165/332 (49%), Gaps = 6/332 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+  +       G+   A+ +   M    C   + ++  +L+  CK    ++A  L
Sbjct: 156 PDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKL 215

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
               R K    D+++YNV+ NG C   R + A+E LK +   G  PN  +YNIVLKG   
Sbjct: 216 LDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCT 275

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
           A + E+A     EM ++ C  +VVT+  ++      G ++ A  V + +   G  P+  +
Sbjct: 276 AERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLS 335

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN ++   CK+  ++ A+   + MV +G  P+  +YN ++  LC +GE++ A+E + ++K
Sbjct: 336 YNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLK 395

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
           D  C P + +YN +I     AG+ +  LEL  +M S    P++ TY+ + + +    + +
Sbjct: 396 DKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIE 455

Query: 435 DLLVA-GKLLIEMVDRGFMPRKFTFNRVLNGL 465
           D + A GK+     D G  P    +N ++ GL
Sbjct: 456 DAIRAFGKV----QDMGIRPNTVLYNAIILGL 483



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 176/343 (51%), Gaps = 10/343 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T A + ++  ++G+   A ++  +     C   + ++N ++   C   +++ A  L
Sbjct: 94  PDAGTCAALIKKLSASGRTAEARRVLAA-----CGPDVMAYNAMVAGYCGAGQLDAARRL 148

Query: 196 FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
             V     + D  +YN +  G C   RT  AL VL EM+ R   P++ TY I+L+   + 
Sbjct: 149 --VAEMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKR 206

Query: 256 GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
              ++A +   EM+ + C  D+VTY  +V+G    G +  A      + + G  P+  +Y
Sbjct: 207 SGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSY 266

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           N +++ LC  +  E+A  +  EM  KG  PN  T+N++I  LC  G +E ALE + ++  
Sbjct: 267 NIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPK 326

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
             C PN  +YN L+  FC   ++++ +   + M S  C P++ +YN L++++    +S +
Sbjct: 327 YGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALC---RSGE 383

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           + VA +LL ++ D+G  P   ++N V++GL   G    A E+L
Sbjct: 384 VDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELL 426



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 163/347 (46%), Gaps = 13/347 (3%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           Y+    L+  M+     P   T+ ++       G+ D A++   ++  +GC  +  S+N 
Sbjct: 209 YKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNI 268

Query: 179 ILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           +L  LC  ++ E A  L      K    +V+++N++ +  C       ALEVL+++   G
Sbjct: 269 VLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYG 328

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
             PN  +YN +L  + +  ++++A  F   M  R C  D+V+Y T++      GE+  A 
Sbjct: 329 CTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAV 388

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
            +   + + G  P + +YN +I  L K    + A+ +  EMV KG  P+  TY+ +  GL
Sbjct: 389 ELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGL 448

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
           C    +E A+   G+++D    PN   YN +I   C   E    ++LF  M    C+PN 
Sbjct: 449 CREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNE 508

Query: 418 DTYNILISSM----FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
            TY ILI  +     +++  D       LL E+  RG + RK   N+
Sbjct: 509 STYTILIEGLAYEGLIKEARD-------LLDELCSRGVV-RKSLINK 547



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 125/259 (48%), Gaps = 11/259 (4%)

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           +V     P+  T   ++K    +G+  EA R         C  DV+ Y  +V G+   G+
Sbjct: 87  LVGSARRPDAGTCAALIKKLSASGRTAEARRVLA-----ACGPDVMAYNAMVAGYCGAGQ 141

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           +  AR +   M    V P   TYN +I+ LC +    NA+ V +EM+ +  +P+  TY +
Sbjct: 142 LDAARRLVAEMP---VEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTI 198

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           ++   C     ++A++ +  M+D  C P++ TYN+++   C  G ++  +E  + + S  
Sbjct: 199 LLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYG 258

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
           C PN  +YNI++  +   ++ +D   A +L+ EM  +G  P   TFN +++ L   G   
Sbjct: 259 CEPNTVSYNIVLKGLCTAERWED---AEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVE 315

Query: 473 LAKEILRLQSRCGRLPRQF 491
            A E+L    + G  P   
Sbjct: 316 PALEVLEQIPKYGCTPNSL 334



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 110/221 (49%), Gaps = 1/221 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   ++  +   +    K D+A+     M   GC   + S+NT+L  LC+  +V+ A  L
Sbjct: 331 PNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVEL 390

Query: 196 FKVFRGKFKADV-ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
               + K  A V ISYN + +G     +T +ALE+L EMV +GL P++ TY+ +  G  R
Sbjct: 391 LHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCR 450

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
             +IE+A R F +++      + V Y  I+ G     E   A ++F  M+  G +P+ +T
Sbjct: 451 EDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNEST 510

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
           Y  +I+ L  +  ++ A  + +E+  +G +  S      IR
Sbjct: 511 YTILIEGLAYEGLIKEARDLLDELCSRGVVRKSLINKGAIR 551



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 100/223 (44%), Gaps = 3/223 (1%)

Query: 90  FNILSYHPTYAHSPSSFDHAIDLAA--RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
             +L   P Y  +P+S  +   L A  + +        +  M S    P   ++  +   
Sbjct: 318 LEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTA 377

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKAD 206
              +G+ D AV++   + + GC   L S+NT++D L K  K ++A  L      K  + D
Sbjct: 378 LCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPD 437

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           +I+Y+ IA G C   R   A+    ++ D G+ PN   YN ++ G  +  +   A   F 
Sbjct: 438 IITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFA 497

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
            M    C  +  TYT ++ G    G IK AR++ D + + GV+
Sbjct: 498 YMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVV 540


>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1163

 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 128/432 (29%), Positives = 205/432 (47%), Gaps = 55/432 (12%)

Query: 78  RLWNHALKALHFFNILSYHPT--YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLG 135
           RL     KAL FFN   + P   + H+  S+   +++  R R+       +  +K  S G
Sbjct: 94  RLIKTPSKALQFFN---WAPELGFTHNDQSYFLMLEILGRARNLNVARNFLFSIKRRSNG 150

Query: 136 PTQ---KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
             +   + F  +   Y  AG    +V++F SM   G   S+ +FN++L +L K       
Sbjct: 151 TVKLEDRFFNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLK------- 203

Query: 193 YNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR-GLNPNLTTYNIVLKG 251
                  RG                    RTN A  V  EM+   G+ P+  T+NI+++G
Sbjct: 204 -------RG--------------------RTNMAQSVFDEMLSTYGVTPDTYTFNILIRG 236

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV--NGGVL 309
           + +   ++E +RFF EM + KC+ D+VTY T+V G    G++  A NV +GMV  +  + 
Sbjct: 237 FCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVDGLCRAGKVNIAHNVVNGMVKKSTNLN 296

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE- 368
           P V TY  +++  C K  ++ A++VFEEMV KG  PN  TYN +I+GLC   ++++  + 
Sbjct: 297 PDVVTYTTLVRGYCMKHEIDEALVVFEEMVSKGLKPNEITYNTLIKGLCEVQKIDKIKQI 356

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
           F G +      P+  T N L+   C+AG +   LE+FEKM      P+  TY++LI ++ 
Sbjct: 357 FEGALGGGGFIPDTCTLNTLMNAHCNAGNLNDALEVFEKMMVLNVRPDSATYSVLIRNLC 416

Query: 429 VRKKSD------DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR-LQ 481
            R   +      D L   ++L+   D G  P    +  +   L   G    A+ + R L 
Sbjct: 417 QRGNFERAEQLFDELSEKEILLR--DDGCTPLVAAYKSMFEFLCRNGKTAKAERVFRQLM 474

Query: 482 SRCGRLPRQFKL 493
            R  + P  FK+
Sbjct: 475 KRGTQDPLSFKI 486



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 164/372 (44%), Gaps = 52/372 (13%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           + +  + P   TF I+   +      D   + F  M    C   L ++NT++D LC+  K
Sbjct: 218 LSTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVDGLCRAGK 277

Query: 189 VEKAYNLFKVFRGK---FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
           V  A+N+      K      DV++Y  +  G+C+    ++AL V +EMV +GL PN  TY
Sbjct: 278 VNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFEEMVSKGLKPNEITY 337

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV- 304
           N ++KG                     CE+                +I + + +F+G + 
Sbjct: 338 NTLIKGL--------------------CEVQ---------------KIDKIKQIFEGALG 362

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
            GG +P   T N ++   C   ++ +A+ VFE+M+     P+S TY+V+IR LC  G  E
Sbjct: 363 GGGFIPDTCTLNTLMNAHCNAGNLNDALEVFEKMMVLNVRPDSATYSVLIRNLCQRGNFE 422

Query: 365 RALEFVGR-------MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK-MGSGVCLPN 416
           RA +           ++DD C P V  Y  +  + C  G+  +   +F + M  G   P 
Sbjct: 423 RAEQLFDELSEKEILLRDDGCTPLVAAYKSMFEFLCRNGKTAKAERVFRQLMKRGTQDP- 481

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKE 476
             ++ ILI       +        +LL+ M+ R F+P   T+  +++GLL  G   +A +
Sbjct: 482 -LSFKILIKG---HCREGTFEAGYELLVLMLRRDFVPDLETYQSLIDGLLQKGEPLVAYQ 537

Query: 477 ILRLQSRCGRLP 488
            L    +   +P
Sbjct: 538 TLEKMIKSSHVP 549



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 135/303 (44%), Gaps = 31/303 (10%)

Query: 130 KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV 189
           KS +L P   T+  +   Y    + D A+ +F  M   G + +  ++NT++  LC+ +K+
Sbjct: 291 KSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFEEMVSKGLKPNEITYNTLIKGLCEVQKI 350

Query: 190 EKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           +K   +F+  +  G F  D  + N + N  C     N ALEV ++M+   + P+  TY++
Sbjct: 351 DKIKQIFEGALGGGGFIPDTCTLNTLMNAHCNAGNLNDALEVFEKMMVLNVRPDSATYSV 410

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           +++   + G  E A + F E+ +++  +                             + G
Sbjct: 411 LIRNLCQRGNFERAEQLFDELSEKEILLR----------------------------DDG 442

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
             P VA Y +M + LC+      A  VF +++ +G   +  ++ ++I+G C  G  E   
Sbjct: 443 CTPLVAAYKSMFEFLCRNGKTAKAERVFRQLMKRG-TQDPLSFKILIKGHCREGTFEAGY 501

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           E +  M   +  P+++TY  LI      GE     +  EKM     +P   T++ +++ +
Sbjct: 502 ELLVLMLRRDFVPDLETYQSLIDGLLQKGEPLVAYQTLEKMIKSSHVPETSTFHSILARL 561

Query: 428 FVR 430
             +
Sbjct: 562 LAK 564



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 10/179 (5%)

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH----- 167
           A  L D   V+    +M  L++ P   T++++       G  +RA ++F  + E      
Sbjct: 383 AGNLNDALEVF---EKMMVLNVRPDSATYSVLIRNLCQRGNFERAEQLFDELSEKEILLR 439

Query: 168 --GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNK 225
             GC   + ++ ++ + LC+  K  KA  +F+    +   D +S+ ++  G C       
Sbjct: 440 DDGCTPLVAAYKSMFEFLCRNGKTAKAERVFRQLMKRGTQDPLSFKILIKGHCREGTFEA 499

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
             E+L  M+ R   P+L TY  ++ G  + G+   A++   +M K     +  T+ +I+
Sbjct: 500 GYELLVLMLRRDFVPDLETYQSLIDGLLQKGEPLVAYQTLEKMIKSSHVPETSTFHSIL 558


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 178/364 (48%), Gaps = 4/364 (1%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           +M  L   P   TF  +   +    + + A+ +F  +   G R ++ ++ T++  LCK +
Sbjct: 142 KMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNR 201

Query: 188 KVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
            +  A  +F ++     + +V++YN + +G C + R + A  +L++M+ RG+ PN+ T+ 
Sbjct: 202 HLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFT 261

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
            ++  + + G+I EA   +  M +     DV TYT +++G    G +  AR +F  M + 
Sbjct: 262 ALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESN 321

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G  P+  TY  +I   CK   VE+   +F EM  KG + N+ TY V+I+G C  G  + A
Sbjct: 322 GYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVA 381

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
            E   +M      P+++TYN+L+   C  G +E+ L +F+ M       N+ TY I+I  
Sbjct: 382 QEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQG 441

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGR 486
           M    K +D   A  L   +  +G  P   T+  +++G    G    A  + +     G 
Sbjct: 442 MCKVGKVED---AFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEADALFKKMKEDGF 498

Query: 487 LPRQ 490
           LP +
Sbjct: 499 LPNE 502



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 168/366 (45%), Gaps = 17/366 (4%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
            F+ A+DL  R+   R + ++V   + LS+    K F             D  + +F  M
Sbjct: 62  QFNEALDLFTRMVHSRPLPSIVDFTRLLSVIAKMKRF-------------DVVISLFEQM 108

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRT 223
              G    L + N +++ +C+  +  +A   L K+ +  F+ D++++  + +G+C   R 
Sbjct: 109 QILGISPVLYTCNIVMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRI 168

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
             AL +  ++V  G  PN+ TY  ++    +   +  A   F +M       +VVTY ++
Sbjct: 169 EDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSL 228

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           V G   +G    A  +   M+  G+ P+V T+ A+I    K   +  A  +++ M+    
Sbjct: 229 VSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSV 288

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+  TY  +I GLC  G ++ A +    M+ +   PN  TY  LI  FC +  +E G +
Sbjct: 289 YPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTK 348

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           +F +M     + N  TY +LI    +  + D   VA ++  +M  R   P   T+N +L+
Sbjct: 349 IFYEMSQKGLVANTITYTVLIQGYCLVGRPD---VAQEVFNQMGSRRAPPDIRTYNVLLD 405

Query: 464 GLLLIG 469
           GL   G
Sbjct: 406 GLCYNG 411



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 129/245 (52%), Gaps = 1/245 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F   ID   ++        L   M  +S+ P   T+  +     + G+ D A ++F  M
Sbjct: 259 TFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLM 318

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
             +G   +  ++ T++   CK K+VE    +F     K   A+ I+Y V+  G+CLV R 
Sbjct: 319 ESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRP 378

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A EV  +M  R   P++ TYN++L G    G +E+A   F  M+KR+ +I++VTYT I
Sbjct: 379 DVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTII 438

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G   VG+++ A ++F  + + G+ P+V TY  MI   C++  +  A  +F++M   G+
Sbjct: 439 IQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEADALFKKMKEDGF 498

Query: 344 MPNST 348
           +PN +
Sbjct: 499 LPNES 503



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 114/253 (45%), Gaps = 9/253 (3%)

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR---ARN 298
            + Y  +L+      Q  EA   F  M   +    +V +T ++    V+ ++KR     +
Sbjct: 47  FSNYRKILRNGLHNLQFNEALDLFTRMVHSRPLPSIVDFTRLL---SVIAKMKRFDVVIS 103

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
           +F+ M   G+ P + T N ++  +C+      A     +M+  G+ P+  T+  ++ G C
Sbjct: 104 LFEQMQILGISPVLYTCNIVMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFC 163

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLD 418
           H   +E AL    ++      PNV TY  LI   C    +   +E+F +MG     PN+ 
Sbjct: 164 HWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVV 223

Query: 419 TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           TYN L+S +    +  D   A  LL +M+ RG  P   TF  +++  + +G    AKE+ 
Sbjct: 224 TYNSLVSGLCEIGRWSD---AAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELY 280

Query: 479 RLQSRCGRLPRQF 491
           ++  +    P  F
Sbjct: 281 KVMIQMSVYPDVF 293


>gi|242062226|ref|XP_002452402.1| hypothetical protein SORBIDRAFT_04g025130 [Sorghum bicolor]
 gi|241932233|gb|EES05378.1| hypothetical protein SORBIDRAFT_04g025130 [Sorghum bicolor]
          Length = 506

 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 199/414 (48%), Gaps = 14/414 (3%)

Query: 57  TQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFF-NILSYHPTYAHSPSSFDHAIDLAAR 115
           T    C  +  T  + D +++R  +    AL FF    S    Y+H+P + +  +DL  +
Sbjct: 75  TLAAECSEVRLTSGVADSLLRRCGDDWKSALGFFLWAQSRGGGYSHTPCACNRMVDLLGK 134

Query: 116 LRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS 175
           +R    +W L+  M    L  T  T A    R  +A +   A+ +F  + + G  ++  +
Sbjct: 135 MRQIDRMWDLLSEMHCRGL-VTVDTIAKSIRRLAAARRWRDAILLFDQLEDLGLERNTET 193

Query: 176 FNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235
            N +LD LCKE+KVE A  +F +       D  ++N+  +GWC V+R ++A+  ++EM +
Sbjct: 194 MNVLLDALCKERKVELAREVFVMLSPHIAPDAYTFNIFVHGWCSVRRIDEAMWTIEEMKN 253

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
           RG  P + TY  VL+ Y +       +     M  + C  +V+TYT I+         + 
Sbjct: 254 RGFPPIVITYTAVLEAYCKQRNFRRVYEILDSMSSQGCHPNVITYTMIMTSLTKCERFEE 313

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP-NSTTYNVVI 354
           A +V D M + G  P    YNA+I +L +   +  A  VF   + +  +P N  TYN +I
Sbjct: 314 ALSVSDRMKSSGCKPDTLFYNALINLLGRAGHLFEANQVFRVEMPRNVVPRNVATYNTMI 373

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF----CDAGEIERGL-ELFEKMG 409
             LC  G  + AL+ +  M+   C+P++QTY  L+R         G I   L EL ++ G
Sbjct: 374 SILCQYGRDDDALDVLKEMEAQSCKPDLQTYQPLLRLLFGRRGQTGAIHHLLSELRDRNG 433

Query: 410 SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
            G+   +LDTY +LI  +    ++D    A +L  EMV    +PR  T   +L+
Sbjct: 434 LGL---DLDTYTLLIHGLCRVGETD---WAYQLYDEMVGSEIVPRPKTCELLLS 481



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 75/183 (40%), Gaps = 5/183 (2%)

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
           GG   +    N M+ +L K   ++    +  EM  +G +   T    + R        + 
Sbjct: 116 GGYSHTPCACNRMVDLLGKMRQIDRMWDLLSEMHCRGLVTVDTIAKSIRRLAAARRWRDA 175

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
            L F  +++D   E N +T N+L+   C   ++E   E+F  +   +  P+  T+NI + 
Sbjct: 176 ILLF-DQLEDLGLERNTETMNVLLDALCKERKVELAREVFVMLSPHIA-PDAYTFNIFVH 233

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
                ++ D+ +     + EM +RGF P   T+  VL       N     EIL   S  G
Sbjct: 234 GWCSVRRIDEAMWT---IEEMKNRGFPPIVITYTAVLEAYCKQRNFRRVYEILDSMSSQG 290

Query: 486 RLP 488
             P
Sbjct: 291 CHP 293


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 102/342 (29%), Positives = 176/342 (51%), Gaps = 5/342 (1%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           W +   M    + P   T+  + + +   G   +  K+ LS  E  C+ +L ++N  +  
Sbjct: 227 WKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKG-KMVLSEMEKECKPNLFTYNAFIGG 285

Query: 183 LCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           LC+   V++A  + K+   K    D  +Y ++ +G+C  KR+ +A  + + M   GLNPN
Sbjct: 286 LCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPN 345

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
             TY  ++ G+ + G IEEA R   EM  R  +++VVTY  ++ G    GE+ +A ++F+
Sbjct: 346 RFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFN 405

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M+  G+ P   TYN +I    K   +  A  +  EM  +   P+  TY+V+I GLCH+ 
Sbjct: 406 EMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSS 465

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
           ++++A E + +M  +  +PNV  Y  LI+ +      E  +EL + M +   LP+L  YN
Sbjct: 466 DLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYN 525

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
            LI  +   KK ++   A  LL++M ++G  P   T+   +N
Sbjct: 526 CLIIGLCRAKKVEE---AKMLLVDMGEKGIKPNAHTYGAFIN 564



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 185/377 (49%), Gaps = 7/377 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   +  D      L+  MK+  L P+  T++++      +    +A ++   M
Sbjct: 418 TYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQM 477

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
             +G + ++  + T++    +E + E A  L K+        D+  YN +  G C  K+ 
Sbjct: 478 IRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKV 537

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A  +L +M ++G+ PN  TY   +  Y ++G+I+ A R+F +M       + V YT +
Sbjct: 538 EEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTIL 597

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G   VG    A + F  M+  G++P +  Y+A+I  L K    + A+ VF + +  G 
Sbjct: 598 IKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGV 657

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
           +P+   YN +I G C  G++E+A +    M  +   PN+  YN LI   C  GE+ +  E
Sbjct: 658 VPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARE 717

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           LF+++     +P++ TY+ +I       KS +L  A KL  EM+ +G  P  + +  +++
Sbjct: 718 LFDEIEEKDLVPDVVTYSTIIDGYC---KSGNLTEAFKLFDEMISKGISPDGYIYCILID 774

Query: 464 GLLLIGNQGLAKEILRL 480
           G    G +G  ++ L L
Sbjct: 775 G---CGKEGNLEKALSL 788



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 171/365 (46%), Gaps = 6/365 (1%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M    LGP   T+ ++ + +    ++  A  IF SM   G   +  ++  ++D   KE  
Sbjct: 302 MMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGN 361

Query: 189 VEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
           +E+A  +    + RG  K +V++YN +  G        KA+ +  EM+  GL P+  TYN
Sbjct: 362 IEEALRIKDEMITRG-LKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYN 420

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
           +++ GY ++  + +A     EMK RK      TY+ ++ G     ++++A  V D M+  
Sbjct: 421 LLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRN 480

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           GV P+V  Y  +I+   ++   E AI + + M+  G +P+   YN +I GLC   ++E A
Sbjct: 481 GVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEA 540

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
              +  M +   +PN  TY   I  +  +GEI+     F+ M S   +PN   Y ILI  
Sbjct: 541 KMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKG 600

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGR 486
                 + + L   K ++E   +G +P    ++ +++ L   G    A  +     + G 
Sbjct: 601 HCDVGNTVEALSTFKCMLE---KGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGV 657

Query: 487 LPRQF 491
           +P  F
Sbjct: 658 VPDVF 662



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 158/326 (48%), Gaps = 3/326 (0%)

Query: 102 SPSSFDHAIDLAA--RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           +PS F +++ ++      D +    ++ +M    + P    +  + + YV   + + A++
Sbjct: 448 TPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIE 507

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWC 218
           +   M  +G    L  +N ++  LC+ KKVE+A  L      K  K +  +Y    N + 
Sbjct: 508 LLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYS 567

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
                  A    K+M+  G+ PN   Y I++KG+   G   EA   F  M ++    D+ 
Sbjct: 568 KSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIR 627

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
            Y+ I+H     G+ K A  VF   +  GV+P V  YN++I   CK+  +E A  +++EM
Sbjct: 628 AYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEM 687

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
           +  G  PN   YN +I GLC  GE+ +A E    +++ +  P+V TY+ +I  +C +G +
Sbjct: 688 LHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNL 747

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILI 424
               +LF++M S    P+   Y ILI
Sbjct: 748 TEAFKLFDEMISKGISPDGYIYCILI 773



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 166/357 (46%), Gaps = 40/357 (11%)

Query: 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVI 208
           A K + A  + + M E G + + +++   ++L  K  +++ A   FK  +  G    +VI
Sbjct: 534 AKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVI 593

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
            Y ++  G C V  T +AL   K M+++GL P++  Y+ ++    + G+ +EA   FL+ 
Sbjct: 594 -YTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKF 652

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
            K     DV  Y +++ GF   G+I++A  ++D M++ G+ P++  YN +I  LCK   V
Sbjct: 653 LKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEV 712

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN------- 381
             A  +F+E+  K  +P+  TY+ +I G C +G +  A +    M      P+       
Sbjct: 713 TKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCIL 772

Query: 382 ---------------------------VQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
                                      +  +N LI  FC  G++    ELF+ M      
Sbjct: 773 IDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLT 832

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
           PN+ TY ILI +     K++ +  A +L ++M  R  +P   T+  +L     IGN+
Sbjct: 833 PNIVTYTILIDAY---GKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNR 886



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 110/461 (23%), Positives = 188/461 (40%), Gaps = 70/461 (15%)

Query: 100  AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
            AH+  +F   I+L ++  + +        M S  + P    + I+ + +   G    A+ 
Sbjct: 556  AHTYGAF---INLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALS 612

Query: 160  IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWC 218
             F  M E G    + +++ I+  L K  K ++A  +F K  +     DV  YN + +G+C
Sbjct: 613  TFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFC 672

Query: 219  LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
                  KA ++  EM+  G+NPN+  YN ++ G  + G++ +A   F E++++    DVV
Sbjct: 673  KEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVV 732

Query: 279  TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP---------------------------- 310
            TY+TI+ G+   G +  A  +FD M++ G+ P                            
Sbjct: 733  TYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEA 792

Query: 311  ------SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
                  S++ +N++I   CK   V  A  +F++MV K   PN  TY ++I        ME
Sbjct: 793  QQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMME 852

Query: 365  RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
             A +    M+     PN  TY  L+  +   G   + + LF+ M +     +   Y ++ 
Sbjct: 853  EAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMA 912

Query: 425  SSMFVRKKS------------------DDLLVA--------------GKLLIEMVDRGFM 452
            S+     KS                  DD+  A               +LL EM      
Sbjct: 913  SAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELS 972

Query: 453  PRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQFKL 493
                T N +L G    GN+  A ++L +  R G +P    L
Sbjct: 973  LSSKTCNTLLLGFYKSGNEDEASKVLGVMQRLGWVPTSLSL 1013



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 118/515 (22%), Positives = 204/515 (39%), Gaps = 90/515 (17%)

Query: 38  ADPAALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHP 97
           A+   L   I  ++ PR +  T    +  + PQ+        WN+   ++HF    + +P
Sbjct: 2   ANALCLIRQIAANSSPRRILSTFPFQTTSF-PQI--------WNNV--SIHFMFFSTNNP 50

Query: 98  TYAHSPSSFDHAIDLAARLRDY-----RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAG 152
                   FDH  D    +R++     R  W ++   +       +K    I    +   
Sbjct: 51  --------FDHYDD---TVREFSMILKRKDWQILLNNED----NVRKLNPEIVCSVLQKS 95

Query: 153 KADRAVKI----FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN-------------- 194
           + D +V++    + S  +    Q L+S++ +   LC    + +A N              
Sbjct: 96  EIDDSVRLQNFFYWSSSKMSTPQYLHSYSILAIRLCNSGLIHQADNMLEKLLQTRKPPLE 155

Query: 195 ----LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250
               L + +R    +++  +++  + + ++   N+A  V    +  G  P L   N +++
Sbjct: 156 ILDSLVRCYREFGGSNLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMR 215

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR------------- 297
              +A  +   W+ +  M + K   DV TYT ++     VG++ + +             
Sbjct: 216 DLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKECKPN 275

Query: 298 ----NVFDG-----------------MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE 336
               N F G                 M+  G+ P   TY  ++   CK+   + A L+FE
Sbjct: 276 LFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFE 335

Query: 337 EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
            M   G  PN  TY  +I G    G +E AL     M     + NV TYN +I     AG
Sbjct: 336 SMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAG 395

Query: 397 EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
           E+ + + LF +M      P+  TYN+LI       KS D+  A +LL EM  R   P  F
Sbjct: 396 EMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYL---KSHDMAKACELLAEMKARKLTPSPF 452

Query: 457 TFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           T++ +++GL    +   A E+L    R G  P  F
Sbjct: 453 TYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVF 487


>gi|255584056|ref|XP_002532772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527482|gb|EEF29611.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 647

 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 133/520 (25%), Positives = 227/520 (43%), Gaps = 44/520 (8%)

Query: 8   PPKNHLHFFCIYRGLSPLTTTSPAPLPPAAADPAALASLILTSTDPRTLTQTLHCPSLHW 67
           PP   +  F     LS + + +   L P+      LA L  +S     L    H   +  
Sbjct: 50  PPPEWIDPFV---DLSDVASRTHQDLKPSPWVNQILALLDGSSNMESNLDTFCHMFLIKL 106

Query: 68  TPQLVDQIIK--RLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTL 125
           +P  V  I++   L      A+ FF        Y H+   +   ID+ A      +V ++
Sbjct: 107 SPSFVSFILRSTELQTKPDVAIRFFTWAGKQKKYTHNLECYVSLIDVLATNGVLDSVKSV 166

Query: 126 VHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185
             + K + L  T  +   + + + + G  +  + ++  M E+G   SL S+N +++ L  
Sbjct: 167 FSKFKEMGLIMTVYSSNSLIKSFGNLGMVEEVLWVWRRMKENGIEPSLFSYNFLVNGLVN 226

Query: 186 EKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
            K +E A  +F+V   GK   DV++YN +  G+C V +T KA E LK M  R + P+  T
Sbjct: 227 SKFIESAERVFEVMENGKIGPDVVTYNTMIKGYCEVGKTRKAFEKLKAMELRNVAPDKIT 286

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           Y  +++  +  G  +     + EM ++  EI    Y+ ++ G    G+      VF+ M+
Sbjct: 287 YMTLIQACYAEGDFDSCLGLYHEMDEKGLEIPPHVYSLVIGGLCKDGKRVEGYTVFENMI 346

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
           + G   +VA Y A+I    K  ++  A+L+F+ M  +G  P+  TY V++  LC +G ++
Sbjct: 347 SKGCKANVAIYTALIDSNAKCGNMGEAMLLFKRMKKEGLEPDEVTYGVIVNSLCKSGRLD 406

Query: 365 RALEFV-------------------------GRMKDDE----------CEPNVQTYNILI 389
            ALE++                         GR+ + E          C P+   YN LI
Sbjct: 407 EALEYMEFCSGKGVAVNAMFYSSLIDGLGKSGRVDEAERIFYEMVKKGCPPDSYCYNALI 466

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
                 G+I+  L L ++M    C   + TY ILI+ +F   ++++ L    L   M+D+
Sbjct: 467 DALAKCGKIDEALALSKRMEVDGCDQTVYTYTILITGLFREHRNEEALTLWDL---MIDK 523

Query: 450 GFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPR 489
           G  P    F  +  GL L G    A +IL   +  G +P 
Sbjct: 524 GITPTAAAFRALSTGLCLSGKVARACKILDEMAPMGVIPE 563



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 144/337 (42%), Gaps = 45/337 (13%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177
           D+ +   L H M    L      ++++       GK      +F +M   GC+ ++  + 
Sbjct: 299 DFDSCLGLYHEMDEKGLEIPPHVYSLVIGGLCKDGKRVEGYTVFENMISKGCKANVAIYT 358

Query: 178 TILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
            ++D   K   + +A  LFK  + +  + D ++Y VI N  C   R ++ALE ++    +
Sbjct: 359 ALIDSNAKCGNMGEAMLLFKRMKKEGLEPDEVTYGVIVNSLCKSGRLDEALEYMEFCSGK 418

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC----------------------- 273
           G+  N   Y+ ++ G  ++G+++EA R F EM K+ C                       
Sbjct: 419 GVAVNAMFYSSLIDGLGKSGRVDEAERIFYEMVKKGCPPDSYCYNALIDALAKCGKIDEA 478

Query: 274 -------EID-----VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
                  E+D     V TYT ++ G       + A  ++D M++ G+ P+ A + A+   
Sbjct: 479 LALSKRMEVDGCDQTVYTYTILITGLFREHRNEEALTLWDLMIDKGITPTAAAFRALSTG 538

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           LC    V  A  + +EM   G +P  T ++ +I  LC  G ++ A +    + D   E  
Sbjct: 539 LCLSGKVARACKILDEMAPMGVIPE-TAFDDMINILCKAGRIKEACKLADGIVDRGREIP 597

Query: 382 VQTYNILIRYFCDAGEIERGLEL--------FEKMGS 410
            +   +LI     AG  +  L+L        +++MGS
Sbjct: 598 GRVRTVLINALRKAGNADLALKLMRSKIGIGYDRMGS 634


>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
 gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
           [Arabidopsis thaliana]
 gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 101/302 (33%), Positives = 172/302 (56%), Gaps = 12/302 (3%)

Query: 175 SFNTILDLLCKEKKVEKAYNLF---KVFRGKFKADVISYNVIANGWCLVK---RTNKALE 228
           +FN +++ LCK  K+ KA ++    KV+      +V+SYN + +G+C +    +  KA  
Sbjct: 225 TFNVVINALCKTGKMNKARDVMEDMKVY--GCSPNVVSYNTLIDGYCKLGGNGKMYKADA 282

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           VLKEMV+  ++PNLTT+NI++ G+++   +  + + F EM  +  + +V++Y ++++G  
Sbjct: 283 VLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLC 342

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G+I  A ++ D MV+ GV P++ TYNA+I   CK D ++ A+ +F  + G+G +P + 
Sbjct: 343 NGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTR 402

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            YN++I   C  G+++        M+ +   P+V TYN LI   C  G IE   +LF+++
Sbjct: 403 MYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQL 462

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
            S   LP+L T++IL+     + +S     A  LL EM   G  PR  T+N V+ G    
Sbjct: 463 TSK-GLPDLVTFHILMEGYCRKGESRK---AAMLLKEMSKMGLKPRHLTYNIVMKGYCKE 518

Query: 469 GN 470
           GN
Sbjct: 519 GN 520



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 126/502 (25%), Positives = 227/502 (45%), Gaps = 49/502 (9%)

Query: 20  RGLSPLTTTSPAPLPPAAADPAALASLI-----------LTSTDPRTLTQTLHCPSLH-- 66
           R  S  +T + +P PP   D A +A LI           +T  +P  L + L    L   
Sbjct: 24  RLCSSSSTITGSPCPPRY-DVAVIADLIEKQHWSKLGVHVTDINPNELFRQLISSELDPD 82

Query: 67  -------WTPQLVD-----QIIKRLWNHALKALHFFNILSYHPTYAHSPSSFD-HAIDLA 113
                  W  +  D     ++  +L +    A  +  I S+   +  + S    H+I  A
Sbjct: 83  LCLRYYSWLVKNSDISVSLELTFKLLHSLANAKRYSKIRSFLDGFVRNGSDHQVHSIFHA 142

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
             + D   V +++  M  L+              Y +  + +   + F     +G + S 
Sbjct: 143 ISMCDNVCVNSIIADMLVLA--------------YANNSRFELGFEAFKRSGYYGYKLSA 188

Query: 174 NSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
            S   ++  L KE +      ++K + R K + +V ++NV+ N  C   + NKA +V+++
Sbjct: 189 LSCKPLMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMED 248

Query: 233 MVDRGLNPNLTTYNIVLKGYFR---AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289
           M   G +PN+ +YN ++ GY +    G++ +A     EM +     ++ T+  ++ GF  
Sbjct: 249 MKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWK 308

Query: 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
              +  +  VF  M++  V P+V +YN++I  LC    +  AI + ++MV  G  PN  T
Sbjct: 309 DDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLIT 368

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
           YN +I G C    ++ AL+  G +K     P  + YN+LI  +C  G+I+ G  L E+M 
Sbjct: 369 YNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEME 428

Query: 410 SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
               +P++ TYN LI+ +    ++ ++  A KL  ++  +G +P   TF+ ++ G    G
Sbjct: 429 REGIVPDVGTYNCLIAGLC---RNGNIEAAKKLFDQLTSKG-LPDLVTFHILMEGYCRKG 484

Query: 470 NQGLAKEILRLQSRCGRLPRQF 491
               A  +L+  S+ G  PR  
Sbjct: 485 ESRKAAMLLKEMSKMGLKPRHL 506



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 180/370 (48%), Gaps = 27/370 (7%)

Query: 91  NILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVW---TLVHRMKSLSLGPTQKTFAIIA 145
           +++     Y  SP+  S++  ID   +L     ++    ++  M    + P   TF I+ 
Sbjct: 244 DVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILI 303

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFK 204
           + +        ++K+F  M +   + ++ S+N++++ LC   K+ +A ++  K+     +
Sbjct: 304 DGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQ 363

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
            ++I+YN + NG+C      +AL++   +  +G  P    YN+++  Y + G+I++ +  
Sbjct: 364 PNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFAL 423

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
             EM++     DV TY  ++ G    G I+ A+ +FD + + G LP + T++ +++  C+
Sbjct: 424 KEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKG-LPDLVTFHILMEGYCR 482

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM-KDDECEPNVQ 383
           K     A ++ +EM   G  P   TYN+V++G C  G ++ A     +M K+     NV 
Sbjct: 483 KGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVA 542

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
           +YN+L++ +   G++E    L  +M     +PN  TY I+                    
Sbjct: 543 SYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKE------------------ 584

Query: 444 IEMVDRGFMP 453
            EMVD+GF+P
Sbjct: 585 -EMVDQGFVP 593



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 108/212 (50%), Gaps = 17/212 (8%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           PT + + ++ + Y   GK D    +   M   G    + ++N ++  LC+   +E A  L
Sbjct: 399 PTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKL 458

Query: 196 FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
           F     K   D+++++++  G+C    + KA  +LKEM   GL P   TYNIV+KGY + 
Sbjct: 459 FDQLTSKGLPDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKE 518

Query: 256 GQIEEAWRFFLEM-KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
           G ++ A     +M K+R+  ++V +Y  ++ G+   G+++ A  + + M+  G++P+  T
Sbjct: 519 GNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRIT 578

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
           Y                 +V EEMV +G++P+
Sbjct: 579 YE----------------IVKEEMVDQGFVPD 594


>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 539

 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 106/381 (27%), Positives = 191/381 (50%), Gaps = 40/381 (10%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           +L+H          +  +  I       GK   A+++F  M +     +L  +NT++D L
Sbjct: 161 SLLHEYVDRGFRFDEVCYGTIINGLCKIGKTRDAIQMFPKMKKIRVYPNLIMYNTVIDGL 220

Query: 184 CKEKKVEKAYNL-FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG-LNPN 241
           CK+  V++A  L  ++     + DV SYN + +G+C V R   A+++L EMV RG + P+
Sbjct: 221 CKQGLVDEACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPD 280

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           + T+NI++ G  + G++ EA+     M KR  + D+V+Y  +++G+ + G +  A+ VFD
Sbjct: 281 VYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFD 340

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            MV    LP+V +Y  +I   CK   V+ A+++  EM  K  +P++ TYN ++ GL  +G
Sbjct: 341 KMVERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSG 400

Query: 362 -----------------------------------EMERALEFVGRMKDDECEPNVQTYN 386
                                              + ++AL     + +    PN++TYN
Sbjct: 401 RSLYEWDLVEAMRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIRTYN 460

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
           IL+   C +G ++   E+F+ + +  C PN+ TYNI+I  +      D+   A  LL +M
Sbjct: 461 ILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTYNIMIHGLCKEGFLDE---AEALLYKM 517

Query: 447 VDRGFMPRKFTFNRVLNGLLL 467
           V+  ++P   TF+ ++  +L+
Sbjct: 518 VNNNYLPNYITFDTIVRAILV 538



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 150/286 (52%), Gaps = 4/286 (1%)

Query: 148 YVSAGKADRAVKIFLSMHEHG-CRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFK 204
           + S G+   AVK+   M   G     + +FN ++D LCK  +V +AYN+  V   RG +K
Sbjct: 255 FCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRG-WK 313

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
            D++SYN + NG+CL     +A +V  +MV+R   PN+ +Y  ++ GY +   ++EA   
Sbjct: 314 PDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCTLINGYCKVRMVDEAMVL 373

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
             EM  +    D VTY  ++ G    G      ++ + M   G    + TYN ++    K
Sbjct: 374 LTEMHNKNLVPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFK 433

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
            +  + A+ +F+ ++  G  PN  TYN+++ GLC +G ++ A E    +    C+PN++T
Sbjct: 434 HEKFDKALALFQHIIEIGISPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRT 493

Query: 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
           YNI+I   C  G ++    L  KM +   LPN  T++ ++ ++ V+
Sbjct: 494 YNIMIHGLCKEGFLDEAEALLYKMVNNNYLPNYITFDTIVRAILVK 539



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 114/422 (27%), Positives = 193/422 (45%), Gaps = 43/422 (10%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSL-SLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           F+  +    +L+ Y  V +L   ++S  ++ P+  TF+I+   +   G+   A  +  ++
Sbjct: 72  FNKLLSTLIKLKRYNAVVSLYTILQSKPTIKPSLITFSILINAFAQLGQMGFAFSLLGNI 131

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKR 222
            + G +  +    T++  LC + +V +A +L    V RG F+ D + Y  I NG C + +
Sbjct: 132 LKMGFQIDVRILTTLMKGLCLKGRVLEAVSLLHEYVDRG-FRFDEVCYGTIINGLCKIGK 190

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
           T  A+++  +M    + PNL  YN V+ G  + G ++EA     EM +   E+DV +Y +
Sbjct: 191 TRDAIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNS 250

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVL--------------------------------- 309
           ++HGF  VG  + A  + D MV  G +                                 
Sbjct: 251 MIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKR 310

Query: 310 ---PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
              P + +YNA++   C   SV  A  VF++MV +  +PN  +Y  +I G C    ++ A
Sbjct: 311 GWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCTLINGYCKVRMVDEA 370

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
           +  +  M +    P+  TYN L+     +G      +L E M +     +L TYN+L+  
Sbjct: 371 MVLLTEMHNKNLVPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDD 430

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGR 486
            F  +K D  L   + +IE+   G  P   T+N +L+GL   G    AKEI +L S  G 
Sbjct: 431 YFKHEKFDKALALFQHIIEI---GISPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGC 487

Query: 487 LP 488
            P
Sbjct: 488 QP 489


>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16710, mitochondrial; Flags: Precursor
 gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 507

 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 125/484 (25%), Positives = 209/484 (43%), Gaps = 46/484 (9%)

Query: 48  LTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHS---PS 104
           L  ++PRT      C    W         +++  + L  L F + L       HS   PS
Sbjct: 25  LQISNPRTAASLSLCGFCFWIRAFSSY--RKILRNGLHNLQFNDALDLFTRMVHSRPLPS 82

Query: 105 --SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFL 162
              F   + + A++  Y  V +L  +M+ L + P   T  I+      + +  RA     
Sbjct: 83  IIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLG 142

Query: 163 SMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVK 221
            M + G    L +F ++L+  C   ++E A  LF    G  FK +V++Y  +    C  +
Sbjct: 143 KMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNR 202

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
             N A+E+  +M   G  PN+ TYN ++ G    G+  +A     +M KR+ E +V+T+T
Sbjct: 203 HLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFT 262

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC------------------ 323
            ++  F  VG++  A+ +++ M+   V P V TY ++I  LC                  
Sbjct: 263 ALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERN 322

Query: 324 -----------------KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
                            K   VE+ + +F EM  KG + N+ TY V+I+G C  G  + A
Sbjct: 323 GCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVA 382

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
            E   +M      P+++TYN+L+   C  G++E+ L +FE M       N+ TY I+I  
Sbjct: 383 QEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQG 442

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGR 486
           M    K +D   A  L   +  +G  P   T+  +++G    G    A  + +     G 
Sbjct: 443 MCKLGKVED---AFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGF 499

Query: 487 LPRQ 490
           LP +
Sbjct: 500 LPNE 503



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 156/345 (45%), Gaps = 8/345 (2%)

Query: 80  WNHALKALHFFNI---LSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGP 136
           WN    A+  F+    + + P       ++   I    + R       L ++M +    P
Sbjct: 166 WNRIEDAIALFDQILGMGFKPNVV----TYTTLIRCLCKNRHLNHAVELFNQMGTNGSRP 221

Query: 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF 196
              T+  +       G+   A  +   M +     ++ +F  ++D   K  K+ +A  L+
Sbjct: 222 NVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELY 281

Query: 197 KVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
            V  +     DV +Y  + NG C+    ++A ++   M   G  PN   Y  ++ G+ ++
Sbjct: 282 NVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKS 341

Query: 256 GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
            ++E+  + F EM ++    + +TYT ++ G+ +VG    A+ VF+ M +    P + TY
Sbjct: 342 KRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTY 401

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           N ++  LC    VE A+++FE M  +    N  TY ++I+G+C  G++E A +    +  
Sbjct: 402 NVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFS 461

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
              +PNV TY  +I  FC  G I     LF+KM     LPN   Y
Sbjct: 462 KGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVY 506



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 110/250 (44%), Gaps = 3/250 (1%)

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
            ++Y  +L+      Q  +A   F  M   +    ++ +T ++     +       ++F+
Sbjct: 48  FSSYRKILRNGLHNLQFNDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFE 107

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M   G+ P + T N ++  +C       A     +M+  G+ P+  T+  ++ G CH  
Sbjct: 108 QMQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWN 167

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
            +E A+    ++     +PNV TY  LIR  C    +   +ELF +MG+    PN+ TYN
Sbjct: 168 RIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYN 227

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481
            L++ +    +  D   A  LL +M+ R   P   TF  +++  + +G    AKE+  + 
Sbjct: 228 ALVTGLCEIGRWGD---AAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVM 284

Query: 482 SRCGRLPRQF 491
            +    P  F
Sbjct: 285 IQMSVYPDVF 294


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 112/394 (28%), Positives = 182/394 (46%), Gaps = 32/394 (8%)

Query: 123 WTLVHRMKSL-SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG------------- 168
           W +  RM ++  + P + T+A + E    AG + R  + F  M E               
Sbjct: 401 WEVYERMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPE 460

Query: 169 --------CRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCL 219
                   CR +L ++NT++  L K   V  A  L + +       DVI++N + +G C 
Sbjct: 461 VDFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCK 520

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
            +R   A  V K  ++RG  PN+ TY+ ++ G  +  +++EA +   +M +  C  + VT
Sbjct: 521 EQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVT 580

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y+T+V G   VG ++ A  V   M + G LP   TYN +I    K+  +  A+ +  EM+
Sbjct: 581 YSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREML 640

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             G+ P+  TY  +  GLC +G  + A+E +  M    C PN  TY+ ++   C AG + 
Sbjct: 641 EAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVT 700

Query: 400 RGLELFEKMG-SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
             L  FEKM    V  P++  Y+ LI  +    + D+   A + L  M+  G +P   TF
Sbjct: 701 EALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDE---AYEFLERMIRAGRIPDVVTF 757

Query: 459 NRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQFK 492
           + ++NGL   G      E+      CG   R  K
Sbjct: 758 SILINGLCDAGRIDTGLELF-----CGMAERGCK 786



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 180/386 (46%), Gaps = 7/386 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   ID  +++        L+ +M  L       T++ + +  +  G+ + AV +   M
Sbjct: 545 TYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQM 604

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRT 223
            + GC     ++NT++D   K +++ +A  L + +    F   V++Y  + +G C   R 
Sbjct: 605 RDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRF 664

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI-DVVTYTT 282
           ++A+E+L  M  RG  PN  TY+ ++ G  +AG++ EA  +F +M + +     V+ Y+ 
Sbjct: 665 DEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSA 724

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++ G    G I  A    + M+  G +P V T++ +I  LC    ++  + +F  M  +G
Sbjct: 725 LIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERG 784

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
              +   YN +I   C  GE   A   +  MK      N  T+ I+I+  C    I+  +
Sbjct: 785 CKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAV 844

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
             F  +    C   + +YN LI+S+   ++S+  L   +LL  MV  G  P    +  V+
Sbjct: 845 SYFHSIPED-CRDEI-SYNTLITSLVASRRSEQAL---ELLRAMVADGGSPDACNYMTVM 899

Query: 463 NGLLLIGNQGLAKEILRLQSRCGRLP 488
           +GL   G+  +A ++L+     G  P
Sbjct: 900 DGLFKAGSPEVAAKLLQEMRSRGHSP 925



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 108/412 (26%), Positives = 198/412 (48%), Gaps = 33/412 (8%)

Query: 102 SPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           SP+  +F  A+D  ++  +    +     M    + P   T+  + +    AGK D A+ 
Sbjct: 208 SPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALG 267

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCL 219
           +   + +   +  + +F+++L  LC+  ++E+A  L K        +V+ +N + NG C 
Sbjct: 268 L---LRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAM--PCVPNVVCFNSLMNGLCQ 322

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK-CEIDVV 278
            +R ++A E+   M + G + ++ TYNI+LKG  +  +I EA+R    M++ + C  +VV
Sbjct: 323 ARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVV 382

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVN-GGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           T++T++ G    G + +A  V++ MV   G+ P+  TY  +++ LCK          FE+
Sbjct: 383 TFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQ 442

Query: 338 MVGKGYMPNST---------------------TYNVVIRGLCHTGEMERALEFVGRMKDD 376
           M+ + +  +S+                     TYN ++ GL  +G +  AL  +  M + 
Sbjct: 443 MLEREWRSSSSWPIHSPEVDFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIES 502

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
              P+V T+N ++   C    I     +F++     C PN+ TY+ LI  +    K D+ 
Sbjct: 503 GLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEA 562

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           L   +LL +MV+ G      T++ V++GLL +G    A  +LR     G LP
Sbjct: 563 L---QLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLP 611



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 145/295 (49%), Gaps = 13/295 (4%)

Query: 175 SFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           ++N +++ LCK  +V  A+  F K  +  F+  V++Y+ + +G C     +K  ++L+EM
Sbjct: 3   TYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEM 62

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
             RG  PN  TYN ++      G+ +EA+     M    C  +++T+  I+ G    GEI
Sbjct: 63  AGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEI 122

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           + A  V D MV+ G +P V  +  ++  LC+   V+ A   F++++  G+ P++ TYN +
Sbjct: 123 EAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTM 182

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           + GL   G +E A   +  + +    P V T+ I +     AG +    E F+ M     
Sbjct: 183 VDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGV 242

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV---DRGFMPRKFTFNRVLNGL 465
            PN  TY+ LI         D L  AGKL I +    D+      F F+ +L+GL
Sbjct: 243 SPNTVTYDALI---------DGLCKAGKLDIALGLLRDKNSQAGMFAFSSLLHGL 288



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/412 (26%), Positives = 185/412 (44%), Gaps = 24/412 (5%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII 144
           KA+ F     + PT      ++   ID   R  +      L+  M      P   T+  +
Sbjct: 26  KAIQF----GFRPTVV----TYSTVIDGLCRDNEVDKGCKLLEEMAGRGCAPNAVTYNTL 77

Query: 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGK 202
               +  G+A  A  +   M  +GC   L +F  I+  LCKE ++E A+ +    V RG 
Sbjct: 78  VNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRG- 136

Query: 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262
           F  DV  + V+ +  C + R ++A    ++++  G  P+  TYN ++ G ++AG++E A 
Sbjct: 137 FVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAG 196

Query: 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322
                + +      V T+T  V G    G +  A   FD M   GV P+  TY+A+I  L
Sbjct: 197 MVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGL 256

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
           CK   ++ A+ +  +   K        ++ ++ GLC    +E A++ +  M    C PNV
Sbjct: 257 CKAGKLDIALGLLRD---KNSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAMP---CVPNV 310

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
             +N L+   C A  ++   ELF+ M    C  ++ TYNIL+  +   ++    +     
Sbjct: 311 VCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLRR----IPEAYR 366

Query: 443 LIEMVDR--GFMPRKFTFNRVLNGLLLIGNQGLAKEIL-RLQSRCGRLPRQF 491
            +E++ R  G  P   TF+ ++ GL   G    A E+  R+ +  G  P +F
Sbjct: 367 HVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRF 418



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 174/363 (47%), Gaps = 7/363 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   + +  R    L+  M      P+  T+  +      +G+ D AV+I   M
Sbjct: 615 TYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYM 674

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKA-DVISYNVIANGWCLVKR 222
              GC  +  ++++I+D LCK  +V +A   F K+ R +  A  VI+Y+ + +G C   R
Sbjct: 675 AARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGR 734

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
            ++A E L+ M+  G  P++ T++I++ G   AG+I+     F  M +R C+ D+  Y  
Sbjct: 735 IDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNA 794

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           +++ + + GE   A  + + M   G+  +  T+  +I+ LC  D ++ A+  F  +    
Sbjct: 795 MINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPED- 853

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
              +  +YN +I  L  +   E+ALE +  M  D   P+   Y  ++     AG  E   
Sbjct: 854 -CRDEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAA 912

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           +L ++M S    P+L TY I+IS +    K+  L +A     EM+ +   P    ++ ++
Sbjct: 913 KLLQEMRSRGHSPDLRTYTIMISGL---SKAKQLPLACDYFEEMLRKNLKPDAIVYSSLI 969

Query: 463 NGL 465
           +  
Sbjct: 970 DAF 972



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 88/380 (23%), Positives = 160/380 (42%), Gaps = 39/380 (10%)

Query: 63   PSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTV 122
            P+      +VD + K       +AL +F  ++     A    ++   ID   +       
Sbjct: 681  PNAITYSSIVDGLCKA--GRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEA 738

Query: 123  WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
            +  + RM      P   TF+I+      AG+ D  +++F  M E GC+  + ++N +++ 
Sbjct: 739  YEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINA 798

Query: 183  LCKEKKVEKAYNLFKVFRGKFKA----------------------------------DVI 208
             C + +   AY L +  +    A                                  D I
Sbjct: 799  YCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPEDCRDEI 858

Query: 209  SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
            SYN +       +R+ +ALE+L+ MV  G +P+   Y  V+ G F+AG  E A +   EM
Sbjct: 859  SYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEM 918

Query: 269  KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
            + R    D+ TYT ++ G     ++  A + F+ M+   + P    Y+++I   CK D V
Sbjct: 919  RSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKV 978

Query: 329  ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
            ++A   ++ +   G  P  T Y+ ++  LC     ++ALE +  MK   CEP +  +  L
Sbjct: 979  DDA---WKLLRSSGIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEPGIHIWTSL 1035

Query: 389  IRYFCDAGEIERGLELFEKM 408
               +   G ++  ++L   +
Sbjct: 1036 ATAYVAEGRVDEAVKLVNDL 1055



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 165/362 (45%), Gaps = 45/362 (12%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           T+ ++      AG+   A   F    + G R ++ +++T++D LC++ +V+K   L +  
Sbjct: 3   TYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEM 62

Query: 200 RGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
            G+  A + ++YN + N      R  +A  +L+ M   G  P L T+ +++KG  + G+I
Sbjct: 63  AGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEI 122

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           E A+R   EM  R    DV  +T ++H    +G +  A   F  ++  G  P   TYN M
Sbjct: 123 EAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTM 182

Query: 319 IQVLCKKDSVENAILV-----------------------------------FEEMVGKGY 343
           +  L K   +E A +V                                   F+ M   G 
Sbjct: 183 VDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGV 242

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN+ TY+ +I GLC  G+++ AL   G ++D   +  +  ++ L+   C A  +E  ++
Sbjct: 243 SPNTVTYDALIDGLCKAGKLDIAL---GLLRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQ 299

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           L + M    C+PN+  +N L++ +   ++ D+   A +L   M + G      T+N +L 
Sbjct: 300 LLKAMP---CVPNVVCFNSLMNGLCQARRVDE---AFELFDVMKESGCSADVITYNILLK 353

Query: 464 GL 465
           GL
Sbjct: 354 GL 355



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 132/273 (48%), Gaps = 3/273 (1%)

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           +++YNV+ NG C   R   A    ++ +  G  P + TY+ V+ G  R  ++++  +   
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLE 60

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           EM  R C  + VTY T+V+     G  K A ++ + M   G  P + T+  +I+ LCK+ 
Sbjct: 61  EMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEG 120

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            +E A  V +EMV +G++P+   + V++  LC  G ++ A  F  ++      P+  TYN
Sbjct: 121 EIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYN 180

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            ++     AG +E    + + +      P + T+ I +  +    K+ +L  A +    M
Sbjct: 181 TMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGL---SKAGNLTGAYEFFDSM 237

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
              G  P   T++ +++GL   G   +A  +LR
Sbjct: 238 PQTGVSPNTVTYDALIDGLCKAGKLDIALGLLR 270


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 101/313 (32%), Positives = 168/313 (53%), Gaps = 4/313 (1%)

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           +F+ +++ LCK  K +KA ++ +  +   F   VI+YN I +G+C   +  KA  +LKEM
Sbjct: 231 TFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEM 290

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           V + ++PN  T+NI++ G+ R   +  A + F EM+++  + +VVTY ++++G    G++
Sbjct: 291 VAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKL 350

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
             A  + D M   G+ P+V TYNA+I   CKK  ++ A  + +++  +G  PN  T+N +
Sbjct: 351 DEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTL 410

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           I      G M+ A      M D    PNV TYN LI  FC  G ++   +L ++M     
Sbjct: 411 IDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGL 470

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGL 473
             +L TYNIL+ ++    K  +   A +LL EM + G  P   T+N +++G    GN   
Sbjct: 471 KADLVTYNILVDALC---KKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTA 527

Query: 474 AKEILRLQSRCGR 486
           A  +  L  + GR
Sbjct: 528 ALNVRTLMEKKGR 540



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/359 (28%), Positives = 185/359 (51%), Gaps = 10/359 (2%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +FD  I+   ++  ++    +V  MK+    P+  T+  I + Y  AGK  +A  +   M
Sbjct: 231 TFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEM 290

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRT 223
                  +  +FN ++D  C+++ V  A  +F+   R   + +V++YN + NG C   + 
Sbjct: 291 VAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKL 350

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           ++AL +  +M   GL PN+ TYN ++ G+ +   ++EA     ++ KR    +V+T+ T+
Sbjct: 351 DEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTL 410

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +  +G  G +  A  +   M++ GV P+V+TYN +I   C++ +V+ A  + +EM G G 
Sbjct: 411 IDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGL 470

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
             +  TYN+++  LC  GE  +A+  +  M +    P+  TYN LI  +   G     L 
Sbjct: 471 KADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALN 530

Query: 404 ---LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
              L EK G      N+ TYN+LI     + K ++   A +LL EM+++G +P + T++
Sbjct: 531 VRTLMEKKGRRA---NIVTYNVLIKGFCNKGKLEE---ANRLLNEMLEKGLIPNRTTYD 583



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 176/366 (48%), Gaps = 22/366 (6%)

Query: 91  NILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERY 148
           +++     +  SPS  +++  ID   +         L+  M +  + P + TF I+ + +
Sbjct: 250 DVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGF 309

Query: 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADV 207
                   A K+F  M   G + ++ ++N++++ LC   K+++A  L     G   K +V
Sbjct: 310 CRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNV 369

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           ++YN + NG+C  K   +A E+L ++  RGL PN+ T+N ++  Y +AG++++A+     
Sbjct: 370 VTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSM 429

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M       +V TY  ++ GF   G +K AR +   M   G+   + TYN ++  LCKK  
Sbjct: 430 MLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGE 489

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
              A+ + +EM   G  P+  TYN +I G    G    AL     M+      N+ TYN+
Sbjct: 490 TRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNV 549

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           LI+ FC+ G++E    L  +M     +PN  TY+IL                     EM+
Sbjct: 550 LIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRD-------------------EMM 590

Query: 448 DRGFMP 453
           ++GF+P
Sbjct: 591 EKGFIP 596



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 112/391 (28%), Positives = 181/391 (46%), Gaps = 22/391 (5%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQK---------------TFAIIAERYVS 150
           FD A D   RL        LV  +K   +G  +                TF ++      
Sbjct: 182 FDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCK 241

Query: 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVIS 209
            GK  +A  +   M   G   S+ ++NTI+D  CK  K+ KA  L K    K    + I+
Sbjct: 242 VGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEIT 301

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           +N++ +G+C  +    A +V +EM  +GL PN+ TYN ++ G    G+++EA     +M 
Sbjct: 302 FNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMS 361

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
               + +VVTY  +++GF     +K AR + D +   G+ P+V T+N +I    K   ++
Sbjct: 362 GMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMD 421

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
           +A L+   M+  G  PN +TYN +I G C  G ++ A +    M+ +  + ++ TYNIL+
Sbjct: 422 DAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILV 481

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
              C  GE  + + L ++M      P+  TYN LI   F    S   L    L   M  +
Sbjct: 482 DALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTL---MEKK 538

Query: 450 GFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           G      T+N ++ G     N+G  +E  RL
Sbjct: 539 GRRANIVTYNVLIKGFC---NKGKLEEANRL 566



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 81/250 (32%), Positives = 126/250 (50%), Gaps = 5/250 (2%)

Query: 217 WCLVK--RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
           W  VK    + ALE      D G   +  + N +L    + G+I      + EM +R+  
Sbjct: 167 WAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIG 226

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
           ++VVT+  +++G   VG+ ++A +V + M   G  PSV TYN +I   CK   +  A  +
Sbjct: 227 VNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADAL 286

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
            +EMV K   PN  T+N++I G C    +  A +    M+    +PNV TYN LI   C 
Sbjct: 287 LKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCS 346

Query: 395 AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
            G+++  L L +KM      PN+ TYN LI+  F +KK   L  A ++L ++  RG  P 
Sbjct: 347 NGKLDEALGLQDKMSGMGLKPNVVTYNALING-FCKKKM--LKEAREMLDDIGKRGLAPN 403

Query: 455 KFTFNRVLNG 464
             TFN +++ 
Sbjct: 404 VITFNTLIDA 413


>gi|302763357|ref|XP_002965100.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
 gi|300167333|gb|EFJ33938.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
          Length = 603

 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 203/414 (49%), Gaps = 10/414 (2%)

Query: 81  NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKT 140
            H   AL FF      P      SSF+  +   A   D+  V  L+  MKS  +     T
Sbjct: 110 GHLSDALGFFQSSISEPNV----SSFNILLRGFAARDDFEVVNALLREMKSRGITSNGAT 165

Query: 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VF 199
             +I     +    D+AV  F S+  + C  +L ++  ++D LCK  KVE+A ++F+ + 
Sbjct: 166 HGVILSALCARRDLDKAVSYFNSVSPNKCEPTLFTYTVLVDGLCKAHKVERACDVFEEMI 225

Query: 200 RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
           R  +K D+I+Y+ + +G     R ++A +++  MV RG  P    Y  ++ G  + G+I+
Sbjct: 226 RKGYKPDIIAYSSLIDGLSKAGRVDEARKLVDLMVARGPPPTAVAYTSIVAGLCKCGRIQ 285

Query: 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319
           EA +   EM++R+    V TY+ IV G+  +G++++A  V + M +    P   +Y   I
Sbjct: 286 EAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEKAFAVMEEMADRDCAPDTISYTMFI 345

Query: 320 QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
           + L      E A  VFE MV KG  P+  TY ++I   C  G M  A   +  M     +
Sbjct: 346 EALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVK 405

Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA 439
           PN   Y +++  F  +  +E  LEL++++     LP+  TYN +I+++   KK D+ L  
Sbjct: 406 PNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEAL-- 463

Query: 440 GKLLIEMVDRG--FMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
            +LL EM  R     P   T++ +++GL  +G +  A ++L      G +P  F
Sbjct: 464 -ELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCF 516



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/367 (28%), Positives = 169/367 (46%), Gaps = 10/367 (2%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           SS    +  A R+ + R    LV  M +    PT   +  I       G+   AVK    
Sbjct: 237 SSLIDGLSKAGRVDEARK---LVDLMVARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQE 293

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKR 222
           M     R  +++++ I+       KVEKA+ + +    +  A D ISY +       + R
Sbjct: 294 MRRRRLRPRVDTYSFIVTGYIGMGKVEKAFAVMEEMADRDCAPDTISYTMFIEALYSIGR 353

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
             +A +V + MV++G  P++ TY I++  + + G +  A      M K   + +   YT 
Sbjct: 354 REEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTM 413

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           I+ GF     ++ A  ++  ++  G+LPS  TYN +I  LCK   ++ A+ +  EM  + 
Sbjct: 414 IMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRK 473

Query: 343 --YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
               P+  TY+++I GL   G  ERA + +  M D+   P+  TY  LI+    AG++ R
Sbjct: 474 EELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSR 533

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
            +EL E+M      P+  TY  L+  +       D+  A  LL EM+  G  P +FTF  
Sbjct: 534 AMELLEEMLKAGIFPDDHTYGTLVQILC----RSDVDAAWDLLQEMMRNGHTPNEFTFKA 589

Query: 461 VLNGLLL 467
           V  G  L
Sbjct: 590 VEKGFRL 596


>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
 gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
          Length = 399

 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 105/343 (30%), Positives = 175/343 (51%), Gaps = 10/343 (2%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEH-GCRQSLNSFNTILDLLCKEKKVEKAYNLFKV 198
           T+ ++   +  AG+   A+ +   M +  G   + + +N  +  LCK  KV +A  + K 
Sbjct: 20  TYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKN 79

Query: 199 FR-GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
            + G  K DV+++N +  G C   R ++A +VL EM   G   NL TYN ++ G   AG+
Sbjct: 80  MKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGR 139

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN-GGVLPSVATYN 316
             EA    L M+      D  TY  I+HGF   GEI RA    + M    G  P   TY+
Sbjct: 140 SGEA---VLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYS 196

Query: 317 AMIQVLCKKDSVENAILVFEEMVG-KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
            +I  LCK  ++  A  + +EM+G K    +   +N ++ G C   +++RA E +  M +
Sbjct: 197 ILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLE 256

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
             C P+V TY+ +I   C  G++++G  L EKM S  C P++ TY +L++ +    K+  
Sbjct: 257 HGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLC---KAGK 313

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           ++ A +L+  M++ G  P   T++ V +GL  I    +A ++L
Sbjct: 314 MVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLL 356



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 170/332 (51%), Gaps = 9/332 (2%)

Query: 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
           + PT   +         +GK   A+++  +M +  C+  + +FNT++  LCK  ++++A 
Sbjct: 50  MAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQ 109

Query: 194 NLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
            +  ++ R  F A++++YN + NG     R+ +A+ V++ M      P+  TYN ++ G+
Sbjct: 110 QVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMT---TTPDTQTYNAIIHGF 166

Query: 253 FRAGQIEEAWRFFLEMKKRK-CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN-GGVLP 310
            ++G+I+ A+ F  EMK+R  C  D  TY+ +++G      +++A  +   M+       
Sbjct: 167 CKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCA 226

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           SV  +N ++   CK   ++ A  +   M+  G  P+  TY+ +I GLC  G++++    +
Sbjct: 227 SVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALL 286

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
            +M    C+P+V TY +L+   C AG++     L ++M    C PN  TY+++   +   
Sbjct: 287 EKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLC-- 344

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
            K D L +A  LL  + D+G +     F  +L
Sbjct: 345 -KIDKLDMANDLLTSIRDKGRVTDVVAFETLL 375



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/268 (30%), Positives = 135/268 (50%), Gaps = 9/268 (3%)

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDR-GLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
           D  +Y V+    CL      A+++L+EM  + G+ P  + YN  +    ++G++ EA   
Sbjct: 17  DNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEV 76

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
              MK   C+ DVVT+ T++ G    G +  A+ V D M   G   ++ TYN +I  L  
Sbjct: 77  VKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSS 136

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE-CEPNVQ 383
                 A+LV   M G    P++ TYN +I G C +GE++RA  F+  MK    C P+  
Sbjct: 137 AGRSGEAVLV---MQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTF 193

Query: 384 TYNILIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
           TY+ILI   C +  + +  EL ++M G   C  ++  +N L+       K+ DL  A +L
Sbjct: 194 TYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYC---KAQDLDRAREL 250

Query: 443 LIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
           L  M++ G  P   T++ +++GL   G+
Sbjct: 251 LSSMLEHGCAPDVVTYSTIIDGLCRCGD 278



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 117/229 (51%), Gaps = 3/229 (1%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH-GCRQSLNSFNTILDLLCKEK 187
           M+ ++  P  +T+  I   +  +G+ DRA      M +  GC     +++ +++ LCK  
Sbjct: 147 MQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSS 206

Query: 188 KVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
            + KA  L +  + R    A V+++N + +G+C  +  ++A E+L  M++ G  P++ TY
Sbjct: 207 NLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTY 266

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           + ++ G  R G +++ +    +M  R C+ DVVTYT +V G    G++  A  +   M+ 
Sbjct: 267 STIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLE 326

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
            G  P+  TY+ +   LCK D ++ A  +   +  KG + +   +  ++
Sbjct: 327 DGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRVTDVVAFETLL 375



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 96/206 (46%), Gaps = 8/206 (3%)

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNG-GVLPSVATYNAMIQVLCKKDSVENAILV 334
           D  TY  +V    + GE++ A ++   M    G+ P+ + YN  +  LCK   V  A+ V
Sbjct: 17  DNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEV 76

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
            + M      P+  T+N +I GLC  G ++ A + +  M+      N+ TYN LI     
Sbjct: 77  VKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSS 136

Query: 395 AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR-GFMP 453
           AG     + + + M +    P+  TYN +I       KS ++  A   L EM  R G  P
Sbjct: 137 AGRSGEAVLVMQGMTT---TPDTQTYNAIIHGFC---KSGEIDRAYGFLEEMKQRAGCSP 190

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILR 479
             FT++ ++NGL    N   A E+L+
Sbjct: 191 DTFTYSILINGLCKSSNLRKADELLQ 216



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 8/180 (4%)

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGK-GYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
           TY  +++  C    ++ A+ +  EM  + G  P  + YN  +  LC +G++  A+E V  
Sbjct: 20  TYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKN 79

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           MKD  C+P+V T+N LI   C AG ++   ++ ++M       NL TYN LI+ +    +
Sbjct: 80  MKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGR 139

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL-RLQSRCGRLPRQF 491
           S      G+ ++ M      P   T+N +++G    G    A   L  ++ R G  P  F
Sbjct: 140 S------GEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTF 193



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 3/125 (2%)

Query: 92  ILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149
           +LS    +  +P   ++   ID   R  D    + L+ +M S    P   T+ ++     
Sbjct: 250 LLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLC 309

Query: 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFK-ADVI 208
            AGK   A ++   M E GC  +  +++ + D LCK  K++ A +L    R K +  DV+
Sbjct: 310 KAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRVTDVV 369

Query: 209 SYNVI 213
           ++  +
Sbjct: 370 AFETL 374


>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
           [Oryza sativa Japonica Group]
          Length = 571

 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 182/369 (49%), Gaps = 7/369 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFL-- 162
           +F+  I    R+   R    +   +K+  L P+  T+  + + Y   G A     + +  
Sbjct: 193 TFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLL 252

Query: 163 -SMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLV 220
             M E G   +  +F  +++  CK      A  +F+  + +   A V++YN + +G C  
Sbjct: 253 KEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSE 312

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
            +  + +++++EM D GL+PN  T+  VLKG+ + G + +A  +   M +R  E DVV Y
Sbjct: 313 GKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIY 372

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
             ++  +  +G+++ A  V + M   G+ P+V TYN +I    +     +A  + +EM  
Sbjct: 373 NILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKE 432

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           KG   +  TYNV+I  LC  GE+ +A++ +  M +   EPN  TYN +I+ FCD G I+ 
Sbjct: 433 KGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKS 492

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
             E+  +M       N+ TYN+ I       K D+   A  LL EM+D+  +P   T+  
Sbjct: 493 AYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDE---ANDLLNEMLDKCLVPNGITYET 549

Query: 461 VLNGLLLIG 469
           +  G++  G
Sbjct: 550 IKEGMMEKG 558



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 152/313 (48%), Gaps = 1/313 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M    + PT  TF ++   Y        AV++F  M + G   S+ ++N+++  LC
Sbjct: 251 LLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLC 310

Query: 185 KEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            E KVE+   L +         + I++  +  G+C       A + +  M +R + P++ 
Sbjct: 311 SEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVV 370

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            YNI++  Y R G++E+A      M K+    +V TY  ++ GF   G+ + A  + D M
Sbjct: 371 IYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEM 430

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G+   V TYN +I  LC K  V  A+ + +EM   G  PN  TYN +I+G C  G +
Sbjct: 431 KEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNI 490

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A E   RM+      NV TYN+ I+YFC  G+++   +L  +M     +PN  TY  +
Sbjct: 491 KSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETI 550

Query: 424 ISSMFVRKKSDDL 436
              M  +  + D+
Sbjct: 551 KEGMMEKGYTPDI 563



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 157/326 (48%), Gaps = 7/326 (2%)

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALE 228
           R S +S N +L  L   K+V+ A   F+   R +   D+ ++N + +G C + +  KA +
Sbjct: 153 RPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGD 212

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFR---AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
           V K++   GL P++ TYN ++ GY +   AG +        EM +       VT+  +++
Sbjct: 213 VAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLIN 272

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
           G+        A  VF+ M   G+  SV TYN++I  LC +  VE  + + EEM   G  P
Sbjct: 273 GYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSP 332

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           N  T+  V++G C  G M  A +++  M +   EP+V  YNILI  +   G++E  + + 
Sbjct: 333 NEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVK 392

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           E M      PN+ TYN LI+      +S D   A  LL EM ++G      T+N ++  L
Sbjct: 393 EAMAKKGISPNVTTYNCLITGF---SRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGAL 449

Query: 466 LLIGNQGLAKEILRLQSRCGRLPRQF 491
              G    A ++L   S  G  P   
Sbjct: 450 CCKGEVRKAVKLLDEMSEVGLEPNHL 475


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 108/401 (26%), Positives = 197/401 (49%), Gaps = 13/401 (3%)

Query: 71  LVDQIIKRLWN--HALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYR--TVWTLV 126
           L  ++IK  +N  +  KA     IL  H      P  F +   ++   +  R  +  T++
Sbjct: 12  LCTKLIKGFFNSRNIDKATRVMGILEKH----GKPDVFAYNAVISGFCKANRIESAKTVL 67

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM-HEHGCRQSLNSFNTILDLLCK 185
            RMK     P   T  I+   +   GK D A+K+F  +  ++ C+ +L ++  +++    
Sbjct: 68  DRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAYIL 127

Query: 186 EKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
           E  +++A  L  ++     + D  +YNVI  G C   + ++A E ++ +  RG  P++ T
Sbjct: 128 EGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVIT 187

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           YNI+L+     G+ +E  ++  E+  R CE +VVTY+ ++      G+I+ + N+   M 
Sbjct: 188 YNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMK 247

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
             G+ P    Y+ +I   C++  ++ AI   + M+  G++P+   YN ++  LC  G  +
Sbjct: 248 EKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGD 307

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
            A+E  G++ +  C PNV +YN ++     +G+  R L +  +M S    P++ TYN LI
Sbjct: 308 HAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLI 367

Query: 425 SSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           S +      D+   A  LL +M+   F P   ++  VL GL
Sbjct: 368 SCLCRDGMVDE---AIGLLADMLSGRFQPNIVSYKTVLLGL 405



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 153/293 (52%), Gaps = 4/293 (1%)

Query: 187 KKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
           + ++KA  +  +     K DV +YN + +G+C   R   A  VL  M  +G +P++ T+N
Sbjct: 24  RNIDKATRVMGILEKHGKPDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHN 83

Query: 247 IVLKGYFRAGQIEEAWRFFLE-MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           I++  +   G+I+ A + F E +K   C+  ++TYT ++  + + G I  A  + D M++
Sbjct: 84  IMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLS 143

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G+ P   TYN + + LCK+  V+ A      +  +G  P+  TYN+++R L + G+ + 
Sbjct: 144 RGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDE 203

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
             +++  +    CEPNV TY+ILI   C  G+IE  + L + M      P+   Y+ LI+
Sbjct: 204 GEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIA 263

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           + F R+   D+ +  + L  M+  GF+P    +N ++  L   GN   A EI 
Sbjct: 264 A-FCREGKLDMAI--EFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIF 313



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 141/283 (49%), Gaps = 1/283 (0%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           +  V  + S    P   T+ I+    ++ GK D   K    +   GC  ++ +++ ++  
Sbjct: 170 FEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISS 229

Query: 183 LCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           LC++ K+E++ NL KV + K    D   Y+ +   +C   + + A+E L  M+  G  P+
Sbjct: 230 LCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPD 289

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           +  YN ++    + G  + A   F ++ +  C  +V +Y T++      G+  RA  +  
Sbjct: 290 IVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMIS 349

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M++ G+ P V TYN++I  LC+   V+ AI +  +M+   + PN  +Y  V+ GLC   
Sbjct: 350 QMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLLGLCKAH 409

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
            ++ A+E +  M ++ C+PN  TY +LI     +G   + +EL
Sbjct: 410 RIDDAIEVLAAMIENGCQPNETTYTLLIEGIGFSGSRTQAMEL 452



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 155/353 (43%), Gaps = 37/353 (10%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           +K  +  PT  T+ I+ E Y+  G  D A+K+   M   G      ++N I   LCKE K
Sbjct: 106 LKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGK 165

Query: 189 VEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           V++A+   +    +  K DVI+YN++        + ++  + + E+  RG  PN+ TY+I
Sbjct: 166 VDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSI 225

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++    R G+IEE+      MK++    D   Y  ++  F   G++  A    D M+  G
Sbjct: 226 LISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDG 285

Query: 308 VLP-----------------------------------SVATYNAMIQVLCKKDSVENAI 332
            LP                                   +V++YN M+  L        A+
Sbjct: 286 FLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRAL 345

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
            +  +M+ KG  P+  TYN +I  LC  G ++ A+  +  M     +PN+ +Y  ++   
Sbjct: 346 GMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLLGL 405

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM-FVRKKSDDLLVAGKLLI 444
           C A  I+  +E+   M    C PN  TY +LI  + F   ++  + +A  L I
Sbjct: 406 CKAHRIDDAIEVLAAMIENGCQPNETTYTLLIEGIGFSGSRTQAMELANSLYI 458



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 78/182 (42%), Gaps = 39/182 (21%)

Query: 338 MVGKGYMPNST----------------------------------TYNVVIRGLCHTGEM 363
           MV K Y P+                                     YN VI G C    +
Sbjct: 1   MVAKDYQPDVILCTKLIKGFFNSRNIDKATRVMGILEKHGKPDVFAYNAVISGFCKANRI 60

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK-MGSGVCLPNLDTYNI 422
           E A   + RMK     P+V T+NI+I  FC  G+I+  L++FE+ +    C P L TY I
Sbjct: 61  ESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTI 120

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR-LQ 481
           LI +  +    D+ L   KLL EM+ RG  P  FT+N +  GL   G    A E +R L 
Sbjct: 121 LIEAYILEGGIDEAL---KLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLN 177

Query: 482 SR 483
           SR
Sbjct: 178 SR 179


>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
 gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
 gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
          Length = 578

 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 182/369 (49%), Gaps = 7/369 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFL-- 162
           +F+  I    R+   R    +   +K+  L P+  T+  + + Y   G A     + +  
Sbjct: 193 TFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLL 252

Query: 163 -SMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLV 220
             M E G   +  +F  +++  CK      A  +F+  + +   A V++YN + +G C  
Sbjct: 253 KEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSE 312

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
            +  + +++++EM D GL+PN  T+  VLKG+ + G + +A  +   M +R  E DVV Y
Sbjct: 313 GKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIY 372

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
             ++  +  +G+++ A  V + M   G+ P+V TYN +I    +     +A  + +EM  
Sbjct: 373 NILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKE 432

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           KG   +  TYNV+I  LC  GE+ +A++ +  M +   EPN  TYN +I+ FCD G I+ 
Sbjct: 433 KGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKS 492

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
             E+  +M       N+ TYN+ I       K D+   A  LL EM+D+  +P   T+  
Sbjct: 493 AYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDE---ANDLLNEMLDKCLVPNGITYET 549

Query: 461 VLNGLLLIG 469
           +  G++  G
Sbjct: 550 IKEGMMEKG 558



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 152/313 (48%), Gaps = 1/313 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M    + PT  TF ++   Y        AV++F  M + G   S+ ++N+++  LC
Sbjct: 251 LLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLC 310

Query: 185 KEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            E KVE+   L +         + I++  +  G+C       A + +  M +R + P++ 
Sbjct: 311 SEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVV 370

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            YNI++  Y R G++E+A      M K+    +V TY  ++ GF   G+ + A  + D M
Sbjct: 371 IYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEM 430

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G+   V TYN +I  LC K  V  A+ + +EM   G  PN  TYN +I+G C  G +
Sbjct: 431 KEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNI 490

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A E   RM+      NV TYN+ I+YFC  G+++   +L  +M     +PN  TY  +
Sbjct: 491 KSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETI 550

Query: 424 ISSMFVRKKSDDL 436
              M  +  + D+
Sbjct: 551 KEGMMEKGYTPDI 563



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 157/326 (48%), Gaps = 7/326 (2%)

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALE 228
           R S +S N +L  L   K+V+ A   F+   R +   D+ ++N + +G C + +  KA +
Sbjct: 153 RPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGD 212

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFR---AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
           V K++   GL P++ TYN ++ GY +   AG +        EM +       VT+  +++
Sbjct: 213 VAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLIN 272

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
           G+        A  VF+ M   G+  SV TYN++I  LC +  VE  + + EEM   G  P
Sbjct: 273 GYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSP 332

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           N  T+  V++G C  G M  A +++  M +   EP+V  YNILI  +   G++E  + + 
Sbjct: 333 NEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVK 392

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           E M      PN+ TYN LI+      +S D   A  LL EM ++G      T+N ++  L
Sbjct: 393 EAMAKKGISPNVTTYNCLITGF---SRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGAL 449

Query: 466 LLIGNQGLAKEILRLQSRCGRLPRQF 491
              G    A ++L   S  G  P   
Sbjct: 450 CCKGEVRKAVKLLDEMSEVGLEPNHL 475


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 170/336 (50%), Gaps = 4/336 (1%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           ++  + E    +G+ D     +  M   GC  +  ++  +L  LC+ ++ E+A ++F+  
Sbjct: 19  SYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGM 78

Query: 200 RGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
             +    +V SY+++  G C  ++ ++A E+L EM+D G  PN+ TY  +L G  + G++
Sbjct: 79  AAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKL 138

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           +EA   F  M  R C  D V Y  ++ GF   G++  A  +F+ M+  G +P+V TYN++
Sbjct: 139 KEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSL 198

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           +    +K        +F++M+ +G +PN  T+N ++ G C  G+M  A      M+   C
Sbjct: 199 LSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGC 258

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
            P+V +YN LIR  C  G+      L  +M      P++ +YNILI       KS  L  
Sbjct: 259 PPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGY---SKSGALDH 315

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           A KL  E+   G  P  F+++ +++ L   G  G A
Sbjct: 316 AIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAA 351



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 183/368 (49%), Gaps = 4/368 (1%)

Query: 87  LHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAE 146
           + FF        Y H   S+++ +++ A+      V+   + M +    P   T+  +  
Sbjct: 1   MAFFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLR 60

Query: 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKA 205
               A + + A  +F  M   GC  ++ S++ ++  LC+ +KV++A  L  ++  G  + 
Sbjct: 61  SLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQP 120

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           +V++Y  + +G C + +  +A+++   MV RG  P+   YN+++ G+ + G + EA+R F
Sbjct: 121 NVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLF 180

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
            EM ++ C   V TY +++ GF   GE  R +++F  M+  G +P++ T+N ++   CK 
Sbjct: 181 EEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKM 240

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
             +  A  +F EM   G  P+  +YN +IRG+C  G+   A   +  M      P++ +Y
Sbjct: 241 GDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSY 300

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           NILI  +  +G ++  ++LF ++      P+  +Y+ +I  +    K     V  K   +
Sbjct: 301 NILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFK---D 357

Query: 446 MVDRGFMP 453
           M+  G  P
Sbjct: 358 MIANGSAP 365



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 170/355 (47%), Gaps = 6/355 (1%)

Query: 102 SPSSFDHAIDLAARLRDYRT--VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           SP+ F ++I +A   R  +      L++ M      P   T+  +       GK   AV 
Sbjct: 84  SPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVD 143

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWC 218
           +F  M   GC      +N ++D   K+  + +AY LF+ +        V +YN + +G+ 
Sbjct: 144 LFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFS 203

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
                 +   + K+M+ +G  PN+ T+N +L G+ + G + EA R FLEM+   C  DVV
Sbjct: 204 RKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVV 263

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           +Y T++ G    G+   A+ +   M+  GV P + +YN +I    K  ++++AI +F E+
Sbjct: 264 SYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEI 323

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
              G  P++ +Y+ +I  LC  G++  A      M  +   P+      L+   C    +
Sbjct: 324 PKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERL 383

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
               ELF+ M    C+P +  YN+L+  +   K+SDD+    ++  E+ +RGF P
Sbjct: 384 TESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVC---EIFHELTERGFSP 435



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 135/281 (48%), Gaps = 3/281 (1%)

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           +SYN +        R +       +M+  G  PN  TY  +L+   +A + EEA   F  
Sbjct: 18  LSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRG 77

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M  + C  +V +Y+ ++ G     ++  A  + + M++GG  P+V TY +++  LCK   
Sbjct: 78  MAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGK 137

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
           ++ A+ +F  MV +G  P+   YNV+I G    G+M  A      M +  C P V TYN 
Sbjct: 138 LKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNS 197

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           L+  F   GE  R   LF+ M    C+PN+ T+N L+       K  D++ A +L +EM 
Sbjct: 198 LLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFC---KMGDMVEAHRLFLEMR 254

Query: 448 DRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             G  P   ++N ++ G+   G    A+ +LR   R G  P
Sbjct: 255 SLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGP 295



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 119/232 (51%), Gaps = 3/232 (1%)

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
           N    +YN +L+   ++G+ +  +  + +M    C  +  TY  ++         + AR+
Sbjct: 14  NHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARS 73

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
           VF GM   G  P+V +Y+ +I  LC+   V+ A  +  EM+  G+ PN  TY  ++ GLC
Sbjct: 74  VFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLC 133

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLD 418
             G+++ A++   RM    C P+   YN+LI  F   G++     LFE+M    C+P + 
Sbjct: 134 KMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVF 193

Query: 419 TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
           TYN L+S  F RK   +      L  +M+ +G +P  FTFN +L+G   +G+
Sbjct: 194 TYNSLLSG-FSRK--GEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGD 242



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 107/214 (50%), Gaps = 3/214 (1%)

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           ++Y  ++      G        ++ M+  G +P+  TY  +++ LC+    E A  VF  
Sbjct: 18  LSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRG 77

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M  +G  PN  +Y+++I GLC   +++ A E +  M D   +PNV TY  L+   C  G+
Sbjct: 78  MAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGK 137

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           ++  ++LF +M    C P+   YN+LI       K  D+  A +L  EM+++G +P  FT
Sbjct: 138 LKEAVDLFSRMVYRGCPPDGVVYNVLIDGF---SKKGDMGEAYRLFEEMLEKGCIPTVFT 194

Query: 458 FNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           +N +L+G    G  G  + + +   R G +P  F
Sbjct: 195 YNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIF 228



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 116/254 (45%), Gaps = 1/254 (0%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
           +R  ++  V +L   M      P   TF  + + +   G    A ++FL M   GC   +
Sbjct: 203 SRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDV 262

Query: 174 NSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
            S+NT++  +C + K  +A  L + + R     D++SYN++ +G+      + A+++  E
Sbjct: 263 VSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYE 322

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           +   GL P+  +Y+ ++    RAG++  A+  F +M       D      +V G      
Sbjct: 323 IPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGER 382

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           +  +  +F  MV    +P +  YN ++  LCK    ++   +F E+  +G+ P+     V
Sbjct: 383 LTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKV 442

Query: 353 VIRGLCHTGEMERA 366
           ++  L  + + + A
Sbjct: 443 ILETLRRSDDKDAA 456



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 68/141 (48%), Gaps = 6/141 (4%)

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
           Y   + +YN ++  L  +G  +        M    C PN  TY  L+R  C A   E   
Sbjct: 13  YNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEAR 72

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
            +F  M +  C PN+ +Y+ILI+ +   +K D+   A +LL EM+D G  P   T+  +L
Sbjct: 73  SVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDE---AAELLNEMIDGGHQPNVVTYGSLL 129

Query: 463 NGLLLIGNQGLAKEILRLQSR 483
           +GL  +G     KE + L SR
Sbjct: 130 SGLCKMGK---LKEAVDLFSR 147


>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
 gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
          Length = 399

 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 105/343 (30%), Positives = 175/343 (51%), Gaps = 10/343 (2%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEH-GCRQSLNSFNTILDLLCKEKKVEKAYNLFKV 198
           T+ ++   +  AG+   A+ +   M +  G   + + +N  +  LCK  KV +A  + K 
Sbjct: 20  TYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKN 79

Query: 199 FR-GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
            + G  K DV+++N +  G C   R ++A +VL EM   G   NL TYN ++ G   AG+
Sbjct: 80  MKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGR 139

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN-GGVLPSVATYN 316
             EA    L M+      D  TY  I+HGF   GEI RA    + M    G  P   TY+
Sbjct: 140 SGEA---VLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYS 196

Query: 317 AMIQVLCKKDSVENAILVFEEMVG-KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
            +I  LCK  ++  A  + +EM+G K    +   +N ++ G C   +++RA E +  M +
Sbjct: 197 ILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLE 256

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
             C P+V TY+ +I   C  G++++G  L EKM S  C P++ TY +L++ +    K+  
Sbjct: 257 HGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLC---KAGK 313

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           ++ A +L+  M++ G  P   T++ V +GL  I    +A ++L
Sbjct: 314 MVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLL 356



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 170/332 (51%), Gaps = 9/332 (2%)

Query: 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
           + PT   +         +GK   A+++  +M +  C+  + +FNT++  LCK  ++++A 
Sbjct: 50  MAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQ 109

Query: 194 NLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
            +  ++ R  F A++++YN + NG     R+ +A+ V++ M      P+  TYN ++ G+
Sbjct: 110 QVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMT---TTPDTQTYNAIIHGF 166

Query: 253 FRAGQIEEAWRFFLEMKKRK-CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN-GGVLP 310
            ++G+I+ A+ F  EMK+R  C  D  TY+ +++G      +++A  +   M+       
Sbjct: 167 CKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCA 226

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           SV  +N ++   CK   ++ A  +   M+  G  P+  TY+ +I GLC  G++++    +
Sbjct: 227 SVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALL 286

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
            +M    C+P+V TY +L+   C AG++     L ++M    C PN  TY+++   +   
Sbjct: 287 EKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLC-- 344

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
            K D L +A  LL  + D+G +     F  +L
Sbjct: 345 -KIDKLDMANDLLTSIRDKGRITDVVAFEALL 375



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/268 (30%), Positives = 135/268 (50%), Gaps = 9/268 (3%)

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDR-GLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
           D  +Y V+    CL      A+++L+EM  + G+ P  + YN  +    ++G++ EA   
Sbjct: 17  DNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEV 76

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
              MK   C+ DVVT+ T++ G    G +  A+ V D M   G   ++ TYN +I  L  
Sbjct: 77  VKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSS 136

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE-CEPNVQ 383
                 A+LV   M G    P++ TYN +I G C +GE++RA  F+  MK    C P+  
Sbjct: 137 AGRSGEAVLV---MQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTF 193

Query: 384 TYNILIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
           TY+ILI   C +  + +  EL ++M G   C  ++  +N L+       K+ DL  A +L
Sbjct: 194 TYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYC---KAQDLDRAREL 250

Query: 443 LIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
           L  M++ G  P   T++ +++GL   G+
Sbjct: 251 LSSMLEHGCAPDVVTYSTIIDGLCRCGD 278



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 8/180 (4%)

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGK-GYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
           TY  +++  C    ++ A+ +  EM  + G  P  + YN  +  LC +G++  A+E V  
Sbjct: 20  TYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKN 79

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           MKD  C+P+V T+N LI   C AG ++   ++ ++M       NL TYN LI+ +    +
Sbjct: 80  MKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGR 139

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL-RLQSRCGRLPRQF 491
           S      G+ ++ M      P   T+N +++G    G    A   L  ++ R G  P  F
Sbjct: 140 S------GEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTF 193


>gi|356561933|ref|XP_003549231.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g62470, mitochondrial-like [Glycine max]
          Length = 510

 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/435 (24%), Positives = 213/435 (48%), Gaps = 6/435 (1%)

Query: 54  RTLTQTLHCPSLHWTPQLVDQIIKRLWNHALK-ALHFFNILSYHPTYAHSPSSFDHAIDL 112
           R +   L    +  +  LV  +++R + HA K A  FF      P +AH   +++  + +
Sbjct: 51  RNMEVVLDECGVRLSHDLVVDVLQR-FKHARKPAFRFFCXAGKRPGFAHDSRTYNFMMCV 109

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
             R R + T+   +  M    L  T +TF+I  + +  A +  + V IF  M ++G +  
Sbjct: 110 LGRTRQFETMVAKLEEMGEKGL-LTMETFSIAIKAFAEAKQRKKEVGIFDLMKKYGFKVG 168

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
           ++  N +LD L   K  ++A  +F+  + +F   + +Y ++ +GWC +K   +A  V  E
Sbjct: 169 VDVINFLLDSLSTAKLGKEAQAVFEKLKDRFTPSLQTYTILLSGWCRLKNLLEAGRVWNE 228

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M+DRG NP++  +N++L+G  +  +  +A + F  MK +    +V +YT ++  F     
Sbjct: 229 MIDRGFNPDIVAHNVMLEGLLKCKKKSDAIKLFEIMKAKGPSPNVRSYTIMIQDFCKQKL 288

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           +  A   FD MV+ G  P  A Y  +I    ++  ++    + +EM  +G  P+  TYN 
Sbjct: 289 MGEAIEYFDVMVDRGCQPDAALYTCLITGFGRQKKMDMVYSLLKEMRERGCPPDGRTYNA 348

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           +I+ +      + A+    +M     +P + TYN++++ +      E G E++++M    
Sbjct: 349 LIKLMTSQHMPDDAVRIYKKMIQSGIKPTIHTYNMIMKSYFVTKNYEMGHEIWDEMHPKG 408

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
           C P+ ++Y + I  +  + +S +   A K L EM+++G    K  +N+  + +   GN  
Sbjct: 409 CCPDDNSYIVYIGGLIRQDRSGE---ACKYLEEMLEKGMKALKLDYNKFASDISKTGNAV 465

Query: 473 LAKEILRLQSRCGRL 487
           + +E+ R  +  G+ 
Sbjct: 466 ILEELARKMNFVGKF 480



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 89/205 (43%), Gaps = 10/205 (4%)

Query: 289 VVGEIKRARN-VFDGMVNGGVLPSVA----TYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           V+   K AR   F      G  P  A    TYN M+ VL +    E  +   EEM  KG 
Sbjct: 72  VLQRFKHARKPAFRFFCXAGKRPGFAHDSRTYNFMMCVLGRTRQFETMVAKLEEMGEKGL 131

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
           +    T+++ I+      + ++ +     MK    +  V   N L+     A   +    
Sbjct: 132 L-TMETFSIAIKAFAEAKQRKKEVGIFDLMKKYGFKVGVDVINFLLDSLSTAKLGKEAQA 190

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           +FEK+      P+L TY IL+S  + R K  +LL AG++  EM+DRGF P     N +L 
Sbjct: 191 VFEKLKDRFT-PSLQTYTILLSG-WCRLK--NLLEAGRVWNEMIDRGFNPDIVAHNVMLE 246

Query: 464 GLLLIGNQGLAKEILRLQSRCGRLP 488
           GLL    +  A ++  +    G  P
Sbjct: 247 GLLKCKKKSDAIKLFEIMKAKGPSP 271


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 100/346 (28%), Positives = 179/346 (51%), Gaps = 7/346 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           PT  T+ I+ E  +  G  D A+K+   M   G      ++N I+  +CKE  V+KA+ L
Sbjct: 206 PTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFEL 265

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            +    +  K D+I+YN++        + ++  +++ EM+  G  PN+ T++I++    R
Sbjct: 266 LRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCR 325

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G++EEA      MK++  + D   Y  ++ GF   G +  A    + M++ G LP +  
Sbjct: 326 DGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVN 385

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN ++  LC+    + A+ VFE++   G  PN ++YN +   L  +G+  RALE + ++ 
Sbjct: 386 YNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLL 445

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
           +   +P+  TYN LI   C  G ++  +EL   M SG   PN+ +YNI++  +    +++
Sbjct: 446 NQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVNRAN 505

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           D   A ++L  M ++G  P + T+  ++ G   IG  GL  E + L
Sbjct: 506 D---AIEVLAAMTEKGCQPNETTYILLIEG---IGFSGLRAEAMEL 545



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 182/367 (49%), Gaps = 4/367 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++ RMKS    P   T+ I+   + S GK D A++IF  + +  C  ++ ++  +++   
Sbjct: 160 VLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEATI 219

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            +  ++ A  L      K  + D ++YN I  G C     +KA E+L+ +  RG  P++ 
Sbjct: 220 LDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDII 279

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYNI+L+     G+  E  +   EM    C+ +VVT++ ++      G+++ A N+   M
Sbjct: 280 TYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSM 339

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G+ P    Y+ +I   C++  ++ A    E M+  G +P+   YN ++ GLC TG+ 
Sbjct: 340 KEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKA 399

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           ++ALE   ++ +  C PNV +YN L      +G+  R LE+  K+ +    P+  TYN L
Sbjct: 400 DQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSL 459

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           IS +      D+   A +LL++M    + P   ++N +L GL  +     A E+L   + 
Sbjct: 460 ISCLCRDGMVDE---AIELLVDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTE 516

Query: 484 CGRLPRQ 490
            G  P +
Sbjct: 517 KGCQPNE 523



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 175/332 (52%), Gaps = 4/332 (1%)

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKAD 206
           ++ A + + A ++   M   G    + ++N ++   C   K++ A  +F+ + +   +  
Sbjct: 148 FIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPT 207

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           VI+Y ++     L    + A+++L EM+ +GL P+  TYN +++G  +   +++A+    
Sbjct: 208 VITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLR 267

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
            +  R C+ D++TY  ++      G+      +   M++ G  P+V T++ +I  LC+  
Sbjct: 268 SLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDG 327

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            VE A+ +   M  KG  P++  Y+ +I G C  G ++ A EF+  M  D C P++  YN
Sbjct: 328 KVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYN 387

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            ++   C  G+ ++ LE+FEK+    C PN+ +YN L S+++    S D   A ++++++
Sbjct: 388 TIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALW---SSGDRYRALEMILKL 444

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           +++G  P + T+N +++ L   G    A E+L
Sbjct: 445 LNQGIDPDEITYNSLISCLCRDGMVDEAIELL 476



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 161/342 (47%), Gaps = 3/342 (0%)

Query: 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKAD 206
           R   AGK + ++     M + G    +     ++      + + KA  + ++     K D
Sbjct: 78  RSCRAGKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVMEILERYGKPD 137

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           V +YN + +G+    +   A  VL  M  RG  P++ TYNI++  +   G+++ A   F 
Sbjct: 138 VFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFE 197

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           E+ K  CE  V+TYT ++    + G I  A  + D M++ G+ P   TYNA+I+ +CK+ 
Sbjct: 198 ELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEM 257

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            V+ A  +   +  +G  P+  TYN+++R L   G+     + +  M    C+PNV T++
Sbjct: 258 MVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHS 317

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
           ILI   C  G++E  + L   M      P+   Y+ LI+  F R+   DL  A + L  M
Sbjct: 318 ILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAG-FCREGRLDL--ATEFLEYM 374

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           +  G +P    +N ++ GL   G    A E+       G  P
Sbjct: 375 ISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPP 416



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 141/283 (49%), Gaps = 1/283 (0%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           + L+  + S    P   T+ I+    +S GK     K+   M   GC+ ++ + + ++  
Sbjct: 263 FELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGT 322

Query: 183 LCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           LC++ KVE+A NL +  + K  K D   Y+ +  G+C   R + A E L+ M+  G  P+
Sbjct: 323 LCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPD 382

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           +  YN ++ G  R G+ ++A   F ++ +  C  +V +Y T+       G+  RA  +  
Sbjct: 383 IVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMIL 442

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            ++N G+ P   TYN++I  LC+   V+ AI +  +M    Y PN  +YN+++ GLC   
Sbjct: 443 KLLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVN 502

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
               A+E +  M +  C+PN  TY +LI     +G     +EL
Sbjct: 503 RANDAIEVLAAMTEKGCQPNETTYILLIEGIGFSGLRAEAMEL 545



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 124/259 (47%), Gaps = 5/259 (1%)

Query: 120 RTVWT----LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS 175
           R  W+    L+  M S+   P   T +I+       GK + AV +  SM E G +     
Sbjct: 291 RGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYC 350

Query: 176 FNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           ++ ++   C+E +++ A    + +       D+++YN I  G C   + ++ALEV +++ 
Sbjct: 351 YDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLD 410

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
           + G  PN+++YN +    + +G    A    L++  +  + D +TY +++      G + 
Sbjct: 411 EVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVD 470

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
            A  +   M +G   P+V +YN ++  LCK +   +AI V   M  KG  PN TTY ++I
Sbjct: 471 EAIELLVDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTYILLI 530

Query: 355 RGLCHTGEMERALEFVGRM 373
            G+  +G    A+E    +
Sbjct: 531 EGIGFSGLRAEAMELANSL 549


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 99/384 (25%), Positives = 193/384 (50%), Gaps = 7/384 (1%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           KA   +++   H     SP S  ++  I+   + RD++  + L+  M+   + P    + 
Sbjct: 13  KAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYN 72

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRG 201
            I +     G+ D A+  +  M  H C  S+ ++  ++D LCK  ++  A  + + +   
Sbjct: 73  TIIKGLCDNGRVDSALVHYRDMQRH-CAPSVITYTILVDALCKSARISDASLILEDMIEA 131

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
               +V++YN + NG+C +   ++A+ +  +M++   +P++ TYNI++ GY +  + ++ 
Sbjct: 132 GCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDG 191

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
            +   EM K  CE + +TY T++      G+   A N+   M+     PS  T+N MI +
Sbjct: 192 AKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDM 251

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
            CK   ++ A  +F+ M  +G +P+  TYN++I G C    ++ A + + RM +  C P+
Sbjct: 252 FCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPD 311

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
           V TYN ++   C A +++   E++E + +G    ++ T + LI  +   ++ DD   A K
Sbjct: 312 VVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDD---AEK 368

Query: 442 LLIEMVDRGFMPRKFTFNRVLNGL 465
           LL EM   G  P    +  +++G 
Sbjct: 369 LLREMERNGSAPDVVAYTILIHGF 392



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 175/354 (49%), Gaps = 13/354 (3%)

Query: 61  HC-PSLHWTPQLVDQIIK--RLWNHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAAR 115
           HC PS+     LVD + K  R+ + +L       IL        +P+  +++  I+   +
Sbjct: 97  HCAPSVITYTILVDALCKSARISDASL-------ILEDMIEAGCAPNVVTYNTLINGFCK 149

Query: 116 LRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS 175
           L +      L ++M   S  P   T+ I+ + Y    +     K+   M ++GC  +  +
Sbjct: 150 LGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFIT 209

Query: 176 FNTILDLLCKEKKVEKAYNLFKV-FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           +NT++D L K  K   A+NL ++  R   K    ++N++ + +C V + + A E+ + M 
Sbjct: 210 YNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMT 269

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
           DRG  P++ TYNI++ G  RA +I++A +    M +  C  DVVTY +IV G     ++ 
Sbjct: 270 DRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVD 329

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
            A  V++ + NGG    V T + +I  LCK   +++A  +  EM   G  P+   Y ++I
Sbjct: 330 EAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILI 389

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            G C   +++++L F   M D  C P V TY+I+I   C +  +  G  L + M
Sbjct: 390 HGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTM 443



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/325 (29%), Positives = 156/325 (48%), Gaps = 40/325 (12%)

Query: 177 NTILDLLCKEKKVEKAYNLFKV-FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235
           N +L    ++KK ++AY+LFK    G    D I+Y+ + NG+C  +   +A  +L EM  
Sbjct: 2   NCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK 61

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
           RG+ P+   YN ++KG    G+++ A   + +M +R C   V+TYT +V        I  
Sbjct: 62  RGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDM-QRHCAPSVITYTILVDALCKSARISD 120

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
           A  + + M+  G  P+V TYN +I   CK  +++ A+++F +M+     P+  TYN++I 
Sbjct: 121 ASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILID 180

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTY------------------------------ 385
           G C     +   + +  M    CEPN  TY                              
Sbjct: 181 GYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKP 240

Query: 386 -----NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAG 440
                N++I  FC  G+++   ELF+ M    CLP++ TYNI+IS      + DD   A 
Sbjct: 241 SHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDD---AR 297

Query: 441 KLLIEMVDRGFMPRKFTFNRVLNGL 465
           +LL  M + G  P   T+N +++GL
Sbjct: 298 QLLERMTEAGCPPDVVTYNSIVSGL 322



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 168/368 (45%), Gaps = 40/368 (10%)

Query: 120 RTVWTLVH-RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           R    LVH R       P+  T+ I+ +    + +   A  I   M E GC  ++ ++NT
Sbjct: 83  RVDSALVHYRDMQRHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNT 142

Query: 179 ILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           +++  CK   +++A  LF ++       DV +YN++ +G+C  +R     ++L+EMV  G
Sbjct: 143 LINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYG 202

Query: 238 LNPNLTTYNIVLKG-----------------------------------YFRAGQIEEAW 262
             PN  TYN ++                                     + + GQ++ A+
Sbjct: 203 CEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAY 262

Query: 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322
             F  M  R C  D+ TY  ++ G      I  AR + + M   G  P V TYN+++  L
Sbjct: 263 ELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGL 322

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
           CK   V+ A  V+E +   GY  +  T + +I GLC +  ++ A + +  M+ +   P+V
Sbjct: 323 CKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDV 382

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
             Y ILI  FC A ++++ L  F +M    C+P + TY+I+I  +    +  D      L
Sbjct: 383 VAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRD---GCML 439

Query: 443 LIEMVDRG 450
           L  M++RG
Sbjct: 440 LKTMLERG 447



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 87/278 (31%), Positives = 139/278 (50%), Gaps = 4/278 (1%)

Query: 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
           N + + +   K+  +A ++ K  +    +P+  TY+ ++ G+ +A   ++A+R   EM+K
Sbjct: 2   NCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK 61

Query: 271 RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
           R        Y TI+ G    G +  A   +  M      PSV TY  ++  LCK   + +
Sbjct: 62  RGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDM-QRHCAPSVITYTILVDALCKSARISD 120

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           A L+ E+M+  G  PN  TYN +I G C  G M+ A+    +M ++ C P+V TYNILI 
Sbjct: 121 ASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILID 180

Query: 391 YFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450
            +C     + G +L ++M    C PN  TYN L+ S+    KS   + A  L   M+ R 
Sbjct: 181 GYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLV---KSGKYIDAFNLAQMMLRRD 237

Query: 451 FMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             P  FTFN +++    +G   LA E+ +L +  G LP
Sbjct: 238 CKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLP 275


>gi|297819626|ref|XP_002877696.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323534|gb|EFH53955.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1188

 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/426 (26%), Positives = 198/426 (46%), Gaps = 7/426 (1%)

Query: 56  LTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAAR 115
           L  +L+   +   P L+ +++ R  +       FF   +  P Y HS       + + ++
Sbjct: 87  LELSLNESGIDLRPGLIVRVLSRCGDAGNLGYRFFLWATKQPGYCHSYEVCKSMVKILSK 146

Query: 116 LRDYRTVWTLVHRMKSLSLGPTQ-KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           +R +  VW L+  M+  +    + + F ++  R+ SA    +AV++   M ++G      
Sbjct: 147 MRQFGAVWGLIEEMRKENPELIEPELFVVLIRRFASANMVKKAVEVLDEMPKYGFEPDEY 206

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
            F  +LD LCK   V+ A  +F+  R K   ++  +  +  GWC   +  +A EVL +M 
Sbjct: 207 VFGCLLDALCKNGSVKDASKVFEDMREKIPPNLRYFTSLLYGWCREGKLMEAKEVLVQMK 266

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF-GVVGEI 293
           + GL P++  +  +L GY  AG++ +A+    +M+KR  E +   YT ++         +
Sbjct: 267 EAGLEPDIVVFTNLLSGYAHAGKMADAYDLLNDMRKRGYEPNANCYTVLIQALCRTEKRM 326

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
             A  VF  M   G    + TY A+I   CK   ++    V ++M  KG MP+  TY  +
Sbjct: 327 DEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQI 386

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           +       + E  LE + +MK   C P++  YN++IR  C+  E++  + L+ +M +   
Sbjct: 387 LVAHEKKEQFEECLELIEKMKQIGCHPDLLIYNVVIRLACNFREVKEAVRLWNEMEANGL 446

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM--PRKFTFNRVLNGLLLIGNQ 471
            P  D + I+I+    +     L+ A     EMV RG    P+  T   +LN LL     
Sbjct: 447 SPGADMFVIMINGFTSQGY---LIEACSHFKEMVSRGIFSAPQYGTLKSLLNTLLRDDKL 503

Query: 472 GLAKEI 477
            +AK++
Sbjct: 504 EMAKDV 509



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 64/306 (20%), Positives = 117/306 (38%), Gaps = 76/306 (24%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK-E 186
           +MK   L P    F  +   Y  AGK   A  +   M + G   + N +  ++  LC+ E
Sbjct: 264 QMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLLNDMRKRGYEPNANCYTVLIQALCRTE 323

Query: 187 KKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
           K++++A  +F ++ R   +AD+++Y  + +G+C     +K   VL +M  +G+ P+  TY
Sbjct: 324 KRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTY 383

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV--------------------- 284
             +L  + +  Q EE      +MK+  C  D++ Y  ++                     
Sbjct: 384 MQILVAHEKKEQFEECLELIEKMKQIGCHPDLLIYNVVIRLACNFREVKEAVRLWNEMEA 443

Query: 285 --------------HGFGVVGEIKRARNVFDGMVNGGVL--PSVATYNAMIQVLCKKDSV 328
                         +GF   G +  A + F  MV+ G+   P   T  +++  L + D +
Sbjct: 444 NGLSPGADMFVIMINGFTSQGYLIEACSHFKEMVSRGIFSAPQYGTLKSLLNTLLRDDKL 503

Query: 329 ENAILVFE-------------------------------------EMVGKGYMPNSTTYN 351
           E A  V+                                      +M+    MP   TY 
Sbjct: 504 EMAKDVWSCISNKTSSCELNVSAWTIWIHALFAKGHVKEACSYCLDMMEMDLMPQPNTYV 563

Query: 352 VVIRGL 357
            +++GL
Sbjct: 564 KLMKGL 569



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 91/207 (43%), Gaps = 5/207 (2%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           ++++  M+   + P+Q T+  I   +    + +  +++   M + GC   L  +N ++ L
Sbjct: 365 YSVLDDMRKKGVMPSQVTYMQILVAHEKKEQFEECLELIEKMKQIGCHPDLLIYNVVIRL 424

Query: 183 LCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL--N 239
            C  ++V++A  L+              + ++ NG+       +A    KEMV RG+   
Sbjct: 425 ACNFREVKEAVRLWNEMEANGLSPGADMFVIMINGFTSQGYLIEACSHFKEMVSRGIFSA 484

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFF--LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
           P   T   +L    R  ++E A   +  +  K   CE++V  +T  +H     G +K A 
Sbjct: 485 PQYGTLKSLLNTLLRDDKLEMAKDVWSCISNKTSSCELNVSAWTIWIHALFAKGHVKEAC 544

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCK 324
           +    M+   ++P   TY  +++ L K
Sbjct: 545 SYCLDMMEMDLMPQPNTYVKLMKGLNK 571


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 115/411 (27%), Positives = 190/411 (46%), Gaps = 42/411 (10%)

Query: 117 RDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG--CRQSLN 174
           R    V  L+HRM  LS  P   ++  + +      ++  A+ +   M + G  C   + 
Sbjct: 174 RTDEAVDVLLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVV 233

Query: 175 SFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           SFNT++    K+ +V KA NLF ++ +     DV +YN I +  C  +  +KA  VL++M
Sbjct: 234 SFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQM 293

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM------------------------K 269
           VD+G+ P+  TYN ++ GY  +G  +E+ + F +M                         
Sbjct: 294 VDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRS 353

Query: 270 KRKCEI-----------DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           K   EI           D+V+Y+ ++HG+   G      N+F  M + G++ +    N +
Sbjct: 354 KDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINIL 413

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           I    K+  ++ A+LVF EM G+G  PN  TY+ +I   C  G +  A+E   +M     
Sbjct: 414 ISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGI 473

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELF-EKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
           EPN   Y+ LI  FC  G++ +  E   E M  G+  PN+  ++ +I S+ +  +  D  
Sbjct: 474 EPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQ 533

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
               L+I + DR   P   TFN +++G  L+G    A  +L      G  P
Sbjct: 534 DVFNLVIHIGDR---PTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEP 581



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 109/426 (25%), Positives = 190/426 (44%), Gaps = 56/426 (13%)

Query: 116 LRDYRTVWTLVHRMKSLSLGPT---------QKTFAIIAERYVS----AGKADRAVKIFL 162
           +R Y  +     R +   LGP           KT  I A  ++     A + D AV + L
Sbjct: 124 VRTYGILMDCCCRARRPDLGPAFVARLLRAGLKTGTIQATTFLKCLCHAKRTDEAVDVLL 183

Query: 163 S-MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR---GKFKADVISYNVIANGWC 218
             M E  C     S+NT++  LC + + ++A ++ +      G+   DV+S+N + +G+ 
Sbjct: 184 HRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFF 243

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
                +KA  +  EMV +G+ P++ TYN ++    +A  +++A     +M  +  E D V
Sbjct: 244 KQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGV 303

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TY  I+HG+   G  K +  +F  M + G++P   T+++ +  LCK    ++A  +F+ M
Sbjct: 304 TYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYM 363

Query: 339 VGKGYMPNSTTYNVVIRGL------------------------CHT-----------GEM 363
             KG+MP+  +Y++++ G                         CH            G M
Sbjct: 364 TTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMM 423

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A+     M+     PNV TY+ LI  FC  G +   +E F +M S    PN   Y+ L
Sbjct: 424 DEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSL 483

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGF-MPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           I    +     DL+ A + + EM+ +G   P    F+ +++ L + G    A+++  L  
Sbjct: 484 IHGFCMH---GDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVI 540

Query: 483 RCGRLP 488
             G  P
Sbjct: 541 HIGDRP 546



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 176/376 (46%), Gaps = 5/376 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  +D   + R       ++ +M    + P   T+  I   Y  +G    + K+F  M
Sbjct: 269 TYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKM 328

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
              G      +F++ +  LCK  + + A  +F+    K    D++SY+++ +G+    R 
Sbjct: 329 TSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRF 388

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
                +   M D+G+  N    NI++  + + G ++EA   F EM+ +    +VVTY+T+
Sbjct: 389 ADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTL 448

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG- 342
           +  F  +G +  A   F  M++ G+ P+ A Y+++I   C    +  A     EM+ KG 
Sbjct: 449 ISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGL 508

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
           + PN   ++ +I  LC  G +  A +    +      P + T+N LI  +C  G++E+  
Sbjct: 509 HRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAF 568

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
            + + M S    P++ T N L+S      K DD L+   L  EM+ +   P   T+N VL
Sbjct: 569 GVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLI---LFREMLHKKVKPTTVTYNIVL 625

Query: 463 NGLLLIGNQGLAKEIL 478
           +GLL  G    AK++ 
Sbjct: 626 DGLLRAGRTSAAKKMF 641



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 149/315 (47%), Gaps = 5/315 (1%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC-RQSLNSFNTILDLLCKE 186
           +M S+ + P    +  +   +   G   +A +    M   G  R ++  F++I+  LC E
Sbjct: 467 QMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIE 526

Query: 187 KKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
            +V  A ++F  V     +  ++++N + +G+CLV +  KA  VL  MV  G+ P++ T 
Sbjct: 527 GRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTN 586

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           N ++ GY ++G+I++    F EM  +K +   VTY  ++ G    G    A+ +F  M++
Sbjct: 587 NTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMID 646

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G    + TY  +++ LC+ D  + AI +F ++       + T  N +I  L      E 
Sbjct: 647 SGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTMINALYKVRRREE 706

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           A +    +      PNV TY ++IR     G +E    +F  M    C P+    N +I 
Sbjct: 707 ANDLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDII- 765

Query: 426 SMFVRKKSDDLLVAG 440
            M ++K   D++ AG
Sbjct: 766 RMLLQK--GDIVKAG 778



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 155/316 (49%), Gaps = 16/316 (5%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLG--PTQKTFA 142
           K LH  NI+ +        SS  H++ +  R+ D + V+ LV     + +G  PT  TF 
Sbjct: 506 KGLHRPNIVFF--------SSIIHSLCIEGRVMDAQDVFNLV-----IHIGDRPTIVTFN 552

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRG 201
            + + Y   GK ++A  +  +M   G    + + NT++   CK  K++    LF+ +   
Sbjct: 553 SLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHK 612

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
           K K   ++YN++ +G     RT+ A ++  EM+D G   ++ TY I+LKG  R    +EA
Sbjct: 613 KVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEA 672

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
              F ++    C+ D+    T+++    V   + A ++F  +   G++P+V+TY  MI+ 
Sbjct: 673 ITLFHKLGAMDCKFDITILNTMINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIRN 732

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           L K+ SVE A  +F  M   G  P+S   N +IR L   G++ +A  ++ ++        
Sbjct: 733 LLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKGDIVKAGYYMSKVDGTIISLE 792

Query: 382 VQTYNILIRYFCDAGE 397
             T ++L+  F   G+
Sbjct: 793 ASTTSLLMSLFSSKGK 808


>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 966

 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 102/344 (29%), Positives = 164/344 (47%), Gaps = 17/344 (4%)

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           +    S++   I    + +     + L   MK + + P   T+ I+ + +  AG  ++A 
Sbjct: 448 FVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQ 507

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGW 217
             F  M   GC  ++ ++  +L    K K++ +A ++F    G     + I+Y+ + +G 
Sbjct: 508 SWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGL 567

Query: 218 CLVKRTNKALEVLKEMVDRGLN----------------PNLTTYNIVLKGYFRAGQIEEA 261
           C      KA EV  +++    N                PN+ TY  ++ G  +A ++ +A
Sbjct: 568 CKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDA 627

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
                 M    CE + + Y  +V GF  VGEI  A+ VF  M   G LPSV TY ++I  
Sbjct: 628 HDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDR 687

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           + K   ++ A+ V  +M+     PN  TY  ++ GLC TGE E+AL  +  M+   C PN
Sbjct: 688 MFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPN 747

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           V TY  LI     AG+++ GLELF +M +  C PN  TY ILI+
Sbjct: 748 VVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRILIN 791



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 125/482 (25%), Positives = 208/482 (43%), Gaps = 74/482 (15%)

Query: 70  QLVDQIIK-RLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWT--LV 126
           Q++  +++  L+N A+  LH     SY       P+   +   L   L+  +  W   ++
Sbjct: 276 QMISGLMEASLFNEAMSFLHRMRCNSY------IPNVVTYRTLLTGFLKKKQLGWCKRII 329

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186
           + M +    P+   F  +   Y +A     A K+F  M+  GC      +N  +  +C  
Sbjct: 330 NMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKLFNRMNTCGCPPGYVVYNIFIGSICGR 389

Query: 187 KKV---------EKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           +++         EK Y   ++       + I+    A   C V +  KA +++KEM+ +G
Sbjct: 390 EELPNPELLDLAEKVYE--EMLVASCVLNKINTANFARCLCGVGKFEKAFQIVKEMMRKG 447

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
             P+ +TY  V+    +A ++++A+  F EMKK     DV TYT ++  F   G I++A+
Sbjct: 448 FVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQ 507

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
           + FD M + G  P+V TY A++    K   +  A  +F  MVG    PN+ TY+ +I GL
Sbjct: 508 SWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGL 567

Query: 358 CHTGEMERALEFVGRM---------------KDDE------------------------- 377
           C  GE+++A E   ++               KD +                         
Sbjct: 568 CKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDA 627

Query: 378 -----------CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
                      CEPN   Y+ L+  FC  GEI+   E+F +M     LP++ TY  LI  
Sbjct: 628 HDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDR 687

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGR 486
           MF   K   L +A K+L +M+     P   T+  +++GL   G    A  +L L  + G 
Sbjct: 688 MF---KDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGC 744

Query: 487 LP 488
            P
Sbjct: 745 SP 746



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/391 (24%), Positives = 158/391 (40%), Gaps = 46/391 (11%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           R+K     P+  T+  + +   SAG+ + A ++   M   G     ++  +    LCKE 
Sbjct: 194 RLKDFGYRPSAVTYNALVQVLASAGQVEMAFRVQKEMSASGFCMDRSTVGSFAQALCKEG 253

Query: 188 KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           +   A +L +  R  FK D +    + +G       N+A+  L  M      PN+ TY  
Sbjct: 254 RWGDALDLLE--REDFKLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSYIPNVVTYRT 311

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           +L G+ +  Q+    R    M    C      + ++VH +    +   A  +F+ M   G
Sbjct: 312 LLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKLFNRMNTCG 371

Query: 308 VLPSVATYNAMIQVLCKKDSV--------------------------------------- 328
             P    YN  I  +C ++ +                                       
Sbjct: 372 CPPGYVVYNIFIGSICGREELPNPELLDLAEKVYEEMLVASCVLNKINTANFARCLCGVG 431

Query: 329 --ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
             E A  + +EM+ KG++P+++TY  VI  LC    +++A      MK     P+V TY 
Sbjct: 432 KFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYT 491

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
           ILI  FC AG IE+    F++M S  C PN+ TY  L+ +     KS  L  A  +   M
Sbjct: 492 ILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYL---KSKQLYQANDIFHRM 548

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
           V     P   T++ +++GL   G    A E+
Sbjct: 549 VGDACYPNAITYSALIDGLCKAGEIQKACEV 579



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/427 (24%), Positives = 176/427 (41%), Gaps = 91/427 (21%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
            M+S    P   T+  +   Y+ + +  +A  IF  M    C  +  +++ ++D LCK  
Sbjct: 512 EMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAG 571

Query: 188 KVEKAYNLFK-------------VFRGK----FKADVISYNVIANGWCLVKRTNKALEVL 230
           +++KA  ++               F GK       +V++Y  + NG C  ++ + A ++L
Sbjct: 572 EIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLL 631

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL------------------------ 266
             M+  G  PN   Y+ ++ G+ + G+I+ A   FL                        
Sbjct: 632 DAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKD 691

Query: 267 -----------EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
                      +M K  C  +VVTYT +V G    GE ++A N+   M   G  P+V TY
Sbjct: 692 GRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTY 751

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG----------EMER 365
            A+I  L K   V+  + +F +M  KG  PN  TY ++I   C  G          EM++
Sbjct: 752 TALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRILINHCCAAGLLDDAHLLLDEMKQ 811

Query: 366 -----------------------ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
                                  +L  +  M+  +  P    Y +LI  F  AG +E  L
Sbjct: 812 THWPKYLQGYRTTVQGFSKRFLASLGLLEEMESHDTAPIAPVYGMLIDSFSKAGRLETAL 871

Query: 403 ELFEKM---GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
           EL ++M    S + + + D +  LI ++ +  + ++   A  L  EM  RG +P    F 
Sbjct: 872 ELHKEMMEVSSSLNMASKDMHTSLIQALCLSSQVEE---AVALYSEMRRRGIVPDLSAFV 928

Query: 460 RVLNGLL 466
            ++ GL+
Sbjct: 929 CLVKGLI 935



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 137/328 (41%), Gaps = 44/328 (13%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           +D  +D   ++ +  +   +  RM      P+  T+  + +R    G+ D A+K+   M 
Sbjct: 646 YDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQML 705

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTN 224
           +  C  ++ ++  ++D LCK  + EKA NL  +   K    +V++Y  + +G     + +
Sbjct: 706 KDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVD 765

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
             LE+  +M  +G  PN  TY I++     AG +++A     EMK+      +  Y T V
Sbjct: 766 AGLELFMQMKTKGCAPNYVTYRILINHCCAAGLLDDAHLLLDEMKQTHWPKYLQGYRTTV 825

Query: 285 HGF--------GVVGEIKRARN---------VFDGMVNGGVL------------------ 309
            GF        G++ E++             + D     G L                  
Sbjct: 826 QGFSKRFLASLGLLEEMESHDTAPIAPVYGMLIDSFSKAGRLETALELHKEMMEVSSSLN 885

Query: 310 -PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
             S   + ++IQ LC    VE A+ ++ EM  +G +P+ + +  +++GL    +   AL+
Sbjct: 886 MASKDMHTSLIQALCLSSQVEEAVALYSEMRRRGIVPDLSAFVCLVKGLIERNKWNEALQ 945

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAG 396
               +    C+  V   N     FCD G
Sbjct: 946 LCYGI----CQEGV---NWEGNKFCDGG 966



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 139/337 (41%), Gaps = 10/337 (2%)

Query: 158 VKIFL-SMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVIS--YNVIA 214
           V+ FL +  + G + +   ++ + ++L  E     A  L +   G+   DV+    NV+ 
Sbjct: 118 VRFFLWAERQVGYKHTGACYDALAEVLGFEDPARTAERLLREI-GEDDRDVLGRLLNVLV 176

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
              CL     +ALE L  + D G  P+  TYN +++    AGQ+E A+R   EM      
Sbjct: 177 RRCCLQGLWGEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMAFRVQKEMSASGFC 236

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
           +D  T  +        G   R  +  D +              MI  L +      A+  
Sbjct: 237 MDRSTVGSFAQALCKEG---RWGDALDLLEREDFKLDTVLCTQMISGLMEASLFNEAMSF 293

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
              M    Y+PN  TY  ++ G     ++      +  M  + C P+   +N L+  +C+
Sbjct: 294 LHRMRCNSYIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCN 353

Query: 395 AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK--SDDLL-VAGKLLIEMVDRGF 451
           A +     +LF +M +  C P    YNI I S+  R++  + +LL +A K+  EM+    
Sbjct: 354 AEDYAYAYKLFNRMNTCGCPPGYVVYNIFIGSICGREELPNPELLDLAEKVYEEMLVASC 413

Query: 452 MPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           +  K         L  +G    A +I++   R G +P
Sbjct: 414 VLNKINTANFARCLCGVGKFEKAFQIVKEMMRKGFVP 450


>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
 gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
          Length = 794

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/384 (28%), Positives = 189/384 (49%), Gaps = 14/384 (3%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSL-GPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG 168
           +D A +L+D          M+ LS+  P   T+  + +      ++  A+ +   M + G
Sbjct: 331 VDEAFKLKD---------EMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKG 381

Query: 169 CRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKAL 227
            + SL + N ++  LC+E ++E+A    K+   +    DVI+YN + + +C  +   KA 
Sbjct: 382 VKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAF 441

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
            ++ EMV  GL  +  T N +L    +  + EEA        +R    D V+Y T++  +
Sbjct: 442 VLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAY 501

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
               + + A  ++D M    + PS+ TYN +I+ LC    +  AI    E++ KG +P+ 
Sbjct: 502 FKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDD 561

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
           TTYN++I   C  G++E+A +F  +M ++  +P+V T N L+   C  G++E+ ++LFE 
Sbjct: 562 TTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFES 621

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467
                   ++ TYN LI ++    K  D+  A     +M  RG  P  FT+N VL+ L  
Sbjct: 622 WAEKGKKVDVITYNTLIQALC---KDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSE 678

Query: 468 IGNQGLAKEILRLQSRCGRLPRQF 491
            G    A+ +L      G+L  +F
Sbjct: 679 AGRSEEAQNMLHKLDESGKLSERF 702



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 176/355 (49%), Gaps = 4/355 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  +D   + +       L+  M+   +  +  T  I+ +     G+ + A+     M
Sbjct: 353 TYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMM 412

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
            E G    + ++NT++D  CK + V KA+ L  ++ R   K D  + N +    C  KR 
Sbjct: 413 TEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRY 472

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A E+L+    RG  P+  +Y  V+  YF+  + E A   + EM KRK    + TY T+
Sbjct: 473 EEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTL 532

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G   +G++  A +  + ++  G++P   TYN +I   CK+  +E A     +M+   +
Sbjct: 533 IKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYF 592

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+  T N ++ GLC  G++E+A++      +   + +V TYN LI+  C  G+++  L 
Sbjct: 593 KPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQALCKDGDVDTALH 652

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
            F  M +    P+  TYN+++S++    +S++   A  +L ++ + G +  +F++
Sbjct: 653 FFADMEARGLQPDAFTYNVVLSALSEAGRSEE---AQNMLHKLDESGKLSERFSY 704



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 164/376 (43%), Gaps = 72/376 (19%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M    L P   T+  + + Y  A    +A  +   M   G +    + NT+L  LCKEK+
Sbjct: 412 MTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKR 471

Query: 189 VEKAYNLFK------------------------------------VFRGKFKADVISYNV 212
            E+A  L +                                    + + K    + +YN 
Sbjct: 472 YEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNT 531

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           +  G C + +  +A++ L E++ +GL P+ TTYNI++  Y + G +E+A++F  +M +  
Sbjct: 532 LIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENY 591

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
            + DVVT  T+++G  + G++++A  +F+     G    V TYN +IQ LCK   V+ A+
Sbjct: 592 FKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQALCKDGDVDTAL 651

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA------LEFVGRM------------- 373
             F +M  +G  P++ TYNVV+  L   G  E A      L+  G++             
Sbjct: 652 HFFADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDESGKLSERFSYPLIKSSA 711

Query: 374 ------KDDE----CEP-------NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
                 KD E    CE        + ++YN  ++  C  G+++    + ++M       +
Sbjct: 712 EEVKTGKDPEVKSDCESGGNAKGGDQESYNKSVKELCVGGQLKEAKAVLDEMMQKGMSVD 771

Query: 417 LDTYNILISSMFVRKK 432
             TY  L+  +  R+K
Sbjct: 772 SSTYITLMEGLIKRQK 787



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 142/329 (43%), Gaps = 41/329 (12%)

Query: 200 RGKFKADVISYNVIANGWCLVKRTN--KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
           RG  +  + + N + +       T+   +L+V + ++   L+PN  T+N+++  +   G 
Sbjct: 166 RGHVRPSLQAANAVLSALARSPSTSPQASLDVFRSLIALRLHPNHYTFNLLVHTHCSKGT 225

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           + +A      M+      DVVTY T++      G +  AR +   M   G+ P+ ATYN 
Sbjct: 226 LADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEARTLLARMKKEGIAPTRATYNT 285

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG----------EMER-- 365
           ++    +   ++ A  V E M   G+ P+  TYNV+  GLC  G          EME   
Sbjct: 286 LVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLS 345

Query: 366 ------------------------ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
                                   AL  +  M+D   + ++ T+NI+++  C  G++E  
Sbjct: 346 IVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEA 405

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
           L   + M      P++ TYN LI +     K+ ++  A  L+ EMV  G     FT N +
Sbjct: 406 LGRLKMMTEEGLAPDVITYNTLIDAYC---KARNVAKAFVLMDEMVRSGLKMDTFTLNTL 462

Query: 462 LNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
           L  L        A+E+LR   + G +P +
Sbjct: 463 LYNLCKEKRYEEAEELLRSPPQRGFVPDE 491



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 127/305 (41%), Gaps = 39/305 (12%)

Query: 92  ILSYHPTYAHSPSSFDHAIDLAARLRDYRT--VWTLVHRMKSLSLGPTQKTFAIIAERYV 149
           +L   P     P    +   +AA  ++ +      L   M    L P+  T+  + +   
Sbjct: 478 LLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLC 537

Query: 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVI 208
           + GK   A+     + + G      ++N I+   CKE  +EKA+    K+    FK DV+
Sbjct: 538 TIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVV 597

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           + N + NG CL  +  KA+++ +   ++G   ++ TYN +++   + G ++ A  FF +M
Sbjct: 598 TCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQALCKDGDVDTALHFFADM 657

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL------------------- 309
           + R  + D  TY  ++      G  + A+N+   +   G L                   
Sbjct: 658 EARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDESGKLSERFSYPLIKSSAEEVKTG 717

Query: 310 --PSV---------------ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
             P V                +YN  ++ LC    ++ A  V +EM+ KG   +S+TY  
Sbjct: 718 KDPEVKSDCESGGNAKGGDQESYNKSVKELCVGGQLKEAKAVLDEMMQKGMSVDSSTYIT 777

Query: 353 VIRGL 357
           ++ GL
Sbjct: 778 LMEGL 782


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 99/335 (29%), Positives = 168/335 (50%), Gaps = 4/335 (1%)

Query: 132 LSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEK 191
           + + P   T+  +       G+   A+ +   M   GC   + ++  +L+  CK    ++
Sbjct: 150 MPMEPDSYTYNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQ 209

Query: 192 AYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250
           A  L    R K  A D+I+YNV+ NG C   R + A+E LK +   G  PN  +YNIVLK
Sbjct: 210 AMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLK 269

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
           G   A + E+A +   EM ++    +VVT+  ++      G ++ A  V D +   G  P
Sbjct: 270 GLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTP 329

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           +  +YN ++   CK+  ++ A+   E MV +G  P+  +YN ++  LC  GE++ A+E +
Sbjct: 330 NSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELL 389

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
            ++KD  C P + +YN +I     AG+ +  LEL  +M +    P++ TY+  ISS   R
Sbjct: 390 HQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYST-ISSGLCR 448

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           +  D +  A +   ++ D G  P    +N +L GL
Sbjct: 449 E--DRIEEAIRAFCKVQDMGIRPNTVLYNAILLGL 481



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 168/344 (48%), Gaps = 4/344 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+ I+ E         +A+K+   M   GC   + ++N +++ +C+E +V+ A   
Sbjct: 189 PDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEF 248

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            K       + + +SYN++  G C  +R   A +++ EM  +G  PN+ T+N+++    R
Sbjct: 249 LKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCR 308

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G +E A     ++ K  C  + ++Y  I+H F    ++ RA    + MV+ G  P + +
Sbjct: 309 RGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVS 368

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN ++  LC+   V+ A+ +  ++  KG  P   +YN VI GL   G+ + ALE +  M 
Sbjct: 369 YNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMV 428

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
               +P++ TY+ +    C    IE  +  F K+      PN   YN ++  +  R+++ 
Sbjct: 429 TKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRETH 488

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           + +    L I M+  G MP + T+  ++ GL   G    A+E+L
Sbjct: 489 NAI---DLFIYMISNGCMPNESTYTILIEGLTYEGLVKEARELL 529



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 164/350 (46%), Gaps = 7/350 (2%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           Y+    L+  M++    P   T+ ++       G+ D A++   S+  HGC  +  S+N 
Sbjct: 207 YKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNI 266

Query: 179 ILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           +L  LC  ++ E A  L      K +  +V+++N++ +  C       A+EVL ++   G
Sbjct: 267 VLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYG 326

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
             PN  +YN +L  + +  +++ A  F   M  R C  D+V+Y T++      GE+  A 
Sbjct: 327 CTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAV 386

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
            +   + + G  P + +YN +I  L K    + A+ +  EMV KG  P+  TY+ +  GL
Sbjct: 387 ELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGL 446

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
           C    +E A+    +++D    PN   YN ++   C   E    ++LF  M S  C+PN 
Sbjct: 447 CREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNE 506

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN---RVLNG 464
            TY ILI  +       +   A +LL E+  RG + +        R+L+G
Sbjct: 507 STYTILIEGLTYEGLVKE---ARELLGELCSRGVVSKGLINKAAIRLLDG 553



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 182/411 (44%), Gaps = 51/411 (12%)

Query: 96  HPTYAHSPSSFDHAIDLAARLR------DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149
           H   A SP++  H      RLR      D      LV  M  L         A + ++  
Sbjct: 46  HAGVAASPNAVPHRAVSNDRLRGLVRRGDLEEALRLVESMSGLEPSAAPGPCAALIKKLC 105

Query: 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVIS 209
           ++G+   A ++  +     C   + ++N ++   C   +++ A  L  V     + D  +
Sbjct: 106 ASGRTAEARRVLAA-----CEPDVMAYNAMVAGYCVTGQLDAARRL--VADMPMEPDSYT 158

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           YN +  G C   RT  AL VL +M+ RG  P++ TY I+L+   +    ++A +   EM+
Sbjct: 159 YNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMR 218

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
            + C  D++TY  +V+G    G +  A      + + G  P+  +YN +++ LC  +  E
Sbjct: 219 AKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWE 278

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE--------------------- 368
           +A  +  EM  KGY PN  T+N++I  LC  G +E A+E                     
Sbjct: 279 DAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPIL 338

Query: 369 --FVGRMKDDE------------CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
             F  + K D             C P++ +YN L+   C  GE++  +EL  ++    C 
Sbjct: 339 HAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCT 398

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           P L +YN +I  +    K+ + L   +LL EMV +G  P   T++ + +GL
Sbjct: 399 PVLISYNTVIDGLTKAGKTKEAL---ELLNEMVTKGLQPDIITYSTISSGL 446



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 159/330 (48%), Gaps = 10/330 (3%)

Query: 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVI 208
           V  G  + A+++  SM       +      ++  LC   +  +A  +        + DV+
Sbjct: 70  VRRGDLEEALRLVESMSGLEPSAAPGPCAALIKKLCASGRTAEARRVL----AACEPDVM 125

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           +YN +  G+C+  + + A  ++ +M    + P+  TYN +++G    G+   A     +M
Sbjct: 126 AYNAMVAGYCVTGQLDAARRLVADM---PMEPDSYTYNTLIRGLCGRGRTGNALVVLDDM 182

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
            +R C  DVVTYT ++         K+A  + D M   G  P + TYN ++  +C++  V
Sbjct: 183 LRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRV 242

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           ++AI   + +   G  PN+ +YN+V++GLC     E A + +  M      PNV T+N+L
Sbjct: 243 DDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNML 302

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           I + C  G +E  +E+ +++    C PN  +YN ++ +   +KK D  +   +L   MV 
Sbjct: 303 ISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVEL---MVS 359

Query: 449 RGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           RG  P   ++N +L  L   G    A E+L
Sbjct: 360 RGCYPDIVSYNTLLTALCRGGEVDAAVELL 389



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 140/278 (50%), Gaps = 17/278 (6%)

Query: 219 LVKRTN--KALEVLKEMVDRGLNPNLTT--YNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
           LV+R +  +AL +++ M   GL P+        ++K    +G+  EA R         CE
Sbjct: 69  LVRRGDLEEALRLVESM--SGLEPSAAPGPCAALIKKLCASGRTAEARRVLA-----ACE 121

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
            DV+ Y  +V G+ V G++  AR +   M    + P   TYN +I+ LC +    NA++V
Sbjct: 122 PDVMAYNAMVAGYCVTGQLDAARRLVADM---PMEPDSYTYNTLIRGLCGRGRTGNALVV 178

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
            ++M+ +G +P+  TY +++   C     ++A++ +  M+   C P++ TYN+++   C 
Sbjct: 179 LDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQ 238

Query: 395 AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
            G ++  +E  + + S  C PN  +YNI++  +   ++ +D   A KL+ EM  +G+ P 
Sbjct: 239 EGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWED---AEKLMAEMSQKGYPPN 295

Query: 455 KFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQFK 492
             TFN +++ L   G    A E+L    + G  P    
Sbjct: 296 VVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLS 333



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 127/285 (44%), Gaps = 8/285 (2%)

Query: 80  WNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQK 139
           W  A K +   +   Y P       +F+  I    R         ++ ++      P   
Sbjct: 277 WEDAEKLMAEMSQKGYPPNVV----TFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSL 332

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           ++  I   +    K DRA+     M   GC   + S+NT+L  LC+  +V+ A  L    
Sbjct: 333 SYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQL 392

Query: 200 RGKFKADV-ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
           + K    V ISYN + +G     +T +ALE+L EMV +GL P++ TY+ +  G  R  +I
Sbjct: 393 KDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRI 452

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           EEA R F +++      + V Y  I+ G     E   A ++F  M++ G +P+ +TY  +
Sbjct: 453 EEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTYTIL 512

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR---GLCHT 360
           I+ L  +  V+ A  +  E+  +G +         IR   G  HT
Sbjct: 513 IEGLTYEGLVKEARELLGELCSRGVVSKGLINKAAIRLLDGTTHT 557


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 103/300 (34%), Positives = 162/300 (54%), Gaps = 7/300 (2%)

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTNK---ALEVL 230
           SFN +++ LCK  K+ +A ++ +  +      +VI+YN + +G+C + R  K   A  +L
Sbjct: 157 SFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAIL 216

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
           KEMV +G+ PN  TYNI++ G+ +   +  A R F EM+++    +VVTY  +++G    
Sbjct: 217 KEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSD 276

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           G++  A  + D MV+  + P+V T+N +I   CK  +V  AI +F +M  +G  PN+ TY
Sbjct: 277 GKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTY 336

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
             +I   C  G ME A      M D    P V TYN LI   C  G+++    L  +M S
Sbjct: 337 TTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVS 396

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
                ++ TYNILI S+  + +S     A KLL EM ++G  P   T+N +++G    GN
Sbjct: 397 KKLSADVVTYNILIDSLCKKGESRK---AVKLLDEMFEKGLNPSHVTYNTLMDGYCREGN 453



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 188/358 (52%), Gaps = 7/358 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK---IF 161
           SF+  ++   ++        ++  MK   + P   T+  + + Y   G+  +  K   I 
Sbjct: 157 SFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAIL 216

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLV 220
             M   G   +  ++N ++D  CK++ V  A  +F ++ R   + +V++YN++ NG C  
Sbjct: 217 KEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSD 276

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
            + ++A+ +  +MV   L PN+ T+N+++ G+ +   + EA   F +M+K+  + + +TY
Sbjct: 277 GKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTY 336

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
           TT++  +   G ++ A  +++ M++ G+ P V+TYN +I  LC+K  V+ A  +  EMV 
Sbjct: 337 TTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVS 396

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           K    +  TYN++I  LC  GE  +A++ +  M +    P+  TYN L+  +C  G +  
Sbjct: 397 KKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRA 456

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
            L +  +M       N+ T+N+LI    ++ + +D   A  LL EM++RG +P + T+
Sbjct: 457 ALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLED---ANGLLNEMLERGLVPNRTTY 511



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 171/331 (51%), Gaps = 20/331 (6%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            ++  M +  + P + T+ I+ + +        A+++F  M   G R ++ ++N +++ L
Sbjct: 214 AILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGL 273

Query: 184 CKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           C + KV++A  L  ++     + +V+++NV+ NG+C  K  N+A+ +  +M  +G++PN 
Sbjct: 274 CSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNA 333

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TY  ++  Y + G++E+A+  +  M  R    +V TY  ++ G    G++K AR++ + 
Sbjct: 334 MTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNE 393

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           MV+  +   V TYN +I  LCKK     A+ + +EM  KG  P+  TYN ++ G C  G 
Sbjct: 394 MVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGN 453

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           +  AL    RM+    + NV T+N+LI+ FC  G +E    L  +M     +PN  TY I
Sbjct: 454 LRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEI 513

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
           +                     EM+++GF+P
Sbjct: 514 IKE-------------------EMMEKGFVP 525



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 145/298 (48%), Gaps = 12/298 (4%)

Query: 176 FNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYN-VIANGWCLVKRTN----KALEV 229
           ++ I   L K  K EK Y++  +F       D    N ++A+   L    N    +  E 
Sbjct: 48  YSKIRSFLDKFVKYEKDYSVSAIFHAISMSGDSFCVNSILADMLVLAFVRNLKILRGFEA 107

Query: 230 LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289
            K   D G   +L + N +L G  +  +  +    + EM KRK E++V+++  +V+G   
Sbjct: 108 FKRAGDYGFKLSLISCNPLLSGLVKESENGDMEFVYREMIKRKIELNVISFNIVVNGLCK 167

Query: 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE---NAILVFEEMVGKGYMPN 346
           VG++ RA +V + M   GV P+V TYN +I   CK   +     A  + +EMV KG  PN
Sbjct: 168 VGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPN 227

Query: 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
             TYN++I G C    +  A+   G M+     PNV TYNILI   C  G+++  + L +
Sbjct: 228 EVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRD 287

Query: 407 KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           +M S    PN+ T+N+LI+     K  ++   A  L  +M  +G  P   T+  +++ 
Sbjct: 288 QMVSSDLEPNVVTHNVLINGFCKNKTVNE---AINLFNDMEKQGVDPNAMTYTTLIDA 342



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 119/224 (53%), Gaps = 17/224 (7%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            L + M+   + P   T+  + + Y   G+ + A  ++  M + G    ++++N ++  L
Sbjct: 319 NLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGL 378

Query: 184 CKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           C++  V+ A +L  ++   K  ADV++YN++ +  C    + KA+++L EM ++GLNP+ 
Sbjct: 379 CRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSH 438

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TYN ++ GY R G +  A      M+++  + +VVT+  ++ GF + G ++ A  + + 
Sbjct: 439 VTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNE 498

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
           M+  G++P+  TY                 ++ EEM+ KG++P+
Sbjct: 499 MLERGLVPNRTTYE----------------IIKEEMMEKGFVPD 526



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 82/154 (53%), Gaps = 1/154 (0%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           S+++  I    R  D +   +L++ M S  L     T+ I+ +     G++ +AVK+   
Sbjct: 369 STYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDE 428

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL-FKVFRGKFKADVISYNVIANGWCLVKR 222
           M E G   S  ++NT++D  C+E  +  A  +  ++ R   +A+V+++NV+  G+CL  R
Sbjct: 429 MFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGR 488

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256
              A  +L EM++RGL PN TTY I+ +     G
Sbjct: 489 LEDANGLLNEMLERGLVPNRTTYEIIKEEMMEKG 522



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 2/148 (1%)

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGR-MKDDECEPNVQTYNILIRYFCDAGEIER 400
           G+  +  + N ++ GL    E    +EFV R M   + E NV ++NI++   C  G++ R
Sbjct: 115 GFKLSLISCNPLLSGLVKESE-NGDMEFVYREMIKRKIELNVISFNIVVNGLCKVGKLNR 173

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
             ++ E M      PN+ TYN LI       +   +  A  +L EMV +G  P + T+N 
Sbjct: 174 AGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNI 233

Query: 461 VLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           +++G     N   A  +     R G  P
Sbjct: 234 LIDGFCKDENVSGAMRVFGEMQRQGLRP 261


>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1280

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 173/327 (52%), Gaps = 4/327 (1%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KV 198
           T+ I+       G+   A+++   +       ++  ++TI+D LCK+K V  AY L+ ++
Sbjct: 160 TYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCKDKLVTDAYGLYSEM 219

Query: 199 FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
              +    V++++ +  G+C+V +   A  +  EMV + +NP+  T+NI++    + G+I
Sbjct: 220 IVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCKEGKI 279

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           +EA      M K   E  VVTY T++ G+ +V E+ +A++V   +    V P+  +YN M
Sbjct: 280 KEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRMRVAPNSRSYNIM 339

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           I   CK   V+ A+ +F EM  +G  P+  TYN +I GLC  G +  A E V  M ++  
Sbjct: 340 INGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEMHNNCI 399

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
             ++ TYN LI  FC    +++ + L +K+      PN+ TYNILI  +    K   L  
Sbjct: 400 PADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQPNMCTYNILIDGLC---KGGQLKN 456

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           A  +  +++ +G+    +T+N ++NGL
Sbjct: 457 AQDVFQDLLIKGYNVNAWTYNIMINGL 483



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/333 (31%), Positives = 165/333 (49%), Gaps = 4/333 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           PT  TF+ +   +   GK   A ++F  M          +FN ++D LCKE K+++A N+
Sbjct: 226 PTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCKEGKIKEAKNV 285

Query: 196 FKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             V  +   +  V++YN + +G+CLV    KA  VL  +    + PN  +YNI++ G+ +
Sbjct: 286 IAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRMRVAPNSRSYNIMINGFCK 345

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
              ++EA   F EM  R      VTY +++ G    G I  A  + D M N  +   + T
Sbjct: 346 IKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEMHNNCIPADIVT 405

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN++I V CK   V+ AI + +++   G  PN  TYN++I GLC  G+++ A +    + 
Sbjct: 406 YNSLIDVFCKNQHVDKAIALVKKIKEHGIQPNMCTYNILIDGLCKGGQLKNAQDVFQDLL 465

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
                 N  TYNI+I   C  G  +    L  KM     +P+  TY  +I ++F + +++
Sbjct: 466 IKGYNVNAWTYNIMINGLCKEGLFDEAEVLLSKMEDNGIIPDAVTYETIIQALFHKDENE 525

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467
               A KLL EMV +G +   F   R L G  L
Sbjct: 526 K---AQKLLREMVIKGVVVYAFEIRRTLVGRTL 555



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 153/291 (52%), Gaps = 1/291 (0%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           ++  + L + M   ++ P   TF I+ +     GK   A  +   M + G   ++ ++NT
Sbjct: 244 FKDAFRLFNEMVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNT 303

Query: 179 ILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           ++D  C   +V KA ++  +  R +   +  SYN++ NG+C +K  ++AL +  EM  RG
Sbjct: 304 LMDGYCLVNEVGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRG 363

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
           + P+  TYN ++ G  +AG+I  AW    EM       D+VTY +++  F     + +A 
Sbjct: 364 IAPHKVTYNSLIDGLCKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAI 423

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
            +   +   G+ P++ TYN +I  LCK   ++NA  VF++++ KGY  N+ TYN++I GL
Sbjct: 424 ALVKKIKEHGIQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGL 483

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           C  G  + A   + +M+D+   P+  TY  +I+      E E+  +L  +M
Sbjct: 484 CKEGLFDEAEVLLSKMEDNGIIPDAVTYETIIQALFHKDENEKAQKLLREM 534



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 180/364 (49%), Gaps = 28/364 (7%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           Y TV +L  +M+S  + P   T +I+   Y   G+   A  +F  + + G          
Sbjct: 83  YPTVLSLSTQMESKGVKPDLFTLSILINCYCHLGQMTFAFSVFAKILKMG---------- 132

Query: 179 ILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
               LC   KV +A  LF   V    F  + ++Y ++ NG C + +T  AL+VL+++  +
Sbjct: 133 ----LCLNGKVNEAL-LFHDHVLALGFHLNHVTYGILINGLCKMGQTRAALQVLRQIEGK 187

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
            +N N+  Y+ ++ G  +   + +A+  + EM  ++    VVT++++++GF +VG+ K A
Sbjct: 188 LVNTNVVMYSTIIDGLCKDKLVTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDA 247

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
             +F+ MV   + P   T+N ++  LCK+  ++ A  V   M+ +G  P   TYN ++ G
Sbjct: 248 FRLFNEMVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDG 307

Query: 357 LCHTGEMERA---LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
            C   E+ +A   L  + RM+     PN ++YNI+I  FC    ++  L LF +M     
Sbjct: 308 YCLVNEVGKAKHVLSIISRMR---VAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGI 364

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGL 473
            P+  TYN LI  +    K+  +  A +L+ EM +        T+N +++  +   NQ +
Sbjct: 365 APHKVTYNSLIDGLC---KAGRIPYAWELVDEMHNNCIPADIVTYNSLID--VFCKNQHV 419

Query: 474 AKEI 477
            K I
Sbjct: 420 DKAI 423



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 117/224 (52%), Gaps = 4/224 (1%)

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
           + V +++ RM+   + P  +++ I+   +      D A+ +F  M   G      ++N++
Sbjct: 318 KHVLSIISRMR---VAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSL 374

Query: 180 LDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           +D LCK  ++  A+ L  ++      AD+++YN + + +C  +  +KA+ ++K++ + G+
Sbjct: 375 IDGLCKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGI 434

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
            PN+ TYNI++ G  + GQ++ A   F ++  +   ++  TY  +++G    G    A  
Sbjct: 435 QPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKEGLFDEAEV 494

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           +   M + G++P   TY  +IQ L  KD  E A  +  EMV KG
Sbjct: 495 LLSKMEDNGIIPDAVTYETIIQALFHKDENEKAQKLLREMVIKG 538



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 113/232 (48%), Gaps = 2/232 (0%)

Query: 79  LWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQ 138
           L N   KA H  +I+S     A +  S++  I+   +++       L H M    + P +
Sbjct: 310 LVNEVGKAKHVLSIIS-RMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHK 368

Query: 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV 198
            T+  + +    AG+   A ++   MH +     + ++N+++D+ CK + V+KA  L K 
Sbjct: 369 VTYNSLIDGLCKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKK 428

Query: 199 FRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
            +    + ++ +YN++ +G C   +   A +V ++++ +G N N  TYNI++ G  + G 
Sbjct: 429 IKEHGIQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKEGL 488

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
            +EA     +M+      D VTY TI+       E ++A+ +   MV  GV+
Sbjct: 489 FDEAEVLLSKMEDNGIIPDAVTYETIIQALFHKDENEKAQKLLREMVIKGVV 540



 Score = 46.6 bits (109), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 75/182 (41%), Gaps = 25/182 (13%)

Query: 310 PSVATYNAMIQVLCK-KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
           PS+  +N ++  L K K+     + +  +M  KG  P+  T +++I   CH G+M  A  
Sbjct: 64  PSIVEFNKILTYLIKTKNHYPTVLSLSTQMESKGVKPDLFTLSILINCYCHLGQMTFAFS 123

Query: 369 FVGRM---------KDDEC------------EPNVQTYNILIRYFCDAGEIERGLELFEK 407
              ++         K +E               N  TY ILI   C  G+    L++  +
Sbjct: 124 VFAKILKMGLCLNGKVNEALLFHDHVLALGFHLNHVTYGILINGLCKMGQTRAALQVLRQ 183

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467
           +   +   N+  Y+ +I  +   K   D   A  L  EM+ +   P   TF+ ++ G  +
Sbjct: 184 IEGKLVNTNVVMYSTIIDGLCKDKLVTD---AYGLYSEMIVKRIPPTVVTFSSLIYGFCI 240

Query: 468 IG 469
           +G
Sbjct: 241 VG 242


>gi|224083888|ref|XP_002307160.1| predicted protein [Populus trichocarpa]
 gi|222856609|gb|EEE94156.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 107/354 (30%), Positives = 173/354 (48%), Gaps = 4/354 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   TF+I+    +  G  D AV +F  M   GC+  L  +N ++D LC   +++++  L
Sbjct: 322 PNSTTFSIVINGLIKTGDLDLAVGLFRDMARIGCKPDLLLYNNLIDGLCTSNRLQESCGL 381

Query: 196 FKVFR-GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            +       +    + N I    C     + AL +LK+M   G  P +     ++K   +
Sbjct: 382 LQEMEESGIEPTSFTNNCIFGCLCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCK 441

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G+  EA +F ++M +   + D+V Y+  + G   + E+ +A  +F  +   G  P V  
Sbjct: 442 HGKEVEACKFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYCPDVIA 501

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN +I+ LCK   +  A  +  EM  KG +P++ TYN +I GLC T  +E A+ F+  M 
Sbjct: 502 YNILIKGLCKTQRIAEAQNLLHEMEEKGLVPSAVTYNTLIDGLCKTDHLEEAMLFLSMMI 561

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
           + E EPNV TY+ LI   C+AG  +  L L+ +MG   C P+   Y   I  +    + +
Sbjct: 562 EKEREPNVITYSTLINGLCNAGRPDDALVLWNEMGRKGCTPSSIAYMAFIHGLSNCGRPN 621

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           + LV    L EM +R   P  + +  +LN  L+  NQ LA EIL+     G+ P
Sbjct: 622 EALV---YLREMEEREMKPDTYVYVGLLNAFLVDSNQPLAFEILQEMVDKGKFP 672



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 148/316 (46%), Gaps = 9/316 (2%)

Query: 125 LVHRMKSLSLGPTQKT----FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180
           L+  M+   + PT  T    F  +  R+  +G    A+ +   M  HG    +    +++
Sbjct: 381 LLQEMEESGIEPTSFTNNCIFGCLCRRHDISG----ALHLLKKMRIHGHVPWIKHSTSLV 436

Query: 181 DLLCKE-KKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
             LCK  K+VE    L  +    F+ D+++Y+   +G   ++  ++AL++ +++  +G  
Sbjct: 437 KELCKHGKEVEACKFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYC 496

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           P++  YNI++KG  +  +I EA     EM+++      VTY T++ G      ++ A   
Sbjct: 497 PDVIAYNILIKGLCKTQRIAEAQNLLHEMEEKGLVPSAVTYNTLIDGLCKTDHLEEAMLF 556

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
              M+     P+V TY+ +I  LC     ++A++++ EM  KG  P+S  Y   I GL +
Sbjct: 557 LSMMIEKEREPNVITYSTLINGLCNAGRPDDALVLWNEMGRKGCTPSSIAYMAFIHGLSN 616

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419
            G    AL ++  M++ E +P+   Y  L+  F          E+ ++M      P+L  
Sbjct: 617 CGRPNEALVYLREMEEREMKPDTYVYVGLLNAFLVDSNQPLAFEILQEMVDKGKFPDLHD 676

Query: 420 YNILISSMFVRKKSDD 435
            N +     + K S+D
Sbjct: 677 KNHISVRNAILKFSED 692



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 100/448 (22%), Positives = 182/448 (40%), Gaps = 104/448 (23%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           + FD A+D+   + D   V               +  F+I+   +   GK D+A ++  +
Sbjct: 115 AEFDKALDVFNEIHDRGWV--------------DEYVFSILVLAFSKWGKVDKACELIET 160

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKR 222
           M E   R +  +F +++    KE +V+KA +LF K+ +  F  D+  Y+VI  G C+ K 
Sbjct: 161 MEEKNVRLNKKTFCSLIYGFVKESRVDKALHLFDKMKKSGFTPDISLYDVIIGGLCVNKD 220

Query: 223 TNKALEVLKEM-------------------------------VDRGLNPNLTT--YNIVL 249
             KAL +  EM                               +   ++P  +T  YN VL
Sbjct: 221 VKKALCLYSEMKGFKIQPDVKIVTKLISSFSKEEELTCFFEEMHEDMDPKASTLLYNSVL 280

Query: 250 KGYFRAGQIEEAWRFFLEMKKRKC----EI------------DVVTYTTIVHGFGVVGEI 293
                 G + +A+     +    C    EI            +  T++ +++G    G++
Sbjct: 281 NSLVDNGSVHKAYHLLQAITIGNCIGDGEIGKLFRGKAMVPPNSTTFSIVINGLIKTGDL 340

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
             A  +F  M   G  P +  YN +I  LC  + ++ +  + +EM   G  P S T N +
Sbjct: 341 DLAVGLFRDMARIGCKPDLLLYNNLIDGLCTSNRLQESCGLLQEMEESGIEPTSFTNNCI 400

Query: 354 -----------------------------------IRGLCHTGEMERALEFVGRMKDDEC 378
                                              ++ LC  G+   A +F+  M ++  
Sbjct: 401 FGCLCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCKHGKEVEACKFLVDMAEEGF 460

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISSMFVRKKSDDLL 437
           +P++  Y+  +       E+++ L+LF+ +   G C P++  YNILI  +    K+  + 
Sbjct: 461 QPDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYC-PDVIAYNILIKGLC---KTQRIA 516

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            A  LL EM ++G +P   T+N +++GL
Sbjct: 517 EAQNLLHEMEEKGLVPSAVTYNTLIDGL 544



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 130/287 (45%), Gaps = 3/287 (1%)

Query: 103 PSSFDHAIDLAA--RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P+SF +        R  D      L+ +M+     P  K    + +     GK   A K 
Sbjct: 392 PTSFTNNCIFGCLCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCKHGKEVEACKF 451

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCL 219
            + M E G +  + +++  LD L K ++V++A  LF+ +    +  DVI+YN++  G C 
Sbjct: 452 LVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYCPDVIAYNILIKGLCK 511

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
            +R  +A  +L EM ++GL P+  TYN ++ G  +   +EEA  F   M +++ E +V+T
Sbjct: 512 TQRIAEAQNLLHEMEEKGLVPSAVTYNTLIDGLCKTDHLEEAMLFLSMMIEKEREPNVIT 571

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y+T+++G    G    A  +++ M   G  PS   Y A I  L        A++   EM 
Sbjct: 572 YSTLINGLCNAGRPDDALVLWNEMGRKGCTPSSIAYMAFIHGLSNCGRPNEALVYLREME 631

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            +   P++  Y  ++           A E +  M D    P++   N
Sbjct: 632 EREMKPDTYVYVGLLNAFLVDSNQPLAFEILQEMVDKGKFPDLHDKN 678



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 139/320 (43%), Gaps = 25/320 (7%)

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRT 223
           MH+HG      +   +L + C   + +KA ++F     +   D   ++++   +    + 
Sbjct: 92  MHDHGWGFDKYTLTPVLQVYCNMAEFDKALDVFNEIHDRGWVDEYVFSILVLAFSKWGKV 151

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           +KA E+++ M ++ +  N  T+  ++ G+ +  ++++A   F +MKK     D+  Y  I
Sbjct: 152 DKACELIETMEEKNVRLNKKTFCSLIYGFVKESRVDKALHLFDKMKKSGFTPDISLYDVI 211

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G  V  ++K+A  ++  M    + P V     +I    K+   E     FEEM  +  
Sbjct: 212 IGGLCVNKDVKKALCLYSEMKGFKIQPDVKIVTKLISSFSKE---EELTCFFEEM-HEDM 267

Query: 344 MPNSTT--YNVVIRGLCHTGEMERALEFVGRMKDDEC----------------EPNVQTY 385
            P ++T  YN V+  L   G + +A   +  +    C                 PN  T+
Sbjct: 268 DPKASTLLYNSVLNSLVDNGSVHKAYHLLQAITIGNCIGDGEIGKLFRGKAMVPPNSTTF 327

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           +I+I      G+++  + LF  M    C P+L  YN LI  +     S+ L  +  LL E
Sbjct: 328 SIVINGLIKTGDLDLAVGLFRDMARIGCKPDLLLYNNLIDGLCT---SNRLQESCGLLQE 384

Query: 446 MVDRGFMPRKFTFNRVLNGL 465
           M + G  P  FT N +   L
Sbjct: 385 MEESGIEPTSFTNNCIFGCL 404



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 90/403 (22%), Positives = 170/403 (42%), Gaps = 58/403 (14%)

Query: 135 GPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN 194
           G  + T   + + Y +  + D+A+ +F  +H+ G       F+ ++    K  KV+KA  
Sbjct: 98  GFDKYTLTPVLQVYCNMAEFDKALDVFNEIHDRGWVDEY-VFSILVLAFSKWGKVDKACE 156

Query: 195 LFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
           L +    K  + +  ++  +  G+    R +KAL +  +M   G  P+++ Y++++ G  
Sbjct: 157 LIETMEEKNVRLNKKTFCSLIYGFVKESRVDKALHLFDKMKKSGFTPDISLYDVIIGGLC 216

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
               +++A   + EMK  K + DV   T ++  F    E+      F   ++  + P  +
Sbjct: 217 VNKDVKKALCLYSEMKGFKIQPDVKIVTKLISSFSKEEEL----TCFFEEMHEDMDPKAS 272

Query: 314 T--YNAMIQVLCKKDSVENAILVFEEM-----VGKGYM-----------PNSTTYNVVIR 355
           T  YN+++  L    SV  A  + + +     +G G +           PNSTT+++VI 
Sbjct: 273 TLLYNSVLNSLVDNGSVHKAYHLLQAITIGNCIGDGEIGKLFRGKAMVPPNSTTFSIVIN 332

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
           GL  TG+++ A+     M    C+P++  YN LI   C +  ++    L ++M      P
Sbjct: 333 GLIKTGDLDLAVGLFRDMARIGCKPDLLLYNNLIDGLCTSNRLQESCGLLQEMEESGIEP 392

Query: 416 NLDTYNILISSMFVR----------------------KKSDDL----------LVAGKLL 443
              T N +   +  R                      K S  L          + A K L
Sbjct: 393 TSFTNNCIFGCLCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCKHGKEVEACKFL 452

Query: 444 IEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGR 486
           ++M + GF P    ++  L+GL+ I  Q + + +   Q  C +
Sbjct: 453 VDMAEEGFQPDIVAYSACLDGLIKI--QEVDQALKLFQDICAQ 493



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 137/325 (42%), Gaps = 68/325 (20%)

Query: 218 CLVKRTNKALEV------LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
           CL++  +K++ +      LKEM D G   +  T   VL+ Y    + ++A   F E+  R
Sbjct: 71  CLLEVLSKSICIDLLEMRLKEMHDHGWGFDKYTLTPVLQVYCNMAEFDKALDVFNEIHDR 130

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
              +D   ++ +V  F   G++ +A  + + M    V  +  T+ ++I    K+  V+ A
Sbjct: 131 G-WVDEYVFSILVLAFSKWGKVDKACELIETMEEKNVRLNKKTFCSLIYGFVKESRVDKA 189

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT------- 384
           + +F++M   G+ P+ + Y+V+I GLC   ++++AL     MK  + +P+V+        
Sbjct: 190 LHLFDKMKKSGFTPDISLYDVIIGGLCVNKDVKKALCLYSEMKGFKIQPDVKIVTKLISS 249

Query: 385 --------------------------YNILIRYFCDAGEIERGLELFEKMGSGVCL---- 414
                                     YN ++    D G + +   L + +  G C+    
Sbjct: 250 FSKEEELTCFFEEMHEDMDPKASTLLYNSVLNSLVDNGSVHKAYHLLQAITIGNCIGDGE 309

Query: 415 ------------PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
                       PN  T++I+I+ +    K+ DL +A  L  +M   G  P    +N ++
Sbjct: 310 IGKLFRGKAMVPPNSTTFSIVINGLI---KTGDLDLAVGLFRDMARIGCKPDLLLYNNLI 366

Query: 463 NGLLLIGNQGLAKEILRLQSRCGRL 487
           +GL             RLQ  CG L
Sbjct: 367 DGLCTSN---------RLQESCGLL 382


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 113/368 (30%), Positives = 189/368 (51%), Gaps = 8/368 (2%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG--CRQSLNSFNTILDL 182
           L+HR   L   P   +++I+ +     GK+ +A  +   M E G  C   + +++T++D 
Sbjct: 169 LLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDG 228

Query: 183 LCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
             KE  V KA +LFK  V RG    D ++Y+ + +  C  +  +KA   L++MV++G+ P
Sbjct: 229 FFKEGDVNKACDLFKEMVQRG-IPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLP 287

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           N  TYN ++ GY   GQ +EA R F EM++     DVVT + ++      G+IK AR+VF
Sbjct: 288 NNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVF 347

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           D M   G  P+V +Y  M+     K  + +   +F+ M+G G  P+  T+NV+I+   + 
Sbjct: 348 DTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANC 407

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
           G +++A+     M+D   +P+V TY  +I   C  G+++  +E F +M      P+   Y
Sbjct: 408 GMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAY 467

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           + LI   F    S  LL A +L+ E+++ G       F+ ++N L  +G    A+ I  L
Sbjct: 468 HCLIQG-FCTHGS--LLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDL 524

Query: 481 QSRCGRLP 488
               G  P
Sbjct: 525 TVNVGLHP 532



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 180/384 (46%), Gaps = 42/384 (10%)

Query: 134 LGPTQKTFAIIAE-----------------------------------RYVSAGKADRAV 158
           L PT  T+AI+ +                                    +  A + D A+
Sbjct: 107 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDEAL 166

Query: 159 KIFL-SMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR---GKFKADVISYNVIA 214
            I L    E GC   + S++ +L  LC + K  +A +L ++          DV++Y+ + 
Sbjct: 167 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVI 226

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
           +G+      NKA ++ KEMV RG+ P+  TY+ V+    +A  +++A  F  +M  +   
Sbjct: 227 DGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVL 286

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
            +  TY  +++G+   G+ K A  VF  M    +LP V T + ++  LCK   ++ A  V
Sbjct: 287 PNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDV 346

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
           F+ M  KG  PN  +Y +++ G    G +    +    M  D   P++ T+N+LI+ + +
Sbjct: 347 FDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYAN 406

Query: 395 AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
            G +++ + +F +M      P++ TY  +I+++    K DD   A +   +M+D+G  P 
Sbjct: 407 CGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDD---AMEKFNQMIDQGVAPD 463

Query: 455 KFTFNRVLNGLLLIGNQGLAKEIL 478
           K+ ++ ++ G    G+   AKE++
Sbjct: 464 KYAYHCLIQGFCTHGSLLKAKELI 487



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 163/355 (45%), Gaps = 6/355 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   ++ I+   Y + G       +F  M   G    + +FN ++        ++KA  +
Sbjct: 357 PNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMII 416

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F   R    K DV++Y  +    C + + + A+E   +M+D+G+ P+   Y+ +++G+  
Sbjct: 417 FNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCT 476

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G + +A     E+      +D+V +++I++    +G +  A+N+FD  VN G+ P+   
Sbjct: 477 HGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVV 536

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y+ ++   C    +E A+ VF+ MV  G  PN   Y  ++ G C  G ++  L     M 
Sbjct: 537 YSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREML 596

Query: 375 DDECEPNVQTYNILIRYFCDAGE-IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
               +P+   YNI+I    +AG  +   ++  E   SG+ + N  TYNI++  +F  +  
Sbjct: 597 QKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAM-NKCTYNIVLRGLFKNRCF 655

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           D+ +    L  E+          T N ++ G+        AK++    SR G +P
Sbjct: 656 DEAIF---LFKELRAMNVKINIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVP 707



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 95/399 (23%), Positives = 179/399 (44%), Gaps = 12/399 (3%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAA--RLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           KA+  FN +  H      P    +   +AA  R+          ++M    + P +  + 
Sbjct: 412 KAMIIFNEMRDHGV---KPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYH 468

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV-FRG 201
            + + + + G   +A ++   +  +G    +  F++I++ LCK  +V  A N+F +    
Sbjct: 469 CLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNV 528

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
                 + Y+++ +G+CLV +  KAL V   MV  G+ PN   Y  ++ GY + G+I+E 
Sbjct: 529 GLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEG 588

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
              F EM ++  +   + Y  I+ G    G    A+  F  M   G+  +  TYN +++ 
Sbjct: 589 LSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRG 648

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           L K    + AI +F+E+       N  T N +I G+  T  +E A +    +      P 
Sbjct: 649 LFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPC 708

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
           V TY+I+I      G +E   ++F  M +  C P+    N ++  +    K ++++ AG 
Sbjct: 709 VVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELL---KKNEIVRAGA 765

Query: 442 LLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
            L ++ +R F     T   +++   L  ++G  +E +R 
Sbjct: 766 YLSKIDERNFSLEHLTTMLLVD---LFSSKGTCREHIRF 801



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 116/267 (43%), Gaps = 41/267 (15%)

Query: 236 RGLNPNLTTYNI-----------------------------------VLKGYFRAGQIEE 260
           R L+P   TY I                                   +LKG+  A + +E
Sbjct: 105 RVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDE 164

Query: 261 AWRFFLE-MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL--PSVATYNA 317
           A    L    +  C  DV +Y+ ++      G+  +A ++   M  GG +  P V  Y+ 
Sbjct: 165 ALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYST 224

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           +I    K+  V  A  +F+EMV +G  P+  TY+ V+  LC    M++A  F+ +M +  
Sbjct: 225 VIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKG 284

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
             PN  TYN LI  +   G+ +  + +F++M     LP++ T ++L+ S+    K  +  
Sbjct: 285 VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKE-- 342

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNG 464
            A  +   M  +G  P  F++  +LNG
Sbjct: 343 -ARDVFDTMAMKGQNPNVFSYTIMLNG 368



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 6/185 (3%)

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE- 368
           P+  TY  ++    +    E A+  F +++  G   N    N +++G C     + AL+ 
Sbjct: 109 PTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDEALDI 168

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM--GSGVCLPNLDTYNILISS 426
            + R  +  C P+V +Y+IL++  CD G+  +  +L   M  G  VC P++  Y+ +I  
Sbjct: 169 LLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDG 228

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGR 486
            F   K  D+  A  L  EMV RG  P   T++ V++ L        A+  LR     G 
Sbjct: 229 FF---KEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGV 285

Query: 487 LPRQF 491
           LP  +
Sbjct: 286 LPNNW 290


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/404 (27%), Positives = 201/404 (49%), Gaps = 22/404 (5%)

Query: 81  NHALKALHFFNILSYH---PTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPT 137
            H  +A+    ++  H   PT     +  D  +  A RL +     +L+  M+     P+
Sbjct: 542 GHVDEAVKLLEVMKKHECIPTVVTYTTLVD-GLGKAGRLDE---AVSLLREMEKQGCEPS 597

Query: 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK 197
             T++ +   +    + + ++ +F  M   GC   +++++ +++ LCK   V++A ++F 
Sbjct: 598 VVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVF- 656

Query: 198 VFRGKFKADVI-----SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
              G+ K + +     +Y  + +     ++ + AL++  E+ +  L P+   YNI++ G 
Sbjct: 657 ---GRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGL 713

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
            ++ +++EA +    MK +    D+ TYT+++ G G  G ++ A N+F  M   G  P V
Sbjct: 714 VKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDV 773

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
             Y +++ VL K   + +A+++F  M  K  +P+  TY+ +I  L   G +E A  F   
Sbjct: 774 VAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFEN 833

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
                C PNV  Y+ LI  F   G ++R LELFE+M    C PN+ TYN L+S +    K
Sbjct: 834 SISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGL---AK 890

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKE 476
           +  L VA KLL EM   G +P   T+N +++G   +G  G+  E
Sbjct: 891 AGRLNVAEKLLEEMEKVGCVPDLVTYNILIDG---VGKMGMVDE 931



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 126/479 (26%), Positives = 228/479 (47%), Gaps = 59/479 (12%)

Query: 39  DPAA--LASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFN---IL 93
           DPAA  +  +I +  DP           +H    L+D ++K    +  +A  FFN    L
Sbjct: 304 DPAAEPIQEMIKSGIDP----------GVHTFTVLIDALVKS--GNIDEACKFFNGMKNL 351

Query: 94  SYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGK 153
              P    + ++  + +  A RL +   V+     MK  +  P    +  + +    AG+
Sbjct: 352 RCSPNVV-TYTTLVNGLAKAGRLEEACEVFV---EMKENNCSPDAIAYNTLIDGLGKAGE 407

Query: 154 ADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNV 212
           AD A  +F  M + G   +L ++N ++ +L K  +  +A+ LF   + +    DV +YN 
Sbjct: 408 ADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNT 467

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLN------------------------PNL------ 242
           + +      + +K L ++KEMV++G                          P+L      
Sbjct: 468 LIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSLG 527

Query: 243 -TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
             TYN ++  +   G ++EA +    MKK +C   VVTYTT+V G G  G +  A ++  
Sbjct: 528 EITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLR 587

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M   G  PSV TY++++    K+D  E ++ +F+EMV KG + + +TY++VI  LC + 
Sbjct: 588 EMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSD 647

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
           ++++AL+  GRMK++  EP +  Y  L+       +I+  L++F ++     +P+   YN
Sbjct: 648 DVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYN 707

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           I+++ +    + D+   A KL+  M ++  +P  FT+  +L+GL   G  G  +E   +
Sbjct: 708 IMVNGLVKSNRVDE---ACKLVDSMKNQNILPDLFTYTSLLDGL---GKSGRLEEAFNM 760



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 167/327 (51%), Gaps = 4/327 (1%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           T++++      +   D+A+ +F  M E G    L ++ T+L  L K++K++ A  +F   
Sbjct: 635 TYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNEL 694

Query: 200 R-GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
           +      D   YN++ NG     R ++A +++  M ++ + P+L TY  +L G  ++G++
Sbjct: 695 QESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRL 754

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           EEA+  F +M +   E DVV YT+++   G  G++  A  +F  M     +P V TY+++
Sbjct: 755 EEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSL 814

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           I  L K+  VE A   FE  + KG  PN   Y+ +I      G ++RALE    M+  +C
Sbjct: 815 IDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQC 874

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
            PN+ TYN L+     AG +    +L E+M    C+P+L TYNILI  +      D+   
Sbjct: 875 PPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDE--- 931

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           A      M ++G +P   TF  ++  L
Sbjct: 932 AESYFKRMKEKGIVPDVITFTSLIESL 958



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/365 (27%), Positives = 173/365 (47%), Gaps = 4/365 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  MK     PT  T+  + +    AG+ D AV +   M + GC  S+ ++++++    
Sbjct: 550 LLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFY 609

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  + E++ +LF ++ R    ADV +Y+++ N  C     ++AL+V   M + G+ P L 
Sbjct: 610 KRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLG 669

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            Y  +L    +  +I+ A + F E+++     D   Y  +V+G      +  A  + D M
Sbjct: 670 NYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSM 729

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            N  +LP + TY +++  L K   +E A  +F +M  +G+ P+   Y  ++  L   G++
Sbjct: 730 KNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKL 789

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             AL     M    C P+V TY+ LI      G +E     FE   S  C PN+  Y+ L
Sbjct: 790 SHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSL 849

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I S   +   D  L   +L  EM  R   P   T+N +L+GL   G   +A+++L    +
Sbjct: 850 IDSFGKKGMVDRAL---ELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEK 906

Query: 484 CGRLP 488
            G +P
Sbjct: 907 VGCVP 911



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 105/415 (25%), Positives = 192/415 (46%), Gaps = 10/415 (2%)

Query: 63   PSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTV 122
            PS+     L+    KR  +   ++L  F+ +      A   S++   I+   +  D    
Sbjct: 596  PSVVTYSSLMASFYKR--DQEEESLSLFDEMVRKGCVA-DVSTYSLVINCLCKSDDVDQA 652

Query: 123  WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
              +  RMK   + P    +  +    V   K D A++IF  + E         +N +++ 
Sbjct: 653  LDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNG 712

Query: 183  LCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
            L K  +V++A  L    + +    D+ +Y  + +G     R  +A  +  +M + G  P+
Sbjct: 713  LVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPD 772

Query: 242  LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
            +  Y  ++    + G++  A   F  M K++C  DVVTY++++   G  G ++ A   F+
Sbjct: 773  VVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFE 832

Query: 302  GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
              ++ G  P+V  Y+++I    KK  V+ A+ +FEEM  +   PN  TYN ++ GL   G
Sbjct: 833  NSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAG 892

Query: 362  EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
             +  A + +  M+   C P++ TYNILI      G ++     F++M     +P++ T+ 
Sbjct: 893  RLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFT 952

Query: 422  ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKE 476
             LI S+    K D LL A +L   M + G+ P   T+N +++   ++G  G   E
Sbjct: 953  SLIESL---GKVDKLLEACELFDSMEEEGYNPSVVTYNVLID---ILGRAGKVHE 1001



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 119/447 (26%), Positives = 194/447 (43%), Gaps = 53/447 (11%)

Query: 85  KALH----FFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTV-------WTLVHRMKSLS 133
           K LH    FF        Y+H+  ++   I   A  ++   V       W   HR+    
Sbjct: 160 KDLHLAKCFFTWAGQQDGYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHL 219

Query: 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
           L    +TF        S      A++IF  M   GC  S N +N +L+LL K      A 
Sbjct: 220 LTSLLRTFG-------STNNVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAV 272

Query: 194 NLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
            +F K+ + + + D  ++ +  + +    R + A E ++EM+  G++P + T+ +++   
Sbjct: 273 IVFGKLGQFRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDAL 332

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
            ++G I+EA +FF  MK  +C  +VVTYTT+V+G    G ++ A  VF  M      P  
Sbjct: 333 VKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDA 392

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
             YN +I  L K    + A  +F+EM  +G +PN  TYN++I  L   G    A +    
Sbjct: 393 IAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHD 452

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM--GSGVCLPNLD------------ 418
           +K+    P+V TYN LI      G++++ L + ++M    G C+ + D            
Sbjct: 453 LKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGA 512

Query: 419 -----------------TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
                            TYN L+S+       D+   A KLL  M     +P   T+  +
Sbjct: 513 DRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDE---AVKLLEVMKKHECIPTVVTYTTL 569

Query: 462 LNGLLLIGNQGLAKEILRLQSRCGRLP 488
           ++GL   G    A  +LR   + G  P
Sbjct: 570 VDGLGKAGRLDEAVSLLREMEKQGCEP 596



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 168/350 (48%), Gaps = 6/350 (1%)

Query: 86   ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRT--VWTLVHRMKSLSLGPTQKTFAI 143
            AL  FN L         P +F + I +   ++  R      LV  MK+ ++ P   T+  
Sbjct: 687  ALQIFNELQESSLV---PDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTS 743

Query: 144  IAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGK 202
            + +    +G+ + A  +F  M E G    + ++ +++D+L K  K+  A  +F+   + +
Sbjct: 744  LLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKR 803

Query: 203  FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262
               DV++Y+ + +      R  +A    +  + +G  PN+  Y+ ++  + + G ++ A 
Sbjct: 804  CVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRAL 863

Query: 263  RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322
              F EM++R+C  ++VTY  ++ G    G +  A  + + M   G +P + TYN +I  +
Sbjct: 864  ELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGV 923

Query: 323  CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
             K   V+ A   F+ M  KG +P+  T+  +I  L    ++  A E    M+++   P+V
Sbjct: 924  GKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSV 983

Query: 383  QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
             TYN+LI     AG++     +F +M    C+P+  T  I+   + VR++
Sbjct: 984  VTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMPDGITIGIMKRILSVREQ 1033



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/386 (23%), Positives = 173/386 (44%), Gaps = 38/386 (9%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG--CRQSLNS----- 175
           W L H +K     P   T+  + +     G+ D+ + I   M E G  C  S +S     
Sbjct: 447 WQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHE 506

Query: 176 ------------------------FNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISY 210
                                   +NT++        V++A  L +V +  +    V++Y
Sbjct: 507 GTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTY 566

Query: 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
             + +G     R ++A+ +L+EM  +G  P++ TY+ ++  +++  Q EE+   F EM +
Sbjct: 567 TTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVR 626

Query: 271 RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
           + C  DV TY+ +++      ++ +A +VF  M   G+ P +  Y  ++  L K + ++ 
Sbjct: 627 KGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDF 686

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           A+ +F E+     +P++  YN+++ GL  +  ++ A + V  MK+    P++ TY  L+ 
Sbjct: 687 ALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLD 746

Query: 391 YFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450
               +G +E    +F KM      P++  Y  L   M V  K   L  A  +   M  + 
Sbjct: 747 GLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSL---MDVLGKGGKLSHALIIFRAMAKKR 803

Query: 451 FMPRKFTFNRVLNGLLLIGNQGLAKE 476
            +P   T++ +++ L   G +G  +E
Sbjct: 804 CVPDVVTYSSLIDSL---GKEGRVEE 826



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 123/290 (42%), Gaps = 38/290 (13%)

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           G +  + TY +++K    A + +   +    M K    I +   T+++  FG    +  A
Sbjct: 177 GYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNVSGA 236

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF--------------------- 335
             +F+ M + G  PS   YN ++++L K     +A++VF                     
Sbjct: 237 LEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHS 296

Query: 336 --------------EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
                         +EM+  G  P   T+ V+I  L  +G ++ A +F   MK+  C PN
Sbjct: 297 FNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPN 356

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
           V TY  L+     AG +E   E+F +M    C P+   YN LI  +    ++D   +A  
Sbjct: 357 VVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEAD---MACG 413

Query: 442 LLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           L  EM DRG +P   T+N +++ L   G Q  A ++       G +P  F
Sbjct: 414 LFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVF 463


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 124/472 (26%), Positives = 219/472 (46%), Gaps = 17/472 (3%)

Query: 23  SPLTTTSPA-PLPPAAADPAALASL------ILTSTDPRTLTQTLHCPSLHWTPQLVDQI 75
           SP++TT+ A PL P   + +A +S       + +S  P  ++QTL   +LH +PQ+V   
Sbjct: 29  SPVSTTNLASPLTPHFLEQSARSSQWHFIKQVESSLTPSLISQTLL--NLHESPQVVLDF 86

Query: 76  IKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLA---ARLRDYRTVWTLVHRMKSL 132
           +   ++H L       +         SP    H +  A         R ++  +   +  
Sbjct: 87  LNH-FHHKLSDARTLCLAIVIVARLPSPKPALHLLRQALGGGTTNSIREIFEFLAASRDR 145

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
               +   F  + +      +AD A + F +M E G   ++ + N++L L  K  + E A
Sbjct: 146 LGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAA 205

Query: 193 YNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
           + L+ ++FR + K+ V ++N++ N  C   +  KA + +  M   G+ PN+ TYN ++ G
Sbjct: 206 WVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHG 265

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
           Y  +G++E A      MK++K E D  TY +++ G    G ++ A  +F+ MV  G+ PS
Sbjct: 266 YCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPS 325

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
              YN +I   C K +++ A    +EM+ KG  P  +TYN +I  L      + A   + 
Sbjct: 326 AVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIK 385

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
            +++    P+  TYNILI  +C     ++   L ++M +    P   TY  L   + V  
Sbjct: 386 EIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSL---LHVLS 442

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           K + +  A  L  ++   G +P    FN +++G     N   A E+L+   R
Sbjct: 443 KKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDR 494



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 194/385 (50%), Gaps = 4/385 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  I++  +    +     V  M++  + P   T+  I   Y S+G+ + A  I  +M
Sbjct: 223 TFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTM 282

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
                     ++ +++  +CK+ ++E+A  +F+    K  +   + YN + +G+C     
Sbjct: 283 KRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNL 342

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A     EM+ +G++P ++TYN ++   F   + +EA     E++++    D +TY  +
Sbjct: 343 DMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNIL 402

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++G+      K+A  + D M+  G+ P+  TY +++ VL KK+ ++ A  +F+++  +G 
Sbjct: 403 INGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGV 462

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
           +P++  +N +I G C    ++ A E +  M   +  P+  T+N +++  C  G++E   E
Sbjct: 463 LPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARE 522

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           LF++M      P+  ++N LIS    R    D+  A ++  EM+D GF P   T+N ++ 
Sbjct: 523 LFDEMKRRGIKPDHISFNTLISGYSRR---GDIKDAFRVRNEMLDTGFNPTVLTYNALVQ 579

Query: 464 GLLLIGNQGLAKEILRLQSRCGRLP 488
           GL       LA+E+L+     G  P
Sbjct: 580 GLCKNQEGDLAEELLKEMVSKGMTP 604



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 137/255 (53%), Gaps = 4/255 (1%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           +S  HA+ +  R  +      ++  ++   + P   T+ I+   Y     A +A  +   
Sbjct: 365 NSLIHALFMEQRTDE---AECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDE 421

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKR 222
           M   G + +  ++ ++L +L K+ ++++A +LFK    +    D I +N + +G C    
Sbjct: 422 MLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSN 481

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
              A E+LK+M    + P+  T+N +++G+ R G++EEA   F EMK+R  + D +++ T
Sbjct: 482 VKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNT 541

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++ G+   G+IK A  V + M++ G  P+V TYNA++Q LCK    + A  + +EMV KG
Sbjct: 542 LISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKG 601

Query: 343 YMPNSTTYNVVIRGL 357
             P+ TTY  +I G+
Sbjct: 602 MTPDDTTYFTLIEGI 616



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 148/328 (45%), Gaps = 3/328 (0%)

Query: 103 PSSFDHAIDLAARLRDYR--TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P SF +   ++   +  R      +   M    L P+   +  + + + + G  D A   
Sbjct: 289 PDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAY 348

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCL 219
              M + G   +++++N+++  L  E++ ++A  + K  + K    D I+YN++ NG+C 
Sbjct: 349 KDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCR 408

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
                KA  +  EM+  G+ P   TY  +L    +  +++EA   F ++       D + 
Sbjct: 409 CANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIM 468

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           +  ++ G      +K A  +   M    V P   T+N ++Q  C++  VE A  +F+EM 
Sbjct: 469 FNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMK 528

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            +G  P+  ++N +I G    G+++ A      M D    P V TYN L++  C   E +
Sbjct: 529 RRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGD 588

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSM 427
              EL ++M S    P+  TY  LI  +
Sbjct: 589 LAEELLKEMVSKGMTPDDTTYFTLIEGI 616



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 101/221 (45%), Gaps = 1/221 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  I+   R  + +  + L   M +  + PT+KT+  +        +   A  +F  +
Sbjct: 398 TYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKI 457

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRT 223
              G       FN ++D  C    V+ A+ L K + R K   D +++N I  G C   + 
Sbjct: 458 TSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKV 517

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A E+  EM  RG+ P+  ++N ++ GY R G I++A+R   EM        V+TY  +
Sbjct: 518 EEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNAL 577

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
           V G     E   A  +   MV+ G+ P   TY  +I+ + K
Sbjct: 578 VQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAK 618



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 4/188 (2%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           +S  H +    R+++      L  ++ S  + P    F  + + + S      A ++   
Sbjct: 435 TSLLHVLSKKNRMKE---ADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKD 491

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKR 222
           M          +FNTI+   C+E KVE+A  LF ++ R   K D IS+N + +G+     
Sbjct: 492 MDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGD 551

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
              A  V  EM+D G NP + TYN +++G  +  + + A     EM  +    D  TY T
Sbjct: 552 IKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFT 611

Query: 283 IVHGFGVV 290
           ++ G   V
Sbjct: 612 LIEGIAKV 619


>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
          Length = 645

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 177/371 (47%), Gaps = 9/371 (2%)

Query: 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ 171
           L AR R       ++  M      PT   + +  E    A     AV +   +H  GC  
Sbjct: 121 LCARGR-IADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFRGAVGVLRDLHGRGCAL 179

Query: 172 SLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF--KADVISYNVIANGWCLVKRTNKALEV 229
            + + N +L  +C +  V++A  L +     F  + DV+SYN +  G C+ +R     ++
Sbjct: 180 DVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLCMARRWGHVQDL 239

Query: 230 LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289
           ++EMV  G  PN+ T++ ++    R G  E       +M +  C  DV  Y TI+ G   
Sbjct: 240 MEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCK 299

Query: 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
              ++ AR + + M + G+ P+V  YN +++ LC  D  E A  +  EM  K    +  T
Sbjct: 300 EERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVT 359

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
           +N+++  LC  G ++R +E + +M +  C P+V TY  +I  FC  G I+  + L   M 
Sbjct: 360 FNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMA 419

Query: 410 SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
           +  C PN  +Y I++  +   ++  D   A +L+ +M+ +G  P   TFN ++N    + 
Sbjct: 420 ACGCRPNTVSYTIVLKGLCSAERWVD---AEELMSQMIQQGCPPNPVTFNTLIN---FLC 473

Query: 470 NQGLAKEILRL 480
            +GL ++ + L
Sbjct: 474 KKGLVEQAIEL 484



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 151/303 (49%), Gaps = 4/303 (1%)

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKR 222
           M   GC  ++ +F+T++  LC+    E+ + +  ++       DV  Y  I +G C  +R
Sbjct: 243 MVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEER 302

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
              A  +L  M   GL+PN+  YN +LKG   A + EEA     EM  + C +D VT+  
Sbjct: 303 LEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNI 362

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           +V      G + R   V + M+  G +P V TY  +I   CK+  ++ A+++   M   G
Sbjct: 363 LVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACG 422

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
             PN+ +Y +V++GLC       A E + +M    C PN  T+N LI + C  G +E+ +
Sbjct: 423 CRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAI 482

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           EL ++M    C P+L +Y+ +I  +     +D+ L   +LL  MV +G  P    ++ + 
Sbjct: 483 ELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEAL---ELLNVMVKKGMSPNTIIYSSIA 539

Query: 463 NGL 465
           + L
Sbjct: 540 SAL 542



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 107/420 (25%), Positives = 186/420 (44%), Gaps = 41/420 (9%)

Query: 97  PTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKA 154
           P++   P   S++  +      R +  V  L+  M +    P   TF+ +       G  
Sbjct: 209 PSFGCEPDVVSYNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLF 268

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA------------------YN-- 194
           +R  ++   M EHGC   +  + TI+D +CKE+++E A                  YN  
Sbjct: 269 ERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTL 328

Query: 195 ----------------LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
                           L ++F      D +++N++ +  C     ++ +EVL++M++ G 
Sbjct: 329 LKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGC 388

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
            P++ TY  V+ G+ + G I+EA      M    C  + V+YT ++ G         A  
Sbjct: 389 MPDVITYTTVINGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEE 448

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
           +   M+  G  P+  T+N +I  LCKK  VE AI + ++M+  G  P+  +Y+ VI GL 
Sbjct: 449 LMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLG 508

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLD 418
             G  + ALE +  M      PN   Y+ +       G I + +++FE +       +  
Sbjct: 509 KAGNTDEALELLNVMVKKGMSPNTIIYSSIASALSGEGRINKVIQMFENIQDTTVRSDAV 568

Query: 419 TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
            YN +ISS+  R ++D  +   + L  MV  G +P + T+  ++ GL   G    A+EIL
Sbjct: 569 LYNAVISSLCKRGETDRAI---EFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEIL 625



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 152/323 (47%), Gaps = 3/323 (0%)

Query: 91  NILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERY 148
            IL+  P+Y  SP+   ++  +        +     L+  M          TF I+ +  
Sbjct: 308 GILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILVDFL 367

Query: 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADV 207
              G  DR +++   M EHGC   + ++ T+++  CKE  +++A  L +       + + 
Sbjct: 368 CQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACGCRPNT 427

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           +SY ++  G C  +R   A E++ +M+ +G  PN  T+N ++    + G +E+A     +
Sbjct: 428 VSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQ 487

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M    C  D+++Y+T++ G G  G    A  + + MV  G+ P+   Y+++   L  +  
Sbjct: 488 MLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSIASALSGEGR 547

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
           +   I +FE +       ++  YN VI  LC  GE +RA+EF+  M    C PN  TY I
Sbjct: 548 INKVIQMFENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEFLAYMVSSGCVPNESTYTI 607

Query: 388 LIRYFCDAGEIERGLELFEKMGS 410
           LIR     G ++   E+  ++ S
Sbjct: 608 LIRGLASEGFVKEAQEILTELCS 630



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 128/316 (40%), Gaps = 39/316 (12%)

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA------------- 255
           +Y  +    C   R   AL VL +M  RG  P    Y++ L+   RA             
Sbjct: 113 TYFPLVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFRGAVGVLRDL 172

Query: 256 ----------------------GQIEEAWRFFLEMKKR-KCEIDVVTYTTIVHGFGVVGE 292
                                 G ++EA R   ++     CE DVV+Y  ++ G  +   
Sbjct: 173 HGRGCALDVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLCMARR 232

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
               +++ + MV  G  P++ T++ +I  LC+    E    V  +M   G  P+   Y  
Sbjct: 233 WGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYAT 292

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           +I G+C    +E A   + RM      PNV  YN L++  C A   E    L  +M    
Sbjct: 293 IIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKD 352

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
           C  +  T+NIL+  +      D ++   ++L +M++ G MP   T+  V+NG    G   
Sbjct: 353 CPLDDVTFNILVDFLCQNGLVDRVI---EVLEQMLEHGCMPDVITYTTVINGFCKEGLID 409

Query: 473 LAKEILRLQSRCGRLP 488
            A  +LR  + CG  P
Sbjct: 410 EAVMLLRSMAACGCRP 425



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 108/221 (48%), Gaps = 1/221 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M +    P   ++ I+ +   SA +   A ++   M + GC  +  +FNT+++ LC
Sbjct: 414 LLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLC 473

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K+  VE+A  L K +       D+ISY+ + +G      T++ALE+L  MV +G++PN  
Sbjct: 474 KKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTI 533

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            Y+ +       G+I +  + F  ++      D V Y  ++      GE  RA      M
Sbjct: 534 IYSSIASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEFLAYM 593

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
           V+ G +P+ +TY  +I+ L  +  V+ A  +  E+  KG +
Sbjct: 594 VSSGCVPNESTYTILIRGLASEGFVKEAQEILTELCSKGAL 634



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 76/159 (47%), Gaps = 4/159 (2%)

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           V P+  TY  +++ LC +  + +A+ V ++M  +G  P    Y+V +   C       A+
Sbjct: 107 VAPNAYTYFPLVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFRGAV 166

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF-EKMGSGVCLPNLDTYNILISS 426
             +  +    C  +V   N++++  CD G ++  + L  + + S  C P++ +YN ++  
Sbjct: 167 GVLRDLHGRGCALDVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRG 226

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           + + ++   +     L+ EMV  G  P   TF+ ++  L
Sbjct: 227 LCMARRWGHV---QDLMEEMVAAGCPPNIVTFSTLIGHL 262


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 101/361 (27%), Positives = 179/361 (49%), Gaps = 4/361 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           +   ID   + R       L   M +  + P   T++ +     + G+   A ++   M 
Sbjct: 243 YSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDML 302

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTN 224
           E     ++ +FN+++D   KE K+ +A  LF ++ +     ++++YN + NG+C+  R +
Sbjct: 303 ERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLD 362

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           +A ++   MV +   P++ TYN ++ G+ +A ++ +    F +M +R    + VTYTT++
Sbjct: 363 EAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLI 422

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
           HGF    +   A+ VF  MV+ GV P++ TYN ++  LCK   +E A++VFE +      
Sbjct: 423 HGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKME 482

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           P+  TYN++  G+C  G++E   +    +     +P+V  YN +I  FC  G  E    L
Sbjct: 483 PDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTL 542

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           F KM     LP+  TYN LI +     +  D   + +L+ EM    F     T+  V + 
Sbjct: 543 FIKMKEDGPLPDSGTYNTLIRAHL---RDGDKAASAELIKEMRSCRFAGDASTYGLVTDM 599

Query: 465 L 465
           L
Sbjct: 600 L 600



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 103/393 (26%), Positives = 181/393 (46%), Gaps = 42/393 (10%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            LV +M  +   P   TF  +        KA  AV +   M   GC+  L ++  +++ L
Sbjct: 156 ALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGL 215

Query: 184 CKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CK  + + A NL  K+ +GK +ADV+ Y+ + +  C  +  + AL +  EM ++G+ P++
Sbjct: 216 CKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDV 275

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TY+ ++      G+  +A R   +M +RK   +VVT+ +++  F   G++  A  +FD 
Sbjct: 276 FTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDE 335

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M+   + P++ TYN++I   C  D ++ A  +F  MV K  +P+  TYN +I G C   +
Sbjct: 336 MIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKK 395

Query: 363 MERALE---------FVG--------------------------RMKDDECEPNVQTYNI 387
           +   +E          VG                          +M  D   PN+ TYN 
Sbjct: 396 VVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNT 455

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           L+   C  G++E+ + +FE +      P++ TYNI+   M    K +D      L   + 
Sbjct: 456 LLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVED---GWDLFCSLS 512

Query: 448 DRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
            +G  P    +N +++G      +GL +E   L
Sbjct: 513 LKGVKPDVIAYNTMISGFC---KKGLKEEAYTL 542



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 104/381 (27%), Positives = 184/381 (48%), Gaps = 17/381 (4%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
            D A+DL   +   R   ++V   K LS     K F ++    +S G+          M 
Sbjct: 46  LDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLV----ISFGE---------KME 92

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTN 224
             G   +L ++N +++ LC+  ++  A  +  K+ +  +   +++ N + NG+C   R +
Sbjct: 93  ILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRIS 152

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           +A+ ++ +MV+ G  P+  T+  ++ G F+  +  EA      M  + C+ D+VTY  ++
Sbjct: 153 EAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVI 212

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
           +G    GE   A N+ + M  G +   V  Y+ +I  LCK   V++A+ +F EM  KG  
Sbjct: 213 NGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIR 272

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           P+  TY+ +I  LC+ G    A   +  M + +  PNV T+N LI  F   G++    +L
Sbjct: 273 PDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKL 332

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           F++M      PN+ TYN LI+   +  + D+   A ++   MV +  +P   T+N ++NG
Sbjct: 333 FDEMIQRSIDPNIVTYNSLINGFCMHDRLDE---AQQIFTLMVSKDCLPDVVTYNTLING 389

Query: 465 LLLIGNQGLAKEILRLQSRCG 485
                      E+ R  SR G
Sbjct: 390 FCKAKKVVDGMELFRDMSRRG 410



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 155/341 (45%), Gaps = 12/341 (3%)

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-----DV 207
           K D AV +F  M +     S+  F+ +L  + K KK    ++L   F  K +      ++
Sbjct: 45  KLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKK----FDLVISFGEKMEILGVSHNL 100

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
            +YN++ N  C   + + AL +L +M+  G  P++ T N +L G+    +I EA     +
Sbjct: 101 YTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQ 160

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M +   + D VT+TT+VHG     +   A  + + MV  G  P + TY A+I  LCK+  
Sbjct: 161 MVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGE 220

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
            + A+ +  +M       +   Y+ VI  LC    ++ AL     M +    P+V TY+ 
Sbjct: 221 PDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSS 280

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           LI   C+ G       L   M      PN+ T+N LI +     K   L+ A KL  EM+
Sbjct: 281 LISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAF---AKEGKLIEAEKLFDEMI 337

Query: 448 DRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            R   P   T+N ++NG  +      A++I  L      LP
Sbjct: 338 QRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLP 378


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/380 (27%), Positives = 178/380 (46%), Gaps = 7/380 (1%)

Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           A S ++  H +  A +L +    W    RM+     PT +T+ ++      +G+   A+ 
Sbjct: 255 AVSYTNLIHGLCEAGKLHEALEFWA---RMREDGCFPTVRTYTVLVCALCESGRELEALS 311

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWC 218
           +F  M E GC  ++ ++  ++D LCKE ++++A  +      K  A  V+ +N +   +C
Sbjct: 312 LFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYC 371

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
                  A+ VL  M  + + PN+ TYN ++ G+ R   ++ A     +M + K   DVV
Sbjct: 372 KRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVV 431

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TY T++HG   VG +  A  +F  M+  G  P   T+NA +  LC+   V  A  + E +
Sbjct: 432 TYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESL 491

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
             K    N   Y  +I G C  G++E A     RM  +EC PN  T+N++I      G++
Sbjct: 492 KEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKV 551

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           +  + L E M      P L TYNIL+  +    K  D   A ++L  ++  G+ P   T+
Sbjct: 552 QDAMLLVEDMAKFDVKPTLHTYNILVEEVL---KEYDFDRANEILNRLISSGYQPNVVTY 608

Query: 459 NRVLNGLLLIGNQGLAKEIL 478
              +      G    A+E++
Sbjct: 609 TAFIKAYCSQGRLEEAEEMV 628



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 125/437 (28%), Positives = 197/437 (45%), Gaps = 20/437 (4%)

Query: 63  PSLH-WTPQLVDQIIKRLWN---HALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRD 118
           PSL    P L   ++  L+N     L AL+FF  +  H  + HS ++    + L  R R 
Sbjct: 42  PSLKTLIPSLTPSLLCSLFNLNPDPLTALNFFRWIRRHHNFPHSLATHHSLLLLLVRHRT 101

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
            R    + + M      P   TF +   R     + + A       H+   + SL S+N 
Sbjct: 102 LRAAENVRNSMIKSCTSPHDATFLLNLLR-----RMNTAAAAADHQHQLAFKLSLTSYNR 156

Query: 179 ILDLLCKEKKVEKAYNLFKVF----RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           +L  L +   V++  +L+K            ++I+ N + N +C +     A      ++
Sbjct: 157 LLMCLSRFSMVDEMISLYKEMLTDNGNSVFPNLITLNTMLNSYCKLGNMAVARLFFVRIL 216

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
                P+L TY  ++ GY R   +E A   F  M +R    + V+YT ++HG    G++ 
Sbjct: 217 RCEPGPDLFTYTSLVLGYCRNDDVERACGVFCVMPRR----NAVSYTNLIHGLCEAGKLH 272

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
            A   +  M   G  P+V TY  ++  LC+      A+ +F EM  +G  PN  TY V+I
Sbjct: 273 EALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTVLI 332

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
             LC  G M+ AL+ +  M +    P+V  +N LI  +C  G +E  + +   M S    
Sbjct: 333 DYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVC 392

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           PN+ TYN LI   F R KS D  +A  LL +MV+    P   T+N +++GL  +G    A
Sbjct: 393 PNVRTYNELICG-FCRGKSMDRAMA--LLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSA 449

Query: 475 KEILRLQSRCGRLPRQF 491
             + RL  R G  P Q+
Sbjct: 450 SRLFRLMIRDGFSPDQW 466



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 152/347 (43%), Gaps = 41/347 (11%)

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
           S+ P   T   +   Y   G    A   F+ +        L ++ +++   C+   VE+A
Sbjct: 184 SVFPNLITLNTMLNSYCKLGNMAVARLFFVRILRCEPGPDLFTYTSLVLGYCRNDDVERA 243

Query: 193 YNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
             +F V     + + +SY  + +G C   + ++ALE    M + G  P + TY +++   
Sbjct: 244 CGVFCVMP---RRNAVSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCAL 300

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
             +G+  EA   F EM++R CE +V TYT ++      G +  A  + + MV  GV PSV
Sbjct: 301 CESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSV 360

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
             +NA+I   CK+  +E+A+ V   M  K   PN  TYN +I G C    M+RA+  + +
Sbjct: 361 VPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNK 420

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           M + +  P+V TYN LI   C+ G ++    LF                           
Sbjct: 421 MVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRL------------------------- 455

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
                        M+  GF P ++TFN  +  L  +G  G A +IL 
Sbjct: 456 -------------MIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILE 489



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/373 (23%), Positives = 170/373 (45%), Gaps = 27/373 (7%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M+S  + P  +T+  +   +      DRA+ +   M E      + ++NT++  LC+   
Sbjct: 386 MESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGV 445

Query: 189 VEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           V+ A  LF++  R  F  D  ++N      C + R  +A ++L+ + ++ +  N   Y  
Sbjct: 446 VDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTA 505

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ GY +AG+IE A   F  M   +C  + +T+  ++ G    G+++ A  + + M    
Sbjct: 506 LIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFD 565

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           V P++ TYN +++ + K+   + A  +   ++  GY PN  TY   I+  C  G +E A 
Sbjct: 566 VKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAE 625

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           E V ++K++    +   YN+LI  +   G ++    +  +M    C P+  TY+IL+  +
Sbjct: 626 EMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTYSILMKHL 685

Query: 428 FVRKKSD--------------------------DLLVAGKLLIEMVDRGFMPRKFTFNRV 461
            + K                             D  +   L  +M + G +P   T++++
Sbjct: 686 VIEKHKKEGSNPVGLDVSLTNISVDNTDIWSKIDFGITTVLFEKMAECGCVPNLNTYSKL 745

Query: 462 LNGLLLIGNQGLA 474
           +NGL  +G   +A
Sbjct: 746 INGLCKVGRLNVA 758



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 167/344 (48%), Gaps = 4/344 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           +++ M    + P+   F  +   Y   G  + AV +   M       ++ ++N ++   C
Sbjct: 347 MLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFC 406

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           + K +++A  L  K+   K   DV++YN + +G C V   + A  + + M+  G +P+  
Sbjct: 407 RGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQW 466

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           T+N  +    R G++ EA +    +K++  + +   YT ++ G+   G+I+ A ++F  M
Sbjct: 467 TFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRM 526

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           +    LP+  T+N MI  L K+  V++A+L+ E+M      P   TYN+++  +    + 
Sbjct: 527 LAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDF 586

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           +RA E + R+     +PNV TY   I+ +C  G +E   E+  K+ +   L +   YN+L
Sbjct: 587 DRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLL 646

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467
           I++       D    A  +L  M   G  P   T++ ++  L++
Sbjct: 647 INAYGCMGLLDS---AFGVLRRMFGTGCEPSYLTYSILMKHLVI 687



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 92/391 (23%), Positives = 171/391 (43%), Gaps = 33/391 (8%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++  +K   +   +  +  + + Y  AGK + A  +F  M    C  +  +FN ++D L 
Sbjct: 487 ILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLR 546

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           KE KV+ A  L + + +   K  + +YN++          ++A E+L  ++  G  PN+ 
Sbjct: 547 KEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVV 606

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY   +K Y   G++EEA    +++K     +D   Y  +++ +G +G +  A  V   M
Sbjct: 607 TYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRM 666

Query: 304 VNGGVLPSVATYNAMIQVLC----KKD--------------SVENA-----------ILV 334
              G  PS  TY+ +++ L     KK+              SV+N             ++
Sbjct: 667 FGTGCEPSYLTYSILMKHLVIEKHKKEGSNPVGLDVSLTNISVDNTDIWSKIDFGITTVL 726

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
           FE+M   G +PN  TY+ +I GLC  G +  A      M++    P+   +N L+   C 
Sbjct: 727 FEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCCK 786

Query: 395 AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
            G     + L + M     L +L++Y +LI  +F +   +    A  +   ++  G+   
Sbjct: 787 LGMFGEAVTLLDSMMECSHLAHLESYKLLICGLFEQMNKEK---AEAVFCSLLRCGYNYD 843

Query: 455 KFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
           +  +  +++GL   G      E+L L  + G
Sbjct: 844 EVAWKVLIDGLAKTGYVDQCSELLNLMEKNG 874



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/353 (20%), Positives = 145/353 (41%), Gaps = 30/353 (8%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  ID   +    +    LV  M    + PT  T+ I+ E  +     DRA +I   +
Sbjct: 537 TFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRL 596

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNL-FKVFRGKFKADVISYNVIANGWCLVKRT 223
              G + ++ ++   +   C + ++E+A  +  K+       D   YN++ N +  +   
Sbjct: 597 ISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLL 656

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA--------------------WR 263
           + A  VL+ M   G  P+  TY+I++K        +E                     W 
Sbjct: 657 DSAFGVLRRMFGTGCEPSYLTYSILMKHLVIEKHKKEGSNPVGLDVSLTNISVDNTDIWS 716

Query: 264 ---------FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
                     F +M +  C  ++ TY+ +++G   VG +  A +++  M  GG+ PS   
Sbjct: 717 KIDFGITTVLFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEII 776

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           +N+++   CK      A+ + + M+   ++ +  +Y ++I GL      E+A      + 
Sbjct: 777 HNSLLSSCCKLGMFGEAVTLLDSMMECSHLAHLESYKLLICGLFEQMNKEKAEAVFCSLL 836

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
                 +   + +LI      G +++  EL   M    C  + +TY++L+  +
Sbjct: 837 RCGYNYDEVAWKVLIDGLAKTGYVDQCSELLNLMEKNGCRLHPETYSMLMQEL 889



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/331 (20%), Positives = 148/331 (44%), Gaps = 14/331 (4%)

Query: 63  PSLHWTPQLVDQIIKRL-WNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRT 121
           P+LH    LV++++K   ++ A + L+      Y P    + ++F  A     RL +   
Sbjct: 568 PTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVV-TYTAFIKAYCSQGRLEEAEE 626

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
              +V ++K+  +      + ++   Y   G  D A  +   M   GC  S  +++ ++ 
Sbjct: 627 ---MVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTYSILMK 683

Query: 182 LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALE--VLKEMVDRGLN 239
            L  EK  ++  N           DV   N+  +   +  + +  +   + ++M + G  
Sbjct: 684 HLVIEKHKKEGSN-------PVGLDVSLTNISVDNTDIWSKIDFGITTVLFEKMAECGCV 736

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           PNL TY+ ++ G  + G++  A+  +  M++       + + +++     +G    A  +
Sbjct: 737 PNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCCKLGMFGEAVTL 796

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
            D M+    L  + +Y  +I  L ++ + E A  VF  ++  GY  +   + V+I GL  
Sbjct: 797 LDSMMECSHLAHLESYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYDEVAWKVLIDGLAK 856

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           TG +++  E +  M+ + C  + +TY++L++
Sbjct: 857 TGYVDQCSELLNLMEKNGCRLHPETYSMLMQ 887


>gi|388521091|gb|AFK48607.1| unknown [Medicago truncatula]
          Length = 506

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 115/426 (26%), Positives = 204/426 (47%), Gaps = 43/426 (10%)

Query: 86  ALHFFN-ILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII 144
           A+  FN +L  +PT   +   F+  +    + + Y TV +L  +M+   + P   TF I+
Sbjct: 52  AVSLFNSLLHQNPTL--TAFEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPNFVTFNIL 109

Query: 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKF 203
              +   G    A  +   + + G    + + NT +   C + ++ +A N   K+    F
Sbjct: 110 INCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIHQALNFHDKLVALGF 169

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLK-------------------------------- 231
             D +SY  + NG C V  T  AL++L+                                
Sbjct: 170 HLDQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMYNTVIDGMSKDKHVNDAFD 229

Query: 232 ---EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
              EMV + ++P++ TY+ +++G+F  G++++A   F +M     + DV T+  +V GF 
Sbjct: 230 LYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFC 289

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G +K+A+NV D M+   + P+V+T+N ++   CK   ++    VF  M+ +G  PN  
Sbjct: 290 KEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVV 349

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           TY  ++ G C   ++ +A +    M       NV +YNI+I  FC   ++++ ++LF +M
Sbjct: 350 TYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAMKLFIEM 409

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL- 467
                +P++ TYN LI  +    KS  +  A +L+ EM DRG  P   T+N +LN LL  
Sbjct: 410 HHKHIIPDVVTYNSLIDGLC---KSGKISYAFQLVNEMHDRGQPPNIITYNSILNALLTK 466

Query: 468 IGNQGL 473
           + +QG+
Sbjct: 467 LKDQGI 472



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 133/245 (54%), Gaps = 24/245 (9%)

Query: 188 KVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
           K++ A +LF K+     K DV ++N++ +G+C   R  KA  VL  M+ + + PN++T+N
Sbjct: 258 KLKDAIDLFNKMILENIKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFN 317

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
            ++ G+ +  +++E    F  M K+  + +VVTY +++ G+ +V ++ +A+ +F+ M   
Sbjct: 318 TLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQR 377

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           GV  +V +YN MI   CK   V+ A+ +F EM  K  +P+  TYN +I GLC +G++  A
Sbjct: 378 GVTANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYA 437

Query: 367 LEFVGRM-----------------------KDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            + V  M                       KD   +PN+ T  ILI+  C +G++E   +
Sbjct: 438 FQLVNEMHDRGQPPNIITYNSILNALLTKLKDQGIQPNMHTDTILIKGLCQSGKLEAARK 497

Query: 404 LFEKM 408
           +FE +
Sbjct: 498 VFEDL 502



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 134/254 (52%), Gaps = 27/254 (10%)

Query: 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ 171
           +  +L+D      L ++M   ++ P   TF I+ + +   G+  +A  +   M     + 
Sbjct: 255 IVGKLKD---AIDLFNKMILENIKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKP 311

Query: 172 SLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVL 230
           ++++FNT++D  CK++K+++   +F +  +   K +V++Y  + +G+CLVK+ NKA ++ 
Sbjct: 312 NVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIF 371

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
             M  RG+  N+ +YNI++ G+ +  ++++A + F+EM  +    DVVTY +++ G    
Sbjct: 372 NTMSQRGVTANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKS 431

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNA-----------------------MIQVLCKKDS 327
           G+I  A  + + M + G  P++ TYN+                       +I+ LC+   
Sbjct: 432 GKISYAFQLVNEMHDRGQPPNIITYNSILNALLTKLKDQGIQPNMHTDTILIKGLCQSGK 491

Query: 328 VENAILVFEEMVGK 341
           +E A  VFE+++ K
Sbjct: 492 LEAARKVFEDLLVK 505



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/229 (20%), Positives = 95/229 (41%), Gaps = 39/229 (17%)

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
           + + Y++I   F    ++  A ++F+ +++     +   +N ++  L K       + + 
Sbjct: 33  NFIPYSSISTTFHS-NDVDGAVSLFNSLLHQNPTLTAFEFNKILGSLVKSKHYHTVLSLS 91

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
           ++M  +G  PN  T+N++I   C  G +  A   + ++     EP++ T N  I+ FC  
Sbjct: 92  QQMEFEGINPNFVTFNILINCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLK 151

Query: 396 GEIERGLELFEKMGS---------------GVC------------------LPNLDT--Y 420
           G+I + L   +K+ +               G+C                  L  L+   Y
Sbjct: 152 GQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMY 211

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
           N +I  M   K  +D   A  L  EMV +   P   T++ ++ G  ++G
Sbjct: 212 NTVIDGMSKDKHVND---AFDLYSEMVAKRISPDVVTYSALIRGFFIVG 257



 Score = 45.8 bits (107), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 67/154 (43%), Gaps = 3/154 (1%)

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
           + V+ A+ +F  ++ +     +  +N ++  L  +      L    +M+ +   PN  T+
Sbjct: 47  NDVDGAVSLFNSLLHQNPTLTAFEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPNFVTF 106

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           NILI  FC  G I     +  K+      P++ T N  I    ++ +    L     L+ 
Sbjct: 107 NILINCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIHQALNFHDKLVA 166

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           +   GF   + ++  ++NGL  +G    A ++LR
Sbjct: 167 L---GFHLDQVSYGTLINGLCKVGETRAALQLLR 197


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 133/481 (27%), Positives = 223/481 (46%), Gaps = 36/481 (7%)

Query: 25  LTTTSPAPLPPAAADPAALASLILT-----STDPRTLTQTLH-------CPSLHWTPQLV 72
           L   + AP   A     ALA  +       +  PR L+ T H       C +    P+L 
Sbjct: 75  LAALARAPSSAACGSGPALAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELA 134

Query: 73  DQIIKRLWNHALKALHFFNILSYHPTYAHSPSS-FDHAIDLAARLRDYRTVWTLVHRMKS 131
                +L    L+      I++ H       +   D A+D+            L+HR   
Sbjct: 135 LAFFGQLLRTGLRVDI---IIANHLLKGFCEAKRTDEALDI------------LLHRTPE 179

Query: 132 LSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG--CRQSLNSFNTILDLLCKEKKV 189
           L   P   +++I+ +     GK+ +A  +   M E G  C   + ++ T++D   KE  V
Sbjct: 180 LGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDV 239

Query: 190 EKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
            KA +LFK  V RG    D+++Y+ + +  C  +   KA   L++MV++G+ P+  TYN 
Sbjct: 240 NKACDLFKEMVQRG-IPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNN 298

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ GY   GQ +EA R F EM++     DVVT   ++      G+IK AR+VFD M   G
Sbjct: 299 LIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKG 358

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
             P V +Y  M+     K  + +   +F+ M+G G  P+  T++V+I+   + G +++A+
Sbjct: 359 QNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAM 418

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
                M+D   +P+V TY  +I   C  G+++  +E F +M      P+   Y+ LI   
Sbjct: 419 IIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQG- 477

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
           F    S  LL A +L++E+++ G       F+ ++N L  +G    A+ I  L    G+ 
Sbjct: 478 FCTHGS--LLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQH 535

Query: 488 P 488
           P
Sbjct: 536 P 536



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 182/400 (45%), Gaps = 44/400 (11%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           SS  HA+    + R        + +M +  + P   T+  +   Y S G+   AV++F  
Sbjct: 262 SSVVHAL---CKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKE 318

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFK-ADVISYNVIANGW----C 218
           M  H     + + N ++  LCK  K+++A ++F     K +  DV SY ++ NG+    C
Sbjct: 319 MRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGC 378

Query: 219 LVKRTN-------------------------------KALEVLKEMVDRGLNPNLTTYNI 247
           LV  T+                               KA+ +  EM D G+ P++ TY  
Sbjct: 379 LVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTT 438

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           V+    R G++++A   F +M  +    D   Y  ++ GF   G + +A+ +   ++N G
Sbjct: 439 VIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNG 498

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           +   +  ++++I  LCK   + +A  +F+  V  G  P++  Y++++ G C  G+ME+AL
Sbjct: 499 MRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKAL 558

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
                M     EPNV  Y  L+  +C  G I+ GL LF +M      P+   YNI+I  +
Sbjct: 559 RVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 618

Query: 428 FVRKKSDDLLVAGKLLI-EMVDRGFMPRKFTFNRVLNGLL 466
           FV  ++    V  K+   EM + G    K T+N VL G  
Sbjct: 619 FVAGRT----VPAKVKFHEMTESGIAINKCTYNIVLRGFF 654



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 167/396 (42%), Gaps = 49/396 (12%)

Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHR------MKSLSLGPTQKTFAIIAERYVSAGK 153
             +P  F + I     L  Y T   LV        M    + P   TF+++ + Y + G 
Sbjct: 358 GQNPDVFSYKI----MLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGM 413

Query: 154 ADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVI 213
            D+A+ IF  M +HG                                   K DV++Y  +
Sbjct: 414 LDKAMIIFNEMRDHG----------------------------------VKPDVVTYTTV 439

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
               C + + + A+E   +M+D+G+ P+   Y+ +++G+   G + +A    LE+     
Sbjct: 440 IAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGM 499

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
            +D+V +++I++    +G I  A+N+FD  VN G  P    Y+ ++   C    +E A+ 
Sbjct: 500 RLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALR 559

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           VF+ MV  G  PN   Y  ++ G C  G ++  L     M     +P+   YNI+I    
Sbjct: 560 VFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLF 619

Query: 394 DAGE-IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
            AG  +   ++  E   SG+ + N  TYNI++   F  +  D+ +    L  E+      
Sbjct: 620 VAGRTVPAKVKFHEMTESGIAI-NKCTYNIVLRGFFKNRCFDEAIF---LFKELRAMNVK 675

Query: 453 PRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
               T N ++ G+        AK++    SR G +P
Sbjct: 676 IDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVP 711



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 140/304 (46%), Gaps = 8/304 (2%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAA--RLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           KA+  FN +  H      P    +   +AA  R+          ++M    + P +  + 
Sbjct: 416 KAMIIFNEMRDHGV---KPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYH 472

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFR 200
            + + + + G   +A ++ L +  +G R  +  F++I++ LCK  ++  A N+F   V  
Sbjct: 473 CLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNV 532

Query: 201 GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
           G+   D + Y+++ +G+CLV +  KAL V   MV  G+ PN+  Y  ++ GY + G+I+E
Sbjct: 533 GQ-HPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDE 591

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
               F EM ++  +   + Y  I+ G  V G    A+  F  M   G+  +  TYN +++
Sbjct: 592 GLSLFREMLQKGIKPSTILYNIIIDGLFVAGRTVPAKVKFHEMTESGIAINKCTYNIVLR 651

Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
              K    + AI +F+E+       +  T N +I G+  T  +E A +    +      P
Sbjct: 652 GFFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVP 711

Query: 381 NVQT 384
            V T
Sbjct: 712 CVVT 715


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 125/479 (26%), Positives = 221/479 (46%), Gaps = 17/479 (3%)

Query: 23  SPLTTTSPA-PLPPAAADPAALASL------ILTSTDPRTLTQTLHCPSLHWTPQLVDQI 75
           SP++TT+ A PL P   + +A +S       + +S  P  ++QTL   +LH +PQ+V   
Sbjct: 29  SPVSTTNLASPLTPHFLEQSARSSQWHFIKQVESSLTPSLISQTLL--NLHESPQVVLDF 86

Query: 76  IKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLA---ARLRDYRTVWTLVHRMKSL 132
           +   ++H L       +         SP    H +  A         R ++  +   +  
Sbjct: 87  LNH-FHHKLSDARTLCLAIVIVARLPSPKPALHLLKQALGGGTTNSIREIFEFLAASRDR 145

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
               +   F  + +      +AD A + F +M E G   ++ + N++L L  K  + E A
Sbjct: 146 LGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAA 205

Query: 193 YNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
           + L+ ++FR + K+ V ++N++ N  C   +  KA + +  M   G+ PN+ TYN ++ G
Sbjct: 206 WVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHG 265

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
           Y  +G++E A      MK++K E D  TY +++ G    G ++ A  +F+ MV  G+ PS
Sbjct: 266 YCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPS 325

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
              YN +I   C K +++ A    +EM+ KG  P  +TYN +I  L      + A   + 
Sbjct: 326 AVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIK 385

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
            +++    P+  TYNILI  +C     ++   L ++M +    P   TY  L   + V  
Sbjct: 386 EIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSL---LHVLS 442

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
           K + +  A  L  ++   G +P    FN +++G     N   A E+L+   R    P +
Sbjct: 443 KKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDE 501



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 193/385 (50%), Gaps = 4/385 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  I++  +    +     V  M++  + P   T+  I   Y S+G+ + A  I  +M
Sbjct: 223 TFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTM 282

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
                     ++ +++  +CK+ ++E+A  +F+    K  +   + YN + +G+C     
Sbjct: 283 KRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNL 342

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A     EM+ +G++P ++TYN ++   F   + +EA     E++++    D +TY  +
Sbjct: 343 DMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNIL 402

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++G+      K+A  + D M+  G+ P+  TY +++ VL KK+ ++ A  +F+++  +G 
Sbjct: 403 INGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGV 462

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
           +P+   +N +I G C    ++ A E +  M   +  P+  T+N +++  C  G++E   E
Sbjct: 463 LPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARE 522

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           LF++M      P+  ++N LIS    R    D+  A ++  EM+D GF P   T+N ++ 
Sbjct: 523 LFDEMKRRGIKPDHISFNTLISGYSRR---GDIKDAFRVRNEMLDTGFNPTVLTYNALVQ 579

Query: 464 GLLLIGNQGLAKEILRLQSRCGRLP 488
           GL       LA+E+L+     G  P
Sbjct: 580 GLCKNQEGDLAEELLKEMVSKGMTP 604



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 138/255 (54%), Gaps = 4/255 (1%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           +S  HA+ +  R  +      ++  ++   + P   T+ I+   Y     A +A  +   
Sbjct: 365 NSLIHALFMEQRTDE---AECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDE 421

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKR 222
           M   G + +  ++ ++L +L K+ ++++A +LFK    +    DVI +N + +G C    
Sbjct: 422 MLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSN 481

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
              A E+LK+M    + P+  T+N +++G+ R G++EEA   F EMK+R  + D +++ T
Sbjct: 482 VKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNT 541

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++ G+   G+IK A  V + M++ G  P+V TYNA++Q LCK    + A  + +EMV KG
Sbjct: 542 LISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKG 601

Query: 343 YMPNSTTYNVVIRGL 357
             P+ TTY  +I G+
Sbjct: 602 MTPDDTTYFTLIEGI 616



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 149/328 (45%), Gaps = 3/328 (0%)

Query: 103 PSSFDHAIDLAARLRDYR--TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P SF +   ++   +  R      +   M    L P+   +  + + + + G  D A   
Sbjct: 289 PDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAY 348

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCL 219
              M + G   +++++N+++  L  E++ ++A  + K  + K    D I+YN++ NG+C 
Sbjct: 349 KDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCR 408

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
                KA  +  EM+  G+ P   TY  +L    +  +++EA   F ++       DV+ 
Sbjct: 409 CANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIM 468

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           +  ++ G      +K A  +   M    V P   T+N ++Q  C++  VE A  +F+EM 
Sbjct: 469 FNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMK 528

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            +G  P+  ++N +I G    G+++ A      M D    P V TYN L++  C   E +
Sbjct: 529 RRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGD 588

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSM 427
              EL ++M S    P+  TY  LI  +
Sbjct: 589 LAEELLKEMVSKGMTPDDTTYFTLIEGI 616



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 102/221 (46%), Gaps = 1/221 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  I+   R  + +  + L   M +  + PT+KT+  +        +   A  +F  +
Sbjct: 398 TYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKI 457

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRT 223
              G    +  FN ++D  C    V+ A+ L K + R K   D +++N I  G C   + 
Sbjct: 458 TSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKV 517

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A E+  EM  RG+ P+  ++N ++ GY R G I++A+R   EM        V+TY  +
Sbjct: 518 EEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNAL 577

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
           V G     E   A  +   MV+ G+ P   TY  +I+ + K
Sbjct: 578 VQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAK 618



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 4/188 (2%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           +S  H +    R+++      L  ++ S  + P    F  + + + S      A ++   
Sbjct: 435 TSLLHVLSKKNRMKE---ADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKD 491

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKR 222
           M          +FNTI+   C+E KVE+A  LF ++ R   K D IS+N + +G+     
Sbjct: 492 MDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGD 551

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
              A  V  EM+D G NP + TYN +++G  +  + + A     EM  +    D  TY T
Sbjct: 552 IKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFT 611

Query: 283 IVHGFGVV 290
           ++ G   V
Sbjct: 612 LIEGIAKV 619


>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 570

 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 172/333 (51%), Gaps = 6/333 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           PT  T+ I+ E  +  G  D A+K+   M E   +  + ++N+I+  +C+E  V++A+ +
Sbjct: 194 PTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQI 253

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
                 K +  DVI+YN++  G     +     E++ +MV RG   N+ TY++++    R
Sbjct: 254 ISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCR 313

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G++EE      +MKK+  + D   Y  ++      G +  A  V D M++ G +P +  
Sbjct: 314 DGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVN 373

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN ++  LCK+   + A+ +FE++   G  PN+++YN +   L  TG   RAL  +  M 
Sbjct: 374 YNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEML 433

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELF--EKMGSGVCLPNLDTYNILISSMFVRKK 432
           D   +P+  TYN LI   C  G ++  +EL    +M S  C P++ +YNI++  +    +
Sbjct: 434 DKGVDPDGITYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCKVSR 493

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
             D   A ++L  MVD+G  P + T+  ++ G+
Sbjct: 494 VSD---AIEVLAAMVDKGCRPNETTYTFLIEGI 523



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 156/301 (51%), Gaps = 6/301 (1%)

Query: 187 KKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
           K ++KA  +  +       D+I+YN I  G+C   R + A +VL  M ++G +P++ TYN
Sbjct: 106 KTIDKAIQVMHILENHGHPDLIAYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYN 165

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
           I++      G ++ A  F  ++ K  C+  VVTYT ++    + G I  A  + D M+  
Sbjct: 166 ILIGSLCSRGMLDSALEFKNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEI 225

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
            + P + TYN++I+ +C++  V+ A  +   +  KGY P+  TYN+++RGL + G+ E  
Sbjct: 226 NLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAG 285

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
            E +  M    CE NV TY++LI   C  G++E G+ L + M      P+   Y+ LI++
Sbjct: 286 YELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAA 345

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGR 486
           +    + D   +A ++L  M+  G +P    +N +L  L     Q  A E L +  + G 
Sbjct: 346 LCKEGRVD---LAIEVLDVMISDGCVPDIVNYNTILACLC---KQKRADEALSIFEKLGE 399

Query: 487 L 487
           +
Sbjct: 400 V 400



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 174/360 (48%), Gaps = 40/360 (11%)

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVI 213
           D+A+++   +  HG    L ++N I+   C+  +++ AY +    + K F  D+++YN++
Sbjct: 109 DKAIQVMHILENHG-HPDLIAYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNIL 167

Query: 214 ANGWC-----------------------------LVKRT------NKALEVLKEMVDRGL 238
               C                             L++ T      ++A+++L EM++  L
Sbjct: 168 IGSLCSRGMLDSALEFKNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINL 227

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
            P++ TYN +++G  R G ++ A++    +  +    DV+TY  ++ G    G+ +    
Sbjct: 228 QPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYE 287

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
           +   MV  G   +V TY+ +I  +C+   VE  + + ++M  KG  P+   Y+ +I  LC
Sbjct: 288 LMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALC 347

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLD 418
             G ++ A+E +  M  D C P++  YN ++   C     +  L +FEK+G   C PN  
Sbjct: 348 KEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNAS 407

Query: 419 TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           +YN + S+++    +   + A  +++EM+D+G  P   T+N +++ L   G    A E+L
Sbjct: 408 SYNSMFSALW---STGHKVRALGMILEMLDKGVDPDGITYNSLISCLCRDGMVDEAIELL 464



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 146/307 (47%), Gaps = 5/307 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M  ++L P   T+  I       G  DRA +I  S+   G    + ++N +L  L 
Sbjct: 218 LLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLL 277

Query: 185 KEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
            + K E  Y L    V RG  +A+V++Y+V+ +  C   +  + + +LK+M  +GL P+ 
Sbjct: 278 NQGKWEAGYELMSDMVARG-CEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDG 336

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
             Y+ ++    + G+++ A      M    C  D+V Y TI+           A ++F+ 
Sbjct: 337 YCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEK 396

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           +   G  P+ ++YN+M   L        A+ +  EM+ KG  P+  TYN +I  LC  G 
Sbjct: 397 LGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGITYNSLISCLCRDGM 456

Query: 363 MERALEFV--GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
           ++ A+E +    M+  EC+P+V +YNI++   C    +   +E+   M    C PN  TY
Sbjct: 457 VDEAIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLAAMVDKGCRPNETTY 516

Query: 421 NILISSM 427
             LI  +
Sbjct: 517 TFLIEGI 523



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 90/186 (48%), Gaps = 4/186 (2%)

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           +VN G  P V     +I  L    +++ AI V   +   G+ P+   YN +I G C    
Sbjct: 83  LVNKGHKPDVVLCTKLIHGLFTSKTIDKAIQVMHILENHGH-PDLIAYNAIITGFCRANR 141

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           ++ A + + RMK+    P++ TYNILI   C  G ++  LE   ++    C P + TY I
Sbjct: 142 IDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVVTYTI 201

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           LI +  ++   D+   A KLL EM++    P  FT+N ++ G+   G    A +I+   S
Sbjct: 202 LIEATLLQGGIDE---AMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSIS 258

Query: 483 RCGRLP 488
             G  P
Sbjct: 259 SKGYAP 264



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 102/240 (42%), Gaps = 39/240 (16%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  MK   L P    +  +       G+ D A+++   M   GC   + ++NTIL  LC
Sbjct: 323 LLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLC 382

Query: 185 KEKKVEKAYNLFK------------VFRGKFKA------------------------DVI 208
           K+K+ ++A ++F+             +   F A                        D I
Sbjct: 383 KQKRADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGI 442

Query: 209 SYNVIANGWCLVKRTNKALEVL--KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           +YN + +  C     ++A+E+L   EM      P++ +YNIVL G  +  ++ +A     
Sbjct: 443 TYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLA 502

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
            M  + C  +  TYT ++ G G  G +  AR++   +VN   + S  ++  + +  CK D
Sbjct: 503 AMVDKGCRPNETTYTFLIEGIGFGGCLNDARDLATTLVNMDAI-SEHSFERLYKTFCKLD 561



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 73/141 (51%), Gaps = 3/141 (2%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           ++  ++  +   P   ++  +     S G   RA+ + L M + G      ++N+++  L
Sbjct: 392 SIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGITYNSLISCL 451

Query: 184 CKEKKVEKAYNLF---KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
           C++  V++A  L    ++   + K  V+SYN++  G C V R + A+EVL  MVD+G  P
Sbjct: 452 CRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLAAMVDKGCRP 511

Query: 241 NLTTYNIVLKGYFRAGQIEEA 261
           N TTY  +++G    G + +A
Sbjct: 512 NETTYTFLIEGIGFGGCLNDA 532


>gi|413921612|gb|AFW61544.1| hypothetical protein ZEAMMB73_526638 [Zea mays]
          Length = 456

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 115/429 (26%), Positives = 184/429 (42%), Gaps = 40/429 (9%)

Query: 54  RTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLA 113
           RTL + L  PS   T   +  I        L A  F + L   P++A S   FD  +   
Sbjct: 61  RTLNR-LRLPSPFPTDLALRVIRAAAPAAPLHATRFLSWLRAKPSFAASAEHFDALLLPL 119

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
           AR R +  +W+L   M+ L L  +  TF+ +   Y  +   D+AV++F  +   GC Q+ 
Sbjct: 120 ARARLFPHLWSLASDMRGLGLPLSPTTFSAVISSYGHSRLPDQAVEVFNRLPRFGCPQTT 179

Query: 174 NSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
             +N +LD LC       AY L + + R     D  +++ + + WC   +  +A   L +
Sbjct: 180 EVYNALLDALCANGNFTGAYKLLRRMARKGVAPDRATFSTLVDSWCAAGKLQEAQAFLDD 239

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M  RGL P +   ++++ G  RAG +E+A  F L M K     DV T+ ++       G+
Sbjct: 240 MAGRGLRPPVRGRDLLVDGLVRAGHLEQAKAFALRMTKEGILPDVATFNSLAEALCNAGD 299

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           +  A ++     + G+ P ++TY  M+  + K   +E A  +F   V  G+ P  + Y  
Sbjct: 300 VDFAVSLLADASSRGLCPDISTYKVMLPAVAKVGKIEEAFRLFYAAVEDGHRPFPSLYAA 359

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           +I+ LC  G    A  F G MK     PN   Y +L++     G                
Sbjct: 360 IIKALCKAGRFADAFAFFGDMKTKGHPPNRPVYVMLVKMCVRGGR--------------- 404

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
                          FV         A   L+EM + GF PR  TF+ V++GL   G   
Sbjct: 405 ---------------FVE--------AANYLVEMSEAGFTPRAPTFSAVVDGLRHCGKHD 441

Query: 473 LAKEILRLQ 481
           LA+ + +L+
Sbjct: 442 LARRLEQLE 450



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 3/153 (1%)

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
            +M G G   + TT++ VI    H+   ++A+E   R+    C    + YN L+   C  
Sbjct: 133 SDMRGLGLPLSPTTFSAVISSYGHSRLPDQAVEVFNRLPRFGCPQTTEVYNALLDALCAN 192

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
           G      +L  +M      P+  T++ L+ S     K   L  A   L +M  RG  P  
Sbjct: 193 GNFTGAYKLLRRMARKGVAPDRATFSTLVDSWCAAGK---LQEAQAFLDDMAGRGLRPPV 249

Query: 456 FTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
              + +++GL+  G+   AK      ++ G LP
Sbjct: 250 RGRDLLVDGLVRAGHLEQAKAFALRMTKEGILP 282


>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
 gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 119/452 (26%), Positives = 205/452 (45%), Gaps = 40/452 (8%)

Query: 73  DQIIKRLWN--HALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMK 130
            +++ +L N  + L ALHFF  ++   ++ H+P ++   I      RD   +  L+  MK
Sbjct: 41  SEVLNKLKNEPNILLALHFFKSIANSNSFKHTPLTYTTMIKRLGYERDIDGIQYLLQLMK 100

Query: 131 SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK-- 188
              +   +  F I+   Y  AG A++A+K F  + E GC+ S+  +N +LD L  E K  
Sbjct: 101 LEGISCNEDLFVIVINAYRRAGLAEQALKTFYRIGEFGCKPSVKIYNHVLDALLSENKFQ 160

Query: 189 -VEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
            +   YN  K  R   + +V +YN++    C   R + A ++L EM  +G  P+  +Y  
Sbjct: 161 MINGIYNNMK--RDGIELNVYTYNMLLKALCKNDRVDAARKLLAEMSYKGCIPDAVSYTT 218

Query: 248 VLKGYFRAGQIEEA------------------------------WRFFLEMKKRKCEIDV 277
           V+    R G++EEA                              +  F EM     + DV
Sbjct: 219 VVSSMCRLGKVEEARELSMRIKSFVPVYNALINGFCREHKMEEVFELFNEMAVEGIDPDV 278

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           +TY+T+++    +G ++ A  V   M   G  P+V T+ ++++       +  A+ ++  
Sbjct: 279 ITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNR 338

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M+ +G  PN+  YN +I GLC  G+M  A+    +M+ +   PN  TY+ LI  F  AG+
Sbjct: 339 MIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGD 398

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           +    E++ KM +  CLPN+  Y  ++  +      +  L    L+  M +    P   T
Sbjct: 399 LVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHAL---HLIENMANGNCPPNTIT 455

Query: 458 FNRVLNGLLLIGNQGLAKEILRLQSRCGRLPR 489
           FN  + GL   G    A ++L    + G  P 
Sbjct: 456 FNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPN 487



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 104/422 (24%), Positives = 185/422 (43%), Gaps = 38/422 (9%)

Query: 79  LWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQ 138
           L   ALK  +        P    S   ++H +D       ++ +  + + MK   +    
Sbjct: 123 LAEQALKTFYRIGEFGCKP----SVKIYNHVLDALLSENKFQMINGIYNNMKRDGIELNV 178

Query: 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA------ 192
            T+ ++ +      + D A K+   M   GC     S+ T++  +C+  KVE+A      
Sbjct: 179 YTYNMLLKALCKNDRVDAARKLLAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEARELSMR 238

Query: 193 -------YN--------------LFKVFRG----KFKADVISYNVIANGWCLVKRTNKAL 227
                  YN              +F++F          DVI+Y+ + N    +     AL
Sbjct: 239 IKSFVPVYNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVEMAL 298

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
            VL +M  RG +PN+ T+  ++KGYF  G++ EA   +  M +   E + V Y T++HG 
Sbjct: 299 AVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGL 358

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
              G++  A +V   M   GV P+  TY+ +I    K   +  A  ++ +M+  G +PN 
Sbjct: 359 CSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKMITNGCLPNV 418

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
             Y  ++  LC       AL  +  M +  C PN  T+N  I+  C +G+ E  +++  +
Sbjct: 419 VVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCCSGKTEWAMKVLNQ 478

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467
           M    C PN+ TYN ++  +F  K++ + L   +++ E+ +        T+N +L+G   
Sbjct: 479 MRQYGCAPNVTTYNEVLDGLFNAKRTREAL---QIVGEIEEMEIKSNLVTYNTILSGFCH 535

Query: 468 IG 469
            G
Sbjct: 536 AG 537



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 178/398 (44%), Gaps = 40/398 (10%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           ++  I+   R      V+ L + M    + P   T++ +       G  + A+ +   M 
Sbjct: 246 YNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVEMALAVLAKMF 305

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTN 224
             GC  ++++F +++       ++ +A +L+ ++ +   + + ++YN + +G C   +  
Sbjct: 306 LRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMV 365

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           +A+ V ++M   G+ PN TTY+ ++ G+ +AG +  A   + +M    C  +VV YT +V
Sbjct: 366 EAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMV 425

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
                      A ++ + M NG   P+  T+N  I+ LC     E A+ V  +M   G  
Sbjct: 426 DVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCA 485

Query: 345 PNSTTYN-----------------------------------VVIRGLCHTGEMERALEF 369
           PN TTYN                                    ++ G CH G  + AL+ 
Sbjct: 486 PNVTTYNEVLDGLFNAKRTREALQIVGEIEEMEIKSNLVTYNTILSGFCHAGMFKGALQI 545

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG-SGVCLPNLDTYNILISSMF 428
            G++     +P+  TYN +I  +C  GE++  ++L +++   G   P++ TY  L+  + 
Sbjct: 546 AGKLLVGGTKPDSITYNTVIYAYCKQGEVKTAIQLVDRLTKKGEGYPDVFTYTSLLWGVC 605

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
                D+ +V    L +M++ G  P + T+N ++ GL 
Sbjct: 606 NWIGVDEAVVH---LDKMINEGICPNRATWNALVRGLF 640



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 100/412 (24%), Positives = 180/412 (43%), Gaps = 59/412 (14%)

Query: 41  AALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYA 100
           A LA + L    P   T T          +L + +   LWN  ++     N ++Y+ T  
Sbjct: 299 AVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEAL--DLWNRMIQEGSEPNTVAYN-TLI 355

Query: 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           H   S+   ++            ++  +M+   + P + T++ + + +  AG    A +I
Sbjct: 356 HGLCSYGKMVEAV----------SVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEI 405

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCL 219
           +  M  +GC  ++  +  ++D+LC+      A +L + +  G    + I++N    G C 
Sbjct: 406 WNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCC 465

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
             +T  A++VL +M   G  PN+TTYN VL G F A +  EA +                
Sbjct: 466 SGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQ---------------- 509

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
                    +VGEI+             +  ++ TYN ++   C     + A+ +  +++
Sbjct: 510 ---------IVGEIEEME----------IKSNLVTYNTILSGFCHAGMFKGALQIAGKLL 550

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM-KDDECEPNVQTYNILIRYFCDAGEI 398
             G  P+S TYN VI   C  GE++ A++ V R+ K  E  P+V TY  L+   C+   +
Sbjct: 551 VGGTKPDSITYNTVIYAYCKQGEVKTAIQLVDRLTKKGEGYPDVFTYTSLLWGVCNWIGV 610

Query: 399 ERGLELFEKM-GSGVCLPNLDTYNILISSMFVRKKS-------DDLLVAGKL 442
           +  +   +KM   G+C PN  T+N L+  +F +          D++L  GK+
Sbjct: 611 DEAVVHLDKMINEGIC-PNRATWNALVRGLFSKLGHLGPIHIVDNILANGKV 661


>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
          Length = 748

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 120/418 (28%), Positives = 195/418 (46%), Gaps = 45/418 (10%)

Query: 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ 171
           LA  L      W   H   + +  PT  T+ I+ + Y    + + A+ +F  +   G   
Sbjct: 99  LAVELFKRMDRWACPH---AAADAPTIYTYNILIDCYRRMHRPELALAVFGRLLRTGLGP 155

Query: 172 SLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVL 230
            + S+NT++D   KE +V+KAY LF K+       DV++YN + +G C  K   K+  VL
Sbjct: 156 DVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVL 215

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
           ++MVD G+ PN  TYN ++ GY  AG  +E+ R F EM        VV   + +H     
Sbjct: 216 EQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRH 275

Query: 291 GEIKRARNVFDGMVNGGVLPSVATY----------------NAMIQVLCKKDSVEN---- 330
             IK A+++FD MV  G  P++ +Y                N+++ ++  K  V N    
Sbjct: 276 NRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFF 335

Query: 331 ---------------AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
                          A+L+FE+M  KG +P++ T+  VI  LC  G ++ AL     M D
Sbjct: 336 NILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVD 395

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELF-EKMGSGVCLPNLDTYNILISSMFVRKKSD 434
               P+   Y  LI+  C+ GE+ +  EL  E M   +  P +  ++ +I+++F   +  
Sbjct: 396 IGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGR-- 453

Query: 435 DLLVAGKLLIE-MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
             +  GK +++ MV  G  P   TFN ++ G  L+GN   A  +L   +  G  P  +
Sbjct: 454 --VAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCY 509



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/457 (23%), Positives = 191/457 (41%), Gaps = 77/457 (16%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   + ++      ++ +M    + P  KT+  +   Y +AG    +V++F  M
Sbjct: 194 TYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEM 253

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKR 222
              G    + + N+ +  LC+  ++++A ++F   V +G  K ++ISY+ + +G+     
Sbjct: 254 SSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGP-KPNIISYSTLLHGYAAEGC 312

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
                 ++  MV +G+ PN   +NI++  Y R G +++A   F +M+ +    D VT+ T
Sbjct: 313 FANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFAT 372

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK- 341
           ++     +G +  A + F+ MV+ GV PS A Y  +IQ  C    +  A  +  EM+ K 
Sbjct: 373 VISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKD 432

Query: 342 -----------------------------------GYMPNSTTYNVVIRGLCHTGEMERA 366
                                              G  PN  T+N ++ G C  G ME A
Sbjct: 433 IPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEA 492

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
              +  M     EPN   Y  L+  +C  G I+  L +F  M      P    YNI++  
Sbjct: 493 FALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHG 552

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRG--------------------------------FMPR 454
           +F  +++     A K+  EM++ G                                 M  
Sbjct: 553 LFQARRTT---AAKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNV 609

Query: 455 KF---TFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           KF   TFN V++ +L +G +  AKE+    S  G +P
Sbjct: 610 KFDIITFNIVISAMLKVGRRQEAKELFAAISTYGLVP 646



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 165/386 (42%), Gaps = 42/386 (10%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           +  + +LV+ M S  + P  + F I+   Y   G  D+A+ IF  M   G      +F T
Sbjct: 313 FANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFAT 372

Query: 179 ILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
           ++  LC+  +++ A + F   V  G   ++ + Y  +  G C      KA E++ EM+++
Sbjct: 373 VISSLCRIGRLDDALHKFNHMVDIGVPPSEAV-YRCLIQGCCNHGELVKAKELISEMMNK 431

Query: 237 ------------------------------------GLNPNLTTYNIVLKGYFRAGQIEE 260
                                               G  PN+ T+N +++GY   G +EE
Sbjct: 432 DIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEE 491

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
           A+     M     E +   Y T+V G+   G I  A  VF  M++ GV P+   YN ++ 
Sbjct: 492 AFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILH 551

Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
            L +      A  +F EM+  G   +  TY VV+ GLC     + A   + ++     + 
Sbjct: 552 GLFQARRTTAAKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKF 611

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAG 440
           ++ T+NI+I      G  +   ELF  + +   +P + TYN++IS++   +  ++   A 
Sbjct: 612 DIITFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEE---AD 668

Query: 441 KLLIEMVDRGFMPRKFTFNRVLNGLL 466
            L I +   G  P     N ++  LL
Sbjct: 669 NLFISVEKSGRAPDSRLLNHIVRMLL 694



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 127/271 (46%), Gaps = 1/271 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   TF  + E Y   G  + A  +  +M   G   +   + T++D  CK  +++ A  +
Sbjct: 471 PNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTV 530

Query: 196 FK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F+ +     K   + YN+I +G    +RT  A ++  EM++ G   ++ TY +VL G  R
Sbjct: 531 FRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMFHEMIESGTTVSIQTYGVVLGGLCR 590

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
               +EA     ++     + D++T+  ++     VG  + A+ +F  +   G++P+V T
Sbjct: 591 NNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHT 650

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN MI  L K++S E A  +F  +   G  P+S   N ++R L    E+ +A  ++  + 
Sbjct: 651 YNLMISNLIKEESYEEADNLFISVEKSGRAPDSRLLNHIVRMLLKKAEVAKASNYLSIID 710

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           ++       T ++L   F   G+    ++L 
Sbjct: 711 ENNLTLEASTISLLASLFSREGKCREHIKLL 741


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 174/357 (48%), Gaps = 6/357 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++  M      P    + +I E    +G    +V++  +MH  GC     + N +L+ +C
Sbjct: 133 VLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAIC 192

Query: 185 KEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           ++  V++A  L +   F G  +AD++SYN +  G C+ KR     E++ EMV     PN+
Sbjct: 193 EQGCVDEAVGLLRKLAFFG-CEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNI 251

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            T+N ++    R G  E       +M +  C  D+  Y TI+ G    G ++ A  + + 
Sbjct: 252 VTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNR 311

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M + G+ P+V  YN +++ LC  +  + A  +  EM  K    +  T+N+++   C  G 
Sbjct: 312 MPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGL 371

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           ++R +E + +M    C P+V TY  +I  FC  G I+  + L + M S  C PN  +Y I
Sbjct: 372 VDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTI 431

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           ++  +    +  D   A +L+ +M+ +G  P   TFN ++N L   G    A E+L+
Sbjct: 432 VLKGLCSAGRWVD---AEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLK 485



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 108/386 (27%), Positives = 177/386 (45%), Gaps = 52/386 (13%)

Query: 84  LKALHFF----NILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQK 139
           L+ L FF    +I+SY+             + +A R  D   V  L+  M  +   P   
Sbjct: 204 LRKLAFFGCEADIVSYNAVL--------KGLCMAKRWGD---VEELMDEMVRVDCAPNIV 252

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           TF  +       G  +R  ++   M EHGC   +  + TI+D +CKE  +E         
Sbjct: 253 TFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLE--------- 303

Query: 200 RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
                        +AN            E+L  M   GL PN+  YN VLKG   A + +
Sbjct: 304 -------------VAN------------EILNRMPSYGLKPNVVCYNTVLKGLCSAERWK 338

Query: 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319
           EA     EM ++ C +D VT+  +V  F   G + R   + + M++ G +P V TY  +I
Sbjct: 339 EAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVI 398

Query: 320 QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
              CK+  ++ A+++ + M   G  PN+ +Y +V++GLC  G    A E + +M    C 
Sbjct: 399 NGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCP 458

Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA 439
           PN  T+N LI + C  G +E+ +EL ++M    C P+L +Y+ +I  +    K+++ L  
Sbjct: 459 PNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEAL-- 516

Query: 440 GKLLIEMVDRGFMPRKFTFNRVLNGL 465
            +LL  MV++G  P    ++ +   L
Sbjct: 517 -ELLNVMVNKGISPNTIIYSSIACAL 541



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 187/384 (48%), Gaps = 8/384 (2%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  I    R   +  V  ++ +M      P  + +A I +     G  + A +I   M
Sbjct: 253 TFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRM 312

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
             +G + ++  +NT+L  LC  ++ ++A  L  ++F+     D +++N++ + +C     
Sbjct: 313 PSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLV 372

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           ++ +E+L++M+  G  P++ TY  V+ G+ + G I+EA      M    C+ + V+YT +
Sbjct: 373 DRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIV 432

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G    G    A  +   M+  G  P+  T+N +I  LCKK  VE AI + ++M+  G 
Sbjct: 433 LKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGC 492

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+  +Y+ VI GL   G+ E ALE +  M +    PN   Y+ +       G + + ++
Sbjct: 493 SPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQ 552

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           +F+ +       +   YN +ISS+  R ++D    A      MV  G MP + T+  ++ 
Sbjct: 553 MFDNIKDTTIRSDAVLYNAVISSLCKRWETDR---AIDFFAYMVSNGCMPNESTYTMLIK 609

Query: 464 GLLLIGNQGLAKEILRLQSR-CGR 486
           GL    ++GLAKE   L S  C R
Sbjct: 610 GL---ASEGLAKEAQELLSELCSR 630



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 128/308 (41%), Gaps = 32/308 (10%)

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           +  G C   R   ALEVL EM  +G  P    Y+++L+   R+G    + R    M  + 
Sbjct: 117 VVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG 176

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
           C +D      +++     G +  A  +   +   G    + +YNA+++ LC      +  
Sbjct: 177 CTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVE 236

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
            + +EMV     PN  T+N +I  LC  G  ER  E + +M +  C P+++ Y  +I   
Sbjct: 237 ELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGI 296

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNI----------------LISSMFVRKKSDD- 435
           C  G +E   E+  +M S    PN+  YN                 L+S MF +    D 
Sbjct: 297 CKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDD 356

Query: 436 ----LLV-----------AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
               +LV             +LL +M+  G MP   T+  V+NG    G    A  +L+ 
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 416

Query: 481 QSRCGRLP 488
            S CG  P
Sbjct: 417 MSSCGCKP 424



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 111/221 (50%), Gaps = 1/221 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M S    P   ++ I+ +   SAG+   A ++   M + GC  +  +FNT+++ LC
Sbjct: 413 LLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLC 472

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K+  VE+A  L K +       D+ISY+ + +G     +T +ALE+L  MV++G++PN  
Sbjct: 473 KKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTI 532

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            Y+ +     R G++ +  + F  +K      D V Y  ++       E  RA + F  M
Sbjct: 533 IYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYM 592

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
           V+ G +P+ +TY  +I+ L  +   + A  +  E+  +G +
Sbjct: 593 VSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRGAL 633


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 134/481 (27%), Positives = 224/481 (46%), Gaps = 36/481 (7%)

Query: 25  LTTTSPAPLPPAAADPAALASLILT-----STDPRTLTQT-------LHCPSLHWTPQLV 72
           L   + AP   A     ALA  +       +  PR L+ T       + C +    P+L 
Sbjct: 73  LAALARAPSSAACGSGPALAVALFNRAASRAQGPRVLSPTSYTYAILMDCCTRAHRPELA 132

Query: 73  DQIIKRLWNHALKALHFFNILSYHPTYAHSPSS-FDHAIDLAARLRDYRTVWTLVHRMKS 131
                +L    L+      I++ H       +   D A+D+            L+HR   
Sbjct: 133 LAFFGQLLRTGLRV---DAIIASHLLKGFCEAKRTDEALDI------------LLHRTPE 177

Query: 132 LSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG--CRQSLNSFNTILDLLCKEKKV 189
           L   P   ++ I+ +   + GK+ +A  +   M E G  C   + ++NT++D   KE  V
Sbjct: 178 LGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDV 237

Query: 190 EKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
            KA +LFK  V RG    D+++Y+ + +  C  +  +KA   L++MV++G+ P+  TYN 
Sbjct: 238 NKACDLFKEMVQRG-IPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNN 296

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ GY   GQ +EA R F EM+++    DVV   T++      G+IK AR+VFD M   G
Sbjct: 297 LIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKG 356

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
             P V +Y  M+     K  + +   +F+ M+G G  P+  T+NV+I+   + G +++A+
Sbjct: 357 QNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAM 416

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
                M+D   +P+V TY  +I   C  G+++  +E F +M     +P+   Y+ LI   
Sbjct: 417 IIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQG- 475

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
           F    S  LL A +L+ E+++ G       F  ++N L  +G    A+ I  L    G  
Sbjct: 476 FCTHGS--LLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLH 533

Query: 488 P 488
           P
Sbjct: 534 P 534



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 181/400 (45%), Gaps = 44/400 (11%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           SS  HA+    + R        + +M +  + P   T+  +   Y S G+   AV++F  
Sbjct: 260 SSVVHAL---CKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKE 316

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFK-ADVISYNVIANGW----C 218
           M        + + NT++  LCK  K+++A ++F     K +  DV SY ++ NG+    C
Sbjct: 317 MRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGC 376

Query: 219 LVKRTN-------------------------------KALEVLKEMVDRGLNPNLTTYNI 247
           LV  T+                               KA+ +  EM D G+ P++ TY  
Sbjct: 377 LVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMT 436

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           V+    R G++++A   F +M  +    D   Y  ++ GF   G + +A+ +   ++N G
Sbjct: 437 VIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNG 496

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           +   +  + ++I  LCK   V +A  +F+  V  G  P++  YN+++ G C  G+ME+AL
Sbjct: 497 MRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKAL 556

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
                M     EPNV  Y  L+  +C  G I+ GL LF +M      P+   YNI+I  +
Sbjct: 557 RVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 616

Query: 428 FVRKKSDDLLVAGKLLI-EMVDRGFMPRKFTFNRVLNGLL 466
           F   ++    V  K+   EM + G    K T++ VL GL 
Sbjct: 617 FEAGRT----VPAKVKFHEMTESGIAMNKCTYSIVLRGLF 652



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 94/397 (23%), Positives = 179/397 (45%), Gaps = 8/397 (2%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII 144
           KA+  FN +  H    H   ++   I    R+          ++M    + P +  +  +
Sbjct: 414 KAMIIFNEMRDHGVKPHV-VTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCL 472

Query: 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV-FRGKF 203
            + + + G   +A ++   +  +G R  +  F +I++ LCK  +V  A N+F +      
Sbjct: 473 IQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGL 532

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
             D + YN++ +G+CLV +  KAL V   MV  G+ PN+  Y  ++ GY + G+I+E   
Sbjct: 533 HPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLS 592

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
            F EM ++  +   + Y  I+ G    G    A+  F  M   G+  +  TY+ +++ L 
Sbjct: 593 LFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLF 652

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
           K    + AI +F+E+       +  T N +I G+  T  +E A +    +      P   
Sbjct: 653 KNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAV 712

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
           TY+I+I      G +E   ++F  M +  C P+    N ++  +    K ++++ AG  L
Sbjct: 713 TYSIMITNLLKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELL---KKNEIVRAGAYL 769

Query: 444 IEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
            ++ +R F     T   +++   L  ++G  +E +R 
Sbjct: 770 SKIDERNFSLEHLTAMLLVD---LFSSKGTCREQIRF 803



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 160/355 (45%), Gaps = 6/355 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   ++ I+   Y + G       +F  M   G    + +FN ++        ++KA  +
Sbjct: 359 PDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMII 418

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F   R    K  V++Y  +    C + + + A+E   +M+D+G+ P+   Y+ +++G+  
Sbjct: 419 FNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCT 478

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G + +A     E+      +D+V + +I++    +G +  A+N+FD  VN G+ P    
Sbjct: 479 HGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVV 538

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN ++   C    +E A+ VF+ MV  G  PN   Y  ++ G C  G ++  L     M 
Sbjct: 539 YNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREML 598

Query: 375 DDECEPNVQTYNILIRYFCDAGE-IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
               +P+   YNI+I    +AG  +   ++  E   SG+ + N  TY+I++  +F  +  
Sbjct: 599 QKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAM-NKCTYSIVLRGLFKNRCF 657

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           D+ +    L  E+          T N ++ G+        AK++    SR G +P
Sbjct: 658 DEAIF---LFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVP 709


>gi|357148528|ref|XP_003574800.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
           mitochondrial-like [Brachypodium distachyon]
          Length = 464

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 114/430 (26%), Positives = 186/430 (43%), Gaps = 42/430 (9%)

Query: 54  RTLTQTLHCPSLHWTPQLVDQIIKRLW-NHALKALHFFNILSYHPTYAHSPSSFDHAIDL 112
           RTL + L  PS  + P L  ++IK       L A  F   L   P ++ S   FD  +  
Sbjct: 69  RTLNR-LRLPS-PFPPDLALRVIKAAAPAEPLHAARFLAWLRAKPNFSPSAEHFDALLLP 126

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
            AR R +  +WT    M++L L  +  TF+ +   Y  +   ++AV++F  +   GC Q+
Sbjct: 127 LARARLFTHLWTQASDMRALGLPLSPATFSAVISSYGHSRLPEQAVEVFNRLPHFGCPQT 186

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLK 231
              +N +LD LC       AY L + + R     D  +++ + + WC   +  +A   L 
Sbjct: 187 TEVYNALLDALCSNGNFAGAYKLLRRMARKGVAPDRATFSTLVDAWCASGKLREAQAFLD 246

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
           +M  RG  P +   ++++ G  RAG++EEA  F +   K     DV T+ ++       G
Sbjct: 247 DMASRGFRPPVRGRDLLVDGLVRAGRLEEAKAFAVRFTKEGVLPDVATFNSLAQALCDAG 306

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
           ++K A  +     + G+ P ++TY  M+  + K   +E A  +F   V  G+ P  + Y 
Sbjct: 307 DVKFAVGLLADASSRGLCPDISTYKVMLPAVAKAGQIEEAFRLFYAAVEDGHRPFPSLYA 366

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
            +++ LC  G    A  F G MK     PN   Y +L++     G               
Sbjct: 367 AIVKALCKAGRFGDAFAFFGDMKSKGHPPNRPVYVMLVKMCVRGGRF------------- 413

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
                LD  N                     L+EM + GF PR  TFN V++GL  +G  
Sbjct: 414 -----LDAANY--------------------LVEMSEAGFAPRVPTFNAVVDGLRHLGKH 448

Query: 472 GLAKEILRLQ 481
            LA+ + +L+
Sbjct: 449 DLAQRMEQLE 458



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 63/153 (41%), Gaps = 3/153 (1%)

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
            +M   G   +  T++ VI    H+   E+A+E   R+    C    + YN L+   C  
Sbjct: 141 SDMRALGLPLSPATFSAVISSYGHSRLPEQAVEVFNRLPHFGCPQTTEVYNALLDALCSN 200

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
           G      +L  +M      P+  T++ L+ +     K   L  A   L +M  RGF P  
Sbjct: 201 GNFAGAYKLLRRMARKGVAPDRATFSTLVDAWCASGK---LREAQAFLDDMASRGFRPPV 257

Query: 456 FTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
              + +++GL+  G    AK      ++ G LP
Sbjct: 258 RGRDLLVDGLVRAGRLEEAKAFAVRFTKEGVLP 290


>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
 gi|194700420|gb|ACF84294.1| unknown [Zea mays]
 gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
          Length = 598

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/396 (27%), Positives = 189/396 (47%), Gaps = 14/396 (3%)

Query: 98  TYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRA 157
            YAH+P    HA+    R+ D      ++  M      P   T+ I+ +         +A
Sbjct: 163 AYAHNP--LIHALCERGRVAD---ALVVLDGMLCRGCAPDVVTYNILLQAACKGRGYRQA 217

Query: 158 VKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANG 216
           +++   M   GC  +  ++N I+D +C+E  V++A  L      +  K + ++YN +  G
Sbjct: 218 LELIDFMRAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKG 277

Query: 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID 276
           +C ++R   A E+L EMV     PN  T N+++    R G +++   +  +M K  C  +
Sbjct: 278 FCSIERWVDADEILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTAN 337

Query: 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE 336
           VVTY  ++ G    G +  A  +   M + G  P + TYN +++ LC  D  E+A  +  
Sbjct: 338 VVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMI 397

Query: 337 EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
           +M     +P+++T+N +I   C  G + +A E   +M +  C PN  TY+ +I     AG
Sbjct: 398 KMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAG 457

Query: 397 EIERGLELFEKMGS-GVCLPNLDT-YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
           ++E+ LEL  +M + G    N D  Y +L  S+    K D +    +++ ++ D G  P+
Sbjct: 458 KMEQALELLNEMANKGF---NTDKMYRVLTESL---NKEDKIEEVVQVVHKLQDSGISPQ 511

Query: 455 KFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
              +N VL GL   G    A ++L     CG +P +
Sbjct: 512 TVLYNTVLLGLCRNGKTDYAIDVLADMVSCGCMPDE 547



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 103/350 (29%), Positives = 171/350 (48%), Gaps = 8/350 (2%)

Query: 133 SLGP--TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190
           + GP  T  T+  + + Y  AG  + A ++   M  H    S  + N ++  LC+  +V 
Sbjct: 121 ACGPEATAATYGALVDGYCRAGLLEDARRVVGGMPAHVQASSAYAHNPLIHALCERGRVA 180

Query: 191 KAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
            A  +    + RG    DV++YN++    C  +   +ALE++  M   G  PN  TYN++
Sbjct: 181 DALVVLDGMLCRG-CAPDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVTYNVI 239

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           +    R G +++A      +  R C+ + V Y T++ GF  +     A  + D MV    
Sbjct: 240 IDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVRENC 299

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
            P+ AT N +I  LC+K  ++   L  E+M   G   N  TYN VI G+C  G ++ ALE
Sbjct: 300 PPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALE 359

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
            +  M+   C+P++ TYN +++  C A   E   EL  KM     LP+  T+N +I S +
Sbjct: 360 LLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTII-SFW 418

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
            +K    +L A ++  +M ++G  P   T++ ++ GL   G    A E+L
Sbjct: 419 CQKGL--ILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQALELL 466



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 107/381 (28%), Positives = 179/381 (46%), Gaps = 6/381 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  +  A + R YR    L+  M++    P   T+ +I +     G  D+A ++  S+
Sbjct: 200 TYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSL 259

Query: 165 HEHGCRQSLNSFNTILDLLCK-EKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRT 223
              GC+ +  ++NT+L   C  E+ V+    L ++ R     +  + NVI N  C     
Sbjct: 260 PSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVRENCPPNEATLNVIINTLCRKGLL 319

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            K    L++M   G   N+ TYN V+ G    G ++ A      M+   C+ D+VTY T+
Sbjct: 320 QKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTV 379

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G       + A  +   M     LP  +T+N +I   C+K  +  A  VF++M  KG 
Sbjct: 380 LKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGC 439

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PNSTTY+ +I GL   G+ME+ALE +  M +     + + Y +L        +IE  ++
Sbjct: 440 NPNSTTYSTIIGGLTKAGKMEQALELLNEMANKGFNTD-KMYRVLTESLNKEDKIEEVVQ 498

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           +  K+      P    YN ++  +    K+D    A  +L +MV  G MP + T+  ++ 
Sbjct: 499 VVHKLQDSGISPQTVLYNTVLLGLCRNGKTD---YAIDVLADMVSCGCMPDESTYIILIE 555

Query: 464 GLLLIGNQGLAKEIL-RLQSR 483
           GL   G    A+E+L RL SR
Sbjct: 556 GLFYEGYSKEARELLSRLCSR 576



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 172/386 (44%), Gaps = 9/386 (2%)

Query: 78  RLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPT 137
           R +  AL+ + F       P       +++  ID   R  D      L++ + S    P 
Sbjct: 212 RGYRQALELIDFMRAEGCEPNNV----TYNVIIDAMCREGDVDQARELLNSLPSRGCKPN 267

Query: 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEK-AYNLF 196
              +  + + + S  +   A +I   M    C  +  + N I++ LC++  ++K    L 
Sbjct: 268 TVNYNTVLKGFCSIERWVDADEILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLYLE 327

Query: 197 KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256
           K+ +    A+V++YN + +G C     + ALE+L  M   G  P++ TYN VLKG   A 
Sbjct: 328 KMSKHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSAD 387

Query: 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
           + E+A    ++M +     D  T+ TI+  +   G I +A  VF  M   G  P+  TY+
Sbjct: 388 RWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYS 447

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
            +I  L K   +E A+ +  EM  KG+  +   Y V+   L    ++E  ++ V +++D 
Sbjct: 448 TIIGGLTKAGKMEQALELLNEMANKGFNTDK-MYRVLTESLNKEDKIEEVVQVVHKLQDS 506

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
              P    YN ++   C  G+ +  +++   M S  C+P+  TY ILI  +F    S + 
Sbjct: 507 GISPQTVLYNTVLLGLCRNGKTDYAIDVLADMVSCGCMPDESTYIILIEGLFYEGYSKE- 565

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVL 462
             A +LL  +  R  +      N  L
Sbjct: 566 --ARELLSRLCSRDVLSNSLIKNEAL 589



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 133/318 (41%), Gaps = 41/318 (12%)

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           DV   N +    C   R   A  V++     G      TY  ++ GY RAG +E+A R  
Sbjct: 95  DVPLANRLVRDLCRRGRPADAARVVEAC---GPEATAATYGALVDGYCRAGLLEDARRVV 151

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
             M           +  ++H     G +  A  V DGM+  G  P V TYN ++Q  CK 
Sbjct: 152 GGMPAHVQASSAYAHNPLIHALCERGRVADALVVLDGMLCRGCAPDVVTYNILLQAACKG 211

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
                A+ + + M  +G  PN+ TYNV+I  +C  G++++A E +  +    C+PN   Y
Sbjct: 212 RGYRQALELIDFMRAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNY 271

Query: 386 NILIRYFC------DAGEI------------------------ERGL-----ELFEKMGS 410
           N +++ FC      DA EI                         +GL        EKM  
Sbjct: 272 NTVLKGFCSIERWVDADEILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSK 331

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
             C  N+ TYN +IS M  +   D  L   +LL  M   G  P   T+N VL GL     
Sbjct: 332 HGCTANVVTYNAVISGMCEQGNVDSAL---ELLSNMQSFGCKPDIVTYNTVLKGLCSADR 388

Query: 471 QGLAKEILRLQSRCGRLP 488
              A+E++   S+  RLP
Sbjct: 389 WEDAEELMIKMSQNDRLP 406


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 135/485 (27%), Positives = 227/485 (46%), Gaps = 43/485 (8%)

Query: 16  FCIYRGLSPLTTTSPAPLPPAAADPAALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQI 75
           FC    +SPL       LP   +DP ++         P  L   L  P+ H  P L   +
Sbjct: 42  FC---SVSPLIRN----LPEDESDPTSV---------PHRLFSILSKPNWHKCPSLKSMV 85

Query: 76  -------IKRLWNHALK---ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTL 125
                  +  L++  L    AL+F + +S +P Y HS  S+   + L         V+ +
Sbjct: 86  PAISPSHVSSLFSLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFKI 145

Query: 126 VHRMKSLSLGPTQKTFAIIAERYVSAGKA-DRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
              M           F +   R ++  ++ +   K+ +     GC      +NT+L+ L 
Sbjct: 146 RLLMIKSCDSVADTLFVLDLCRKMNKDESFELKYKLII-----GC------YNTLLNSLA 194

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           +   V++   ++ ++   K   ++ +YN + NG+C V    +A + +  +V+ GL+P+  
Sbjct: 195 RFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFF 254

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY  ++ GY +   ++ A++ F EM  + C  + V YT ++HG  V   I  A ++F  M
Sbjct: 255 TYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKM 314

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            +    P+V TY  +I+ LC  +    A+ + +EM  KG  PN  TY V+I  LC   ++
Sbjct: 315 KDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKL 374

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           E+A E +G+M +    PNV TYN LI  +C  G IE  L++ E M S    PN  TYN L
Sbjct: 375 EKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNEL 434

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I     R    ++  A  +L +M++R  +P   T+N +++G    GN   A  +L L + 
Sbjct: 435 IKGYCKR----NVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMND 490

Query: 484 CGRLP 488
            G +P
Sbjct: 491 RGLVP 495



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 109/421 (25%), Positives = 186/421 (44%), Gaps = 38/421 (9%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++ H I      R       L  +MK     PT +T+ ++ +    + +   A+ +   M
Sbjct: 290 AYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEM 349

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
            E G + +++++  ++D LC + K+EKA  L  ++       +VI+YN + NG+C     
Sbjct: 350 EEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMI 409

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGY------------------------------- 252
             AL+V++ M  R L PN  TYN ++KGY                               
Sbjct: 410 EDALDVVELMESRNLRPNTRTYNELIKGYCKRNVHKAMGVLNKMLERKVLPDVVTYNSLI 469

Query: 253 ---FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
               R+G  + A+R    M  R    D  TYT+++        ++ A ++FD +    V+
Sbjct: 470 DGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVI 529

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           P+V  Y A+I   CK   V  A L+ E+M+ K  +PNS T+N +I GLC  G+++ A   
Sbjct: 530 PNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLL 589

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
             +M   + +P V T  ILI      G+ +     F++M S    P+  TY   I +   
Sbjct: 590 EEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCR 649

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPR 489
             +  D   A  ++ +M + G  P  FT++ ++ G   +G    A  +L+     G  P 
Sbjct: 650 EGRLQD---AEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPS 706

Query: 490 Q 490
           Q
Sbjct: 707 Q 707



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 173/337 (51%), Gaps = 5/337 (1%)

Query: 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
           L P   T+  +   Y      D A K+F  M   GCR++  ++  ++  LC E+++++A 
Sbjct: 249 LDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAM 308

Query: 194 NLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
           +LF K+        V +Y V+    C  +R ++AL ++KEM ++G+ PN+ TY +++   
Sbjct: 309 DLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSL 368

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
               ++E+A     +M ++    +V+TY  +++G+   G I+ A +V + M +  + P+ 
Sbjct: 369 CSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNT 428

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            TYN +I+  CK++ V  A+ V  +M+ +  +P+  TYN +I G C +G  + A   +  
Sbjct: 429 RTYNELIKGYCKRN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSL 487

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           M D    P+  TY  +I   C +  +E   +LF+ +     +PN+  Y  LI       K
Sbjct: 488 MNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGK 547

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
            ++   A  +L +M+ +  +P   TFN +++GL   G
Sbjct: 548 VNE---AHLMLEKMLSKNCLPNSLTFNALIHGLCTDG 581



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/384 (23%), Positives = 182/384 (47%), Gaps = 18/384 (4%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           +V  M+S +L P  +T+  + + Y       +A+ +   M E      + ++N+++D  C
Sbjct: 415 VVELMESRNLRPNTRTYNELIKGYCKRN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQC 473

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           +    + AY L  +   +    D  +Y  + +  C  KR  +A ++   +  + + PN+ 
Sbjct: 474 RSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVV 533

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            Y  ++ GY +AG++ EA     +M  + C  + +T+  ++HG    G++K A  + + M
Sbjct: 534 MYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKM 593

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           V   + P+V+T   +I  L K    ++A   F++M+  G  P++ TY   I+  C  G +
Sbjct: 594 VKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRL 653

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A + V +MK++   P++ TY+ LI+ + D G       + ++M    C P+  T+  L
Sbjct: 654 QDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSL 713

Query: 424 ISSMFVRKKSD---------------DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
           I  +   K                  +  +  +LL +MV+ G  P   ++ +++ G+  I
Sbjct: 714 IKHLLEMKYGKVKGGEPGVCVMSNMMEFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEI 773

Query: 469 GNQGLAKEIL-RLQSRCGRLPRQF 491
           GN  +A+++   +Q + G  P + 
Sbjct: 774 GNLRVAEKVFDHMQQKEGISPSEL 797



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 143/325 (44%), Gaps = 30/325 (9%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L  +M  + L PT  T  I+  R +  G  D A + F  M   G +   +++ T +   C
Sbjct: 589 LEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYC 648

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           +E +++ A ++  K+       D+ +Y+ +  G+  + RTN A  VLK M D G  P+  
Sbjct: 649 REGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQH 708

Query: 244 TYNIVLK-------GYFRAGQ-----IEEAWRF--FLEMKKRKCEIDVV----TYTTIVH 285
           T+  ++K       G  + G+     +     F   +E+ ++  E  V     +Y  ++ 
Sbjct: 709 TFLSLIKHLLEMKYGKVKGGEPGVCVMSNMMEFDIVVELLEKMVEHGVTPNAKSYEKLML 768

Query: 286 GFGVVGEIKRARNVFDGMVNG-GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
           G   +G ++ A  VFD M    G+ PS   +NA++   CK +    A  V ++M+  G++
Sbjct: 769 GICEIGNLRVAEKVFDHMQQKEGISPSELVFNALLSCCCKLEKHNEAAKVVDDMICVGHL 828

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRM-----KDDECEPNVQTYNILIRYFCDAGEIE 399
           P   +  ++I  L   GE ER       +      DDE       + I+I      G +E
Sbjct: 829 PQLESCKILICRLYKKGEKERGTSVFQNLLQCGYYDDEL-----AWKIIIDGVGKQGLVE 883

Query: 400 RGLELFEKMGSGVCLPNLDTYNILI 424
              ELF  M    C  +  TY++LI
Sbjct: 884 AFYELFNVMEKNGCTFSSQTYSLLI 908



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 82/399 (20%), Positives = 171/399 (42%), Gaps = 26/399 (6%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
            P ++   ID   + +       L   ++   + P    +  + + Y  AGK + A  + 
Sbjct: 496 DPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLML 555

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL-FKVFRGKFKADVISYNVIANGWCLV 220
             M    C  +  +FN ++  LC + K+++A  L  K+ +   +  V +  ++ +     
Sbjct: 556 EKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKD 615

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
              + A    ++M+  G  P+  TY   ++ Y R G++++A     +MK+     D+ TY
Sbjct: 616 GDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTY 675

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ----------------VLCK 324
           ++++ G+G +G    A  V   M + G  PS  T+ ++I+                V   
Sbjct: 676 SSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVM 735

Query: 325 KDSVENAILV--FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE-CEPN 381
            + +E  I+V   E+MV  G  PN+ +Y  ++ G+C  G +  A +    M+  E   P+
Sbjct: 736 SNMMEFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPS 795

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
              +N L+   C   +     ++ + M     LP L++  ILI  ++ + + +       
Sbjct: 796 ELVFNALLSCCCKLEKHNEAAKVVDDMICVGHLPQLESCKILICRLYKKGEKER---GTS 852

Query: 442 LLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           +   ++  G+   +  +  +++G   +G QGL +    L
Sbjct: 853 VFQNLLQCGYYDDELAWKIIIDG---VGKQGLVEAFYEL 888



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/220 (20%), Positives = 95/220 (43%), Gaps = 20/220 (9%)

Query: 121 TVWTLVHRMKSLSLGPTQKTFA-----IIAERY--VSAGKA-----------DRAVKIFL 162
           + + ++ RM      P+Q TF      ++  +Y  V  G+            D  V++  
Sbjct: 690 SAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMMEFDIVVELLE 749

Query: 163 SMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK--FKADVISYNVIANGWCLV 220
            M EHG   +  S+  ++  +C+   +  A  +F   + K       + +N + +  C +
Sbjct: 750 KMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELVFNALLSCCCKL 809

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
           ++ N+A +V+ +M+  G  P L +  I++   ++ G+ E     F  + +     D + +
Sbjct: 810 EKHNEAAKVVDDMICVGHLPQLESCKILICRLYKKGEKERGTSVFQNLLQCGYYDDELAW 869

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
             I+ G G  G ++    +F+ M   G   S  TY+ +I+
Sbjct: 870 KIIIDGVGKQGLVEAFYELFNVMEKNGCTFSSQTYSLLIE 909


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/434 (25%), Positives = 200/434 (46%), Gaps = 22/434 (5%)

Query: 74  QIIKRLWNHALKALHFFNILSYH-PTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSL 132
           Q++ R        L F  ++SYH P + HS  S    +    R R        + RM   
Sbjct: 105 QVLFRCRGDLHLGLKFIGLVSYHFPNFKHSSXSLSAMVHFLVRGRRLSEAQACILRMVRK 164

Query: 133 S-----------------LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS 175
           S                  G     + ++   YV A K     + F  +   G   S+N+
Sbjct: 165 SGVSRVKVVESLISTCFYFGSVGLIYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINA 224

Query: 176 FNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
            N +L  L +   V+ A+ ++ +V RG  + +V + N++ N  C  ++    +  L +M 
Sbjct: 225 CNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDME 284

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
            +G+  ++ TYN ++  Y R G +EEA++       R  E  ++TY  I++G   +G+  
Sbjct: 285 GKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYD 344

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
           RA++V   M+  G+ P+ ATYN ++  +C++D++  A  +F+EM  +G +P+  +++ +I
Sbjct: 345 RAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLI 404

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
             L   G + +AL     M+     P+   Y ILI  FC  G +   L++ ++M +  C 
Sbjct: 405 GVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCF 464

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
            ++ TYN  ++ +  +K   D   A  L  EMV+RG +P  +TF  ++ G    GN   A
Sbjct: 465 MDVVTYNTFLNGLCKKKMFAD---ADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKA 521

Query: 475 KEILRLQSRCGRLP 488
             +     R    P
Sbjct: 522 LNLFEAMVRTNLKP 535



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 175/375 (46%), Gaps = 4/375 (1%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           ++  Y     ++  M  L L P   T+  +            A +IF  M   G    L 
Sbjct: 339 KIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLV 398

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           SF++++ +L +   + +A   F+   R     D + Y ++ +G+C     + AL++  EM
Sbjct: 399 SFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEM 458

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           + RG   ++ TYN  L G  +     +A   F EM +R    D  T+TT++ G+   G +
Sbjct: 459 LARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNM 518

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
            +A N+F+ MV   + P   TYN +I   CK   +  A  ++++M+ K  +P+  +Y  V
Sbjct: 519 DKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTV 578

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           + G C +G +  AL    +M +    PN+ T N LI+ +C +G++ +  E   KM S   
Sbjct: 579 LNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGI 638

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGL 473
           +P+  +YN LI       K  +L  A  L+ EM  RG      T+N +LNG    G    
Sbjct: 639 IPDSFSYNTLIDGYL---KEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQE 695

Query: 474 AKEILRLQSRCGRLP 488
           A+++LR     G  P
Sbjct: 696 AEQVLRKMIEIGINP 710



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 170/371 (45%), Gaps = 40/371 (10%)

Query: 158 VKIFLS-MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIAN 215
           V  FLS M   G    + ++NT+++  C+E  VE+A+ L   F  +  +  +++YN I  
Sbjct: 276 VMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILY 335

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
           G C + + ++A +VL EM+  GL PN  TYN +L    R   I EA   F EM +R    
Sbjct: 336 GLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLP 395

Query: 276 DVVT-----------------------------------YTTIVHGFGVVGEIKRARNVF 300
           D+V+                                   YT ++ GF   G +  A  + 
Sbjct: 396 DLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMR 455

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           D M+  G    V TYN  +  LCKK    +A ++F EMV +G +P+  T+  +IRG C  
Sbjct: 456 DEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKD 515

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
           G M++AL     M     +P+  TYN LI  FC AGE+ R  EL++ M     +P+  +Y
Sbjct: 516 GNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISY 575

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
             +++       S  L  A  L  +M+++G  P   T N ++ G    G+   A E L  
Sbjct: 576 GTVLNGFC---SSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSK 632

Query: 481 QSRCGRLPRQF 491
               G +P  F
Sbjct: 633 MISNGIIPDSF 643



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 164/331 (49%), Gaps = 6/331 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   +F+ +       G   +A+  F  M   G       +  ++D  C+   +  A  +
Sbjct: 395 PDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKM 454

Query: 196 FK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
               + RG F  DV++YN   NG C  K    A  +  EMV+RG+ P+  T+  +++GY 
Sbjct: 455 RDEMLARGCF-MDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYC 513

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
           + G +++A   F  M +   + D VTY T++ GF   GE+ RA+ ++D M+   ++P   
Sbjct: 514 KDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHI 573

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           +Y  ++   C    +  A+ + ++M+ KG  PN  T N +I+G C +G+M +A E++ +M
Sbjct: 574 SYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKM 633

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
             +   P+  +YN LI  +     +E+   L  +M       N+ TYN++++      K 
Sbjct: 634 ISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKM 693

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
            +   A ++L +M++ G  P   T++ ++NG
Sbjct: 694 QE---AEQVLRKMIEIGINPDGATYSSLING 721



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 129/253 (50%), Gaps = 1/253 (0%)

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIAN 215
           A  +F  M E G      +F T++   CK+  ++KA NLF+   R   K D ++YN + +
Sbjct: 486 ADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLID 545

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
           G+C      +A E+  +M+ + + P+  +Y  VL G+  +G + EA     +M ++    
Sbjct: 546 GFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRP 605

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
           ++VT  T++ G+   G++ +A      M++ G++P   +YN +I    K+ ++E A ++ 
Sbjct: 606 NLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILI 665

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
            EM  +G   N  TYN+++ G C  G+M+ A + + +M +    P+  TY+ LI      
Sbjct: 666 NEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQ 725

Query: 396 GEIERGLELFEKM 408
             ++      ++M
Sbjct: 726 DNMKEAFRFHDEM 738



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 123/259 (47%), Gaps = 36/259 (13%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L + M    + P   TF  +   Y   G  D+A+ +F +M     +    ++NT++D  C
Sbjct: 489 LFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFC 548

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  ++ +A  L+  + R     D ISY  + NG+C      +AL +  +M+++G+ PNL 
Sbjct: 549 KAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLV 608

Query: 244 TYNIVLKGYFRAGQIEEAWRFFL-----------------------------------EM 268
           T N ++KGY R+G + +A+ +                                     EM
Sbjct: 609 TCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEM 668

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
           +KR  + +++TY  I++GF   G+++ A  V   M+  G+ P  ATY+++I     +D++
Sbjct: 669 EKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNM 728

Query: 329 ENAILVFEEMVGKGYMPNS 347
           + A    +EM+ +G +P+ 
Sbjct: 729 KEAFRFHDEMLQRGLVPDD 747


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 172/332 (51%), Gaps = 5/332 (1%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA-YNLFKV 198
           T+ I       AG+   AV++   M  +     + ++NT++  LCK+   ++A + L ++
Sbjct: 223 TYNIWIRGLCEAGRLPEAVRLVDGMRAYAVPDVV-TYNTLIRGLCKKSMPQEAMHYLRRM 281

Query: 199 FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
                  D  +YN I +G+C +    +A E+LK+ V +G  P+  TY  ++ G    G +
Sbjct: 282 MNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDV 341

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           E A   F E + +  + D+V Y ++V G  + G I  A  V + M   G  P + TYN +
Sbjct: 342 ERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIV 401

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           I  LCK  ++ +A +V  + + KGY+P+  T+N +I G C   +++ AL+ V RM +   
Sbjct: 402 INGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGI 461

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
            P+  TYN ++   C AG++    E F++M    C PN  TYNILI + F R  S+ +  
Sbjct: 462 APDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIEN-FCR--SNKMEE 518

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
           A K++++M   G  P   +FN ++ G    G+
Sbjct: 519 ASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGD 550



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 108/395 (27%), Positives = 178/395 (45%), Gaps = 33/395 (8%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           RM +    P   T+  I + Y        A ++       G      ++ ++++ LC E 
Sbjct: 280 RMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEG 339

Query: 188 KVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
            VE+A  LF   + K  K D++ YN +  G CL      AL+V+ EM + G +P++ TYN
Sbjct: 340 DVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYN 399

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
           IV+ G  + G I +A     +   +    DV T+ T++ G+    ++  A  + + M   
Sbjct: 400 IVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEY 459

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G+ P   TYN+++  LCK   V      F+EM+ KG  PN  TYN++I   C + +ME A
Sbjct: 460 GIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEA 519

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
            + + +M  +   P+  ++N LI  FC  G++E    LF+K+         DT+N LI +
Sbjct: 520 SKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGA 579

Query: 427 M-------FVRKKSDDLLVAGKL-------------------------LIEMVDRGFMPR 454
                      K  D++L  G                           L+EM+ +GF+P 
Sbjct: 580 FSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPS 639

Query: 455 KFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPR 489
             TF RV+N L +      A  I+ +  + G +P 
Sbjct: 640 MSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPE 674



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/398 (27%), Positives = 177/398 (44%), Gaps = 18/398 (4%)

Query: 96  HPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKAD 155
           HP Y  S  ++  A     RLRD    +    RM   +  P    +  I +  V A   D
Sbjct: 50  HPLYVASIRAYARA----GRLRDAVDAF---ERMDLFACPPAAPAYNAIMDALVDAAYHD 102

Query: 156 RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVI 213
           +A K+++ M   G    L++    L   C   +   A  L +    RG      ++Y  +
Sbjct: 103 QAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRG-----AVAYCTV 157

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
             G      T+ A ++  +M+   + PNL  +N VL    + G + EA     ++ +R  
Sbjct: 158 VCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGM 217

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
            I++ TY   + G    G +  A  + DGM     +P V TYN +I+ LCKK   + A+ 
Sbjct: 218 SINLFTYNIWIRGLCEAGRLPEAVRLVDGM-RAYAVPDVVTYNTLIRGLCKKSMPQEAMH 276

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
               M+ +G +P+  TYN +I G C    ++ A E +         P+  TY  LI   C
Sbjct: 277 YLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLC 336

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
             G++ER LELF +  +    P++  YN L+  + ++     +L A +++ EM + G  P
Sbjct: 337 AEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGL---ILHALQVMNEMAEEGCHP 393

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
              T+N V+NGL  +GN   A  ++      G LP  F
Sbjct: 394 DIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVF 431



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 135/266 (50%), Gaps = 1/266 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           +++ M      P  +T+ I+       G    A  +       G    + +FNT++D  C
Sbjct: 382 VMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYC 441

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  K++ A  L  +++      D I+YN + NG C   + N+  E  +EM+ +G +PN  
Sbjct: 442 KRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPI 501

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYNI+++ + R+ ++EEA +  ++M +     D V++ T+++GF   G+++ A  +F  +
Sbjct: 502 TYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKL 561

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G   +  T+N +I     K ++  A  +F+EM+ KG+  +S TY V+I G C T  +
Sbjct: 562 EEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANV 621

Query: 364 ERALEFVGRMKDDECEPNVQTYNILI 389
           +RA   +  M      P++ T+  +I
Sbjct: 622 DRAYMHLVEMIKKGFIPSMSTFGRVI 647



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 105/242 (43%), Gaps = 1/242 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  ID   +     +   LV RM    + P   T+  +      AGK +   + F  M
Sbjct: 432 TFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEM 491

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRT 223
              GC  +  ++N +++  C+  K+E+A   + K+ +     D +S+N +  G+C     
Sbjct: 492 ILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDL 551

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
             A  + +++ ++G +    T+N ++  +     +  A + F EM  +    D  TY  +
Sbjct: 552 EGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVL 611

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G      + RA      M+  G +PS++T+  +I  L     V  A+ +   MV  G 
Sbjct: 612 IDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGV 671

Query: 344 MP 345
           +P
Sbjct: 672 VP 673



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 107/226 (47%), Gaps = 6/226 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+ I+ E +  + K + A K+ + M + G      SFNT++   C+   +E AY L
Sbjct: 498 PNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLL 557

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F+    K + A   ++N +   +      + A ++  EM+ +G   +  TY +++ G  +
Sbjct: 558 FQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCK 617

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
              ++ A+   +EM K+     + T+  +++   V   + +A  +   MV  GV+P V  
Sbjct: 618 TANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEVVD 677

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
               I    KK+     ILV E+++ KG++ +  TY V+  G+  T
Sbjct: 678 ---TILNADKKEIAAPKILV-EDLMKKGHI-SYPTYEVLHEGVQST 718


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 172/332 (51%), Gaps = 5/332 (1%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA-YNLFKV 198
           T+ I       AG+   AV++   M  +     + ++NT++  LCK+   ++A + L ++
Sbjct: 224 TYNIWIRGLCEAGRLPEAVRLVDGMRAYAVPDVV-TYNTLIRGLCKKSMPQEAMHYLRRM 282

Query: 199 FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
                  D  +YN I +G+C +    +A E+LK+ V +G  P+  TY  ++ G    G +
Sbjct: 283 MNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDV 342

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           E A   F E + +  + D+V Y ++V G  + G I  A  V + M   G  P + TYN +
Sbjct: 343 ERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIV 402

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           I  LCK  ++ +A +V  + + KGY+P+  T+N +I G C   +++ AL+ V RM +   
Sbjct: 403 INGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGI 462

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
            P+  TYN ++   C AG++    E F++M    C PN  TYNILI + F R  S+ +  
Sbjct: 463 APDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIEN-FCR--SNKMEE 519

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
           A K++++M   G  P   +FN ++ G    G+
Sbjct: 520 ASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGD 551



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/395 (27%), Positives = 178/395 (45%), Gaps = 33/395 (8%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           RM +    P   T+  I + Y        A ++       G      ++ ++++ LC E 
Sbjct: 281 RMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEG 340

Query: 188 KVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
            VE+A  LF   + K  K D++ YN +  G CL      AL+V+ EM + G +P++ TYN
Sbjct: 341 DVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYN 400

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
           IV+ G  + G I +A     +   +    DV T+ T++ G+    ++  A  + + M   
Sbjct: 401 IVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEY 460

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G+ P   TYN+++  LCK   V      F+EM+ KG  PN  TYN++I   C + +ME A
Sbjct: 461 GIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEA 520

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
            + + +M  +   P+  ++N LI  FC  G++E    LF+K+         DT+N LI +
Sbjct: 521 SKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGA 580

Query: 427 M-------FVRKKSDDLLVAGKL-------------------------LIEMVDRGFMPR 454
                      K  D++L  G                           L+EM+ +GF+P 
Sbjct: 581 FSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPS 640

Query: 455 KFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPR 489
             TF RV+N L +      A  I+ +  + G +P 
Sbjct: 641 MSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPE 675



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/398 (27%), Positives = 177/398 (44%), Gaps = 18/398 (4%)

Query: 96  HPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKAD 155
           HP Y  S  ++  A     RLRD    +    RM   +  P    +  I +  V A   D
Sbjct: 51  HPLYVASIRAYARA----GRLRDAVDAF---ERMDLFACPPAAPAYNAIMDALVDAAYHD 103

Query: 156 RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVI 213
           +A K+++ M   G    L++    L   C   +   A  L +    RG      ++Y  +
Sbjct: 104 QAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRG-----AVAYCTV 158

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
             G      T+ A ++  +M+   + PNL  +N VL    + G + EA     ++ +R  
Sbjct: 159 VCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGM 218

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
            I++ TY   + G    G +  A  + DGM     +P V TYN +I+ LCKK   + A+ 
Sbjct: 219 SINLFTYNIWIRGLCEAGRLPEAVRLVDGM-RAYAVPDVVTYNTLIRGLCKKSMPQEAMH 277

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
               M+ +G +P+  TYN +I G C    ++ A E +         P+  TY  LI   C
Sbjct: 278 YLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLC 337

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
             G++ER LELF +  +    P++  YN L+  + ++     +L A +++ EM + G  P
Sbjct: 338 AEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGL---ILHALQVMNEMAEEGCHP 394

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
              T+N V+NGL  +GN   A  ++      G LP  F
Sbjct: 395 DIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVF 432



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 135/266 (50%), Gaps = 1/266 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           +++ M      P  +T+ I+       G    A  +       G    + +FNT++D  C
Sbjct: 383 VMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYC 442

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  K++ A  L  +++      D I+YN + NG C   + N+  E  +EM+ +G +PN  
Sbjct: 443 KRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPI 502

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYNI+++ + R+ ++EEA +  ++M +     D V++ T+++GF   G+++ A  +F  +
Sbjct: 503 TYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKL 562

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G   +  T+N +I     K ++  A  +F+EM+ KG+  +S TY V+I G C T  +
Sbjct: 563 EEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANV 622

Query: 364 ERALEFVGRMKDDECEPNVQTYNILI 389
           +RA   +  M      P++ T+  +I
Sbjct: 623 DRAYMHLVEMIKKGFIPSMSTFGRVI 648



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 105/242 (43%), Gaps = 1/242 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  ID   +     +   LV RM    + P   T+  +      AGK +   + F  M
Sbjct: 433 TFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEM 492

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRT 223
              GC  +  ++N +++  C+  K+E+A   + K+ +     D +S+N +  G+C     
Sbjct: 493 ILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDL 552

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
             A  + +++ ++G +    T+N ++  +     +  A + F EM  +    D  TY  +
Sbjct: 553 EGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVL 612

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G      + RA      M+  G +PS++T+  +I  L     V  A+ +   MV  G 
Sbjct: 613 IDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGV 672

Query: 344 MP 345
           +P
Sbjct: 673 VP 674



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 107/226 (47%), Gaps = 6/226 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+ I+ E +  + K + A K+ + M + G      SFNT++   C+   +E AY L
Sbjct: 499 PNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLL 558

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F+    K + A   ++N +   +      + A ++  EM+ +G   +  TY +++ G  +
Sbjct: 559 FQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCK 618

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
              ++ A+   +EM K+     + T+  +++   V   + +A  +   MV  GV+P V  
Sbjct: 619 TANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEVVD 678

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
               I    KK+     ILV E+++ KG++ +  TY V+  G+  T
Sbjct: 679 ---TILNADKKEIAAPKILV-EDLMKKGHI-SYPTYEVLHEGVQST 719


>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 894

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 138/501 (27%), Positives = 221/501 (44%), Gaps = 35/501 (6%)

Query: 1   MFALLRKPPKNHLHFFCIYRGLSPLTTTSPAPLPPAAADPAALASLILTSTDPRTLTQTL 60
           +F LL      + + F +   L P ++ SP  L      P+ + +++L     +  +   
Sbjct: 7   LFTLLHHNQNQNQNLFHLL--LKPFSSLSPNSLQQDL--PSQIFTILLQPQWRKNPSFNT 62

Query: 61  HCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAAR---LR 117
             PSL  TP  +  +      H L AL+FF  + Y   + H+  S+   + +  R   LR
Sbjct: 63  LIPSL--TPTHLSSLFNNPNLHPLTALNFFKWIHYQHGFIHTVHSYQPLLFILVRNGFLR 120

Query: 118 DYRTVWT------------------LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
               V                    L H   SLS+    + F +++ R+   G  D    
Sbjct: 121 AAENVRNSMIKSCVSSHEARFVLNLLTHHEFSLSVTSYNRLFMVLS-RF---GLIDELNC 176

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWC 218
           +F  M   G   +L SFNT+++  CK   V  A   F  + +  F  D  +Y  +  G+C
Sbjct: 177 LFKDMLNDGVEPNLISFNTMVNAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYC 236

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
            +     A +V + M   G   N  +Y  ++ G+   G+I+EA   F +MK+  C  DV 
Sbjct: 237 KIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVP 296

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TYT +V  F  VG+   A   F+ MV  G+ P+V TY  +I   CK   ++  + +   M
Sbjct: 297 TYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTM 356

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
           + KG + +   +N +I G C  G ME A+  +  MK ++  PN +TYN LI  FC    +
Sbjct: 357 LEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSM 416

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           +R + L  KM      PNL TYN LI  +   +  D    A +L   M+  GF+P + TF
Sbjct: 417 DRAMALLNKMYENKLSPNLVTYNTLIHGLCKARVVDS---AWRLHHLMIKDGFVPDQRTF 473

Query: 459 NRVLNGLLLIGNQGLAKEILR 479
              ++ L  +G    A ++  
Sbjct: 474 CAFIDCLCKMGKVEQAHQVFE 494



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 176/357 (49%), Gaps = 13/357 (3%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+ ++ + +   GK D  +++  +M E G   S+  FN ++D  CK   +E A  +
Sbjct: 328 PNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICV 387

Query: 196 FKVFR-GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
               +  K   +  +YN +  G+C  K  ++A+ +L +M +  L+PNL TYN ++ G  +
Sbjct: 388 LDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCK 447

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
           A  ++ AWR    M K     D  T+   +     +G++++A  VF+ +       +   
Sbjct: 448 ARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFL 507

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y A+I   CK +   +A L+F+ M+ +G  PNS T+NV++ GL   G++E A+  V  M 
Sbjct: 508 YTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMG 567

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
             + +P V TY ILI       + +R     ++M S  C PN+ TY   I + + R+   
Sbjct: 568 KFDAKPTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPNVVTYTAFIKA-YCRQGR- 625

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
            LL A ++++++ + G +   F ++ ++N    IG         +L S  G L R F
Sbjct: 626 -LLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIG---------QLDSAFGVLIRMF 672



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 156/328 (47%), Gaps = 6/328 (1%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           T+  +   Y    +   A K+F  M + GC ++  S+  ++   C+  K+++A  LF   
Sbjct: 227 TYTSLILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQM 286

Query: 200 R--GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
           +  G F  DV +Y V+   +C V +  +AL+  +EMV+ G+ PN+ TY +++  + + G+
Sbjct: 287 KEDGCF-PDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGK 345

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           ++E       M ++     VV +  ++ G+   G ++ A  V D M    V P+  TYN 
Sbjct: 346 MDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNE 405

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           +I   C+K S++ A+ +  +M      PN  TYN +I GLC    ++ A      M  D 
Sbjct: 406 LICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDG 465

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
             P+ +T+   I   C  G++E+  ++FE +       N   Y  LI      +K  D  
Sbjct: 466 FVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSD-- 523

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            A  L   M+  G  P   TFN +L+GL
Sbjct: 524 -AHLLFKRMLFEGCFPNSITFNVLLDGL 550



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 183/382 (47%), Gaps = 21/382 (5%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            R +       L+++M    L P   T+  +      A   D A ++   M + G     
Sbjct: 411 CRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQ 470

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKF-KADVISYNVIANGWCLVKRTNKALEVLKE 232
            +F   +D LCK  KVE+A+ +F+  + K  +A+   Y  + +G+C  ++ + A  + K 
Sbjct: 471 RTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKR 530

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M+  G  PN  T+N++L G  + G++E+A      M K   +  V TYT ++       +
Sbjct: 531 MLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESD 590

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK----GYMPNST 348
             RA    D M++ G  P+V TY A I+  C++  +  A    EEMV K    G + +S 
Sbjct: 591 FDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEA----EEMVVKIKEEGILLDSF 646

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            Y+V++      G+++ A   + RM D  CEP+ QTY+IL+++           E + K 
Sbjct: 647 IYDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYSILLKHLI--------FEKYNKE 698

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
           G G+   +L++ NI + +  + K +D  ++   L  +MV++G +P   T+++++ GL  +
Sbjct: 699 GMGL---DLNSTNISVDNANIWKIADFEIIT-MLFEKMVEQGCVPNVNTYSKLIKGLCKV 754

Query: 469 GNQGLAKEILRLQSRCGRLPRQ 490
            +  LA  +       G  P +
Sbjct: 755 EHLSLAFRLFNHMKESGISPSE 776



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 107/419 (25%), Positives = 181/419 (43%), Gaps = 69/419 (16%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE------- 166
           AR+ D  + W L H M      P Q+TF    +     GK ++A ++F S+ E       
Sbjct: 448 ARVVD--SAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANE 505

Query: 167 ----------------------------HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV 198
                                        GC  +  +FN +LD L KE KVE A +L  V
Sbjct: 506 FLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDV 565

Query: 199 FRGKFKAD--VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256
             GKF A   V +Y ++          ++A   L +M+  G  PN+ TY   +K Y R G
Sbjct: 566 M-GKFDAKPTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQG 624

Query: 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
           ++ EA    +++K+    +D   Y  +V+ +G +G++  A  V   M + G  PS  TY+
Sbjct: 625 RLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYS 684

Query: 317 AMIQVLCKKD---------------SVENA-----------ILVFEEMVGKGYMPNSTTY 350
            +++ L  +                SV+NA            ++FE+MV +G +PN  TY
Sbjct: 685 ILLKHLIFEKYNKEGMGLDLNSTNISVDNANIWKIADFEIITMLFEKMVEQGCVPNVNTY 744

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           + +I+GLC    +  A      MK+    P+   +N L+   C  G  E  L L + M  
Sbjct: 745 SKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCCKLGMHEEALRLLDSMME 804

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
              L +L++Y +L+  +F +   +    A ++   ++  G+   +  +  +L+GL+  G
Sbjct: 805 YNHLAHLESYKLLVCGLFEQGNQEK---AEEIFRSLLSCGYNYDEVVWKVLLDGLVRKG 860



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 1/170 (0%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           ++ D+  +  L  +M      P   T++ + +          A ++F  M E G   S N
Sbjct: 718 KIADFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSEN 777

Query: 175 SFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
             N++L   CK    E+A  L   +      A + SY ++  G        KA E+ + +
Sbjct: 778 IHNSLLSSCCKLGMHEEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSL 837

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           +  G N +   + ++L G  R G ++E  +    M+K  C +   T+T +
Sbjct: 838 LSCGYNYDEVVWKVLLDGLVRKGYVDECSQLRDIMEKTGCRLHSDTHTML 887


>gi|357465315|ref|XP_003602939.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491987|gb|AES73190.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 121/448 (27%), Positives = 220/448 (49%), Gaps = 27/448 (6%)

Query: 22  LSPLTTTSPAPLPPAAADPAALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWN 81
           +SPL  T P  L P    P            P  +       S + T  +   +IKR  +
Sbjct: 100 ISPLNFTKP--LEPKLDPP------------PEIVVAETRKKSKYITHDVAINLIKREKD 145

Query: 82  --HALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQK 139
             HALK    FN++S    + H+ +++   +   A+ + ++ V  ++H+M   +    + 
Sbjct: 146 PQHALK---IFNMVSEQKGFNHNNATYATILQKLAQFKKFQAVDRVLHQMTYEACKFHEG 202

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHE-HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV 198
            F  + + Y   G  ++    FLS+      + S  + ++ L+LL    +V+    L   
Sbjct: 203 VFINLMKHYSKCGFHEKVFDAFLSIQTIVREKPSPKAISSCLNLLVDSNQVDLVRKLLLY 262

Query: 199 FRGK--FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN-PNLTTYNIVLKGYFRA 255
            +    +K +V  +N++    C     + A EV+KEM +   + PN+ TY+ ++ G  R 
Sbjct: 263 AKRSLVYKPNVCIFNILVKYHCRRGDIDSAFEVVKEMRNSKYSYPNVITYSTLMDGLCRN 322

Query: 256 GQIEEAWRFFLEM-KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
           G+++EA+  F EM  K +   D +TY  +++GF   G+  RARNV + M N G  P+V  
Sbjct: 323 GRLKEAFELFEEMVSKDQIVPDPLTYNVLINGFCREGKADRARNVIEFMKNNGCCPNVFN 382

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y+A++  LCK   +++A  V  EM   G  P++ TY  +I      G+++ A+E +  MK
Sbjct: 383 YSALVDGLCKAGKLQDAKGVLAEMKSSGLKPDAITYTSLINFFSRNGQIDEAIELLTEMK 442

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
           +++C+ +  T+N+++   C  G  +  L++ EK+       N  +Y I+++S+    ++ 
Sbjct: 443 ENDCQADTVTFNVILGGLCREGRFDEALDMIEKLPQQGVYLNKGSYRIVLNSL---TQNC 499

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           +L  A KLL  M+ RGF+P   T N +L
Sbjct: 500 ELRKANKLLGLMLSRGFVPHYATSNELL 527



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 164/327 (50%), Gaps = 8/327 (2%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG-CRQSLNSFNTILDLL 183
           L++  +SL   P    F I+ + +   G  D A ++   M        ++ +++T++D L
Sbjct: 260 LLYAKRSLVYKPNVCIFNILVKYHCRRGDIDSAFEVVKEMRNSKYSYPNVITYSTLMDGL 319

Query: 184 CKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           C+  ++++A+ LF+  V + +   D ++YNV+ NG+C   + ++A  V++ M + G  PN
Sbjct: 320 CRNGRLKEAFELFEEMVSKDQIVPDPLTYNVLINGFCREGKADRARNVIEFMKNNGCCPN 379

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           +  Y+ ++ G  +AG++++A     EMK    + D +TYT++++ F   G+I  A  +  
Sbjct: 380 VFNYSALVDGLCKAGKLQDAKGVLAEMKSSGLKPDAITYTSLINFFSRNGQIDEAIELLT 439

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M          T+N ++  LC++   + A+ + E++  +G   N  +Y +V+  L    
Sbjct: 440 EMKENDCQADTVTFNVILGGLCREGRFDEALDMIEKLPQQGVYLNKGSYRIVLNSLTQNC 499

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI-ERGLELFEKMGSGVCLPNLDTY 420
           E+ +A + +G M      P+  T N L+   C  G   +    LF+ +  G   P  D++
Sbjct: 500 ELRKANKLLGLMLSRGFVPHYATSNELLVRLCKEGMANDAATALFDLVDMGF-QPQHDSW 558

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMV 447
            +LI  +   +K   LL   +LL E+V
Sbjct: 559 ELLIDLICRDRK---LLYVFELLDELV 582



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 125/294 (42%), Gaps = 45/294 (15%)

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLK--EMV--DRGLNPNLTTYNIVLKGYFRAGQIE 259
           K+  I+++V  N   L+KR       LK   MV   +G N N  TY  +L+   +  + +
Sbjct: 127 KSKYITHDVAIN---LIKREKDPQHALKIFNMVSEQKGFNHNNATYATILQKLAQFKKFQ 183

Query: 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319
              R   +M    C+     +  ++  +   G  ++   VFD  ++             I
Sbjct: 184 AVDRVLHQMTYEACKFHEGVFINLMKHYSKCGFHEK---VFDAFLS-------------I 227

Query: 320 QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
           Q + ++     AI     +     + +S   ++V + L +    +R+L +         +
Sbjct: 228 QTIVREKPSPKAISSCLNL-----LVDSNQVDLVRKLLLYA---KRSLVY---------K 270

Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
           PNV  +NIL++Y C  G+I+   E+ ++M  S    PN+ TY+ L+  +    ++  L  
Sbjct: 271 PNVCIFNILVKYHCRRGDIDSAFEVVKEMRNSKYSYPNVITYSTLMDGLC---RNGRLKE 327

Query: 439 AGKLLIEMVDRG-FMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           A +L  EMV +   +P   T+N ++NG    G    A+ ++      G  P  F
Sbjct: 328 AFELFEEMVSKDQIVPDPLTYNVLINGFCREGKADRARNVIEFMKNNGCCPNVF 381


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 113/408 (27%), Positives = 197/408 (48%), Gaps = 21/408 (5%)

Query: 91  NILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRM------------KSLSL---- 134
           +I S  P + HS  SF   I +  R R       ++ RM            +SL L    
Sbjct: 224 SITSNCPNFKHSLQSFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTYGN 283

Query: 135 -GPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
            G     F ++   YV A K     + F  +   G   S+N+ N++L  L K   V+ A+
Sbjct: 284 CGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAW 343

Query: 194 NLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
            +++ V R   + +V + N++ N  C  ++       L +M ++G+ P++ TYN ++  Y
Sbjct: 344 EIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAY 403

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
            R G +EEA+     M  +  +  V TY  I++G    G+  RA+ V D M+  G+ P  
Sbjct: 404 CRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDT 463

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
           ATYN ++   C+ D++ +A  +F+EM  +G +P+  +++ +I  L   G +++AL++   
Sbjct: 464 ATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRD 523

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           MK+    P+   Y ILI  FC  G +   L++ ++M    C  ++ TYN +++ +   K 
Sbjct: 524 MKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKM 583

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
              L  A +L  EM +RG  P  +TF  ++NG    GN   A  +  +
Sbjct: 584 ---LSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEM 628



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 169/341 (49%), Gaps = 4/341 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           +   M S  + P   +F+ +       G  D+A+K F  M   G       +  ++   C
Sbjct: 485 IFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFC 544

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           +   + +A  +  ++       DV++YN I NG C  K  ++A E+  EM +RG+ P+  
Sbjct: 545 RNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFY 604

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           T+  ++ GY + G + +A   F  M +R  + DVVTY T++ GF    E+++   +++ M
Sbjct: 605 TFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDM 664

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           ++  + P+  +Y  +I   C    V  A  +++EMV KG+     T N +++G C  G  
Sbjct: 665 ISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNA 724

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
            +A EF+  M      P+  TYN LI  F     ++R   L  KM +   LP++ TYN++
Sbjct: 725 VKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVI 784

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           ++    + +  +   A  ++++M++RG  P + T+  ++NG
Sbjct: 785 LNGFSRQGRMQE---AELIMLKMIERGVNPDRSTYTSLING 822



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 180/375 (48%), Gaps = 4/375 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  I+   +   Y     ++  M  + + P   T+ I+            A +IF  M
Sbjct: 430 TYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEM 489

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRT 223
              G    L SF+ ++ LL K   +++A   F+  +    A D + Y ++  G+C     
Sbjct: 490 PSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVM 549

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           ++AL+V  EM+++G   ++ TYN +L G  +   + EA   F EM +R    D  T+TT+
Sbjct: 550 SEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTL 609

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++G+   G + +A  +F+ M+   + P V TYN +I   CK   +E    ++ +M+ +  
Sbjct: 610 INGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRI 669

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN  +Y ++I G C+ G +  A      M +   E  + T N +++ +C AG   +  E
Sbjct: 670 YPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADE 729

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
               M     +P+  TYN LI+  F+++++ D   A  L+ +M + G +P   T+N +LN
Sbjct: 730 FLSNMLLKGIVPDGITYNTLING-FIKEENMDRAFA--LVNKMENSGLLPDVITYNVILN 786

Query: 464 GLLLIGNQGLAKEIL 478
           G    G    A+ I+
Sbjct: 787 GFSRQGRMQEAELIM 801



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 109/357 (30%), Positives = 164/357 (45%), Gaps = 40/357 (11%)

Query: 159 KIFLS-MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANG 216
           K FLS M E G    + ++NT+++  C++  +E+A+ L     GK  K  V +YN I NG
Sbjct: 378 KSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIING 437

Query: 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL---------------------KGYF-- 253
            C   +  +A  VL EM+  G++P+  TYNI+L                     +G    
Sbjct: 438 LCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPD 497

Query: 254 ------------RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
                       + G +++A ++F +MK      D V YT ++ GF   G +  A  V D
Sbjct: 498 LVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRD 557

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M+  G    V TYN ++  LCK+  +  A  +F EM  +G  P+  T+  +I G    G
Sbjct: 558 EMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDG 617

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
            M +A+     M     +P+V TYN LI  FC   E+E+  EL+  M S    PN  +Y 
Sbjct: 618 NMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYG 677

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           ILI+         +   A +L  EMV++GF     T N ++ G    GN   A E L
Sbjct: 678 ILINGYCNMGCVSE---AFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFL 731



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 175/389 (44%), Gaps = 12/389 (3%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  I+   R       + L+  M    L P   T+  I       GK  RA  +   M
Sbjct: 395 TYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEM 454

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYN----VIANGWCL 219
            + G      ++N +L   C+   +  A  +F     +    D++S++    +++   CL
Sbjct: 455 LKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCL 514

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
               ++AL+  ++M + GL P+   Y I++ G+ R G + EA +   EM ++ C +DVVT
Sbjct: 515 ----DQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVT 570

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y TI++G      +  A  +F  M   GV P   T+  +I    K  ++  A+ +FE M+
Sbjct: 571 YNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMI 630

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            +   P+  TYN +I G C   EME+  E    M      PN  +Y ILI  +C+ G + 
Sbjct: 631 QRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVS 690

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
               L+++M        + T N ++       ++ + + A + L  M+ +G +P   T+N
Sbjct: 691 EAFRLWDEMVEKGFEATIITCNTIVKGYC---RAGNAVKADEFLSNMLLKGIVPDGITYN 747

Query: 460 RVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            ++NG +   N   A  ++      G LP
Sbjct: 748 TLINGFIKEENMDRAFALVNKMENSGLLP 776



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 143/316 (45%), Gaps = 36/316 (11%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           MK+  L P    + I+   +   G    A+K+   M E GC   + ++NTIL+ LCKEK 
Sbjct: 524 MKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKM 583

Query: 189 VEKAYNLFKVF--RGKF----------------------------------KADVISYNV 212
           + +A  LF     RG F                                  K DV++YN 
Sbjct: 584 LSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNT 643

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           + +G+C      K  E+  +M+ R + PN  +Y I++ GY   G + EA+R + EM ++ 
Sbjct: 644 LIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKG 703

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
            E  ++T  TIV G+   G   +A      M+  G++P   TYN +I    K+++++ A 
Sbjct: 704 FEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAF 763

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
            +  +M   G +P+  TYNV++ G    G M+ A   + +M +    P+  TY  LI   
Sbjct: 764 ALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGH 823

Query: 393 CDAGEIERGLELFEKM 408
                ++    + ++M
Sbjct: 824 VTQNNLKEAFRVHDEM 839



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 117/258 (45%), Gaps = 36/258 (13%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L   M    + P   TF  +   Y   G  ++AV +F  M +   +  + ++NT++D  C
Sbjct: 590 LFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFC 649

Query: 185 KEKKVEKAYNLF-----------------------------KVFR-------GKFKADVI 208
           K  ++EK   L+                             + FR         F+A +I
Sbjct: 650 KGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATII 709

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           + N I  G+C      KA E L  M+ +G+ P+  TYN ++ G+ +   ++ A+    +M
Sbjct: 710 TCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKM 769

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
           +      DV+TY  I++GF   G ++ A  +   M+  GV P  +TY ++I     ++++
Sbjct: 770 ENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNL 829

Query: 329 ENAILVFEEMVGKGYMPN 346
           + A  V +EM+ +G++P+
Sbjct: 830 KEAFRVHDEMLQRGFVPD 847



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 88/216 (40%), Gaps = 38/216 (17%)

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
           C  + + +  +V  +    +++     F  + + G+  S+   N+++  L K   V+ A 
Sbjct: 284 CGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAW 343

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
            +++E+V  G   N  T N++I  LC   ++E    F+  M++    P+V TYN LI  +
Sbjct: 344 EIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAY 403

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
           C  G +E   E FE M S                                   M  +G  
Sbjct: 404 CRQGLLE---EAFELMDS-----------------------------------MSGKGLK 425

Query: 453 PRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           P  FT+N ++NGL   G    AK +L    + G  P
Sbjct: 426 PCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSP 461


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 176/348 (50%), Gaps = 5/348 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS-MHEHGCRQSLNSFNTILDLL 183
           L+  M    + P   T+ I+     + G+ + A+ +    M   GC  ++ ++NT++   
Sbjct: 141 LLASMLRDGVAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAF 200

Query: 184 CKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           C+  +V+ A  L  V R G  +  ++++N + NG C   R   A ++  EM   GL P+ 
Sbjct: 201 CRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDG 260

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            +YN ++ GY +AG + EA   F EM ++    DVVT+T+++H     G ++RA  +   
Sbjct: 261 VSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQ 320

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M   G+  +  T+ A+I   C+   +++A+L  +EM      P+   YNV+I G C  G 
Sbjct: 321 MRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGR 380

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           M+ A E +  M+    +P+V TY+ ++  +C  G+ +   EL  KM     +P+  TY+ 
Sbjct: 381 MDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSS 440

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
           LI  +   ++  D   A +L  +M+  G  P +FT+  +++G    GN
Sbjct: 441 LIRGLCEERRLGD---ACELFEKMLQLGLQPDEFTYTTLIDGHCKEGN 485



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 104/355 (29%), Positives = 173/355 (48%), Gaps = 4/355 (1%)

Query: 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ 171
           L AR +    +  +   M+     P   T+  +   +  AG+ D A ++   M E G R 
Sbjct: 164 LCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRP 223

Query: 172 SLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVL 230
           SL +FNT+++ LCK  ++E A  +F ++ R     D +SYN + +G+C     ++AL V 
Sbjct: 224 SLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVF 283

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
            EM  +G+ P++ T+  ++    RAG +E A     +M++R   ++  T+T ++ GF   
Sbjct: 284 AEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRN 343

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           G +  A      M    + PSV  YN +I   CK   ++ A  +  EM  KG  P+  TY
Sbjct: 344 GFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTY 403

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           + ++ G C  G+ + A E   +M      P+  TY+ LIR  C+   +    ELFEKM  
Sbjct: 404 STILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQ 463

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
               P+  TY  LI       K  ++  A  L  EM+ +G +P   T++ +++GL
Sbjct: 464 LGLQPDEFTYTTLIDG---HCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGL 515



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 110/393 (27%), Positives = 183/393 (46%), Gaps = 8/393 (2%)

Query: 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVS----AGKADR 156
           H P S   A  LAA       +  L+  ++ L   P  + F  + + Y S     G A  
Sbjct: 44  HLPLSLPAATRLAASFPPLPLLLALLSALRLLPSPPPPRPFDALIKSYASLSRGGGGASL 103

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG 216
           A          G   SL ++N +L  L           L  + R     +V +YN++   
Sbjct: 104 AAAALAFARSAGYAPSLLAYNAVLLALSDASLPSARRLLASMLRDGVAPNVYTYNILVRA 163

Query: 217 WCLVKRTNKALEVL-KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
            C   +  +AL V+  +M   G  PN+ TYN ++  + RAG+++ A R    M++     
Sbjct: 164 LCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRP 223

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
            +VT+ T+V+G    G ++ AR +FD M   G+ P   +YN ++   CK   +  A+ VF
Sbjct: 224 SLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVF 283

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
            EM  KG +P+  T+  +I  +C  G +ERA+  VG+M++     N  T+  LI  FC  
Sbjct: 284 AEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRN 343

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
           G ++  L   ++M      P++  YN+LI+      + D+   A +L+ EM  +G  P  
Sbjct: 344 GFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDE---ARELIHEMEAKGMKPDV 400

Query: 456 FTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            T++ +L+G   IG+   A E+ R   + G +P
Sbjct: 401 VTYSTILSGYCKIGDTDSAFELNRKMLKKGVVP 433



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 151/375 (40%), Gaps = 86/375 (22%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   TF  +      AG  +RAV +   M E G R +  +F  ++D  C+   ++ A   
Sbjct: 293 PDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLA 352

Query: 196 FKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            K  R  + +  V+ YNV+ NG+C + R ++A E++ EM  +G+ P++ TY+ +L GY +
Sbjct: 353 MKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCK 412

Query: 255 AGQIEEAWRFFLEMKKR------------------------KCEI-----------DVVT 279
            G  + A+    +M K+                         CE+           D  T
Sbjct: 413 IGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFT 472

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK--------------- 324
           YTT++ G    G +++A ++ D M+  GVLP V TY+ +I  L K               
Sbjct: 473 YTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLY 532

Query: 325 -----------------------------------KDSVENAILVFEEMVGKGYMPNSTT 349
                                              K  +  A  V++ M+ + +  + + 
Sbjct: 533 YEDPVPDNIKYEALMHCCRTAEFKSVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSV 592

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
           Y+V+I G C  G + +AL F  ++      PN  +   L+R   + G       + +++ 
Sbjct: 593 YSVLIHGHCRGGNIMKALSFHKQLLRCGFSPNSTSTISLVRGLFEEGMTVEADNVIQELL 652

Query: 410 SGVCLPNLDTYNILI 424
           +   L + +T   LI
Sbjct: 653 NCCSLADAETSKALI 667



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/281 (18%), Positives = 117/281 (41%), Gaps = 51/281 (18%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+H M++  + P   T++ I   Y   G  D A ++   M + G      ++++++  LC
Sbjct: 387 LIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLC 446

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           +E+++  A  LF K+ +   + D  +Y  + +G C      KAL +  EM+ +G+ P++ 
Sbjct: 447 EERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVV 506

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLE------------------------------------ 267
           TY++++ G  ++ + +EA R   +                                    
Sbjct: 507 TYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCCRTAEFKSVVALLKGFS 566

Query: 268 --------------MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
                         M  R  ++D   Y+ ++HG    G I +A +    ++  G  P+  
Sbjct: 567 MKGLMNQADKVYQSMLDRHWKLDGSVYSVLIHGHCRGGNIMKALSFHKQLLRCGFSPNST 626

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
           +  ++++ L ++     A  V +E++    + ++ T   +I
Sbjct: 627 STISLVRGLFEEGMTVEADNVIQELLNCCSLADAETSKALI 667



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 97/220 (44%), Gaps = 17/220 (7%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L  +M  L L P + T+  + + +   G   +A+ +   M + G    + +++ ++D L 
Sbjct: 457 LFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLS 516

Query: 185 KEKKVEKAYNL-FKVFRGKFKADVISYNVIAN---------------GWCLVKRTNKALE 228
           K  + ++A  L FK++      D I Y  + +               G+ +    N+A +
Sbjct: 517 KSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCCRTAEFKSVVALLKGFSMKGLMNQADK 576

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           V + M+DR    + + Y++++ G+ R G I +A  F  ++ +     +  +  ++V G  
Sbjct: 577 VYQSMLDRHWKLDGSVYSVLIHGHCRGGNIMKALSFHKQLLRCGFSPNSTSTISLVRGLF 636

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
             G    A NV   ++N   L    T  A+I  L +K+ V
Sbjct: 637 EEGMTVEADNVIQELLNCCSLADAETSKALID-LNRKEGV 675


>gi|326525088|dbj|BAK07814.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 539

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 113/409 (27%), Positives = 197/409 (48%), Gaps = 7/409 (1%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII 144
           +AL FF+ +         P+ +   IDL A+   +     L+  M+  S+  + +    I
Sbjct: 121 EALTFFHHVVPSLPADSLPALYAAMIDLLAKHHHFPLARHLLDEMRERSIPVSSQVILAI 180

Query: 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNS-FNTILDLLCKEKKVEKAYNLFKVFRGKF 203
             RYV AG +  A ++F  M E+G      +   ++L  L K++   +A  LF  ++  F
Sbjct: 181 IRRYVRAGMSPEASELFRRMEEYGAGVPDPAVLASLLGALSKKRLAGEAQALFDSYKSVF 240

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
             DV+ Y  + + WC     +KA +V  EM   G+ PN+ TY  V+   +RAGQ+  A  
Sbjct: 241 PPDVVLYTTLVHAWCRAGCLDKAEQVFAEMQQAGIMPNVYTYTSVIDAMYRAGQVPRAQE 300

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
              +M +  C  +  T+  I+      G  ++   V + M   G  P + TYN +++  C
Sbjct: 301 LLCQMMETGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCDPDIITYNFLMETHC 360

Query: 324 KK--DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
            K   +++ A+ V  +M+ KG +P+  T+N +++ +  TG +E A     RM++ +C+PN
Sbjct: 361 GKGQSNLDAAMKVLAKMIAKGCIPDCHTFNPMLKLVLGTGNVEAARRLYERMQELQCKPN 420

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
           V TYN+L++ F     ++  L + + M +    PN++TY  LI S   R    +   A  
Sbjct: 421 VVTYNLLMKLFNKEKSMDMVLRIKKDMDAQGVEPNVNTYGALIESFCGR---GNWRRAHA 477

Query: 442 LLIEMV-DRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPR 489
            L EMV ++   P K  ++ VL  L   G     +E++ L +  G + R
Sbjct: 478 TLREMVEEKSLKPTKPVYDMVLMLLRKAGQLRKHEELVELMADRGFIKR 526


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/407 (25%), Positives = 197/407 (48%), Gaps = 7/407 (1%)

Query: 88  HFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
           + F   S   +Y    S+F   I+  A   D+ T++ +  RMK       +K F ++   
Sbjct: 65  YIFKSASQMGSYKSGDSTFYSLIENYANSGDFGTLFQVFDRMKRERRVFIEKNFILVFRA 124

Query: 148 YVSAGKADRAVKIFLSM-HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG---KF 203
           Y  A   ++A+++F  M  E  CR+++ SFN++L+++ +E    +A   ++   G     
Sbjct: 125 YGKAHLPEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNI 184

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
             +V+S+N++    C +   ++A+EV +EM  +   P++ TY  ++ G  +  +I+EA  
Sbjct: 185 SPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVL 244

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
              EM+   C    VT+  +++G    G++ R   + D M   G +P+  TYN +I  LC
Sbjct: 245 LLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLC 304

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
            K  ++ A+ + + MV    +PN  TY  +I GL   G     +  +  +++     N  
Sbjct: 305 LKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEY 364

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
            Y+ LI       + E  + L++KM    C PN+  Y+ LI  +    K D+   A ++L
Sbjct: 365 AYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDE---AKEIL 421

Query: 444 IEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
            EMV++G  P  FT++ ++ G    GN   A  + +  ++   +P +
Sbjct: 422 CEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNE 468



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 177/344 (51%), Gaps = 6/344 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M+     P+  TF ++       G   R  K+  +M   GC  +  ++NTI++ LC
Sbjct: 245 LLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLC 304

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            + K++KA +L  ++   K   + ++Y  + NG     R+   + +L  + +RG + N  
Sbjct: 305 LKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEY 364

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            Y+ ++ G F+  + EEA   + +M ++ C+ ++V Y+ ++ G    G++  A+ +   M
Sbjct: 365 AYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEM 424

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           VN G  P+  TY+++I+   K  + + AI V++EM     +PN   Y+V+I GLC  G++
Sbjct: 425 VNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKL 484

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM--GSGVCLPNLDTYN 421
             A+     M      P+V  Y+ +I   C+AG +E GL+LF +M        P++ TYN
Sbjct: 485 REAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYN 544

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           IL+ ++    K + +  A  LL  M+DRG  P   T N  LN L
Sbjct: 545 ILLRALC---KQNSISHAIDLLNSMLDRGCNPDLITCNIFLNAL 585



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 171/340 (50%), Gaps = 6/340 (1%)

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
           ++ P   +F ++ +     G  DRA+++F  M    C   + ++ T++D LCKE ++++A
Sbjct: 183 NISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEA 242

Query: 193 YNLFKVFR--GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250
             L    +  G F + V ++NV+ NG C      +  +++  M  +G  PN  TYN ++ 
Sbjct: 243 VLLLDEMQIEGCFPSSV-TFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIIN 301

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
           G    G++++A      M   KC  + VTY T+++G    G      ++   +   G   
Sbjct: 302 GLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHA 361

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           +   Y+ +I  L K++  E A+ ++++MV KG  PN   Y+ +I GLC  G+++ A E +
Sbjct: 362 NEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEIL 421

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
             M +  C PN  TY+ LI+ F   G  ++ + ++++M    C+PN   Y++LI  +   
Sbjct: 422 CEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCED 481

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
            K   L  A  +   M+ RG  P    ++ +++GL   G+
Sbjct: 482 GK---LREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGS 518



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 148/269 (55%), Gaps = 3/269 (1%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           +L+ RM +    P   T+  +    V  G++   V +  S+ E G   +  +++T++  L
Sbjct: 314 SLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGL 373

Query: 184 CKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
            KE+K E+A  L+K    K  + +++ Y+ + +G C   + ++A E+L EMV++G  PN 
Sbjct: 374 FKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNA 433

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TY+ ++KG+F+ G  ++A R + EM K  C  + + Y+ ++HG    G+++ A  ++  
Sbjct: 434 FTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTH 493

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK--GYMPNSTTYNVVIRGLCHT 360
           M+  G+ P V  Y++MI  LC   SVE  + +F EM+ +     P+  TYN+++R LC  
Sbjct: 494 MLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQ 553

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILI 389
             +  A++ +  M D  C P++ T NI +
Sbjct: 554 NSISHAIDLLNSMLDRGCNPDLITCNIFL 582



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 64/324 (19%), Positives = 142/324 (43%), Gaps = 31/324 (9%)

Query: 71  LVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRT--VWTLVHR 128
           L++ ++K+    ++  +H   +LS      H  + + ++  ++   ++ ++     L  +
Sbjct: 334 LINGLVKQ--GRSVDGVH---LLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKK 388

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M      P    ++ + +     GK D A +I   M   GC  +  ++++++    K   
Sbjct: 389 MVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGN 448

Query: 189 VEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
            +KA  ++K + +     + I Y+V+ +G C   +  +A+ +   M+ RGL P++  Y+ 
Sbjct: 449 SQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSS 508

Query: 248 VLKGYFRAGQIEEAWRFFLEM--KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           ++ G   AG +E   + F EM  ++   + DVVTY  ++        I  A ++ + M++
Sbjct: 509 MIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLD 568

Query: 306 GGVLPSVATYNAMIQVL---------------------CKKDSVENAILVFEEMVGKGYM 344
            G  P + T N  +  L                      K+  +  A  + E M+ K   
Sbjct: 569 RGCNPDLITCNIFLNALREKLNPPQDGREFLDELVVRLHKRQRIVGAAKIIEVMLQKFLP 628

Query: 345 PNSTTYNVVIRGLCHTGEMERALE 368
           PN++T+  +I  LC   +++  ++
Sbjct: 629 PNASTWERIIPELCKPKKVQAIID 652


>gi|326513918|dbj|BAJ92109.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 459

 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 112/430 (26%), Positives = 189/430 (43%), Gaps = 42/430 (9%)

Query: 54  RTLTQTLHCPSLHWTPQLVDQIIKRLW-NHALKALHFFNILSYHPTYAHSPSSFDHAIDL 112
           RTL + L  PS  + P L  ++I+    +  L A  F   +   P ++ S   FD  +  
Sbjct: 64  RTLNR-LRLPS-PFPPDLALRVIRAAAPSEPLHAARFLAWIRAKPNFSPSADHFDALLLP 121

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
            AR R +  +WT    M++L L  +  TF+ +   Y  +  A++AV++F  +   GC Q+
Sbjct: 122 LARARLFTHLWTQASDMRALGLPLSPATFSAVISSYGHSRLAEQAVEVFNRLPHFGCPQT 181

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLK 231
              +N +LD LC       AY L + + R     D  +++ + + WC   +  +A   L 
Sbjct: 182 TEVYNALLDALCANGNFAGAYKLLRRMARKGVAPDRATFSTLVDAWCASGKLREAQAFLD 241

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
           +M  RG  P +   ++++ G  RAG++EEA  F L + K     DV T+ ++       G
Sbjct: 242 DMATRGFRPPVRGRDLLVDGLVRAGRLEEAKAFALRITKEGVLPDVATFNSLAQALCDAG 301

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
           +++ A  +     + G+ P ++TY  M+  + K   +E A  +F   +  G+ P  + Y 
Sbjct: 302 DVEFAVGLLADASSRGMCPDISTYKVMLPAVAKAGRIEEAFRLFYAAIEDGHRPFPSLYA 361

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
            +++ LC  G    A  F G MK     PN   Y +L++     G               
Sbjct: 362 AIVKALCKAGRFADAFAFFGDMKSKGHPPNRPVYVMLVKMCVRGGRF------------- 408

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
                LD  N                     L+EM + GF PR  TFN V++GL  +G  
Sbjct: 409 -----LDAANY--------------------LLEMSEAGFAPRAPTFNVVVDGLRHLGKH 443

Query: 472 GLAKEILRLQ 481
            LA+ + +L+
Sbjct: 444 DLARRMEQLE 453



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 63/153 (41%), Gaps = 3/153 (1%)

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
            +M   G   +  T++ VI    H+   E+A+E   R+    C    + YN L+   C  
Sbjct: 136 SDMRALGLPLSPATFSAVISSYGHSRLAEQAVEVFNRLPHFGCPQTTEVYNALLDALCAN 195

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
           G      +L  +M      P+  T++ L+ +     K   L  A   L +M  RGF P  
Sbjct: 196 GNFAGAYKLLRRMARKGVAPDRATFSTLVDAWCASGK---LREAQAFLDDMATRGFRPPV 252

Query: 456 FTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
              + +++GL+  G    AK      ++ G LP
Sbjct: 253 RGRDLLVDGLVRAGRLEEAKAFALRITKEGVLP 285


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/355 (29%), Positives = 179/355 (50%), Gaps = 18/355 (5%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE-HGCRQSLNSFNTILDLL 183
           L+ RM    L P Q T+  I +     G    A+ +   M E      ++  +NTI+D L
Sbjct: 204 LLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGL 263

Query: 184 CKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
            K+ +   A+NLF   + K    D+++YN + NG+C+  R + A ++L+EM++R +NP++
Sbjct: 264 WKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDV 323

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            T++ ++  + + G+  EA   + EM  R      VTY++++ GF     +  A ++F  
Sbjct: 324 VTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYL 383

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
               G  P + T+N +I   C+   V++ I +  EM   G + N+ TY  +I G C  G+
Sbjct: 384 TPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGD 443

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG------------S 410
           +  A + +  M      PNV T N L+   CD G+++  LE+F+ M             +
Sbjct: 444 LNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFN 503

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           GV  P++ TYNILI  +    K    L A +L  EM  RG +P   T++ +++GL
Sbjct: 504 GV-EPDVQTYNILICGLINEGK---FLEAEELYEEMPHRGIVPDTITYSSMIDGL 554



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 109/441 (24%), Positives = 196/441 (44%), Gaps = 45/441 (10%)

Query: 82  HALKALH-FFNILSYHPTYAHSPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSLGPTQ 138
           H +K L    ++  Y       PS  D    + +  R+     V +L  +M+ L +    
Sbjct: 57  HEIKGLDDAIDLFGYMVRSRPLPSVIDFCKLMGVVVRMGRPDVVISLHKKMEMLRMPCNA 116

Query: 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV 198
            +F I+ + + S  K   A+  F  + + G   ++ +FNT+L  LC E ++ +A +LF  
Sbjct: 117 YSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLFHQ 176

Query: 199 FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT-------------- 244
                K +V+++  + NG C   R  +A+ +L  M++ GL PN  T              
Sbjct: 177 M---CKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDT 233

Query: 245 ----------------------YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
                                 YN ++ G ++ G+  +A   F+EM++++   D+VTY  
Sbjct: 234 VSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNC 293

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           +++GF + G    A  +   M+   + P V T++A+I    K+     A  +++EM+ + 
Sbjct: 294 MINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRS 353

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
            +P++ TY+ +I G C    ++ A           C P++ T+N LI  +C A  ++ G+
Sbjct: 354 IIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGI 413

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           +L  +M     + N  TY  LI       +  DL  A  LL EM+  G  P   T N +L
Sbjct: 414 KLLHEMTEAGLVANTITYTTLIHGFC---QVGDLNAAQDLLQEMISSGVCPNVVTCNTLL 470

Query: 463 NGLLLIGNQGLAKEILRLQSR 483
           +GL   G    A E+ +   +
Sbjct: 471 DGLCDNGKLKDALEMFKAMQK 491



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 158/320 (49%), Gaps = 12/320 (3%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L   M   S+ P+  T++ + + +    + D A  +F      GC   + +FNT++   C
Sbjct: 345 LYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYC 404

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           + K+V+    L  ++      A+ I+Y  + +G+C V   N A ++L+EM+  G+ PN+ 
Sbjct: 405 RAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVV 464

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID-----------VVTYTTIVHGFGVVGE 292
           T N +L G    G++++A   F  M+K K +ID           V TY  ++ G    G+
Sbjct: 465 TCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGK 524

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
              A  +++ M + G++P   TY++MI  LCK+  ++ A  +F+ M  K + P+  T+N 
Sbjct: 525 FLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNT 584

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           +I G C  G ++  LE    M       +  TY  LI  F     I+  L++F++M S  
Sbjct: 585 LITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMISSG 644

Query: 413 CLPNLDTYNILISSMFVRKK 432
             P+  T   +++ ++ +++
Sbjct: 645 VYPDTITIRNMLTGLWSKEE 664



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 176/373 (47%), Gaps = 15/373 (4%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
            M+   + P   T+  +   +  +G+   A ++   M E      + +F+ +++   KE 
Sbjct: 278 EMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEG 337

Query: 188 KVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
           K  +A  L+ ++         ++Y+ + +G+C   R + A  +      +G +P++ T+N
Sbjct: 338 KFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFN 397

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
            ++ GY RA ++++  +   EM +     + +TYTT++HGF  VG++  A+++   M++ 
Sbjct: 398 TLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISS 457

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK-----------GYMPNSTTYNVVIR 355
           GV P+V T N ++  LC    +++A+ +F+ M              G  P+  TYN++I 
Sbjct: 458 GVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILIC 517

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
           GL + G+   A E    M      P+  TY+ +I   C    ++   ++F+ MGS    P
Sbjct: 518 GLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSP 577

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
           ++ T+N LI+        DD L   +L  EM  RG +    T+  ++ G   + N   A 
Sbjct: 578 DVVTFNTLITGYCKAGMVDDGL---ELFCEMGQRGIVADAITYITLIYGFRKVDNIDGAL 634

Query: 476 EILRLQSRCGRLP 488
           +I +     G  P
Sbjct: 635 DIFQEMISSGVYP 647



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 143/319 (44%), Gaps = 19/319 (5%)

Query: 63  PSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDYR 120
           PS      ++D   K+  N    A H F +    PT   SP   +F+  I    R +   
Sbjct: 356 PSTVTYSSMIDGFCKQ--NRLDAAEHMFYLT---PTKGCSPDIITFNTLIAGYCRAKRVD 410

Query: 121 TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180
               L+H M    L     T+  +   +   G  + A  +   M   G   ++ + NT+L
Sbjct: 411 DGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLL 470

Query: 181 DLLCKEKKVEKAYNLFKVFR------------GKFKADVISYNVIANGWCLVKRTNKALE 228
           D LC   K++ A  +FK  +               + DV +YN++  G     +  +A E
Sbjct: 471 DGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEE 530

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           + +EM  RG+ P+  TY+ ++ G  +  +++EA + F  M  +    DVVT+ T++ G+ 
Sbjct: 531 LYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYC 590

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G +     +F  M   G++    TY  +I    K D+++ A+ +F+EM+  G  P++ 
Sbjct: 591 KAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMISSGVYPDTI 650

Query: 349 TYNVVIRGLCHTGEMERAL 367
           T   ++ GL    E+ERA+
Sbjct: 651 TIRNMLTGLWSKEELERAV 669



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 127/268 (47%), Gaps = 8/268 (2%)

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           + +G+  +K  + A+++   MV     P++  +  ++    R G+ +       +M+  +
Sbjct: 52  LQSGFHEIKGLDDAIDLFGYMVRSRPLPSVIDFCKLMGVVVRMGRPDVVISLHKKMEMLR 111

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
              +  ++T ++  F    ++  A + F  +   G  P+V T+N ++  LC +D +  A+
Sbjct: 112 MPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEAL 171

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
            +F +M      PN  T+  ++ GLC  G +  A+  + RM +D  +PN  TY  ++   
Sbjct: 172 DLFHQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGM 227

Query: 393 CDAGEIERGLELFEKMGS-GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
           C  G+    L L  KM      +PN+  YN +I  ++   +  D   A  L IEM ++  
Sbjct: 228 CKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSD---AHNLFIEMQEKEI 284

Query: 452 MPRKFTFNRVLNGLLLIGNQGLAKEILR 479
            P   T+N ++NG  + G    A+++L+
Sbjct: 285 FPDIVTYNCMINGFCISGRWSDAEQLLQ 312


>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
          Length = 602

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 183/381 (48%), Gaps = 6/381 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ++   + R YR    L+  M++    P   T+ ++ +     G  D A+++  ++
Sbjct: 204 TYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNL 263

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
             HGC+ S  ++NT+L  LC  ++   A  L  ++ R     +  ++NV+    C     
Sbjct: 264 PSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLL 323

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A+++L++M   G   N+ TYN ++ G      ++ A     +MK   C+ D+VTY T+
Sbjct: 324 QQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTL 383

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G     +   A  + D M   G LP   T+N +I  LC+K  + +AI VF++M  KG 
Sbjct: 384 LKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGC 443

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PNS TY+ +I GL    ++++ALE    M      P+ + Y +L     D   IE  ++
Sbjct: 444 TPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPD-KIYQLLAECLNDDDTIEEAIQ 502

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
              K+      P+   YN ++  +    K++    A  ++  MV  G MP   T+  ++ 
Sbjct: 503 TVRKLQDSGISPHTVLYNAILLGLCRNGKTE---FAIDIMAYMVSSGCMPDDLTYVILIE 559

Query: 464 GLLLIGNQGLAKEIL-RLQSR 483
           GL   G    A+E+L +L SR
Sbjct: 560 GLAYEGYLNEARELLIKLCSR 580



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 166/345 (48%), Gaps = 10/345 (2%)

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
           A RL D R V      +  + + P   T+  +       G+   A+ +   M   GC   
Sbjct: 148 AGRLGDARRV------VGGMPVQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPD 201

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLK 231
           + ++N +L+  CK +   +A  L  + R +    + ++YNV+ +G C     + ALE+L+
Sbjct: 202 VVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLR 261

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
            +   G  P+   YN VLKG   A +  +A     EM +  C  +  T+  +++     G
Sbjct: 262 NLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKG 321

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
            +++A  + + M   G   ++ TYNA+I  LC++ +V+ A+ +  +M   G  P+  TYN
Sbjct: 322 LLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYN 381

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
            +++GLC   +   A E +  M  + C P+  T+N LI + C  G +   +E+F++M   
Sbjct: 382 TLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDK 441

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
            C PN  TY+ +IS +    K D  L   +L  EM  +GF P K 
Sbjct: 442 GCTPNSITYSTIISGLAKATKLDQAL---ELFNEMGHKGFNPDKI 483



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/312 (28%), Positives = 148/312 (47%), Gaps = 8/312 (2%)

Query: 177 NTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
           N ++  LC+  + + A  +  V      A V++Y  + +G+C   R   A  V+  M   
Sbjct: 107 NRLVRDLCRRGRPDDAERV--VGACGPAATVVAYGALTDGYCRAGRLGDARRVVGGMP-- 162

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
            + PN  TYN ++      GQ+ +A     +M  R C  DVVTY  ++         ++A
Sbjct: 163 -VQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQA 221

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
             + D M   G  P+  TYN ++  +C +  V++A+ +   +   G  P++  YN V++G
Sbjct: 222 MELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKG 281

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
           LC       A E V  M  + C PN  T+N++I   C  G +++ ++L EKM    C  N
Sbjct: 282 LCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTAN 341

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKE 476
           + TYN +I+ +  ++  D    A  LL +M   G  P   T+N +L GL        A+E
Sbjct: 342 IVTYNAIINGLCEQRNVDG---AMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEE 398

Query: 477 ILRLQSRCGRLP 488
           ++   ++ G LP
Sbjct: 399 LMDNMTQNGCLP 410



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 165/354 (46%), Gaps = 20/354 (5%)

Query: 90  FNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVW----TLVHRMKSLSLGPTQKTFAIIA 145
             +L   P++   PS+ ++   L       R  W     LV  M   +  P + TF ++ 
Sbjct: 257 LELLRNLPSHGCKPSTVNYNTVLKGLCSAER--WGDADELVTEMLRENCPPNEATFNVVI 314

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFK 204
                 G   +A+++   M +HGC  ++ ++N I++ LC+++ V+ A  L    +    K
Sbjct: 315 YSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCK 374

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
            D+++YN +  G C   +   A E++  M   G  P+  T+N ++    + G + +A   
Sbjct: 375 PDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEV 434

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
           F +M  + C  + +TY+TI+ G     ++ +A  +F+ M + G  P    Y  + + L  
Sbjct: 435 FKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPD-KIYQLLAECLND 493

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
            D++E AI    ++   G  P++  YN ++ GLC  G+ E A++ +  M    C P+  T
Sbjct: 494 DDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLT 553

Query: 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
           Y ILI      G +    EL  K+ S          ++L++S+    KS+ LL+
Sbjct: 554 YVILIEGLAYEGYLNEARELLIKLCS---------RDVLVNSLI---KSEALLL 595


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 113/408 (27%), Positives = 198/408 (48%), Gaps = 21/408 (5%)

Query: 91  NILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRM------------KSLSL---- 134
           +I S  P + HS  SF   I +  R R       ++ RM            +SL L    
Sbjct: 120 SITSNCPNFKHSLQSFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTYGN 179

Query: 135 -GPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
            G     F ++   YV A K     + F  +   G   S+N+ N++L  L K   V+ A+
Sbjct: 180 CGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAW 239

Query: 194 NLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
            +++ V R   + +V + N++ N  C  ++       L +M ++G+ P++ TYN ++  Y
Sbjct: 240 EIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAY 299

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
            R G +EEA+     M  +  +  V TY  I++G    G+  RA+ V D M+  G+ P  
Sbjct: 300 CRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDT 359

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
           ATYN ++   C+ D++ +A  +F+EM  +G +P+  +++ +I  L   G +++AL++   
Sbjct: 360 ATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRD 419

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           MK+    P+   Y ILI  FC  G +   L++ ++M    C+ ++ TYN +++ +   K 
Sbjct: 420 MKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKM 479

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
              L  A +L  EM +RG  P  +TF  ++NG    GN   A  +  +
Sbjct: 480 ---LSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEM 524



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 169/341 (49%), Gaps = 4/341 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           +   M S  + P   +F+ +       G  D+A+K F  M   G       +  ++   C
Sbjct: 381 IFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFC 440

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           +   + +A  +  ++       DV++YN I NG C  K  ++A E+  EM +RG+ P+  
Sbjct: 441 RNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFY 500

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           T+  ++ GY + G + +A   F  M +R  + DVVTY T++ GF    E+++   +++ M
Sbjct: 501 TFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDM 560

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           ++  + P+  +Y  +I   C    V  A  +++EMV KG+     T N +++G C  G  
Sbjct: 561 ISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNA 620

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
            +A EF+  M      P+  TYN LI  F     ++R   L  KM +   LP++ TYN++
Sbjct: 621 VKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVI 680

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           ++    + +  +   A  ++++M++RG  P + T+  ++NG
Sbjct: 681 LNGFSRQGRMQE---AELIMLKMIERGVNPDRSTYTSLING 718



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 180/375 (48%), Gaps = 4/375 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  I+   +   Y     ++  M  + + P   T+ I+            A +IF  M
Sbjct: 326 TYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEM 385

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRT 223
              G    L SF+ ++ LL K   +++A   F+  +    A D + Y ++  G+C     
Sbjct: 386 PSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVM 445

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           ++AL+V  EM+++G   ++ TYN +L G  +   + EA   F EM +R    D  T+TT+
Sbjct: 446 SEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTL 505

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++G+   G + +A  +F+ M+   + P V TYN +I   CK   +E    ++ +M+ +  
Sbjct: 506 INGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRI 565

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN  +Y ++I G C+ G +  A      M +   E  + T N +++ +C AG   +  E
Sbjct: 566 YPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADE 625

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
               M     +P+  TYN LI+  F+++++ D   A  L+ +M + G +P   T+N +LN
Sbjct: 626 FLSNMLLKGIVPDGITYNTLING-FIKEENMDRAFA--LVNKMENSGLLPDVITYNVILN 682

Query: 464 GLLLIGNQGLAKEIL 478
           G    G    A+ I+
Sbjct: 683 GFSRQGRMQEAELIM 697



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/357 (30%), Positives = 165/357 (46%), Gaps = 40/357 (11%)

Query: 159 KIFLS-MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANG 216
           K FLS M E G    + ++NT+++  C++  +E+A+ L     GK  K  V +YN I NG
Sbjct: 274 KSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIING 333

Query: 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL---------------------KGYF-- 253
            C   +  +A  VL EM+  G++P+  TYNI+L                     +G    
Sbjct: 334 LCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPD 393

Query: 254 ------------RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
                       + G +++A ++F +MK      D V YT ++ GF   G +  A  V D
Sbjct: 394 LVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRD 453

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M+  G +  V TYN ++  LCK+  +  A  +F EM  +G  P+  T+  +I G    G
Sbjct: 454 EMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDG 513

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
            M +A+     M     +P+V TYN LI  FC   E+E+  EL+  M S    PN  +Y 
Sbjct: 514 NMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYG 573

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           ILI+         +   A +L  EMV++GF     T N ++ G    GN   A E L
Sbjct: 574 ILINGYCNMGCVSE---AFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFL 627



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 153/355 (43%), Gaps = 38/355 (10%)

Query: 92  ILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149
           I    P+    P   SF   I L ++             MK+  L P    + I+   + 
Sbjct: 381 IFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFC 440

Query: 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKF---- 203
             G    A+K+   M E GC   + ++NTIL+ LCKEK + +A  LF     RG F    
Sbjct: 441 RNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFY 500

Query: 204 ------------------------------KADVISYNVIANGWCLVKRTNKALEVLKEM 233
                                         K DV++YN + +G+C      K  E+  +M
Sbjct: 501 TFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDM 560

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           + R + PN  +Y I++ GY   G + EA+R + EM ++  E  ++T  TIV G+   G  
Sbjct: 561 ISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNA 620

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
            +A      M+  G++P   TYN +I    K+++++ A  +  +M   G +P+  TYNV+
Sbjct: 621 VKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVI 680

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           + G    G M+ A   + +M +    P+  TY  LI        ++    + ++M
Sbjct: 681 LNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEM 735



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 117/258 (45%), Gaps = 36/258 (13%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L   M    + P   TF  +   Y   G  ++AV +F  M +   +  + ++NT++D  C
Sbjct: 486 LFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFC 545

Query: 185 KEKKVEKAYNLF-----------------------------KVFR-------GKFKADVI 208
           K  ++EK   L+                             + FR         F+A +I
Sbjct: 546 KGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATII 605

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           + N I  G+C      KA E L  M+ +G+ P+  TYN ++ G+ +   ++ A+    +M
Sbjct: 606 TCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKM 665

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
           +      DV+TY  I++GF   G ++ A  +   M+  GV P  +TY ++I     ++++
Sbjct: 666 ENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNL 725

Query: 329 ENAILVFEEMVGKGYMPN 346
           + A  V +EM+ +G++P+
Sbjct: 726 KEAFRVHDEMLQRGFVPD 743



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 88/216 (40%), Gaps = 38/216 (17%)

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
           C  + + +  +V  +    +++     F  + + G+  S+   N+++  L K   V+ A 
Sbjct: 180 CGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAW 239

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
            +++E+V  G   N  T N++I  LC   ++E    F+  M++    P+V TYN LI  +
Sbjct: 240 EIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAY 299

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
           C  G +E   E FE M S                                   M  +G  
Sbjct: 300 CRQGLLE---EAFELMDS-----------------------------------MSGKGLK 321

Query: 453 PRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           P  FT+N ++NGL   G    AK +L    + G  P
Sbjct: 322 PCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSP 357


>gi|15228825|ref|NP_188906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274241|sp|Q9LUJ4.1|PP248_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22670, mitochondrial; Flags: Precursor
 gi|9279685|dbj|BAB01242.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643142|gb|AEE76663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 562

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 112/422 (26%), Positives = 209/422 (49%), Gaps = 14/422 (3%)

Query: 68  TPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVH 127
           T  LV Q+++R  N   +A  FF   +    Y HS  +++  +D+  + R++  +W LV+
Sbjct: 131 TESLVLQVLRRFSNGWNQAYGFFIWANSQTGYVHSGHTYNAMVDVLGKCRNFDLMWELVN 190

Query: 128 RMKSLSLGP--TQKTFAIIAERYVSAGKADRAVKIFLSMHE-HGCRQSLNSFNTILDLLC 184
            M         T  T + +  R   +GK ++AV  FL M + +G +    + N+++D L 
Sbjct: 191 EMNKNEESKLVTLDTMSKVMRRLAKSGKYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALV 250

Query: 185 KEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
           KE  +E A+ +F       K D  ++N++ +G+C  ++ + A  ++  M      P++ T
Sbjct: 251 KENSIEHAHEVFLKLFDTIKPDARTFNILIHGFCKARKFDDARAMMDLMKVTEFTPDVVT 310

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           Y   ++ Y + G          EM++  C  +VVTYT ++H  G   ++  A  V++ M 
Sbjct: 311 YTSFVEAYCKEGDFRRVNEMLEEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMK 370

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
             G +P    Y+++I +L K    ++A  +FE+M  +G   +   YN +I    H    E
Sbjct: 371 EDGCVPDAKFYSSLIHILSKTGRFKDAAEIFEDMTNQGVRRDVLVYNTMISAALHHSRDE 430

Query: 365 RALEFVGRMKDDE---CEPNVQTYNILIRYFCDAGEIE-RGLELFEKMGSGVCLPNLDTY 420
            AL  + RM+D+E   C PNV+TY  L++  C   +++  G+ L   + + V + ++ TY
Sbjct: 431 MALRLLKRMEDEEGESCSPNVETYAPLLKMCCHKKKMKLLGILLHHMVKNDVSI-DVSTY 489

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
            +LI  + +  K ++   A     E V +G +PR  T   +++ L     + +A+  L++
Sbjct: 490 ILLIRGLCMSGKVEE---ACLFFEEAVRKGMVPRDSTCKMLVDEL---EKKNMAEAKLKI 543

Query: 481 QS 482
           QS
Sbjct: 544 QS 545


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 179/357 (50%), Gaps = 4/357 (1%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID   + +       L   M++  + P   T++ +     + G+   A ++   M E   
Sbjct: 263 IDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKI 322

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
              + +F+ ++D   KE K+ +A  L+ ++ +      +++Y+ + NG+C+  R ++A +
Sbjct: 323 NPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQ 382

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           + + MV +   P++ +Y+ ++KG+ +A +++E    F EM +R    + VTYTT++ G  
Sbjct: 383 MFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLF 442

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G+   A+ +F  MV+ GV P++ TYN ++  LCK   +E A++VFE +      P   
Sbjct: 443 QAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIY 502

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           TYN++I G+C  G++E   +    +     +P+V  YN +I  FC  G  E    LF++M
Sbjct: 503 TYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEM 562

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
                LPN   YN LI +   R +  D   + +L+ EM   GF     T   V N L
Sbjct: 563 KEDGTLPNSGCYNTLIRA---RLRDGDREASAELIKEMRSCGFAGDASTIGLVTNML 616



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 106/401 (26%), Positives = 184/401 (45%), Gaps = 39/401 (9%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            LV +M      P   TF  +        KA  AV +   M   GC+  L ++  +++ L
Sbjct: 172 ALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGL 231

Query: 184 CKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CK    + A+ L  K+ +GK +  V+ Y  I +G C  K  + AL + KEM  +G+ PN+
Sbjct: 232 CKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNV 291

Query: 243 TTY-----------------------------------NIVLKGYFRAGQIEEAWRFFLE 267
            TY                                   + ++  + + G++ EA + + E
Sbjct: 292 VTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDE 351

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M KR  +  +VTY+++++GF +   +  A+ +F+ MV+    P V +Y+ +I+  CK   
Sbjct: 352 MVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKR 411

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
           V+  + +F EM  +G + N+ TY  +I+GL   G+ + A E    M  D   PN+ TYN 
Sbjct: 412 VDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNT 471

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           L+   C  G++E+ + +FE +      P + TYNI+I  M    K +D      L   + 
Sbjct: 472 LLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVED---GWDLFCNLS 528

Query: 448 DRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            +G  P    +N +++G    G++  A  + +     G LP
Sbjct: 529 LKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLP 569



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 176/380 (46%), Gaps = 39/380 (10%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P+   F+ +        K D  + +   M   G   +  +++ +++  C+  ++  A  +
Sbjct: 79  PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYSILINCFCRRSQLPLALAV 138

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             K+ +  ++ ++++ + + NG+C  KR ++A+ ++ +M   G  PN  T+N ++ G F 
Sbjct: 139 LGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFL 198

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
             +  EA      M  + C+ D+VTY  +V+G    G+   A  + + M  G + P V  
Sbjct: 199 HNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLI 258

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE-----------M 363
           Y  +I  LCK   +++A+ +F+EM  KG  PN  TY+ +I  LC+ G            +
Sbjct: 259 YTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 318

Query: 364 ERALE------------FVGRMKDDECE------------PNVQTYNILIRYFCDAGEIE 399
           ER +             FV   K  E E            P++ TY+ LI  FC    ++
Sbjct: 319 ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLD 378

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
              ++FE M S  C P++ +Y+ LI      K+ D+ +   +L  EM  RG +    T+ 
Sbjct: 379 EAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGM---ELFREMSQRGLVGNTVTYT 435

Query: 460 RVLNGLLLIGNQGLAKEILR 479
            ++ GL   G+  +A+EI +
Sbjct: 436 TLIQGLFQAGDCDMAQEIFK 455



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 101/209 (48%), Gaps = 3/209 (1%)

Query: 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
           ++++A   F EM K +    ++ ++ ++     + +     ++ + M N G+  +  TY+
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYS 120

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
            +I   C++  +  A+ V  +M+  GY PN  T + ++ G CH+  +  A+  V +M   
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
             +PN  T+N LI       +    + L ++M +  C P+L TY ++++ +  R  +D  
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTD-- 238

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            +A  LL +M      P    +  +++GL
Sbjct: 239 -LAFILLNKMEQGKLEPGVLIYTTIIDGL 266


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/407 (25%), Positives = 196/407 (48%), Gaps = 7/407 (1%)

Query: 88  HFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
             F   S   +Y    S+F   I+  A   D+ T++ +  RMK       +K F ++   
Sbjct: 49  QIFKSASQMGSYKSGDSTFYSLIENYANSGDFGTLFQVFDRMKRERRVFIEKNFILVFRA 108

Query: 148 YVSAGKADRAVKIFLSM-HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG---KF 203
           Y  A   ++A+++F  M  E  CR+++ SFN++L+++ +E    +A   ++   G     
Sbjct: 109 YGKAHLPEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNI 168

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
             +V+S+N++    C +   ++A+EV +EM  +   P++ TY  ++ G  +  +I+EA  
Sbjct: 169 SPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVL 228

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
              EM+   C    VT+  +++G    G++ R   + D M   G +P+  TYN +I  LC
Sbjct: 229 LLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLC 288

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
            K  ++ A+ + + MV    +PN  TY  +I GL   G     +  +  +++     N  
Sbjct: 289 LKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEY 348

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
            Y+ LI       + E  + L++KM    C PN+  Y+ LI  +    K D+   A ++L
Sbjct: 349 AYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDE---AKEIL 405

Query: 444 IEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
            EMV++G  P  FT++ ++ G    GN   A  + +  ++   +P +
Sbjct: 406 CEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNE 452



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 177/344 (51%), Gaps = 6/344 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M+     P+  TF ++       G   R  K+  +M   GC  +  ++NTI++ LC
Sbjct: 229 LLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLC 288

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            + K++KA +L  ++   K   + ++Y  + NG     R+   + +L  + +RG + N  
Sbjct: 289 LKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEY 348

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            Y+ ++ G F+  + EEA   + +M ++ C+ ++V Y+ ++ G    G++  A+ +   M
Sbjct: 349 AYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEM 408

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           VN G  P+  TY+++I+   K  + + AI V++EM     +PN   Y+V+I GLC  G++
Sbjct: 409 VNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKL 468

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM--GSGVCLPNLDTYN 421
             A+     M      P+V  Y+ +I   C+AG +E GL+LF +M        P++ TYN
Sbjct: 469 REAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYN 528

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           IL+ ++    K + +  A  LL  M+DRG  P   T N  LN L
Sbjct: 529 ILLRALC---KQNSISHAIDLLNSMLDRGCNPDLITCNIFLNAL 569



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 171/340 (50%), Gaps = 6/340 (1%)

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
           ++ P   +F ++ +     G  DRA+++F  M    C   + ++ T++D LCKE ++++A
Sbjct: 167 NISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEA 226

Query: 193 YNLFKVFR--GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250
             L    +  G F + V ++NV+ NG C      +  +++  M  +G  PN  TYN ++ 
Sbjct: 227 VLLLDEMQIEGCFPSSV-TFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIIN 285

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
           G    G++++A      M   KC  + VTY T+++G    G      ++   +   G   
Sbjct: 286 GLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHA 345

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           +   Y+ +I  L K++  E A+ ++++MV KG  PN   Y+ +I GLC  G+++ A E +
Sbjct: 346 NEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEIL 405

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
             M +  C PN  TY+ LI+ F   G  ++ + ++++M    C+PN   Y++LI  +   
Sbjct: 406 CEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCED 465

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
            K   L  A  +   M+ RG  P    ++ +++GL   G+
Sbjct: 466 GK---LREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGS 502



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 148/269 (55%), Gaps = 3/269 (1%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           +L+ RM +    P   T+  +    V  G++   V +  S+ E G   +  +++T++  L
Sbjct: 298 SLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGL 357

Query: 184 CKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
            KE+K E+A  L+K    K  + +++ Y+ + +G C   + ++A E+L EMV++G  PN 
Sbjct: 358 FKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNA 417

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TY+ ++KG+F+ G  ++A R + EM K  C  + + Y+ ++HG    G+++ A  ++  
Sbjct: 418 FTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTH 477

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK--GYMPNSTTYNVVIRGLCHT 360
           M+  G+ P V  Y++MI  LC   SVE  + +F EM+ +     P+  TYN+++R LC  
Sbjct: 478 MLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQ 537

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILI 389
             +  A++ +  M D  C P++ T NI +
Sbjct: 538 NSISHAIDLLNSMLDRGCNPDLITCNIFL 566



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 64/324 (19%), Positives = 142/324 (43%), Gaps = 31/324 (9%)

Query: 71  LVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRT--VWTLVHR 128
           L++ ++K+    ++  +H   +LS      H  + + ++  ++   ++ ++     L  +
Sbjct: 318 LINGLVKQ--GRSVDGVH---LLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKK 372

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M      P    ++ + +     GK D A +I   M   GC  +  ++++++    K   
Sbjct: 373 MVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGN 432

Query: 189 VEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
            +KA  ++K + +     + I Y+V+ +G C   +  +A+ +   M+ RGL P++  Y+ 
Sbjct: 433 SQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSS 492

Query: 248 VLKGYFRAGQIEEAWRFFLEM--KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           ++ G   AG +E   + F EM  ++   + DVVTY  ++        I  A ++ + M++
Sbjct: 493 MIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLD 552

Query: 306 GGVLPSVATYNAMIQVL---------------------CKKDSVENAILVFEEMVGKGYM 344
            G  P + T N  +  L                      K+  +  A  + E M+ K   
Sbjct: 553 RGCNPDLITCNIFLNALREKLNPPQDGREFLDELVVRLHKRQRIVGAAKIIEVMLQKFLP 612

Query: 345 PNSTTYNVVIRGLCHTGEMERALE 368
           PN++T+  +I  LC   +++  ++
Sbjct: 613 PNASTWERIIPELCKPKKVQAIID 636


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 150/521 (28%), Positives = 223/521 (42%), Gaps = 52/521 (9%)

Query: 4   LLRKPPKNHLHFFCIYRGLSPLTTTSPAPLPPAAADPAALASLI-LTSTDPR-------- 54
           LL+K  KN LHF          +  +  P P     P  +  ++ L STDP         
Sbjct: 12  LLKK--KNPLHFLVFS------SVPTSYPFPKTTPFPNLVFKVLDLISTDPHWPKNPELN 63

Query: 55  TLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSF-------- 106
            L  TL        P  V +II    N    AL FF  +S    Y H    F        
Sbjct: 64  RLASTLR-------PHHVSKIINTHINTD-TALQFFYWISKRHFYKHDMGCFVSMLNRLV 115

Query: 107 --------DHAIDL---AARLRD-YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKA 154
                   DH   L   A R  D  + V   +H + S   G    T        +  GK 
Sbjct: 116 KDKILAPADHVRILMIKACRNEDELKRVTDFLHGISSSDSGLFGFTLYSFNTLLLQLGKF 175

Query: 155 D---RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISY 210
           D    A  ++  +   G + SL +FNT++++LCK+ KV++A  +F K+F+     D  +Y
Sbjct: 176 DMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTY 235

Query: 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
             +  G C  ++ +KA EV   MV  G NPN  TY+ ++ G    G+I EA     EM +
Sbjct: 236 TSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTE 295

Query: 271 RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
           +  E  V TYT  +     +G +  A N+   M   G  PSV TY A+I  L +   +E 
Sbjct: 296 KGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMEL 355

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           AI ++ +M+ +G +PN+ TYN +I  LC  G    AL+    M+      N QTYN +I+
Sbjct: 356 AIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIK 415

Query: 391 YFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450
                 +IE+ + +F KM      P + TYN LI     R   ++   A + L  M +  
Sbjct: 416 GLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNN---ATRFLYMMKESN 472

Query: 451 FMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
             P + T+  +++G    G    A        +CG  P Q+
Sbjct: 473 CEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQW 513



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 165/365 (45%), Gaps = 8/365 (2%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           LV  M      P+ +T+  I      AGK + A+ ++  M + G   +  ++N +++ LC
Sbjct: 324 LVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELC 383

Query: 185 KEKKVEKAYNLFKVFRGKFK-ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            E +   A  +F    G    A+  +YN I  G   +    KA+ V  +M+  G +P + 
Sbjct: 384 TEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVV 443

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN ++    + G +  A RF   MK+  CE D  TY  ++ GF   G++  A + F  M
Sbjct: 444 TYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEM 503

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           +  G+ P+  TY AMI   CK+  ++ A+ +FE M   G   +  TYN +I GL      
Sbjct: 504 LKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRF 563

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             A +F  +M +   +PN  TY  LI   C         ++F +M    CLPN  TY  L
Sbjct: 564 SEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSL 623

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I  +    K D    A + L E    G  P   T++ +++GL   G    A +++     
Sbjct: 624 IYGLCQEGKVD----AAERLTE---NGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKE 676

Query: 484 CGRLP 488
            G  P
Sbjct: 677 KGLSP 681



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 140/301 (46%), Gaps = 5/301 (1%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           +  + M    + P Q T+  + + Y   GK D A+ +F  M E+GC  S+ ++N I+  L
Sbjct: 498 SFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGL 557

Query: 184 CKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
            K  +  +A     K+     + + I+Y  + NG C    TN A ++  EM  +   PN 
Sbjct: 558 SKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNA 617

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TY  ++ G  + G+++ A R    + +  CE  + TY+T+V G    G    A  + + 
Sbjct: 618 HTYTSLIYGLCQEGKVDAAER----LTENGCEPTIDTYSTLVSGLCREGRSNEASQLVEN 673

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M   G+ PS+  Y +++   CK   V+ A+ +F  M  KG+ P+   Y V+I  LC    
Sbjct: 674 MKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSR 733

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
            E AL     +   +   ++  + +L+      G+ +  ++    M S  C P+L TY I
Sbjct: 734 AEEALNIFQSLLKKQWNSDLIVWTVLVDGLLQEGDSDLCMKFLYLMESRNCTPSLHTYII 793

Query: 423 L 423
           L
Sbjct: 794 L 794



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 180/395 (45%), Gaps = 17/395 (4%)

Query: 70  QLVDQIIKRLW--NHALKALHFFN-ILSYHPTYAHSPSSFDHAIDLAARL-RDYRTVWT- 124
           Q  +QIIK L+  +   KA+  FN +L   P    SP+   +   +   L R Y    T 
Sbjct: 408 QTYNQIIKGLFGMDDIEKAMVVFNKMLKDGP----SPTVVTYNTLIVENLKRGYLNNATR 463

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
            ++ MK  +  P ++T+  +   +   GK D A   F  M + G   +  ++  ++D  C
Sbjct: 464 FLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYC 523

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           KE K++ A +LF ++      A + +YN I +G     R ++A +   +M ++GL PN  
Sbjct: 524 KEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTI 583

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY  ++ G  +      A++ F EM+K+ C  +  TYT++++G    G++  A      +
Sbjct: 584 TYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAER----L 639

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G  P++ TY+ ++  LC++     A  + E M  KG  P+   Y  ++   C + ++
Sbjct: 640 TENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKV 699

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + ALE    M     +P++  Y +LI   C     E  L +F+ +       +L  + +L
Sbjct: 700 DCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDLIVWTVL 759

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           +  +     SD   +  K L  M  R   P   T+
Sbjct: 760 VDGLLQEGDSD---LCMKFLYLMESRNCTPSLHTY 791


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 111/407 (27%), Positives = 173/407 (42%), Gaps = 41/407 (10%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           A+ FF        + H   +++  ++L    ++Y   + +   M    + P   +F I+ 
Sbjct: 102 AISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILI 161

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF--------- 196
             +    +AD AV  F  M    C+  L++F  ++D LCK    EKA+ +F         
Sbjct: 162 RSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFV 221

Query: 197 ------------------------KVF----RGKFKADVISYNVIANGWCLVKRTNKALE 228
                                   +VF    +  F  D I+YN + +G        +AL+
Sbjct: 222 PPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALK 281

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           VL  M+ +   P   TY I++    +AG +E A   F  M       + V YT+++HGF 
Sbjct: 282 VLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFA 341

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G +K A ++FD MV  G  P V T+  MI  LCK  + E A   FEEM+  G  PN  
Sbjct: 342 KSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVV 401

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           TY  +I+GL   G +  A   +  M    C P+  TY  L+  FC  G ++   +L +++
Sbjct: 402 TYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDEL 461

Query: 409 GSGVCLPNLDTYNILISSMF----VRKKSDDLLVAGKLLIEMVDRGF 451
                 PNL  Y+ L+  +     V    DDL    K   E +D G 
Sbjct: 462 DKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGL 508



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 116/485 (23%), Positives = 207/485 (42%), Gaps = 93/485 (19%)

Query: 63  PSLHWTPQLVDQIIKR-LWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRT 121
           P LH    LVD + K  +   A +  H    + + P      ++    +  A R+++ R 
Sbjct: 187 PDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEARE 246

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
           V+    +M+     P    +  + +    AG A  A+K+  +M    C  +  ++  +++
Sbjct: 247 VFG---QMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVN 303

Query: 182 LLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
            LCK   +E+A  LF+V     F+ + + Y  + +G+    R  +A  +  EMV+ G  P
Sbjct: 304 SLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRP 363

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           ++ T+ +++ G  ++G  E+A + F EM +  C+ +VVTYTTI+ G   +G +  A  + 
Sbjct: 364 DVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIM 423

Query: 301 DGMVNGGVL-----------------------------------PSVATYNAMIQVLCKK 325
            GM+  G                                     P++  Y+++++ LC  
Sbjct: 424 KGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDG 483

Query: 326 DSVEN------------------------------------AILVFEEMVGKGYMPNSTT 349
            SVEN                                    A  +F+ MV +G  P++TT
Sbjct: 484 GSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATT 543

Query: 350 YNVVIRGLCHTGE--MERA------LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
           YN++I GLC + E  +ERA      LE VG +      P+  TY  L    C  GE++R 
Sbjct: 544 YNILINGLCRSRENRVERAFALLHDLEMVGYL------PDAVTYTPLCIGLCKIGEVDRA 597

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
           +++ E+  S     ++  Y  L + +  + + D    A  L  EMV +G  P    +  +
Sbjct: 598 VKMLEEASSRGWNADVVAYTALCTGLCYQGQVDR---AVSLFQEMVRQGGAPDAAAYCCI 654

Query: 462 LNGLL 466
           +NGL+
Sbjct: 655 INGLI 659



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 145/292 (49%), Gaps = 7/292 (2%)

Query: 178 TILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVK--RTNKALEVLKEMV 234
           +I+  LCK  ++++A  +F ++     K D  +YN++ NG C  +  R  +A  +L ++ 
Sbjct: 511 SIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLE 570

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
             G  P+  TY  +  G  + G+++ A +   E   R    DVV YT +  G    G++ 
Sbjct: 571 MVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVD 630

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
           RA ++F  MV  G  P  A Y  +I  L K   +E+A   F+EM+GKG  P   TY  ++
Sbjct: 631 RAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALV 690

Query: 355 RGLCHTGEMERALE-FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           + LCH G ++ A   F G +   E   +V  Y+ LI  FC A +++  L+LFE M S   
Sbjct: 691 QALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGN 750

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           +P   T   L   +    K++    A +LL EM   G  P   TF  +L+GL
Sbjct: 751 VPTAVTSASLFDGLVRSGKTEK---AQELLQEMAAGGSPPHAATFTAILDGL 799



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 151/316 (47%), Gaps = 5/316 (1%)

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           SFN ++    + ++ + A   F++  R + K D+ ++ ++ +  C      KA EV  EM
Sbjct: 156 SFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEM 215

Query: 234 VDRG-LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           +  G + P+   +  +++   +A +++EA   F +M+K     D + Y T++ G    G 
Sbjct: 216 MAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGH 275

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
            + A  V D M+    +P+  TY  ++  LCK  ++E A  +F  M   G+ PNS  Y  
Sbjct: 276 AQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTS 335

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           +I G   +G M+ A      M +    P+V T+ ++I   C +G  E+  + FE+M  G 
Sbjct: 336 LIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGG 395

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
           C PN+ TY  +I  +    K   +  A +++  M+  G  P   T+  +L+G   +G   
Sbjct: 396 CKPNVVTYTTIIQGL---SKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLD 452

Query: 473 LAKEILRLQSRCGRLP 488
            A ++L    +C   P
Sbjct: 453 EAAQLLDELDKCSSSP 468



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 170/360 (47%), Gaps = 12/360 (3%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN- 194
           P   T+  + + +   G+ D A ++   + +     +L  +++++  LC    VE   + 
Sbjct: 433 PDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDD 492

Query: 195 LFKVFRGKFKADVISYNVIAN---GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
           LF+  + K  A+ +   +  +   G C   R ++A  + + MV  G  P+ TTYNI++ G
Sbjct: 493 LFE--QSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILING 550

Query: 252 YFRA--GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
             R+   ++E A+    +++      D VTYT +  G   +GE+ RA  + +   + G  
Sbjct: 551 LCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWN 610

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
             V  Y A+   LC +  V+ A+ +F+EMV +G  P++  Y  +I GL    ++E A +F
Sbjct: 611 ADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKF 670

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISSMF 428
              M     +P V TY  L++  C AG ++     FE M   G  + ++  Y+ LI    
Sbjct: 671 FDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFC 730

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
              K D  L   KL  +M+ RG +P   T   + +GL+  G    A+E+L+  +  G  P
Sbjct: 731 KALKVDAAL---KLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPP 787



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 86/272 (31%), Positives = 136/272 (50%), Gaps = 4/272 (1%)

Query: 200 RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
           +  F+ DV +YN + N     K  ++   + +EM+  G+ PN  ++NI+++ + R  + +
Sbjct: 112 QAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRAD 171

Query: 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF-DGMVNGGVLPSVATYNAM 318
           +A   F  MK+++C+ D+ T+  +V      G  ++A  VF + M  G V P  A + AM
Sbjct: 172 DAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAM 231

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           ++ L K   V+ A  VF +M   G+ P++  YN +I GL   G  + AL+ +  M    C
Sbjct: 232 VRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKAC 291

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
            P   TY IL+   C AG +ER  ELF  M +    PN   Y  LI       KS  +  
Sbjct: 292 VPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGF---AKSGRMKE 348

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
           A  L  EMV+ G+ P   T   +++GL   GN
Sbjct: 349 ACSLFDEMVEAGYRPDVITHTVMIDGLCKSGN 380



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 141/295 (47%), Gaps = 39/295 (13%)

Query: 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK--EKKVEKAYNLF------------- 196
           G+ D A +IF  M   GC+    ++N +++ LC+  E +VE+A+ L              
Sbjct: 520 GRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAV 579

Query: 197 -------------KVFRG----------KFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
                        +V R            + ADV++Y  +  G C   + ++A+ + +EM
Sbjct: 580 TYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEM 639

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           V +G  P+   Y  ++ G  +  ++E+A +FF EM  +  +  V TYT +V      G +
Sbjct: 640 VRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNV 699

Query: 294 KRARNVFDGMV-NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
             A + F+GM+  G ++ SV  Y+A+I   CK   V+ A+ +FE+M+ +G +P + T   
Sbjct: 700 DEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSAS 759

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
           +  GL  +G+ E+A E +  M      P+  T+  ++     + E  + L+L ++
Sbjct: 760 LFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDESGKLLKLVQE 814



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 129/271 (47%), Gaps = 4/271 (1%)

Query: 104 SSFDHAIDLAARLRDYRT--VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           ++++  I+   R R+ R    + L+H ++ +   P   T+  +       G+ DRAVK+ 
Sbjct: 542 TTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKML 601

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLV 220
                 G    + ++  +   LC + +V++A +LF+ + R     D  +Y  I NG    
Sbjct: 602 EEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKG 661

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI-DVVT 279
           K+   A +   EM+ +G  P + TY  +++    AG ++EA+  F  M  R   +  V+ 
Sbjct: 662 KKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVGSVMI 721

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y  ++HGF    ++  A  +F+ M++ G +P+  T  ++   L +    E A  + +EM 
Sbjct: 722 YDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMA 781

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
             G  P++ T+  ++ GL  + E  + L+ V
Sbjct: 782 AGGSPPHAATFTAILDGLRKSDESGKLLKLV 812



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 86/177 (48%), Gaps = 7/177 (3%)

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
             G    V TYN ++ +L  + +      + EEM+  G  PN+ ++N++IR    T   +
Sbjct: 112 QAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRAD 171

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF-EKMGSGVCLPNLDTYNIL 423
            A+     MK   C+P++ T+ IL+   C AG  E+  E+F E M  G   P+   +  +
Sbjct: 172 DAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAM 231

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           + ++   K+  +   A ++  +M   GF P    +N +++GL      G A+E L++
Sbjct: 232 VRTLLKAKRVKE---AREVFGQMEKCGFPPDAIAYNTMIDGL---AKAGHAQEALKV 282


>gi|359487106|ref|XP_002274114.2| PREDICTED: pentatricopeptide repeat-containing protein At1g80550,
           mitochondrial-like [Vitis vinifera]
          Length = 571

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 120/419 (28%), Positives = 197/419 (47%), Gaps = 38/419 (9%)

Query: 49  TSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDH 108
           TS D  T+ QTL C +  W                 +AL FF+ +     + H+  +++ 
Sbjct: 174 TSFDHSTVRQTLSCYANDWK----------------RALEFFDWVQTQCGFNHTTDTYNG 217

Query: 109 AIDLAARLRDYRTVWTLVHRMKSLSLG-PTQKTFAIIAERYVSAGKADRAVKIFLSMHEH 167
            ID+  +  ++  +W L+ RMK+  +  P   TF  + +RY +A   + A+  +    E 
Sbjct: 218 MIDILGKFFEFDLIWVLIQRMKADPVAYPNHVTFRFVFKRYAAAHLVEEAMNAYYRTEEF 277

Query: 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK---FKADVISYNVIANGWCLVKRTN 224
             R    S++ ++D LC+ K V +A  LF +   K   F  DV  YN+I  GW  +    
Sbjct: 278 NLRDE-TSYSNLIDALCEYKHVIEAEELF-LKESKDLVFNDDVKIYNIILRGWFKMGWWK 335

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           K  E  +EM  RG+  +L +Y+I +    ++G+   A + + EMKK+   +DVV Y T++
Sbjct: 336 KCREFWEEMDRRGVCKSLYSYSIYMDIQCKSGKPWRAVKLYKEMKKKGIRLDVVAYNTVI 395

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
              G+   +  +  VF  M   G  P+V TYN +I++LC+   +  A  VF++M  KGY 
Sbjct: 396 RAIGLSEGVDFSIRVFREMKEVGCEPNVVTYNTIIKLLCENGRIREAYGVFDQMREKGYA 455

Query: 345 PNSTTYNVVIRGLCHTGEMERA---LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
           PN  TY+      C  G +E+    L    RM +    P + TY +L++ F   G +   
Sbjct: 456 PNVITYH------CFFGCIEKPKQILRTFDRMINSGVRPRMDTYVMLMKKFGRWGFLRPV 509

Query: 402 LELFEKMGSGVCLPNLDTYNILISSM-------FVRKKSDDLLVAGKLLIEMVDRGFMP 453
             +++KM    C P+   YN LI ++         RK  +++L  G      VD G  P
Sbjct: 510 FIVWKKMEEQGCSPDACAYNALIDALVQKGMVDLARKYEEEMLAKGLSAKPRVDLGTKP 568


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 193/394 (48%), Gaps = 16/394 (4%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLS-LGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           ++   +D   ++ D  +   L+ +M+ +S + P    ++ I +     G+   A  +F  
Sbjct: 214 TYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSE 273

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKR 222
           M E G   +L ++N +++  C   +  +A  L + +F  K   DV++++V+ N      +
Sbjct: 274 MQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGK 333

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
             +A E+  EM+ RG+ PN  TYN ++ G+ +  +++ A R F  M  + C  DV+T++ 
Sbjct: 334 FFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSI 393

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++ G+     +     +   M   G++ +  TY  +I   C+  ++  A+ + +EM+  G
Sbjct: 394 LIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSG 453

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD-----------DECEPNVQTYNILIRY 391
             PN  T N ++ GLC+ G+++ ALE    M+            ++ EP+VQTYNILI  
Sbjct: 454 VCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICG 513

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
             + G+     EL+E+M     +P+  TYN +I  +  + + D+   A ++   M  +GF
Sbjct: 514 LINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDE---ATQMFDSMGSKGF 570

Query: 452 MPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
            P   TF  ++NG   +G  G   E+     R G
Sbjct: 571 SPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRG 604



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 110/431 (25%), Positives = 188/431 (43%), Gaps = 59/431 (13%)

Query: 83  ALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           AL        L +HP+   + S+  H + +  R+ +    +  + +       P    F 
Sbjct: 130 ALSTFGKITKLGFHPSLV-TFSTLLHGLCVEDRVSEALHFFHQICK-------PNVIAFT 181

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-- 200
            +       G+   AV +   M E G + +  ++ TI+D +CK      A NL +     
Sbjct: 182 TLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEV 241

Query: 201 GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
            + K +V+ Y+ I +G     R   A  +  EM ++G++PNL TYN ++ G+  +G+  E
Sbjct: 242 SRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSE 301

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
           A R   EM +RK   DVVT++ +++     G+   A  +++ M+  G++P+  TYN+MI 
Sbjct: 302 AQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMID 361

Query: 321 VL-----------------------------------CKKDSVENAILVFEEMVGKGYMP 345
                                                C    V++ + +  EM  +G + 
Sbjct: 362 GFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVA 421

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           N+ TY  +I G C  G +  AL+ +  M      PNV T N L+   C+ G+++  LE+F
Sbjct: 422 NTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMF 481

Query: 406 EKMGSGV-----------CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
           + M                 P++ TYNILI  +    K  +   A +L  EM  RG +P 
Sbjct: 482 KVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSE---AEELYEEMPHRGLVPD 538

Query: 455 KFTFNRVLNGL 465
             T+N V++GL
Sbjct: 539 TITYNSVIDGL 549



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 159/320 (49%), Gaps = 12/320 (3%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L + M    + P   T+  + + +    + D A ++F  M   GC   + +F+ ++D  C
Sbjct: 340 LYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYC 399

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
             K+V+    L  ++ R    A+ I+Y  + +G+C +   N AL++L+EM+  G+ PN+ 
Sbjct: 400 GAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVV 459

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID-----------VVTYTTIVHGFGVVGE 292
           T N +L G    G++++A   F  M+K K ++D           V TY  ++ G    G+
Sbjct: 460 TCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGK 519

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
              A  +++ M + G++P   TYN++I  LCK+  ++ A  +F+ M  KG+ P+  T+  
Sbjct: 520 FSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTT 579

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           +I G C  G +   LE    M       N  TY  LI  FC  G I   L++F++M S  
Sbjct: 580 LINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSG 639

Query: 413 CLPNLDTYNILISSMFVRKK 432
             P+  T   +++ ++ +++
Sbjct: 640 VYPDTITIRNMLTGLWSKEE 659



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 107/384 (27%), Positives = 178/384 (46%), Gaps = 7/384 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           F   + +  R+     V +L  +M+   +     +F I+ + + S  K   A+  F  + 
Sbjct: 79  FCKLLGVVVRMERPDVVISLHRKMEMRRIPCNIYSFTILIKCFCSCSKLPFALSTFGKIT 138

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNK 225
           + G   SL +F+T+L  LC E +V +A + F       K +VI++  + NG C   R  +
Sbjct: 139 KLGFHPSLVTFSTLLHGLCVEDRVSEALHFFHQI---CKPNVIAFTTLMNGLCREGRVVE 195

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK-RKCEIDVVTYTTIV 284
           A+ +L  MV+ GL PN  TY  ++ G  + G    A     +M++  + + +VV Y+ I+
Sbjct: 196 AVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAII 255

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            G    G    A+N+F  M   G+ P++ TYN MI   C       A  +  EM  +   
Sbjct: 256 DGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMS 315

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           P+  T++V+I  L   G+   A E    M      PN  TYN +I  F     ++    +
Sbjct: 316 PDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERM 375

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           F  M +  C P++ T++ILI      K+ DD +   KLL EM  RG +    T+  +++G
Sbjct: 376 FYLMATKGCSPDVITFSILIDGYCGAKRVDDGM---KLLHEMSRRGLVANTITYTTLIHG 432

Query: 465 LLLIGNQGLAKEILRLQSRCGRLP 488
              +GN   A ++L+     G  P
Sbjct: 433 FCQLGNLNAALDLLQEMISSGVCP 456



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 128/256 (50%), Gaps = 12/256 (4%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+H M    L     T+  +   +   G  + A+ +   M   G   ++ + NT+LD LC
Sbjct: 410 LLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLC 469

Query: 185 KEKKVEKAYNLFKVFR------------GKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
              K++ A  +FKV +               + DV +YN++  G     + ++A E+ +E
Sbjct: 470 NNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEE 529

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M  RGL P+  TYN V+ G  +  +++EA + F  M  +    DVVT+TT+++G+  VG 
Sbjct: 530 MPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGR 589

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           +     VF  M   G++ +  TY  +I   C+  ++  A+ +F+EM+  G  P++ T   
Sbjct: 590 VGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGVYPDTITIRN 649

Query: 353 VIRGLCHTGEMERALE 368
           ++ GL    E++RA++
Sbjct: 650 MLTGLWSKEELKRAVQ 665


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 170/336 (50%), Gaps = 4/336 (1%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           ++  + E    +G+ D     +  M   GC  +  ++  +L  LC+ ++ E+A ++F+  
Sbjct: 19  SYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGM 78

Query: 200 RGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
             +    +V SY+++  G C  ++ ++A E+L EM+D G  PN+ TY  +L G  + G++
Sbjct: 79  AAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKL 138

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           +EA   F  M  R C  D V Y  ++ GF   G++  A  +F+ M+  G +P+V TYN++
Sbjct: 139 KEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSL 198

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           +    +K        +F++M+ +G +PN  T+N ++ G C  G+M  A      M+   C
Sbjct: 199 LSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGC 258

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
            P+V +YN L+R  C  G+      L  +M      P++ +YNILI       KS  L  
Sbjct: 259 PPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGY---SKSGALDH 315

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           A KL  E+   G  P  F+++ +++ L   G  G A
Sbjct: 316 AIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAA 351



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 182/368 (49%), Gaps = 4/368 (1%)

Query: 87  LHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAE 146
           + FF        Y H   S+++ +++ A+      V+   + M      P   T+  +  
Sbjct: 1   MAFFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLR 60

Query: 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKA 205
               A + + A  +F  M   GC  ++ S++ ++  LC+ +KV++A  L  ++  G  + 
Sbjct: 61  SLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQP 120

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           +V++Y  + +G C + +  +A+++   MV RG  P+   YN+++ G+ + G + EA+R F
Sbjct: 121 NVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLF 180

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
            EM ++ C   V TY +++ GF   GE  R +++F  M+  G +P++ T+N ++   CK 
Sbjct: 181 EEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKM 240

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
             +  A  +F EM   G  P+  +YN ++RG+C  G+   A   +  M      P++ +Y
Sbjct: 241 GDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSY 300

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           NILI  +  +G ++  ++LF ++      P+  +Y+ +I  +    K     V  K   +
Sbjct: 301 NILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFK---D 357

Query: 446 MVDRGFMP 453
           M+  G  P
Sbjct: 358 MIANGSAP 365



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 170/355 (47%), Gaps = 6/355 (1%)

Query: 102 SPSSFDHAIDLAARLRDYRT--VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           SP+ F ++I +A   R  +      L++ M      P   T+  +       GK   AV 
Sbjct: 84  SPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVD 143

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWC 218
           +F  M   GC      +N ++D   K+  + +AY LF+ +        V +YN + +G+ 
Sbjct: 144 LFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFS 203

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
                 +   + K+M+ +G  PN+ T+N +L G+ + G + EA R FLEM+   C  DVV
Sbjct: 204 RKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVV 263

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           +Y T++ G    G+   A+ +   M+  GV P + +YN +I    K  ++++AI +F E+
Sbjct: 264 SYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEI 323

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
              G  P++ +Y+ +I  LC  G++  A      M  +   P+      L+   C    +
Sbjct: 324 PKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERL 383

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
               ELF+ M    C+P +  YN+L+  +   K+SDD+    ++  E+ +RGF P
Sbjct: 384 TESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVC---EIFHELTERGFSP 435



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 136/286 (47%), Gaps = 3/286 (1%)

Query: 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262
           +    +SYN +        R +       +M+  G  PN  TY  +L+   +A + EEA 
Sbjct: 13  YNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEAR 72

Query: 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322
             F  M  + C  +V +Y+ ++ G     ++  A  + + M++GG  P+V TY +++  L
Sbjct: 73  SVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGL 132

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
           CK   ++ A+ +F  MV +G  P+   YNV+I G    G+M  A      M +  C P V
Sbjct: 133 CKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTV 192

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
            TYN L+  F   GE  R   LF+ M    C+PN+ T+N L+       K  D++ A +L
Sbjct: 193 FTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFC---KMGDMVEAHRL 249

Query: 443 LIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            +EM   G  P   ++N ++ G+   G    A+ +LR   R G  P
Sbjct: 250 FLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGP 295



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 107/214 (50%), Gaps = 3/214 (1%)

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           ++Y  ++      G        ++ M+  G +P+  TY  +++ LC+    E A  VF  
Sbjct: 18  LSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRG 77

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M  +G  PN  +Y+++I GLC   +++ A E +  M D   +PNV TY  L+   C  G+
Sbjct: 78  MAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGK 137

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           ++  ++LF +M    C P+   YN+LI       K  D+  A +L  EM+++G +P  FT
Sbjct: 138 LKEAVDLFSRMVYRGCPPDGVVYNVLIDGF---SKKGDMGEAYRLFEEMLEKGCIPTVFT 194

Query: 458 FNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           +N +L+G    G  G  + + +   R G +P  F
Sbjct: 195 YNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIF 228



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 116/254 (45%), Gaps = 1/254 (0%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
           +R  ++  V +L   M      P   TF  + + +   G    A ++FL M   GC   +
Sbjct: 203 SRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDV 262

Query: 174 NSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
            S+NT++  +C + K  +A  L + + R     D++SYN++ +G+      + A+++  E
Sbjct: 263 VSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYE 322

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           +   GL P+  +Y+ ++    RAG++  A+  F +M       D      +V G      
Sbjct: 323 IPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGER 382

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           +  +  +F  MV    +P +  YN ++  LCK    ++   +F E+  +G+ P+     V
Sbjct: 383 LTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKV 442

Query: 353 VIRGLCHTGEMERA 366
           ++  L  + + E A
Sbjct: 443 ILETLRRSDDKEAA 456


>gi|218194637|gb|EEC77064.1| hypothetical protein OsI_15455 [Oryza sativa Indica Group]
          Length = 864

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 124/469 (26%), Positives = 218/469 (46%), Gaps = 66/469 (14%)

Query: 68  TPQLVDQIIKRL--W---NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTV 122
            P L  ++ KR+  W    H+   +H +NIL                ID   R+      
Sbjct: 132 APALAIELFKRMDRWACPRHSPPTIHTYNIL----------------IDCYRRVHRPDLG 175

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
             +V R+    LGP   ++++I   +V  G+ D+A  +FL M E G    +   N+I+  
Sbjct: 176 LAIVGRLLKNGLGPDDFSYSLIY-GFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKE 234

Query: 183 LCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           LCK K+++KA ++  K+       D+ +Y++I +G C  K  +KA  VL++MV+ G  PN
Sbjct: 235 LCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPN 294

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMK-------------------------KRKC--- 273
             TYN ++ GY  +G   E+ R F +M                          + KC   
Sbjct: 295 SITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFD 354

Query: 274 -------EIDVVTYTTIVHGFGVVGE--IKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
                  + D+++Y+T++HG+    +  +    N+F+ M+  G+ P+   +N +I    +
Sbjct: 355 SMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYAR 414

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
              ++ A+L+FE+M  KG +P++ T+  VI  LC  G ++ AL     M D    P+   
Sbjct: 415 CGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAV 474

Query: 385 YNILIRYFCDAGEIERGLELF-EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
           Y  LI+  C+ GE+ +  EL  E M   +  P +  ++ +I+++    +    +  GK +
Sbjct: 475 YGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGR----VAEGKDI 530

Query: 444 IEM-VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           ++M V  G  P   TFN ++ G  L+GN   A  +L   +  G  P  +
Sbjct: 531 MDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCY 579



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 110/468 (23%), Positives = 190/468 (40%), Gaps = 89/468 (19%)

Query: 102 SPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           +P  F ++  ID   + +       ++ +M      P   T+  +   Y  +G  + +V+
Sbjct: 257 APDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVR 316

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGW 217
           +F  M   G   ++++ N+ +  L K  +  +A  +F   V +G  K D+ISY+ + +G+
Sbjct: 317 VFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGP-KPDIISYSTMLHGY 375

Query: 218 ------CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
                 CL    N    +   M+ +G+ PN   +NI++  Y R G +++A   F +M+ +
Sbjct: 376 ATATDSCLADVHN----IFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNK 431

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV---------- 321
               D VT+ T++     +G +  A + F+ MV+ GV PS A Y  +IQ           
Sbjct: 432 GMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKA 491

Query: 322 --------------------------LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
                                     LCK+  V     + + MV  G  PN  T+N ++ 
Sbjct: 492 KELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLME 551

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
           G C  G ME A   +  M     EPN   Y  L+  +C  G I+  L +F  M      P
Sbjct: 552 GYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKP 611

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG------------------------- 450
               Y+I++  +F  +++     A K+  EM++ G                         
Sbjct: 612 TSVLYSIILHGLFQARRTT---AAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEAN 668

Query: 451 -------FMPRKF---TFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
                   M  KF   TFN V++ +  +G +  AKE+    S  G +P
Sbjct: 669 MLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVP 716



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 166/354 (46%), Gaps = 10/354 (2%)

Query: 116 LRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS 175
           L D   ++ L   M +  + P +  F I+   Y   G  D+A+ IF  M   G      +
Sbjct: 383 LADVHNIFNL---MLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVT 439

Query: 176 FNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           F T++  LC+  +++ A + F   V  G   ++ + Y  +  G C      KA E++ EM
Sbjct: 440 FATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAV-YGCLIQGCCNHGELVKAKELISEM 498

Query: 234 VDRGL-NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           +++ +  P +  ++ ++    + G++ E       M +     +VVT+ +++ G+ +VG 
Sbjct: 499 MNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGN 558

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           ++ A  + D M + G+ P+   Y  ++   CK   +++A+ VF +M+ KG  P S  Y++
Sbjct: 559 MEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSI 618

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           ++ GL        A +    M +     ++ TY +++   C     +    L EK+ +  
Sbjct: 619 ILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMN 678

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
              ++ T+NI+IS+MF   +  +   A +L   +   G +P   T++ ++  L+
Sbjct: 679 VKFDIITFNIVISAMFKVGRRQE---AKELFDAISTYGLVPNIQTYSMMITNLI 729



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 165/380 (43%), Gaps = 7/380 (1%)

Query: 91  NILSYHPTYAHSPSS--FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERY 148
           NI +   T   +P+   F+  I+  AR         +   M++  + P   TFA +    
Sbjct: 388 NIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSL 447

Query: 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF--KAD 206
              G+ D A+  F  M + G   S   +  ++   C   ++ KA  L      K      
Sbjct: 448 CRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPG 507

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           V  ++ I N  C   R  +  +++  MV  G  PN+ T+N +++GY   G +EEA+    
Sbjct: 508 VKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLD 567

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
            M     E +   Y T+V G+   G I  A  VF  M++ GV P+   Y+ ++  L +  
Sbjct: 568 AMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQAR 627

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
               A  +F EM+  G   +  TY VV+ GLC     + A   + ++     + ++ T+N
Sbjct: 628 RTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFN 687

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
           I+I      G  +   ELF+ + +   +PN+ TY+++I+++   +  ++   A  L I +
Sbjct: 688 IVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEE---ADNLFISV 744

Query: 447 VDRGFMPRKFTFNRVLNGLL 466
              G        N ++  LL
Sbjct: 745 EKSGHASDSRLLNHIVRMLL 764



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 127/265 (47%), Gaps = 1/265 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   TF  + E Y   G  + A  +  +M   G   +   + T++D  CK  +++ A  +
Sbjct: 541 PNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTV 600

Query: 196 FK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F+ +     K   + Y++I +G    +RT  A ++  EM++ G   ++ TY +VL G  R
Sbjct: 601 FRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCR 660

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
               +EA     ++     + D++T+  ++     VG  + A+ +FD +   G++P++ T
Sbjct: 661 NNCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQT 720

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y+ MI  L K++S E A  +F  +   G+  +S   N ++R L +  E+ +A  ++  + 
Sbjct: 721 YSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIVRMLLNKAEVAKASNYLSIIG 780

Query: 375 DDECEPNVQTYNILIRYFCDAGEIE 399
           ++       T ++L   F   G I+
Sbjct: 781 ENNLTLEASTISLLASLFSREGMIK 805


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 112/434 (25%), Positives = 200/434 (46%), Gaps = 22/434 (5%)

Query: 74  QIIKRLWNHALKALHFFNILSYH-PTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSL 132
           Q++ R        L F  ++SYH P + HS  S    +    R R        + RM   
Sbjct: 105 QVLFRCRGDLHLGLKFIGLVSYHFPNFKHSSLSLSAMVHFLVRGRRLSEAQACILRMVRK 164

Query: 133 S-----------------LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS 175
           S                  G     + ++   YV A K     + F  +   G   S+N+
Sbjct: 165 SGVSRVKVVESLISTCFYFGSVGLIYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINA 224

Query: 176 FNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
            N +L  L +   V+ A+ ++ +V RG  + +V + N++ N  C  ++    +  L +M 
Sbjct: 225 CNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDME 284

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
            +G+  ++ TYN ++  Y R G +EEA++       R  E  ++TY  I++G   +G+  
Sbjct: 285 GKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYD 344

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
           RA++V   M+  G+ P+ ATYN ++  +C++D++  A  +F+EM  +G +P+  +++ +I
Sbjct: 345 RAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLI 404

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
             L   G + +AL     M+     P+   Y ILI  FC  G +   L++ ++M +  C 
Sbjct: 405 GVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCF 464

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
            ++ TYN  ++ +  +K   D   A  L  EMV+RG +P  +TF  ++ G    GN   A
Sbjct: 465 MDVVTYNTFLNGLCKKKMFAD---ADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKA 521

Query: 475 KEILRLQSRCGRLP 488
             +     R    P
Sbjct: 522 LNLFEAMVRTNLKP 535



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 175/375 (46%), Gaps = 4/375 (1%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           ++  Y     ++  M  L L P   T+  +            A +IF  M   G    L 
Sbjct: 339 KIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLV 398

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           SF++++ +L +   + +A   F+   R     D + Y ++ +G+C     + AL++  EM
Sbjct: 399 SFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEM 458

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           + RG   ++ TYN  L G  +     +A   F EM +R    D  T+TT++ G+   G +
Sbjct: 459 LARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNM 518

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
            +A N+F+ MV   + P   TYN +I   CK   +  A  ++++M+ K  +P+  +Y  V
Sbjct: 519 DKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTV 578

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           + G C +G +  AL    +M +    PN+ T N LI+ +C +G++ +  E   KM S   
Sbjct: 579 LNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGI 638

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGL 473
           +P+  +YN LI       K  +L  A  L+ EM  RG      T+N +LNG    G    
Sbjct: 639 IPDSFSYNTLIDGYL---KEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQE 695

Query: 474 AKEILRLQSRCGRLP 488
           A+++LR     G  P
Sbjct: 696 AEQVLRKMIEIGINP 710



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 170/371 (45%), Gaps = 40/371 (10%)

Query: 158 VKIFLS-MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIAN 215
           V  FLS M   G    + ++NT+++  C+E  VE+A+ L   F  +  +  +++YN I  
Sbjct: 276 VMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILY 335

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
           G C + + ++A +VL EM+  GL PN  TYN +L    R   I EA   F EM +R    
Sbjct: 336 GLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLP 395

Query: 276 DVVT-----------------------------------YTTIVHGFGVVGEIKRARNVF 300
           D+V+                                   YT ++ GF   G +  A  + 
Sbjct: 396 DLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMR 455

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           D M+  G    V TYN  +  LCKK    +A ++F EMV +G +P+  T+  +IRG C  
Sbjct: 456 DEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKD 515

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
           G M++AL     M     +P+  TYN LI  FC AGE+ R  EL++ M     +P+  +Y
Sbjct: 516 GNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISY 575

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
             +++       S  L  A  L  +M+++G  P   T N ++ G    G+   A E L  
Sbjct: 576 GTVLNGFC---SSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSK 632

Query: 481 QSRCGRLPRQF 491
               G +P  F
Sbjct: 633 MISNGIIPDSF 643



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 164/331 (49%), Gaps = 6/331 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   +F+ +       G   +A+  F  M   G       +  ++D  C+   +  A  +
Sbjct: 395 PDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKM 454

Query: 196 FK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
               + RG F  DV++YN   NG C  K    A  +  EMV+RG+ P+  T+  +++GY 
Sbjct: 455 RDEMLARGCF-MDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYC 513

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
           + G +++A   F  M +   + D VTY T++ GF   GE+ RA+ ++D M+   ++P   
Sbjct: 514 KDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHI 573

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           +Y  ++   C    +  A+ + ++M+ KG  PN  T N +I+G C +G+M +A E++ +M
Sbjct: 574 SYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKM 633

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
             +   P+  +YN LI  +     +E+   L  +M       N+ TYN++++      K 
Sbjct: 634 ISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKM 693

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
            +   A ++L +M++ G  P   T++ ++NG
Sbjct: 694 QE---AEQVLRKMIEIGINPDGATYSSLING 721



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 129/253 (50%), Gaps = 1/253 (0%)

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIAN 215
           A  +F  M E G      +F T++   CK+  ++KA NLF+   R   K D ++YN + +
Sbjct: 486 ADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLID 545

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
           G+C      +A E+  +M+ + + P+  +Y  VL G+  +G + EA     +M ++    
Sbjct: 546 GFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRP 605

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
           ++VT  T++ G+   G++ +A      M++ G++P   +YN +I    K+ ++E A ++ 
Sbjct: 606 NLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILI 665

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
            EM  +G   N  TYN+++ G C  G+M+ A + + +M +    P+  TY+ LI      
Sbjct: 666 NEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQ 725

Query: 396 GEIERGLELFEKM 408
             ++      ++M
Sbjct: 726 DNMKEAFRFHDEM 738



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 123/259 (47%), Gaps = 36/259 (13%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L + M    + P   TF  +   Y   G  D+A+ +F +M     +    ++NT++D  C
Sbjct: 489 LFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFC 548

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  ++ +A  L+  + R     D ISY  + NG+C      +AL +  +M+++G+ PNL 
Sbjct: 549 KAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLV 608

Query: 244 TYNIVLKGYFRAGQIEEAWRFFL-----------------------------------EM 268
           T N ++KGY R+G + +A+ +                                     EM
Sbjct: 609 TCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEM 668

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
           +KR  + +++TY  I++GF   G+++ A  V   M+  G+ P  ATY+++I     +D++
Sbjct: 669 EKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNM 728

Query: 329 ENAILVFEEMVGKGYMPNS 347
           + A    +EM+ +G +P+ 
Sbjct: 729 KEAFRFHDEMLQRGLVPDD 747


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 107/383 (27%), Positives = 185/383 (48%), Gaps = 13/383 (3%)

Query: 87  LHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAE 146
           L  + + S  PT+     S++  +D+       R    + + M S  + PT  TF ++ +
Sbjct: 158 LDMWGVYSCDPTF----KSYNVVLDILVDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMK 213

Query: 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKA 205
                 + D A  +   M +HGC  +   + T++  LC+  +V +A  L + +F    + 
Sbjct: 214 ALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEP 273

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           DV ++N + +G C   R ++A ++L  M+ RG + +  TY  ++ G  R GQ++EA    
Sbjct: 274 DVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALL 333

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN-VFDGMVNGGVLPSVATYNAMIQVLCK 324
            ++       + V Y T++ G+   G  + A++ +++ MV  G  P   T+N MI  L K
Sbjct: 334 NKIPNP----NTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVK 389

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
           K  + +A+ +  EMV K + PN  TY ++I G C  G +E A E V  M       N   
Sbjct: 390 KGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVG 449

Query: 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLI 444
           YN LI   C  G IE  L+LF +M    C P++ T+N LI+ +    K ++ L    L  
Sbjct: 450 YNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEAL---SLYH 506

Query: 445 EMVDRGFMPRKFTFNRVLNGLLL 467
           +M   G +    T+N +++  L+
Sbjct: 507 DMFLEGVIANTVTYNTLVHAFLM 529



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 111/365 (30%), Positives = 176/365 (48%), Gaps = 40/365 (10%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKI-FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN 194
           P    +  +   YV++G+ + A  + + +M   G      +FN ++D L K+  +  A  
Sbjct: 339 PNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALE 398

Query: 195 LFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
           L      K F+ +VI+Y ++ NG+C   R  +A E++  M  +GL+ N   YN ++    
Sbjct: 399 LLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALC 458

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDV-----------------------------------V 278
           + G IEEA + F EM  + C+ D+                                   V
Sbjct: 459 KDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTV 518

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TY T+VH F +   I++A  + D M+  G      TYN +I+ LCK  +VE  + +FEEM
Sbjct: 519 TYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEM 578

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
           +GKG  P   + N++I GLC TG++  AL+F+  M      P++ TYN LI   C  G +
Sbjct: 579 LGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHV 638

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           +    LF K+ S    P+  TYN LIS        +D   A  LL + VD GF+P + T+
Sbjct: 639 QEASNLFNKLQSEGIRPDAITYNTLISRHCHEGMFND---ACLLLYKGVDSGFIPNEVTW 695

Query: 459 NRVLN 463
           + ++N
Sbjct: 696 SILIN 700



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/414 (26%), Positives = 177/414 (42%), Gaps = 37/414 (8%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           ++  F        Y+H+  +    ID    + D++ +  L+ +MK   L   +  F +I 
Sbjct: 82  SMELFQRAGAQKGYSHTFDACYLLIDKLGAVGDFKVIEKLLKQMKDEGLLFKESLFILIM 141

Query: 146 ERYVSAGKADRAVKIFLSM-HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKF 203
           + Y  AG   +A ++ L M   + C  +  S+N +LD+L        A N+F  +     
Sbjct: 142 KHYGKAGLPGQATRLLLDMWGVYSCDPTFKSYNVVLDILVDGDCPRVAPNVFYDMLSRGV 201

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
              V ++ V+    C+V   + A  +L++M   G  PN   Y  ++       ++ EA +
Sbjct: 202 SPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQ 261

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
              +M    CE DV T+  ++HG    G I  A  + D M+  G      TY  ++  LC
Sbjct: 262 LLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLC 321

Query: 324 KKDSVENA--------------------------------ILVFEEMVGKGYMPNSTTYN 351
           +   V+ A                                 L++  MV  GY P++ T+N
Sbjct: 322 RMGQVDEARALLNKIPNPNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFN 381

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
           ++I GL   G +  ALE +  M     EPNV TY ILI  FC  G +E   E+   M + 
Sbjct: 382 IMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAK 441

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
               N   YN LI ++    K  ++  A +L  EM  +G  P  +TFN ++NGL
Sbjct: 442 GLSLNTVGYNCLICALC---KDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGL 492



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 144/329 (43%), Gaps = 36/329 (10%)

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           Y     +F+  ID   +     +   L++ M +    P   T+ I+   +   G+ + A 
Sbjct: 373 YEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAA 432

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGW 217
           +I  SM   G   +   +N ++  LCK+  +E+A  LF    GK  K D+ ++N + NG 
Sbjct: 433 EIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGL 492

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           C   +  +AL +  +M   G+  N  TYN ++  +     I++A++   EM  R C +D 
Sbjct: 493 CKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDN 552

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV------------------------- 312
           +TY  ++      G +++   +F+ M+  G+ P++                         
Sbjct: 553 ITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQD 612

Query: 313 ----------ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
                      TYN++I  LCK   V+ A  +F ++  +G  P++ TYN +I   CH G 
Sbjct: 613 MIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISRHCHEGM 672

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRY 391
              A   + +  D    PN  T++ILI Y
Sbjct: 673 FNDACLLLYKGVDSGFIPNEVTWSILINY 701



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 136/285 (47%), Gaps = 38/285 (13%)

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM-KKRKCEIDVVTYTTIVHG 286
           ++LK+M D GL    + + +++K Y +AG   +A R  L+M     C+    +Y  ++  
Sbjct: 120 KLLKQMKDEGLLFKESLFILIMKHYGKAGLPGQATRLLLDMWGVYSCDPTFKSYNVVLDI 179

Query: 287 FGVVGEIKR-ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
             V G+  R A NVF  M++ GV P+V T+  +++ LC    V++A  +  +M   G +P
Sbjct: 180 L-VDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVP 238

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           NS  Y  +I  LC    +  AL+ +  M    CEP+VQT+N +I   C AG I    +L 
Sbjct: 239 NSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLL 298

Query: 406 EKM---------------GSGVC--------------LPNLDT--YNILISSMFVRKKSD 434
           ++M                 G+C              +PN +T  YN LIS      + +
Sbjct: 299 DRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIPNPNTVLYNTLISGYVASGRFE 358

Query: 435 DLLVAGKLLI-EMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           +   A  LL   MV  G+ P  +TFN +++GL+  G    A E+L
Sbjct: 359 E---AKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELL 400



 Score = 41.6 bits (96), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 66/151 (43%), Gaps = 4/151 (2%)

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           KGY        ++I  L   G+ +   + + +MKD+        + ++++++  AG   +
Sbjct: 93  KGYSHTFDACYLLIDKLGAVGDFKVIEKLLKQMKDEGLLFKESLFILIMKHYGKAGLPGQ 152

Query: 401 GLELFEKM-GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
              L   M G   C P   +YN+++    +    D   VA  +  +M+ RG  P  +TF 
Sbjct: 153 ATRLLLDMWGVYSCDPTFKSYNVVLD---ILVDGDCPRVAPNVFYDMLSRGVSPTVYTFG 209

Query: 460 RVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
            V+  L ++     A  +LR  ++ G +P  
Sbjct: 210 VVMKALCMVSEVDSACSLLRDMAKHGCVPNS 240


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 111/365 (30%), Positives = 170/365 (46%), Gaps = 4/365 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           LV RMK     P  +T+  +       GK + A+ ++  M + G   +  ++N +++ LC
Sbjct: 367 LVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELC 426

Query: 185 KEKKVEKAYNLFKVFRGKFK-ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
              +   A  +F    G    A+  +YN I  G CL     KA+ + ++M+  G  P + 
Sbjct: 427 VGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVV 486

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN ++ GY   G +  A R    MK+  CE D  TY  +V GF   G+++ A   F  M
Sbjct: 487 TYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEM 546

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           V  G+ P+  +Y  +I    K   V+ A+ + E M   G  PN  +YN VI GL      
Sbjct: 547 VECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRF 606

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             A +   +M +    PNV TY  LI   C  G  +   ++F  M    CLPNL TY+ L
Sbjct: 607 SEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSL 666

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I  +    K+D+   A  LL EM  +G  P + TF  +++G +++G    A  +LR    
Sbjct: 667 IYGLCQEGKADE---AEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVD 723

Query: 484 CGRLP 488
            G  P
Sbjct: 724 VGCKP 728



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 178/371 (47%), Gaps = 12/371 (3%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
           +RL        L H+M    L P   T+  +       G+   A+KIF  M  HG   + 
Sbjct: 391 SRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANT 450

Query: 174 NSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
            ++N I+  LC    +EKA  LF K+ +      V++YN + NG+      N A  +L  
Sbjct: 451 QTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDL 510

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M + G  P+  TYN ++ G+ + G++E A  +F EM +     + V+YTT++ G    G+
Sbjct: 511 MKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGK 570

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           +  A ++ + M   G  P+V +YNA+I  L K++    A  + ++M  +G +PN  TY  
Sbjct: 571 VDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTT 630

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           +I GLC  G  + A +    M+  +C PN+ TY+ LI   C  G+ +    L ++M    
Sbjct: 631 LIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKG 690

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
             P+  T+  LI    V  + D   +   LL  MVD G  P   T++ +L        +G
Sbjct: 691 LAPDEVTFTSLIDGFVVLGRIDHAFL---LLRRMVDVGCKPNYRTYSVLL--------KG 739

Query: 473 LAKEILRLQSR 483
           L KE L L+ +
Sbjct: 740 LQKECLLLEEK 750



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 177/365 (48%), Gaps = 4/365 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L  +M +  + P+  TF  +       GK   A  I   + ++     + ++ +++   C
Sbjct: 227 LYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHC 286

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           + + ++ A+ +F ++ +     + ++Y+ + NG C   R ++AL++L+EM+++G+ P + 
Sbjct: 287 RNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVY 346

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY + +         EEA      MKKR C  +V TYT ++ G   +G+++ A  ++  M
Sbjct: 347 TYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKM 406

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           +  G++P+  TYNA+I  LC       A+ +F  M G G + N+ TYN +I+GLC  G++
Sbjct: 407 LKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDI 466

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           E+A+    +M      P V TYN LI  +   G +     L + M    C P+  TYN L
Sbjct: 467 EKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNEL 526

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           +S      K   L  A     EMV+ G  P   ++  +++G    G   +A  +L     
Sbjct: 527 VSGF---SKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEE 583

Query: 484 CGRLP 488
            G  P
Sbjct: 584 MGCNP 588



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 184/385 (47%), Gaps = 4/385 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  I++ ++    R    ++ ++    L P   T+  +   +      D A  +F  M
Sbjct: 242 TFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRM 301

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
            + GC  +  +++T+++ LC E +V++A ++  ++     +  V +Y +     C ++  
Sbjct: 302 VKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHE 361

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A+E++  M  RG  PN+ TY  ++ G  R G++E A   + +M K     + VTY  +
Sbjct: 362 EEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNAL 421

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++   V G    A  +F  M   G L +  TYN +I+ LC    +E A+++FE+M+  G 
Sbjct: 422 INELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGP 481

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
           +P   TYN +I G    G +  A   +  MK++ CEP+  TYN L+  F   G++E    
Sbjct: 482 LPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASF 541

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
            F++M      PN  +Y  LI       K D   +A  LL  M + G  P   ++N V+N
Sbjct: 542 YFQEMVECGLNPNPVSYTTLIDGHSKDGKVD---IALSLLERMEEMGCNPNVESYNAVIN 598

Query: 464 GLLLIGNQGLAKEILRLQSRCGRLP 488
           GL        A++I    +  G LP
Sbjct: 599 GLSKENRFSEAEKICDKMAEQGLLP 623



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 109/406 (26%), Positives = 183/406 (45%), Gaps = 19/406 (4%)

Query: 87  LHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAE 146
           + FF  +S  P Y H+ + F   ++   R R +                P      ++ +
Sbjct: 134 IQFFYWISKRPFYKHNMNCFISMLNRLVRDRVF---------------APADHIRILMIK 178

Query: 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKA 205
              +  +  R       +   G   SL S NT+L  L K + VE A NL+K +     + 
Sbjct: 179 ACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQP 238

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
            ++++N + N      +  +A  +L ++    L+P++ TY  ++ G+ R   ++ A+  F
Sbjct: 239 SLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVF 298

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
             M K  C+ + VTY+T+++G    G +  A ++ + M+  G+ P+V TY   I  LC  
Sbjct: 299 DRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAI 358

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
           +  E AI +   M  +G  PN  TY  +I GL   G++E A+    +M  +   PN  TY
Sbjct: 359 EHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTY 418

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           N LI   C  G     L++F  M     L N  TYN +I  + +     D+  A  L  +
Sbjct: 419 NALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCL---GGDIEKAMVLFEK 475

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           M+  G +P   T+N ++NG L  GN   A  +L L    G  P ++
Sbjct: 476 MLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEW 521



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 177/379 (46%), Gaps = 28/379 (7%)

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186
             M    L P   ++  + + +   GK D A+ +   M E GC  ++ S+N +++ L KE
Sbjct: 544 QEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKE 603

Query: 187 KKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
            +  +A  +  K+       +VI+Y  + +G C   RT  A ++  +M  R   PNL TY
Sbjct: 604 NRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTY 663

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           + ++ G  + G+ +EA     EM+++    D VT+T+++ GF V+G I  A  +   MV+
Sbjct: 664 SSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVD 723

Query: 306 GGVLPSVATYNAMIQVLCK-------KDSVEN-AILVFE--------EMVGK-------- 341
            G  P+  TY+ +++ L K       K +V++ A+  F         E+V          
Sbjct: 724 VGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEI 783

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
           G  P   TY+ ++ GLC  G    A + V  MK+    P+ + Y  L+   C   E++  
Sbjct: 784 GCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHA 843

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
           L++F  + +     +L  Y  LI ++    K+  +  A  L   M+++ +   +  +  +
Sbjct: 844 LKIFHSIEAKGFQLHLSIYRALICALC---KAGQVEEAQALFDNMLEKEWNADEIVWTVL 900

Query: 462 LNGLLLIGNQGLAKEILRL 480
           ++GLL  G   L  ++L +
Sbjct: 901 VDGLLKEGELDLCMKLLHI 919



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 152/344 (44%), Gaps = 25/344 (7%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S++  I+  ++   +     +  +M    L P   T+  + +     G+   A KIF  M
Sbjct: 592 SYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDM 651

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRT 223
            +  C  +L ++++++  LC+E K ++A  L K   R     D +++  + +G+ ++ R 
Sbjct: 652 EKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRI 711

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFR---------AGQIEEAWRF---------- 264
           + A  +L+ MVD G  PN  TY+++LKG  +         A Q E  + F          
Sbjct: 712 DHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFE 771

Query: 265 -----FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319
                   M +  CE  + TY+T+V G    G    A  +   M   G  P    Y +++
Sbjct: 772 IVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLL 831

Query: 320 QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
              CK   V++A+ +F  +  KG+  + + Y  +I  LC  G++E A      M + E  
Sbjct: 832 IAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWN 891

Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
            +   + +L+      GE++  ++L   M S    PN+ TY IL
Sbjct: 892 ADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVIL 935


>gi|413937640|gb|AFW72191.1| hypothetical protein ZEAMMB73_762171 [Zea mays]
          Length = 503

 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 123/412 (29%), Positives = 194/412 (47%), Gaps = 14/412 (3%)

Query: 61  HCPSLHWTPQLVDQIIKRLWNHALKALHFF-NILSYHPTYAHSPSSFDHAIDLAARLRDY 119
            C  +  T  + D +++   +    AL FF    S    Y+H+P +    +DL  + R  
Sbjct: 76  ECSEVRLTSGVADSLLRGCGDCWKPALGFFLWAQSRGGGYSHTPYACSRMVDLLGKTRQI 135

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
             +W L+  M    L  T  T A    R  +A K   A+ +F  + + G  ++  + N +
Sbjct: 136 DRMWDLLSEMHCRGL-VTVDTVAKSIRRLAAARKWRDAILLFDQLEDLGLERNTETMNVL 194

Query: 180 LDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
           LD LCKEKKVE A  +F +       D  ++N+  +GWC V+R ++AL  ++EM  RG  
Sbjct: 195 LDALCKEKKVELAREVFVMLSPHIAPDAYTFNIFVHGWCSVRRIDEALWTIEEMKTRGFP 254

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           P + TY  VL+ Y +       +     M  + C  +V+TYT I+         + A +V
Sbjct: 255 PIVITYTAVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIMTSLTKCERFEEALSV 314

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE-EMVGKGYMPNSTTYNVVIRGLC 358
            D M + G  P    YNA+I +L +   +  A  VF  EM   G + N  TYN +I  LC
Sbjct: 315 SDRMKSSGCKPDTLFYNALINLLGRAGHLFEANQVFRVEMPRNGVLRNVATYNTMISILC 374

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYN----ILIRYFCDAGEIERGL-ELFEKMGSGVC 413
             G  + AL  +  M+   C+P++QTY     +L+     A  + R L EL ++ G G+ 
Sbjct: 375 QYGRDDDALGVLKEMEAQSCKPDLQTYQPLLRLLLGRRGQAAAVHRLLSELRDRNGLGL- 433

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
             +LDTY +LI  +    ++D    A  L  EMV    +PR  T   +L+ +
Sbjct: 434 --DLDTYTLLIHGLCKVGETD---WAYLLYDEMVGSEIVPRPRTCELLLSEM 480



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 107/226 (47%), Gaps = 4/226 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   ++   + R++R V+ ++  M S    P   T+ +I        + + A+ +   M
Sbjct: 259 TYTAVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIMTSLTKCERFEEALSVSDRM 318

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKR 222
              GC+     +N +++LL +   + +A  +F+V   R     +V +YN + +  C   R
Sbjct: 319 KSSGCKPDTLFYNALINLLGRAGHLFEANQVFRVEMPRNGVLRNVATYNTMISILCQYGR 378

Query: 223 TNKALEVLKEMVDRGLNPNLTTYN-IVLKGYFRAGQIEEAWRFFLEMKKRK-CEIDVVTY 280
            + AL VLKEM  +   P+L TY  ++     R GQ     R   E++ R    +D+ TY
Sbjct: 379 DDDALGVLKEMEAQSCKPDLQTYQPLLRLLLGRRGQAAAVHRLLSELRDRNGLGLDLDTY 438

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           T ++HG   VGE   A  ++D MV   ++P   T   ++  + +++
Sbjct: 439 TLLIHGLCKVGETDWAYLLYDEMVGSEIVPRPRTCELLLSEMQRQN 484


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 160/309 (51%), Gaps = 3/309 (0%)

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG 216
           AV++F  M E G      ++  +++ LCK +K   A  L +  +G  K DV +Y +I + 
Sbjct: 96  AVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKGDVFTYGMIIDS 155

Query: 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID 276
            C    T +AL++  EM+  G+ P++  Y+ ++ G  R G+++EA  FF EM+ R    D
Sbjct: 156 LCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISAD 215

Query: 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE 336
           V TY +++HG    G  K      + MV+ G  P   T+  +I  LCK+  V  A  + E
Sbjct: 216 VYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILE 275

Query: 337 EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
            M  KG  P+  TYN ++ GLC  G++E A +    + D   + NV +YNILI  +C   
Sbjct: 276 LMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQ 335

Query: 397 EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
           +I+    LFE+M      P+  TYN LI ++    +S  +  A KL +EM   G   +  
Sbjct: 336 KIDEAFRLFEEMRPKGLKPSTVTYNTLIGALC---QSGRVRTAQKLFVEMQTCGQFLKLS 392

Query: 457 TFNRVLNGL 465
           T+  +L+GL
Sbjct: 393 TYCVLLDGL 401



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 166/300 (55%), Gaps = 5/300 (1%)

Query: 156 RAVKIFLS-MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVI 213
           + V  FL+ M + G      +F  ++D LCKE KV +A  + ++   K K  D+++YN +
Sbjct: 233 KEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTL 292

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
            NG CLV +   A ++ + + DRG+  N+ +YNI++ GY +  +I+EA+R F EM+ +  
Sbjct: 293 MNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGL 352

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
           +   VTY T++      G ++ A+ +F  M   G    ++TY  ++  LCK   +E AI 
Sbjct: 353 KPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAID 412

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           +F+ +    + PN   +++++ G+C  G++E A +    +  +  EP+   YNILI   C
Sbjct: 413 LFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLC 472

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
           + G +   ++L  +M    CLP+  T+N++I ++    K +++  A +LL EM +R F P
Sbjct: 473 NKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLL---KENEIHEAIQLLEEMRNRNFSP 529



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 111/433 (25%), Positives = 206/433 (47%), Gaps = 43/433 (9%)

Query: 72  VDQIIKRLW--NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRM 129
           V  ++K +W  N    A+  F+ ++    +  +  ++   I+   + R       L  +M
Sbjct: 80  VTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDA-KTYGILINGLCKARKTGLAIKLHEKM 138

Query: 130 KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV 189
           K    G    T+ +I +     G    A+ +F  M   G    +  +++++D LC+  ++
Sbjct: 139 KGNCKGDVF-TYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRL 197

Query: 190 EKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
           ++A   FK   G+   ADV +YN + +G        +    L  MVDRG +P+  T+ I+
Sbjct: 198 KEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTIL 257

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           + G  + G++ EA +    M  +  E D++TY T+++G  +VG+++ A  +F+ + + G+
Sbjct: 258 IDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGI 317

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN----------------- 351
             +V +YN +I   CK   ++ A  +FEEM  KG  P++ TYN                 
Sbjct: 318 KLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQK 377

Query: 352 ------------------VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
                             V++ GLC  G +E A++    +K  E +PN++ ++IL+   C
Sbjct: 378 LFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMC 437

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
            AG++E   + F+++      P+   YNILI+ +  +     L  A KLL +M ++G +P
Sbjct: 438 RAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGM---LSEAVKLLWQMEEKGCLP 494

Query: 454 RKFTFNRVLNGLL 466
              TFN ++  LL
Sbjct: 495 DSITFNVIIQNLL 507



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 168/327 (51%), Gaps = 6/327 (1%)

Query: 85  KALHFFNILSYHPTYA--HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           +AL FF  +      A  ++ +S  H +  A     ++ V   ++ M      P   TF 
Sbjct: 199 EALEFFKEMEGRGISADVYTYNSLIHGLSRAGL---WKEVTWFLNLMVDRGFSPDAFTFT 255

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK 202
           I+ +     GK   A +I   MH  G    + ++NT+++ LC   ++E A  LF+    +
Sbjct: 256 ILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADR 315

Query: 203 -FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
             K +V SYN++ NG+C  ++ ++A  + +EM  +GL P+  TYN ++    ++G++  A
Sbjct: 316 GIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTA 375

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
            + F+EM+     + + TY  ++ G    G ++ A ++F  +      P++  ++ ++  
Sbjct: 376 QKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDG 435

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           +C+   +E A   F+E+   G  P++  YN++I GLC+ G +  A++ + +M++  C P+
Sbjct: 436 MCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPD 495

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKM 408
             T+N++I+      EI   ++L E+M
Sbjct: 496 SITFNVIIQNLLKENEIHEAIQLLEEM 522



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 143/304 (47%), Gaps = 7/304 (2%)

Query: 186 EKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           E  +  A  LF     +G F  D  +Y ++ NG C  ++T  A++ L E +      ++ 
Sbjct: 90  ENGIPDAVQLFDEMTEKGLF-GDAKTYGILINGLCKARKTGLAIK-LHEKMKGNCKGDVF 147

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY +++    + G   EA   F EM       DVV Y++++ G    G +K A   F  M
Sbjct: 148 TYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEM 207

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G+   V TYN++I  L +    +        MV +G+ P++ T+ ++I GLC  G++
Sbjct: 208 EGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKV 267

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             A + +  M     EP++ TYN L+   C  G++E   +LFE +       N+ +YNIL
Sbjct: 268 GEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNIL 327

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I+     +K D+   A +L  EM  +G  P   T+N ++  L   G    A+++      
Sbjct: 328 INGYCKDQKIDE---AFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQT 384

Query: 484 CGRL 487
           CG+ 
Sbjct: 385 CGQF 388



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 130/262 (49%), Gaps = 4/262 (1%)

Query: 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262
           F+ D ++   +  G  +      A+++  EM ++GL  +  TY I++ G  +A +   A 
Sbjct: 73  FEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLAI 132

Query: 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322
           +   +MK   C+ DV TY  I+      G    A ++F  M+  G+LP V  Y++++  L
Sbjct: 133 KLHEKMKGN-CKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGL 191

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
           C+   ++ A+  F+EM G+G   +  TYN +I GL   G  +    F+  M D    P+ 
Sbjct: 192 CRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDA 251

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
            T+ ILI   C  G++    ++ E M      P++ TYN L++ + +  + +D   A KL
Sbjct: 252 FTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLED---ATKL 308

Query: 443 LIEMVDRGFMPRKFTFNRVLNG 464
              + DRG     F++N ++NG
Sbjct: 309 FESLADRGIKLNVFSYNILING 330



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 106/222 (47%), Gaps = 10/222 (4%)

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
           KR  E D VT TT+V G  +   I  A  +FD M   G+     TY  +I  LCK     
Sbjct: 70  KRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTG 129

Query: 330 NAILVFEEMVG--KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
            AI + E+M G  KG   +  TY ++I  LC  G    AL+    M      P+V  Y+ 
Sbjct: 130 LAIKLHEKMKGNCKG---DVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSS 186

Query: 388 LIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
           L+   C  G ++  LE F++M G G+   ++ TYN LI  +    ++         L  M
Sbjct: 187 LMDGLCRFGRLKEALEFFKEMEGRGIS-ADVYTYNSLIHGL---SRAGLWKEVTWFLNLM 242

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           VDRGF P  FTF  +++GL   G  G A++IL L    G+ P
Sbjct: 243 VDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEP 284



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 127/286 (44%), Gaps = 19/286 (6%)

Query: 52  DPRTLTQTLHCPSLHWTPQLVD--QIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHA 109
           +P  LT       L    QL D  ++ + L +  +K     N+ SY+     +    D  
Sbjct: 283 EPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIK----LNVFSYNILI--NGYCKDQK 336

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID A RL            M+   L P+  T+  +      +G+   A K+F+ M   G 
Sbjct: 337 IDEAFRL---------FEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQ 387

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALE 228
              L+++  +LD LCK   +E+A +LF+ + + + K ++  ++++ +G C   +  +A +
Sbjct: 388 FLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWK 447

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
              E+   GL P+   YNI++ G    G + EA +   +M+++ C  D +T+  I+    
Sbjct: 448 QFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLL 507

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
              EI  A  + + M N    P  A   +M+  L   D   +A LV
Sbjct: 508 KENEIHEAIQLLEEMRNRNFSPDEAV-TSMLLCLASFDPQWHAALV 552


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 185/361 (51%), Gaps = 6/361 (1%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           +  +W +   M S  L P+  TF  + +     G   RA ++F  M   G   ++  +  
Sbjct: 163 FELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTI 222

Query: 179 ILDLLCKEKKVEKAYNLFKVFR--GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
           ++  LC + K+E+A ++ +  R  G +  +V +YN + +G+C +    +AL + ++M+  
Sbjct: 223 LIRGLCSDNKIEEAESMHRAMREVGVY-PNVYTYNTLMDGYCKLANAKQALRLYQDMLGE 281

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           GL P++ T+ I++ G  + G+++ A   F+ M K     ++  Y +++  +  VG++  A
Sbjct: 282 GLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEA 341

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
             +F  +    V P V TY+ +I+ LC     E A  +FE+M  +G + NS TYN +I G
Sbjct: 342 MALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDG 401

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
            C  G+M++ALE   +M ++  EPNV T++ LI  +C    ++  + ++ +M      P+
Sbjct: 402 CCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPD 461

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKE 476
           + TY  +I       K   +  A KL  +M+D G  P  +T + +L+GL   G    A E
Sbjct: 462 VVTYTAMIDG---HCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALE 518

Query: 477 I 477
           +
Sbjct: 519 L 519



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 158/339 (46%), Gaps = 3/339 (0%)

Query: 102 SPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           SPS  +F   ID   R  D      +   M+   + PT   + I+     S  K + A  
Sbjct: 179 SPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAES 238

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWC 218
           +  +M E G   ++ ++NT++D  CK    ++A  L++   G+    DV+++ ++ +G C
Sbjct: 239 MHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLC 298

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
                  A  +   M+   + PN+  YN ++  Y + G + EA   FLE+++ +   DV 
Sbjct: 299 KFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVF 358

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TY+ ++ G   V   + A N+F+ M   G+L +  TYN++I   CK+  ++ A+ +  +M
Sbjct: 359 TYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQM 418

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
              G  PN  T++ +I G C    ++ A+     M      P+V TY  +I   C  G +
Sbjct: 419 TENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSM 478

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
           +  L+L+  M      PN  T + L+  +    K  D L
Sbjct: 479 KEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDAL 517



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 172/358 (48%), Gaps = 18/358 (5%)

Query: 126 VHR-MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           +HR M+ + + P   T+  + + Y     A +A++++  M   G    + +F  ++D LC
Sbjct: 239 MHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLC 298

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  +++ A NLF  + +     ++  YN + + +C V   ++A+ +  E+    ++P++ 
Sbjct: 299 KFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVF 358

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY+I+++G     + EEA   F +M K     + VTY +++ G    G++ +A  +   M
Sbjct: 359 TYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQM 418

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              GV P+V T++ +I   CK  +++ A+ ++ EMV K   P+  TY  +I G C  G M
Sbjct: 419 TENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSM 478

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF-EKM------------GS 410
           + AL+    M D+   PN  T + L+   C  G+I   LELF EK+            GS
Sbjct: 479 KEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALELFTEKIEFQTPRCNVDAGGS 538

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
              L N   Y  LI  +    +      A KL  +M   G  P +  +  +L GL  +
Sbjct: 539 KPSLTNHVAYTALIHGLC---QDGQFSKAVKLFSDMRRYGLQPDEVIYVVMLRGLFQV 593



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 144/301 (47%), Gaps = 17/301 (5%)

Query: 71  LVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMK 130
           L+D + K     A + L F N++ +  T   + + ++  ID   ++ D      L   ++
Sbjct: 293 LIDGLCKFGEMKAARNL-FVNMIKFSVT--PNIAVYNSLIDAYCKVGDVSEAMALFLELE 349

Query: 131 SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190
              + P   T++I+     S  + + A  IF  M + G   +  ++N+++D  CKE K++
Sbjct: 350 RFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMD 409

Query: 191 KAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL 249
           KA  +  ++     + +VI+++ + +G+C ++    A+ +  EMV + L+P++ TY  ++
Sbjct: 410 KALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMI 469

Query: 250 KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN---- 305
            G+ + G ++EA + + +M       +  T + ++ G    G+I  A  +F   +     
Sbjct: 470 DGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALELFTEKIEFQTP 529

Query: 306 ------GGVLPSV---ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
                 GG  PS+     Y A+I  LC+      A+ +F +M   G  P+   Y V++RG
Sbjct: 530 RCNVDAGGSKPSLTNHVAYTALIHGLCQDGQFSKAVKLFSDMRRYGLQPDEVIYVVMLRG 589

Query: 357 L 357
           L
Sbjct: 590 L 590



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 113/242 (46%), Gaps = 3/242 (1%)

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           N++L    + G+ E  WR + EM        V+T+ T++ G    G++ RA+ +FD M  
Sbjct: 151 NVLLYVLVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRV 210

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G++P+V  Y  +I+ LC  + +E A  +   M   G  PN  TYN ++ G C     ++
Sbjct: 211 KGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQ 270

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           AL     M  +   P+V T+ ILI   C  GE++    LF  M      PN+  YN LI 
Sbjct: 271 ALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLID 330

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
           +     K  D+  A  L +E+      P  FT++ ++ GL  +     A  I    ++ G
Sbjct: 331 AYC---KVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEG 387

Query: 486 RL 487
            L
Sbjct: 388 IL 389



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 77/168 (45%), Gaps = 14/168 (8%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F   ID   ++R+ +    +   M   SL P   T+  + + +   G    A+K++  M
Sbjct: 429 TFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDM 488

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-----------KVFRGKFKADV---ISY 210
            ++G   +  + + +LD LCK+ K+  A  LF            V  G  K  +   ++Y
Sbjct: 489 LDNGITPNCYTISCLLDGLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKPSLTNHVAY 548

Query: 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
             + +G C   + +KA+++  +M   GL P+   Y ++L+G F+   I
Sbjct: 549 TALIHGLCQDGQFSKAVKLFSDMRRYGLQPDEVIYVVMLRGLFQVKYI 596


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 174/357 (48%), Gaps = 6/357 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++  M      P    + +I E    +G    +V++  +MH  GC     + N +L+ +C
Sbjct: 133 VLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAIC 192

Query: 185 KEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           ++  V++A  L +   F G  +AD++SYN +  G C+ KR     E++ EMV     PN+
Sbjct: 193 EQGCVDEAVGLLRKLAFFG-CEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNI 251

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            T+N ++    R G  E       +M +  C  D+  Y TI+ G    G ++ A  + + 
Sbjct: 252 VTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNR 311

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M + G+ P+V  YN +++ LC  +  + A  +  EM  K    +  T+N+++   C  G 
Sbjct: 312 MPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGL 371

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           ++R +E + +M    C P+V TY  +I  FC  G I+  + L + M S  C PN  +Y I
Sbjct: 372 VDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTI 431

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           ++  +    +  D   A +L+ +M+ +G  P   TFN ++N L   G    A E+L+
Sbjct: 432 VLKGLCSAGRWVD---AEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLK 485



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 108/386 (27%), Positives = 177/386 (45%), Gaps = 52/386 (13%)

Query: 84  LKALHFF----NILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQK 139
           L+ L FF    +I+SY+             + +A R  D   V  L+  M  +   P   
Sbjct: 204 LRKLAFFGCEADIVSYNAVL--------KGLCMAKRWGD---VEELMDEMVRVDCAPNIV 252

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           TF  +       G  +R  ++   M EHGC   +  + TI+D +CKE  +E         
Sbjct: 253 TFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLE--------- 303

Query: 200 RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
                        +AN            E+L  M   GL PN+  YN VLKG   A + +
Sbjct: 304 -------------VAN------------EILNRMPSYGLKPNVVCYNTVLKGLCSAERWK 338

Query: 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319
           EA     EM ++ C +D VT+  +V  F   G + R   + + M++ G +P V TY  +I
Sbjct: 339 EAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVI 398

Query: 320 QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
              CK+  ++ A+++ + M   G  PN+ +Y +V++GLC  G    A E + +M    C 
Sbjct: 399 NGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCP 458

Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA 439
           PN  T+N LI + C  G +E+ +EL ++M    C P+L +Y+ +I  +    K+++ L  
Sbjct: 459 PNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEAL-- 516

Query: 440 GKLLIEMVDRGFMPRKFTFNRVLNGL 465
            +LL  MV++G  P    ++ +   L
Sbjct: 517 -ELLNVMVNKGISPNTIIYSSIACAL 541



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 187/384 (48%), Gaps = 8/384 (2%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  I    R   +  V  ++ +M      P  + +A I +     G  + A +I   M
Sbjct: 253 TFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRM 312

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
             +G + ++  +NT+L  LC  ++ ++A  L  ++F+     D +++N++ + +C     
Sbjct: 313 PSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLV 372

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           ++ +E+L++M+  G  P++ TY  V+ G+ + G I+EA      M    C+ + V+YT +
Sbjct: 373 DRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIV 432

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G    G    A  +   M+  G  P+  T+N +I  LCKK  VE AI + ++M+  G 
Sbjct: 433 LKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGC 492

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+  +Y+ VI GL   G+ E ALE +  M +    PN   Y+ +       G + + ++
Sbjct: 493 SPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQ 552

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           +F+ +       +   YN +ISS+  R ++D    A      MV  G MP + T+  ++ 
Sbjct: 553 MFDNIKDTTIRSDAVLYNAVISSLCKRWETDR---AIDFFAYMVSNGCMPNESTYTMLIK 609

Query: 464 GLLLIGNQGLAKEILRLQSR-CGR 486
           GL    ++GLAKE   L S  C R
Sbjct: 610 GL---ASEGLAKEAQELLSELCSR 630



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 128/308 (41%), Gaps = 32/308 (10%)

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           +  G C   R   ALEVL EM  +G  P    Y+++L+   R+G    + R    M  + 
Sbjct: 117 VVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG 176

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
           C +D      +++     G +  A  +   +   G    + +YNA+++ LC      +  
Sbjct: 177 CTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVE 236

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
            + +EMV     PN  T+N +I  LC  G  ER  E + +M +  C P+++ Y  +I   
Sbjct: 237 ELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGI 296

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNI----------------LISSMFVRKKSDD- 435
           C  G +E   E+  +M S    PN+  YN                 L+S MF +    D 
Sbjct: 297 CKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDD 356

Query: 436 ----LLV-----------AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
               +LV             +LL +M+  G MP   T+  V+NG    G    A  +L+ 
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 416

Query: 481 QSRCGRLP 488
            S CG  P
Sbjct: 417 MSSCGCKP 424



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 111/221 (50%), Gaps = 1/221 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M S    P   ++ I+ +   SAG+   A ++   M + GC  +  +FNT+++ LC
Sbjct: 413 LLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLC 472

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K+  VE+A  L K +       D+ISY+ + +G     +T +ALE+L  MV++G++PN  
Sbjct: 473 KKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTI 532

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            Y+ +     R G++ +  + F  +K      D V Y  ++       E  RA + F  M
Sbjct: 533 IYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYM 592

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
           V+ G +P+ +TY  +I+ L  +   + A  +  E+  +G +
Sbjct: 593 VSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRGAL 633


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 168/323 (52%), Gaps = 12/323 (3%)

Query: 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISY 210
           G+ DRA+   L + E  C   + +F  +++ LC+EK++++A+++  +  R   + D ++Y
Sbjct: 23  GQLDRAM---LLLDEMPCSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTY 79

Query: 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
           NV  +G C  +R + A ++LK+M ++   P   TY  ++ G  +AG+++EA     +M +
Sbjct: 80  NVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVE 139

Query: 271 RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
           +     + TYT ++ G    G ++ AR +F  M+  G  P    Y A+I  L K   ++ 
Sbjct: 140 KGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDE 199

Query: 331 AILVFEEMV----GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
           A++   +MV     +G  P+   +N+VIR LC +G +E AL +   + DD  +    T+N
Sbjct: 200 ALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYFDEL-DDSLDLTHFTFN 258

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            L+   C A   E  +   +KM    C P L TY  L+       + D+ L+    L E 
Sbjct: 259 PLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQ---LKEA 315

Query: 447 VDRGFMPRKFTFNRVLNGLLLIG 469
           V+RGF+P   T+  +++GL  +G
Sbjct: 316 VERGFIPDAVTYTSIIDGLCKLG 338



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 104/354 (29%), Positives = 174/354 (49%), Gaps = 7/354 (1%)

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
           SL  T  TF  +      A + + A+     M E  C  +L ++ +++D   K  ++++A
Sbjct: 249 SLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEA 308

Query: 193 YNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250
               K  V RG F  D ++Y  I +G C + R  +  E   EM +RG  P+  TY  ++ 
Sbjct: 309 LLQLKEAVERG-FIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALID 367

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
           G+ +A  I +A R + +M +    +  VTY  I+ G    G +  A   F  M   G + 
Sbjct: 368 GFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVA 427

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           +V TY+A++   C + +V  A+ +F  M+ +G  PN  +YN++IRGLC  G++ +A  + 
Sbjct: 428 TVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYF 487

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGE-IERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
            ++      P+V T+N  +   C   + +  G+ELFE M S    PNL +Y+IL+  +  
Sbjct: 488 EKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSYSILMDGIC- 546

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
             ++  L V  ++  EMV RG  P    FN ++  L + G    A E+ R   R
Sbjct: 547 --RAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELER 598



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 186/382 (48%), Gaps = 8/382 (2%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           AL +F+ L       H   +F+  +    +          V +M      PT  T+  + 
Sbjct: 239 ALAYFDELDDSLDLTHF--TFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLV 296

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FK 204
           + ++  G+ D A+       E G      ++ +I+D LCK  +VE+    F   R + ++
Sbjct: 297 DGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYE 356

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
            D ++Y  + +G+   K   KA  V ++M+  G   +  TYNI+L G  +AG++ EA+  
Sbjct: 357 PDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYAT 416

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
           FL M++R C   VVTY+ ++ GF   G +  A  +F  M++ G  P++ +YN +I+ LC+
Sbjct: 417 FLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCR 476

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE-MERALEFVGRMKDDECEPNVQ 383
              +  A   FE+++ +   P+  T+N  + GLC   + +   +E    M      PN+ 
Sbjct: 477 AGKLAKAYFYFEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLH 536

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
           +Y+IL+   C AG +E  LE+F +M S    P++  +N LI  + +  + D+ L   + L
Sbjct: 537 SYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFREL 596

Query: 444 IEMVDRGFMPRKFTFNRVLNGL 465
               +R   P  +++  +L+ L
Sbjct: 597 ----ERRSAPDAWSYWSLLDAL 614



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/381 (26%), Positives = 167/381 (43%), Gaps = 42/381 (11%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS----------- 172
            ++ +M      PT KT+ ++ +    AG+ + A +IF+ M  +GCR             
Sbjct: 132 AILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGL 191

Query: 173 ------------LNSF----------------NTILDLLCKEKKVEKAYNLFKVFRGKFK 204
                       LN                  N ++  LC    +E A   F        
Sbjct: 192 AKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYFDELDDSLD 251

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
               ++N +    C  +RT +A+  +K+M +R   P L TY  ++ G+ + G+++EA   
Sbjct: 252 LTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQ 311

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
             E  +R    D VTYT+I+ G   +G ++     F  M N G  P   TY A+I    K
Sbjct: 312 LKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMK 371

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
              +  A  V+ +M+  G + ++ TYN+++ GLC  G +  A      M++  C   V T
Sbjct: 372 AKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVT 431

Query: 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLI 444
           Y+ L+  FC  G +   +ELF +M    C PNL +YNI+I  +    ++  L  A     
Sbjct: 432 YSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLC---RAGKLAKAYFYFE 488

Query: 445 EMVDRGFMPRKFTFNRVLNGL 465
           +++ R   P  +TFN  L+GL
Sbjct: 489 KLLQRRLCPDVYTFNSFLHGL 509



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 169/344 (49%), Gaps = 11/344 (3%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           +  +   P    F ++        + D A  +       GC     ++N  +D LCK ++
Sbjct: 32  LDEMPCSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAER 91

Query: 189 VEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           V+ A+ L K     K     ++Y  + +G     R ++A+ +L++MV++G +P L TY +
Sbjct: 92  VDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTV 151

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV-NG 306
           V+ G  +AG++EEA R F++M    C  D   YT ++ G   +G++  A    + MV NG
Sbjct: 152 VIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENG 211

Query: 307 ---GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              GV P V  +N +I+ LC   ++E+A+  F+E+     + +  T+N ++  LC     
Sbjct: 212 CARGVEPDVVIHNLVIRQLCASGNLEDALAYFDELDDSLDLTH-FTFNPLVAALCKAERT 270

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG-LELFEKMGSGVCLPNLDTYNI 422
           E A+ FV +M +  C P + TY  L+  F   G ++   L+L E +  G  +P+  TY  
Sbjct: 271 EEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGF-IPDAVTYTS 329

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
           +I  +    + ++     +   EM +RG+ P   T+  +++G +
Sbjct: 330 IIDGLCKLGRVEE---GCERFHEMRNRGYEPDAVTYAALIDGFM 370



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 6/163 (3%)

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
            A++  LCK   ++ A+L+ +EM      P+   + VVI GLC    ++ A   + R   
Sbjct: 13  TALLNGLCKTGQLDRAMLLLDEMPCS---PDMVAFTVVINGLCREKRLDEAFSVLERAVR 69

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
             CEP+  TYN+ I   C A  ++   +L +KM    CLP   TY  L+  +    + D+
Sbjct: 70  AGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDE 129

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
              A  +L +MV++G  P   T+  V++GL   G    A+ I 
Sbjct: 130 ---AMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIF 169



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 88/198 (44%), Gaps = 38/198 (19%)

Query: 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF 196
           T  T++ + + + S G    AV++F  M + GC  +L S+N I+  LC+  K+ KAY  F
Sbjct: 428 TVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYF 487

Query: 197 -KVFRGKFKADVI------------------------------------SYNVIANGWCL 219
            K+ + +   DV                                     SY+++ +G C 
Sbjct: 488 EKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSYSILMDGICR 547

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
                  LE+  EMV RG+ P++  +N +++    AG+++EA   F E+++R    D  +
Sbjct: 548 AGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERRSAP-DAWS 606

Query: 280 YTTIVHGFGVVGEIKRAR 297
           Y +++        ++ AR
Sbjct: 607 YWSLLDALSRCERMEEAR 624


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 174/357 (48%), Gaps = 6/357 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++  M      P    + +I E    +G    +V++  +MH  GC     + N +L+ +C
Sbjct: 133 VLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAIC 192

Query: 185 KEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           ++  V++A  L +   F G  +AD++SYN +  G C+ KR     E++ EMV     PN+
Sbjct: 193 EQGCVDEAVGLLRKLAFFG-CEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNI 251

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            T+N ++    R G  E       +M +  C  D+  Y TI+ G    G ++ A  + + 
Sbjct: 252 VTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNR 311

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M + G+ P+V  YN +++ LC  +  + A  +  EM  K    +  T+N+++   C  G 
Sbjct: 312 MPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGL 371

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           ++R +E + +M    C P+V TY  +I  FC  G I+  + L + M S  C PN  +Y I
Sbjct: 372 VDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTI 431

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           ++  +    +  D   A +L+ +M+ +G  P   TFN ++N L   G    A E+L+
Sbjct: 432 VLKGLCSAGRWVD---AEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLK 485



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 108/386 (27%), Positives = 177/386 (45%), Gaps = 52/386 (13%)

Query: 84  LKALHFF----NILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQK 139
           L+ L FF    +I+SY+             + +A R  D   V  L+  M  +   P   
Sbjct: 204 LRKLAFFGCEADIVSYNAVL--------KGLCMAKRWGD---VEELMDEMVRVDCAPNIV 252

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           TF  +       G  +R  ++   M EHGC   +  + TI+D +CKE  +E         
Sbjct: 253 TFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLE--------- 303

Query: 200 RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
                        +AN            E+L  M   GL PN+  YN VLKG   A + +
Sbjct: 304 -------------VAN------------EILNRMPSYGLKPNVVCYNTVLKGLCSAERWK 338

Query: 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319
           EA     EM ++ C +D VT+  +V  F   G + R   + + M++ G +P V TY  +I
Sbjct: 339 EAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVI 398

Query: 320 QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
              CK+  ++ A+++ + M   G  PN+ +Y +V++GLC  G    A E + +M    C 
Sbjct: 399 NGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCP 458

Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA 439
           PN  T+N LI + C  G +E+ +EL ++M    C P+L +Y+ +I  +    K+++ L  
Sbjct: 459 PNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEAL-- 516

Query: 440 GKLLIEMVDRGFMPRKFTFNRVLNGL 465
            +LL  MV++G  P    ++ +   L
Sbjct: 517 -ELLNVMVNKGISPNTIIYSSIACAL 541



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 187/384 (48%), Gaps = 8/384 (2%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  I    R   +  V  ++ +M      P  + +A I +     G  + A +I   M
Sbjct: 253 TFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRM 312

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
             +G + ++  +NT+L  LC  ++ ++A  L  ++F+     D +++N++ + +C     
Sbjct: 313 PSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLV 372

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           ++ +E+L++M+  G  P++ TY  V+ G+ + G I+EA      M    C+ + V+YT +
Sbjct: 373 DRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIV 432

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G    G    A  +   M+  G  P+  T+N +I  LCKK  VE AI + ++M+  G 
Sbjct: 433 LKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGC 492

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+  +Y+ VI GL   G+ E ALE +  M +    PN   Y+ +       G + + ++
Sbjct: 493 SPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQ 552

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           +F+ +       +   YN +ISS+  R ++D    A      MV  G MP + T+  ++ 
Sbjct: 553 MFDNIKDTTIRSDAVLYNAVISSLCKRWETDR---AIDFFAYMVSNGCMPNESTYTMLIK 609

Query: 464 GLLLIGNQGLAKEILRLQSR-CGR 486
           GL    ++GLAKE   L S  C R
Sbjct: 610 GL---ASEGLAKEAQELLSELCSR 630



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 128/308 (41%), Gaps = 32/308 (10%)

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           +  G C   R   ALEVL EM  +G  P    Y+++L+   R+G    + R    M  + 
Sbjct: 117 VVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG 176

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
           C +D      +++     G +  A  +   +   G    + +YNA+++ LC      +  
Sbjct: 177 CTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVE 236

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
            + +EMV     PN  T+N +I  LC  G  ER  E + +M +  C P+++ Y  +I   
Sbjct: 237 ELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGI 296

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNI----------------LISSMFVRKKSDD- 435
           C  G +E   E+  +M S    PN+  YN                 L+S MF +    D 
Sbjct: 297 CKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDD 356

Query: 436 ----LLV-----------AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
               +LV             +LL +M+  G MP   T+  V+NG    G    A  +L+ 
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 416

Query: 481 QSRCGRLP 488
            S CG  P
Sbjct: 417 MSSCGCKP 424



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 111/221 (50%), Gaps = 1/221 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M S    P   ++ I+ +   SAG+   A ++   M + GC  +  +FNT+++ LC
Sbjct: 413 LLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLC 472

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K+  VE+A  L K +       D+ISY+ + +G     +T +ALE+L  MV++G++PN  
Sbjct: 473 KKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTI 532

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            Y+ +     R G++ +  + F  +K      D V Y  ++       E  RA + F  M
Sbjct: 533 IYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYM 592

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
           V+ G +P+ +TY  +I+ L  +   + A  +  E+  +G +
Sbjct: 593 VSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRGAL 633


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 174/357 (48%), Gaps = 6/357 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++  M      P    + +I E    +G    +V++  +MH  GC     + N +L+ +C
Sbjct: 133 VLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAIC 192

Query: 185 KEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           ++  V++A  L +   F G  +AD++SYN +  G C+ KR     E++ EMV     PN+
Sbjct: 193 EQGCVDEAVGLLRKLAFFG-CEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNI 251

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            T+N ++    R G  E       +M +  C  D+  Y TI+ G    G ++ A  + + 
Sbjct: 252 VTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNR 311

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M + G+ P+V  YN +++ LC  +  + A  +  EM  K    +  T+N+++   C  G 
Sbjct: 312 MPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGL 371

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           ++R +E + +M    C P+V TY  +I  FC  G I+  + L + M S  C PN  +Y I
Sbjct: 372 VDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTI 431

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           ++  +    +  D   A +L+ +M+ +G  P   TFN ++N L   G    A E+L+
Sbjct: 432 VLKGLCSAGRWVD---AEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLK 485



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 108/386 (27%), Positives = 177/386 (45%), Gaps = 52/386 (13%)

Query: 84  LKALHFF----NILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQK 139
           L+ L FF    +I+SY+             + +A R  D   V  L+  M  +   P   
Sbjct: 204 LRKLAFFGCEADIVSYNAVL--------KGLCMAKRWGD---VEELMDEMVRVDCAPNIV 252

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           TF  +       G  +R  ++   M EHGC   +  + TI+D +CKE  +E         
Sbjct: 253 TFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLE--------- 303

Query: 200 RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
                        +AN            E+L  M   GL PN+  YN VLKG   A + +
Sbjct: 304 -------------VAN------------EILNRMPSYGLKPNVVCYNTVLKGLCSAERWK 338

Query: 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319
           EA     EM ++ C +D VT+  +V  F   G + R   + + M++ G +P V TY  +I
Sbjct: 339 EAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVI 398

Query: 320 QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
              CK+  ++ A+++ + M   G  PN+ +Y +V++GLC  G    A E + +M    C 
Sbjct: 399 NGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCP 458

Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA 439
           PN  T+N LI + C  G +E+ +EL ++M    C P+L +Y+ +I  +    K+++ L  
Sbjct: 459 PNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEAL-- 516

Query: 440 GKLLIEMVDRGFMPRKFTFNRVLNGL 465
            +LL  MV++G  P    ++ +   L
Sbjct: 517 -ELLNVMVNKGISPNTIIYSSIACAL 541



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 187/384 (48%), Gaps = 8/384 (2%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  I    R   +  V  ++ +M      P  + +A I +     G  + A +I   M
Sbjct: 253 TFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRM 312

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
             +G + ++  +NT+L  LC  ++ ++A  L  ++F+     D +++N++ + +C     
Sbjct: 313 PSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLV 372

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           ++ +E+L++M+  G  P++ TY  V+ G+ + G I+EA      M    C+ + V+YT +
Sbjct: 373 DRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIV 432

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G    G    A  +   M+  G  P+  T+N +I  LCKK  VE AI + ++M+  G 
Sbjct: 433 LKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGC 492

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+  +Y+ VI GL   G+ E ALE +  M +    PN   Y+ +       G + + ++
Sbjct: 493 SPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQ 552

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           +F+ +       +   YN +ISS+  R ++D    A      MV  G MP + T+  ++ 
Sbjct: 553 MFDNIKDTTIRSDAVLYNAVISSLCKRWETDR---AIDFFAYMVSNGCMPNESTYTMLIK 609

Query: 464 GLLLIGNQGLAKEILRLQSR-CGR 486
           GL    ++GLAKE   L S  C R
Sbjct: 610 GL---ASEGLAKEAQELLSELCSR 630



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 128/308 (41%), Gaps = 32/308 (10%)

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           +  G C   R   ALEVL EM  +G  P    Y+++L+   R+G    + R    M  + 
Sbjct: 117 VVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG 176

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
           C +D      +++     G +  A  +   +   G    + +YNA+++ LC      +  
Sbjct: 177 CTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVE 236

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
            + +EMV     PN  T+N +I  LC  G  ER  E + +M +  C P+++ Y  +I   
Sbjct: 237 ELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGI 296

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNI----------------LISSMFVRKKSDD- 435
           C  G +E   E+  +M S    PN+  YN                 L+S MF +    D 
Sbjct: 297 CKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDD 356

Query: 436 ----LLV-----------AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
               +LV             +LL +M+  G MP   T+  V+NG    G    A  +L+ 
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 416

Query: 481 QSRCGRLP 488
            S CG  P
Sbjct: 417 MSSCGCKP 424



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 111/221 (50%), Gaps = 1/221 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M S    P   ++ I+ +   SAG+   A ++   M + GC  +  +FNT+++ LC
Sbjct: 413 LLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLC 472

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K+  VE+A  L K +       D+ISY+ + +G     +T +ALE+L  MV++G++PN  
Sbjct: 473 KKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTI 532

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            Y+ +     R G++ +  + F  +K      D V Y  ++       E  RA + F  M
Sbjct: 533 IYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYM 592

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
           V+ G +P+ +TY  +I+ L  +   + A  +  E+  +G +
Sbjct: 593 VSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRGAL 633


>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
          Length = 584

 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 181/376 (48%), Gaps = 20/376 (5%)

Query: 104 SSFDHAIDL--AARLRDYRTVWTLVHRMKS-----------LSLGPTQKTFAIIAERYVS 150
              D A+ L  +AR  D  T   L+ ++ +            + GP    +  +   Y  
Sbjct: 81  GELDEALRLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNAMMAGYCG 140

Query: 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVIS 209
           AG+ D A +      E    +   + +T++  LC   +   A  +  ++ R +   DV++
Sbjct: 141 AGQVDAARRW---CAERAVERDAYTCDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVT 197

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           Y ++    C      +A+++L EM D+G  P++ TYN+V+ G  + G++++A  F   + 
Sbjct: 198 YTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLP 257

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
              CE + V+Y  ++ G       + A  +   M   G  P+V T+N +I  LC+K  VE
Sbjct: 258 SYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVE 317

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
            A+ V E++   G  PNS +YN ++   C   +M++A+ F+  M    C P++ +YN L+
Sbjct: 318 PALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLL 377

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
              C +GE++  +EL  ++    C P L +YN +I  +    K+ + L   +LL EMV +
Sbjct: 378 TALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEAL---ELLNEMVSK 434

Query: 450 GFMPRKFTFNRVLNGL 465
           G  P   T++ +  GL
Sbjct: 435 GLQPDIITYSTIAAGL 450



 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 161/316 (50%), Gaps = 6/316 (1%)

Query: 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISY 210
           G+   A+ +   M    C   + ++  +L+  CK    ++A  L    R K    D+++Y
Sbjct: 174 GRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTY 233

Query: 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
           NV+ NG C   R + A+E LK +   G  PN  +YNIVLKG   A + E+A     EM +
Sbjct: 234 NVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQ 293

Query: 271 RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
           + C  +VVT+  ++      G ++ A  V + +   G  P+  +YN ++   CK+  ++ 
Sbjct: 294 KGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDK 353

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           A+   + MV +G  P+  +YN ++  LC +GE++ A+E + ++KD  C P + +YN +I 
Sbjct: 354 AMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVID 413

Query: 391 YFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA-GKLLIEMVDR 449
               AG+ +  LEL  +M S    P++ TY+ + + +    + +D + A GK+     D 
Sbjct: 414 GLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKV----QDM 469

Query: 450 GFMPRKFTFNRVLNGL 465
           G  P    +N ++ GL
Sbjct: 470 GIRPNTVLYNAIILGL 485



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 155/323 (47%), Gaps = 4/323 (1%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           Y+    L+  M+     P   T+ ++       G+ D A++   ++  +GC  +  S+N 
Sbjct: 211 YKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNI 270

Query: 179 ILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           +L  LC  ++ E A  L      K    +V+++N++ +  C       ALEVL+++   G
Sbjct: 271 VLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYG 330

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
            +PN  +YN +L  + +  ++++A  F   M  R C  D+V+Y T++      GE+  A 
Sbjct: 331 CSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAV 390

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
            +   + + G  P + +YN +I  L K    + A+ +  EMV KG  P+  TY+ +  GL
Sbjct: 391 ELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGL 450

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
           C    +E A+   G+++D    PN   YN +I   C   E    ++LF  M    C+PN 
Sbjct: 451 CREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNE 510

Query: 418 DTYNILISSMFVR---KKSDDLL 437
            TY ILI  +      K++ DLL
Sbjct: 511 STYTILIEGLAYEGLIKEARDLL 533



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 173/343 (50%), Gaps = 10/343 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T A + ++  ++G+   A ++  +     C   + ++N ++   C   +V+ A   
Sbjct: 96  PDAGTCAALIKKLSASGRTAEARRVLAA-----CGPDVMAYNAMMAGYCGAGQVDAARRW 150

Query: 196 FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
                   + D  + + +  G C   RT  AL VL EM+ R   P++ TY I+L+   + 
Sbjct: 151 --CAERAVERDAYTCDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKR 208

Query: 256 GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
              ++A +   EM+ + C  D+VTY  +V+G    G +  A      + + G  P+  +Y
Sbjct: 209 SGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSY 268

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           N +++ LC  +  E+A  +  EM  KG  PN  T+N++I  LC  G +E ALE + ++  
Sbjct: 269 NIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPK 328

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
             C PN  +YN L+  FC   ++++ +   + M S  C P++ +YN L++++    +S +
Sbjct: 329 YGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALC---RSGE 385

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           + VA +LL ++ D+G  P   ++N V++GL   G    A E+L
Sbjct: 386 VDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELL 428



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 149/283 (52%), Gaps = 1/283 (0%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           + S    P   ++ I+ +   +A + + A ++   M + GC  ++ +FN ++  LC++  
Sbjct: 256 LPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGL 315

Query: 189 VEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           VE A  +  ++ +     + +SYN + + +C  K+ +KA+  L  MV RG  P++ +YN 
Sbjct: 316 VEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNT 375

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           +L    R+G+++ A     ++K + C   +++Y T++ G    G+ K A  + + MV+ G
Sbjct: 376 LLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKG 435

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           + P + TY+ +   LC++D +E+AI  F ++   G  PN+  YN +I GLC   E   A+
Sbjct: 436 LQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAI 495

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           +    M  + C PN  TY ILI      G I+   +L +++ S
Sbjct: 496 DLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCS 538



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 115/239 (48%), Gaps = 1/239 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  I    R         ++ ++      P   ++  +   +    K D+A+     M
Sbjct: 302 TFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLM 361

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADV-ISYNVIANGWCLVKRT 223
              GC   + S+NT+L  LC+  +V+ A  L    + K  A V ISYN + +G     +T
Sbjct: 362 VSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKT 421

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +ALE+L EMV +GL P++ TY+ +  G  R  +IE+A R F +++      + V Y  I
Sbjct: 422 KEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAI 481

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           + G     E   A ++F  M+  G +P+ +TY  +I+ L  +  ++ A  + +E+  +G
Sbjct: 482 ILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRG 540



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 127/274 (46%), Gaps = 13/274 (4%)

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
           LV+R    L+    +V     P+  T   ++K    +G+  EA R         C  DV+
Sbjct: 77  LVRRGE--LDEALRLVGSARRPDAGTCAALIKKLSASGRTAEARRVLA-----ACGPDVM 129

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
            Y  ++ G+   G++  AR          V     T + +I+ LC +    NA+ V +EM
Sbjct: 130 AYNAMMAGYCGAGQVDAARRW---CAERAVERDAYTCDTLIRGLCGRGRTANALAVLDEM 186

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
           + +  +P+  TY +++   C     ++A++ +  M+D  C P++ TYN+++   C  G +
Sbjct: 187 LRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRV 246

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           +  +E  + + S  C PN  +YNI++  +   ++ +D   A +L+ EM  +G  P   TF
Sbjct: 247 DDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWED---AEELMGEMGQKGCPPNVVTF 303

Query: 459 NRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQFK 492
           N +++ L   G    A E+L    + G  P    
Sbjct: 304 NMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLS 337



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 90/192 (46%), Gaps = 2/192 (1%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII 144
           KA+ F +++     Y     S++  +    R  +      L+H++K     P   ++  +
Sbjct: 353 KAMAFLDLMVSRGCYPDI-VSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTV 411

Query: 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKF 203
            +    AGK   A+++   M   G +  + +++TI   LC+E ++E A   F KV     
Sbjct: 412 IDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGI 471

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
           + + + YN I  G C  + T+ A+++   M+  G  PN +TY I+++G    G I+EA  
Sbjct: 472 RPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARD 531

Query: 264 FFLEMKKRKCEI 275
              E+  R  EI
Sbjct: 532 LLDELCSRGEEI 543


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 134/481 (27%), Positives = 223/481 (46%), Gaps = 36/481 (7%)

Query: 25  LTTTSPAPLPPAAADPAALASLILT-----STDPRTLTQT-------LHCPSLHWTPQLV 72
           L   + AP   A     ALA  +       +  PR L+ T       + C +    P+L 
Sbjct: 73  LAALARAPSSAACGSGPALAVALFNRAASRAQGPRVLSPTSYTYAILMDCCTRAHRPELA 132

Query: 73  DQIIKRLWNHALKALHFFNILSYHPTYAHSPSS-FDHAIDLAARLRDYRTVWTLVHRMKS 131
                +L    L+      I++ H       +   D A+D+            L+HR   
Sbjct: 133 LAFFGQLLRTGLRV---DAIIASHLLKGFCEAKRTDEALDI------------LLHRTPE 177

Query: 132 LSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG--CRQSLNSFNTILDLLCKEKKV 189
           L   P   ++ I+ +   + GK+ +A  +   M E G  C   + ++NT++D   KE  V
Sbjct: 178 LGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDV 237

Query: 190 EKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
            KA +LFK  V RG    D+++Y+ + +  C  +  +KA   L++MV++G+ P+  TYN 
Sbjct: 238 NKACDLFKEMVQRG-IPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNN 296

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ GY   GQ +EA R F EM+++    DVV   T++      G+IK AR+VFD M   G
Sbjct: 297 LIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKG 356

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
             P V +Y  M+     K  + +   +F+ M+G G  P   T+NV+I+   + G +++A+
Sbjct: 357 QNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAM 416

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
                M+D   +P+V TY  +I   C  G+++  +E F +M     +P+   Y+ LI   
Sbjct: 417 IIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQG- 475

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
           F    S  LL A +L+ E+++ G       F  ++N L  +G    A+ I  L    G  
Sbjct: 476 FCTHGS--LLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLH 533

Query: 488 P 488
           P
Sbjct: 534 P 534



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 181/400 (45%), Gaps = 44/400 (11%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           SS  HA+    + R        + +M +  + P   T+  +   Y S G+   AV++F  
Sbjct: 260 SSVVHAL---CKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKE 316

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFK-ADVISYNVIANGW----C 218
           M        + + NT++  LCK  K+++A ++F     K +  DV SY ++ NG+    C
Sbjct: 317 MRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGC 376

Query: 219 LVKRTN-------------------------------KALEVLKEMVDRGLNPNLTTYNI 247
           LV  T+                               KA+ +  EM D G+ P++ TY  
Sbjct: 377 LVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMT 436

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           V+    R G++++A   F +M  +    D   Y  ++ GF   G + +A+ +   ++N G
Sbjct: 437 VIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNG 496

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           +   +  + ++I  LCK   V +A  +F+  V  G  P++  YN+++ G C  G+ME+AL
Sbjct: 497 MRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKAL 556

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
                M     EPNV  Y  L+  +C  G I+ GL LF +M      P+   YNI+I  +
Sbjct: 557 RVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 616

Query: 428 FVRKKSDDLLVAGKLLI-EMVDRGFMPRKFTFNRVLNGLL 466
           F   ++    V  K+   EM + G    K T++ VL GL 
Sbjct: 617 FEAGRT----VPAKVKFHEMTESGIAMNKCTYSIVLRGLF 652



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 94/397 (23%), Positives = 179/397 (45%), Gaps = 8/397 (2%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII 144
           KA+  FN +  H    H   ++   I    R+          ++M    + P +  +  +
Sbjct: 414 KAMIIFNEMRDHGVKPHV-VTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCL 472

Query: 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV-FRGKF 203
            + + + G   +A ++   +  +G R  +  F +I++ LCK  +V  A N+F +      
Sbjct: 473 IQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGL 532

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
             D + YN++ +G+CLV +  KAL V   MV  G+ PN+  Y  ++ GY + G+I+E   
Sbjct: 533 HPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLS 592

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
            F EM ++  +   + Y  I+ G    G    A+  F  M   G+  +  TY+ +++ L 
Sbjct: 593 LFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLF 652

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
           K    + AI +F+E+       +  T N +I G+  T  +E A +    +      P   
Sbjct: 653 KNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAV 712

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
           TY+I+I      G +E   ++F  M +  C P+    N ++  +    K ++++ AG  L
Sbjct: 713 TYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELL---KKNEIVRAGAYL 769

Query: 444 IEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
            ++ +R F     T   +++   L  ++G  +E +R 
Sbjct: 770 SKIDERNFSLEHLTAMLLVD---LFSSKGTCREQIRF 803



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 93/396 (23%), Positives = 166/396 (41%), Gaps = 49/396 (12%)

Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHR------MKSLSLGPTQKTFAIIAERYVSAGK 153
             +P  F + I     L  Y T   LV        M    + P   TF ++ + Y + G 
Sbjct: 356 GQNPDVFSYTI----MLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGM 411

Query: 154 ADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVI 213
            D+A+ IF  M +HG                                   K  V++Y  +
Sbjct: 412 LDKAMIIFNEMRDHG----------------------------------VKPHVVTYMTV 437

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
               C + + + A+E   +M+D+G+ P+   Y+ +++G+   G + +A     E+     
Sbjct: 438 IAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGM 497

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
            +D+V + +I++    +G +  A+N+FD  VN G+ P    YN ++   C    +E A+ 
Sbjct: 498 RLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALR 557

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           VF+ MV  G  PN   Y  ++ G C  G ++  L     M     +P+   YNI+I    
Sbjct: 558 VFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLF 617

Query: 394 DAGE-IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
           +AG  +   ++  E   SG+ + N  TY+I++  +F  +  D+ +    L  E+      
Sbjct: 618 EAGRTVPAKVKFHEMTESGIAM-NKCTYSIVLRGLFKNRCFDEAIF---LFKELRAMNVK 673

Query: 453 PRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
               T N ++ G+        AK++    SR G +P
Sbjct: 674 IDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVP 709


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 177/382 (46%), Gaps = 4/382 (1%)

Query: 84   LKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAI 143
            +K  H   +L     Y     S+   ++   R  +   VW L+  MK   L P    +  
Sbjct: 705  IKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGS 764

Query: 144  IAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK- 202
            I        K   A + F  M   G       + T++D  CK   +  A   F     + 
Sbjct: 765  IIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRD 824

Query: 203  FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262
               DV++Y  I +G+C +    +A ++  EM  +GL P+  T+  ++ GY +AG +++A+
Sbjct: 825  ITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAF 884

Query: 263  RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322
            R    M +  C  +VVTYTT++ G    G++  A  +   M   G+ P++ TYN+++  L
Sbjct: 885  RVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGL 944

Query: 323  CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
            CK  ++E A+ +  E    G   ++ TY  ++   C +GEM++A E +  M     +P +
Sbjct: 945  CKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTI 1004

Query: 383  QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
             T+N+L+  FC  G +E G +L   M +    PN  T+N L+    +R   ++L  A  +
Sbjct: 1005 VTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIR---NNLKAATAI 1061

Query: 443  LIEMVDRGFMPRKFTFNRVLNG 464
              +M  RG  P   T+  ++ G
Sbjct: 1062 YKDMCSRGVGPDGKTYENLVKG 1083



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 186/384 (48%), Gaps = 6/384 (1%)

Query: 104  SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
            +S++  I    +L   +    L+  M+     P   +++ +   Y   G+ D+  K+   
Sbjct: 690  ASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEV 749

Query: 164  MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKR 222
            M   G + +   + +I+ LLC+  K+ +A   F ++ R     D + Y  + +G+C    
Sbjct: 750  MKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGD 809

Query: 223  TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
               A +   EM  R + P++ TY  ++ G+ + G + EA + F EM  +  E D VT+T 
Sbjct: 810  IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTE 869

Query: 283  IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
            +++G+   G +K A  V + M+  G  P+V TY  +I  LCK+  +++A  +  EM   G
Sbjct: 870  LINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 929

Query: 343  YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
              PN  TYN ++ GLC +G +E A++ VG  +      +  TY  L+  +C +GE+++  
Sbjct: 930  LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 989

Query: 403  ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
            E+ ++M      P + T+N+L++   +    +D     KLL  M+ +G  P   TFN ++
Sbjct: 990  EILKEMLGKGLQPTIVTFNVLMNGFCLHGMLED---GEKLLNWMLAKGIAPNATTFNSLV 1046

Query: 463  NGLLLIGNQGLAKEILRLQSRCGR 486
                +  N   A  I +    C R
Sbjct: 1047 KQYCIRNNLKAATAIYK--DMCSR 1068



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 158/338 (46%), Gaps = 5/338 (1%)

Query: 135 GPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE-KKVEKAY 193
           G   + F +  +  V  G    A ++F  M  +G   S++S N  L  L K+  K   A 
Sbjct: 615 GSDPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAI 674

Query: 194 NLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
            +F+ F       +V SYN++ +  C + R  +A  +L  M  +G  P++ +Y+ V+ GY
Sbjct: 675 IVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGY 734

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
            R G++++ W+    MK++  + +   Y +I+     + ++  A   F  M+  G+LP  
Sbjct: 735 CRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDT 794

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
             Y  +I   CK+  +  A   F EM  +   P+  TY  +I G C  G+M  A +    
Sbjct: 795 VVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHE 854

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           M     EP+  T+  LI  +C AG ++    +   M    C PN+ TY  LI  +    K
Sbjct: 855 MFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLC---K 911

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
             DL  A +LL EM   G  P  FT+N ++NGL   GN
Sbjct: 912 EGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN 949



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 165/352 (46%), Gaps = 6/352 (1%)

Query: 110  IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
            ID   +  D R      + M S  + P   T+  I   +   G    A K+F  M   G 
Sbjct: 801  IDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGL 860

Query: 170  RQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALE 228
                 +F  +++  CK   ++ A+ +   + +     +V++Y  + +G C     + A E
Sbjct: 861  EPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANE 920

Query: 229  VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
            +L EM   GL PN+ TYN ++ G  ++G IEEA +   E +      D VTYTT++  + 
Sbjct: 921  LLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYC 980

Query: 289  VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
              GE+ +A+ +   M+  G+ P++ T+N ++   C    +E+   +   M+ KG  PN+T
Sbjct: 981  KSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNAT 1040

Query: 349  TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            T+N +++  C    ++ A      M      P+ +TY  L++  C A  ++    LF++M
Sbjct: 1041 TFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEM 1100

Query: 409  -GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
             G G  + ++ TY++LI     RKK    L A ++  +M   G    K  F+
Sbjct: 1101 KGKGFSV-SVSTYSVLIKGFLKRKK---FLEAREVFDQMRREGLAADKEIFD 1148



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 163/322 (50%), Gaps = 1/322 (0%)

Query: 125  LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
            L H M    L P   TF  +   Y  AG    A ++   M + GC  ++ ++ T++D LC
Sbjct: 851  LFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLC 910

Query: 185  KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            KE  ++ A  L  ++++   + ++ +YN I NG C      +A++++ E    GLN +  
Sbjct: 911  KEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTV 970

Query: 244  TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            TY  ++  Y ++G++++A     EM  +  +  +VT+  +++GF + G ++    + + M
Sbjct: 971  TYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWM 1030

Query: 304  VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            +  G+ P+  T+N++++  C +++++ A  ++++M  +G  P+  TY  +++G C    M
Sbjct: 1031 LAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNM 1090

Query: 364  ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
            + A      MK      +V TY++LI+ F    +     E+F++M       + + ++  
Sbjct: 1091 KEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFF 1150

Query: 424  ISSMFVRKKSDDLLVAGKLLIE 445
              + +  K+ D ++     +IE
Sbjct: 1151 SDTKYKGKRPDTIVDPIDEIIE 1172


>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Brachypodium distachyon]
          Length = 787

 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 113/384 (29%), Positives = 189/384 (49%), Gaps = 14/384 (3%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSL-SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG 168
           +D A RL+D          M+ L +L P   T+  +A+       +  A+++   M E G
Sbjct: 325 VDEAFRLKD---------EMERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKG 375

Query: 169 CRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNKAL 227
            + +L + N ++  LCK+ ++E A   L K+       DVI+YN + +  C      KA 
Sbjct: 376 VKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAY 435

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
            ++ EMV RGL  +  T N VL    +  + EEA        +R    D V+Y T++  +
Sbjct: 436 TLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAY 495

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
                 + A  ++D M+   + PS++TYN +I+ L +   ++ AI    E++ KG +P+ 
Sbjct: 496 FKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDD 555

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
           TTYN++I   C  G++E A +F  +M ++  +P+V T N L+   C  G++++ L+LFE 
Sbjct: 556 TTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFES 615

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467
                   ++ TYN LI +M    K  D+  A     +M  RG  P  FT+N VL+ L  
Sbjct: 616 WVEKGKKVDVITYNTLIQTMC---KDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSE 672

Query: 468 IGNQGLAKEILRLQSRCGRLPRQF 491
            G    A+ +L   +  G L + F
Sbjct: 673 AGRTEEAQNMLHKLAESGTLSQSF 696



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 166/334 (49%), Gaps = 4/334 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M+   +  T  T  I+ +     G+ + A+     M + G    + ++NT++   C
Sbjct: 367 LLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHC 426

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K   + KAY L  ++ R   K D  + N +    C  KR  +A  +L+    RG  P+  
Sbjct: 427 KAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEV 486

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           +Y  V+  YF+    E A R + EM ++K    + TY T++ G   +G +K A +  + +
Sbjct: 487 SYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNEL 546

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           +  G++P   TYN +I   CK+  +ENA     +MV   + P+  T N ++ GLC  G++
Sbjct: 547 MEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKL 606

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           ++AL+      +   + +V TYN LI+  C  G+++  L  F  M +    P+  TYN++
Sbjct: 607 DKALKLFESWVEKGKKVDVITYNTLIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVV 666

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           +S++    ++++   A  +L ++ + G + + F+
Sbjct: 667 LSALSEAGRTEE---AQNMLHKLAESGTLSQSFS 697



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/364 (28%), Positives = 171/364 (46%), Gaps = 14/364 (3%)

Query: 107 DHAIDLAARLRDYRTVWTLVHRMKS-LSLGPT-QKTFAIIAERYVSAGKADRA-VKIFLS 163
           D A+   +RLR       L+H ++  + + P+ Q   A+++    S   + +A +  F S
Sbjct: 135 DAALSAYSRLRLPHLAAQLLHSLRRRVRVRPSLQAANAVLSALARSPSTSPQASLDAFRS 194

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKR 222
           +       +  +FN ++   C +  +  A +     +G     D ++YN + N  C    
Sbjct: 195 IVALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGM 254

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
             +A  +L  M   G+ P   TYN ++  Y R G I++A +    M     E D+ TY  
Sbjct: 255 LGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNV 314

Query: 283 IVHGFGVVGEIKRARNVFDGMVN-GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
           +  G    G++  A  + D M   G +LP V TYN +     K     +A+ + EEM  K
Sbjct: 315 LAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREK 374

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
           G      T+N+VI+GLC  GE+E AL  + +M DD   P+V TYN LI   C AG I + 
Sbjct: 375 GVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKA 434

Query: 402 LELFEKM-GSGVCLPNLDTY--NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
             L ++M   G+    LDT+  N ++ ++   K+ ++   A  LL     RGFMP + ++
Sbjct: 435 YTLMDEMVRRGL---KLDTFTLNTVLYNLCKEKRYEE---AQGLLQSPPQRGFMPDEVSY 488

Query: 459 NRVL 462
             V+
Sbjct: 489 GTVM 492



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/378 (23%), Positives = 159/378 (42%), Gaps = 71/378 (18%)

Query: 126 VHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185
           +++M    L P   T+  +   +  AG   +A  +   M   G +    + NT+L  LCK
Sbjct: 403 LNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCK 462

Query: 186 EKKVEKAYNLFK------------------------------------VFRGKFKADVIS 209
           EK+ E+A  L +                                    +   K    + +
Sbjct: 463 EKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSIST 522

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           YN +  G   + R  +A++ L E++++GL P+ TTYNI++  Y + G +E A++F  +M 
Sbjct: 523 YNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMV 582

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
           +   + DVVT  T+++G  + G++ +A  +F+  V  G    V TYN +IQ +CK   V+
Sbjct: 583 ENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMCKDGDVD 642

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD-------------- 375
            A+  F +M  +G  P++ TYNVV+  L   G  E A   + ++ +              
Sbjct: 643 TALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESGTLSQSFSSPLLK 702

Query: 376 ----DECEPN-----------------VQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
               DE E                    + Y  L+   C +G+ +    + ++M      
Sbjct: 703 PSSVDEAESGKDAKTEEETVENPQDSASEAYTKLVNGLCTSGQFKEAKAILDEMMQKGMS 762

Query: 415 PNLDTYNILISSMFVRKK 432
            +  TY  L+  +  R+K
Sbjct: 763 VDSSTYITLMEGLVKRQK 780



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 130/301 (43%), Gaps = 39/301 (12%)

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
           +L+  + +V   L+PN  T+N+++  +   G + +A      M+      D VTY T+++
Sbjct: 188 SLDAFRSIVALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLN 247

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
                G +  AR +   M   GV P+  TYN ++    +   ++ A  V E M   G+ P
Sbjct: 248 AHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEP 307

Query: 346 NSTTYNVVIRGLCHTG----------EMER--------------------------ALEF 369
           +  TYNV+  GLC  G          EMER                          AL  
Sbjct: 308 DLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSDALRL 367

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
           +  M++   +  + T+NI+I+  C  GE+E  L    KM      P++ TYN LI +   
Sbjct: 368 LEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHA--- 424

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPR 489
             K+ ++  A  L+ EMV RG     FT N VL  L        A+ +L+   + G +P 
Sbjct: 425 HCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPD 484

Query: 490 Q 490
           +
Sbjct: 485 E 485



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 129/307 (42%), Gaps = 13/307 (4%)

Query: 92  ILSYHPTYAHSPSSFDHAIDLAARLRDYRT--VWTLVHRMKSLSLGPTQKTFAIIAERYV 149
           +L   P     P    +   +AA  ++Y +     L   M    L P+  T+  + +   
Sbjct: 472 LLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLS 531

Query: 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVI 208
             G+   A+     + E G      ++N I+   CKE  +E A+    K+    FK DV+
Sbjct: 532 RMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVV 591

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           + N + NG CL  + +KAL++ +  V++G   ++ TYN +++   + G ++ A  FF +M
Sbjct: 592 TCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMCKDGDVDTALHFFADM 651

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
           + R  + D  TY  ++      G  + A+N+   +   G L       +    L K  SV
Sbjct: 652 EARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESGTL-----SQSFSSPLLKPSSV 706

Query: 329 ENA-----ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
           + A         EE V       S  Y  ++ GLC +G+ + A   +  M       +  
Sbjct: 707 DEAESGKDAKTEEETVENPQDSASEAYTKLVNGLCTSGQFKEAKAILDEMMQKGMSVDSS 766

Query: 384 TYNILIR 390
           TY  L+ 
Sbjct: 767 TYITLME 773



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 94/218 (43%), Gaps = 19/218 (8%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177
           D    +   ++M   S  P   T   +       GK D+A+K+F S  E G +  + ++N
Sbjct: 570 DLENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYN 629

Query: 178 TILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
           T++  +CK+  V+ A + F     +  + D  +YNV+ +      RT +A  +L ++ + 
Sbjct: 630 TLIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAES 689

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV---------TYTTIVHGF 287
           G     T          +   ++EA       K  K E + V          YT +V+G 
Sbjct: 690 G-----TLSQSFSSPLLKPSSVDEAE----SGKDAKTEEETVENPQDSASEAYTKLVNGL 740

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
              G+ K A+ + D M+  G+    +TY  +++ L K+
Sbjct: 741 CTSGQFKEAKAILDEMMQKGMSVDSSTYITLMEGLVKR 778



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 80/186 (43%), Gaps = 16/186 (8%)

Query: 308 VLPSVATYNAMIQVLCKKDSV--ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
           V PS+   NA++  L +  S   + ++  F  +V     PN  T+N+++   C  G +  
Sbjct: 163 VRPSLQAANAVLSALARSPSTSPQASLDAFRSIVALRLHPNHYTFNLLVHTHCSKGTLAD 222

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           AL  +  M+     P+  TYN L+   C  G +     L  +M      P   TYN L+S
Sbjct: 223 ALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVS 282

Query: 426 SM----FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481
           +     ++++       A K++  M   GF P  +T+N +  GL   G      E  RL+
Sbjct: 283 AYARLGWIKQ-------ATKVVEAMTANGFEPDLWTYNVLAAGLCQAGK---VDEAFRLK 332

Query: 482 SRCGRL 487
               RL
Sbjct: 333 DEMERL 338


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 175/349 (50%), Gaps = 4/349 (1%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           T+  +   +  AG  +RA ++   M E G    + + ++I+  LC    + +A   F+  
Sbjct: 107 TYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRE- 165

Query: 200 RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
             +   D + +N++ +G C   + ++A ++++EM +RG+ P++ TYN ++ G  ++ ++E
Sbjct: 166 SVECAPDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRME 225

Query: 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319
           EA +    M KRK   ++VTY T+++G+   G    A  + + M+  G  P V T+N++I
Sbjct: 226 EARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLI 285

Query: 320 QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
              C+K  ++ A  V   M      PN  TYNV+I GLC  G    A E +  M      
Sbjct: 286 SGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGIL 345

Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA 439
           P++ TYN LI  FC   +IE+  ++   M     +P+  +Y  L  ++   ++ D+   A
Sbjct: 346 PDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDE---A 402

Query: 440 GKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             LL  M D G +P  FTFN ++ GL        A+ +L +  R G  P
Sbjct: 403 FALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDP 451



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 180/386 (46%), Gaps = 4/386 (1%)

Query: 90  FNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149
           F +L+      HSP    H+  + A          + +  +S+   P    F I+     
Sbjct: 125 FQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRESVECAPDSVLFNILVHGLC 184

Query: 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVI 208
            A +   A ++   M E G    + ++N+++D LCK  ++E+A  L +   + K + +++
Sbjct: 185 KANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLV 244

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           +YN +  G+C    T  A ++++ M+  G +P++ T+N ++ G+ +  +I++A      M
Sbjct: 245 TYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLM 304

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
           KK  C  ++VTY  ++ G    G    A  +   M   G+LP + TYN++I + C+   +
Sbjct: 305 KKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQI 364

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           E A  +   MV +G +P+  +Y  +   L  +   + A   +  M D    PN+ T+N L
Sbjct: 365 EQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSL 424

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           +   C +  ++    L   M    C P   TY +L++ +    + DD   A ++L+ MV 
Sbjct: 425 MEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDD---AKEVLVMMVS 481

Query: 449 RGFMPRKFTFNRVLNGLLLIGNQGLA 474
            G  P   +   +++ L   G Q LA
Sbjct: 482 EGIQPLVSSSGTIVHTLAREGKQDLA 507



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 159/326 (48%), Gaps = 45/326 (13%)

Query: 177 NTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVK------RTNKALEVL 230
           NT+  +L   K V+ +   F+      + + I  N   N  CL++      R ++A ++ 
Sbjct: 35  NTVGRVLQVIKDVDVSLFFFRWVTRSHRGESIHNNFTCN--CLLRTLVKARRHHQAYQIF 92

Query: 231 K-EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI------ 283
           + E++ +  + N  TYN ++ G+ +AG +E A++   EMK+R    DVVT+++I      
Sbjct: 93  RDELLGQHCDTNHITYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCN 152

Query: 284 ---------------------------VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
                                      VHG     ++  AR + + M   G++P V TYN
Sbjct: 153 TGNLSRAMQYFRESVECAPDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYN 212

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
           ++I  LCK   +E A  + E MV +   PN  TYN +I G C TG    A + + RM   
Sbjct: 213 SLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQS 272

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
              P+V T+N LI  FC   +I++  E+   M  G+C PNL TYN+LIS +    ++++ 
Sbjct: 273 GTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANE- 331

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVL 462
             A +LL EM  RG +P   T+N ++
Sbjct: 332 --ACELLSEMDGRGILPDIITYNSLI 355



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 152/316 (48%), Gaps = 4/316 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   +         L+  M    + P   T+  +   Y   G    A ++   M
Sbjct: 210 TYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERM 269

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRT 223
            + G    + +FN+++   C++ K++KA  +  + + G    ++++YNV+ +G C   R 
Sbjct: 270 IQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRA 329

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           N+A E+L EM  RG+ P++ TYN ++  + R  QIE+A++    M +R    D ++Y T+
Sbjct: 330 NEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTL 389

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
                       A  + D M + G +P++ T+N++++ LC    ++ A  +   M   G 
Sbjct: 390 AVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGC 449

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P ++TY V++ GLC  G ++ A E +  M  +  +P V +   ++      G+ +  L 
Sbjct: 450 DPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTIVHTLAREGKQDLALH 509

Query: 404 LFEKM---GSGVCLPN 416
            F+++    S  C P+
Sbjct: 510 YFDQVVAAESKACDPS 525



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 121/241 (50%), Gaps = 6/241 (2%)

Query: 244 TYNIVLKGYFRAGQIEEAWRFFL-EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
           T N +L+   +A +  +A++ F  E+  + C+ + +TY T++ GF   G+++RA  +   
Sbjct: 71  TCNCLLRTLVKARRHHQAYQIFRDELLGQHCDTNHITYNTLIGGFCKAGDMERAFQLLAE 130

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M   G  P V T+++++Q LC   ++  A+  F E V     P+S  +N+++ GLC   +
Sbjct: 131 MKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRESVECA--PDSVLFNILVHGLCKANQ 188

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           +  A + +  M +    P+V TYN LI   C +  +E   +L E M      PNL TYN 
Sbjct: 189 LSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNT 248

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           LI   +   K+    +A +L+  M+  G  P   TFN +++G         A E+L L  
Sbjct: 249 LI---YGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMK 305

Query: 483 R 483
           +
Sbjct: 306 K 306


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 177/357 (49%), Gaps = 13/357 (3%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID A R+ D         RM+S    P   T+ I+     S GK D A+K+   +    C
Sbjct: 174 IDDATRVLD---------RMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNC 224

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
           + ++ ++  +++    E  V++A  L  ++     K D+ +YN I  G C     ++A E
Sbjct: 225 QPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFE 284

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           +++ +  +G  P++ +YNI+L+     G+ EE  +   +M   KC+ +VVTY+ ++    
Sbjct: 285 MVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLC 344

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G+I+ A N+   M   G+ P   +Y+ +I   C++  ++ AI   E M+  G +P+  
Sbjct: 345 RDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIV 404

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            YN V+  LC  G+ ++ALE  G++ +  C PN  +YN +      +G+  R L +  +M
Sbjct: 405 NYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEM 464

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            S    P+  TYN +IS +      D+   A +LL++M    F P   T+N VL G 
Sbjct: 465 MSNGIDPDEITYNSMISCLCREGMVDE---AFELLVDMRSCEFHPSVVTYNIVLLGF 518



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 172/338 (50%), Gaps = 4/338 (1%)

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKAD 206
           +    + D A ++   M          ++N ++  LC   K++ A  +  ++     +  
Sbjct: 168 FCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPT 227

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           VI+Y ++     L    ++AL+++ EM+ RGL P++ TYN +++G  + G ++ A+    
Sbjct: 228 VITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVR 287

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
            ++ + CE DV++Y  ++      G+ +    +   M +    P+V TY+ +I  LC+  
Sbjct: 288 NLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDG 347

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            +E A+ + + M  KG  P++ +Y+ +I   C  G ++ A+EF+  M  D C P++  YN
Sbjct: 348 KIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYN 407

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            ++   C  G+ ++ LE+F K+G   C PN  +YN + S+++    S D + A  +++EM
Sbjct: 408 TVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALW---SSGDKIRALHMILEM 464

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484
           +  G  P + T+N +++ L   G    A E+L     C
Sbjct: 465 MSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSC 502



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 167/356 (46%), Gaps = 37/356 (10%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           +++++ S +  PT  T+ I+ E  +  G  D A+K+   M   G +  + ++NTI+  +C
Sbjct: 215 VLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMC 274

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           KE  V++A+ + +    K  + DVISYN++        +  +  +++ +M     +PN+ 
Sbjct: 275 KEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVV 334

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY+I++    R G+IEEA      MK++    D  +Y  ++  F   G +  A    + M
Sbjct: 335 TYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETM 394

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFE--------------------------- 336
           ++ G LP +  YN ++  LCK    + A+ +F                            
Sbjct: 395 ISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDK 454

Query: 337 --------EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
                   EM+  G  P+  TYN +I  LC  G ++ A E +  M+  E  P+V TYNI+
Sbjct: 455 IRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIV 514

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM-FVRKKSDDLLVAGKLL 443
           +  FC A  IE  + + E M    C PN  TY +LI  + F   +++ + +A  L+
Sbjct: 515 LLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLV 570



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 173/355 (48%), Gaps = 17/355 (4%)

Query: 131 SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG-------CRQSLNSFNTILDLL 183
           S SLG        I  R   +G    ++ +  +M   G       C + +  F T+    
Sbjct: 82  SQSLGFRDTQMLKIFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTL---- 137

Query: 184 CKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
              + + KA  + ++     + DV +YN + NG+C + R + A  VL  M  +  +P+  
Sbjct: 138 ---RNIPKAVRVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTV 194

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYNI++      G+++ A +   ++    C+  V+TYT ++    + G +  A  + D M
Sbjct: 195 TYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEM 254

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           ++ G+ P + TYN +I+ +CK+  V+ A  +   +  KG  P+  +YN+++R L + G+ 
Sbjct: 255 LSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKW 314

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           E   + + +M  ++C+PNV TY+ILI   C  G+IE  + L + M      P+  +Y+ L
Sbjct: 315 EEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPL 374

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           I++ F R+   D  VA + L  M+  G +P    +N VL  L   G    A EI 
Sbjct: 375 IAA-FCREGRLD--VAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIF 426


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 106/367 (28%), Positives = 180/367 (49%), Gaps = 8/367 (2%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+ +MK    GP  +T+  +       GK + A+ ++  M   G   +  +++ +++ L 
Sbjct: 329 LLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLY 388

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            E + E A  +F+ +       +  +YNVI  G+C +    KA  +  +M+  G +PN+ 
Sbjct: 389 VEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVI 448

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYNI++  YF+ G +  A R    MK    ++D  TY  ++ GF   G+++ A ++F+ M
Sbjct: 449 TYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEM 508

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           V  G+ P+V TYNA+I        V++A+ +F +MV  G +P+S TYN++I G   T  +
Sbjct: 509 VEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRI 568

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             A  F G+M      PNV TY   I   C  G      ++F +M      PNL TY+ L
Sbjct: 569 SEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSL 628

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I  +    +++D   A +LL    D G  P   T+  ++ GL   G    A +++    +
Sbjct: 629 IDGLCQEGQAED---AERLL----DDGCEPNVDTYTTLVRGLCGKGRCYEADQLVESMKK 681

Query: 484 CGRLPRQ 490
            G  P +
Sbjct: 682 KGLQPSE 688



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 104/355 (29%), Positives = 177/355 (49%), Gaps = 6/355 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   TF  + +   + GK   A  I   +  +G      ++ +++   CK   ++ A+ +
Sbjct: 200 PNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLDLAFEM 259

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F ++ +     + ++Y+ + NG C   R  +A+++L+EM+D+G+ P +  Y I +     
Sbjct: 260 FDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCD 319

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
           AG+  EA +   +MKKR C  +V TYT ++ G    G+ + A  V+  M+  G++P+  T
Sbjct: 320 AGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVT 379

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y+A+I  L  +   E A+ +FE M+    +PN+ TYNV+I+G C  G +++A     +M 
Sbjct: 380 YSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQML 439

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISSMFVRKKS 433
                PNV TYNI+I  +   G +   + L E M G+G+ L    TY  LIS      + 
Sbjct: 440 KAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTW-TYANLISGF---SRG 495

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             L  A  L  EMV+ G  P   T+N ++NG L +     A  +       G +P
Sbjct: 496 GKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVP 550



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 176/398 (44%), Gaps = 36/398 (9%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           + T  T+   M S    P  +T+ +I + + S G   +A  IF  M + G   ++ ++N 
Sbjct: 393 FETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNI 452

Query: 179 ILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           I+ +  K+  +  A  L ++ +G   K D  +Y  + +G+    +   A  +  EMV+ G
Sbjct: 453 IIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHG 512

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
           ++PN+ TYN ++ GY    ++++A   F +M +        TY  ++ GF     I  A 
Sbjct: 513 ISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAE 572

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN----------- 346
           N    MV  G+LP+V TY + I  LCK      A  +F EM  + Y PN           
Sbjct: 573 NFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGL 632

Query: 347 --------------------STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
                                 TY  ++RGLC  G    A + V  MK    +P+ + Y 
Sbjct: 633 CQEGQAEDAERLLDDGCEPNVDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSEEIYR 692

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            L+   C   E+E  L++F+ M +    P L  Y  LI ++    K++    A  +   M
Sbjct: 693 ALLVGQCKNLEVESALKIFDSMVTTGFQPCLSDYKALICALC---KANFRQKAQCMFQTM 749

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR-LQSR 483
           + + +   +  +  +L+GLL  G   L+ E+L  ++SR
Sbjct: 750 LKKHWNSDEVVWTVLLDGLLKEGETDLSLELLHVMESR 787



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 128/261 (49%), Gaps = 3/261 (1%)

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
           +V  EM++ G+ PNL T+N ++K     G+++EA      +       D  TYT+++ G 
Sbjct: 188 DVYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGH 247

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
              G +  A  +FD MV  G  P+  TY+A+I  LC +  +E A+ + EEM+ KG  P  
Sbjct: 248 CKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTV 307

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
             Y + I  LC  G    A++ +G+MK   C PNVQTY  LI      G+ E  + ++ K
Sbjct: 308 HAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHK 367

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467
           M +   +P   TY+ LI+ ++V  + +  L    +   M+    +P   T+N ++ G   
Sbjct: 368 MLADGLVPTAVTYSALINQLYVEGRFETALT---IFEWMLSHDSLPNTETYNVIIKGFCS 424

Query: 468 IGNQGLAKEILRLQSRCGRLP 488
           IG    A  I     + G  P
Sbjct: 425 IGYIQKATAIFDQMLKAGPSP 445



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 143/323 (44%), Gaps = 12/323 (3%)

Query: 98  TYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRA 157
           TYA+  S F       +R       ++L + M    + P   T+  I   Y++  K D A
Sbjct: 484 TYANLISGF-------SRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDA 536

Query: 158 VKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANG 216
           + +F  M E G   S  ++N ++    K  ++ +A N   K+ +     +VI+Y    +G
Sbjct: 537 LALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDG 596

Query: 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID 276
            C   RT+ A ++  EM  R   PNL TY+ ++ G  + GQ E+A R         CE +
Sbjct: 597 LCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLL----DDGCEPN 652

Query: 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE 336
           V TYTT+V G    G    A  + + M   G+ PS   Y A++   CK   VE+A+ +F+
Sbjct: 653 VDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFD 712

Query: 337 EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
            MV  G+ P  + Y  +I  LC     ++A      M       +   + +L+      G
Sbjct: 713 SMVTTGFQPCLSDYKALICALCKANFRQKAQCMFQTMLKKHWNSDEVVWTVLLDGLLKEG 772

Query: 397 EIERGLELFEKMGSGVCLPNLDT 419
           E +  LEL   M S  C  N  T
Sbjct: 773 ETDLSLELLHVMESRNCTLNFQT 795



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 99/187 (52%), Gaps = 3/187 (1%)

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           +++T++   G        R+V+  M+N G+ P++ T+NAMI++LC K  V+ A L+   +
Sbjct: 169 SFSTLLIQLGKFDMDGLGRDVYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHI 228

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
              G  P++ TY  +I G C  G ++ A E   RM  D C+PN  TY+ LI   C  G +
Sbjct: 229 FHYGACPDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRL 288

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           E  +++ E+M      P +  Y I I S+    +S +   A KLL +M  RG  P   T+
Sbjct: 289 EEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCE---AVKLLGKMKKRGCGPNVQTY 345

Query: 459 NRVLNGL 465
             +++GL
Sbjct: 346 TALISGL 352


>gi|359493281|ref|XP_002272603.2| PREDICTED: pentatricopeptide repeat-containing protein At5g55840-like
            [Vitis vinifera]
          Length = 2037

 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 117/392 (29%), Positives = 190/392 (48%), Gaps = 8/392 (2%)

Query: 103  PSSFDHAIDLAARLRDYRT--VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
            PS +   + LA+ ++D RT  VW+L   M    + P   TF I+       G   +A  +
Sbjct: 947  PSVYTCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNL 1006

Query: 161  FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL--FKVFRGKFKADVISYNVIANGWC 218
               M E+G   ++ ++NT+L+  CK+ + + A  L  + + +G  +ADV +YNV  +  C
Sbjct: 1007 LKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKG-IEADVCTYNVFIDNLC 1065

Query: 219  LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
               R+ KA  +LK+M    ++PN  TYN ++ G+ + G+I  A + F EM K     + V
Sbjct: 1066 TNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCV 1125

Query: 279  TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
            TY  ++ G   VG+ + A  + D M   G+  +  TY  ++  LCK +  E A  + E M
Sbjct: 1126 TYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERM 1185

Query: 339  VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
                 +     Y V+I GLC  G ++ A++ VG M  D   P+V TY+ LI  FC  G I
Sbjct: 1186 RVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNI 1245

Query: 399  ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
            +   E+  +M     + N   Y+ LI +     +  ++  A K+   M   G     FT 
Sbjct: 1246 KSAKEIICRMYRSGLVLNKIIYSTLIYNFC---QHGNVTEAMKVYAVMNCNGHGADHFTC 1302

Query: 459  NRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
            N +++ L   G  G A++ L   SR G +P  
Sbjct: 1303 NVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNS 1334



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 155/348 (44%), Gaps = 4/348 (1%)

Query: 139  KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV 198
              F ++   Y+  G  D AV+ F  +   G + S+ + N IL  + K+K+ E  ++LF+ 
Sbjct: 915  SVFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFRE 974

Query: 199  FRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
               K    +V ++N++ NG C+     KA  +LK+M + G  P + TYN +L  Y + G+
Sbjct: 975  MSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGR 1034

Query: 258  IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
             + A      M  +  E DV TY   +          +A  +   M    + P+  TYN 
Sbjct: 1035 YKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNT 1094

Query: 318  MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
            +I    K+  +  A  VF EM      PN  TYN +I G CH G+ E AL  +  M+   
Sbjct: 1095 LINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAG 1154

Query: 378  CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
               N  TY  L+   C   + E    L E+M     +     Y +LI  +      D+  
Sbjct: 1155 LRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDE-- 1212

Query: 438  VAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
             A +L+  M   G  P   T++ ++NG   +GN   AKEI+    R G
Sbjct: 1213 -AVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSG 1259



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/390 (26%), Positives = 179/390 (45%), Gaps = 7/390 (1%)

Query: 105  SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
            ++   I+   R+ + ++   ++ RM    L   +  ++ +   +   G    A+K++  M
Sbjct: 1231 TYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVM 1290

Query: 165  HEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRT 223
            + +G      + N ++  LC++ K+ +A   L  + R     + I+Y+ I NG+  +   
Sbjct: 1291 NCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDP 1350

Query: 224  NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
              A     +M+  G +P+  TY  +LKG  + G + EA +F   +      +D V Y T+
Sbjct: 1351 LNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTL 1410

Query: 284  VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
            +      G +  A  +FD MV   VLP   TY++++  LC+K     A+ +F   +G+G 
Sbjct: 1411 LAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGT 1470

Query: 344  M-PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
            + PN   Y  ++ GL   G  + A  F   M      P+   +N +I      G++ +  
Sbjct: 1471 LFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKAN 1530

Query: 403  ELFEKM-GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
            + F  M   GVC PNL TYNIL+   F +K++  LL    L   M+  G  P K TF+ +
Sbjct: 1531 DFFSTMRWWGVC-PNLATYNILLHG-FSKKQA--LLRYLSLYSTMMREGIFPDKLTFHSL 1586

Query: 462  LNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
            + GL   G   L  ++L      G L  QF
Sbjct: 1587 ILGLSKSGIPDLGVKLLGKMIMEGTLADQF 1616



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 174/374 (46%), Gaps = 6/374 (1%)

Query: 105  SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
            ++D  I+    + D    ++    M      P+  T+  + +     G    A K    +
Sbjct: 1336 TYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRL 1395

Query: 165  HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
            H          +NT+L   CK   + +A  LF K+ +     D  +Y+ +  G C   + 
Sbjct: 1396 HYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKA 1455

Query: 224  NKALEVLKEMVDRG-LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
              A+ +    + RG L PN   Y  ++ G  +AG  + A+ FF EM K+    D V +  
Sbjct: 1456 VTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNA 1515

Query: 283  IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
            I+      G++ +A + F  M   GV P++ATYN ++    KK ++   + ++  M+ +G
Sbjct: 1516 IIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREG 1575

Query: 343  YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
              P+  T++ +I GL  +G  +  ++ +G+M  +    +  T+NILI  + ++G++ +  
Sbjct: 1576 IFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAF 1635

Query: 403  ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
            +L   M +    P+ DTYN + + +    K      +  +L EM++ G +P+   +  ++
Sbjct: 1636 DLVNFMNTLGVFPDRDTYNHIFNGL---NKKSAFRESTVVLHEMLENGVIPKHAQYITLI 1692

Query: 463  NGLLLIGN-QGLAK 475
            NG+  +G+ QG  K
Sbjct: 1693 NGMCRVGDIQGAFK 1706



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 151/340 (44%), Gaps = 4/340 (1%)

Query: 127  HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186
            + M    L P   T+  +   +   G  + A+++   M   G R +  ++ T+L+ LCK 
Sbjct: 1113 NEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKH 1172

Query: 187  KKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
            +K E A  L +  R        I+Y V+ +G C     ++A++++  M   G+NP++ TY
Sbjct: 1173 EKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITY 1232

Query: 246  NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
            + ++ G+ R G I+ A      M +    ++ + Y+T+++ F   G +  A  V+  M  
Sbjct: 1233 SSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNC 1292

Query: 306  GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
             G      T N ++  LC+   +  A      M   G +PNS TY+ +I G    G+   
Sbjct: 1293 NGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLN 1352

Query: 366  ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
            A  F   M      P+  TY  L++  C  G +    +   ++       +   YN L++
Sbjct: 1353 AFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLA 1412

Query: 426  SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
                  KS +L  A  L  +MV    +P  +T++ +L GL
Sbjct: 1413 ETC---KSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGL 1449



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 143/340 (42%), Gaps = 5/340 (1%)

Query: 128  RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
             M  + L P   T+  I   Y S G    A   F  M + G   S  ++ ++L  LCK  
Sbjct: 1324 HMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGG 1383

Query: 188  K-VEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
              VE    L ++       D + YN +    C     ++A+ +  +MV   + P+  TY+
Sbjct: 1384 NLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYS 1443

Query: 247  IVLKGYFRAGQIEEAWRFF-LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
             +L G  R G+   A   F   M +     + V YT +V G    G  K A   F+ M+ 
Sbjct: 1444 SLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMK 1503

Query: 306  GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
             G  P    +NA+I    ++  +  A   F  M   G  PN  TYN+++ G      + R
Sbjct: 1504 KGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLR 1563

Query: 366  ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
             L     M  +   P+  T++ LI     +G  + G++L  KM     L +  T+NILI+
Sbjct: 1564 YLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILIN 1623

Query: 426  SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
                  +S  +  A  L+  M   G  P + T+N + NGL
Sbjct: 1624 KY---SESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGL 1660



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 166/383 (43%), Gaps = 7/383 (1%)

Query: 71   LVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMK 130
            LVD + K    H   A +FF  +    T   + + F+  ID  +R             M+
Sbjct: 1481 LVDGLSKA--GHPKAAFYFFEEMMKKGTCPDTVA-FNAIIDSCSRRGQMMKANDFFSTMR 1537

Query: 131  SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190
               + P   T+ I+   +       R + ++ +M   G      +F++++  L K    +
Sbjct: 1538 WWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPD 1597

Query: 191  KAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL 249
                L  K+      AD  ++N++ N +    +  KA +++  M   G+ P+  TYN + 
Sbjct: 1598 LGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIF 1657

Query: 250  KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
             G  +     E+     EM +         Y T+++G   VG+I+ A  + D M   G  
Sbjct: 1658 NGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFG 1717

Query: 310  PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
                  +AM++ L      E+A+LV + M+    +P   T+  ++   C   ++  AL+ 
Sbjct: 1718 SHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKL 1777

Query: 370  VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
             G M+    + +V  YN+LI   C  G+     EL+E+M      PN+ TY +L+ ++  
Sbjct: 1778 KGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAI-- 1835

Query: 430  RKKSDDLLVAGKLLIEMVDRGFM 452
               +++L+   KLL ++ +RG +
Sbjct: 1836 -SAANNLIQGEKLLTDLQERGLI 1857


>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
          Length = 745

 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 121/428 (28%), Positives = 192/428 (44%), Gaps = 58/428 (13%)

Query: 88  HFF-NILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAE 146
           HF  + +S + T++  P+SFD  +              L+ R++   + P+ +    +  
Sbjct: 188 HFVEHYISTYKTFSSDPASFDFLLLCLPSA-------PLLRRLRQYGISPSPEACNAVLS 240

Query: 147 RYVSAGKADRAVKIFLSM-HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA 205
           R       D A+++F  + H++ C     S+N +L  LC   +V+ A  LF         
Sbjct: 241 RL----PLDEAIELFQELPHKNVC-----SYNILLKALCDAGRVKDARQLFDEMASA--P 289

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           DV++Y ++ +G C +     A+++L EMV  G+ PN T Y  V+      G I +A R  
Sbjct: 290 DVVTYGILIHGHCALGELENAVKLLDEMVAGGVEPNATVYTSVVALLCDKGWISDALRVV 349

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
            +M +RK  +D   YTT++ GF   G++  AR  FD M   G+     TY  MI  LC+ 
Sbjct: 350 EDMVQRKVILDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRA 409

Query: 326 DSVENAILVFEE-----------------------------------MVGKGYMPNSTTY 350
             +E A  + +E                                   MV +G  PN  TY
Sbjct: 410 VELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTY 469

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
             +  GLC  G+++ A E +  M +   E N  TYN LI   C AG +E+ +     M +
Sbjct: 470 TALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDT 529

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
               P++ TY  LI ++    KS DL  A  LL EM+D+G  P   T+N ++NG  + G 
Sbjct: 530 ACLKPDVYTYTTLIDALC---KSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGR 586

Query: 471 QGLAKEIL 478
               K++L
Sbjct: 587 VEGGKKLL 594



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/373 (27%), Positives = 184/373 (49%), Gaps = 11/373 (2%)

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
           A R++D R ++        ++  P   T+ I+   + + G+ + AVK+   M   G   +
Sbjct: 272 AGRVKDARQLF------DEMASAPDVVTYGILIHGHCALGELENAVKLLDEMVAGGVEPN 325

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLK 231
              + +++ LLC +  +  A  + + + + K   D   Y  + +G+C       A     
Sbjct: 326 ATVYTSVVALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKGDLVSARRWFD 385

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
           EM  +GL  +  TY  ++ G  RA ++EEA +   EM  R+ ++D VTYT ++ G+   G
Sbjct: 386 EMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRG 445

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
           ++  A  + + MV  GV P+V TY A+   LCK+  V+ A  +  EM  KG   N+ TYN
Sbjct: 446 KMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYN 505

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
            +I GLC  G +E+A+  +  M     +P+V TY  LI   C +G+++R   L ++M   
Sbjct: 506 SLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDK 565

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
              P + TYN+L++   +  + +      KLL  M+++   P   T+N ++    +  N 
Sbjct: 566 GIKPTIVTYNVLMNGFCMSGRVEG---GKKLLDWMLEKNIHPNAATYNSLMKQYCIENNM 622

Query: 472 GLAKEILR-LQSR 483
               EI + ++SR
Sbjct: 623 KSTTEIYKGMRSR 635



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 162/333 (48%), Gaps = 8/333 (2%)

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
           R V  +V R   L     +  +  +   + + G    A + F  M   G      ++ T+
Sbjct: 347 RVVEDMVQRKVILD----EALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTM 402

Query: 180 LDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           ++ LC+  ++E+A  L + ++  +   D ++Y V+ +G+C   +  +A ++   MV RG+
Sbjct: 403 INGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGV 462

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
            PN+ TY  +  G  + G ++ A     EM  +  E++  TY ++++G    G +++A  
Sbjct: 463 TPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMR 522

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
               M    + P V TY  +I  LCK   ++ A  + +EM+ KG  P   TYNV++ G C
Sbjct: 523 TMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFC 582

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLD 418
            +G +E   + +  M +    PN  TYN L++ +C    ++   E+++ M S    PN +
Sbjct: 583 MSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPNEN 642

Query: 419 TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
           TYNILI       K+ ++  A     EM+ +GF
Sbjct: 643 TYNILIKGHC---KARNMKEALYFHDEMIQKGF 672



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 148/322 (45%), Gaps = 1/322 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M +  L   + T+ ++ + Y   GK   A ++  +M + G   ++ ++  + D LC
Sbjct: 418 LLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLC 477

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K+  V+ A  L      K  + +  +YN + NG C      +A+  + +M    L P++ 
Sbjct: 478 KQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVY 537

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY  ++    ++G ++ A     EM  +  +  +VTY  +++GF + G ++  + + D M
Sbjct: 538 TYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWM 597

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           +   + P+ ATYN++++  C ++++++   +++ M  +   PN  TYN++I+G C    M
Sbjct: 598 LEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPNENTYNILIKGHCKARNM 657

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + AL F   M          +Y+ LIR      +     ELF  M         D Y+  
Sbjct: 658 KEALYFHDEMIQKGFRLTATSYSALIRLLNKKKKFVEARELFHDMRKEGLTAESDVYDFY 717

Query: 424 ISSMFVRKKSDDLLVAGKLLIE 445
           I   F     +  L     L+E
Sbjct: 718 IDLNFNEDNLESTLALCDELVE 739



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 134/262 (51%), Gaps = 10/262 (3%)

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           ++A+E+ +E+  +    N+ +YNI+LK    AG++++A + F EM       DVVTY  +
Sbjct: 245 DEAIELFQELPHK----NVCSYNILLKALCDAGRVKDARQLFDEMASAP---DVVTYGIL 297

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +HG   +GE++ A  + D MV GGV P+   Y +++ +LC K  + +A+ V E+MV +  
Sbjct: 298 IHGHCALGELENAVKLLDEMVAGGVEPNATVYTSVVALLCDKGWISDALRVVEDMVQRKV 357

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
           + +   Y  V+ G C+ G++  A  +   M+      +  TY  +I   C A E+E   +
Sbjct: 358 ILDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEK 417

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           L ++M +     +  TY +LI     R K   +  A ++   MV RG  P   T+  + +
Sbjct: 418 LLQEMWARRLDVDEVTYTVLIDGYCKRGK---MAEAFQMHNAMVQRGVTPNVVTYTALTD 474

Query: 464 GLLLIGNQGLAKEILRLQSRCG 485
           GL   G+   A E+L   S  G
Sbjct: 475 GLCKQGDVQAANELLHEMSNKG 496


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 167/332 (50%), Gaps = 4/332 (1%)

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYN 211
           +AD A K F  M E G    + + N +L L  K  ++E A+ L+ ++FR +  + V ++N
Sbjct: 194 RADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFN 253

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
           ++ N  C   +  KA E +  M   G  PN+ +YN ++ GY   G IE A R    M+ +
Sbjct: 254 IMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVK 313

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
             E D  TY +++ G    G ++ A  +FD MV  G++P+  TYN +I   C K  +E A
Sbjct: 314 GIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERA 373

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
               +EMV KG MP+ +TYN+++  L   G M  A + +  M+     P+  TYNILI  
Sbjct: 374 FSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILING 433

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
           +   G  ++  +L  +M S    P   TY  LI   +V  + + +  A  L  +++D+G 
Sbjct: 434 YSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLI---YVLSRRNRMKEADDLFEKILDQGV 490

Query: 452 MPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
            P    FN +++G    GN   A  +L+   R
Sbjct: 491 SPDVIMFNAMVDGHCANGNVERAFMLLKEMDR 522



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 183/352 (51%), Gaps = 4/352 (1%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M+ L   P   ++  I   Y S G  + A +I  +M   G      ++ +++  +CKE +
Sbjct: 275 MEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGR 334

Query: 189 VEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           +E+A  LF K+       + ++YN + +G+C      +A     EMV +G+ P+++TYN+
Sbjct: 335 LEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNL 394

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++   F  G++ EA     EM+K+    D +TY  +++G+   G  K+A ++ + M++ G
Sbjct: 395 LVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKG 454

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           + P+  TY ++I VL +++ ++ A  +FE+++ +G  P+   +N ++ G C  G +ERA 
Sbjct: 455 IEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAF 514

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
             +  M      P+  T+N L++  C  G++E    L ++M      P+  +YN LIS  
Sbjct: 515 MLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGY 574

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
             R    D+  A ++  EM+  GF P   T+N ++  L       LA+E+L+
Sbjct: 575 GRR---GDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLK 623



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/376 (28%), Positives = 195/376 (51%), Gaps = 15/376 (3%)

Query: 91  NILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVS 150
           N++SY+ T  H  SS  + I+ A R+ D          M+   + P   T+  +      
Sbjct: 283 NVVSYN-TIIHGYSSRGN-IEGARRILD---------AMRVKGIEPDSYTYGSLISGMCK 331

Query: 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVIS 209
            G+ + A  +F  M E G   +  ++NT++D  C +  +E+A++   ++ +      V +
Sbjct: 332 EGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVST 391

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           YN++ +   +  R  +A +++KEM  +G+ P+  TYNI++ GY R G  ++A+    EM 
Sbjct: 392 YNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEML 451

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
            +  E   VTYT++++       +K A ++F+ +++ GV P V  +NAM+   C   +VE
Sbjct: 452 SKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVE 511

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
            A ++ +EM  K   P+  T+N +++G C  G++E A   +  MK    +P+  +YN LI
Sbjct: 512 RAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLI 571

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
             +   G+I+    + ++M S    P L TYN LI  +   ++ D   +A +LL EMV++
Sbjct: 572 SGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGD---LAEELLKEMVNK 628

Query: 450 GFMPRKFTFNRVLNGL 465
           G  P   T+  ++ G+
Sbjct: 629 GISPDDSTYLSLIEGM 644



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 126/281 (44%), Gaps = 38/281 (13%)

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           I ++++    C ++R ++A +    M ++G+ P + T N +L  + +  ++E AW  + E
Sbjct: 180 IVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAE 239

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M + +                                   +  +V T+N M+ VLCK+  
Sbjct: 240 MFRLR-----------------------------------ISSTVYTFNIMVNVLCKEGK 264

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
           ++ A      M G G+ PN  +YN +I G    G +E A   +  M+    EP+  TY  
Sbjct: 265 LKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGS 324

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           LI   C  G +E    LF+KM     +PN  TYN LI   +  K   DL  A     EMV
Sbjct: 325 LISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDG-YCNK--GDLERAFSYRDEMV 381

Query: 448 DRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            +G MP   T+N +++ L + G  G A ++++   + G +P
Sbjct: 382 KKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIP 422



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 118/257 (45%), Gaps = 39/257 (15%)

Query: 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH 167
           HA+ +  R+ +      ++  M+   + P   T+ I+   Y   G A +A  +   M   
Sbjct: 397 HALFMEGRMGE---ADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSK 453

Query: 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKA 226
           G   +  ++ +++ +L +  ++++A +LF K+       DVI +N + +G C      +A
Sbjct: 454 GIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERA 513

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
             +LKEM  + + P+  T+N +++G  R G++EEA     EMK+R  + D ++Y T++ G
Sbjct: 514 FMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISG 573

Query: 287 FGVVGEIKRARNVFDGM-----------------------------------VNGGVLPS 311
           +G  G+IK A  V D M                                   VN G+ P 
Sbjct: 574 YGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPD 633

Query: 312 VATYNAMIQVLCKKDSV 328
            +TY ++I+ +   D++
Sbjct: 634 DSTYLSLIEGMGNVDTL 650


>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
 gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
          Length = 738

 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 172/332 (51%), Gaps = 5/332 (1%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA-YNLFKV 198
           T+ I       AG+   AV++   M  +     + ++NT++  LCK+   ++A + L ++
Sbjct: 226 TYNIWIRGLCEAGRLPEAVRLVDGMRAYAVPDVV-TYNTLIRGLCKKSMPQEAMHYLRRM 284

Query: 199 FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
                  D  +YN I +G+C +    +A E+LK+ V +G  P+  TY  ++ G    G +
Sbjct: 285 MNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDV 344

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           E A   F E + +  + D+V Y ++V G  + G I  A  V + M   G  P + TYN +
Sbjct: 345 ERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIV 404

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           I  LCK  ++ +A +V  + + KGY+P+  T+N +I G C   +++ AL+ V RM +   
Sbjct: 405 INGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGI 464

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
            P+  TYN ++   C AG++    E F++M    C PN  TYNILI + F R  S+ +  
Sbjct: 465 APDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIEN-FCR--SNKMEE 521

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
           A K++++M   G  P   +FN ++ G    G+
Sbjct: 522 ASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGD 553



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 108/395 (27%), Positives = 178/395 (45%), Gaps = 33/395 (8%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           RM +    P   T+  I + Y        A ++       G      ++ ++++ LC E 
Sbjct: 283 RMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEG 342

Query: 188 KVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
            VE+A  LF   + K  K D++ YN +  G CL      AL+V+ EM + G +P++ TYN
Sbjct: 343 DVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYN 402

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
           IV+ G  + G I +A     +   +    DV T+ T++ G+    ++  A  + + M   
Sbjct: 403 IVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEY 462

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G+ P   TYN+++  LCK   V      F+EM+ KG  PN  TYN++I   C + +ME A
Sbjct: 463 GIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEA 522

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
            + + +M  +   P+  ++N LI  FC  G++E    LF+K+         DT+N LI +
Sbjct: 523 SKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGA 582

Query: 427 M-------FVRKKSDDLLVAGKL-------------------------LIEMVDRGFMPR 454
                      K  D++L  G                           L+EM+ +GF+P 
Sbjct: 583 FSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPS 642

Query: 455 KFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPR 489
             TF RV+N L +      A  I+ +  + G +P 
Sbjct: 643 MSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPE 677



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 109/400 (27%), Positives = 178/400 (44%), Gaps = 18/400 (4%)

Query: 94  SYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGK 153
           + HP Y  S  ++  A     RLRD    +    RM   +  P    +  I +  V A  
Sbjct: 51  TIHPLYVASIRAYARA----GRLRDAVDAF---ERMDLFACPPAAPAYNAIMDALVDAAY 103

Query: 154 ADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYN 211
            D+A K+++ M   G    L++    L   C   +   A  L +    RG      ++Y 
Sbjct: 104 HDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRG-----AVAYC 158

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
            +  G      T+ A ++  +M+   + PNL  +N VL    + G + EA     ++ +R
Sbjct: 159 TVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQR 218

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
              I++ TY   + G    G +  A  + DGM     +P V TYN +I+ LCKK   + A
Sbjct: 219 GMSINLFTYNIWIRGLCEAGRLPEAVRLVDGM-RAYAVPDVVTYNTLIRGLCKKSMPQEA 277

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
           +     M+ +G +P+  TYN +I G C    ++ A E +         P+  TY  LI  
Sbjct: 278 MHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLING 337

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
            C  G++ER LELF +  +    P++  YN L+  + ++     +L A +++ EM + G 
Sbjct: 338 LCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGL---ILHALQVMNEMAEEGC 394

Query: 452 MPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
            P   T+N V+NGL  +GN   A  ++      G LP  F
Sbjct: 395 HPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVF 434



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 135/266 (50%), Gaps = 1/266 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           +++ M      P  +T+ I+       G    A  +       G    + +FNT++D  C
Sbjct: 385 VMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYC 444

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  K++ A  L  +++      D I+YN + NG C   + N+  E  +EM+ +G +PN  
Sbjct: 445 KRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPI 504

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYNI+++ + R+ ++EEA +  ++M +     D V++ T+++GF   G+++ A  +F  +
Sbjct: 505 TYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKL 564

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G   +  T+N +I     K ++  A  +F+EM+ KG+  +S TY V+I G C T  +
Sbjct: 565 EEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANV 624

Query: 364 ERALEFVGRMKDDECEPNVQTYNILI 389
           +RA   +  M      P++ T+  +I
Sbjct: 625 DRAYMHLVEMIKKGFIPSMSTFGRVI 650



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 105/242 (43%), Gaps = 1/242 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  ID   +     +   LV RM    + P   T+  +      AGK +   + F  M
Sbjct: 435 TFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEM 494

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRT 223
              GC  +  ++N +++  C+  K+E+A   + K+ +     D +S+N +  G+C     
Sbjct: 495 ILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDL 554

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
             A  + +++ ++G +    T+N ++  +     +  A + F EM  +    D  TY  +
Sbjct: 555 EGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVL 614

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G      + RA      M+  G +PS++T+  +I  L     V  A+ +   MV  G 
Sbjct: 615 IDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGV 674

Query: 344 MP 345
           +P
Sbjct: 675 VP 676



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 106/223 (47%), Gaps = 6/223 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+ I+ E +  + K + A K+ + M + G      SFNT++   C+   +E AY L
Sbjct: 501 PNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLL 560

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F+    K + A   ++N +   +      + A ++  EM+ +G   +  TY +++ G  +
Sbjct: 561 FQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCK 620

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
              ++ A+   +EM K+     + T+  +++   V   + +A  +   MV  GV+P V  
Sbjct: 621 TANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEVVD 680

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
               I    KK+     ILV E+++ KG++ +  TY V+  G+
Sbjct: 681 ---TILNADKKEIAAPKILV-EDLMKKGHI-SYPTYEVLHEGV 718


>gi|32489931|emb|CAE05523.1| OSJNBa0038P21.16 [Oryza sativa Japonica Group]
 gi|38347491|emb|CAE05839.2| OSJNBa0091C07.1 [Oryza sativa Japonica Group]
          Length = 844

 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 124/469 (26%), Positives = 218/469 (46%), Gaps = 66/469 (14%)

Query: 68  TPQLVDQIIKRL--W---NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTV 122
            P L  ++ KR+  W    H+   +H +NIL                ID   R+      
Sbjct: 152 APALAIELFKRMDRWACPRHSPPTIHTYNIL----------------IDCYRRVHRPDLG 195

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
             +V R+    LGP   ++++I   +V  G+ D+A  +FL M E G    +   N+I+  
Sbjct: 196 LAIVGRLLKNGLGPDDFSYSLIY-GFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKE 254

Query: 183 LCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           LCK K+++KA ++  K+       D+ +Y++I +G C  K  +KA  VL++MV+ G  PN
Sbjct: 255 LCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPN 314

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMK-------------------------KRKC--- 273
             TYN ++ GY  +G   E+ R F +M                          + KC   
Sbjct: 315 SITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFD 374

Query: 274 -------EIDVVTYTTIVHGFGVVGE--IKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
                  + D+++Y+T++HG+    +  +    N+F+ M+  G+ P+   +N +I    +
Sbjct: 375 SMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYAR 434

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
              ++ A+L+FE+M  KG +P++ T+  VI  LC  G ++ AL     M D    P+   
Sbjct: 435 CGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAV 494

Query: 385 YNILIRYFCDAGEIERGLELF-EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
           Y  LI+  C+ GE+ +  EL  E M   +  P +  ++ +I+++    +    +  GK +
Sbjct: 495 YGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGR----VAEGKDI 550

Query: 444 IEM-VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           ++M V  G  P   TFN ++ G  L+GN   A  +L   +  G  P  +
Sbjct: 551 MDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCY 599



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 110/468 (23%), Positives = 190/468 (40%), Gaps = 89/468 (19%)

Query: 102 SPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           +P  F ++  ID   + +       ++ +M      P   T+  +   Y  +G  + +V+
Sbjct: 277 APDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVR 336

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGW 217
           +F  M   G   ++++ N+ +  L K  +  +A  +F   V +G  K D+ISY+ + +G+
Sbjct: 337 VFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGP-KPDIISYSTMLHGY 395

Query: 218 ------CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
                 CL    N    +   M+ +G+ PN   +NI++  Y R G +++A   F +M+ +
Sbjct: 396 ATATDSCLADVHN----IFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNK 451

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV---------- 321
               D VT+ T++     +G +  A + F+ MV+ GV PS A Y  +IQ           
Sbjct: 452 GMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKA 511

Query: 322 --------------------------LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
                                     LCK+  V     + + MV  G  PN  T+N ++ 
Sbjct: 512 KELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLME 571

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
           G C  G ME A   +  M     EPN   Y  L+  +C  G I+  L +F  M      P
Sbjct: 572 GYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKP 631

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG------------------------- 450
               Y+I++  +F  +++     A K+  EM++ G                         
Sbjct: 632 TSVLYSIILHGLFQARRT---TAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEAN 688

Query: 451 -------FMPRKF---TFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
                   M  KF   TFN V++ +  +G +  AKE+    S  G +P
Sbjct: 689 MLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVP 736



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 166/354 (46%), Gaps = 10/354 (2%)

Query: 116 LRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS 175
           L D   ++ L   M +  + P +  F I+   Y   G  D+A+ IF  M   G      +
Sbjct: 403 LADVHNIFNL---MLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVT 459

Query: 176 FNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           F T++  LC+  +++ A + F   V  G   ++ + Y  +  G C      KA E++ EM
Sbjct: 460 FATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAV-YGCLIQGCCNHGELVKAKELISEM 518

Query: 234 VDRGL-NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           +++ +  P +  ++ ++    + G++ E       M +     +VVT+ +++ G+ +VG 
Sbjct: 519 MNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGN 578

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           ++ A  + D M + G+ P+   Y  ++   CK   +++A+ VF +M+ KG  P S  Y++
Sbjct: 579 MEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSI 638

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           ++ GL        A +    M +     ++ TY +++   C     +    L EK+ +  
Sbjct: 639 ILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMN 698

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
              ++ T+NI+IS+MF   +  +   A +L   +   G +P   T++ ++  L+
Sbjct: 699 VKFDIITFNIVISAMFKVGRRQE---AKELFDAISTYGLVPNIQTYSMMITNLI 749



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 165/380 (43%), Gaps = 7/380 (1%)

Query: 91  NILSYHPTYAHSPSS--FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERY 148
           NI +   T   +P+   F+  I+  AR         +   M++  + P   TFA +    
Sbjct: 408 NIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSL 467

Query: 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF--KAD 206
              G+ D A+  F  M + G   S   +  ++   C   ++ KA  L      K      
Sbjct: 468 CRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPG 527

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           V  ++ I N  C   R  +  +++  MV  G  PN+ T+N +++GY   G +EEA+    
Sbjct: 528 VKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLD 587

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
            M     E +   Y T+V G+   G I  A  VF  M++ GV P+   Y+ ++  L +  
Sbjct: 588 AMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQAR 647

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
               A  +F EM+  G   +  TY VV+ GLC     + A   + ++     + ++ T+N
Sbjct: 648 RTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFN 707

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
           I+I      G  +   ELF+ + +   +PN+ TY+++I+++   +  ++   A  L I +
Sbjct: 708 IVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEE---ADNLFISV 764

Query: 447 VDRGFMPRKFTFNRVLNGLL 466
              G        N ++  LL
Sbjct: 765 EKSGHASDSRLLNHIVRMLL 784



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 129/271 (47%), Gaps = 1/271 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   TF  + E Y   G  + A  +  +M   G   +   + T++D  CK  +++ A  +
Sbjct: 561 PNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTV 620

Query: 196 FK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F+ +     K   + Y++I +G    +RT  A ++  EM++ G   ++ TY +VL G  R
Sbjct: 621 FRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCR 680

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
               +EA     ++     + D++T+  ++     VG  + A+ +FD +   G++P++ T
Sbjct: 681 NNCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQT 740

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y+ MI  L K++S E A  +F  +   G+  +S   N ++R L +  E+ +A  ++  + 
Sbjct: 741 YSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIVRMLLNKAEVAKASNYLSIIG 800

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           ++       T ++L   F   G+    ++L 
Sbjct: 801 ENNLTLEASTISLLASLFSREGKYREHIKLL 831


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 92/299 (30%), Positives = 152/299 (50%), Gaps = 7/299 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           PT  TF  +          + A  +   M   G +  + ++NT++D LCK  ++++A  L
Sbjct: 150 PTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQL 209

Query: 196 FKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            +  +    A DV++Y+    G C   +   A +VL++M D   +PN+ TYN +L G  +
Sbjct: 210 LERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCK 269

Query: 255 AGQIEEAWRFFLEMKKRK-CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
           +G+I+ A     +M     C ++VV Y+T+V G   +G  + AR+V + M   G  P V 
Sbjct: 270 SGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVV 329

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           TY++++  LCK   +E A+    EM  +G  PN+ TY  ++ GLC  G +  A   V  M
Sbjct: 330 TYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEM 389

Query: 374 -----KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
                    C P+V TYN LI   C AG I+  L+ F++M S  C P+  +Y+ ++  +
Sbjct: 390 SSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGL 448



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 175/382 (45%), Gaps = 42/382 (10%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   TF  +   +   G+     ++  +M     + ++ S+N +L+ LCK ++  +A  L
Sbjct: 8   PNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWHEAEEL 67

Query: 196 FK--VFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN----------- 241
            +  + RG +   D+++Y+ + +G+C   +  ++ E+LKE++ RGL P+           
Sbjct: 68  VRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASL 127

Query: 242 ------------------------LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
                                   L T+N ++ G  R   +E A     +M     + DV
Sbjct: 128 CKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADV 187

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           VTY T++ G    G ++ A  + + M   G  P V  Y++ +  LCK   V +A  V E+
Sbjct: 188 VTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQ 247

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM-KDDECEPNVQTYNILIRYFCDAG 396
           M    + PN  TYN ++ GLC +G+++ ALE + +M   D C  NV  Y+ ++   C  G
Sbjct: 248 MRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLG 307

Query: 397 EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
             +    + E M    C P++ TY+ L++ +    K ++ + A   + EM   G  P   
Sbjct: 308 RTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEA---VREMAMEGCKPNAV 364

Query: 457 TFNRVLNGLLLIGNQGLAKEIL 478
           T+  +++GL   G    A+ ++
Sbjct: 365 TYCSLVHGLCSCGRLAEAERMV 386



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 155/306 (50%), Gaps = 25/306 (8%)

Query: 70  QLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRM 129
           ++ D +++++    +KA    ++++Y+        +    +  A RL++      L+ RM
Sbjct: 169 EMADSLLQKMAASGVKA----DVVTYN--------TLMDGLCKAGRLQE---AEQLLERM 213

Query: 130 KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV 189
           K+    P    ++        +GK   A ++   M +     ++ ++NTILD LCK  K+
Sbjct: 214 KASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKI 273

Query: 190 EKAYNLFKVFRGKFKA--DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           + A  + +          +V+ Y+ + +G C + RT +A  V++ M   G  P++ TY+ 
Sbjct: 274 DTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSS 333

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ G  +AG+IEEA     EM    C+ + VTY ++VHG    G +  A  + + M +GG
Sbjct: 334 LVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGG 393

Query: 308 VL-----PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
                  PSV+TYNA+I  LCK   +++A+  F+ M  +G  P+  +Y+ ++ GL  +G 
Sbjct: 394 GGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSG- 452

Query: 363 MERALE 368
             RAL+
Sbjct: 453 --RALQ 456



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 128/283 (45%), Gaps = 41/283 (14%)

Query: 234 VDR-GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK---------------CEI-- 275
           +DR G  PN  T+N ++ G+ + G+  +  R    M  R                C++  
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLER 60

Query: 276 --------------------DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
                               D+VTY+T++ G+   G+++ +R +   +++ G+ P    Y
Sbjct: 61  WHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMY 120

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
             ++  LCK   +  A+ + EEM+  G  P   T+N +I G C    +E A   + +M  
Sbjct: 121 TKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAA 180

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
              + +V TYN L+   C AG ++   +L E+M +  C P++  Y+  +  +    KS  
Sbjct: 181 SGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLC---KSGK 237

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           +L A ++L +M D    P   T+N +L+GL   G    A E++
Sbjct: 238 VLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMM 280



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 109/239 (45%), Gaps = 45/239 (18%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           SSF + +  + ++ D   V   + +M+     P   T+  I +    +GK D A+++   
Sbjct: 226 SSFVYGLCKSGKVLDAHQV---LEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQ 282

Query: 164 M-HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVK 221
           M    GC  ++  ++T++D LCK  + ++A ++ +   R   + DV++Y+ + NG C   
Sbjct: 283 MASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAG 342

Query: 222 RTNKALEVLKEMVDRGLNPN---------------------------------------- 241
           +  +A+E ++EM   G  PN                                        
Sbjct: 343 KIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPS 402

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           ++TYN ++ G  +AG+I++A +FF  M+ + C+ D V+Y+TIV G    G   +A  + 
Sbjct: 403 VSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQAEMIL 461



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 103/223 (46%), Gaps = 5/223 (2%)

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M +  C  + VT+  +V+GF   G       + + M    + P+V +YN +++ LCK + 
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLER 60

Query: 328 VENAILVFEEMVGKG--YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
              A  +  +M+ +G    P+  TY+ ++ G C  G++E + E +  +      P+   Y
Sbjct: 61  WHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMY 120

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
             ++   C +  +   LEL E+M    C P L T+N LIS     K   +L +A  LL +
Sbjct: 121 TKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREK---NLEMADSLLQK 177

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           M   G      T+N +++GL   G    A+++L      G  P
Sbjct: 178 MAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAP 220



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/190 (18%), Positives = 80/190 (42%), Gaps = 6/190 (3%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           AL     ++       +   +   +D   +L   +   +++  M      P   T++ + 
Sbjct: 276 ALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLV 335

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA 205
                AGK + AV+    M   GC+ +  ++ +++  LC   ++ +A  + +        
Sbjct: 336 NGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGG 395

Query: 206 ------DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
                  V +YN +  G C   R + AL+  + M  +G +P+  +Y+ +++G  R+G+  
Sbjct: 396 GHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRAL 455

Query: 260 EAWRFFLEMK 269
           +A     E++
Sbjct: 456 QAEMILSEVR 465


>gi|255547888|ref|XP_002515001.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546052|gb|EEF47555.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 466

 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 115/420 (27%), Positives = 200/420 (47%), Gaps = 8/420 (1%)

Query: 62  CPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRT 121
           C S+H + +LVD+++ R  +    AL  F        Y HSP ++D  +D+  +++    
Sbjct: 44  CNSIHLSHELVDKLLFRFKDDWKSALGVFRWAESRAGYKHSPEAYDTMVDIMGKMKQMDQ 103

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
           +  L+  M+      T KT      R+  A + +  +++F  +   G  ++  S N +LD
Sbjct: 104 MEFLLEEMEK-GQHVTLKTVGKAMRRFAGARQWENVLRVFDKLGTFGLEKNTESMNLLLD 162

Query: 182 LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
            LCKE+KVE A  +F   +     +  ++N+  +GWC V R  +A   ++EM   G  P 
Sbjct: 163 TLCKERKVELAREIFLDLKSHISPNANTFNIFIHGWCKVNRVEEAYWTIQEMKGHGCTPC 222

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           + +Y+ +++ Y       + +    EM+ +    +VVTYT+++       E + A  +  
Sbjct: 223 VISYSTIVQFYCHRSNFSKVYELLDEMEAQGLIPNVVTYTSVMSALAKSEEYEEALQIAQ 282

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE-EMVGKGYMPNSTTYNVVIRGLCHT 360
            M + G  P    YN++I  L K    E AI VFE EM   G  PN++TYN +I  LCH 
Sbjct: 283 RMKSVGCKPDTLFYNSLIHTLGKAGRPEEAIQVFEVEMPNTGVPPNTSTYNSMIAMLCHH 342

Query: 361 GEMERALEFVGRMKDD-ECEPNVQTYNILIRYFCDAGEIERGL-ELFEKMGSGVCLP-NL 417
            +  +AL  +  ++    C+P+VQTY  L++    AG I+  L +L + M     L  + 
Sbjct: 343 SQERKALNLLKEIEASIICKPDVQTYYPLLKSCFKAGSIDSLLSQLLDDMVKKHHLSLDF 402

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
             Y +L+  +    K +    A  L  EM+ +   P+  T   +L+ + L      A++I
Sbjct: 403 SAYTLLVHGLCRANKCE---WAYCLFEEMIGKDMTPKYQTCRLLLDEVKLKHMYDAAQKI 459


>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 550

 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 103/349 (29%), Positives = 175/349 (50%), Gaps = 4/349 (1%)

Query: 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK 197
           + T+  +       G    A ++   M     R ++  +N I+D LCK+  V +A +L+ 
Sbjct: 183 EVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYS 242

Query: 198 VFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256
              G+    DV +Y  + +G+C + +  +   +L +MVDR +N N+ TYNI++    + G
Sbjct: 243 DVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKG 302

Query: 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
            + +A      M +R    D+VT+ T++ G+ +  ++  AR +FD     G+ P V +YN
Sbjct: 303 MLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYN 362

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
            +I   CK + ++ A+ +F +M  K   PN  TY+ +I GLC +G +  A E    + D 
Sbjct: 363 ILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDG 422

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
              PNV TYNI++   C    +++ +ELF  M      PN+ +YNILI+     K+ D+ 
Sbjct: 423 GPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDE- 481

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
             A  L  EM  R  +P   T+N +++GL   G    A E+  +    G
Sbjct: 482 --AMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGG 528



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 156/296 (52%), Gaps = 3/296 (1%)

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
            + P   T+  +   +   G+     ++   M +     ++ ++N ++D LCK+  + KA
Sbjct: 248 GIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKA 307

Query: 193 YNL--FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250
           +++    + RG+ + D++++N + +G+CL     +A ++     + G+ P++ +YNI++ 
Sbjct: 308 HDMRNLMIERGQ-RPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILII 366

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
           GY +  +I+EA   F +M  +K   ++VTY++++ G    G I  A  +F  + +GG  P
Sbjct: 367 GYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSP 426

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           +V TYN M+  LCK   V+ AI +F  M  +G  PN ++YN++I G C +  ++ A+   
Sbjct: 427 NVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLF 486

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
             M      P+  TYN LI   C +G I    ELF  M  G    ++ TYNIL  +
Sbjct: 487 EEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGGPPVDVITYNILFDA 542



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 111/401 (27%), Positives = 187/401 (46%), Gaps = 6/401 (1%)

Query: 89  FFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERY 148
           F  +++ HP    S   F+  +    +++ Y T  +L  +M    + P+  T +I+   Y
Sbjct: 66  FTRLITMHPL--PSVVEFNMILGSIVKMKHYPTAISLSKQMGLRGITPSIVTLSILINCY 123

Query: 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADV 207
              G    A  +   + + G + +  +  TI+  LC   +V KA      V    F  D 
Sbjct: 124 CHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQGFLLDE 183

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           ++Y  + NG C +  T +A E+L +M  + + PN+  YN+++ G  + G + EA   + +
Sbjct: 184 VTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSD 243

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           +  R  + DV TYT ++HGF  +G+ +    +   MV+  V  +V TYN +I  LCKK  
Sbjct: 244 VVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGM 303

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
           +  A  +   M+ +G  P+  T+N ++ G C   ++  A +      +    P+V +YNI
Sbjct: 304 LGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNI 363

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           LI  +C    I+  L LF KM      PN+ TY+ LI  +    KS  +  A +L   + 
Sbjct: 364 LIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLC---KSGRISYAWELFSAIH 420

Query: 448 DRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           D G  P   T+N +L+ L  I     A E+  L    G  P
Sbjct: 421 DGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTP 461



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 139/278 (50%), Gaps = 1/278 (0%)

Query: 116 LRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS 175
           L  +R V  L+  M   ++     T+ I+ +     G   +A  +   M E G R  L +
Sbjct: 266 LGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVT 325

Query: 176 FNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           FNT++   C    V +A  LF  F       DV SYN++  G+C   R ++AL +  +M 
Sbjct: 326 FNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMN 385

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
            + L PN+ TY+ ++ G  ++G+I  AW  F  +       +V+TY  ++     +  + 
Sbjct: 386 YKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVD 445

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
           +A  +F+ M   G+ P+V++YN +I   CK   ++ A+ +FEEM  +  +P+S TYN +I
Sbjct: 446 KAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLI 505

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
            GLC +G +  A E    M D     +V TYNIL   F
Sbjct: 506 DGLCKSGRISHAWELFNVMHDGGPPVDVITYNILFDAF 543



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 105/194 (54%), Gaps = 1/194 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   ++ I+   Y    + D A+ +F  M+      ++ ++++++D LCK  ++  A+ L
Sbjct: 356 PDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWEL 415

Query: 196 FK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F  +  G    +VI+YN++ +  C ++  +KA+E+   M +RGL PN+++YNI++ GY +
Sbjct: 416 FSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCK 475

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
           + +I+EA   F EM +R    D VTY  ++ G    G I  A  +F+ M +GG    V T
Sbjct: 476 SKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGGPPVDVIT 535

Query: 315 YNAMIQVLCKKDSV 328
           YN +     K   V
Sbjct: 536 YNILFDAFSKIQHV 549



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 114/221 (51%), Gaps = 12/221 (5%)

Query: 79  LWNHALKALHFFNILSYHPTYAH---SPSSFDHAIDLAARLRDYRT--VWTLVHRMKSLS 133
           L+N  ++A   F+      T+A    +P  + + I +    ++ R     +L ++M    
Sbjct: 335 LYNDVVEARKLFD------TFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKK 388

Query: 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
           L P   T++ + +    +G+   A ++F ++H+ G   ++ ++N +LD LCK + V+KA 
Sbjct: 389 LAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAI 448

Query: 194 NLFKV-FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
            LF + F      +V SYN++ NG+C  KR ++A+ + +EM  R L P+  TYN ++ G 
Sbjct: 449 ELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGL 508

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
            ++G+I  AW  F  M      +DV+TY  +   F  +  +
Sbjct: 509 CKSGRISHAWELFNVMHDGGPPVDVITYNILFDAFSKIQHV 549



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 93/236 (39%), Gaps = 43/236 (18%)

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM-------------- 338
           I  A  +F  ++    LPSV  +N ++  + K      AI + ++M              
Sbjct: 59  IDDAVALFTRLITMHPLPSVVEFNMILGSIVKMKHYPTAISLSKQMGLRGITPSIVTLSI 118

Query: 339 ---------------------VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
                                + +GY  N+ T   +++GLC  GE+ +ALEF   +    
Sbjct: 119 LINCYCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQG 178

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
              +  TY  LI   C  G      EL  KM   V  PN+  YN+++  +    K   + 
Sbjct: 179 FLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLC---KDGLVT 235

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQFKL 493
            A  L  ++V RG  P  FT+  +++G   +G     +E+ RL   C  + R   L
Sbjct: 236 EARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQW---REVTRLL--CDMVDRNVNL 286


>gi|115477950|ref|NP_001062570.1| Os09g0110200 [Oryza sativa Japonica Group]
 gi|46806362|dbj|BAD17538.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|46806431|dbj|BAD17588.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|113630803|dbj|BAF24484.1| Os09g0110200 [Oryza sativa Japonica Group]
          Length = 794

 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 173/353 (49%), Gaps = 11/353 (3%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            L +RM +    P + T+ ++ +     G A  A+K+F  M + G   ++  +  +L  L
Sbjct: 193 ALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSL 252

Query: 184 CKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           C   K+++A  L    + K    D ++YN   +G C V R N+A + L  + D G    L
Sbjct: 253 CNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGL 312

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
             Y+ ++ G F+A + +E + ++  M +R    DVV YT ++ G    G I+ A +  D 
Sbjct: 313 KGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDV 372

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M   G +P    YN +++VLC    +E A  +  EM+    + +STT  ++I GLC  G 
Sbjct: 373 MKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGL 432

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG----VCLPNLD 418
           ++ A++    M +  C+P V TYN LI  F   G +E    LF KM  G    + L    
Sbjct: 433 VDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTL 492

Query: 419 TYNILISSMFVRK------KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
             N +  S  +RK      +S  +L A KLL  ++D G +P   T+N ++NGL
Sbjct: 493 GANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGL 545



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 137/289 (47%), Gaps = 18/289 (6%)

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
           ++ P    + I+      AG+ + A+     M + G       +NT+L +LC    +E+A
Sbjct: 342 NISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERA 401

Query: 193 YNL-FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
           + L  ++ +     D  +  ++  G C     ++A+++  EM + G +P + TYN ++ G
Sbjct: 402 HTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDG 461

Query: 252 YFRAGQIEEAWRFFLEMK---------------KRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           ++R G++EEA   F +M+                + C  D  +   +VH     G++ +A
Sbjct: 462 FYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVC--DSESLRKLVHDMCQSGQVLKA 519

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
             +   +++ GV+P V TYN +I  LCK  +++ A+ +F+E+  KG  P+  TY  +I G
Sbjct: 520 YKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDG 579

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           L        A+     +      P++  YN ++R  C   ++ + + L+
Sbjct: 580 LLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLW 628



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 94/407 (23%), Positives = 163/407 (40%), Gaps = 92/407 (22%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN- 194
           P  K + ++     +AGK D AV++  SM + GC     ++N  L  LCK  +V +A+  
Sbjct: 240 PNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQR 299

Query: 195 LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           L  +  G F   +  Y+ + +G    +R ++     K M++R ++P++  Y I+++G   
Sbjct: 300 LVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAE 359

Query: 255 AGQIEEAWRFFLEMKKRK---------------CE--------------------IDVVT 279
           AG+IE+A  F   MKK+                C+                    +D  T
Sbjct: 360 AGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTT 419

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM- 338
            T ++ G    G +  A  +FD M   G  P+V TYNA+I    ++  +E A ++F +M 
Sbjct: 420 QTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKME 479

Query: 339 -----------------------------------------------VGKGYMPNSTTYN 351
                                                          +  G +P+  TYN
Sbjct: 480 MGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYN 539

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
            +I GLC    ++ A+     ++     P+  TY  LI     A      + LF+ +   
Sbjct: 540 TLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQS 599

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
              P+L  YN ++ S+   KK   L  A  L ++     ++P+K+ F
Sbjct: 600 GSSPSLSIYNSMMRSLCRMKK---LSQAINLWLD-----YLPKKYNF 638



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/394 (24%), Positives = 157/394 (39%), Gaps = 74/394 (18%)

Query: 108 HAIDLAARLRDY--RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           HA+ L  RL  +    ++  +   ++  L  +   FA +   + SAG+   AV+ F  M 
Sbjct: 105 HAVSLLLRLSSHADEAMFDALADARAAGLPASSSAFAALVAAHSSAGRHADAVQAFSRMD 164

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNK 225
           E   R +   +NTIL  L                             + +G  L+     
Sbjct: 165 EFQSRPTAFVYNTILKAL-----------------------------VDSGVILL----- 190

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
           AL +   MV  G  PN  TYN+++ G  + G   +A + F EM  R    +V  YT ++ 
Sbjct: 191 ALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLS 250

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI--LV--------- 334
                G+I  A  +   M + G LP   TYNA +  LCK   V  A   LV         
Sbjct: 251 SLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFAL 310

Query: 335 ------------------------FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
                                   ++ M+ +   P+   Y ++IRG    G +E AL F+
Sbjct: 311 GLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFL 370

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
             MK     P+   YN +++  CD G++ER   L  +M     + +  T  I+I  +  R
Sbjct: 371 DVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKR 430

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
              D+   A ++  EM + G  P   T+N +++G
Sbjct: 431 GLVDE---AMQIFDEMGEHGCDPTVMTYNALIDG 461



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 122/264 (46%), Gaps = 3/264 (1%)

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
           + L +    GL  + + +  ++  +  AG+  +A + F  M + +       Y TI+   
Sbjct: 123 DALADARAAGLPASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKAL 182

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
              G I  A  +++ MV  G  P+ ATYN ++  LCK+    +A+ +F+EM+ +G MPN 
Sbjct: 183 VDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNV 242

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
             Y V++  LC+ G+++ A++ +G MKD  C P+  TYN  +   C  G +    +    
Sbjct: 243 KIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVM 302

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467
           +  G     L  Y+ LI  +F  ++ D+     K ++E   R   P    +  ++ G   
Sbjct: 303 LQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLE---RNISPDVVLYTIMIRGCAE 359

Query: 468 IGNQGLAKEILRLQSRCGRLPRQF 491
            G    A   L +  + G +P  F
Sbjct: 360 AGRIEDALSFLDVMKKKGFVPDTF 383



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 106/244 (43%), Gaps = 3/244 (1%)

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
           R   A++    M +    P    YN +LK    +G I  A   +  M    C  +  TY 
Sbjct: 152 RHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCAPNRATYN 211

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
            ++ G    G    A  +FD M++ G++P+V  Y  ++  LC    ++ A+ +   M  K
Sbjct: 212 VLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDK 271

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
           G +P+  TYN  + GLC  G +  A + +  ++D      ++ Y+ LI     A   + G
Sbjct: 272 GCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEG 331

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
              ++ M      P++  Y I+I       + +D L     L  M  +GF+P  F +N V
Sbjct: 332 FGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDAL---SFLDVMKKKGFVPDTFCYNTV 388

Query: 462 LNGL 465
           L  L
Sbjct: 389 LKVL 392



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 113/227 (49%), Gaps = 16/227 (7%)

Query: 131 SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190
           +L L  T +T  I        G  D A++IF  M EHGC  ++ ++N ++D   +E ++E
Sbjct: 412 NLVLDSTTQTIMICG--LCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLE 469

Query: 191 KAYNLF-KVFRGKFKA-------------DVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
           +A  LF K+  G   +             D  S   + +  C   +  KA ++L+ ++D 
Sbjct: 470 EARMLFHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDS 529

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           G+ P++ TYN ++ G  +A  ++ A R F E++ +    D +TY T++ G         A
Sbjct: 530 GVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDA 589

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
             +F  ++  G  PS++ YN+M++ LC+   +  AI ++ + + K Y
Sbjct: 590 MMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKKY 636



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 56/283 (19%), Positives = 113/283 (39%), Gaps = 41/283 (14%)

Query: 132 LSLGPTQ----KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           L+LG  Q    ++   +      +G+  +A K+  S+ + G    + ++NT+++ LCK +
Sbjct: 490 LTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKAR 549

Query: 188 KVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
            ++ A  LFK  + K    D I+Y  + +G     R N A+ + + ++  G +P+L+ YN
Sbjct: 550 NLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYN 609

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT--------------------------- 279
            +++   R  ++ +A   +L+   +K    V +                           
Sbjct: 610 SMMRSLCRMKKLSQAINLWLDYLPKKYNFPVESEVLANAHKEIEDGSLDDGVRELIKIDQ 669

Query: 280 ---------YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
                    YT  + G   V     A  +F  +   G+  + A    +I  LC   ++  
Sbjct: 670 EYGYISSNPYTIWLIGLCQVRRTDDALRIFHTLQEFGIDITPACCALLINYLCWDRNLNA 729

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           A+ +    + K  + +    N ++R LC     + A     RM
Sbjct: 730 AVDIMLYALSKSIILSQPVGNRLLRWLCICYRRQDAQALAWRM 772


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 182/352 (51%), Gaps = 4/352 (1%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M+ L   P   ++  I   Y S G  + A +I  +M   G      ++ +++  +CKE +
Sbjct: 199 MEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGR 258

Query: 189 VEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           +E+A  LF K+       + ++YN + +G+C      +A     EMV +G+ P+++TYN+
Sbjct: 259 LEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNL 318

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++   F  G++ EA     EM+K+    D +TY  +++G+   G  KRA ++ + M++ G
Sbjct: 319 LVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKG 378

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           + P+  TY ++I VL +++ ++ A  +FE+++ +G  P+   +N +I G C  G +ERA 
Sbjct: 379 IEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAF 438

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
             +  M      P+  T+N L++  C  G++E    L ++M      P+  +YN LIS  
Sbjct: 439 MLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGY 498

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
             R    D+  A  +  EM+  GF P   T+N ++  L       LA+E+L+
Sbjct: 499 GRRG---DIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLK 547



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/376 (28%), Positives = 194/376 (51%), Gaps = 15/376 (3%)

Query: 91  NILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVS 150
           N++SY+ T  H  SS  + I+ A R+ D          M+   + P   T+  +      
Sbjct: 207 NVVSYN-TIIHGYSSRGN-IEGARRILD---------AMRVKGIEPDSYTYGSLISGMCK 255

Query: 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVIS 209
            G+ + A  +F  M E G   +  ++NT++D  C +  +E+A++   ++ +      V +
Sbjct: 256 EGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVST 315

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           YN++ +   +  R  +A +++KEM  +G+ P+  TYNI++ GY R G  + A+    EM 
Sbjct: 316 YNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEML 375

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
            +  E   VTYT++++       +K A ++F+ +++ GV P V  +NAMI   C   +VE
Sbjct: 376 SKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVE 435

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
            A ++ +EM  K   P+  T+N +++G C  G++E A   +  MK    +P+  +YN LI
Sbjct: 436 RAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLI 495

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
             +   G+I+    + ++M S    P L TYN LI  +   ++ D   +A +LL EMV++
Sbjct: 496 SGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGD---LAEELLKEMVNK 552

Query: 450 GFMPRKFTFNRVLNGL 465
           G  P   T+  ++ G+
Sbjct: 553 GISPDDSTYLSLIEGM 568



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 85/265 (32%), Positives = 131/265 (49%), Gaps = 3/265 (1%)

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
           L  +  KA E +  M   G  PN+ +YN ++ GY   G IE A R    M+ +  E D  
Sbjct: 185 LEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSY 244

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TY +++ G    G ++ A  +FD MV  G++P+  TYN +I   C K  +E A    +EM
Sbjct: 245 TYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEM 304

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
           V KG MP+ +TYN+++  L   G M  A + +  M+     P+  TYNILI  +   G  
Sbjct: 305 VKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNA 364

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           +R  +L  +M S    P   TY  LI   +V  + + +  A  L  +++D+G  P    F
Sbjct: 365 KRAFDLHNEMLSKGIEPTHVTYTSLI---YVLSRRNRMKEADDLFEKILDQGVSPDVIMF 421

Query: 459 NRVLNGLLLIGNQGLAKEILRLQSR 483
           N +++G    GN   A  +L+   R
Sbjct: 422 NAMIDGHCANGNVERAFMLLKEMDR 446



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 117/257 (45%), Gaps = 39/257 (15%)

Query: 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH 167
           HA+ +  R+ +      ++  M+   + P   T+ I+   Y   G A RA  +   M   
Sbjct: 321 HALFMEGRMGE---ADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSK 377

Query: 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKA 226
           G   +  ++ +++ +L +  ++++A +LF K+       DVI +N + +G C      +A
Sbjct: 378 GIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERA 437

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
             +LKEM  + + P+  T+N +++G  R G++EEA     EMK R  + D ++Y T++ G
Sbjct: 438 FMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISG 497

Query: 287 FGVVGEIKRARNVFDGM-----------------------------------VNGGVLPS 311
           +G  G+IK A  V D M                                   VN G+ P 
Sbjct: 498 YGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPD 557

Query: 312 VATYNAMIQVLCKKDSV 328
            +TY ++I+ +   D++
Sbjct: 558 DSTYLSLIEGMGNVDTL 574



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 74/151 (49%), Gaps = 3/151 (1%)

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M G G+ PN  +YN +I G    G +E A   +  M+    EP+  TY  LI   C  G 
Sbjct: 199 MEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGR 258

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           +E    LF+KM     +PN  TYN LI   +  K   DL  A     EMV +G MP   T
Sbjct: 259 LEEASGLFDKMVEIGLVPNAVTYNTLIDG-YCNKG--DLERAFSYRDEMVKKGIMPSVST 315

Query: 458 FNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           +N +++ L + G  G A ++++   + G +P
Sbjct: 316 YNLLVHALFMEGRMGEADDMIKEMRKKGIIP 346


>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
 gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
          Length = 385

 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 171/327 (52%), Gaps = 8/327 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           PT  T+  +      A +A  A  +   M   GC   + ++ T++   CK KK + A  +
Sbjct: 52  PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 111

Query: 196 FK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG-LNPNLTTYNIVLKGY 252
           F+  V RG F+ DV++Y+ + +G C   R  +A+++   M+  G   PN  TYN ++ G+
Sbjct: 112 FEQLVARG-FRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGF 170

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
            R G+++EA      M +     DVVTYTT+++GF  +  +  A ++ + M   G+ P+V
Sbjct: 171 CRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNV 230

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            T+ +++  LC+++ + +A+ +  EM  K   P   TYN ++ G C   ++E A +F+  
Sbjct: 231 VTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKFM-- 288

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           +++ +C PNV ++NI+IR  C        +EL E+     C P++  Y  +I  +   KK
Sbjct: 289 LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDVLCREKK 348

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFN 459
            D+     + ++E  + G +P   T++
Sbjct: 349 VDEACRVYRKMLE--EPGCLPNSITYS 373



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 122/246 (49%), Gaps = 4/246 (1%)

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           P   TYN ++ G  +A +  EA+    EM    C  D+ TYTT++ GF    +   A  V
Sbjct: 52  PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 111

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY-MPNSTTYNVVIRGLC 358
           F+ +V  G  P V TY+ +I  LCK+  ++ AI +F  M+  G  MPN+ TYN +I G C
Sbjct: 112 FEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFC 171

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLD 418
             G+M+ A+  + RM +    P+V TY  L+  FC    ++   +L  +M      PN+ 
Sbjct: 172 RMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVV 231

Query: 419 TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           T+  L+  +    +  D   A  +L EM  +   P  +T+N +L+G   +     A++ +
Sbjct: 232 TFTSLMDGLCRENRLSD---AVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKFM 288

Query: 479 RLQSRC 484
             +  C
Sbjct: 289 LEEMDC 294



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 122/247 (49%), Gaps = 16/247 (6%)

Query: 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH 167
            AIDL  R+            +KS S  P   T+  +   +   GK D A+ +   M E 
Sbjct: 142 EAIDLFGRM------------IKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAET 189

Query: 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKA 226
           G    + ++ T+++  CK  +++ AY+L  ++ R     +V+++  + +G C   R + A
Sbjct: 190 GSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDA 249

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
           + +L EM  +  +P + TYN +L GY R  Q+EEA +F LE  +  C  +VV++  ++ G
Sbjct: 250 VHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKFMLE--EMDCPPNVVSFNIMIRG 307

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK-GYMP 345
              V     A  + +        P V  Y  +I VLC++  V+ A  V+ +M+ + G +P
Sbjct: 308 LCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDVLCREKKVDEACRVYRKMLEEPGCLP 367

Query: 346 NSTTYNV 352
           NS TY+ 
Sbjct: 368 NSITYST 374



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 91/181 (50%), Gaps = 4/181 (2%)

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
           +P+  TYN++I  LCK +    A  + EEMV  G +P+  TY  +I G C + + + AL 
Sbjct: 51  VPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALR 110

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISSM 427
              ++      P+V TY+ LI   C  G ++  ++LF +M  SG C+PN  TYN LIS  
Sbjct: 111 VFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGF 170

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
               K D+   A  LL  M + G  P   T+  ++NG   +     A ++L   +R G  
Sbjct: 171 CRMGKMDE---AMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLT 227

Query: 488 P 488
           P
Sbjct: 228 P 228



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 14/134 (10%)

Query: 358 CHT-GEMERALE-FVGR------MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
           CH  G   RAL+ + GR      ++D E  P   TYN LI   C A       +L E+M 
Sbjct: 22  CHVHGSHRRALQRWPGRRGCGAAVQDAEEVPTAVTYNSLISGLCKAERASEAYDLLEEMV 81

Query: 410 SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
              C+P++ TY  LI+     KKSDD L   ++  ++V RGF P   T++ +++GL    
Sbjct: 82  YSGCIPDIFTYTTLITGFCKSKKSDDAL---RVFEQLVARGFRPDVVTYSCLIDGLC--- 135

Query: 470 NQGLAKEILRLQSR 483
            +G  KE + L  R
Sbjct: 136 KEGRLKEAIDLFGR 149


>gi|125604707|gb|EAZ43743.1| hypothetical protein OsJ_28367 [Oryza sativa Japonica Group]
          Length = 812

 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 173/353 (49%), Gaps = 11/353 (3%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            L +RM +    P + T+ ++ +     G A  A+K+F  M + G   ++  +  +L  L
Sbjct: 193 ALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSL 252

Query: 184 CKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           C   K+++A  L    + K    D ++YN   +G C V R N+A + L  + D G    L
Sbjct: 253 CNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGL 312

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
             Y+ ++ G F+A + +E + ++  M +R    DVV YT ++ G    G I+ A +  D 
Sbjct: 313 KGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDV 372

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M   G +P    YN +++VLC    +E A  +  EM+    + +STT  ++I GLC  G 
Sbjct: 373 MKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGL 432

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG----VCLPNLD 418
           ++ A++    M +  C+P V TYN LI  F   G +E    LF KM  G    + L    
Sbjct: 433 VDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTL 492

Query: 419 TYNILISSMFVRK------KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
             N +  S  +RK      +S  +L A KLL  ++D G +P   T+N ++NGL
Sbjct: 493 GANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGL 545



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 137/289 (47%), Gaps = 18/289 (6%)

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
           ++ P    + I+      AG+ + A+     M + G       +NT+L +LC    +E+A
Sbjct: 342 NISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERA 401

Query: 193 YNL-FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
           + L  ++ +     D  +  ++  G C     ++A+++  EM + G +P + TYN ++ G
Sbjct: 402 HTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDG 461

Query: 252 YFRAGQIEEAWRFFLEMK---------------KRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           ++R G++EEA   F +M+                + C  D  +   +VH     G++ +A
Sbjct: 462 FYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVC--DSESLRKLVHDMCQSGQVLKA 519

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
             +   +++ GV+P V TYN +I  LCK  +++ A+ +F+E+  KG  P+  TY  +I G
Sbjct: 520 YKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDG 579

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           L        A+     +      P++  YN ++R  C   ++ + + L+
Sbjct: 580 LLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLW 628



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 94/407 (23%), Positives = 163/407 (40%), Gaps = 92/407 (22%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN- 194
           P  K + ++     +AGK D AV++  SM + GC     ++N  L  LCK  +V +A+  
Sbjct: 240 PNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQR 299

Query: 195 LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           L  +  G F   +  Y+ + +G    +R ++     K M++R ++P++  Y I+++G   
Sbjct: 300 LVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAE 359

Query: 255 AGQIEEAWRFFLEMKKRK---------------CE--------------------IDVVT 279
           AG+IE+A  F   MKK+                C+                    +D  T
Sbjct: 360 AGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTT 419

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM- 338
            T ++ G    G +  A  +FD M   G  P+V TYNA+I    ++  +E A ++F +M 
Sbjct: 420 QTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKME 479

Query: 339 -----------------------------------------------VGKGYMPNSTTYN 351
                                                          +  G +P+  TYN
Sbjct: 480 MGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYN 539

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
            +I GLC    ++ A+     ++     P+  TY  LI     A      + LF+ +   
Sbjct: 540 TLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQS 599

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
              P+L  YN ++ S+   KK   L  A  L ++     ++P+K+ F
Sbjct: 600 GSSPSLSIYNSMMRSLCRMKK---LSQAINLWLD-----YLPKKYNF 638



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 98/394 (24%), Positives = 157/394 (39%), Gaps = 74/394 (18%)

Query: 108 HAIDLAARLRDY--RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           HA+ L  RL  +    ++  +   ++  L  +   FA +   + SAG+   AV+ F  M 
Sbjct: 105 HAVSLLLRLSSHADEAMFDALADARAAGLPASSSAFAALVAAHSSAGRNADAVQAFSRMD 164

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNK 225
           E   R +   +NTIL  L                             + +G  L+     
Sbjct: 165 EFQSRPTAFVYNTILKAL-----------------------------VDSGVILL----- 190

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
           AL +   MV  G  PN  TYN+++ G  + G   +A + F EM  R    +V  YT ++ 
Sbjct: 191 ALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLS 250

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI--LV--------- 334
                G+I  A  +   M + G LP   TYNA +  LCK   V  A   LV         
Sbjct: 251 SLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFAL 310

Query: 335 ------------------------FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
                                   ++ M+ +   P+   Y ++IRG    G +E AL F+
Sbjct: 311 GLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFL 370

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
             MK     P+   YN +++  CD G++ER   L  +M     + +  T  I+I  +  R
Sbjct: 371 DVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKR 430

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
              D+   A ++  EM + G  P   T+N +++G
Sbjct: 431 GLVDE---AMQIFDEMGEHGCDPTVMTYNALIDG 461



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 122/264 (46%), Gaps = 3/264 (1%)

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
           + L +    GL  + + +  ++  +  AG+  +A + F  M + +       Y TI+   
Sbjct: 123 DALADARAAGLPASSSAFAALVAAHSSAGRNADAVQAFSRMDEFQSRPTAFVYNTILKAL 182

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
              G I  A  +++ MV  G  P+ ATYN ++  LCK+    +A+ +F+EM+ +G MPN 
Sbjct: 183 VDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNV 242

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
             Y V++  LC+ G+++ A++ +G MKD  C P+  TYN  +   C  G +    +    
Sbjct: 243 KIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVM 302

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467
           +  G     L  Y+ LI  +F  ++ D+     K ++E   R   P    +  ++ G   
Sbjct: 303 LQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLE---RNISPDVVLYTIMIRGCAE 359

Query: 468 IGNQGLAKEILRLQSRCGRLPRQF 491
            G    A   L +  + G +P  F
Sbjct: 360 AGRIEDALSFLDVMKKKGFVPDTF 383



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 106/244 (43%), Gaps = 3/244 (1%)

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
           R   A++    M +    P    YN +LK    +G I  A   +  M    C  +  TY 
Sbjct: 152 RNADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCAPNRATYN 211

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
            ++ G    G    A  +FD M++ G++P+V  Y  ++  LC    ++ A+ +   M  K
Sbjct: 212 VLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDK 271

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
           G +P+  TYN  + GLC  G +  A + +  ++D      ++ Y+ LI     A   + G
Sbjct: 272 GCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEG 331

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
              ++ M      P++  Y I+I       + +D L     L  M  +GF+P  F +N V
Sbjct: 332 FGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDAL---SFLDVMKKKGFVPDTFCYNTV 388

Query: 462 LNGL 465
           L  L
Sbjct: 389 LKVL 392



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 113/227 (49%), Gaps = 16/227 (7%)

Query: 131 SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190
           +L L  T +T  I        G  D A++IF  M EHGC  ++ ++N ++D   +E ++E
Sbjct: 412 NLVLDSTTQTIMICG--LCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLE 469

Query: 191 KAYNLF-KVFRGKFKA-------------DVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
           +A  LF K+  G   +             D  S   + +  C   +  KA ++L+ ++D 
Sbjct: 470 EARMLFHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDS 529

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           G+ P++ TYN ++ G  +A  ++ A R F E++ +    D +TY T++ G         A
Sbjct: 530 GVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDA 589

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
             +F  ++  G  PS++ YN+M++ LC+   +  AI ++ + + K Y
Sbjct: 590 MMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKKY 636



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 56/283 (19%), Positives = 113/283 (39%), Gaps = 41/283 (14%)

Query: 132 LSLGPTQ----KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           L+LG  Q    ++   +      +G+  +A K+  S+ + G    + ++NT+++ LCK +
Sbjct: 490 LTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKAR 549

Query: 188 KVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
            ++ A  LFK  + K    D I+Y  + +G     R N A+ + + ++  G +P+L+ YN
Sbjct: 550 NLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYN 609

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT--------------------------- 279
            +++   R  ++ +A   +L+   +K    V +                           
Sbjct: 610 SMMRSLCRMKKLSQAINLWLDYLPKKYNFPVESEVLANAHKEIEDGSLDDGVRELIKIDQ 669

Query: 280 ---------YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
                    YT  + G   V     A  +F  +   G+  + A    +I  LC   ++  
Sbjct: 670 EYGYISSNPYTIWLIGLCQVRRTDDALRIFHTLQEFGIDITPACCALLINYLCWDRNLNA 729

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           A+ +    + K  + +    N ++R LC     + A     RM
Sbjct: 730 AVDIMLYALSKSIILSQPVGNRLLRWLCICYRRQDAQALAWRM 772


>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
 gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 113/398 (28%), Positives = 193/398 (48%), Gaps = 39/398 (9%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           RL   +    ++  M   +L PT  T+ ++   + + GK D A +I   M +      + 
Sbjct: 295 RLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVV 354

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           ++NT++D   + +   + Y+L +    K  K + ++YN+I    C      +A   L +M
Sbjct: 355 TYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKM 414

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH-------- 285
            + GL+P+  TYN ++  Y +AG++ +A+R   EM  +  +ID  T  TI+H        
Sbjct: 415 EENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKL 474

Query: 286 ----------------------GFGVVGEIK-----RARNVFDGMVNGGVLPSVATYNAM 318
                                 G  ++G  K     RA N++D M    ++PS  TYN++
Sbjct: 475 DEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSV 534

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           I  LC+   V+ AI    EM+  G +P+ TTYN++I G C  G +E+A +F   M ++  
Sbjct: 535 IGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLF 594

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
           +P+V T NIL+R  C  G +E+ L+LF  + S     ++ TYN +ISS+    K ++   
Sbjct: 595 KPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFEN--- 651

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKE 476
           A  LL EM  +   P ++T+  ++  L   G    A+E
Sbjct: 652 AYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEE 689



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 174/367 (47%), Gaps = 27/367 (7%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           T + +M+   L P   T+  +   Y  AGK  +A ++   M   G +    + NTIL  L
Sbjct: 409 TTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCL 468

Query: 184 CKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           C EKK+++AYNL     +  +  D +SY ++  G+   ++ ++AL +  EM +R + P+ 
Sbjct: 469 CVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIMPST 528

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TYN V+ G  ++ ++++A     EM +     D  TY  I+HGF + G +++A    + 
Sbjct: 529 ITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNE 588

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M+     P V T N +++ LC++  +E A+ +F  +V KG   +  TYN +I  LC  G+
Sbjct: 589 MIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGK 648

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-------------- 408
            E A + +  M+  +  P+  TY ++I    DAG I+   E   KM              
Sbjct: 649 FENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEEFTLKMVESGIVHDQNLKLG 708

Query: 409 -GSGVCLPNLD--------TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
            G  V    +          Y+  I+ +  + K  D   A  L +E+   G    K+T+ 
Sbjct: 709 KGQNVLTSEVSEHFDFKSIAYSDQINELCNQHKYKD---AMHLFVEVTKEGVALNKYTYL 765

Query: 460 RVLNGLL 466
            ++ GL+
Sbjct: 766 NLMEGLI 772



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 190/418 (45%), Gaps = 41/418 (9%)

Query: 88  HFFNILSYHPTY---AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGP---TQKTF 141
           H  + L  HPT      S    D +I    ++        + ++MK L+  P   T  T 
Sbjct: 122 HELHKLILHPTRDLPEPSKELLDTSIGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNTL 181

Query: 142 AIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFR 200
                RY S+     A ++     + G   + NSFN ++   C E KV+ A + + K+  
Sbjct: 182 MNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNKMSE 241

Query: 201 GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
                D +SYN I +     +   +A ++L +M  +GL+PN  TYN+++ GY R G ++E
Sbjct: 242 FGCVPDTVSYNTILDALLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKE 301

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
           A +    M +      V TY  +V+GF   G+I  A  + D M    VLP V TYN +I 
Sbjct: 302 ATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLID 361

Query: 321 VLCK-KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
              + +DS E   L+ EEM  KG   N+ TYN++++ +C  G M  A   + +M+++   
Sbjct: 362 GCSQWRDSSEVYSLI-EEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLS 420

Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD---- 435
           P+  TYN LI  +C AG++ +   + ++M S     +  T N ++  + V KK D+    
Sbjct: 421 PDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNL 480

Query: 436 -----------------LLVAG-----------KLLIEMVDRGFMPRKFTFNRVLNGL 465
                            +L+ G            L  EM +R  MP   T+N V+ GL
Sbjct: 481 LCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGL 538



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 6/182 (3%)

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           PS    +  I    + D    A  +F +M    Y PN  T N ++  L         L  
Sbjct: 138 PSKELLDTSIGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLA 197

Query: 370 VGRMKDD---ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
              +KD       PN  ++NILI  +C   +++  L+   KM    C+P+  +YN ++ +
Sbjct: 198 RQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILDA 257

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGR 486
           +  R+    L  A  LL++M  +G  P K T+N ++ G   +G    A +++ + +R   
Sbjct: 258 LLKRRL---LQEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNL 314

Query: 487 LP 488
           LP
Sbjct: 315 LP 316


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 101/392 (25%), Positives = 183/392 (46%), Gaps = 8/392 (2%)

Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           A S  +++  +D   +L        L+ +M      P  +T+ I+   +  A + D A++
Sbjct: 261 ATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALE 320

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCL 219
           +F  +  +GC+ +  ++ TI+  L   +++E+A   F         DVISY  +  G   
Sbjct: 321 LFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDE-----ALDVISYTTVIKGLAD 375

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
            KR ++A E+ +++   G +PN+  Y  V+ G  +AG+IE+  + F +M    C     T
Sbjct: 376 SKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTT 435

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           YT ++ G      +  A  VF+ MV  G +P   TY  +I    K   ++ A  + + M+
Sbjct: 436 YTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVML 495

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            KG  P + TY  ++ G C    +  A E + +M++  CEP +  +  L+ Y+   G  E
Sbjct: 496 TKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAE 555

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
              ++  +M +  C P++  Y  LI  +F   +  +   A  +   M+++G  P   T+ 
Sbjct: 556 EAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPE---ARHVFDSMIEKGCAPDALTYG 612

Query: 460 RVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
            ++     IGN   A EIL L ++ G  P  F
Sbjct: 613 TIIQNFSKIGNVEAAGEILELMAKSGVGPDCF 644



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 105/362 (29%), Positives = 171/362 (47%), Gaps = 5/362 (1%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M   S  PT+ T+ ++ +    A     A K+F  M + GC     ++ T++D   K  K
Sbjct: 424 MSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASK 483

Query: 189 VEKAYNLFKVFRGKF-KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           +++A  L  V   K  +   ++Y  I +G+C +   N+A EV+ +M +RG  P L  +  
Sbjct: 484 MDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTS 543

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           +L  Y   G+ EEA++   EM  R C  DV+ YT+++      G +  AR+VFD M+  G
Sbjct: 544 LLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKG 603

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
             P   TY  +IQ   K  +VE A  + E M   G  P+   YN ++ G      +++A 
Sbjct: 604 CAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAF 663

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISS 426
               RM     +PN  T+N+L+      G+ +R   LF++M       P L +Y ILI  
Sbjct: 664 GVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDG 723

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGR 486
           +    K+  +  A     EM+DRG +P   T+  ++  L   G    AK+++    + G 
Sbjct: 724 L---GKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGV 780

Query: 487 LP 488
            P
Sbjct: 781 NP 782



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 106/383 (27%), Positives = 180/383 (46%), Gaps = 10/383 (2%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID   +L      + L  RM+         TF  + E   + GK D A +++  M E G 
Sbjct: 166 IDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGY 225

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALE 228
              L   ++++  LCK  KV++A  +++ V   K     ++YN + +G+C + R +  L+
Sbjct: 226 EPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLK 285

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           +L +MV+    P++ TYNI++ G+ RA ++++A   F  +    C+ +  TYTTI+ G  
Sbjct: 286 LLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLY 345

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
               ++ A+  FD  ++      V +Y  +I+ L     ++ A  +FE++   G  PN  
Sbjct: 346 DAQRMEEAKAFFDEALD------VISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVV 399

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            Y  VI GL   G +E  L+    M    C P   TY ++I   C A  +    ++FE+M
Sbjct: 400 AYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQM 459

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
               C+P+  TY  LI       K D+   A KLL  M+ +G  P   T+  +++G   +
Sbjct: 460 VQKGCVPDTITYTTLIDGFSKASKMDE---ARKLLDVMLTKGPEPTAVTYGSIVHGFCKL 516

Query: 469 GNQGLAKEILRLQSRCGRLPRQF 491
                AKE++      G  P  F
Sbjct: 517 DMINEAKEVIAQMRERGCEPGLF 539



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 159/321 (49%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           + R       L   M S+   PT  ++  +     S  K D A K F SM ++GC   + 
Sbjct: 32  KARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVI 91

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           +F T++   CK  + +  + L      +F+ DV  Y  + +G+C     +   ++L+EM+
Sbjct: 92  AFTTLIHGFCKAGQPQVGHMLLNQALKRFRPDVFLYTSVIHGYCKAGDLDTGFKILEEML 151

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
             G  P+   Y +++    + G+++EA+  F  M+K  C  D VT+ T++      G++ 
Sbjct: 152 AAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLD 211

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
            A  ++  M+  G  P +   +++I  LCK   V+ A  +++ +V K    +   YN ++
Sbjct: 212 EACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLM 271

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
            G C  G ++  L+ + +M + +  P++QTYNIL+  F  A  ++  LELF+ + S  C 
Sbjct: 272 DGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCK 331

Query: 415 PNLDTYNILISSMFVRKKSDD 435
           PN  TY  +I  ++  ++ ++
Sbjct: 332 PNAATYTTIIQGLYDAQRMEE 352



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 158/341 (46%), Gaps = 5/341 (1%)

Query: 126 VHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185
           +  M +  L P      I+      A K D+A+++FL M   GC  ++ S+NT++  L  
Sbjct: 8   LKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLAS 67

Query: 186 EKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
             K+++AY  F  +     + DVI++  + +G+C   +      +L + + R   P++  
Sbjct: 68  IDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKR-FRPDVFL 126

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           Y  V+ GY +AG ++  ++   EM    C  D   Y  ++     +G +  A  +F+ M 
Sbjct: 127 YTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMR 186

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
             G L    T+  +I+ L     ++ A  ++ EM+ +GY P     + +I  LC  G+++
Sbjct: 187 KSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVD 246

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
            A E    +   +   +   YN L+  +C  G ++ GL+L  +M      P++ TYNIL+
Sbjct: 247 EANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILV 306

Query: 425 SSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           +      + DD L   KLL      G  P   T+  ++ GL
Sbjct: 307 AGFSRANRLDDALELFKLL---SSYGCKPNAATYTTIIQGL 344



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 162/335 (48%), Gaps = 5/335 (1%)

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVI 213
           + A+     MH  G    + + N +L+ LCK +K++KA  LF ++     +  ++SYN +
Sbjct: 2   EEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTV 61

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
            +G   + + ++A +    M+D G  P++  +  ++ G+ +AGQ  +     L    ++ 
Sbjct: 62  ISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQ-PQVGHMLLNQALKRF 120

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
             DV  YT+++HG+   G++     + + M+  G +P  A Y  +I  LCK   V+ A  
Sbjct: 121 RPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYE 180

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           +FE M   G + +  T+  +I  L + G+++ A E    M +   EP ++  + LI   C
Sbjct: 181 LFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALC 240

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
            AG+++   E+++ + +     +   YN L+       + DD L   KLL++MV+    P
Sbjct: 241 KAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGL---KLLLQMVECDNFP 297

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
              T+N ++ G         A E+ +L S  G  P
Sbjct: 298 DIQTYNILVAGFSRANRLDDALELFKLLSSYGCKP 332



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 139/284 (48%), Gaps = 5/284 (1%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           + ++  M +    P    +  + +   S G+   A  +F SM E GC     ++ TI+  
Sbjct: 558 YQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQN 617

Query: 183 LCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
             K   VE A  + ++  +     D  +YN + +G+  ++R ++A  V   MV  G+ PN
Sbjct: 618 FSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPN 677

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEM-KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
             T+N+++ G F+ G+ + A+  F EM +K +    +V+YT ++ G G  G +  A + F
Sbjct: 678 AVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQF 737

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
             M++ G++P   TY ++I  L K   +  A  + E+MV  G  P+   Y+ +I GL  +
Sbjct: 738 QEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDS 797

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
             ++ A +    M    C PN  TY +L R F  AG   R L+L
Sbjct: 798 SMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAG---RALDL 838



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 145/301 (48%), Gaps = 2/301 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++ +M+     P    F  +   Y+S G+A+ A ++   M   GC   +  + +++DLL 
Sbjct: 525 VIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLF 584

Query: 185 KEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
              +V +A ++F     K  A D ++Y  I   +  +     A E+L+ M   G+ P+  
Sbjct: 585 STGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCF 644

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            YN ++ GY +  ++++A+  +  M     + + VT+  ++HG    G+  RA ++F  M
Sbjct: 645 AYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEM 704

Query: 304 VNGG-VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           +    V P++ +Y  +I  L K   V  A   F+EM+ +G +P   TY  +I  L   G 
Sbjct: 705 LEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGR 764

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           +  A + V  M      P+VQ Y+ LI    D+  ++   ++F++M    C PN  TY +
Sbjct: 765 IPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKV 824

Query: 423 L 423
           L
Sbjct: 825 L 825



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 103/256 (40%), Gaps = 37/256 (14%)

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           +EEA     EM       DVV    +++G     +I +A  +F  M + G  P++ +YN 
Sbjct: 1   MEEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNT 60

Query: 318 MIQVLCKKDSVENAILVFEEMVGKG----------------------------------Y 343
           +I  L   D ++ A   F  M+  G                                  +
Sbjct: 61  VISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRF 120

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+   Y  VI G C  G+++   + +  M    C P+   Y +LI   C  G ++   E
Sbjct: 121 RPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYE 180

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           LFE+M    CL +  T+  LI ++    K D+   A +L  EM++RG+ P     + ++ 
Sbjct: 181 LFERMRKSGCLGDYVTFMTLIEALSNHGKLDE---ACELYREMIERGYEPYLEVQDSLIF 237

Query: 464 GLLLIGNQGLAKEILR 479
            L   G    A EI +
Sbjct: 238 ALCKAGKVDEANEIYQ 253



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 91/195 (46%), Gaps = 4/195 (2%)

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           ++ A +    M   G++P V   N ++  LCK   ++ AI +F EM   G  P   +YN 
Sbjct: 1   MEEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNT 60

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           VI GL    +M+ A +F   M D+ CEP+V  +  LI  FC AG+ + G  L  +     
Sbjct: 61  VISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRF 120

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
             P++  Y  +I       K+ DL    K+L EM+  G +P    +  +++ L  +G   
Sbjct: 121 -RPDVFLYTSVIHGYC---KAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVD 176

Query: 473 LAKEILRLQSRCGRL 487
            A E+     + G L
Sbjct: 177 EAYELFERMRKSGCL 191



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 91/190 (47%), Gaps = 4/190 (2%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  +D   +L      + +  RM +  + P   TF ++       GK DRA  +F  M
Sbjct: 645 AYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEM 704

Query: 165 HEHG-CRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVK 221
            E      +L S+  ++D L K  +V +A++ F+  + RG    +  +Y  +        
Sbjct: 705 LEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRG-IIPECHTYTSLIYSLAKAG 763

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
           R  +A +++++MV  G+NP++  Y+ ++ G   +  ++ AW  F EM KR C  + VTY 
Sbjct: 764 RIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYK 823

Query: 282 TIVHGFGVVG 291
            +  GF   G
Sbjct: 824 VLRRGFRAAG 833


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 109/356 (30%), Positives = 169/356 (47%), Gaps = 4/356 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           LV RMK     P  +T+  +       GK + A+ ++  M + G   +  ++N +++ LC
Sbjct: 325 LVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELC 384

Query: 185 KEKKVEKAYNLFKVFRGKFK-ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
              +   A  +F    G    A+  +YN I  G CL     KA+ + ++M+  G  P + 
Sbjct: 385 VGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVV 444

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN ++ GY   G +  A R    MK+  CE D  TY  +V GF   G+++ A   F  M
Sbjct: 445 TYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEM 504

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           V  G+ P+  +Y A+I    K   V+ A+ + + M   G  PN  +YN VI GL      
Sbjct: 505 VECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRF 564

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             A +   +M +    PNV TY  LI   C  G  +   ++F  M    CLPNL TY+ L
Sbjct: 565 SEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSL 624

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           I  +    K+D+   A  LL EM  +G  P + TF  +++G +++G    A  +LR
Sbjct: 625 IYGLCQEGKADE---AEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLR 677



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 177/371 (47%), Gaps = 12/371 (3%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
           +RL        L H+M    L P   T+  +       G+   A+KIF  M  HG   + 
Sbjct: 349 SRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANT 408

Query: 174 NSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
            ++N I+  LC    +EKA  LF K+ +      V++YN + NG+      N A  +L  
Sbjct: 409 QTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDL 468

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M + G  P+  TYN ++ G+ + G++E A  +F EM +     + V+YT ++ G    G+
Sbjct: 469 MKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGK 528

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           +  A ++   M   G  P+V +YNA+I  L K++    A  + ++MV +G +PN  TY  
Sbjct: 529 VDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTT 588

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           +I GLC  G  + A +    M+  +C PN+ TY+ LI   C  G+ +    L ++M    
Sbjct: 589 LIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKG 648

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
             P+  T+  LI    V  + D   +   LL  MVD G  P   T++ +L        +G
Sbjct: 649 LAPDEVTFTSLIDGFVVLGRIDHAFL---LLRRMVDMGCKPNYRTYSVLL--------KG 697

Query: 473 LAKEILRLQSR 483
           L KE L L+ +
Sbjct: 698 LQKECLLLEEK 708



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 178/366 (48%), Gaps = 4/366 (1%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            L  +M +  + P+  TF  +       GK   A  I   + ++     + ++ +++   
Sbjct: 184 NLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGH 243

Query: 184 CKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           C+ + ++ A+ +F ++ +     + ++Y+ + NG C   R ++AL++L+EM+++G+ P +
Sbjct: 244 CRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTV 303

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TY + +         EEA      MKKR C  +V TYT ++ G   +G+++ A  ++  
Sbjct: 304 YTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHK 363

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M+  G++P+  TYNA+I  LC       A+ +F  M G G + N+ TYN +I+GLC  G+
Sbjct: 364 MLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGD 423

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           +E+A+    +M      P V TYN LI  +   G +     L + M    C P+  TYN 
Sbjct: 424 IEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNE 483

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           L+S      K   L  A     EMV+ G  P   ++  +++G    G   +A  +L+   
Sbjct: 484 LVSGF---SKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRME 540

Query: 483 RCGRLP 488
             G  P
Sbjct: 541 EMGCNP 546



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 176/362 (48%), Gaps = 4/362 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  I++ ++    R    ++ ++    L P   T+  +   +      D A  +F  M
Sbjct: 200 TFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRM 259

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
            + GC  +  +++T+++ LC E +V++A ++  ++     +  V +Y +     C ++  
Sbjct: 260 VKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHE 319

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A+E++  M  RG  PN+ TY  ++ G  R G++E A   + +M K     + VTY  +
Sbjct: 320 EEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNAL 379

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++   V G    A  +F  M   G L +  TYN +I+ LC    +E A+++FE+M+  G 
Sbjct: 380 INELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGP 439

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
           +P   TYN +I G    G +  A   +  MK++ CEP+  TYN L+  F   G++E    
Sbjct: 440 LPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASF 499

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
            F++M      PN  +Y  LI       K D   +A  LL  M + G  P   ++N V+N
Sbjct: 500 YFQEMVECGLNPNPVSYTALIDGHSKDGKVD---IALSLLKRMEEMGCNPNVESYNAVIN 556

Query: 464 GL 465
           GL
Sbjct: 557 GL 558



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 109/407 (26%), Positives = 183/407 (44%), Gaps = 19/407 (4%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
            + FF  +S  P Y H+ + F   ++   R R +                P      ++ 
Sbjct: 91  VIQFFYWISKRPFYKHNMNCFISMLNRLVRDRVF---------------APADHIRILMI 135

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFK 204
           +   +  +  R       +   G   SL S NT+L  L K + VE A NL+K +     +
Sbjct: 136 KACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQ 195

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
             ++++N + N      +  +A  +L ++    L+P++ TY  ++ G+ R   ++ A+  
Sbjct: 196 PSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGV 255

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
           F  M K  C+ + VTY+T+++G    G +  A ++ + M+  G+ P+V TY   I  LC 
Sbjct: 256 FDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCA 315

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
            +  E AI +   M  +G  PN  TY  +I GL   G++E A+    +M  +   PN  T
Sbjct: 316 IEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVT 375

Query: 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLI 444
           YN LI   C  G     L++F  M     L N  TYN +I  + +     D+  A  L  
Sbjct: 376 YNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCL---GGDIEKAMVLFE 432

Query: 445 EMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           +M+  G +P   T+N ++NG L  GN   A  +L L    G  P ++
Sbjct: 433 KMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEW 479



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 75/148 (50%), Gaps = 1/148 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S++  I+  ++   +     +  +M    L P   T+  + +     G+   A KIF  M
Sbjct: 550 SYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDM 609

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRT 223
            +  C  +L ++++++  LC+E K ++A  L K   R     D +++  + +G+ ++ R 
Sbjct: 610 EKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRI 669

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKG 251
           + A  +L+ MVD G  PN  TY+++LKG
Sbjct: 670 DHAFLLLRRMVDMGCKPNYRTYSVLLKG 697


>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 177/357 (49%), Gaps = 13/357 (3%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID A R+ D         RM+S    P   T+ I+     S GK D A+K+   +    C
Sbjct: 174 IDDATRVLD---------RMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNC 224

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
           + ++ ++  +++    E  V++A  L  ++     K D+ +YN I  G C     ++A E
Sbjct: 225 QPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFE 284

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           +++ +  +G  P++ +YNI+L+     G+ EE  +   +M   KC+ +VVTY+ ++    
Sbjct: 285 MVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLC 344

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G+I+ A N+   M   G+ P   +Y+ +I   C++  ++ AI   E M+  G +P+  
Sbjct: 345 RDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIV 404

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            YN V+  LC  G+ ++ALE  G++ +  C PN  +YN +      +G+  R L +  +M
Sbjct: 405 NYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEM 464

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            S    P+  TYN +IS +      D+   A +LL++M    F P   T+N VL G 
Sbjct: 465 MSNGIDPDEITYNSMISCLCREGMVDE---AFELLVDMRSCEFHPSVVTYNIVLLGF 518



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 171/338 (50%), Gaps = 4/338 (1%)

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKAD 206
           +    + D A ++   M          ++N ++  LC   K++ A  +  ++     +  
Sbjct: 168 FCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPT 227

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           VI+Y ++     L    ++AL+++ EM+ RGL P++ TYN +++G  + G ++ A+    
Sbjct: 228 VITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVR 287

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
            ++ +  E DV++Y  ++      G+ +    +   M +    P+V TY+ +I  LC+  
Sbjct: 288 NLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDG 347

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            +E A+ + + M  KG  P++ +Y+ +I   C  G ++ A+EF+  M  D C P++  YN
Sbjct: 348 KIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYN 407

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            ++   C  G+ ++ LE+F K+G   C PN  +YN + S+++    S D + A  +++EM
Sbjct: 408 TVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALW---SSGDKIRALHMILEM 464

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484
           +  G  P + T+N +++ L   G    A E+L     C
Sbjct: 465 MSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSC 502



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 167/356 (46%), Gaps = 37/356 (10%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           +++++ S +  PT  T+ I+ E  +  G  D A+K+   M   G +  + ++NTI+  +C
Sbjct: 215 VLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMC 274

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           KE  V++A+ + +    K  + DVISYN++        +  +  +++ +M     +PN+ 
Sbjct: 275 KEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVV 334

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY+I++    R G+IEEA      MK++    D  +Y  ++  F   G +  A    + M
Sbjct: 335 TYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETM 394

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFE--------------------------- 336
           ++ G LP +  YN ++  LCK    + A+ +F                            
Sbjct: 395 ISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDK 454

Query: 337 --------EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
                   EM+  G  P+  TYN +I  LC  G ++ A E +  M+  E  P+V TYNI+
Sbjct: 455 IRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIV 514

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM-FVRKKSDDLLVAGKLL 443
           +  FC A  IE  + + E M    C PN  TY +LI  + F   +++ + +A  L+
Sbjct: 515 LLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLV 570



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 173/355 (48%), Gaps = 17/355 (4%)

Query: 131 SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG-------CRQSLNSFNTILDLL 183
           S SLG        I  R   +G    ++ +  +M   G       C + +  F T+    
Sbjct: 82  SQSLGFRDTQMLKIFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTL---- 137

Query: 184 CKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
              + + KA  + ++     + DV +YN + NG+C + R + A  VL  M  +  +P+  
Sbjct: 138 ---RNIPKAVRVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTV 194

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYNI++      G+++ A +   ++    C+  V+TYT ++    + G +  A  + D M
Sbjct: 195 TYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEM 254

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           ++ G+ P + TYN +I+ +CK+  V+ A  +   +  KG  P+  +YN+++R L + G+ 
Sbjct: 255 LSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKW 314

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           E   + + +M  ++C+PNV TY+ILI   C  G+IE  + L + M      P+  +Y+ L
Sbjct: 315 EEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPL 374

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           I++ F R+   D  VA + L  M+  G +P    +N VL  L   G    A EI 
Sbjct: 375 IAA-FCREGRLD--VAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIF 426


>gi|15226583|ref|NP_179165.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216226|sp|Q9ZQF1.1|PP152_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g15630, mitochondrial; Flags: Precursor
 gi|4335729|gb|AAD17407.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251331|gb|AEC06425.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 627

 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 108/360 (30%), Positives = 171/360 (47%), Gaps = 5/360 (1%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M+   + PT  T+  + + +   G+ + A  I   M   G +  + ++N IL  +C E +
Sbjct: 251 MEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGR 310

Query: 189 VEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
             +     K        D +SYN++  G         A     EMV +G+ P   TYN +
Sbjct: 311 ASEVLREMKEI--GLVPDSVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTL 368

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           + G F   +IE A     E++++   +D VTY  +++G+   G+ K+A  + D M+  G+
Sbjct: 369 IHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGI 428

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
            P+  TY ++I VLC+K+    A  +FE++VGKG  P+    N ++ G C  G M+RA  
Sbjct: 429 QPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFS 488

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
            +  M      P+  TYN L+R  C  G+ E   EL  +M      P+  +YN LIS   
Sbjct: 489 LLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGY- 547

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
              K  D   A  +  EM+  GF P   T+N +L GL       LA+E+LR     G +P
Sbjct: 548 --SKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGIVP 605



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 159/326 (48%), Gaps = 7/326 (2%)

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVI 213
           D A++ F  M E G      + N IL LL +  ++E A+  +  ++R + K++V ++N++
Sbjct: 172 DEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIM 231

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
            N  C   +  KA   L  M   G+ P + TYN +++G+   G+IE A     EMK +  
Sbjct: 232 INVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGF 291

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
           + D+ TY  I+      G   RA  V   M   G++P   +YN +I+       +E A  
Sbjct: 292 QPDMQTYNPILSWMCNEG---RASEVLREMKEIGLVPDSVSYNILIRGCSNNGDLEMAFA 348

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
             +EMV +G +P   TYN +I GL    ++E A   +  +++     +  TYNILI  +C
Sbjct: 349 YRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYC 408

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
             G+ ++   L ++M +    P   TY  LI  +  + K+ +   A +L  ++V +G  P
Sbjct: 409 QHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTRE---ADELFEKVVGKGMKP 465

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILR 479
                N +++G   IGN   A  +L+
Sbjct: 466 DLVMMNTLMDGHCAIGNMDRAFSLLK 491



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 146/289 (50%), Gaps = 14/289 (4%)

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
            I ++++    C ++  ++A+E    M ++G  P   T N +L    R  +IE AW F+ 
Sbjct: 155 TILFDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYA 214

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           +M + + + +V T+  +++     G++K+A+     M   G+ P++ TYN ++Q    + 
Sbjct: 215 DMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRG 274

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            +E A L+  EM  KG+ P+  TYN ++  +C+ G   RA E +  MK+    P+  +YN
Sbjct: 275 RIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEG---RASEVLREMKEIGLVPDSVSYN 331

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLI-E 445
           ILIR   + G++E      ++M     +P   TYN LI  +F+  K    + A ++LI E
Sbjct: 332 ILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENK----IEAAEILIRE 387

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC---GRLPRQF 491
           + ++G +    T+N ++NG       G AK+   L       G  P QF
Sbjct: 388 IREKGIVLDSVTYNILINGYC---QHGDAKKAFALHDEMMTDGIQPTQF 433



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 120/221 (54%), Gaps = 1/221 (0%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           T+ I+   Y   G A +A  +   M   G + +  ++ +++ +LC++ K  +A  LF+  
Sbjct: 399 TYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKV 458

Query: 200 RGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
            GK  K D++  N + +G C +   ++A  +LKEM    +NP+  TYN +++G    G+ 
Sbjct: 459 VGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKF 518

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           EEA     EMK+R  + D ++Y T++ G+   G+ K A  V D M++ G  P++ TYNA+
Sbjct: 519 EEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNAL 578

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
           ++ L K    E A  +  EM  +G +PN +++  VI  + +
Sbjct: 579 LKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEAMSN 619



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 142/313 (45%), Gaps = 3/313 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++  MK + L P   ++ I+     + G  + A      M + G   +  ++NT++  L 
Sbjct: 314 VLREMKEIGLVPDSVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLF 373

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            E K+E A  L +  R K    D ++YN++ NG+C      KA  +  EM+  G+ P   
Sbjct: 374 MENKIEAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQF 433

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY  ++    R  +  EA   F ++  +  + D+V   T++ G   +G + RA ++   M
Sbjct: 434 TYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEM 493

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
               + P   TYN +++ LC +   E A  +  EM  +G  P+  +YN +I G    G+ 
Sbjct: 494 DMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDT 553

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A      M      P + TYN L++      E E   EL  +M S   +PN  ++  +
Sbjct: 554 KHAFMVRDEMLSLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSV 613

Query: 424 ISSM--FVRKKSD 434
           I +M     KKSD
Sbjct: 614 IEAMSNLDAKKSD 626


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 95/360 (26%), Positives = 178/360 (49%), Gaps = 5/360 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   + +       L   + + +L PT  ++  + +   ++G+     K+   M
Sbjct: 337 NYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEM 396

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRT 223
           H       + ++N ++D LCKE ++ +A   L  + +   K ++++YN + +G+CL    
Sbjct: 397 HGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNV 456

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           N A ++   MV  GL P++  YN+++ GY +   ++EA   F EM+ +    D+ +Y ++
Sbjct: 457 NVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSL 516

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G   +G I   + + D M + G  P V TYN ++   CK    + AI +F ++V +G 
Sbjct: 517 IDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIV-EGI 575

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+  T + ++  LC   +++ A + +  +    C PNVQTY ILI   C  G     + 
Sbjct: 576 WPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAML 635

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           L  KM      P+  T+ I+I  +  R ++D    A KL  EM+ RG +  + + N+  N
Sbjct: 636 LLSKMEDNDRPPDAITFEIIIGVLLQRNETDK---AEKLREEMIARGLVNIEKSLNQSHN 692



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 181/362 (50%), Gaps = 5/362 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID    +  ++ V  L+ +M   ++ P   TF I+ +     G+   A  +   M
Sbjct: 232 TYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMM 291

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
            + G +  + ++N +++  C  + V +A  LF ++ +   + DV++YNV+ +G+C  K  
Sbjct: 292 SKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMV 351

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           ++A+ + KE+ ++ L P + +YN ++ G   +G+I    +   EM       DVVTY  +
Sbjct: 352 DEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNIL 411

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +      G I  A  V   M+  GV P++ TYNAM+   C +++V  A  +F  MV  G 
Sbjct: 412 IDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGL 471

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+   YNV+I G C T  ++ A+     M+     P++ +YN LI   C+ G I    E
Sbjct: 472 EPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQE 531

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           L ++M      P++ TYNIL+ + F + +  D  ++   L   +  G  P  +T + +++
Sbjct: 532 LLDEMCDSGQSPDVITYNILLDA-FCKTQPFDKAIS---LFRQIVEGIWPDFYTNHAIVD 587

Query: 464 GL 465
            L
Sbjct: 588 NL 589



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 162/328 (49%), Gaps = 4/328 (1%)

Query: 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF- 196
           Q T+  +       G+   A+ +   M +   + +L  ++ ++D LCK+  V  A  L  
Sbjct: 160 QFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCS 219

Query: 197 KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256
           ++       D ++YN + +G C V R  +  ++L +MV   ++P+  T+NI++    + G
Sbjct: 220 QIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEG 279

Query: 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
           +I EA      M KR  + D+VTY  ++ G+     +  AR +F+ MV  G+ P V  YN
Sbjct: 280 RILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYN 339

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
            +I   CK   V+ A+++F+E+  K  +P   +YN +I GLC++G +    + +  M   
Sbjct: 340 VLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGS 399

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
              P+V TYNILI   C  G I   L +   M      PN+ TYN ++    +R   +++
Sbjct: 400 AQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLR---NNV 456

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
            VA  +   MV  G  P    +N ++NG
Sbjct: 457 NVAKDIFNRMVKSGLEPDILNYNVLING 484



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/418 (25%), Positives = 186/418 (44%), Gaps = 33/418 (7%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           S FD  +    R+  Y T  +L  +++S  + P+  TF I+   Y        A  +  +
Sbjct: 56  SVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLAT 115

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKR 222
           + + G + +L +FNTI++  C    + KA +  +    + +  D  +Y  + NG     +
Sbjct: 116 ILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQ 175

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
              AL +L+EM    + PNL  Y+ ++ G  + G + +A     ++ +R   +D VTY +
Sbjct: 176 IKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNS 235

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++ G   VG  +    +   MV   V P   T+N +I  LCK+  +  A  V   M  +G
Sbjct: 236 LIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRG 295

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
             P+  TYN ++ G C    +  A E   RM     EP+V  YN+LI  +C    ++  +
Sbjct: 296 EKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAM 355

Query: 403 ELFEKMGSGVCLPNLDTYNILISSM-------FVRKKSDDL------------------- 436
            LF+++ +   +P + +YN LI  +        V+K  D++                   
Sbjct: 356 VLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDAL 415

Query: 437 ------LVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
                 L A  +L+ M+ +G  P   T+N +++G  L  N  +AK+I     + G  P
Sbjct: 416 CKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEP 473



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 121/271 (44%), Gaps = 3/271 (1%)

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           C  +  + A+     MV     P  + ++ +L    R G    A   F +++ +     +
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
            T+T +++ +        A ++   ++  G  P++ T+N +I   C    +  A+   + 
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQN 150

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           ++ +GY+ +  TY  +I GL   G+++ AL  +  M+    +PN+  Y+ LI   C  G 
Sbjct: 151 LLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGF 210

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           +   L L  ++G    L +  TYN LI       +  ++    +LL +MV     P  +T
Sbjct: 211 VSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVT---QLLTKMVRENVDPDDYT 267

Query: 458 FNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           FN +++ L   G    A+ +L + S+ G  P
Sbjct: 268 FNILIDALCKEGRILEAQGVLAMMSKRGEKP 298


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 167/332 (50%), Gaps = 4/332 (1%)

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYN 211
           +AD A K F  M E G    + + N +L L  K  ++E A+ L+ ++FR +  + V ++N
Sbjct: 172 RADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFN 231

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
           ++ N  C   +  KA E +  M   G  PN+ +YN ++ GY   G IE A R    M+ +
Sbjct: 232 IMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVK 291

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
             E D  TY +++ G    G ++ A  +FD MV  G++P+  TYN +I   C K  +E A
Sbjct: 292 GIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERA 351

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
               +EMV KG MP+ +TYN+++  L   G M  A + +  M+     P+  TYNILI  
Sbjct: 352 FSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILING 411

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
           +   G  ++  +L  +M S    P   TY  LI   +V  + + +  A  L  +++D+G 
Sbjct: 412 YSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLI---YVLSRRNRMKEADDLFEKILDQGV 468

Query: 452 MPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
            P    FN +++G    GN   A  +L+   R
Sbjct: 469 SPDVIMFNAMVDGHCANGNVERAFMLLKEMDR 500



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 183/352 (51%), Gaps = 4/352 (1%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M+ L   P   ++  I   Y S G  + A +I  +M   G      ++ +++  +CKE +
Sbjct: 253 MEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGR 312

Query: 189 VEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           +E+A  LF K+       + ++YN + +G+C      +A     EMV +G+ P+++TYN+
Sbjct: 313 LEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNL 372

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++   F  G++ EA     EM+K+    D +TY  +++G+   G  K+A ++ + M++ G
Sbjct: 373 LVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKG 432

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           + P+  TY ++I VL +++ ++ A  +FE+++ +G  P+   +N ++ G C  G +ERA 
Sbjct: 433 IEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAF 492

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
             +  M      P+  T+N L++  C  G++E    L ++M      P+  +YN LIS  
Sbjct: 493 MLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGY 552

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
             R    D+  A ++  EM+  GF P   T+N ++  L       LA+E+L+
Sbjct: 553 GRR---GDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLK 601



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 106/376 (28%), Positives = 195/376 (51%), Gaps = 15/376 (3%)

Query: 91  NILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVS 150
           N++SY+ T  H  SS  + I+ A R+ D          M+   + P   T+  +      
Sbjct: 261 NVVSYN-TIIHGYSSRGN-IEGARRILD---------AMRVKGIEPDSYTYGSLISGMCK 309

Query: 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVIS 209
            G+ + A  +F  M E G   +  ++NT++D  C +  +E+A++   ++ +      V +
Sbjct: 310 EGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVST 369

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           YN++ +   +  R  +A +++KEM  +G+ P+  TYNI++ GY R G  ++A+    EM 
Sbjct: 370 YNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEML 429

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
            +  E   VTYT++++       +K A ++F+ +++ GV P V  +NAM+   C   +VE
Sbjct: 430 SKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVE 489

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
            A ++ +EM  K   P+  T+N +++G C  G++E A   +  MK    +P+  +YN LI
Sbjct: 490 RAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLI 549

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
             +   G+I+    + ++M S    P L TYN LI  +   ++ D   +A +LL EMV++
Sbjct: 550 SGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGD---LAEELLKEMVNK 606

Query: 450 GFMPRKFTFNRVLNGL 465
           G  P   T+  ++ G+
Sbjct: 607 GISPDDSTYLSLIEGM 622



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 126/281 (44%), Gaps = 38/281 (13%)

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           I ++++    C ++R ++A +    M ++G+ P + T N +L  + +  ++E AW  + E
Sbjct: 158 IVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAE 217

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M + +                                   +  +V T+N M+ VLCK+  
Sbjct: 218 MFRLR-----------------------------------ISSTVYTFNIMVNVLCKEGK 242

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
           ++ A      M G G+ PN  +YN +I G    G +E A   +  M+    EP+  TY  
Sbjct: 243 LKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGS 302

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           LI   C  G +E    LF+KM     +PN  TYN LI   +  K   DL  A     EMV
Sbjct: 303 LISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDG-YCNK--GDLERAFSYRDEMV 359

Query: 448 DRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            +G MP   T+N +++ L + G  G A ++++   + G +P
Sbjct: 360 KKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIP 400



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 118/257 (45%), Gaps = 39/257 (15%)

Query: 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH 167
           HA+ +  R+ +      ++  M+   + P   T+ I+   Y   G A +A  +   M   
Sbjct: 375 HALFMEGRMGE---ADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSK 431

Query: 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKA 226
           G   +  ++ +++ +L +  ++++A +LF K+       DVI +N + +G C      +A
Sbjct: 432 GIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERA 491

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
             +LKEM  + + P+  T+N +++G  R G++EEA     EMK+R  + D ++Y T++ G
Sbjct: 492 FMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISG 551

Query: 287 FGVVGEIKRARNVFDGM-----------------------------------VNGGVLPS 311
           +G  G+IK A  V D M                                   VN G+ P 
Sbjct: 552 YGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPD 611

Query: 312 VATYNAMIQVLCKKDSV 328
            +TY ++I+ +   D++
Sbjct: 612 DSTYLSLIEGMGNVDTL 628


>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Vitis
           vinifera]
          Length = 829

 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 180/369 (48%), Gaps = 5/369 (1%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           W +V RM    L P   T+ I+   +   G  + + K+   M   G + S+ ++  +L  
Sbjct: 360 WKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSS 419

Query: 183 LCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           LCK  ++++A  L         K D+++Y+V+ +G C      +A+E+ +EM  + + PN
Sbjct: 420 LCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPN 479

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
               + ++ G F  G I EA  +F  + K     +++ Y  ++ G+  +G I  A   + 
Sbjct: 480 SFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYK 539

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            ++  G+ P++ T+N++I   CKK  +  A+ + + +   G +P S TY  ++ G C  G
Sbjct: 540 QIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEG 599

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
           +M    + +  M+    +P   TY ++++  C  G +   ++L + M +    P+  TYN
Sbjct: 600 DMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYN 659

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL-RL 480
            +I S     K+ DL  A +L  +M+     P   T+N ++NGL + GN   A  +L  L
Sbjct: 660 TVIQSFC---KAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTL 716

Query: 481 QSRCGRLPR 489
           Q +  RL +
Sbjct: 717 QDQSIRLTK 725



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/356 (27%), Positives = 170/356 (47%), Gaps = 4/356 (1%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID   R    +   T +        GP+  +F  +   +   G  D A   F  M ++G 
Sbjct: 242 IDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYGL 301

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALE 228
              + S+N +L  LC    +E+A            + D+++YN++ANG+ ++   + A +
Sbjct: 302 LPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWK 361

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           V++ M+  GLNP+L TY I++ G+ + G IEE+++   +M  +  ++ +VTYT ++    
Sbjct: 362 VVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLC 421

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G I  A  +   M   G+ P + TY+ +I  LCK+ +VE AI ++EEM  K   PNS 
Sbjct: 422 KSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPNSF 481

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
             + +I GL   G +  A  +   +   +    +  YNI+I  +   G I   +  ++++
Sbjct: 482 VCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQI 541

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
                 P + T+N LI     + K   L  A KLL  +   G +P   T+  ++NG
Sbjct: 542 IEKGISPTIVTFNSLIYGFCKKGK---LAEAVKLLDTIKVHGLVPTSVTYTTLMNG 594



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 158/298 (53%), Gaps = 6/298 (2%)

Query: 179 ILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           ++D LC++ +++ A    +   G+ F   V+S+N + +G+C +   + A      M+  G
Sbjct: 241 LIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYG 300

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
           L P++ +YNI+L G   AG +EEA  F  +M+    E D+VTY  + +GF ++G I  A 
Sbjct: 301 LLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAW 360

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
            V   M+  G+ P + TY  +I   C+  ++E +  + E+M+ +G   +  TY V++  L
Sbjct: 361 KVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSL 420

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
           C +G ++ A+  +  M+    +P++ TY++LI   C  G +E  +EL+E+M S    PN 
Sbjct: 421 CKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPNS 480

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT-FNRVLNGLLLIGNQGLA 474
              + +IS +F +    +     ++  + V +  +  +   +N +++G   +GN G A
Sbjct: 481 FVCSAIISGLFEKGAISE----AQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEA 534



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/404 (21%), Positives = 174/404 (43%), Gaps = 47/404 (11%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL--NSF--NTIL 180
           L+H M+ + L P   T++++       G  + A++++    E  C + +  NSF  + I+
Sbjct: 432 LLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELY----EEMCSKRIYPNSFVCSAII 487

Query: 181 DLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
             L ++  + +A   F  V +     ++I YN++ +G+  +    +A+   K+++++G++
Sbjct: 488 SGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGIS 547

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFF---------------------------------- 265
           P + T+N ++ G+ + G++ EA +                                    
Sbjct: 548 PTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDM 607

Query: 266 -LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
             EM+ +  +   +TYT +V G    G +  +  +   M   G+ P   TYN +IQ  CK
Sbjct: 608 LHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCK 667

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
              ++ A  +  +M+     P+  TYNV+I GLC  G ++ A   +  ++D         
Sbjct: 668 AHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVA 727

Query: 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLI 444
           Y  +I+  C  G+++  L  F +M       ++  Y+ +I+ +  R    D   A     
Sbjct: 728 YTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCKRNLITD---AKFFFC 784

Query: 445 EMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            M+  G  P +     +LN     G+     EI  +  +CG LP
Sbjct: 785 MMLTHGIPPDQDICLVMLNAFHRSGDPNSVFEIFAMMIKCGLLP 828



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 159/330 (48%), Gaps = 21/330 (6%)

Query: 169 CRQSLNSF------NTILDLL-CKEKKVEKAYN-LFKVFRGK---FKADVISYNVIANGW 217
           C    NSF      N + D+L C   + E  ++ LF + + K    +  + +YN +    
Sbjct: 154 CELLCNSFRDWDLNNVVWDMLACAYSRAEMVHDALFVLAKMKVLNLQVSIATYNSLLYN- 212

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
             ++ T+   +V  E+   G+  N  T  I++ G  R  ++++A  F  E    +    V
Sbjct: 213 --LRHTDIMWDVYNEIKASGVPQNEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSV 270

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           V++  ++ GF  +G +  A++ F  M+  G+LP V +YN ++  LC   S+E A+    +
Sbjct: 271 VSFNALMSGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTND 330

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M   G  P+  TYN++  G    G +  A + V RM  +   P++ TY ILI   C  G 
Sbjct: 331 MENHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGN 390

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           IE   +L EKM S     ++ TY +L+SS+    + D+ ++   LL EM   G  P   T
Sbjct: 391 IEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVI---LLHEMEVIGLKPDLLT 447

Query: 458 FNRVLNGLLLIGNQGLAKEILRL-QSRCGR 486
           ++ +++GL     +G  +E + L +  C +
Sbjct: 448 YSVLIHGLC---KRGAVEEAIELYEEMCSK 474



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 48/229 (20%), Positives = 107/229 (46%), Gaps = 1/229 (0%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177
           D  +++ ++H M++ ++ PTQ T+ ++ +     G+   +V++   M+  G      ++N
Sbjct: 600 DMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYN 659

Query: 178 TILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
           T++   CK   ++KA+ L  ++ +   +   ++YNV+ NG C+      A  +L  + D+
Sbjct: 660 TVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQ 719

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
            +      Y  ++K +   G ++ A  FF +M +R  E+ +  Y+ +++       I  A
Sbjct: 720 SIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCKRNLITDA 779

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
           +  F  M+  G+ P       M+    +     +   +F  M+  G +P
Sbjct: 780 KFFFCMMLTHGIPPDQDICLVMLNAFHRSGDPNSVFEIFAMMIKCGLLP 828


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 102/347 (29%), Positives = 175/347 (50%), Gaps = 6/347 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S+   ID   + R       L   MK   + PT  ++  +   +   GK + A ++F  M
Sbjct: 244 SYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEM 303

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKR 222
              G + ++ +FN ++D+LCKE KV +A +L +V   RG    ++++YN +  G+CLV  
Sbjct: 304 VNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRG-IVPNLLTYNSLIEGFCLVGD 362

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
            N A E+   M  +G  P++  Y +++ GY +  ++EEA + +  M +     DV TY  
Sbjct: 363 LNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGA 422

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++ G    G++  A+ +F  M   G+   +  Y   +  LCK   +  A+ +F ++    
Sbjct: 423 LLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYN 482

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
              +   +N +I GLC  G++E A E   ++  +E +P+V TYNI+I  FC  G++ +  
Sbjct: 483 IKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKAN 542

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
            LF+KM    C P+  TY  LI   F  KK + ++   +LL  MV R
Sbjct: 543 ILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVV---ELLHMMVQR 586



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 172/336 (51%), Gaps = 4/336 (1%)

Query: 132 LSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEK 191
           ++  P   +++II +      + D A  +F  M   G   ++ S+ +++   C   K E+
Sbjct: 236 INFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEE 295

Query: 192 AYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250
           A  LF ++     + +V+++NV+ +  C   +  +A ++L+ M+ RG+ PNL TYN +++
Sbjct: 296 AKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIE 355

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
           G+   G +  A   F+ M  + CE DV+ YT +++G+    +++ A  +++GM+  G  P
Sbjct: 356 GFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRP 415

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
            V TY A++  L +   V +A  +F  M   G   +   Y + + GLC  G +  A+E  
Sbjct: 416 DVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELF 475

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
            ++K    + +++ +N LI   C AG++E   ELFEK+      P++ TYNI+I   F R
Sbjct: 476 NKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHE-FCR 534

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
                ++ A  L  +M   G  P K T+  ++ G  
Sbjct: 535 --GGQVVKANILFQKMEKNGCTPDKITYATLIRGFF 568



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 166/382 (43%), Gaps = 34/382 (8%)

Query: 90  FNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149
           F+   +H +   SP +F+  I    +L  +      +H  K+ ++  TQ           
Sbjct: 37  FSSAVHHKSLNVSPQNFNTPISFQQQLSMF------LHNCKTGNITATQ----------- 79

Query: 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVI 208
                  A + F  M        L+SF  +L  L K K   + + L+   R      D  
Sbjct: 80  -------AFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCC 132

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           + N++ N  C V R  + L V+  ++ RG  P++ TY  ++KG     +I +A   F  M
Sbjct: 133 TLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRM 192

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL------PSVATYNAMIQVL 322
           +K  C  + +TY T++ G    G I  A  +   M+N   L      P V +Y+ +I  L
Sbjct: 193 QKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDAL 252

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
           CK    + A  +FEEM  +G  P   +Y  +I G C  G+ E A      M +   +PNV
Sbjct: 253 CKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNV 312

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
            T+N+LI   C  G++    +L E M     +PNL TYN LI    +     DL  A +L
Sbjct: 313 VTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCL---VGDLNSAREL 369

Query: 443 LIEMVDRGFMPRKFTFNRVLNG 464
            + M  +G  P    +  ++NG
Sbjct: 370 FVSMPSKGCEPDVICYTVLING 391



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 125/527 (23%), Positives = 233/527 (44%), Gaps = 75/527 (14%)

Query: 26  TTTSPAPLPPAAADPAALASLI-----LTSTDPRTLTQTLHCPSLHWTPQ-------LVD 73
           +T+   P   +   P   +SL      + S++P   +  +H  SL+ +PQ          
Sbjct: 3   STSKTVPSASSIVKPNLSSSLFTHSPTIPSSNPH-FSSAVHHKSLNVSPQNFNTPISFQQ 61

Query: 74  QIIKRLWN------HALKALHFFNILSY-HPTYAHSP-SSFDHAIDLAARLRDYRTVWTL 125
           Q+   L N       A +A  FF+++ Y +PT    P SSF H +   A+++ Y  V+ L
Sbjct: 62  QLSMFLHNCKTGNITATQAFQFFHLMMYSNPT---PPLSSFTHLLSGLAKIKHYSQVFYL 118

Query: 126 VHRMKSLSLGPTQKTFAIIAE-----------RYVSAG---------------------- 152
            ++M+   + P   T  I+               V AG                      
Sbjct: 119 YNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCM 178

Query: 153 --KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-------VFRGKF 203
             +  +A  +F  M + GC  +  ++ T++  LC+   +  A  L +       ++   F
Sbjct: 179 EHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINF 238

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
           K  VISY++I +  C  +R ++A ++ +EM  +G+ P + +Y  ++ G+   G+ EEA R
Sbjct: 239 KPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKR 298

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
            F EM  +  + +VVT+  ++      G++  A+++ + M+  G++P++ TYN++I+  C
Sbjct: 299 LFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFC 358

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
               + +A  +F  M  KG  P+   Y V+I G C T ++E A++    M      P+V+
Sbjct: 359 LVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVK 418

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
           TY  L+      G++    +LF  M       +L  Y I ++ +    K+  L  A +L 
Sbjct: 419 TYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLC---KNGCLFEAMELF 475

Query: 444 IEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
            ++           FN +++GL   G    A E+        +LP++
Sbjct: 476 NKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFE------KLPQE 516



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 69/123 (56%), Gaps = 1/123 (0%)

Query: 156 RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIA 214
            A+++F  +  +  +  +  FN ++D LCK  K+E A+ LF K+ + + + DV++YN++ 
Sbjct: 470 EAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMI 529

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
           + +C   +  KA  + ++M   G  P+  TY  +++G+F + ++E+       M +R   
Sbjct: 530 HEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQRDVS 589

Query: 275 IDV 277
           +DV
Sbjct: 590 LDV 592


>gi|224136310|ref|XP_002326829.1| predicted protein [Populus trichocarpa]
 gi|222835144|gb|EEE73579.1| predicted protein [Populus trichocarpa]
          Length = 664

 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 124/451 (27%), Positives = 213/451 (47%), Gaps = 47/451 (10%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAAR---LRDYRTVWTLVHRMKSLSLGPTQKTF 141
           KA  FFN  S +  +AH   S+   +D+  R   L   R     + R  + S+    +  
Sbjct: 42  KAFEFFNWASRN-GFAHDSRSYFMMLDILGRNGNLNIARNFLFSIERRSNGSVKIEDRFC 100

Query: 142 AIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG 201
             +   Y +AG  + A+K+F  M   G   S+ +FN++L +L K  +   A+++F    G
Sbjct: 101 NTLLRSYGNAGLFNEAIKLFSLMKSSGVSPSVITFNSLLLILLKRGRTNMAHSVFDEMCG 160

Query: 202 KFKA--DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
            +    D  ++N++  G+C     ++     KEM      P++ TYN ++ G  RAG++ 
Sbjct: 161 TYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVR 220

Query: 260 EAWRFFLEMKKRKCEI--DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
            A      M K+  ++  DVVTYTT+V G+ +  EI  A  VF+ MV+ G+ P+  TYN 
Sbjct: 221 IAHNVVKGMVKKMKDLSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDITYNT 280

Query: 318 MIQVLCKKDSVENAILVFEEMV-GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
           +I+ LC+    +    +    V G+G++P++ TYN ++   C  G  + AL+   +MK+ 
Sbjct: 281 LIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDEALKMFKKMKEL 340

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMG-------SGVCLPNLDTYNILISSM-- 427
           + +P+  TY++LIR  C  G+ ER  +LF+K+           C P +  YN +   +  
Sbjct: 341 KVQPDSATYSVLIRNLCQRGDFERAEQLFDKLSDEDILLRDDGCTPLVAAYNPIFDFLCK 400

Query: 428 -------------FVRKKSDD-----LLVAG-----------KLLIEMVDRGFMPRKFTF 458
                         ++K + D      L+ G           KLL+ M+ R ++P   T+
Sbjct: 401 NGKTHKAERVFRQLMKKGTQDPPSYKTLIIGHCKEGTFEAGYKLLLFMLRRDYVPDFETY 460

Query: 459 NRVLNGLLLIGNQGLAKEILRLQSRCGRLPR 489
             ++NG L  G   LA + L    +   LP+
Sbjct: 461 VLLINGFLQKGEPILAYKTLERMLKSSYLPK 491



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 157/360 (43%), Gaps = 50/360 (13%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   TF I+   +      D   + F  M    C   + ++NT++D LC+  KV  A+N+
Sbjct: 166 PDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVRIAHNV 225

Query: 196 FKVFRGKFK---ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
            K    K K    DV++Y  +  G+C+ +  ++AL V +EMV RGL PN  TYN ++KG 
Sbjct: 226 VKGMVKKMKDLSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDITYNTLIKGL 285

Query: 253 FR------------------------------------AGQIEEAWRFFLEMKKRKCEID 276
                                                 AG  +EA + F +MK+ K + D
Sbjct: 286 CEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPD 345

Query: 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL-------PSVATYNAMIQVLCKKDSVE 329
             TY+ ++      G+ +RA  +FD + +  +L       P VA YN +   LCK     
Sbjct: 346 SATYSVLIRNLCQRGDFERAEQLFDKLSDEDILLRDDGCTPLVAAYNPIFDFLCKNGKTH 405

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
            A  VF +++ KG   +  +Y  +I G C  G  E   + +  M   +  P+ +TY +LI
Sbjct: 406 KAERVFRQLMKKG-TQDPPSYKTLIIGHCKEGTFEAGYKLLLFMLRRDYVPDFETYVLLI 464

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
             F   GE     +  E+M     LP    ++ ++S +    K+D    +   ++ M+DR
Sbjct: 465 NGFLQKGEPILAYKTLERMLKSSYLPKTSVFHSILSELL---KNDFARESASFVVLMIDR 521



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/331 (19%), Positives = 127/331 (38%), Gaps = 45/331 (13%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           +  V  +V +MK LS  P   T+  +   Y    + D A+ +F  M   G + +  ++NT
Sbjct: 223 HNVVKGMVKKMKDLS--PDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDITYNT 280

Query: 179 ILDLLCKEKKVEKAYNLFKVFRGK--FKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
           ++  LC+ +K +K   +     G   F  D  +YN + N  C     ++AL++ K+M + 
Sbjct: 281 LIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDEALKMFKKMKEL 340

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFF-------LEMKKRKCEIDVVTYTTIVHGFGV 289
            + P+  TY+++++   + G  E A + F       + ++   C   V  Y  I      
Sbjct: 341 KVQPDSATYSVLIRNLCQRGDFERAEQLFDKLSDEDILLRDDGCTPLVAAYNPIFDFLCK 400

Query: 290 VGEIKRARNVFDGMVNGGV----------------------------------LPSVATY 315
            G+  +A  VF  ++  G                                   +P   TY
Sbjct: 401 NGKTHKAERVFRQLMKKGTQDPPSYKTLIIGHCKEGTFEAGYKLLLFMLRRDYVPDFETY 460

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
             +I    +K     A    E M+   Y+P ++ ++ ++  L        +  FV  M D
Sbjct: 461 VLLINGFLQKGEPILAYKTLERMLKSSYLPKTSVFHSILSELLKNDFARESASFVVLMID 520

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFE 406
            +   N+      +R    +G   +  ++ E
Sbjct: 521 RKIRQNINLSTHTMRLLFGSGLRIKAFQIVE 551



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 122/299 (40%), Gaps = 54/299 (18%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF-------LSMHEHGCR 170
           ++     +  +MK L + P   T++++       G  +RA ++F       + + + GC 
Sbjct: 326 NFDEALKMFKKMKELKVQPDSATYSVLIRNLCQRGDFERAEQLFDKLSDEDILLRDDGCT 385

Query: 171 QSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVL 230
             + ++N I D LCK  K  KA  +F+    K   D  SY  +  G C         ++L
Sbjct: 386 PLVAAYNPIFDFLCKNGKTHKAERVFRQLMKKGTQDPPSYKTLIIGHCKEGTFEAGYKLL 445

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQ--------------------------------- 257
             M+ R   P+  TY +++ G+ + G+                                 
Sbjct: 446 LFMLRRDYVPDFETYVLLINGFLQKGEPILAYKTLERMLKSSYLPKTSVFHSILSELLKN 505

Query: 258 --IEEAWRFFLEMKKRKC--EIDVVTYTT-IVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
               E+  F + M  RK    I++ T+T  ++ G G+   IK A  + + + + G +  +
Sbjct: 506 DFARESASFVVLMIDRKIRQNINLSTHTMRLLFGSGL--RIK-AFQIVELLYDNGYMVDM 562

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
                +I  +C+   + +A  +    + KG+  +    NVVI GLC   +M+R LE  G
Sbjct: 563 ---EELIGFICQNGKLLDAQKMLSFCLEKGHNVDINVCNVVIEGLC---KMKRPLEAFG 615


>gi|302143409|emb|CBI21970.3| unnamed protein product [Vitis vinifera]
          Length = 375

 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 184/364 (50%), Gaps = 10/364 (2%)

Query: 103 PSSFDHAIDLAA--RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           PS  D +  L +  R++ Y TV +L  +M S  +     T  I+   +    +   A  +
Sbjct: 8   PSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSV 67

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCL 219
              + + G + S  +F T++  LC E K+ +A  LF    G+ F+ DV++Y  + NG C 
Sbjct: 68  LGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCK 127

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
            ++  +AL +  +M+ +G++PN  TY+ ++ G    G  +EA R F  M  RK   D +T
Sbjct: 128 DRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLT 187

Query: 280 YTTIVHGF---GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE 336
           + T+V      G++  + +A  +F+ M   G++P   TYN +I  LC    + +AI +F 
Sbjct: 188 FNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFH 247

Query: 337 EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
           EMV  G +P+  TY ++   LC    +  A+  +  ++    +P++  Y+I++   C AG
Sbjct: 248 EMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAG 307

Query: 397 EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
           E+E   +LF K+ S    P++ TY I+I+ +    +   L  A KL  EM D   +    
Sbjct: 308 ELEAARDLFSKLSSKGLHPDVRTYTIMINGLC---QQGLLAEASKLFGEM-DENDIESYS 363

Query: 457 TFNR 460
           TF+R
Sbjct: 364 TFSR 367



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 133/278 (47%), Gaps = 8/278 (2%)

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           ++ ++ +      +K  +  L + K+M   G+  N  T NI++  +    ++  A+    
Sbjct: 10  IVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSVLG 69

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           ++ K   +    T+TT++ G  V G+I  A  +FD M   G  P V TY  +I  LCK  
Sbjct: 70  DILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKDR 129

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            +  A+ +F +M+ KG  PN+ TY+ +I GLC  G  + A+     M   +  P+  T+N
Sbjct: 130 QLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFN 189

Query: 387 ILIRYFCDAGEIE---RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
            L+   C  G I+   + + LFE+M     +P+  TYN LI  +    +  D   A  L 
Sbjct: 190 TLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRD---AIALF 246

Query: 444 IEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481
            EMV  G +P   T+  + +   L  N  LA+ ++ L+
Sbjct: 247 HEMVVYGQIPDLVTYRILFD--YLCKNHRLAEAMVLLK 282



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 111/249 (44%)

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           P++  ++ +L    R          + +M       +  T   +++ F  +  +  A +V
Sbjct: 8   PSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSV 67

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
              ++  G  PS AT+  +I+ LC +  +  A+ +F++M G+G+ P+  TY  +I GLC 
Sbjct: 68  LGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCK 127

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419
             ++  AL     M      PN  TY+ LI   C  G  +  + LF  M     +P+  T
Sbjct: 128 DRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLT 187

Query: 420 YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           +N L+ ++        +  A  L  EM  +G +P   T+N +++GL  +G    A  +  
Sbjct: 188 FNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFH 247

Query: 480 LQSRCGRLP 488
                G++P
Sbjct: 248 EMVVYGQIP 256



 Score = 40.0 bits (92), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 4/147 (2%)

Query: 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH 167
           H +    RLRD      L H M      P   T+ I+ +      +   A+ +   +   
Sbjct: 231 HGLCHVGRLRD---AIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGT 287

Query: 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKA 226
                ++ ++ ++D +C+  ++E A +LF     K    DV +Y ++ NG C      +A
Sbjct: 288 NLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEA 347

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYF 253
            ++  EM +  +    T      KG F
Sbjct: 348 SKLFGEMDENDIESYSTFSRNAFKGIF 374


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 184/395 (46%), Gaps = 38/395 (9%)

Query: 103 PSSFDHAIDLAARLRD--YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P+   + + L A  R+  +     ++  M++    P   T+ +I       G+ D A ++
Sbjct: 176 PNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREL 235

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCL 219
              +  +G +    S+ T+L  LC  K+ +    LF ++       + ++++++   +C 
Sbjct: 236 LNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCR 295

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
                +A++VL++M + G   N T  NIV+    + G++++A++   +M    C  D ++
Sbjct: 296 GGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTIS 355

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           YTT++ G         A+ + + MV     P+  T+N  I +LC+K  +E AI++ E+M 
Sbjct: 356 YTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMS 415

Query: 340 GKGYM--------------------------------PNSTTYNVVIRGLCHTGEMERAL 367
             G                                  PN+ TY  ++ GLC+   ++ A 
Sbjct: 416 EHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCKPNTITYTTLLTGLCNAERLDGAA 475

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           E V  M   +C PNV T+N+L+ +FC  G +E  +EL E+M    C PNL TYN L+  +
Sbjct: 476 ELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGI 535

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
                S+D L   +LL  +V +G  P   TF+ ++
Sbjct: 536 TKDCSSEDAL---ELLHGLVSKGVSPDVITFSSII 567



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 177/385 (45%), Gaps = 39/385 (10%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            R+ D R    L++R+ S    P   ++  + +   ++ + D   ++F  M E  C  + 
Sbjct: 227 GRVDDARE---LLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNE 283

Query: 174 NSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
            +F+ ++   C+   VE+A  +  ++       +    N++ N  C   R + A ++L +
Sbjct: 284 VTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLND 343

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M   G NP+  +Y  VLKG  RA + ++A     EM +  C  + VT+ T +      G 
Sbjct: 344 MGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGL 403

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           I++A  + + M   G    V TYNA++   C +  +++A+ +F  M  K   PN+ TY  
Sbjct: 404 IEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCK---PNTITYTT 460

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           ++ GLC+   ++ A E V  M   +C PNV T+N+L+ +FC  G +E  +EL E+M    
Sbjct: 461 LLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHG 520

Query: 413 CLPNLDTYNILI--------------------------------SSMFVRKKSDDLLVAG 440
           C PNL TYN L+                                S + +  K D +  A 
Sbjct: 521 CTPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAV 580

Query: 441 KLLIEMVDRGFMPRKFTFNRVLNGL 465
           +L   + D G  P+   +N++L GL
Sbjct: 581 QLFHVVQDIGMRPKAVVYNKILLGL 605



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 166/356 (46%), Gaps = 11/356 (3%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           + S+ + P   T+  +       G+   A+ +   M   GC+ ++ ++  +L+ +C+   
Sbjct: 134 IGSMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSG 193

Query: 189 VEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
            E+A  +    R K    ++++YNVI NG C   R + A E+L  +   G  P+  +Y  
Sbjct: 194 FEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTT 253

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           +LKG   + + ++    F EM ++ C  + VT+  ++  F   G ++RA  V + M   G
Sbjct: 254 LLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHG 313

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
              +    N +I  +CK+  V++A  +  +M   G  P++ +Y  V++GLC     + A 
Sbjct: 314 CATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAK 373

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           E +  M  + C PN  T+N  I   C  G IE+ + L E+M    C   + TYN L++  
Sbjct: 374 ELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGF 433

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL----LIGNQGLAKEILR 479
            V+   D  L   +L   M  +   P   T+  +L GL     L G   L  E+LR
Sbjct: 434 CVQGHIDSAL---ELFRSMPCK---PNTITYTTLLTGLCNAERLDGAAELVAEMLR 483



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 116/440 (26%), Positives = 183/440 (41%), Gaps = 81/440 (18%)

Query: 92  ILSYHPTYAHSPSSFDHAIDLAARLRDYR--TVWTLVHRMKSLSLGPTQKTFAIIAERYV 149
           +L+  P+Y   P +  +   L       R   V  L   M   +  P + TF ++   + 
Sbjct: 235 LLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFC 294

Query: 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF--KADV 207
             G  +RA+++   M EHGC  +    N +++ +CK+ +V+ A+ L     G +    D 
Sbjct: 295 RGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDM-GSYGCNPDT 353

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           ISY  +  G C  +R + A E+L EMV     PN  T+N  +    + G IE+A     +
Sbjct: 354 ISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQ 413

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF-------------------------DG 302
           M +  C + VVTY  +V+GF V G I  A  +F                         DG
Sbjct: 414 MSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCKPNTITYTTLLTGLCNAERLDG 473

Query: 303 -------MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
                  M+ G   P+V T+N ++   C+K  +E AI + E+M+  G  PN  TYN ++ 
Sbjct: 474 AAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLD 533

Query: 356 GLCHTGEMERALEFVGRM--------------------KDDECEPNVQ------------ 383
           G+      E ALE +  +                    K+D  E  VQ            
Sbjct: 534 GITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRP 593

Query: 384 ---TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF---VRKKSDDLL 437
               YN ++   C   EI+  ++ F  M S  C+PN  TY ILI  +    + K++ DLL
Sbjct: 594 KAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEAQDLL 653

Query: 438 VAGKLLIEMVDRGFMPRKFT 457
                   +  RG + +  T
Sbjct: 654 SV------LCSRGVLNKNLT 667



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 159/325 (48%), Gaps = 8/325 (2%)

Query: 90  FNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWT----LVHRMKSLSLGPTQKTFAIIA 145
           F +L+   +Y  +P +  +   L    R  R  W     L++ M   +  P + TF    
Sbjct: 338 FKLLNDMGSYGCNPDTISYTTVLKGLCRAER--WDDAKELLNEMVRNNCPPNEVTFNTFI 395

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA 205
                 G  ++A+ +   M EHGC   + ++N +++  C +  ++ A  LF+      K 
Sbjct: 396 CILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSM--PCKP 453

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           + I+Y  +  G C  +R + A E++ EM+     PN+ T+N+++  + + G +EEA    
Sbjct: 454 NTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELV 513

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
            +M +  C  +++TY T++ G       + A  +  G+V+ GV P V T++++I +L K+
Sbjct: 514 EQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKE 573

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
           D +E A+ +F  +   G  P +  YN ++ GLC   E++ A++F   M  + C PN  TY
Sbjct: 574 DRIEEAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNESTY 633

Query: 386 NILIRYFCDAGEIERGLELFEKMGS 410
            ILI      G ++   +L   + S
Sbjct: 634 IILIEGLAHEGLLKEAQDLLSVLCS 658



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 138/313 (44%), Gaps = 41/313 (13%)

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           DV     +    C   RT+ A  VL+     G   ++  YN ++ GY R G ++ A R  
Sbjct: 75  DVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRLI 134

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
             M       D  TYT ++      G +  A ++ D M+  G  P+V TY  +++ +C+ 
Sbjct: 135 GSMPVAP---DAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRN 191

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR------------- 372
              E A+ V +EM  KG  PN  TYNV+I G+C  G ++ A E + R             
Sbjct: 192 SGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSY 251

Query: 373 ----------------------MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
                                 M +  C PN  T+++LIR+FC  G +ER +++ E+M  
Sbjct: 252 TTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTE 311

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
             C  N    NI+I+S+  + + DD   A KLL +M   G  P   ++  VL GL     
Sbjct: 312 HGCATNTTLCNIVINSICKQGRVDD---AFKLLNDMGSYGCNPDTISYTTVLKGLCRAER 368

Query: 471 QGLAKEILRLQSR 483
              AKE+L    R
Sbjct: 369 WDDAKELLNEMVR 381



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 82/177 (46%), Gaps = 7/177 (3%)

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G  P V     +I+ LC++    +A  V     G G   +   YN ++ G C  G ++ A
Sbjct: 71  GEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAA 130

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
              +G M      P+  TY  LIR  CD G +   L L + M    C PN+ TY +L+ +
Sbjct: 131 RRLIGSMP---VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEA 187

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL-RLQS 482
           M    ++     A  +L EM  +G  P   T+N ++NG+   G    A+E+L RL S
Sbjct: 188 MC---RNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPS 241


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 163/319 (51%), Gaps = 7/319 (2%)

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKAD 206
           Y  AG+ D A ++   M          ++NT++  LC   +   A  +  ++ R +   D
Sbjct: 10  YCGAGQLDAARRLVAEMP---VEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPD 66

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           V++Y ++    C      +A+++L EM D+G  P++ TYN+V+ G  + G++++A  F  
Sbjct: 67  VVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLK 126

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
            +    CE + V+Y  ++ G       + A  +   M   G  P+V T+N +I  LC+K 
Sbjct: 127 NLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKG 186

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            VE A+ V E++   G  PNS +YN ++   C   +M++A+ F+  M    C P++ +YN
Sbjct: 187 LVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYN 246

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            L+   C +GE++  +EL  ++    C P L +YN +I  +    K+ + L   +LL EM
Sbjct: 247 TLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEAL---ELLNEM 303

Query: 447 VDRGFMPRKFTFNRVLNGL 465
           V +G  P   T++ +  GL
Sbjct: 304 VSKGLQPDIITYSTIAAGL 322



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 165/332 (49%), Gaps = 6/332 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+  +       G+   A+ +   M    C   + ++  +L+  CK    ++A  L
Sbjct: 30  PDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKL 89

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
               R K    D+++YNV+ NG C   R + A+E LK +   G  PN  +YNIVLKG   
Sbjct: 90  LDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCT 149

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
           A + E+A     EM ++ C  +VVT+  ++      G ++ A  V + +   G  P+  +
Sbjct: 150 AERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLS 209

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN ++   CK+  ++ A+   + MV +G  P+  +YN ++  LC +GE++ A+E + ++K
Sbjct: 210 YNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLK 269

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
           D  C P + +YN +I     AG+ +  LEL  +M S    P++ TY+ + + +    + +
Sbjct: 270 DKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIE 329

Query: 435 DLLVA-GKLLIEMVDRGFMPRKFTFNRVLNGL 465
           D + A GK+     D G  P    +N ++ GL
Sbjct: 330 DAIRAFGKV----QDMGIRPNTVLYNAIILGL 357



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 160/341 (46%), Gaps = 6/341 (1%)

Query: 103 PSSFDHAIDLAARLR--DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P    + I L A  +   Y+    L+  M+     P   T+ ++       G+ D A++ 
Sbjct: 65  PDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEF 124

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCL 219
             ++  +GC  +  S+N +L  LC  ++ E A  L      K    +V+++N++ +  C 
Sbjct: 125 LKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCR 184

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
                 ALEVL+++   G  PN  +YN +L  + +  ++++A  F   M  R C  D+V+
Sbjct: 185 KGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVS 244

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y T++      GE+  A  +   + + G  P + +YN +I  L K    + A+ +  EMV
Sbjct: 245 YNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMV 304

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            KG  P+  TY+ +  GLC    +E A+   G+++D    PN   YN +I   C   E  
Sbjct: 305 SKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETH 364

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVR---KKSDDLL 437
             ++LF  M    C+PN  TY ILI  +      K++ DLL
Sbjct: 365 SAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLL 405



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 160/304 (52%), Gaps = 5/304 (1%)

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           ++N ++   C   +++ A  L  V     + D  +YN +  G C   RT  AL VL EM+
Sbjct: 2   AYNAMVAGYCGAGQLDAARRL--VAEMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEML 59

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
            R   P++ TY I+L+   +    ++A +   EM+ + C  D+VTY  +V+G    G + 
Sbjct: 60  RRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVD 119

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
            A      + + G  P+  +YN +++ LC  +  E+A  +  EM  KG  PN  T+N++I
Sbjct: 120 DAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLI 179

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
             LC  G +E ALE + ++    C PN  +YN L+  FC   ++++ +   + M S  C 
Sbjct: 180 SFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCY 239

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           P++ +YN L++++    +S ++ VA +LL ++ D+G  P   ++N V++GL   G    A
Sbjct: 240 PDIVSYNTLLTALC---RSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEA 296

Query: 475 KEIL 478
            E+L
Sbjct: 297 LELL 300



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 150/286 (52%), Gaps = 1/286 (0%)

Query: 126 VHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185
           +  + S    P   ++ I+ +   +A + + A ++   M + GC  ++ +FN ++  LC+
Sbjct: 125 LKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCR 184

Query: 186 EKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
           +  VE A  +  ++ +     + +SYN + + +C  K+ +KA+  L  MV RG  P++ +
Sbjct: 185 KGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVS 244

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           YN +L    R+G+++ A     ++K + C   +++Y T++ G    G+ K A  + + MV
Sbjct: 245 YNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMV 304

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
           + G+ P + TY+ +   LC++D +E+AI  F ++   G  PN+  YN +I GLC   E  
Sbjct: 305 SKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETH 364

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
            A++    M  + C PN  TY ILI      G I+   +L +++ S
Sbjct: 365 SAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCS 410



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 108/215 (50%), Gaps = 6/215 (2%)

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           + Y  +V G+   G++  AR +   M    V P   TYN +I+ LC +    NA+ V +E
Sbjct: 1   MAYNAMVAGYCGAGQLDAARRLVAEMP---VEPDAYTYNTLIRGLCGRGRTANALAVLDE 57

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M+ +  +P+  TY +++   C     ++A++ +  M+D  C P++ TYN+++   C  G 
Sbjct: 58  MLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGR 117

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           ++  +E  + + S  C PN  +YNI++  +   ++ +D   A +L+ EM  +G  P   T
Sbjct: 118 VDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWED---AEELMGEMGQKGCPPNVVT 174

Query: 458 FNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQFK 492
           FN +++ L   G    A E+L    + G  P    
Sbjct: 175 FNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLS 209



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 114/239 (47%), Gaps = 1/239 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  I    R         ++ ++      P   ++  +   +    K D+A+     M
Sbjct: 174 TFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLM 233

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADV-ISYNVIANGWCLVKRT 223
              GC   + S+NT+L  LC+  +V+ A  L    + K  A V ISYN + +G     +T
Sbjct: 234 VSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKT 293

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +ALE+L EMV +GL P++ TY+ +  G  R  +IE+A R F +++      + V Y  I
Sbjct: 294 KEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAI 353

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           + G     E   A ++F  M+  G +P+ +TY  +I+ L  +  ++ A  + +E+  + 
Sbjct: 354 ILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRA 412



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 95/209 (45%), Gaps = 10/209 (4%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII 144
           KA+ F +++     Y     S++  +    R  +      L+H++K     P   ++  +
Sbjct: 225 KAMAFLDLMVSRGCYPDI-VSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTV 283

Query: 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKF 203
            +    AGK   A+++   M   G +  + +++TI   LC+E ++E A   F KV     
Sbjct: 284 IDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGI 343

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
           + + + YN I  G C  + T+ A+++   M+  G  PN +TY I+++G    G I+EA  
Sbjct: 344 RPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARD 403

Query: 264 FFLEMKKRKCE--------IDVVTYTTIV 284
              E+  R  E        IDV   TT +
Sbjct: 404 LLDELCSRAGEEILLDVHLIDVAFLTTFL 432


>gi|147803305|emb|CAN75473.1| hypothetical protein VITISV_002797 [Vitis vinifera]
          Length = 1356

 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 122/437 (27%), Positives = 207/437 (47%), Gaps = 19/437 (4%)

Query: 63  PSLHWTPQLVDQIIK-----RLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLR 117
           P  +  P + D +I+      + ++A++      ++ +       PS +   + LA+ ++
Sbjct: 157 PLCNSIPSVFDLLIRVYLKEGMIDYAVETFELVGLVGF------KPSVYTCNMILASMVK 210

Query: 118 DYRT--VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS 175
           D RT  VW+L   M    + P   TF I+       G   +A  +   M E+G   ++ +
Sbjct: 211 DKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVT 270

Query: 176 FNTILDLLCKEKKVEKAYNL--FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           +NT+L+  CK+ + + A  L  + + +G  +ADV +YNV  +  C   R+ KA  +LK+M
Sbjct: 271 YNTLLNWYCKKGRYKAAIELIDYMICKG-IEADVCTYNVFIDNLCTNHRSAKAYLLLKKM 329

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
               ++PN  TYN ++ G+ + G+I  A + F EM K     + VTY  ++ G   VG+ 
Sbjct: 330 RKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDF 389

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           + A  + D M   G+  +  TY  ++  LCK +  E A  + E M     +     Y V+
Sbjct: 390 EEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVL 449

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           I GLC  G ++ A++ VG M  D   P+V TY+ LI  FC  G I+   E+  +M     
Sbjct: 450 IDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGL 509

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGL 473
           + N   Y+ LI +     +  ++  A K+   M   G     FT N +++ L   G  G 
Sbjct: 510 VLNKIIYSTLIYNFC---QHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGE 566

Query: 474 AKEILRLQSRCGRLPRQ 490
           A++ L   SR G +P  
Sbjct: 567 AEKFLCHMSRIGLVPNS 583



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/390 (26%), Positives = 179/390 (45%), Gaps = 7/390 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   I+   R+ + ++   ++ RM    L   +  ++ +   +   G    A+K++  M
Sbjct: 480 TYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVM 539

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRT 223
           + +G      + N ++  LC++ K+ +A   L  + R     + I+Y+ I NG+  +   
Sbjct: 540 NCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDP 599

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
             A     +M+  G +P+  TY  +LKG  + G + EA +F   +      +D V Y T+
Sbjct: 600 LNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTL 659

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +      G +  A  +FD MV   VLP   TY++++  LC+K     A+ +F   +G+G 
Sbjct: 660 LAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGT 719

Query: 344 M-PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
           + PN   Y  ++ GL   G  + A  F   M      P+   +N +I      G++ +  
Sbjct: 720 LFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKAN 779

Query: 403 ELFEKM-GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
           + F  M   GVC PNL TYNIL+   F +K++  LL    L   M+  G  P K TF+ +
Sbjct: 780 DFFSTMRWWGVC-PNLATYNILLHG-FSKKQA--LLRYLSLYSTMMREGIFPDKLTFHSL 835

Query: 462 LNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           + GL   G   L  ++L      G L  QF
Sbjct: 836 ILGLSKSGIPDLGVKLLGKMIMEGTLADQF 865



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 174/374 (46%), Gaps = 6/374 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++D  I+    + D    ++    M      P+  T+  + +     G    A K    +
Sbjct: 585 TYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRL 644

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
           H          +NT+L   CK   + +A  LF K+ +     D  +Y+ +  G C   + 
Sbjct: 645 HYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKA 704

Query: 224 NKALEVLKEMVDRG-LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
             A+ +    + RG L PN   Y  ++ G  +AG  + A+ FF EM K+    D V +  
Sbjct: 705 VTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNA 764

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           I+      G++ +A + F  M   GV P++ATYN ++    KK ++   + ++  M+ +G
Sbjct: 765 IIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREG 824

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
             P+  T++ +I GL  +G  +  ++ +G+M  +    +  T+NILI  + ++G++ +  
Sbjct: 825 IFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAF 884

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           +L   M +    P+ DTYN + + +    K      +  +L EM++ G +P+   +  ++
Sbjct: 885 DLVNFMNTLGVFPDRDTYNHIFNGL---NKKSAFRESTVVLHEMLENGVIPKHAQYITLI 941

Query: 463 NGLLLIGN-QGLAK 475
           NG+  +G+ QG  K
Sbjct: 942 NGMCRVGDIQGAFK 955



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 151/340 (44%), Gaps = 4/340 (1%)

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186
           + M    L P   T+  +   +   G  + A+++   M   G R +  ++ T+L+ LCK 
Sbjct: 362 NEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKH 421

Query: 187 KKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
           +K E A  L +  R        I+Y V+ +G C     ++A++++  M   G+NP++ TY
Sbjct: 422 EKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITY 481

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           + ++ G+ R G I+ A      M +    ++ + Y+T+++ F   G +  A  V+  M  
Sbjct: 482 SSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNC 541

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G      T N ++  LC+   +  A      M   G +PNS TY+ +I G    G+   
Sbjct: 542 NGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLN 601

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           A  F   M      P+  TY  L++  C  G +    +   ++       +   YN L++
Sbjct: 602 AFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLA 661

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
                 KS +L  A  L  +MV    +P  +T++ +L GL
Sbjct: 662 ETC---KSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGL 698



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 153/370 (41%), Gaps = 7/370 (1%)

Query: 100 AHSPSSFDHAIDLAARLRDYR--TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRA 157
            H    F   + +++  RD +       +  M  + L P   T+  I   Y S G    A
Sbjct: 543 GHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNA 602

Query: 158 VKIFLSMHEHGCRQSLNSFNTILDLLCKEKK-VEKAYNLFKVFRGKFKADVISYNVIANG 216
              F  M + G   S  ++ ++L  LCK    VE    L ++       D + YN +   
Sbjct: 603 FSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAE 662

Query: 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF-LEMKKRKCEI 275
            C     ++A+ +  +MV   + P+  TY+ +L G  R G+   A   F   M +     
Sbjct: 663 TCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFP 722

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
           + V YT +V G    G  K A   F+ M+  G  P    +NA+I    ++  +  A   F
Sbjct: 723 NHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFF 782

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
             M   G  PN  TYN+++ G      + R L     M  +   P+  T++ LI     +
Sbjct: 783 STMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKS 842

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
           G  + G++L  KM     L +  T+NILI+      +S  +  A  L+  M   G  P +
Sbjct: 843 GIPDLGVKLLGKMIMEGTLADQFTFNILINKY---SESGKMRKAFDLVNFMNTLGVFPDR 899

Query: 456 FTFNRVLNGL 465
            T+N + NGL
Sbjct: 900 DTYNHIFNGL 909



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 166/383 (43%), Gaps = 7/383 (1%)

Query: 71   LVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMK 130
            LVD + K    H   A +FF  +    T   +  +F+  ID  +R             M+
Sbjct: 730  LVDGLSKA--GHPKAAFYFFEEMMKKGTCPDT-VAFNAIIDSCSRRGQMMKANDFFSTMR 786

Query: 131  SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190
               + P   T+ I+   +       R + ++ +M   G      +F++++  L K    +
Sbjct: 787  WWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPD 846

Query: 191  KAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL 249
                L  K+      AD  ++N++ N +    +  KA +++  M   G+ P+  TYN + 
Sbjct: 847  LGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIF 906

Query: 250  KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
             G  +     E+     EM +         Y T+++G   VG+I+ A  + D M   G  
Sbjct: 907  NGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFG 966

Query: 310  PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
                  +AM++ L      E+A+LV + M+    +P   T+  ++   C   ++  AL+ 
Sbjct: 967  SHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKL 1026

Query: 370  VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
             G M+    + +V  YN+LI   C  G+     EL+E+M      PN+ TY +L+ ++  
Sbjct: 1027 KGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAI-- 1084

Query: 430  RKKSDDLLVAGKLLIEMVDRGFM 452
               +++L+   KLL ++ +RG +
Sbjct: 1085 -SAANNLIQGEKLLTDLQERGLI 1106


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 108/386 (27%), Positives = 192/386 (49%), Gaps = 4/386 (1%)

Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           A+   + +  I+   R R     ++ + ++  L   P   TF  +       G+   AV+
Sbjct: 122 AYDLYTLNIMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVE 181

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWC 218
           +   M        L + NTI++ LC + +V +A +L  ++     + +  +Y  I N  C
Sbjct: 182 LVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMC 241

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
               T  AL++L++M  R + P++ TY I++    + G++++A  FF EM+ +  + +V 
Sbjct: 242 KSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVF 301

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TY +++  F   G       +   M+   + P+V T++A+I  L K+  +  A  ++ EM
Sbjct: 302 TYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEM 361

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
           + +G  PN+ TYN +I GLC+   ++ A + +  M    C+P++ TYNILI  FC A ++
Sbjct: 362 ITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQV 421

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           + G+ LF KM     + +  TY+ LI      +K   L+VA K+  EMV +G  P   T+
Sbjct: 422 DDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRK---LIVAKKVFQEMVSQGVHPGIMTY 478

Query: 459 NRVLNGLLLIGNQGLAKEILRLQSRC 484
             +L+GL   G    A  IL    +C
Sbjct: 479 AILLDGLCDNGELEEALGILDQMHKC 504



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 170/342 (49%), Gaps = 4/342 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+ RM +    P Q T+  I  R   +G    A+ +   M     +  + ++  I+D LC
Sbjct: 217 LIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLC 276

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K+ +++ A + F     K  KA+V +YN +   +C   R +   ++L++M+ R + PN+ 
Sbjct: 277 KDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVV 336

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           T++ ++    + G++ EA   + EM  R  E + +TY ++++G      +  A  + D M
Sbjct: 337 TFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLM 396

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           V+ G  P + TYN +I   CK   V++ + +F +M  +G + ++ TY+ +I+G C + ++
Sbjct: 397 VSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKL 456

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             A +    M      P + TY IL+   CD GE+E  L + ++M       ++  YNI+
Sbjct: 457 IVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNII 516

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           I  M    K DD   A  L   +  +G      ++N +L+GL
Sbjct: 517 IHGMCNANKVDD---AWSLFCSLPSKGVKRDIQSYNIMLSGL 555



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 169/328 (51%), Gaps = 6/328 (1%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-- 197
           T+  +   + S G+ D   ++   M       ++ +F+ ++D L KE K+ +A +L+   
Sbjct: 302 TYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEM 361

Query: 198 VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
           + RG  + + I+YN +  G C  KR ++A +++  MV +G +P++ TYNI++ G+ +A Q
Sbjct: 362 ITRG-IEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQ 420

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           +++  R F +M  R    D VTY+T++ GF    ++  A+ VF  MV+ GV P + TY  
Sbjct: 421 VDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAI 480

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           ++  LC    +E A+ + ++M       +   YN++I G+C+  +++ A      +    
Sbjct: 481 LLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKG 540

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
            + ++Q+YNI++   C    +     LF KM      P+  TYN LI +     + +D+ 
Sbjct: 541 VKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIRAHL---RGNDIT 597

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            + +L+ EM   GF     T   V++ L
Sbjct: 598 TSVQLIEEMKRCGFSSDASTVKIVMDML 625



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 172/359 (47%), Gaps = 18/359 (5%)

Query: 53  PRTLTQTLHCPSLHWTPQLVDQI--IKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAI 110
           P  +T T+   +L    +L D +     +    +KA    N+ +Y+     S  SF    
Sbjct: 263 PHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKA----NVFTYNSLIG-SFCSFGRWD 317

Query: 111 DLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCR 170
           D A  LRD          M +  + P   TF+ + +  V  GK   A  ++  M   G  
Sbjct: 318 DGAQLLRD----------MITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIE 367

Query: 171 QSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEV 229
            +  ++N+++  LC +K++++A  +  +   K    D+ +YN++ NG+C  K+ +  + +
Sbjct: 368 PNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRL 427

Query: 230 LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289
            ++M  RG+  +  TY+ +++G+ ++ ++  A + F EM  +     ++TY  ++ G   
Sbjct: 428 FRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCD 487

Query: 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
            GE++ A  + D M    +   +  YN +I  +C  + V++A  +F  +  KG   +  +
Sbjct: 488 NGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQS 547

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           YN+++ GLC    +  A     +MK+D  EP+  TYN LIR      +I   ++L E+M
Sbjct: 548 YNIMLSGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIRAHLRGNDITTSVQLIEEM 606



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 151/309 (48%), Gaps = 7/309 (2%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F   ID   +         L + M +  + P   T+  +     +  + D A ++   M
Sbjct: 337 TFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLM 396

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKR 222
              GC   + ++N +++  CK K+V+    LF+    RG   AD ++Y+ +  G+C  ++
Sbjct: 397 VSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMI-ADTVTYSTLIQGFCQSRK 455

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
              A +V +EMV +G++P + TY I+L G    G++EEA     +M K K E+D+  Y  
Sbjct: 456 LIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNI 515

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           I+HG     ++  A ++F  + + GV   + +YN M+  LCK+ S+  A  +F +M   G
Sbjct: 516 IIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDG 575

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
           Y P+  TYN +IR      ++  +++ +  MK      +  T  I++     +GE+++  
Sbjct: 576 YEPDGCTYNTLIRAHLRGNDITTSVQLIEEMKRCGFSSDASTVKIVMDML-SSGELDKS- 633

Query: 403 ELFEKMGSG 411
             F  M SG
Sbjct: 634 --FLNMLSG 640



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 145/291 (49%), Gaps = 4/291 (1%)

Query: 188 KVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
           K + A  LF+ + R +    VI +N +       K+ +  L + K+M  +G+  +L T N
Sbjct: 70  KKDDAVALFQSMLRSRPLPTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYTLN 129

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
           I++  + R  ++  A+    ++ K   E + VT+ T+++G  + G +  A  + D MV  
Sbjct: 130 IMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLS 189

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
             +P + T N ++  LC KD V  A+ +   M+  G  PN  TY  ++  +C +G    A
Sbjct: 190 QHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASA 249

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
           L+ + +M+  + +P+V TY I+I   C  G ++  L  F +M +     N+ TYN LI S
Sbjct: 250 LDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGS 309

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
                + DD     +LL +M+ R   P   TF+ +++ L+  G    AK++
Sbjct: 310 FCSFGRWDD---GAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDL 357



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 77/202 (38%), Gaps = 40/202 (19%)

Query: 292 EIKR--ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
           +IK+  A  +F  M+    LP+V  +N +  +L +    +  + + ++M  KG   +  T
Sbjct: 68  DIKKDDAVALFQSMLRSRPLPTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYT 127

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
            N++I   C   ++  A   +G++     EPN  T+N L+   C  G +   +EL +   
Sbjct: 128 LNIMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVD--- 184

Query: 410 SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
              C                                MV    +P   T N ++NGL L  
Sbjct: 185 ---C--------------------------------MVLSQHVPDLITLNTIVNGLCLKD 209

Query: 470 NQGLAKEILRLQSRCGRLPRQF 491
               A +++      G  P QF
Sbjct: 210 RVSEAVDLIARMMANGCQPNQF 231


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 109/396 (27%), Positives = 186/396 (46%), Gaps = 38/396 (9%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           R     L  +  T+ ++   + +A   D A  +   M   G + +  + + IL  LC+  
Sbjct: 15  RENPCQLPASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCG 74

Query: 188 KVEKAYNLFKVFR--GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG-LNPNLTT 244
           +V +A   F         + DV+SY  + NG C + R + A ++ ++MV  G   PN  T
Sbjct: 75  RVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFT 134

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           YN ++ G  +  +++ A     E +KR    DVVTY T++     +G +  A   F  M 
Sbjct: 135 YNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMT 194

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
             G +P++ ++NA+I  LC+   + +A+ VF EM+ + + PN  TY+VVI GLC + +++
Sbjct: 195 EEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLD 254

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
            A + + RM  + C P++  Y  L+  F  AG ++  L L  +M S  C+P++ TY ++I
Sbjct: 255 EAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVI 314

Query: 425 SSMFVRKKSDDL------LVA--------------------------GKLLIEMVDRGFM 452
             +    + DD       LVA                          GK++ EM  R   
Sbjct: 315 DKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREMACR--- 371

Query: 453 PRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           P   T+N ++ GL ++     A  + R  S CG +P
Sbjct: 372 PNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVP 407



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/352 (28%), Positives = 154/352 (43%), Gaps = 43/352 (12%)

Query: 109 AIDLAARLRDYRTVWTLVHRMKSLSLG---PTQKTFAIIAERYVSAGKADRAVKIFLSM- 164
           +I L    R  R    L H   SL L    P   ++  +       G+ D A  +F  M 
Sbjct: 64  SIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMV 123

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYN------------ 211
              GCR +  ++N ++D LCK+ +++ A  +    R + F  DV++YN            
Sbjct: 124 AAGGCRPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRV 183

Query: 212 -----------------------VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
                                   I  G C  +R   ALEV  EM+DR  +PNL TY++V
Sbjct: 184 DEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVV 243

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           + G  ++ Q++EA +    M    C  D+V YT +V GF   G +  A  +   MV+ G 
Sbjct: 244 IDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGC 303

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
           +P V TY  +I  LCK   V++A  +F E+V     PN  TY+ +I G C    ++   +
Sbjct: 304 IPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGK 363

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
               M++  C PNV TYN +I         E    +F +M     +P+  TY
Sbjct: 364 V---MREMACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTY 412



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 155/326 (47%), Gaps = 40/326 (12%)

Query: 191 KAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250
           +A  LF+    +  A  ++YNV+  G+C     + A  +L+EM   G+  N  T +I+L+
Sbjct: 9   QALQLFRENPCQLPASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQ 68

Query: 251 GYFRAGQIEEAWRFF-LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV-NGGV 308
           G  R G++ +A   F   ++    + DVV+YTT+++G   +G +  A ++F  MV  GG 
Sbjct: 69  GLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGC 128

Query: 309 LPSVATYNAMIQVLCKKD-----------------------------------SVENAIL 333
            P+  TYNA++  LCK+D                                    V+ A+ 
Sbjct: 129 RPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALA 188

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
            F +M  +GY+P   ++N +I GLC    +  ALE    M D +  PN+ TY+++I   C
Sbjct: 189 TFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLC 248

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
            + +++   +L ++M S  C P+L  Y  L+       + D  L    LL  MV +G +P
Sbjct: 249 KSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSAL---GLLRRMVSQGCIP 305

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILR 479
              T+  V++ L  +G    A EI R
Sbjct: 306 DVVTYTVVIDKLCKVGRVDDAHEIFR 331



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 129/277 (46%), Gaps = 7/277 (2%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           RL   R V T     +     P   T+  +       G+ D A+  F  M E G   +L 
Sbjct: 147 RLDAARAVIT---EARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLV 203

Query: 175 SFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           SFN I+  LC+ +++  A  +F ++    F  ++++Y+V+ +G C   + ++A ++L  M
Sbjct: 204 SFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRM 263

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           V  G  P+L  Y  ++ G+  AG+++ A      M  + C  DVVTYT ++     VG +
Sbjct: 264 VSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRV 323

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
             A  +F  +V     P+V TY+A+I   C+   V+    V  EM  +   PN  TYN +
Sbjct: 324 DDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREMACR---PNVVTYNTM 380

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           I GL      E A      M +    P+ +TY  L R
Sbjct: 381 IWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGLKR 417



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 93/199 (46%), Gaps = 11/199 (5%)

Query: 86  ALHFFNIL---SYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           AL  FN +    +HP       ++   ID   +         L+ RM S    P    + 
Sbjct: 221 ALEVFNEMIDRDFHPNLV----TYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYT 276

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRG 201
            +   + +AG+ D A+ +   M   GC   + ++  ++D LCK  +V+ A+ +F+ +   
Sbjct: 277 PLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVAN 336

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
           K   +V++Y+ +  G+C   R ++  +V++EM  R   PN+ TYN ++ G     + EEA
Sbjct: 337 KCSPNVVTYSALIGGYCRASRVDEGGKVMREMACR---PNVVTYNTMIWGLSMVDRNEEA 393

Query: 262 WRFFLEMKKRKCEIDVVTY 280
           +  F EM +     D  TY
Sbjct: 394 YGMFREMSECGFVPDARTY 412


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 180/361 (49%), Gaps = 4/361 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S+   I+   ++ + + V  L+  M+   L P   T+  +       GK   A ++   M
Sbjct: 290 SYSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREM 349

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
              G       + T++D  CK   V  AY LF ++ + K   D I+Y  +  G C   R 
Sbjct: 350 ISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRV 409

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A ++  EMV + L P+  TY  ++ GY + G+++EA+    +M +     ++VTYT +
Sbjct: 410 MEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTAL 469

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
             G    GE+  A  +   M   G+  ++ TYN+++  LCK  +++ A+ + ++M   G+
Sbjct: 470 ADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGF 529

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P++ TY  ++   C + EM RA E + +M D E +P V T+N+L+  FC +G +E G +
Sbjct: 530 HPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEK 589

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           L + M     +PN  TYN LI    +R   +++    ++   M  +G +P   T+N ++ 
Sbjct: 590 LLKWMLEKGIMPNATTYNSLIKQYCIR---NNMRATTEIYRGMCAKGVVPDGNTYNILIK 646

Query: 464 G 464
           G
Sbjct: 647 G 647



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 111/369 (30%), Positives = 176/369 (47%), Gaps = 41/369 (11%)

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF--KVFRGKFKADVISYNVIA 214
           A+K+F+   E G   +  S+N I   LC+  +V +A+ L      RG    DVISY+ + 
Sbjct: 237 ALKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCI-PDVISYSTVI 295

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV-------------------------- 248
           NG+C V    + L++++EM  +GL PN  TYN V                          
Sbjct: 296 NGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIA 355

Query: 249 ---------LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
                    + G+ + G +  A+R F EM+KRK   D +TYT ++ G    G +  A  +
Sbjct: 356 PDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKL 415

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
           F  MV   + P   TY A+I   CK+  ++ A  +  +M+  G  PN  TY  +  GLC 
Sbjct: 416 FHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCK 475

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419
            GE++ A E +  M     E N+ TYN L+   C AG I++ ++L + M      P+  T
Sbjct: 476 CGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVT 535

Query: 420 YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           Y  L+ +     KS +++ A +LL +M+DR   P   TFN ++NG  + G     +++L+
Sbjct: 536 YTTLMDAYC---KSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLK 592

Query: 480 LQSRCGRLP 488
                G +P
Sbjct: 593 WMLEKGIMP 601



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 178/354 (50%), Gaps = 4/354 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   +++ +   Y   G+  R +K+   M   G + +  ++N ++ LLCK  KV +A  +
Sbjct: 286 PDVISYSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERV 345

Query: 196 FK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            + +       D + Y  + +G+C +   + A  +  EM  R ++P+  TY  V+ G  +
Sbjct: 346 LREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQ 405

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G++ EA + F EM  ++ E D VTYT ++ G+   G++K A ++ + M+  G+ P++ T
Sbjct: 406 TGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVT 465

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y A+   LCK   V+ A  +  EM  KG   N  TYN ++ GLC  G +++A++ +  M+
Sbjct: 466 YTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDME 525

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
                P+  TY  L+  +C + E+ R  EL  +M      P + T+N+L++   +    +
Sbjct: 526 VAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLE 585

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           D     KLL  M+++G MP   T+N ++    +  N     EI R     G +P
Sbjct: 586 D---GEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVP 636



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 174/355 (49%), Gaps = 12/355 (3%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID   +L +  + + L   M+   + P   T+  +       G+   A K+F   HE  C
Sbjct: 365 IDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLF---HEMVC 421

Query: 170 RQ---SLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNK 225
           ++      ++  ++D  CKE K+++A++L  ++ +     ++++Y  +A+G C     + 
Sbjct: 422 KRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDT 481

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
           A E+L EM  +GL  N+ TYN ++ G  +AG I++A +   +M+      D VTYTT++ 
Sbjct: 482 ANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMD 541

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
            +    E+ RA  +   M++  + P+V T+N ++   C    +E+   + + M+ KG MP
Sbjct: 542 AYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMP 601

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           N+TTYN +I+  C    M    E    M      P+  TYNILI+  C A  ++    L 
Sbjct: 602 NATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLH 661

Query: 406 EKM-GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
             M G G  L  + +YN LI   + RKK    L A +L  +M   G +  +  +N
Sbjct: 662 RDMVGKGFNL-TVSSYNALIKGFYKRKK---FLEARELFEQMRREGLVADREIYN 712



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 149/300 (49%), Gaps = 1/300 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L H M    L P + T+  + + Y   GK   A  +   M + G   ++ ++  + D LC
Sbjct: 415 LFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLC 474

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  +V+ A  L  ++ R   + ++ +YN + NG C     ++A++++K+M   G +P+  
Sbjct: 475 KCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAV 534

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY  ++  Y ++ ++  A     +M  R+ +  VVT+  +++GF + G ++    +   M
Sbjct: 535 TYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWM 594

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           +  G++P+  TYN++I+  C ++++     ++  M  KG +P+  TYN++I+G C    M
Sbjct: 595 LEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNM 654

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A      M        V +YN LI+ F    +     ELFE+M     + + + YNI 
Sbjct: 655 KEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIF 714



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 160/318 (50%), Gaps = 1/318 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   ID   +    +  ++L ++M  + L P   T+  +A+     G+ D A ++   M
Sbjct: 430 TYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEM 489

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRT 223
              G   ++ ++N++++ LCK   +++A  L K      F  D ++Y  + + +C  +  
Sbjct: 490 CRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREM 549

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A E+L++M+DR L P + T+N+++ G+  +G +E+  +    M ++    +  TY ++
Sbjct: 550 VRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSL 609

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +  + +   ++    ++ GM   GV+P   TYN +I+  CK  +++ A  +  +MVGKG+
Sbjct: 610 IKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGF 669

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
               ++YN +I+G     +   A E   +M+ +    + + YNI      D G++E  LE
Sbjct: 670 NLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKMELTLE 729

Query: 404 LFEKMGSGVCLPNLDTYN 421
           L ++      + ++ T N
Sbjct: 730 LCDEAIEKCLVGDIQTKN 747



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 120/261 (45%), Gaps = 7/261 (2%)

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA-GQIEEAWRFFLEMKKRKCEIDVVTYTT 282
           ++A ++  +M++ GL  ++ + N+ +         I+ A + F+E  +     +  +Y  
Sbjct: 199 DEARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKVFVEFPEVGVCWNTASYNI 258

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           I H    +G +  A  +   M   G +P V +Y+ +I   C+   ++  + + EEM  KG
Sbjct: 259 ITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLIEEMQIKG 318

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
             PN  TYN VI  LC TG++  A   +  M  +   P+   Y  LI  FC  G +    
Sbjct: 319 LKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAY 378

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
            LF++M      P+  TY  +I  +    ++  ++ A KL  EMV +   P + T+  ++
Sbjct: 379 RLFDEMQKRKISPDFITYTAVICGLC---QTGRVMEADKLFHEMVCKRLEPDEVTYTALI 435

Query: 463 NGLLLIGNQGLAKEILRLQSR 483
           +G      +G  KE   L ++
Sbjct: 436 DGYC---KEGKMKEAFSLHNQ 453



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 147/314 (46%), Gaps = 42/314 (13%)

Query: 185 KEKKVEKAYNLFKVFRGKFKADVI---------SYNVIAN--GWCLVKR----------- 222
           K+++ E    + K +  KF+AD +          Y ++ +   W  ++R           
Sbjct: 74  KQRRSEPLRRVLKPYESKFRADHLIWVLMNIKNDYRLVLSFFEWACLRRDPSLEARCIVA 133

Query: 223 ----TNKALEVLKEMV-DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
                +K L++ ++++ D  +NPNL     V  G+F    +E+    + +        D+
Sbjct: 134 QIATASKDLKMARKLIQDFWVNPNLDVG--VSFGHF----VEQLIYTYKDWGSDPRVFDI 187

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK-DSVENAILVFE 336
             +  +V      G +  AR +FD M+N G+L SV + N  I  L +  D ++ A+ VF 
Sbjct: 188 F-FQVLVEA----GMLDEARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKVFV 242

Query: 337 EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
           E    G   N+ +YN++   LC  G +  A + + +M+   C P+V +Y+ +I  +C  G
Sbjct: 243 EFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVG 302

Query: 397 EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
           E++R L+L E+M      PN  TYN +I    +  K+  +  A ++L EM+  G  P   
Sbjct: 303 ELQRVLKLIEEMQIKGLKPNPYTYNGVI---LLLCKTGKVAEAERVLREMISEGIAPDGV 359

Query: 457 TFNRVLNGLLLIGN 470
            +  +++G   +GN
Sbjct: 360 IYTTLIDGFCKLGN 373


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 180/353 (50%), Gaps = 23/353 (6%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +FD  I+   ++  ++    +V  MK+    P+  T+  I + Y  AGK  +A  +   M
Sbjct: 231 TFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEM 290

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRT 223
                  +  +FN ++D  C+++ V  A  +F+   R   + +V++YN + NG C   + 
Sbjct: 291 VAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKL 350

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           ++AL +  +M   GL PN+ TYN ++ G+ +   ++EA     ++ KR    +V+T+ T+
Sbjct: 351 DEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTL 410

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +  +G  G +  A  +   M++ GV P+V+TYN +I   C++ +V+ A  + +EM G G 
Sbjct: 411 IDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGL 470

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE---PNVQTYNILIRYFCDAGEIER 400
             +  TYN+++  LC  GE  +A+  +  M   E +    N+ TYN+LI+ FC+ G++E 
Sbjct: 471 KADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEE 530

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
              L  +M     +PN  TY+IL                     EM+++GF+P
Sbjct: 531 ANRLLNEMLEKGLIPNRTTYDILRD-------------------EMMEKGFIP 564



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 107/373 (28%), Positives = 182/373 (48%), Gaps = 22/373 (5%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQK---------------TFAIIAERYVS 150
           FD A D   RL        LV  +K   +G  +                TF ++      
Sbjct: 182 FDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCK 241

Query: 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVIS 209
            GK  +A  +   M   G   S+ ++NTI+D  CK  K+ KA  L K    K    + I+
Sbjct: 242 VGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEIT 301

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           +N++ +G+C  +    A +V +EM  +GL PN+ TYN ++ G    G+++EA     +M 
Sbjct: 302 FNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMS 361

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
               + +VVTY  +++GF     +K AR + D +   G+ P+V T+N +I    K   ++
Sbjct: 362 GMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMD 421

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
           +A L+   M+  G  PN +TYN +I G C  G ++ A +    M+ +  + ++ TYNIL+
Sbjct: 422 DAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILV 481

Query: 390 RYFCDAGEIERGLELFEKMG---SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
              C  GE  + + L ++M          N+ TYN+LI     + K ++   A +LL EM
Sbjct: 482 DALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEE---ANRLLNEM 538

Query: 447 VDRGFMPRKFTFN 459
           +++G +P + T++
Sbjct: 539 LEKGLIPNRTTYD 551



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 99/310 (31%), Positives = 165/310 (53%), Gaps = 10/310 (3%)

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           +F+ +++ LCK  K +KA ++ +  +   F   VI+YN I +G+C   +  KA  +LKEM
Sbjct: 231 TFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEM 290

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           V + ++PN  T+NI++ G+ R   +  A + F EM+++  + +VVTY ++++G    G++
Sbjct: 291 VAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKL 350

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
             A  + D M   G+ P+V TYNA+I   CKK  ++ A  + +++  +G  PN  T+N +
Sbjct: 351 DEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTL 410

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           I      G M+ A      M D    PNV TYN LI  FC  G ++   +L ++M     
Sbjct: 411 IDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGL 470

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV---DRGFMPRKFTFNRVLNGLLLIGN 470
             +L TYNIL+ ++    K  +   A +LL EM     +G      T+N ++ G     N
Sbjct: 471 KADLVTYNILVDALC---KKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFC---N 524

Query: 471 QGLAKEILRL 480
           +G  +E  RL
Sbjct: 525 KGKLEEANRL 534



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 167/344 (48%), Gaps = 24/344 (6%)

Query: 91  NILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERY 148
           +++     +  SPS  +++  ID   +         L+  M +  + P + TF I+ + +
Sbjct: 250 DVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGF 309

Query: 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADV 207
                   A K+F  M   G + ++ ++N++++ LC   K+++A  L     G   K +V
Sbjct: 310 CRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNV 369

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           ++YN + NG+C  K   +A E+L ++  RGL PN+ T+N ++  Y +AG++++A+     
Sbjct: 370 VTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSM 429

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M       +V TY  ++ GF   G +K AR +   M   G+   + TYN ++  LCKK  
Sbjct: 430 MLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGE 489

Query: 328 VENAILVFEEMV---GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
              A+ + +EM     KG   N  TYNV+I+G C+ G++E A   +  M +    PN  T
Sbjct: 490 TRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTT 549

Query: 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT--YNILISS 426
           Y+IL     + G I                P++D   YN+ ISS
Sbjct: 550 YDILRDEMMEKGFI----------------PDIDGHLYNVSISS 577



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 81/250 (32%), Positives = 126/250 (50%), Gaps = 5/250 (2%)

Query: 217 WCLVK--RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
           W  VK    + ALE      D G   +  + N +L    + G+I      + EM +R+  
Sbjct: 167 WAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIG 226

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
           ++VVT+  +++G   VG+ ++A +V + M   G  PSV TYN +I   CK   +  A  +
Sbjct: 227 VNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADAL 286

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
            +EMV K   PN  T+N++I G C    +  A +    M+    +PNV TYN LI   C 
Sbjct: 287 LKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCS 346

Query: 395 AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
            G+++  L L +KM      PN+ TYN LI+  F +KK   L  A ++L ++  RG  P 
Sbjct: 347 NGKLDEALGLQDKMSGMGLKPNVVTYNALING-FCKKKM--LKEAREMLDDIGKRGLAPN 403

Query: 455 KFTFNRVLNG 464
             TFN +++ 
Sbjct: 404 VITFNTLIDA 413


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 117/453 (25%), Positives = 197/453 (43%), Gaps = 63/453 (13%)

Query: 63  PSLHWTPQLVDQIIK-----RLWN--HALKALHFFNILSYHPTYAHSPSSFDHAIDLAAR 115
           P+  W  QL+ ++ +     R W+  H L  L                +S +  +    R
Sbjct: 268 PNSIWLTQLISRLCRSGRTDRAWDVLHGLMKL----------GGVMEAASCNALLTALGR 317

Query: 116 LRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH---------- 165
            R+++ + TL+  MK + + P   TF I+        + D A+++F  M+          
Sbjct: 318 AREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVE 377

Query: 166 -------------------EHG------------CRQSLNSFNTILDLLCKEKKVEKAYN 194
                              E G            C  +  ++N ++D  CK   +E A  
Sbjct: 378 PDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARE 437

Query: 195 LF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
           LF ++ +     +V++ N + +G C   R N A+E   EM  +GL  N  TY  +++ + 
Sbjct: 438 LFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFC 497

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
               IE+A   F EM +  C  D + Y T++ G    G++ RA  V   M   G  P + 
Sbjct: 498 NVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIV 557

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           ++N +I   C+K+ ++ A  + +EM   G  P+  TYN +I     TG+   A   + +M
Sbjct: 558 SFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKM 617

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL-PNLDTYNILISSMFVRKK 432
             +   P V TY  LI  +C  G ++  +++F  M S   + PN   YNILI+S+  RK 
Sbjct: 618 VKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSL-CRKN 676

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
             DL ++  L+ +M  +G  P   TFN +  GL
Sbjct: 677 QVDLALS--LMDDMKVKGVKPNTNTFNAMFKGL 707



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 159/337 (47%), Gaps = 38/337 (11%)

Query: 125 LVHRMKSLS-LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           LV RM+S     P   T+  + + Y  A   + A ++F  M++ G   ++ + NT++D +
Sbjct: 402 LVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGM 461

Query: 184 CKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMV-------- 234
           CK  ++  A   F   +GK  K + ++Y  +   +C V    KA+E+  EM+        
Sbjct: 462 CKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDA 521

Query: 235 ----------------DR-----------GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
                           DR           G +P++ ++N+++ G+ R  +++EA+    E
Sbjct: 522 IVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKE 581

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M+    + D VTY T++  F   G+   A  +   MV  G++P+V TY A+I   C   +
Sbjct: 582 MENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGN 641

Query: 328 VENAILVFEEMVGKGYMP-NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
           ++ A+ +F +M     +P N+  YN++I  LC   +++ AL  +  MK    +PN  T+N
Sbjct: 642 LDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFN 701

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
            + +   +   + +  EL ++M    C P+  T  IL
Sbjct: 702 AMFKGLQEKNWLSKAFELMDRMTEHACNPDYITMEIL 738



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 142/276 (51%), Gaps = 2/276 (0%)

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186
           + M+   L     T+  +   + +    ++A+++F  M E GC      + T++  L + 
Sbjct: 475 NEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQA 534

Query: 187 KKVEKA-YNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
            K+++A + L K+    F  D++S+NV+ NG+C   + ++A E+LKEM + G+ P+  TY
Sbjct: 535 GKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTY 594

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           N ++  + + G    A R   +M K      VVTY  ++H + + G +  A  +F  M +
Sbjct: 595 NTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSS 654

Query: 306 GG-VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
              V P+   YN +I  LC+K+ V+ A+ + ++M  KG  PN+ T+N + +GL     + 
Sbjct: 655 TSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLS 714

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           +A E + RM +  C P+  T  IL  +    GE  +
Sbjct: 715 KAFELMDRMTEHACNPDYITMEILTEWLSAVGETAK 750



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 114/444 (25%), Positives = 182/444 (40%), Gaps = 57/444 (12%)

Query: 62  CPS---LHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAI-------- 110
           CPS    H    L+D + ++       ALH  + +   P     P+S    I        
Sbjct: 186 CPSRRLTHIRNILIDVLFRK--GRVDDALHLLDEM-LQPKAEFPPNSNTGHIVFSALSKR 242

Query: 111 DLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCR 170
           D   R  D   +  LV +     + P       +  R   +G+ DRA  +   + + G  
Sbjct: 243 DKVGRAVDEEEIVGLVSKFAEHEVFPNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGV 302

Query: 171 QSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVL 230
               S N +L  L + ++                                KR N  L  +
Sbjct: 303 MEAASCNALLTALGRAREF-------------------------------KRMNTLLAEM 331

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC-----EIDVVTYTTIVH 285
           KEM    + PN+ T+ I++    +  +++EA   F +M   +      E DV+TY T++ 
Sbjct: 332 KEM---DIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLID 388

Query: 286 GFGVVGEIKRARNVFDGMVNGG-VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
           G   VG  +    + + M +    +P+  TYN +I   CK   +E A  +F++M   G  
Sbjct: 389 GLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVP 448

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           PN  T N ++ G+C  G +  A+EF   M+    + N  TY  LIR FC+   IE+ +EL
Sbjct: 449 PNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMEL 508

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           F++M    C P+   Y  LIS +    K D    A  +L +M + GF P   +FN ++NG
Sbjct: 509 FDEMLEAGCSPDAIVYYTLISGLSQAGKLDR---ASFVLSKMKEAGFSPDIVSFNVLING 565

Query: 465 LLLIGNQGLAKEILRLQSRCGRLP 488
                    A E+L+     G  P
Sbjct: 566 FCRKNKLDEAYEMLKEMENAGIKP 589



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 107/436 (24%), Positives = 183/436 (41%), Gaps = 32/436 (7%)

Query: 76  IKRLWNHALKALHFFNILSYHPTYAHSP-------SSFDHAIDLAARLRDYRTVWTLVHR 128
           I RL     KAL FFN +  +     SP       + F+HA   +     +  +  L   
Sbjct: 93  ITRLLGSTAKALKFFNWVQANSPCQDSPLLSFTLEAVFEHA---SREPNSHNKLLDLFKT 149

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSF-NTILDLLCKEK 187
            KS  + P     A +  R    G+A    + FL  +E    + L    N ++D+L ++ 
Sbjct: 150 SKSHKI-PLSVNAATLLIRCF--GRAQMVDESFLVYNELCPSRRLTHIRNILIDVLFRKG 206

Query: 188 KVEKAYNLFKVF---RGKFKADVISYNVIANGWCLVKRTNKALE------VLKEMVDRGL 238
           +V+ A +L       + +F  +  + +++ +      +  +A++      ++ +  +  +
Sbjct: 207 RVDDALHLLDEMLQPKAEFPPNSNTGHIVFSALSKRDKVGRAVDEEEIVGLVSKFAEHEV 266

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
            PN      ++    R+G+ + AW     + K    ++  +   ++   G   E KR   
Sbjct: 267 FPNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNT 326

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG---KGYM--PNSTTYNVV 353
           +   M    + P+V T+  +I  LCK   V+ A+ VFE+M G    G++  P+  TYN +
Sbjct: 327 LLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTL 386

Query: 354 IRGLCHTGEMERALEFVGRMKDD-ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           I GLC  G  E  L  V RM+    C PN  TYN LI  +C A  IE   ELF++M    
Sbjct: 387 IDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDG 446

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
             PN+ T N L+  M    + +    A +   EM  +G      T+  ++     + N  
Sbjct: 447 VPPNVVTLNTLVDGMCKHGRING---AVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIE 503

Query: 473 LAKEILRLQSRCGRLP 488
            A E+       G  P
Sbjct: 504 KAMELFDEMLEAGCSP 519



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/215 (19%), Positives = 90/215 (41%), Gaps = 4/215 (1%)

Query: 92  ILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149
           +LS       SP   SF+  I+   R       + ++  M++  + P   T+  +   + 
Sbjct: 543 VLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFS 602

Query: 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG--KFKADV 207
             G    A ++   M + G   ++ ++  ++   C    +++A  +F+      K   + 
Sbjct: 603 KTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNT 662

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           + YN++ N  C   + + AL ++ +M  +G+ PN  T+N + KG      + +A+     
Sbjct: 663 VIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDR 722

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
           M +  C  D +T   +      VGE  + ++   G
Sbjct: 723 MTEHACNPDYITMEILTEWLSAVGETAKLKSFVQG 757


>gi|147827256|emb|CAN64312.1| hypothetical protein VITISV_027954 [Vitis vinifera]
          Length = 655

 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 127/467 (27%), Positives = 204/467 (43%), Gaps = 78/467 (16%)

Query: 9   PKNHLHFFCIYRGLSPLTTT-SPAPLPPAAADPAA--LASLILTSTDPRTLTQTLHCPSL 65
           P++   F CI   L P T + S  P  P   +P +  + S   TS D  T+ QTL C + 
Sbjct: 242 PRHRNSFRCIQTLLYPFTQSFSTKPFKPIEPEPLSNPIISPNSTSFDHSTVRQTLSCYAN 301

Query: 66  HWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTL 125
            W                 +AL FF+ +     + H+  +++  ID+  +  ++  +W L
Sbjct: 302 DWK----------------RALEFFDWVQTQCGFNHTTDTYNGMIDILGKFFEFDLIWVL 345

Query: 126 VHRMKSLSLG-PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           + RMK+  +  P   TF  + +RY +A   + A+  +    E   R    S++ ++D LC
Sbjct: 346 IQRMKADPVAYPNHVTFRFVFKRYAAAHLVEEAMNAYYRTEEFNLRDE-TSYSNLIDALC 404

Query: 185 KEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
           + K V +A  LF                                 LKE  D   N ++  
Sbjct: 405 EYKHVIEAEELF---------------------------------LKESKDLVFNDDVKI 431

Query: 245 YNIVLKGYFRAGQIEEA-----WR---FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           YNI+L+G+F+ G +EE      WR    + EMKK+   +DVV Y T++   G+   +  +
Sbjct: 432 YNIILRGWFKNGVVEECKSGKPWRAVKLYKEMKKKGIRLDVVAYNTVIRAIGLSEGVDFS 491

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
             VF      G  P+V TYN +I++LC+   +  A  VF++M  KGY PN  TY+     
Sbjct: 492 IRVFREXKEVGCEPNVVTYNTIIKLLCENGRIREAYGVFDQMREKGYAPNVITYH----- 546

Query: 357 LCHTGEMERA---LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
            C  G +E+    L    RM +    P + TY +L++ F   G +     +++KM    C
Sbjct: 547 -CFFGCIEKPKQILRTFDRMINSGVRPRMDTYVMLMKKFGRWGFLRPVFIVWKKMEEQGC 605

Query: 414 LPNLDTYNILISSM-------FVRKKSDDLLVAGKLLIEMVDRGFMP 453
            P+   YN LI ++         RK  +++L  G      VD G  P
Sbjct: 606 SPDACAYNALIDALVQKGMVDLARKYEEEMLAKGLSAKPRVDLGTKP 652


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 191/382 (50%), Gaps = 7/382 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S  +  D   +L      W     +      P    F ++  R     K + A  +F  +
Sbjct: 192 SCGYLFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEI 251

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRT 223
            + G R ++ SFNT+++  CK   +++ + L + +   +   DV +Y+V+ NG C   + 
Sbjct: 252 GKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQL 311

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A ++  EM DRGL PN  T+  ++ G+   G+ +     + +M ++  + DV+TY T+
Sbjct: 312 DDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTL 371

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++G   VG+++ A+ +   M   G+ P   TY  +I   CK+  +E+A+ + +EMV +G 
Sbjct: 372 INGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGI 431

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
             ++  +  +I G C  G++  A   +  M +   +P+  TY ++I  FC  G+++ G +
Sbjct: 432 ELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFK 491

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           L ++M     +P + TYN+L++ +    K   +  A  LL  M++ G +P   T+N +L 
Sbjct: 492 LLKEMQCDGHVPGVVTYNVLLNGLC---KQGQMKNANMLLDAMLNLGVVPDDITYNILLE 548

Query: 464 GLLLIGNQGLAKEILRLQSRCG 485
           G    GN+   ++  +LQS  G
Sbjct: 549 GHCKHGNR---EDFDKLQSEKG 567



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 99/315 (31%), Positives = 162/315 (51%), Gaps = 6/315 (1%)

Query: 176 FNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           FN ++  LCKE K+ +A  LF ++ +   +  V+S+N + NG+C     ++   + + M+
Sbjct: 228 FNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMM 287

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
           +  + P++ TY++++ G  + GQ+++A + FLEM  R    + VT+TT+++G  V G   
Sbjct: 288 ENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRAD 347

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
               ++  M+  GV P V TYN +I  LCK   +  A  +  EM  +G  P+  TY ++I
Sbjct: 348 LGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLI 407

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE-IERGLELFEKMGSGVC 413
            G C  G++E ALE    M  +  E +   +  LI  FC  G+ IE    L E + +G+ 
Sbjct: 408 DGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGI- 466

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGL 473
            P+  TY ++I       K  D+    KLL EM   G +P   T+N +LNGL   G    
Sbjct: 467 KPDDATYTMVIHGFC---KKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKN 523

Query: 474 AKEILRLQSRCGRLP 488
           A  +L      G +P
Sbjct: 524 ANMLLDAMLNLGVVP 538



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 157/327 (48%), Gaps = 22/327 (6%)

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNK 225
           +H  R S++S+ T+   LC  K + +A +L +         V+S           K  N 
Sbjct: 96  QHHFRLSIHSYCTMTHFLCTHKMLSEAQSLLQF--------VVSR----------KGKNS 137

Query: 226 ALEVLKEMVD-RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           A  V   +++ RG + +   +++++  Y  +G   +A + F  ++K   +I   +   + 
Sbjct: 138 ASSVFTSVLEARGTHQSNLVFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLF 197

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
                +     A   ++ +++ G  P V  +N ++  LCK+  +  A L+F E+  +G  
Sbjct: 198 DRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLR 257

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           P   ++N +I G C +G +++       M ++   P+V TY++LI   C  G+++   +L
Sbjct: 258 PTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKL 317

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           F +M     +PN  T+  LI+   V  ++D   +  ++  +M+ +G  P   T+N ++NG
Sbjct: 318 FLEMCDRGLVPNDVTFTTLINGHCVTGRAD---LGMEIYQQMLRKGVKPDVITYNTLING 374

Query: 465 LLLIGNQGLAKEILRLQSRCGRLPRQF 491
           L  +G+   AK+++   ++ G  P +F
Sbjct: 375 LCKVGDLREAKKLVIEMTQRGLKPDKF 401


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 112/420 (26%), Positives = 193/420 (45%), Gaps = 39/420 (9%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  + L  +L    TVW L   M  L +  T  TF I+       GK  +A     SM
Sbjct: 203 TFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSM 262

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR---------------------GKF 203
              G + ++ ++NT++   C   +VE A  +  + +                     GK 
Sbjct: 263 ENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKL 322

Query: 204 KA---------------DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
           +                  ++YN + +G+C      KA     EMV R + P ++TYN++
Sbjct: 323 EEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLL 382

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           +   F  G+++EA     +M       D +TY  +++G+   G  K+A N+ D M++ G+
Sbjct: 383 IHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGI 442

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
            P++ TY ++I VL K++ ++ A  +FE+++ +G  P+   +N +I G C  G ++RA  
Sbjct: 443 QPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFA 502

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
            +  M      P+  TYN L++  C  G++E   EL ++M      P+  +YN LIS   
Sbjct: 503 LLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYS 562

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            R   +D   A  +  EM+  GF P   T+N ++ GL       LA+E+L+     G  P
Sbjct: 563 KRGDIND---AFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITP 619



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 168/339 (49%), Gaps = 4/339 (1%)

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYN 211
           + D A + F  M E G    + +FN +L L  K  + E  + L+ ++FR K K+ V ++N
Sbjct: 181 RGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFN 240

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
           ++ N  C   +  KA + +  M + G+ PN+ TYN V+ GY   G++E A      MK R
Sbjct: 241 IMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNR 300

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
             E D  TY +++ G    G+++ A  + + M   G+LP+  TYN +I   C K  +  A
Sbjct: 301 GVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKA 360

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
               +EMV +  +P  +TYN++I  L   G+M+ A   +  M D    P+  TYNILI  
Sbjct: 361 FGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILING 420

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
           +C  G  ++   L ++M S    P L TY  LI   +V  K + +  A  L  +++  G 
Sbjct: 421 YCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLI---YVLSKRNRMKAADDLFEKIIREGA 477

Query: 452 MPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
            P    FN +++G    GN   A  +L+   +   +P +
Sbjct: 478 SPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDE 516



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/384 (27%), Positives = 182/384 (47%), Gaps = 4/384 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           FD  I     L+     +     MK   + P  +TF  +   ++   + +    ++  M 
Sbjct: 169 FDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMF 228

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTN 224
               + ++ +FN ++++LCKE K++KA +          K +V++YN + +G+C   R  
Sbjct: 229 RLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVE 288

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
            A  VL  M +RG+ P+  TY  ++ G  + G++EEA     +MK+       VTY T++
Sbjct: 289 GARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLI 348

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            G+   G++ +A    D MV   +LP+V+TYN +I  L  +  ++ A  + ++M   G +
Sbjct: 349 DGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIV 408

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           P+S TYN++I G C  G  ++A      M     +P + TY  LI        ++   +L
Sbjct: 409 PDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDL 468

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           FEK+      P+L  +N LI         D    A  LL EM  R  +P + T+N ++ G
Sbjct: 469 FEKIIREGASPDLIMFNALIDGHCANGNLDR---AFALLKEMDKRNIVPDEVTYNTLMQG 525

Query: 465 LLLIGNQGLAKEILRLQSRCGRLP 488
               G    A+E+L+   R G  P
Sbjct: 526 RCREGKVEEARELLKEMKRRGIRP 549



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 82/263 (31%), Positives = 142/263 (53%), Gaps = 3/263 (1%)

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           I ++++    C +KR + A E    M ++G+ P + T+N +L  + +  Q E  W  + E
Sbjct: 167 IVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAE 226

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M + K +  V T+  +++     G++K+A++    M N GV P+V TYN +I   C +  
Sbjct: 227 MFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGR 286

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
           VE A +V + M  +G  P+S TY  +I G+C  G++E A   + +MK+    P   TYN 
Sbjct: 287 VEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNT 346

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           LI  +C+ G++ +     ++M     LP + TYN+LI ++F+  K D+   A  ++ +M 
Sbjct: 347 LIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDE---ADGMIKDMG 403

Query: 448 DRGFMPRKFTFNRVLNGLLLIGN 470
           D G +P   T+N ++NG    GN
Sbjct: 404 DSGIVPDSITYNILINGYCRCGN 426



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 130/243 (53%), Gaps = 1/243 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++  M    + P   T+ I+   Y   G A +A  +   M   G + +L ++ +++ +L 
Sbjct: 398 MIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLS 457

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  +++ A +LF K+ R     D+I +N + +G C     ++A  +LKEM  R + P+  
Sbjct: 458 KRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEV 517

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN +++G  R G++EEA     EMK+R    D ++Y T++ G+   G+I  A  + D M
Sbjct: 518 TYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEM 577

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           ++ G  P++ TYNA+IQ LCK    + A  + +EMV KG  P+ +TY  +I G+    + 
Sbjct: 578 LSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSLIEGIGKVDDS 637

Query: 364 ERA 366
             A
Sbjct: 638 SEA 640



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 143/304 (47%), Gaps = 1/304 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++ +MK + L PT  T+  + + Y + G   +A      M       +++++N ++  L 
Sbjct: 328 ILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALF 387

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            E K+++A  + K +       D I+YN++ NG+C      KA  +  EM+ +G+ P L 
Sbjct: 388 LEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLV 447

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY  ++    +  +++ A   F ++ +     D++ +  ++ G    G + RA  +   M
Sbjct: 448 TYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEM 507

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
               ++P   TYN ++Q  C++  VE A  + +EM  +G  P+  +YN +I G    G++
Sbjct: 508 DKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDI 567

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             A      M      P + TYN LI+  C   + +   EL ++M S    P+  TY  L
Sbjct: 568 NDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSL 627

Query: 424 ISSM 427
           I  +
Sbjct: 628 IEGI 631



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 3/178 (1%)

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           S   ++ +I+  C+    ++A   F+ M  KG +P   T+N ++       + E      
Sbjct: 165 SSIVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLY 224

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
             M   + +  V T+NI+I   C  G++++  +    M +    PN+ TYN +I     R
Sbjct: 225 AEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSR 284

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            + +    A  +L  M +RG  P  +T+  +++G+   G    A  IL      G LP
Sbjct: 285 GRVEG---ARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLP 339


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/408 (26%), Positives = 196/408 (48%), Gaps = 27/408 (6%)

Query: 106 FDHAIDLAARLRD---YRTVWT-------------------LVHRMKSLSLGPTQKTFAI 143
            D A+DL  +++D   + TV T                   LV  M+   + P   T+ +
Sbjct: 304 IDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTV 363

Query: 144 IAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-K 202
           + +   S  K ++A ++   M E G   ++ ++N +++  CK   +E A ++ ++    K
Sbjct: 364 LIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRK 423

Query: 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262
              +  +YN +  G+C     +KA+ VL +M++R + P++ TYN ++ G  R+G  + A+
Sbjct: 424 LSPNTRTYNELIKGYC-KSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAY 482

Query: 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322
           R    M  R    D  TYT+++        ++ A ++FD +   GV P+V  Y A+I   
Sbjct: 483 RLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGY 542

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
           CK   V+ A L+ E+M+ K  +PNS T+N +I GLC  G+++ A     +M     +P V
Sbjct: 543 CKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTV 602

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
            T  ILI      G+ +     F++M S    P+  TY   I + + R+    LL A  +
Sbjct: 603 STDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQT-YCREGR--LLDAEDM 659

Query: 443 LIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
           + +M + G  P  FT++ ++ G   +G    A ++L+     G  P Q
Sbjct: 660 MAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQ 707



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 125/455 (27%), Positives = 219/455 (48%), Gaps = 35/455 (7%)

Query: 53  PRTLTQTLHCPSLHWTPQLVDQI-------IKRLWNHALK---ALHFFNILSYHPTYAHS 102
           P  L   L  P+ H +P L   +       +  L++  L    AL+F + +S +P Y HS
Sbjct: 63  PHRLLSILSKPNWHKSPSLKSMVSAISPSHVSSLFSLDLDPKTALNFSHWISQNPRYKHS 122

Query: 103 PSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFL 162
             S             Y ++ TL+  + +  +G   K   ++ +   S G A   + +  
Sbjct: 123 VYS-------------YASLLTLL--INNGYVGVVFKIRLLMIKSCDSVGDALYVLDLCR 167

Query: 163 SMH-----EHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANG 216
            M+     E   +  +  +NT+L+ L +   V++   ++ ++   K   ++ +YN + NG
Sbjct: 168 KMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNG 227

Query: 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID 276
           +C +    +A + + ++V+ GL+P+  TY  ++ GY +   ++ A++ F EM  + C  +
Sbjct: 228 YCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRN 287

Query: 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE 336
            V YT ++HG  V   I  A ++F  M +    P+V TY  +I+ LC  +    A+ + +
Sbjct: 288 EVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVK 347

Query: 337 EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
           EM   G  PN  TY V+I  LC   + E+A E +G+M +    PNV TYN LI  +C  G
Sbjct: 348 EMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRG 407

Query: 397 EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
            IE  +++ E M S    PN  TYN LI          ++  A  +L +M++R  +P   
Sbjct: 408 MIEDAVDVVELMESRKLSPNTRTYNELIKGYC----KSNVHKAMGVLNKMLERKVLPDVV 463

Query: 457 TFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           T+N +++G    GN   A  +L L +  G +P Q+
Sbjct: 464 TYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQW 498



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 184/375 (49%), Gaps = 17/375 (4%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           +V  M+S  L P  +T+  + + Y  +    +A+ +   M E      + ++N+++D  C
Sbjct: 415 VVELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQC 473

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           +    + AY L  +   +    D  +Y  + +  C  KR  +A ++   +  +G+NPN+ 
Sbjct: 474 RSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVV 533

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            Y  ++ GY +AG+++EA     +M  + C  + +T+  ++HG    G++K A  + + M
Sbjct: 534 MYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKM 593

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           V  G+ P+V+T   +I  L K    ++A   F++M+  G  P++ TY   I+  C  G +
Sbjct: 594 VKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRL 653

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             A + + +M+++   P++ TY+ LI+ + D G+     ++ ++M    C P+  T+  L
Sbjct: 654 LDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSL 713

Query: 424 ISSMFV-----RKKSDDLLVAG----------KLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
           I  +       +K S+  L A           +LL +MV+    P   ++ +++ G+  +
Sbjct: 714 IKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEV 773

Query: 469 GNQGLAKEILRLQSR 483
           GN  +A+++     R
Sbjct: 774 GNLRVAEKVFDHMQR 788



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/402 (21%), Positives = 180/402 (44%), Gaps = 25/402 (6%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   R  ++ + + L+  M    L P Q T+  + +    + + + A  +F S+
Sbjct: 464 TYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSL 523

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
            + G   ++  +  ++D  CK  KV++A+ +  K+       + +++N + +G C   + 
Sbjct: 524 EQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKL 583

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A  + ++MV  GL P ++T  I++    + G  + A+  F +M     + D  TYTT 
Sbjct: 584 KEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTF 643

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +  +   G +  A ++   M   GV P + TY+++I+          A  V + M   G 
Sbjct: 644 IQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGC 703

Query: 344 MPNSTTYNVVIR------------------GLCHTGEMERALEFVGRMKDDECEPNVQTY 385
            P+  T+  +I+                   + +  E +  +E + +M +    PN ++Y
Sbjct: 704 EPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSY 763

Query: 386 NILIRYFCDAGEIERGLELFEKM--GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
             LI   C+ G +    ++F+ M    G+  P+   +N L+S     KK ++   A K++
Sbjct: 764 EKLILGICEVGNLRVAEKVFDHMQRNEGIS-PSELVFNALLSCCCKLKKHNE---AAKVV 819

Query: 444 IEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
            +M+  G +P+  +   ++ GL   G +     + +   +CG
Sbjct: 820 DDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCG 861



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 139/320 (43%), Gaps = 20/320 (6%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L  +M  + L PT  T  I+  R +  G  D A   F  M   G +   +++ T +   C
Sbjct: 589 LEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYC 648

Query: 185 KEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           +E ++  A ++    R      D+ +Y+ +  G+  + +TN A +VLK M D G  P+  
Sbjct: 649 REGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQH 708

Query: 244 TYNIVLK-------GYFRAGQIE-------EAWRFFLEMKKRKCEIDVV----TYTTIVH 285
           T+  ++K       G  +  + E         +   +E+ ++  E  V     +Y  ++ 
Sbjct: 709 TFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLIL 768

Query: 286 GFGVVGEIKRARNVFDGMV-NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
           G   VG ++ A  VFD M  N G+ PS   +NA++   CK      A  V ++M+  G++
Sbjct: 769 GICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHL 828

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           P   +  V+I GL   GE ER       +       +   + I+I      G +E   EL
Sbjct: 829 PQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYEL 888

Query: 405 FEKMGSGVCLPNLDTYNILI 424
           F  M    C  +  TY++LI
Sbjct: 889 FNVMEKNGCKFSSQTYSLLI 908



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/219 (20%), Positives = 97/219 (44%), Gaps = 22/219 (10%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSA--GKA----------------DRAVKIFLSM 164
           + ++ RM+     P+Q TF  + +  +    GK                 D  V++   M
Sbjct: 692 FDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKM 751

Query: 165 HEHGCRQSLNSFNTILDLLCKE---KKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVK 221
            EH    +  S+  ++  +C+    +  EK ++  +   G   ++++ +N + +  C +K
Sbjct: 752 VEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELV-FNALLSCCCKLK 810

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
           + N+A +V+ +M+  G  P L +  +++ G ++ G+ E     F  + +     D + + 
Sbjct: 811 KHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWK 870

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
            I+ G G  G ++    +F+ M   G   S  TY+ +I+
Sbjct: 871 IIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIE 909



 Score = 45.4 bits (106), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 73/176 (41%), Gaps = 4/176 (2%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH-GCRQS 172
           + + ++ TV  L+ +M   S+ P  K++  +       G    A K+F  M  + G   S
Sbjct: 736 SNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPS 795

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVL 230
              FN +L   CK KK  +A  +    +  G     + S  V+  G        +   V 
Sbjct: 796 ELVFNALLSCCCKLKKHNEAAKVVDDMICVGHL-PQLESCKVLICGLYKKGEKERGTSVF 854

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
           + ++  G   +   + I++ G  + G +E  +  F  M+K  C+    TY+ ++ G
Sbjct: 855 QNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIEG 910


>gi|302757477|ref|XP_002962162.1| hypothetical protein SELMODRAFT_76220 [Selaginella moellendorffii]
 gi|300170821|gb|EFJ37422.1| hypothetical protein SELMODRAFT_76220 [Selaginella moellendorffii]
          Length = 484

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 119/456 (26%), Positives = 203/456 (44%), Gaps = 79/456 (17%)

Query: 69  PQLVDQIIKRLWNHALKALHFFNILSYHPTYAHS-------------------------- 102
           P+LV  +I+R+ + AL A  FF+  S    Y H                           
Sbjct: 11  PRLVGSVIRRVPSLAL-ARKFFDWSSKQEGYRHDVYCYTRLLHHLVRARRTREAVRFFKR 69

Query: 103 -------PS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGK 153
                  PS  SF   I     +R+    W  +  M+SL + P    + ++ + Y   G+
Sbjct: 70  ELCAHCRPSLYSFTIIIQCFCNVRNPGRAWRYLGYMRSLGIPPDVTAYNVVLKGYCDLGR 129

Query: 154 ADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF----------------- 196
             RA+  F  M +  C+ ++ ++NT+++ LCK  K++ A +LF                 
Sbjct: 130 VGRALIKFGKMGKT-CKPNVATYNTVINGLCKFGKIDWAVHLFTRLPHDLVDPDGFTYST 188

Query: 197 ---------------KVF----RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
                          KV+       +  D  +YN +A+G+C  +R ++ALEVLK M+ RG
Sbjct: 189 LVHGLCQAERLEAAIKVYDMMLEANYDGDAGAYNAMADGFCKERRVDEALEVLKTMIQRG 248

Query: 238 LNPNLTTYNIVLKGYFR-AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
             P++ TYN ++ G  +   +IEEA+R F +M    C  + VTY T++ G   + E++R 
Sbjct: 249 CKPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILGLSKIYEVQRC 308

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
             +F GM   G+ P    Y+++I    K   ++ A  + ++       P+   Y  +I G
Sbjct: 309 LELFKGMSKAGLSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPDVYMYTTLISG 368

Query: 357 LCHTGE--MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
            C   +  ++ AL     MKD    PNV TYNI++R  C  G  +   ++F++M    C 
Sbjct: 369 YCRARKPRVDEALLLFQNMKDRRVWPNVITYNIVLRGLCKTGRFDEAYQIFQEMFKVKCS 428

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450
           PN  T+ ++   M    K+D      ++ ++MV +G
Sbjct: 429 PNRMTFKVMTMGMIHCGKTDKF---ERIFMDMVYKG 461


>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Glycine max]
          Length = 1024

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 112/406 (27%), Positives = 186/406 (45%), Gaps = 61/406 (15%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           ++    ++ RM+S+S  P   T+ I+    +  G+  R  +I   M   GC  +   FN+
Sbjct: 288 FQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNS 347

Query: 179 ILDLLCKEKKVEKAYNLFK---------------VFRG------------------KFKA 205
           ++   CK +    AY LFK               +F G                  K  +
Sbjct: 348 LVHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIFIGSICSNEELPGSDLLELAEKAYS 407

Query: 206 DVISYNVIANG---------WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256
           +++   V+ N           C   + +KA E++ EM+ +G  P+ +TY+ V+     A 
Sbjct: 408 EMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDAS 467

Query: 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
           ++E+A+  F EMKK      V TYT ++  F   G I++ARN FD M+     P+V TY 
Sbjct: 468 KVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYT 527

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK-- 374
           ++I    K   V +A  +FE M+ +G  PN  TY  +I G C  G++++A +   RM+  
Sbjct: 528 SLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKACQIYARMQGD 587

Query: 375 -------------DDECE-PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
                        D++CE PN+ TY  L+   C A  +E   EL + M    C PN   Y
Sbjct: 588 IESSDIDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVY 647

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
           + LI       K+  L  A ++ ++M +RG+ P  +T++ ++N L 
Sbjct: 648 DALIDGFC---KTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLF 690



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 185/400 (46%), Gaps = 26/400 (6%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           S++   I            + L   MK   + P+  T+ I+ + +  AG   +A   F  
Sbjct: 454 STYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDE 513

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVK 221
           M    C  ++ ++ +++    K +KV  A  LF+  +  G  K +V++Y  + +G C   
Sbjct: 514 MLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGS-KPNVVTYTALIDGHCKAG 572

Query: 222 RTNKALEVLKEM--------VDRGL--------NPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           + +KA ++   M        +D            PN+ TY  ++ G  +A ++EEA    
Sbjct: 573 QIDKACQIYARMQGDIESSDIDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHELL 632

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
             M    CE + + Y  ++ GF   G+++ A+ VF  M   G  P++ TY+++I  L K+
Sbjct: 633 DTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFKE 692

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
             ++  + V  +M+     PN   Y  +I GLC  G+ E A   + +M++  C PNV TY
Sbjct: 693 KRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNVITY 752

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
             +I  F   G+IE+ LEL+  M S  C PN  TY +LI+       S  LL     L++
Sbjct: 753 TAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVLINHCC----STGLLDEAHRLLD 808

Query: 446 MVDRGFMPRKF-TFNRVLNGL--LLIGNQGLAKEILRLQS 482
            + + + PR   ++ +++ G     I + GL  E+   +S
Sbjct: 809 EMKQTYWPRHISSYRKIIEGFNREFITSIGLLDELSENES 848



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 169/386 (43%), Gaps = 55/386 (14%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMH---------------EHGCRQ-SLNSFNTI 179
           P   T+  + + +  AG+ D+A +I+  M                ++ C   ++ ++  +
Sbjct: 556 PNVVTYTALIDGHCKAGQIDKACQIYARMQGDIESSDIDMYFKLDDNDCETPNIITYGAL 615

Query: 180 LDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           +D LCK  +VE+A+ L         + + I Y+ + +G+C   +   A EV  +M +RG 
Sbjct: 616 VDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGY 675

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
            PNL TY+ ++   F+  +++   +   +M +  C  +VV YT ++ G   VG+ + A  
Sbjct: 676 CPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYR 735

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
           +   M   G  P+V TY AMI    K   +E  + ++ +M  KG  PN  TY V+I   C
Sbjct: 736 LMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVLINHCC 795

Query: 359 HTGEMERALEFVGRMK---------------------------------DDECEPNVQTY 385
            TG ++ A   +  MK                                 ++E  P    Y
Sbjct: 796 STGLLDEAHRLLDEMKQTYWPRHISSYRKIIEGFNREFITSIGLLDELSENESVPVESLY 855

Query: 386 NILIRYFCDAGEIERGLELFEKMGS--GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
            ILI  F  AG +E  L L E++ S   + + N   Y  LI S+    K D    A +L 
Sbjct: 856 RILIDNFIKAGRLEGALNLLEEISSSPSLAVANKYLYTSLIESLSHASKVDK---AFELY 912

Query: 444 IEMVDRGFMPRKFTFNRVLNGLLLIG 469
             M+++  +P   TF  ++ GL  +G
Sbjct: 913 ASMINKNVVPELSTFVHLIKGLTRVG 938



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 161/396 (40%), Gaps = 47/396 (11%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           R+K      +  T+  + + ++ A K D A  +   M   G R    +       LCK  
Sbjct: 195 RLKDFGYKASPTTYNALIQVFLRADKLDTAFLVHREMSNSGFRMDGCTLGCFAYSLCKAG 254

Query: 188 KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           +   A +L +  + +F  D + YN + +G C      +A+++L  M      PN+ TY I
Sbjct: 255 RCGDALSLLE--KEEFVPDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIPNVVTYRI 312

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           +L G    GQ+    R    M    C  +   + ++VH +    +   A  +F  M+  G
Sbjct: 313 LLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCG 372

Query: 308 VLPSVATYNAMIQVLCKKDSV--------------------------------------- 328
             P    YN  I  +C  + +                                       
Sbjct: 373 CQPGYLLYNIFIGSICSNEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAG 432

Query: 329 --ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
             + A  +  EM+ KG++P+ +TY+ VI  LC   ++E+A      MK +   P+V TY 
Sbjct: 433 KFDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYT 492

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
           ILI  FC AG I++    F++M    C PN+ TY  LI +    +K  D   A KL   M
Sbjct: 493 ILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFD---ANKLFEMM 549

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL-RLQ 481
           +  G  P   T+  +++G    G    A +I  R+Q
Sbjct: 550 LLEGSKPNVVTYTALIDGHCKAGQIDKACQIYARMQ 585



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 155/350 (44%), Gaps = 40/350 (11%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+  + +    A + + A ++  +M  +GC  +   ++ ++D  CK  K+E A  +
Sbjct: 607 PNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEV 666

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F K+    +  ++ +Y+ + N     KR +  L+VL +M++    PN+  Y  ++ G  +
Sbjct: 667 FVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCK 726

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G+ EEA+R  L+M++  C  +V+TYT ++ GFG +G+I++   ++  M + G  P+  T
Sbjct: 727 VGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFIT 786

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y  +I   C    ++ A  + +EM    +  + ++Y  +I G     E   ++  +  + 
Sbjct: 787 YRVLINHCCSTGLLDEAHRLLDEMKQTYWPRHISSYRKIIEGF--NREFITSIGLLDELS 844

Query: 375 DDECEPNVQTYNILIRYFCDAGEIE----------------------------------- 399
           ++E  P    Y ILI  F  AG +E                                   
Sbjct: 845 ENESVPVESLYRILIDNFIKAGRLEGALNLLEEISSSPSLAVANKYLYTSLIESLSHASK 904

Query: 400 --RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
             +  EL+  M +   +P L T+  LI  +    K  + L     + +MV
Sbjct: 905 VDKAFELYASMINKNVVPELSTFVHLIKGLTRVGKWQEALQLSDSICQMV 954



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 114/260 (43%), Gaps = 9/260 (3%)

Query: 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
           N +    C     N ALE L  + D G   + TTYN +++ + RA +++ A+    EM  
Sbjct: 174 NFLIQKCCRNGMWNVALEELGRLKDFGYKASPTTYNALIQVFLRADKLDTAFLVHREMSN 233

Query: 271 RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
               +D  T     +     G    A ++ +       +P    YN M+  LC+    + 
Sbjct: 234 SGFRMDGCTLGCFAYSLCKAGRCGDALSLLE---KEEFVPDTVFYNRMVSGLCEASLFQE 290

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           A+ + + M     +PN  TY +++ G    G++ R    +  M  + C PN + +N L+ 
Sbjct: 291 AMDILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSLVH 350

Query: 391 YFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK---SDDLLVAGKLLIEMV 447
            +C + +     +LF+KM    C P    YNI I S+   ++   SD L +A K   EM+
Sbjct: 351 AYCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIFIGSICSNEELPGSDLLELAEKAYSEML 410

Query: 448 DRGFMPRKF---TFNRVLNG 464
           D G +  K     F R L G
Sbjct: 411 DLGVVLNKVNVSNFARCLCG 430



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 85/182 (46%), Gaps = 6/182 (3%)

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G   S  TYNA+IQV  + D ++ A LV  EM   G+  +  T       LC  G    A
Sbjct: 200 GYKASPTTYNALIQVFLRADKLDTAFLVHREMSNSGFRMDGCTLGCFAYSLCKAGRCGDA 259

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
           L     ++ +E  P+   YN ++   C+A   +  +++ ++M S  C+PN+ TY IL+S 
Sbjct: 260 LSL---LEKEEFVPDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIPNVVTYRILLSG 316

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGR 486
              + +   L    ++L  M+  G  P +  FN +++      +   A ++ +   +CG 
Sbjct: 317 CLGKGQ---LGRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCGC 373

Query: 487 LP 488
            P
Sbjct: 374 QP 375



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/283 (17%), Positives = 127/283 (44%), Gaps = 14/283 (4%)

Query: 56  LTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHF-FNILSYHPTYAHSPSS--FDHAIDL 112
           +++  +CP+L+    L++ + K       K L     +LS     + +P+   +   ID 
Sbjct: 670 MSERGYCPNLYTYSSLINSLFKE------KRLDLVLKVLSKMLENSCTPNVVIYTDMIDG 723

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
             ++      + L+ +M+ +   P   T+  + + +   GK ++ ++++  M   GC  +
Sbjct: 724 LCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPN 783

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFKVFRGKF-KADVISYNVIANGWCLVKRTNKALEVLK 231
             ++  +++  C    +++A+ L    +  +    + SY  I  G+   +    ++ +L 
Sbjct: 784 FITYRVLINHCCSTGLLDEAHRLLDEMKQTYWPRHISSYRKIIEGF--NREFITSIGLLD 841

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK--CEIDVVTYTTIVHGFGV 289
           E+ +    P  + Y I++  + +AG++E A     E+         +   YT+++     
Sbjct: 842 ELSENESVPVESLYRILIDNFIKAGRLEGALNLLEEISSSPSLAVANKYLYTSLIESLSH 901

Query: 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
             ++ +A  ++  M+N  V+P ++T+  +I+ L +    + A+
Sbjct: 902 ASKVDKAFELYASMINKNVVPELSTFVHLIKGLTRVGKWQEAL 944


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 170/314 (54%), Gaps = 4/314 (1%)

Query: 176 FNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           +NTI+D LCK K V  AY L+ ++   K   DV++++ +  G+C+V +  +A  + +EMV
Sbjct: 211 YNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMV 270

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
            + +NP+  T+NI++    + G ++ A    + M K     +VVTY++++ G+ +V ++ 
Sbjct: 271 LKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVN 330

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
           +A++V + +   G  P+  +Y  MI   CK   V+ A+ +F +M  KG  P+  TYN +I
Sbjct: 331 KAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLI 390

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
            GLC +G +  A E V  M D+    N+ TYN LI   C    +++ + L +K+      
Sbjct: 391 DGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQ 450

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           P++ T+NILI  +    K   L  A  +  +++ +G+    +T+N ++NGL   G    A
Sbjct: 451 PDMYTFNILIYGLC---KVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEA 507

Query: 475 KEILRLQSRCGRLP 488
           + +L      G +P
Sbjct: 508 EALLSKMDDNGIIP 521



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 169/345 (48%), Gaps = 4/345 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           ++  ID   + +     + L  +M +  + P   TF+ +   +   G+ + A  +F  M 
Sbjct: 211 YNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMV 270

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTN 224
                    +FN ++D LCKE  ++ A N+  V  +     +V++Y+ + +G+CLV + N
Sbjct: 271 LKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVN 330

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           KA  VL  +   G  PN  +Y  ++ G+ +   ++EA   F +M+ +    D VTY +++
Sbjct: 331 KAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLI 390

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            G    G I  A  + D M + G   ++ TYN +I  LCK   V+ AI + +++  +G  
Sbjct: 391 DGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQ 450

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           P+  T+N++I GLC  G ++ A +    +       N  TYNI++   C  G  +    L
Sbjct: 451 PDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEAL 510

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
             KM     +P+  TY  LI ++F + +++    A KLL EM+ R
Sbjct: 511 LSKMDDNGIIPDAVTYETLIQALFHKDENEK---AEKLLREMIAR 552



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 171/348 (49%), Gaps = 4/348 (1%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           Y T  +L  R++   + P   TF I+   Y    + + A  +   + + G      +FNT
Sbjct: 84  YPTAISLSRRLEFHGITPDIFTFNILINCYCHMAEMNFAFSMMAKILKMGYEPDTITFNT 143

Query: 179 ILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           ++  LC   KV++A +    V    F  D  SY  + NG C +  T  AL++L+++  + 
Sbjct: 144 LIKGLCLNGKVKEALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQMLRKIDGKL 203

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
           +  N+  YN ++    +   + +A+  + +M  +K   DVVT++ +++GF +VG+++ A 
Sbjct: 204 VKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAF 263

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
            +F  MV   + P   T+N ++  LCK+ +++ A  +   M+ +G MPN  TY+ ++ G 
Sbjct: 264 GLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGY 323

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
           C   ++ +A   +  +      PN  +Y  +I  FC    ++  L LF  M      P+ 
Sbjct: 324 CLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDK 383

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            TYN LI  +    KS  +  A +L+ EM D G     FT+N +++ L
Sbjct: 384 VTYNSLIDGLC---KSGRISYAWELVDEMHDNGQPANIFTYNCLIDAL 428



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 140/270 (51%), Gaps = 1/270 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  +D   +  + +    ++  M    + P   T++ + + Y    + ++A  +  ++
Sbjct: 280 TFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTI 339

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRT 223
            + G   + +S+ T+++  CK K V++A +LF   + K  A D ++YN + +G C   R 
Sbjct: 340 SQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRI 399

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A E++ EM D G   N+ TYN ++    +   +++A     ++K +  + D+ T+  +
Sbjct: 400 SYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNIL 459

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++G   VG +K A++VF  +++ G   +  TYN M+  LCK+   + A  +  +M   G 
Sbjct: 460 IYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGI 519

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           +P++ TY  +I+ L H  E E+A + +  M
Sbjct: 520 IPDAVTYETLIQALFHKDENEKAEKLLREM 549


>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
 gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
          Length = 847

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 123/435 (28%), Positives = 185/435 (42%), Gaps = 71/435 (16%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            LV  M +  + P   T+  +        K   A +    M   GC     ++NTI+D  
Sbjct: 171 ALVESMDAY-IAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGY 229

Query: 184 CKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           CK   +++A  L K  +F+G F  D ++Y  + NG C      +ALE+  E   + L P+
Sbjct: 230 CKRDMLQEATELLKDAIFKG-FVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPD 288

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           L  YN ++KG  R G I  A +   EM +  C  D+ TY  +++G   +G I  A  V +
Sbjct: 289 LVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMN 348

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILV--------------------------- 334
             +  G LP V T+N MI   CK+  +++A+ +                           
Sbjct: 349 DAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAG 408

Query: 335 --------FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
                   FEEM+ KG  PN+ TYN++I   C   ++E A   + RM  D   P+  ++N
Sbjct: 409 KAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFN 468

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS----------------MFVR 430
            LI  FC  G+++    LF+K+         DT+NILI +                M  +
Sbjct: 469 TLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISK 528

Query: 431 KKSDDL-----LVAGKL-----------LIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
               DL     LV G             L EMV +GF+P   TF RVLN L +      A
Sbjct: 529 GYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATFGRVLNSLAMNHRVSEA 588

Query: 475 KEILRLQSRCGRLPR 489
             I+ +  R G +P 
Sbjct: 589 VAIIHIMVRMGVVPE 603



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 109/390 (27%), Positives = 189/390 (48%), Gaps = 6/390 (1%)

Query: 82  HALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTF 141
           H   A H F+ +     +    ++F++ +    +  D      L+ ++    +   + T 
Sbjct: 95  HGYDARHLFDEMLRRDVFP-DVATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTC 153

Query: 142 AIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFR 200
            I        G+ + AV +  SM  +     + ++NT++  LCK+ KV++A   L ++  
Sbjct: 154 NIWIRGLCEGGRLEEAVALVESMDAY-IAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMN 212

Query: 201 GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
                D  +YN I +G+C      +A E+LK+ + +G  P+  TY  ++ G    G +E 
Sbjct: 213 QGCIPDDFTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVER 272

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
           A   F E + +  + D+V Y ++V G    G I  A  V + MV  G  P + TYN +I 
Sbjct: 273 ALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVIN 332

Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
            LCK  ++ +A +V  + + KGY+P+  T+N +I G C   +++ AL+ V RM      P
Sbjct: 333 GLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAP 392

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAG 440
           +  TYN ++   C AG+ +   E FE+M    C PN  TYNILI +     K + L  A 
Sbjct: 393 DAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFC---KINQLEEAS 449

Query: 441 KLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
            +++ M   G +P   +FN +++G    G+
Sbjct: 450 GVIVRMSQDGLVPDTISFNTLIHGFCRNGD 479



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 175/338 (51%), Gaps = 5/338 (1%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           RM S  + P  +T  +  + +   G+   A+++  S+ E GC     ++ T++  L    
Sbjct: 35  RMLSAGVAPDARTHTVRIKSFCITGRPHVALRLLRSLPERGCDVKPLAYCTVVRGLYAHG 94

Query: 188 KVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
               A +LF ++ R     DV ++N + +  C      ++  +L +++ RG++ N  T N
Sbjct: 95  HGYDARHLFDEMLRRDVFPDVATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCN 154

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
           I ++G    G++EEA      M       DVVTY T++ G     +++ A      M+N 
Sbjct: 155 IWIRGLCEGGRLEEAVALVESMDAYIAP-DVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQ 213

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G +P   TYN +I   CK+D ++ A  + ++ + KG++P+  TY  +I GLC  G++ERA
Sbjct: 214 GCIPDDFTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERA 273

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
           LE     +  + +P++  YN L++  C  G I   L++  +M    C P++ TYNI+I+ 
Sbjct: 274 LELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVING 333

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           +    K  ++  A  ++ + + +G++P  FTFN +++G
Sbjct: 334 LC---KMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDG 368



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 138/270 (51%), Gaps = 4/270 (1%)

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           +YN I +        ++A +V   M+  G+ P+  T+ + +K +   G+   A R    +
Sbjct: 12  AYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVALRLLRSL 71

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
            +R C++  + Y T+V G    G    AR++FD M+   V P VAT+N ++  LC+K  +
Sbjct: 72  PERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNVLHALCQKGDI 131

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
             +  +  +++ +G   N  T N+ IRGLC  G +E A+  V  M D    P+V TYN L
Sbjct: 132 MESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESM-DAYIAPDVVTYNTL 190

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           +R  C   +++   +   +M +  C+P+  TYN +I       K D L  A +LL + + 
Sbjct: 191 MRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYC---KRDMLQEATELLKDAIF 247

Query: 449 RGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           +GF+P + T+  ++NGL   G+   A E+ 
Sbjct: 248 KGFVPDRVTYCSLINGLCAEGDVERALELF 277



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 162/363 (44%), Gaps = 38/363 (10%)

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKR 222
           M   GC  +  ++N I+D L      ++A+ ++ ++       D  ++ V    +C+  R
Sbjct: 1   MDLFGCPPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGR 60

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
            + AL +L+ + +RG +     Y  V++G +  G   +A   F EM +R    DV T+  
Sbjct: 61  PHVALRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNN 120

Query: 283 IVHGFGVVGEI-----------KRARNV--------FDGMVNGG---------------V 308
           ++H     G+I           KR  +V          G+  GG               +
Sbjct: 121 VLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESMDAYI 180

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
            P V TYN +++ LCK   V+ A      M+ +G +P+  TYN +I G C    ++ A E
Sbjct: 181 APDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATE 240

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
            +         P+  TY  LI   C  G++ER LELF +  +    P+L  YN L+  + 
Sbjct: 241 LLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLC 300

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
              +   +L A +++ EMV+ G  P  +T+N V+NGL  +GN   A  ++      G LP
Sbjct: 301 ---RQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLP 357

Query: 489 RQF 491
             F
Sbjct: 358 DVF 360



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 113/242 (46%), Gaps = 1/242 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  ID   +     +   LV RM    + P   T+  +      AGKA    + F  M
Sbjct: 361 TFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEM 420

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRT 223
              GCR +  ++N +++  CK  ++E+A   + ++ +     D IS+N + +G+C     
Sbjct: 421 ILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDL 480

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A  + +++ ++G +    T+NI++  Y     ++ A + F EM  +  + D+ TY  +
Sbjct: 481 DGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVL 540

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           V G      + RA      MV+ G +PS+AT+  ++  L     V  A+ +   MV  G 
Sbjct: 541 VDGSCKAANVDRAYVHLAEMVSKGFVPSMATFGRVLNSLAMNHRVSEAVAIIHIMVRMGV 600

Query: 344 MP 345
           +P
Sbjct: 601 VP 602



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 117/253 (46%), Gaps = 9/253 (3%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+ I+ E +    + + A  + + M + G      SFNT++   C+   ++ AY L
Sbjct: 427 PNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLL 486

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F+    K + A   ++N++   +        A ++  EM+ +G  P+L TY +++ G  +
Sbjct: 487 FQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCK 546

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
           A  ++ A+    EM  +     + T+  +++   +   +  A  +   MV  GV+P V  
Sbjct: 547 AANVDRAYVHLAEMVSKGFVPSMATFGRVLNSLAMNHRVSEAVAIIHIMVRMGVVPEVVD 606

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
               I    KK+     ILV EE++ KG++ +  TY V+  G+       +A ++  R+ 
Sbjct: 607 ---TILSTDKKEIAAPKILV-EELMKKGHI-SYPTYEVLHEGVRDNKLTRKARKW--RLS 659

Query: 375 DDECEPNVQTYNI 387
           D +C  N  T+ I
Sbjct: 660 DPDCM-NTTTHGI 671


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 170/357 (47%), Gaps = 7/357 (1%)

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
            L P  K F ++    V  G+   A  +F  M   G R+++ SFNT++  +C+   ++ A
Sbjct: 235 GLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGA 294

Query: 193 YNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
             L + +       DV +Y  +  G C V R   A  V ++M  RG+ PN   + I++  
Sbjct: 295 ETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDA 354

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
           + + G  E       EM++R    D VTY  IV+G     ++K A  +   M + G+ P 
Sbjct: 355 HCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPD 414

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
             TY  +I   CK++ ++ A+ + + MV +G   +  TY  +I GL   G    A   +G
Sbjct: 415 TVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLG 474

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
            M +   EP+  TY ++I  FC  G+++ GL L ++M +    P + TYN++++      
Sbjct: 475 EMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFC--- 531

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           K   +  A  LL  M++ G  P   T+N +L+G       G   +I  L+S  G +P
Sbjct: 532 KLGQMKNADMLLNAMINIGVSPDDITYNILLDGHC---KHGKVTDIEELKSAKGTVP 585



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 124/251 (49%), Gaps = 4/251 (1%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            R+ D R V+    +M    + P    F I+ + +   G A+  +++   M E G R   
Sbjct: 324 GRIEDARGVF---EKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDA 380

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
            ++N I++ LC+ + ++ A  +    R    + D ++Y  + +G+C  +  + A+E+ + 
Sbjct: 381 VTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQN 440

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           MV  G+  +  TY  ++ G  +AG+  +A R   EM +   E D  TYT ++  F   G+
Sbjct: 441 MVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGD 500

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           +K    +   M N G  P V TYN ++   CK   ++NA ++   M+  G  P+  TYN+
Sbjct: 501 VKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNI 560

Query: 353 VIRGLCHTGEM 363
           ++ G C  G++
Sbjct: 561 LLDGHCKHGKV 571



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 124/247 (50%), Gaps = 3/247 (1%)

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
           +++D GL P    +N++++   R G++  A   F EM+ R     VV++ T++ G    G
Sbjct: 230 QLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAG 289

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
           ++  A  +   M   GV P V TY A+IQ LC+   +E+A  VFE+M G+G  PN+  + 
Sbjct: 290 DLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFT 349

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
           ++I   C  G+ E  LE    M++    P+  TYN ++   C A +++    +  +M S 
Sbjct: 350 ILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSA 409

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
              P+  TY  LI       K ++L +A ++   MV  G    + T+  +++GL   G  
Sbjct: 410 GLRPDTVTYTTLIDGYC---KEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRS 466

Query: 472 GLAKEIL 478
             A+ +L
Sbjct: 467 ADAERVL 473



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 3/205 (1%)

Query: 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319
           EA  F+L++       +   +  ++     +GE+  A+NVFD M + GV  +V ++N MI
Sbjct: 223 EACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMI 282

Query: 320 QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
             +C+   ++ A  +   M   G  P+  TY  +I+GLC  G +E A     +M     +
Sbjct: 283 SGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMK 342

Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA 439
           PN   + ILI   C  G+ E  LEL  +M      P+  TYN +++ +    ++ DL  A
Sbjct: 343 PNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLC---RARDLKSA 399

Query: 440 GKLLIEMVDRGFMPRKFTFNRVLNG 464
             +++EM   G  P   T+  +++G
Sbjct: 400 SGIVVEMRSAGLRPDTVTYTTLIDG 424


>gi|32489921|emb|CAE05513.1| OSJNBa0038P21.6 [Oryza sativa Japonica Group]
          Length = 648

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 118/397 (29%), Positives = 188/397 (47%), Gaps = 43/397 (10%)

Query: 123 WTLVHR-MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
           WT  H  M+ L L P+  T ++I          + A+ +F  +   G    + S+NT++D
Sbjct: 13  WTDGHAPMRLLMLPPSTPTTSLIDVLPAECTGPELALAVFGRLLRTGLGPDVCSYNTLID 72

Query: 182 LLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
              KE +V+KAY LF K+       DV++YN + +G C  K   K+  VL++MVD G+ P
Sbjct: 73  GFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRP 132

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           N  TYN ++ GY  AG  +E+ R F EM        VV   + +H       IK A+++F
Sbjct: 133 NNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIF 192

Query: 301 DGMVNGGVLPSVATY----------------NAMIQVLCKKDSVEN-------------- 330
           D MV  G  P++ +Y                N+++ ++  K  V N              
Sbjct: 193 DSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARC 252

Query: 331 -----AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
                A+L+FE+M  KG +P++ T+  VI  LC  G ++ AL     M D    P+   Y
Sbjct: 253 GMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVY 312

Query: 386 NILIRYFCDAGEIERGLELF-EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLI 444
             LI+  C+ GE+ +  EL  E M   +  P +  ++ +I+++F   +    +  GK ++
Sbjct: 313 RCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGR----VAEGKDIM 368

Query: 445 E-MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           + MV  G  P   TFN ++ G  L+GN   A   L L
Sbjct: 369 DLMVQTGQRPNVVTFNSLMEGYCLVGNMEEALHYLML 405



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 184/413 (44%), Gaps = 33/413 (7%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   + ++      ++ +M    + P  KT+  +   Y +AG    +V++F  M
Sbjct: 101 TYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEM 160

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKR 222
              G    + + N+ +  LC+  ++++A ++F   V +G  K ++ISY+ + +G+     
Sbjct: 161 SSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGP-KPNIISYSTLLHGYAAEGC 219

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
                 ++  MV +G+ PN   +NI++  Y R G +++A   F +M+ +    D VT+ T
Sbjct: 220 FANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFAT 279

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++     +G +  A + F+ MV+ GV PS A Y  +IQ  C    +  A  +  EM+ K 
Sbjct: 280 VISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKD 339

Query: 343 YMPNSTTY-NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
             P    Y + +I  L   G +    + +  M      PNV T+N L+  +C  G +E  
Sbjct: 340 IPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEA 399

Query: 402 L--------------------------ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
           L                          ++F +M       ++ TY +++  +     +D+
Sbjct: 400 LHYLMLWHQLALNRIVTYMARRTTAAKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDE 459

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
              A  LL ++          TFN V++ +L +G +  AKE+    S  G +P
Sbjct: 460 ---ANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFAAISTYGLVP 509



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 159/346 (45%), Gaps = 16/346 (4%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           +LV+ M S  + P  + F I+   Y   G  D+A+ IF  M   G      +F T++  L
Sbjct: 225 SLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSL 284

Query: 184 CKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP- 240
           C+  +++ A + F   V  G   ++ + Y  +  G C      KA E++ EM+++ + P 
Sbjct: 285 CRIGRLDDALHKFNHMVDIGVPPSEAV-YRCLIQGCCNHGELVKAKELISEMMNKDIPPP 343

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
            +  ++ ++   F+ G++ E       M +     +VVT+ +++ G+ +VG ++ A + +
Sbjct: 344 GVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEALH-Y 402

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
             + +   L  + TY A      KK        +F EM+  G   +  TY VV+ GLC  
Sbjct: 403 LMLWHQLALNRIVTYMARRTTAAKK--------MFHEMIESGTTVSIQTYGVVLGGLCRN 454

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
              + A   + ++     + ++ T+NI+I      G  +   ELF  + +   +P + TY
Sbjct: 455 NCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHTY 514

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
           N++IS++   +  ++   A  L I +   G  P     N ++  LL
Sbjct: 515 NLMISNLIKEESYEE---ADNLFISVEKSGRAPDSRLLNHIVRMLL 557



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 119/257 (46%), Gaps = 8/257 (3%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P  K F+ I       G+      I   M + G R ++ +FN++++  C    +E+A + 
Sbjct: 343 PGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEALHY 402

Query: 196 FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
             ++       +++Y        + +RT  A ++  EM++ G   ++ TY +VL G  R 
Sbjct: 403 LMLWHQLALNRIVTY--------MARRTTAAKKMFHEMIESGTTVSIQTYGVVLGGLCRN 454

Query: 256 GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
              +EA     ++     + D++T+  ++     VG  + A+ +F  +   G++P+V TY
Sbjct: 455 NCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHTY 514

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           N MI  L K++S E A  +F  +   G  P+S   N ++R L    E+ +A  ++  + +
Sbjct: 515 NLMISNLIKEESYEEADNLFISVEKSGRAPDSRLLNHIVRMLLKKAEVAKASNYLSIIDE 574

Query: 376 DECEPNVQTYNILIRYF 392
           +       T ++L   F
Sbjct: 575 NNLTLEASTISLLASLF 591


>gi|449454008|ref|XP_004144748.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Cucumis sativus]
 gi|449490811|ref|XP_004158714.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Cucumis sativus]
          Length = 621

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 97/434 (22%), Positives = 204/434 (47%), Gaps = 4/434 (0%)

Query: 54  RTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLA 113
           R +   L    +  +  LV +++ R       A  FF   +  P +AH   +++  + + 
Sbjct: 160 RNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAHDSKTYNTMMTIL 219

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            + R + T+ +L+  M    L  T +TF +  + + +A +  +AV +   M ++  +  +
Sbjct: 220 GKTRQFETMVSLLEEMAEKEL-LTMETFTVCFKAFAAAKERKKAVGVLELMKKYKYKVGV 278

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
            + N +LD L + K  ++A  +F+   G+F  ++ +Y V+ NGWC V+   +A ++  +M
Sbjct: 279 ETINCLLDSLGRAKLGKEALTIFEKLHGRFTPNLQTYTVLLNGWCRVRNLMEAGKIWNQM 338

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           +D    P++  +N +L+G  R  +  +A + F  MK +    DV +YT +V  F    ++
Sbjct: 339 IDEDFKPDIVAHNTMLEGLLRCKKRSDAIKLFEVMKAKGPSPDVKSYTILVRDFCKQAKM 398

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           K A   F+ M   G  P  A Y  +I     +  ++    + +EM   G  P+  TYN +
Sbjct: 399 KEAVQYFEEMQGAGCRPDAAIYTCLITGFGNQKRMDTVYGLLKEMKANGCPPDGKTYNAL 458

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           I+ + +    + A+    +M ++  +P   TY+++++ +      E G+  +++M    C
Sbjct: 459 IKLMTNKRMPDDAVRIYKKMIENGIKPTTHTYSMMMKSYFQTRNYEMGVAAWDEMKLKGC 518

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGL 473
            P+ ++Y + I  +    +  +   AGK L EM+++G    +  +N+        G   +
Sbjct: 519 CPDDNSYTVFIGGLISLGRCAE---AGKYLEEMIEKGMKAPQLDYNKFAADFSRAGRPDI 575

Query: 474 AKEILRLQSRCGRL 487
            +E+ +     G+ 
Sbjct: 576 LEELAQKMKFSGKF 589



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 5/182 (2%)

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G      TYN M+ +L K    E  + + EEM  K  +    T+ V  +      E ++A
Sbjct: 204 GFAHDSKTYNTMMTILGKTRQFETMVSLLEEMAEKELL-TMETFTVCFKAFAAAKERKKA 262

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
           +  +  MK  + +  V+T N L+     A   +  L +FEK+  G   PNL TY +L++ 
Sbjct: 263 VGVLELMKKYKYKVGVETINCLLDSLGRAKLGKEALTIFEKL-HGRFTPNLQTYTVLLNG 321

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGR 486
            + R +  +L+ AGK+  +M+D  F P     N +L GLL    +  A ++  +    G 
Sbjct: 322 -WCRVR--NLMEAGKIWNQMIDEDFKPDIVAHNTMLEGLLRCKKRSDAIKLFEVMKAKGP 378

Query: 487 LP 488
            P
Sbjct: 379 SP 380


>gi|125562731|gb|EAZ08111.1| hypothetical protein OsI_30376 [Oryza sativa Indica Group]
          Length = 794

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 173/353 (49%), Gaps = 11/353 (3%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            L +RM +    P + T+ ++ +     G A  A+K+F  M + G   ++  +  +L  L
Sbjct: 193 ALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSL 252

Query: 184 CKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           C   K+++A  L    + K    D ++YN   +G C V R N+A + L  + D G    L
Sbjct: 253 CNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGL 312

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
             Y+ ++ G F+A + +E + ++  M +R    DVV YT ++ G    G I+ A +  D 
Sbjct: 313 KGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDV 372

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M   G +P    YN +++VLC    +E A  +  EM+    + +STT  ++I GLC  G 
Sbjct: 373 MKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGL 432

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG----VCLPNLD 418
           ++ A++    M +  C+P V TYN LI  F   G +E    LF KM  G    + L    
Sbjct: 433 VDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTL 492

Query: 419 TYNILISSMFVRK------KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
             N +  S  +RK      +S  +L A KLL  ++D G +P   T+N ++NGL
Sbjct: 493 GANQVRDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGL 545



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 135/287 (47%), Gaps = 14/287 (4%)

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
           ++ P    + I+      AG+ + A+     M + G       +NT+L +LC    +E+A
Sbjct: 342 NISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERA 401

Query: 193 YNL-FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
           + L  ++ +     D  +  ++  G C     ++A+++  EM + G +P + TYN ++ G
Sbjct: 402 HTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDG 461

Query: 252 YFRAGQIEEAWRFF--LEMKKRKCEI-----------DVVTYTTIVHGFGVVGEIKRARN 298
           ++R G++EEA   F  +EM                  D  +   +VH     G++ +A  
Sbjct: 462 FYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVRDSESLRKLVHDMCQSGQVLKAYK 521

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
           +   +++ GV+P V TYN +I  LCK  +++ A+ +F+E+  KG  P+  TY  +I GL 
Sbjct: 522 LLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLL 581

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
                  A+     +      P++  YN ++R  C   ++ + + L+
Sbjct: 582 RAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLW 628



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 94/407 (23%), Positives = 163/407 (40%), Gaps = 92/407 (22%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN- 194
           P  K + ++     +AGK D AV++  SM + GC     ++N  L  LCK  +V +A+  
Sbjct: 240 PNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQR 299

Query: 195 LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           L  +  G F   +  Y+ + +G    +R ++     K M++R ++P++  Y I+++G   
Sbjct: 300 LVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAE 359

Query: 255 AGQIEEAWRFFLEMKKRK---------------CE--------------------IDVVT 279
           AG+IE+A  F   MKK+                C+                    +D  T
Sbjct: 360 AGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTT 419

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM- 338
            T ++ G    G +  A  +FD M   G  P+V TYNA+I    ++  +E A ++F +M 
Sbjct: 420 QTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKME 479

Query: 339 -----------------------------------------------VGKGYMPNSTTYN 351
                                                          +  G +P+  TYN
Sbjct: 480 MGNNPSLFLRLTLGANQVRDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYN 539

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
            +I GLC    ++ A+     ++     P+  TY  LI     A      + LF+ +   
Sbjct: 540 TLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQS 599

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
              P+L  YN ++ S+   KK   L  A  L ++     ++P+K+ F
Sbjct: 600 GSSPSLSIYNSMMRSLCRMKK---LSQAINLWLD-----YLPKKYNF 638



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/394 (24%), Positives = 157/394 (39%), Gaps = 74/394 (18%)

Query: 108 HAIDLAARLRDY--RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           HA+ L  RL  +    ++  +   ++  L  +   FA +   + SAG+   AV+ F  M 
Sbjct: 105 HAVSLLLRLSSHADEAMFDALADARAAGLPASSSAFAALVAAHSSAGRHADAVQAFSRMD 164

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNK 225
           E   R +   +NTIL  L                             + +G  L+     
Sbjct: 165 EFQSRPTAFVYNTILKAL-----------------------------VDSGVILL----- 190

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
           AL +   MV  G  PN  TYN+++ G  + G   +A + F EM  R    +V  YT ++ 
Sbjct: 191 ALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLS 250

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI--LV--------- 334
                G+I  A  +   M + G LP   TYNA +  LCK   V  A   LV         
Sbjct: 251 SLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFAL 310

Query: 335 ------------------------FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
                                   ++ M+ +   P+   Y ++IRG    G +E AL F+
Sbjct: 311 GLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFL 370

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
             MK     P+   YN +++  CD G++ER   L  +M     + +  T  I+I  +  R
Sbjct: 371 DVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKR 430

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
              D+   A ++  EM + G  P   T+N +++G
Sbjct: 431 GLVDE---AMQIFDEMGEHGCDPTVMTYNALIDG 461



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 122/264 (46%), Gaps = 3/264 (1%)

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
           + L +    GL  + + +  ++  +  AG+  +A + F  M + +       Y TI+   
Sbjct: 123 DALADARAAGLPASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKAL 182

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
              G I  A  +++ MV  G  P+ ATYN ++  LCK+    +A+ +F+EM+ +G MPN 
Sbjct: 183 VDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNV 242

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
             Y V++  LC+ G+++ A++ +G MKD  C P+  TYN  +   C  G +    +    
Sbjct: 243 KIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVM 302

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467
           +  G     L  Y+ LI  +F  ++ D+     K ++E   R   P    +  ++ G   
Sbjct: 303 LQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLE---RNISPDVVLYTIMIRGCAE 359

Query: 468 IGNQGLAKEILRLQSRCGRLPRQF 491
            G    A   L +  + G +P  F
Sbjct: 360 AGRIEDALSFLDVMKKKGFVPDTF 383



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 106/244 (43%), Gaps = 3/244 (1%)

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
           R   A++    M +    P    YN +LK    +G I  A   +  M    C  +  TY 
Sbjct: 152 RHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCAPNRATYN 211

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
            ++ G    G    A  +FD M++ G++P+V  Y  ++  LC    ++ A+ +   M  K
Sbjct: 212 VLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDK 271

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
           G +P+  TYN  + GLC  G +  A + +  ++D      ++ Y+ LI     A   + G
Sbjct: 272 GCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEG 331

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
              ++ M      P++  Y I+I       + +D L     L  M  +GF+P  F +N V
Sbjct: 332 FGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDAL---SFLDVMKKKGFVPDTFCYNTV 388

Query: 462 LNGL 465
           L  L
Sbjct: 389 LKVL 392



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 113/227 (49%), Gaps = 16/227 (7%)

Query: 131 SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190
           +L L  T +T  I        G  D A++IF  M EHGC  ++ ++N ++D   +E ++E
Sbjct: 412 NLVLDSTTQTIMICG--LCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLE 469

Query: 191 KAYNLF-KVFRGKFKA-------------DVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
           +A  LF K+  G   +             D  S   + +  C   +  KA ++L+ ++D 
Sbjct: 470 EARMLFHKMEMGNNPSLFLRLTLGANQVRDSESLRKLVHDMCQSGQVLKAYKLLRSIIDS 529

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           G+ P++ TYN ++ G  +A  ++ A R F E++ +    D +TY T++ G         A
Sbjct: 530 GVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDA 589

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
             +F  ++  G  PS++ YN+M++ LC+   +  AI ++ + + K Y
Sbjct: 590 MMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKKY 636



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/311 (19%), Positives = 121/311 (38%), Gaps = 56/311 (18%)

Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
            ++PS F      A ++RD  ++  LVH M                     +G+  +A K
Sbjct: 481 GNNPSLFLRLTLGANQVRDSESLRKLVHDM-------------------CQSGQVLKAYK 521

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWC 218
           +  S+ + G    + ++NT+++ LCK + ++ A  LFK  + K    D I+Y  + +G  
Sbjct: 522 LLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLL 581

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
              R N A+ + + ++  G +P+L+ YN +++   R  ++ +A   +L+   +K    V 
Sbjct: 582 RAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKKYNFPVE 641

Query: 279 T------------------------------------YTTIVHGFGVVGEIKRARNVFDG 302
           +                                    YT  + G   V     A  +F  
Sbjct: 642 SEVLANAHKEIEDGSLDDGVRELIKIDQEYGSISSNPYTIWLIGLCQVRRTDDALRIFHT 701

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           +   G+  + A    +I  LC   ++  A+ +    + K  + +    N ++R LC    
Sbjct: 702 LQEFGIDITPACCALLINYLCWDRNLNAAVDIMLYALSKSIILSQPVGNRLLRWLCICYR 761

Query: 363 MERALEFVGRM 373
            + A     RM
Sbjct: 762 RQDAQALAWRM 772


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 177/382 (46%), Gaps = 4/382 (1%)

Query: 84  LKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAI 143
           +K  H   +L     Y     S+   ++   R  +   VW L+  MK   L P    +  
Sbjct: 262 IKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGS 321

Query: 144 IAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK- 202
           I        K   A + F  M   G       + T++D  CK   +  A   F     + 
Sbjct: 322 IIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRD 381

Query: 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262
              DV++Y  I +G+C +    +A ++  EM  +GL P+  T+  ++ GY +AG +++A+
Sbjct: 382 ITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAF 441

Query: 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322
           R    M +  C  +VVTYTT++ G    G++  A  +   M   G+ P++ TYN+++  L
Sbjct: 442 RVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGL 501

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
           CK  ++E A+ +  E    G   ++ TY  ++   C +GEM++A E +  M     +P +
Sbjct: 502 CKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTI 561

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
            T+N+L+  FC  G +E G +L   M +    PN  T+N L+    +R   ++L  A  +
Sbjct: 562 VTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIR---NNLKAATAI 618

Query: 443 LIEMVDRGFMPRKFTFNRVLNG 464
             +M  RG  P   T+  ++ G
Sbjct: 619 YKDMCSRGVGPDGKTYENLVKG 640



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 186/384 (48%), Gaps = 6/384 (1%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           +S++  I    +L   +    L+  M+     P   +++ +   Y   G+ D+  K+   
Sbjct: 247 ASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEV 306

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKR 222
           M   G + +   + +I+ LLC+  K+ +A   F ++ R     D + Y  + +G+C    
Sbjct: 307 MKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGD 366

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
              A +   EM  R + P++ TY  ++ G+ + G + EA + F EM  +  E D VT+T 
Sbjct: 367 IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTE 426

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           +++G+   G +K A  V + M+  G  P+V TY  +I  LCK+  +++A  +  EM   G
Sbjct: 427 LINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 486

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
             PN  TYN ++ GLC +G +E A++ VG  +      +  TY  L+  +C +GE+++  
Sbjct: 487 LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 546

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           E+ ++M      P + T+N+L++   +    +D     KLL  M+ +G  P   TFN ++
Sbjct: 547 EILKEMLGKGLQPTIVTFNVLMNGFCLHGMLED---GEKLLNWMLAKGIAPNATTFNSLV 603

Query: 463 NGLLLIGNQGLAKEILRLQSRCGR 486
               +  N   A  I +    C R
Sbjct: 604 KQYCIRNNLKAATAIYK--DMCSR 625



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 158/338 (46%), Gaps = 5/338 (1%)

Query: 135 GPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE-KKVEKAY 193
           G   + F +  +  V  G    A ++F  M  +G   S++S N  L  L K+  K   A 
Sbjct: 172 GSDPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAI 231

Query: 194 NLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
            +F+ F       +V SYN++ +  C + R  +A  +L  M  +G  P++ +Y+ V+ GY
Sbjct: 232 IVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGY 291

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
            R G++++ W+    MK++  + +   Y +I+     + ++  A   F  M+  G+LP  
Sbjct: 292 CRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDT 351

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
             Y  +I   CK+  +  A   F EM  +   P+  TY  +I G C  G+M  A +    
Sbjct: 352 VVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHE 411

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           M     EP+  T+  LI  +C AG ++    +   M    C PN+ TY  LI  +    K
Sbjct: 412 MFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLC---K 468

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
             DL  A +LL EM   G  P  FT+N ++NGL   GN
Sbjct: 469 EGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN 506



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 165/352 (46%), Gaps = 6/352 (1%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID   +  D R      + M S  + P   T+  I   +   G    A K+F  M   G 
Sbjct: 358 IDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGL 417

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALE 228
                +F  +++  CK   ++ A+ +   + +     +V++Y  + +G C     + A E
Sbjct: 418 EPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANE 477

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           +L EM   GL PN+ TYN ++ G  ++G IEEA +   E +      D VTYTT++  + 
Sbjct: 478 LLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYC 537

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             GE+ +A+ +   M+  G+ P++ T+N ++   C    +E+   +   M+ KG  PN+T
Sbjct: 538 KSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNAT 597

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           T+N +++  C    ++ A      M      P+ +TY  L++  C A  ++    LF++M
Sbjct: 598 TFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEM 657

Query: 409 -GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
            G G  + ++ TY++LI     RKK    L A ++  +M   G    K  F+
Sbjct: 658 KGKGFSV-SVSTYSVLIKGFLKRKK---FLEAREVFDQMRREGLAADKEIFD 705



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 163/322 (50%), Gaps = 1/322 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L H M    L P   TF  +   Y  AG    A ++   M + GC  ++ ++ T++D LC
Sbjct: 408 LFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLC 467

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           KE  ++ A  L  ++++   + ++ +YN I NG C      +A++++ E    GLN +  
Sbjct: 468 KEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTV 527

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY  ++  Y ++G++++A     EM  +  +  +VT+  +++GF + G ++    + + M
Sbjct: 528 TYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWM 587

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           +  G+ P+  T+N++++  C +++++ A  ++++M  +G  P+  TY  +++G C    M
Sbjct: 588 LAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNM 647

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A      MK      +V TY++LI+ F    +     E+F++M       + + ++  
Sbjct: 648 KEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFF 707

Query: 424 ISSMFVRKKSDDLLVAGKLLIE 445
             + +  K+ D ++     +IE
Sbjct: 708 SDTKYKGKRPDTIVDPIDEIIE 729



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 136/270 (50%), Gaps = 3/270 (1%)

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
           +T  A+ V +E  + G+  N+ +YNIV+    + G+I+EA    L M+ +    DV++Y+
Sbjct: 226 KTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYS 285

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
           T+V+G+   GE+ +   + + M   G+ P+   Y ++I +LC+   +  A   F EM+ +
Sbjct: 286 TVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ 345

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
           G +P++  Y  +I G C  G++  A +F   M   +  P+V TY  +I  FC  G++   
Sbjct: 346 GILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEA 405

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
            +LF +M      P+  T+  LI+      K+  +  A ++   M+  G  P   T+  +
Sbjct: 406 GKLFHEMFCKGLEPDSVTFTELINGYC---KAGHMKDAFRVHNHMIQAGCSPNVVTYTTL 462

Query: 462 LNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           ++GL   G+   A E+L    + G  P  F
Sbjct: 463 IDGLCKEGDLDSANELLHEMWKIGLQPNIF 492


>gi|15229026|ref|NP_190450.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183419|sp|Q9M302.1|PP270_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g48810
 gi|7576219|emb|CAB87909.1| putative protein [Arabidopsis thaliana]
 gi|332644937|gb|AEE78458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 130/524 (24%), Positives = 218/524 (41%), Gaps = 108/524 (20%)

Query: 75  IIKRLWNHALK--ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSL 132
           ++KRL   +    ALHFF  ++    + H+P +F+  I   A      +V  L+ +MK  
Sbjct: 46  VVKRLRQESCVPLALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQ 105

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL--------- 183
               ++  F  +   Y   G A+RAV++F  + E GC  S+  +N +LD L         
Sbjct: 106 GFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMI 165

Query: 184 --------------------------CKEKKVEKAYNLFKVFRGK--------------- 202
                                     CK  KV+ A  L      K               
Sbjct: 166 YMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISS 225

Query: 203 ----------------FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
                           F+  V  YN + NG C       A E+++EMV++G++PN+ +Y+
Sbjct: 226 MCEVGLVKEGRELAERFEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYS 285

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKC--------------------------------- 273
            ++     +GQIE A+ F  +M KR C                                 
Sbjct: 286 TLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRG 345

Query: 274 ---EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
              + +VV Y T+V GF   G I +A +VF  M   G  P++ TY ++I    K+ S++ 
Sbjct: 346 FGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDG 405

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           A+ ++ +M+  G  PN   Y  ++  LC   + + A   +  M  + C P+V T+N  I+
Sbjct: 406 AVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIK 465

Query: 391 YFCDAGEIERGLELFEKMGSG-VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
             CDAG ++   ++F +M     C PN+ TYN L+  +    K++ +  A  L  E+  R
Sbjct: 466 GLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGL---AKANRIEEAYGLTREIFMR 522

Query: 450 GFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQFKL 493
           G      T+N +L+G    G  G+A +++      G+ P +  +
Sbjct: 523 GVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITM 566



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/404 (22%), Positives = 181/404 (44%), Gaps = 43/404 (10%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           S ++  I+   +  DY+  + L+  M    + P   +++ +     ++G+ + A      
Sbjct: 247 SVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQ 306

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRG-KFKADVISYNVIANGWCLVK 221
           M + GC  ++ + ++++           A +L+ ++ RG   + +V++YN +  G+C   
Sbjct: 307 MLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHG 366

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
              KA+ V   M + G +PN+ TY  ++ G+ + G ++ A   + +M    C  +VV YT
Sbjct: 367 NIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYT 426

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC------------------ 323
            +V       + K A ++ + M      PSV T+NA I+ LC                  
Sbjct: 427 NMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQ 486

Query: 324 ------------------KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
                             K + +E A  +  E+  +G   +S+TYN ++ G C+ G    
Sbjct: 487 HRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGI 546

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG--VCLPNLDTYNIL 423
           AL+ VG+M  D   P+  T N++I  +C  G+ ER  ++ + +  G     P++ +Y  +
Sbjct: 547 ALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQMLDLVSCGRRKWRPDVISYTNV 606

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467
           I  +      +D ++   LL  M+  G +P   T++ ++N  +L
Sbjct: 607 IWGLCRSNCREDGVI---LLERMISAGIVPSIATWSVLINCFIL 647



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 130/278 (46%), Gaps = 23/278 (8%)

Query: 63  PSLHWTPQLVDQIIKR--------LWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAA 114
           P++     L++   KR        +WN  L +    N++ Y            + ++   
Sbjct: 385 PNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVY-----------TNMVEALC 433

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM-HEHGCRQSL 173
           R   ++   +L+  M   +  P+  TF    +    AG+ D A K+F  M  +H C  ++
Sbjct: 434 RHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNI 493

Query: 174 NSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
            ++N +LD L K  ++E+AY L + +F    +    +YN + +G C       AL+++ +
Sbjct: 494 VTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGK 553

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF--FLEMKKRKCEIDVVTYTTIVHGFGVV 290
           M+  G +P+  T N+++  Y + G+ E A +    +   +RK   DV++YT ++ G    
Sbjct: 554 MMVDGKSPDEITMNMIILAYCKQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWGLCRS 613

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
              +    + + M++ G++PS+AT++ +I      D V
Sbjct: 614 NCREDGVILLERMISAGIVPSIATWSVLINCFILDDIV 651


>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
          Length = 668

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/395 (25%), Positives = 186/395 (47%), Gaps = 38/395 (9%)

Query: 103 PSSFDHAIDLAARLRD--YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P+   + + L A  ++  +     ++  M++    P   T+ +I       G+ D A  +
Sbjct: 175 PNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDL 234

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCL 219
              +  +GC+    S+ T+L  LC  K+ +    LF ++       + ++++++   +C 
Sbjct: 235 LNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCR 294

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
                +A++VL++M +     N T  NIV+    + G++++A++F   M    C  D ++
Sbjct: 295 GGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTIS 354

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM- 338
           YTT++ G         A+ +   MV     P+  T+N  I +LC+K  +E AI++ E+M 
Sbjct: 355 YTTVLKGLCRAERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQ 414

Query: 339 -----VG-------------KGYM-------------PNSTTYNVVIRGLCHTGEMERAL 367
                VG             +G++             PN+ TY  ++ GLC+   ++ A 
Sbjct: 415 EHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCKPNTITYTTLLTGLCNAERLDAAA 474

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           E V  M   +C PNV T+N+L+ +FC  G ++  +EL E+M    C PNL TYN L   +
Sbjct: 475 ELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGI 534

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
                S+D L   +LL  +V +G  P   TF+ ++
Sbjct: 535 TKDCSSEDAL---ELLHGLVSKGVSPDVITFSSII 566



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 161/333 (48%), Gaps = 9/333 (2%)

Query: 90  FNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWT----LVHRMKSLSLGPTQKTFAIIA 145
           F  L+   +Y  +P +  +   L    R  R  W     L+  M   +  P + TF    
Sbjct: 337 FKFLNNMGSYGCNPDTISYTTVLKGLCRAER--WNDAKELLKEMVRNNCPPNEVTFNTFI 394

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA 205
                 G  ++A+ +   M EHGC   + ++N +++  C +  ++ A  LF+      K 
Sbjct: 395 CILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSM--PCKP 452

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           + I+Y  +  G C  +R + A E++ EM+ R   PN+ T+N+++  + + G ++EA    
Sbjct: 453 NTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELV 512

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
            +M +  C  +++TY T+  G       + A  +  G+V+ GV P V T++++I +L K+
Sbjct: 513 EQMMEHGCTPNLITYNTLFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKE 572

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
           D VE AI +F      G  P +  YN ++ GLC   E++ A++F+  M  + C PN  TY
Sbjct: 573 DRVEEAIQMFHLAQDIGMRPKALVYNKILLGLCKRHEIDNAIDFLAYMVSNGCMPNESTY 632

Query: 386 NILIRYFCDAGEIERGLELFEKMGS-GVCLPNL 417
            ILI      G ++   +L   + S GV   NL
Sbjct: 633 IILIEGLAREGLLKEAQDLLSMLCSRGVVSKNL 665



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 159/329 (48%), Gaps = 8/329 (2%)

Query: 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYN 211
           G+   A ++  +    G    + ++NT++   C+   ++ A  L          D  +Y 
Sbjct: 89  GRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRLIGSM--PVAPDAYTYT 146

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
            +    C   R   AL +L +M+ RG  PN+ TY ++L+   +    E+A     EM+ +
Sbjct: 147 PLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAK 206

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
            C  ++VTY  I++G    G +  AR++ + + + G  P   +Y  +++ LC     ++ 
Sbjct: 207 GCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDV 266

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
             +F EM+ K  MPN  T++++IR  C  G +ERA++ + +M + EC  N    NI+I  
Sbjct: 267 EELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINS 326

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
            C  G ++   +    MGS  C P+  +Y  ++  +   ++ +D   A +LL EMV    
Sbjct: 327 ICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWND---AKELLKEMVRNNC 383

Query: 452 MPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
            P + TFN     + ++  +GL ++ + L
Sbjct: 384 PPNEVTFNTF---ICILCQKGLIEQAIML 409



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 166/369 (44%), Gaps = 42/369 (11%)

Query: 131 SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190
           S+ + P   T+  +       G+   A+ +   M   GC+ ++ ++  +L+ +CK    E
Sbjct: 135 SMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFE 194

Query: 191 KAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL 249
           +A  +    R K    ++++YNVI NG C   R + A ++L  +   G  P+  +Y  +L
Sbjct: 195 QAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLL 254

Query: 250 KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM------ 303
           KG   + + ++    F EM ++ C  + VT+  ++  F   G ++RA  V   M      
Sbjct: 255 KGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECA 314

Query: 304 ---------VNG--------------------GVLPSVATYNAMIQVLCKKDSVENAILV 334
                    +N                     G  P   +Y  +++ LC+ +   +A  +
Sbjct: 315 TNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKEL 374

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
            +EMV     PN  T+N  I  LC  G +E+A+  + +M++  C   V TYN L+  FC 
Sbjct: 375 LKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCV 434

Query: 395 AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
            G I+  LELF  M    C PN  TY  L++ +   ++ D    A +L+ EM+ R   P 
Sbjct: 435 QGHIDSALELFRSMP---CKPNTITYTTLLTGLCNAERLD---AAAELVAEMLHRDCPPN 488

Query: 455 KFTFNRVLN 463
             TFN ++N
Sbjct: 489 VVTFNVLVN 497



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 112/429 (26%), Positives = 175/429 (40%), Gaps = 82/429 (19%)

Query: 98  TYAHSPSSFDHAIDLAARLRDYR--TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKAD 155
           +Y   P +  +   L       R   V  L   M   +  P + TF ++   +   G  +
Sbjct: 240 SYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVE 299

Query: 156 RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF--KADVISYNVI 213
           RA+++   M EH C  +    N +++ +CK+ +V+ A+       G +    D ISY  +
Sbjct: 300 RAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNM-GSYGCNPDTISYTTV 358

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
             G C  +R N A E+LKEMV     PN  T+N  +    + G IE+A     +M++  C
Sbjct: 359 LKGLCRAERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGC 418

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVF----------------DGMVNGGVL-------- 309
            + VVTY  +V+GF V G I  A  +F                 G+ N   L        
Sbjct: 419 TVGVVTYNALVNGFCVQGHIDSALELFRSMPCKPNTITYTTLLTGLCNAERLDAAAELVA 478

Query: 310 --------PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
                   P+V T+N ++   C+K  ++ AI + E+M+  G  PN  TYN +  G+    
Sbjct: 479 EMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDC 538

Query: 362 EMERALEFVGRM--------------------KDDECEPNVQ---------------TYN 386
             E ALE +  +                    K+D  E  +Q                YN
Sbjct: 539 SSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVYN 598

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF---VRKKSDDLL------ 437
            ++   C   EI+  ++    M S  C+PN  TY ILI  +    + K++ DLL      
Sbjct: 599 KILLGLCKRHEIDNAIDFLAYMVSNGCMPNESTYIILIEGLAREGLLKEAQDLLSMLCSR 658

Query: 438 -VAGKLLIE 445
            V  K LIE
Sbjct: 659 GVVSKNLIE 667



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 137/313 (43%), Gaps = 41/313 (13%)

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           DV     +    C   RT+ A  VL+     G   ++  YN ++ GY R G ++ A R  
Sbjct: 74  DVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRLI 133

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
             M       D  TYT ++      G +  A ++ D M+  G  P+V TY  +++ +CK 
Sbjct: 134 GSMPVAP---DAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKN 190

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR------------- 372
              E A+ V +EM  KG  PN  TYNV+I G+C  G ++ A + + R             
Sbjct: 191 SGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSY 250

Query: 373 ----------------------MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
                                 M +  C PN  T+++LIR+FC  G +ER +++ ++M  
Sbjct: 251 TTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTE 310

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
             C  N    NI+I+S+  + + DD   A K L  M   G  P   ++  VL GL     
Sbjct: 311 HECATNTTLCNIVINSICKQGRVDD---AFKFLNNMGSYGCNPDTISYTTVLKGLCRAER 367

Query: 471 QGLAKEILRLQSR 483
              AKE+L+   R
Sbjct: 368 WNDAKELLKEMVR 380



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 114/226 (50%), Gaps = 6/226 (2%)

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           G  P++     +++   R G+  +A R     +     +DV  Y T+V G+   G +  A
Sbjct: 70  GEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAA 129

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
           R +   M    V P   TY  +I+VLC +  V +A+ + ++M+ +G  PN  TY V++  
Sbjct: 130 RRLIGSM---PVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEA 186

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
           +C     E+A+  +  M+   C PN+ TYN++I   C  G ++   +L  ++ S  C P+
Sbjct: 187 MCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPD 246

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
             +Y  L+  +   K+ DD+    +L  EM+++  MP + TF+ ++
Sbjct: 247 TVSYTTLLKGLCASKRWDDV---EELFAEMMEKNCMPNEVTFDMLI 289



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 79/172 (45%), Gaps = 6/172 (3%)

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G  P V     +I+ LC++    +A  V     G G   +   YN ++ G C  G ++ A
Sbjct: 70  GEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAA 129

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
              +G M      P+  TY  LIR  CD G +   L L + M    C PN+ TY +L+ +
Sbjct: 130 RRLIGSMP---VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEA 186

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           M    K+     A  +L EM  +G  P   T+N ++NG+   G    A+++L
Sbjct: 187 MC---KNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLL 235


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 124/440 (28%), Positives = 205/440 (46%), Gaps = 48/440 (10%)

Query: 90  FNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149
           FN+L   P++A    + +  +D  AR R+Y   +++  RM  + + P+  + + + E + 
Sbjct: 68  FNLL---PSWA----TCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSALIECFA 120

Query: 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVI 208
            A K      +   + + G   ++   N +L  LC+   V +A  L + + R     D++
Sbjct: 121 DAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIV 180

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           SYN + NG C  K+  +A+ +L EM   G  PN  T   ++ G  + G+++EA      M
Sbjct: 181 SYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAM 240

Query: 269 KKRKCEIDVV-----------------------------------TYTTIVHGFGVVGEI 293
           KK+  + DVV                                   TY+ +VHG   +G+ 
Sbjct: 241 KKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQW 300

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           K A  V + M   G+ P V TY  +I  LCK     +A+ +   MV KG  P++ TYNV+
Sbjct: 301 KEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVL 360

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGV 412
           + GLC  G +  A + +  M +   + +V TYN L++  CD G+++  L+LF  M  +  
Sbjct: 361 LSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNEN 420

Query: 413 CL-PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
           CL PN+ T+N+LI  +    K   L  A K+  +MV +G      T+N +L G L  G  
Sbjct: 421 CLEPNVFTFNMLIGGLC---KEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKI 477

Query: 472 GLAKEILRLQSRCGRLPRQF 491
             A E+ +     G +P  F
Sbjct: 478 KEAMELWKQVLDLGFVPNSF 497



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 176/353 (49%), Gaps = 8/353 (2%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           T++ +       G+   A  +  +M EHG    + ++  ++D LCK+ +   A +L  + 
Sbjct: 286 TYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLM 345

Query: 200 --RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
             +G+  ++V +YNV+ +G C       A ++L+ M+++G   ++ TYN ++KG    G+
Sbjct: 346 VEKGEEPSNV-TYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGK 404

Query: 258 IEEAWRFFLEM-KKRKC-EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
           ++EA + F  M     C E +V T+  ++ G    G + +A  +   MV  G   ++ TY
Sbjct: 405 VDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTY 464

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           N ++    K   ++ A+ ++++++  G++PNS TY+++I G C    +  A      M+ 
Sbjct: 465 NMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRT 524

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
               P +  YN L+   C  G +E+   LF++MG+  C P++ ++N +I       K+ D
Sbjct: 525 HGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTL---KAGD 581

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
                +L ++MV+ G  P   TF+ ++N L  +G    AK  L      G  P
Sbjct: 582 FQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTP 634



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 105/371 (28%), Positives = 185/371 (49%), Gaps = 11/371 (2%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            RL  ++   T+++ M    + P   T+  + +     G+A  A+ +   M E G   S 
Sbjct: 295 CRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSN 354

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKRTNKALEVLK 231
            ++N +L  LCKE  V  A+ + ++   +GK KADV++YN +  G C   + ++AL++  
Sbjct: 355 VTYNVLLSGLCKEGLVIDAFKILRMMIEKGK-KADVVTYNTLMKGLCDKGKVDEALKLFN 413

Query: 232 EMVDRG--LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289
            M D    L PN+ T+N+++ G  + G++ +A +   +M K+    ++VTY  ++ G   
Sbjct: 414 SMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLK 473

Query: 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
            G+IK A  ++  +++ G +P+  TY+ +I   CK   +  A  +F EM   G  P    
Sbjct: 474 AGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFD 533

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
           YN ++  LC  G +E+A      M +  CEP++ ++N +I     AG+ +   EL  KM 
Sbjct: 534 YNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMV 593

Query: 410 SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
                P+  T++ LI+ +    K  +L  A   L  MV  GF P    ++ +L GL    
Sbjct: 594 EMGLRPDALTFSTLINRL---SKLGELDEAKSALERMVASGFTPDALVYDSLLKGL---S 647

Query: 470 NQGLAKEILRL 480
           ++G   EI+ L
Sbjct: 648 SKGDTTEIINL 658



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 171/379 (45%), Gaps = 15/379 (3%)

Query: 111 DLAARLRD--------YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFL 162
           DL  +LR         +    +L H     +L P+  T   + +    +     A  ++ 
Sbjct: 39  DLETQLRSLCQKPNSQFTEAVSLFHSALDFNLLPSWATCNFLVDALARSRNYGLAFSVYR 98

Query: 163 SMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVK 221
            M       S  S + +++     +K +  + +   V +  F  +V   N++  G C   
Sbjct: 99  RMTHVDVLPSFGSLSALIECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNG 158

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
              +A+ +++EM  + ++P++ +YN ++ G  +A +++EA    LEM+   C  + VT T
Sbjct: 159 GVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCT 218

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
           T++ G    G +  A  + + M   G    V  Y  +I   C   +++    +F+EM+GK
Sbjct: 219 TLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGK 278

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
           G   N  TY+ ++ GLC  G+ + A   +  M +    P+V TY  LI   C  G     
Sbjct: 279 GISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHA 338

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
           ++L   M      P+  TYN+L+S +    K   ++ A K+L  M+++G      T+N +
Sbjct: 339 MDLLNLMVEKGEEPSNVTYNVLLSGLC---KEGLVIDAFKILRMMIEKGKKADVVTYNTL 395

Query: 462 LNGLLLIGNQGLAKEILRL 480
           + GL    ++G   E L+L
Sbjct: 396 MKGLC---DKGKVDEALKL 411



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 121/241 (50%), Gaps = 1/241 (0%)

Query: 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
           L P   TF ++       G+  +AVKI   M + G   +L ++N +L    K  K+++A 
Sbjct: 422 LEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAM 481

Query: 194 NLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
            L+K V    F  +  +Y+++ +G+C ++  N A  +  EM   GLNP L  YN ++   
Sbjct: 482 ELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASL 541

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
            + G +E+A   F EM    CE D++++ T++ G    G+ +  + +   MV  G+ P  
Sbjct: 542 CKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDA 601

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            T++ +I  L K   ++ A    E MV  G+ P++  Y+ +++GL   G+    +  + +
Sbjct: 602 LTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQ 661

Query: 373 M 373
           M
Sbjct: 662 M 662



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 159/335 (47%), Gaps = 13/335 (3%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRD------YRTVWTLVHRMKSLSLGPTQ 138
           +A H  ++L+        PS+  + + L+   ++      ++ +  ++ + K   +    
Sbjct: 334 RATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADV---- 389

Query: 139 KTFAIIAERYVSAGKADRAVKIFLSM--HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF 196
            T+  + +     GK D A+K+F SM  +E+    ++ +FN ++  LCKE ++ KA  + 
Sbjct: 390 VTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIH 449

Query: 197 -KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
            K+ +     ++++YN++  G     +  +A+E+ K+++D G  PN  TY+I++ G+ + 
Sbjct: 450 RKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKM 509

Query: 256 GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
             +  A   F EM+       +  Y T++      G +++A+++F  M N    P + ++
Sbjct: 510 RMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISF 569

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           N MI    K    +    +  +MV  G  P++ T++ +I  L   GE++ A   + RM  
Sbjct: 570 NTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVA 629

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
               P+   Y+ L++     G+    + L  +M +
Sbjct: 630 SGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAA 664



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 3/194 (1%)

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
           +   A ++F   ++  +LPS AT N ++  L +  +   A  V+  M     +P+  + +
Sbjct: 54  QFTEAVSLFHSALDFNLLPSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLS 113

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
            +I       + +     VG +       NV   NI+++  C  G +   + L  +MG  
Sbjct: 114 ALIECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRK 173

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
              P++ +YN LI+ +   KK   L  A  LL+EM   G  P   T   +++GL   G  
Sbjct: 174 SVSPDIVSYNTLINGLCKAKK---LKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRM 230

Query: 472 GLAKEILRLQSRCG 485
             A E+L    + G
Sbjct: 231 DEAMELLEAMKKKG 244


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 113/391 (28%), Positives = 180/391 (46%), Gaps = 39/391 (9%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L   M    L P   TF  +       G    + ++F  + + G   +L +FN  +  LC
Sbjct: 282 LFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLC 341

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           KE  +++A  L   V R   + DV++YN +  G C   R  +A E L +MV+ G  PN  
Sbjct: 342 KEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDF 401

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN ++ GY + G + +A R   +   +  + D  TY ++V+GF   G+  +A  VF   
Sbjct: 402 TYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDG 461

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG-- 361
           +  G+ PS+  YN +I+ LC++  +  A+ +  EM  KG  P+  TYN++I GLC  G  
Sbjct: 462 LGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCL 521

Query: 362 ---------------------------------EMERALEFVGRMKDDECEPNVQTYNIL 388
                                            +++ A+E V RM      P+V TYN L
Sbjct: 522 SDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTL 581

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           +   C   + E  +E+F+ M    C PN+ TYN +I S+   KK ++   A  LL EM  
Sbjct: 582 LNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNE---AVDLLGEMKS 638

Query: 449 RGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           +G  P   +F  ++ G   +G+   A  + R
Sbjct: 639 KGLTPDVVSFGTLITGFCKVGDLDGAYGLFR 669



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 165/334 (49%), Gaps = 5/334 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P + T+  +   +   G  D+A+ +F      G R S+  +NT++  LC++  +  A  L
Sbjct: 433 PDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQL 492

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
                 K  K D+ +YN+I NG C +   + A  ++ + + +G  P++ TYN ++ GY R
Sbjct: 493 MNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCR 552

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
             +++ A      M  +    DV+TY T+++G     + +    +F  M   G  P++ T
Sbjct: 553 QLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIIT 612

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE-FVGRM 373
           YN +I+ LC    V  A+ +  EM  KG  P+  ++  +I G C  G+++ A   F G  
Sbjct: 613 YNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGME 672

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
           K  +      TYNI+I  F +   ++  L LF +M    C P+  TY +LI       K+
Sbjct: 673 KQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFC---KT 729

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467
            ++    K L+E +++GF+P   TF RVLN L +
Sbjct: 730 GNVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCV 763



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/297 (30%), Positives = 151/297 (50%), Gaps = 6/297 (2%)

Query: 185 KEKKVEKAYNLFKVFRGKFKAD--VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           ++ K+++A + F+     F  D  V SYN I N        N+A +V   M D+ +  ++
Sbjct: 167 RKGKIQEAVDTFERM-DLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDV 225

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TY I +K + R G+   A R    M    C  + V Y T+V GF   G+  RAR +FD 
Sbjct: 226 YTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDE 285

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M+   + P V T+N ++  LCKK  V  +  +F++++ +G  PN  T+N+ I+GLC  G 
Sbjct: 286 MLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGS 345

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           ++RA+  +G +  +   P+V TYN +I   C    +    E   KM +G   PN  TYN 
Sbjct: 346 LDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNS 405

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           +I       K   ++ A ++L + V +GF P +FT+  ++NG    G+   A  + +
Sbjct: 406 IIDGYC---KKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFK 459



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 103/434 (23%), Positives = 177/434 (40%), Gaps = 76/434 (17%)

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186
            RM   +  P+  ++  I    V  G  ++A K+++ M +      + ++   +   C+ 
Sbjct: 179 ERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRIKSFCRT 238

Query: 187 KKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD--------- 235
            +   A  L +     G F ++ ++Y  +  G+      ++A E+  EM++         
Sbjct: 239 GRPYAALRLLRNMPVLGCF-SNAVAYCTVVTGFYEFGDNDRARELFDEMLECCLCPDVTT 297

Query: 236 --------------------------RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
                                     RG+ PNL T+NI ++G  + G ++ A R    + 
Sbjct: 298 FNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVS 357

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV- 328
           +     DVVTY T++ G      +  A      MVNGG  P+  TYN++I   CKK  V 
Sbjct: 358 REGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVV 417

Query: 329 ----------------------------------ENAILVFEEMVGKGYMPNSTTYNVVI 354
                                             + A+ VF++ +GKG  P+   YN +I
Sbjct: 418 DANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLI 477

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
           +GLC  G +  AL+ +  M +  C+P++ TYN++I   C  G +     L     +  C+
Sbjct: 478 KGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCI 537

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           P++ TYN L+     + K D    A +L+  M  +G  P   T+N +LNGL         
Sbjct: 538 PDIFTYNTLVDGYCRQLKLDS---AIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEV 594

Query: 475 KEILRLQSRCGRLP 488
            EI +  +  G  P
Sbjct: 595 MEIFKAMTEKGCAP 608



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 121/245 (49%), Gaps = 2/245 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  +D   R     +   LV+RM S  + P   T+  +        K++  ++IF +M
Sbjct: 542 TYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAM 601

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
            E GC  ++ ++NTI++ LC  KKV +A +L    + K    DV+S+  +  G+C V   
Sbjct: 602 TEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDL 661

Query: 224 NKALEVLKEMVDR-GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
           + A  + + M  +  ++    TYNI++  +     ++ A R F EMKK  C+ D  TY  
Sbjct: 662 DGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRV 721

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++ GF   G + +        +  G +PS+ T+  ++  LC +  V+ A+ +   MV K 
Sbjct: 722 LIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQEAVGIIHLMVQKD 781

Query: 343 YMPNS 347
            +P++
Sbjct: 782 IVPDT 786



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 123/251 (49%), Gaps = 8/251 (3%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+  + + Y    K D A+++   M   G    + ++NT+L+ LCK  K E+   +
Sbjct: 538 PDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEI 597

Query: 196 FKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           FK    K  A ++I+YN I    C  K+ N+A+++L EM  +GL P++ ++  ++ G+ +
Sbjct: 598 FKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCK 657

Query: 255 AGQIEEAWRFFLEMKKRKCEIDV----VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
            G ++ A+  F  M+K   + DV     TY  I+  F     +K A  +F  M   G  P
Sbjct: 658 VGDLDGAYGLFRGMEK---QYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDP 714

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
              TY  +I   CK  +V        E + KG++P+ TT+  V+  LC   +++ A+  +
Sbjct: 715 DNYTYRVLIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQEAVGII 774

Query: 371 GRMKDDECEPN 381
             M   +  P+
Sbjct: 775 HLMVQKDIVPD 785



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 131/317 (41%), Gaps = 8/317 (2%)

Query: 179 ILDLLCK--EKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
           ++D+ C   E    +   L K  +  FK  + +Y  +        + N+   +L EM   
Sbjct: 89  LVDVFCMKYEDVCIRNLQLIKKTKQGFKHTLFTYKSMLQKLGFHGKFNEMENLLSEMRSN 148

Query: 237 GLNPNLT-TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
             N  L   Y   ++ Y R G+I+EA   F  M    C+  V +Y  I++     G   +
Sbjct: 149 LDNTLLEGVYVEAMRFYGRKGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQ 208

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
           A  V+  M +  V   V TY   I+  C+      A+ +   M   G   N+  Y  V+ 
Sbjct: 209 AHKVYMRMKDKKVESDVYTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVT 268

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK-MGSGVCL 414
           G    G+ +RA E    M +    P+V T+N L+   C  G +     LF+K +  GVC 
Sbjct: 269 GFYEFGDNDRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVC- 327

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           PNL T+NI I  +    K   L  A +LL  +   G  P   T+N V+ GL        A
Sbjct: 328 PNLFTFNIFIQGLC---KEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEA 384

Query: 475 KEILRLQSRCGRLPRQF 491
           +E L      G  P  F
Sbjct: 385 EECLHKMVNGGFEPNDF 401



 Score = 43.1 bits (100), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 24/110 (21%), Positives = 47/110 (42%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           A   F  +      +H+ ++++  I   +   + +    L   MK     P   T+ ++ 
Sbjct: 664 AYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLI 723

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           + +   G  ++  K  L   E G   SL +F  +L+ LC E KV++A  +
Sbjct: 724 DGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQEAVGI 773


>gi|302766715|ref|XP_002966778.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
 gi|300166198|gb|EFJ32805.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
          Length = 480

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/418 (24%), Positives = 203/418 (48%), Gaps = 14/418 (3%)

Query: 79  LWNHALKALHFFNILSYHPTY--------AHSPSSFDHAIDLAARLRDYRTVWTLVHRMK 130
           L+N+ +  L    +L+   +Y        A +  S++  ID   + R+       +  M+
Sbjct: 66  LYNNLISCLCKAGMLAEAESYLKRMPQHCAPNVVSYNIIIDGYCKARNIEKALAFLREME 125

Query: 131 SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190
            L   PT   ++ I + +   G   +A+ +F  M   GC   + +FN +L  L + +K+ 
Sbjct: 126 ELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIH 185

Query: 191 KAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL 249
           +A  LF+    +  K DV++YN +  G C  K+ ++A+ +L+ M    ++P   TY  ++
Sbjct: 186 EARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLI 245

Query: 250 KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT--IVHGFGVVGEIKRARNVFDGMVNGG 307
               +  ++++A+  F +M +  C      Y+   +++G         A+ +F  M   G
Sbjct: 246 DHLCKFARLQQAYEVFEKMAEGPCPCTEPAYSVLILINGLCKARRPGEAKEMFQEMRGRG 305

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           + P+V TYN +++ L     +++A+ +   M+ +   PN  TY ++I  LC T ++E A 
Sbjct: 306 ISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQVPAPNMFTYEILISSLCKTDQVEEAF 365

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           + +  M+D    P+++ + +L+     AG ++   EL+++M    C   + + NIL+  +
Sbjct: 366 KLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSSNILLDGI 425

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
             R   D+   A   L +M D G +P KFT+++++ GL   G    A++++    R G
Sbjct: 426 LRRGSVDE---AKDFLKQMTDTGIVPDKFTYDKLVVGLCWQGKADQARKLVEELVRDG 480



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 107/397 (26%), Positives = 172/397 (43%), Gaps = 40/397 (10%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            +V  MK     P  ++  ++   +  +G   R       M E G   +   +N ++  L
Sbjct: 15  AIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYNNLISCL 74

Query: 184 CKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           CK   + +A +  K        +V+SYN+I +G+C  +   KAL  L+EM + G  P   
Sbjct: 75  CKAGMLAEAESYLKRMPQHCAPNVVSYNIIIDGYCKARNIEKALAFLREMEELGHPPTPH 134

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            Y+ +++ + + G + +A   F EM  + CE D+V +  ++ G     +I  AR +F  M
Sbjct: 135 AYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSM 194

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            + G  P V TYN MI  LCK   ++ A+ + E M  +   P   TY  +I  LC    +
Sbjct: 195 NSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFARL 254

Query: 364 ERALEFVGRMKDDEC-------------------------------------EPNVQTYN 386
           ++A E   +M +  C                                      P V TYN
Sbjct: 255 QQAYEVFEKMAEGPCPCTEPAYSVLILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYN 314

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            L+       +++  +EL   M   V  PN+ TY ILISS+    K+D +  A KLL  M
Sbjct: 315 TLLEGLLSTAKLQDAMELTYFMLDQVPAPNMFTYEILISSLC---KTDQVEEAFKLLSAM 371

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
            D+GF+P    +  +L+ L   G    A E+ +  SR
Sbjct: 372 RDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKEMSR 408



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 177/360 (49%), Gaps = 6/360 (1%)

Query: 135 GPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN 194
            P   ++ II + Y  A   ++A+     M E G   + +++++I+   CK   V KA +
Sbjct: 95  APNVVSYNIIIDGYCKARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMD 154

Query: 195 LFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
           +F     K  + D++++NV+ +G    ++ ++A E+ + M  RG  P++ TYN ++ G  
Sbjct: 155 VFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLC 214

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
           +  +++EA      MK+       VTYTT++        +++A  VF+ M  G    +  
Sbjct: 215 KWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKMAEGPCPCTEP 274

Query: 314 TYNAMIQV--LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
            Y+ +I +  LCK      A  +F+EM G+G  P   TYN ++ GL  T +++ A+E   
Sbjct: 275 AYSVLILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTY 334

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
            M D    PN+ TY ILI   C   ++E   +L   M     +P+L  + +L+S +    
Sbjct: 335 FMLDQVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAG 394

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           + DD   A +L  EM          + N +L+G+L  G+   AK+ L+  +  G +P +F
Sbjct: 395 RLDD---AFELYKEMSRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTGIVPDKF 451



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 118/255 (46%), Gaps = 4/255 (1%)

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           +A  +++EM   G +P++ ++ ++++G+F++G  +        M +     + + Y  ++
Sbjct: 12  QAEAIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYNNLI 71

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
                 G +  A +    M      P+V +YN +I   CK  ++E A+    EM   G+ 
Sbjct: 72  SCLCKAGMLAEAESYLKRMPQ-HCAPNVVSYNIIIDGYCKARNIEKALAFLREMEELGHP 130

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           P    Y+ +++  C TG + +A++    M    CEP++  +N+L+     A +I    EL
Sbjct: 131 PTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEAREL 190

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           F  M S  C P++ TYN +I+ +   KK D+ +    LL  M      P   T+  +++ 
Sbjct: 191 FRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVF---LLERMKQEDVSPTFVTYTTLIDH 247

Query: 465 LLLIGNQGLAKEILR 479
           L        A E+  
Sbjct: 248 LCKFARLQQAYEVFE 262



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 107/217 (49%), Gaps = 4/217 (1%)

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           ++    A  + +A     EMK      DV ++  ++ GF   G  +R  +  D M+  G+
Sbjct: 1   IRKLVEADLVAQAEAIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGL 60

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
            P+   YN +I  LCK   +  A    + M  +   PN  +YN++I G C    +E+AL 
Sbjct: 61  FPNAILYNNLISCLCKAGMLAEAESYLKRM-PQHCAPNVVSYNIIIDGYCKARNIEKALA 119

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
           F+  M++    P    Y+ +++ FC  G + + +++F +M +  C P++  +N+L+S ++
Sbjct: 120 FLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLW 179

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
             +K  +   A +L   M  RG  P   T+N ++ GL
Sbjct: 180 RARKIHE---ARELFRSMNSRGCKPDVVTYNTMIAGL 213



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 4/160 (2%)

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           I+ L + D V  A  + EEM   G+ P+  ++ ++IRG   +G  +R    + RM +   
Sbjct: 1   IRKLVEADLVAQAEAIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGL 60

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
            PN   YN LI   C AG +       ++M    C PN+ +YNI+I       K+ ++  
Sbjct: 61  FPNAILYNNLISCLCKAGMLAEAESYLKRMPQH-CAPNVVSYNIIIDGYC---KARNIEK 116

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           A   L EM + G  P    ++ ++      GN   A ++ 
Sbjct: 117 ALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVF 156


>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
          Length = 883

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 103/370 (27%), Positives = 178/370 (48%), Gaps = 20/370 (5%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++  M + +  P   T+ I+ +R    GK + A  +F  M +HG    + +FN +++  C
Sbjct: 322 MLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYC 381

Query: 185 KEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           KE  V  A+ L  V  +G  K ++ +YN +  G C V ++ KA  +L+ +VD GL P+  
Sbjct: 382 KEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRV 441

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYNI++ G+ + GQ+  A+  F  M     E D  T+T ++ G   +G +++A  +   M
Sbjct: 442 TYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSM 501

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           V  G+     T+ A+I   CK    ++   +FE MV    +  + T+N  +  L    ++
Sbjct: 502 VKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKL 561

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             A   +G+M      P+V T+ ILI   C AGE    L++ E+M    C PN+ TY I+
Sbjct: 562 NEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTII 621

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I+ +    + ++   A  +L  M   G  P  FT+                  +++   +
Sbjct: 622 INGLCNNGRVEE---AETILFSMSSFGVSPNHFTY----------------AVLVKAHVK 662

Query: 484 CGRLPRQFKL 493
            GRL R F++
Sbjct: 663 AGRLDRAFQI 672



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 111/442 (25%), Positives = 193/442 (43%), Gaps = 81/442 (18%)

Query: 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH 167
           H +  A RL +    + L   M      P+ +T+ ++ +     G  D+A+K+   M   
Sbjct: 273 HGLCEAGRLEE---AFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATK 329

Query: 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLFK------------------------------ 197
            C  +++++  ++D LC+E K+E+A  +F+                              
Sbjct: 330 ACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSA 389

Query: 198 ------VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
                 + +G  K ++ +YN +  G C V ++ KA  +L+ +VD GL P+  TYNI++ G
Sbjct: 390 FQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDG 449

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
           + + GQ+  A+  F  M     E D  T+T ++ G   +G +++A  +   MV  G+   
Sbjct: 450 FCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLD 509

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMV------------------GKGY---------- 343
             T+ A+I   CK    ++   +FE MV                  GK Y          
Sbjct: 510 EVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLG 569

Query: 344 -------MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
                  +P+  T+ ++I G C  GE   +L+ + RMK   C PNV TY I+I   C+ G
Sbjct: 570 KMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNG 629

Query: 397 EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
            +E    +   M S    PN  TY +L+ +     K+  L  A +++  MV  G  P   
Sbjct: 630 RVEEAETILFSMSSFGVSPNHFTYAVLVKA---HVKAGRLDRAFQIVSTMVKNGCQPNSH 686

Query: 457 TFNRVLNGLLL----IGNQGLA 474
            ++ +L+G +L    IG + L+
Sbjct: 687 IYSALLSGFVLSNTAIGARALS 708



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 125/451 (27%), Positives = 197/451 (43%), Gaps = 40/451 (8%)

Query: 58  QTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARL- 116
           +TL   + H TP L  +II    N+    + FF  +    +Y +     D  I L   L 
Sbjct: 58  KTLKSLASHMTPHLAGKIIGLQSNNVELGVRFFKWVCRQSSYCY---DLDGRIQLLGVLV 114

Query: 117 -RDY-----RTVWTLVHR-----------MKSLSLGPTQKTFAIIAERY----VSAGKAD 155
            RD      + V  L+             M +L  G T+  F +    Y    +   K +
Sbjct: 115 SRDLFGVAQKAVVLLIQECEDSENGVVKLMGALD-GMTELGFRLSYPCYSTLLMCLAKLN 173

Query: 156 RAVKIFL---SMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF--KVFRGKFKAD--VI 208
                FL    M   G       + T+++ LCK   V+ A  +F  KV R  F  D  V 
Sbjct: 174 MGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAA-EMFCCKVLRLGFGLDTHVC 232

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMV-DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           +  V+AN  C      +A  V ++M  +    PN  TY+I++ G   AG++EEA++   E
Sbjct: 233 TSLVLAN--CRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQE 290

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M ++ C+    TYT ++     +G   +A  + D M     +P+V TY  +I  LC++  
Sbjct: 291 MVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGK 350

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
           +E A  VF +M+  G  P   T+N +I G C  G +  A + +  M+   C+PN++TYN 
Sbjct: 351 IEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNE 410

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           L+   C   +  +   L  ++     LP+  TYNIL+       K   L +A  +   M 
Sbjct: 411 LMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFC---KEGQLNMAFNIFNSMN 467

Query: 448 DRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
             G  P  FTF  +++GL  +G    A  IL
Sbjct: 468 SAGLEPDGFTFTALIDGLCKLGRLEQANGIL 498



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 153/308 (49%), Gaps = 13/308 (4%)

Query: 184 CKEKKVEKAYNLFKVFRGK--FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           C+   + +A+ +F+    +   + + ++Y+++ +G C   R  +A ++ +EMV++G  P+
Sbjct: 240 CRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPS 299

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
             TY +++K     G  ++A +   EM  + C  +V TYT ++      G+I+ A  VF 
Sbjct: 300 TRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFR 359

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M+  G+ P + T+NA+I   CK+  V +A  +   M      PN  TYN ++ GLC   
Sbjct: 360 KMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVS 419

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
           +  +A   + R+ D+   P+  TYNIL+  FC  G++     +F  M S    P+  T+ 
Sbjct: 420 KSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFT 479

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL- 480
            LI  +    K   L  A  +L  MV +G    + TF  +++G   IG    AK++  L 
Sbjct: 480 ALIDGLC---KLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGK---AKDVCFLF 533

Query: 481 ----QSRC 484
               ++RC
Sbjct: 534 ENMVENRC 541



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 163/373 (43%), Gaps = 40/373 (10%)

Query: 156 RAVKIFLSMH-EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVI 213
            A ++F  M  E  CR +  +++ ++  LC+  ++E+A+ L +    K  +    +Y V+
Sbjct: 247 EAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVL 306

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
               C +  T+KA+++L EM  +   PN+ TY I++    R G+IEEA   F +M K   
Sbjct: 307 IKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGL 366

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
              ++T+  +++G+   G +  A  +   M  G   P++ TYN +++ LC+      A L
Sbjct: 367 CPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFL 426

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           +   +V  G +P+  TYN+++ G C  G++  A      M     EP+  T+  LI   C
Sbjct: 427 LLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLC 486

Query: 394 DAGEIE-----------RGLE------------------------LFEKMGSGVCLPNLD 418
             G +E           +G+                         LFE M    CL    
Sbjct: 487 KLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAH 546

Query: 419 TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           T+N  + ++    K   L  A  +L +M+  G +P   T   ++ G    G   L+ ++L
Sbjct: 547 TFNCFLDAL---GKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKML 603

Query: 479 RLQSRCGRLPRQF 491
               + G  P  +
Sbjct: 604 ERMKQAGCSPNVY 616



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 96/418 (22%), Positives = 172/418 (41%), Gaps = 33/418 (7%)

Query: 62  CPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDY 119
           CP +     L++   K  W      +  F +LS        P+  +++  ++   R+   
Sbjct: 367 CPGIITFNALINGYCKEGW-----VVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKS 421

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
              + L+ R+    L P + T+ I+ + +   G+ + A  IF SM+  G      +F  +
Sbjct: 422 YKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTAL 481

Query: 180 LDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           +D LCK  ++E+A  +   + +     D +++  + +G C + +      + + MV+   
Sbjct: 482 IDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRC 541

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
                T+N  L    +  ++ EA     +M K      VVT+T ++ G    GE   +  
Sbjct: 542 LTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLK 601

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
           + + M   G  P+V TY  +I  LC    VE A  +   M   G  PN  TY V+++   
Sbjct: 602 MLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHV 661

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILI------------RYFCDAGEIERGLELFE 406
             G ++RA + V  M  + C+PN   Y+ L+            R     G+++    L  
Sbjct: 662 KAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLD-ARSLSS 720

Query: 407 KMGSGVCL---------PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
           +     CL         P  D YN L+  +    K   ++ A +L  +MV  G  P K
Sbjct: 721 EENDNNCLSNEIKKCGVPTEDLYNFLVVGLC---KEGRIIEADQLTQDMVKHGLFPDK 775



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/377 (21%), Positives = 152/377 (40%), Gaps = 59/377 (15%)

Query: 90  FNILSYHPTYAHSPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
           FNI +   +    P  F     ID   +L        ++  M    +   + TF  + + 
Sbjct: 460 FNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDG 519

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA---------YNLFK- 197
           +   GKA     +F +M E+ C  + ++FN  LD L K+ K+ +A         Y L   
Sbjct: 520 HCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPS 579

Query: 198 ------VFRGKFKA--------------------DVISYNVIANGWCLVKRTNKALEVLK 231
                 +  G  +A                    +V +Y +I NG C   R  +A  +L 
Sbjct: 580 VVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILF 639

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
            M   G++PN  TY +++K + +AG+++ A++    M K  C+ +   Y+ ++ GF +  
Sbjct: 640 SMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSN 699

Query: 292 EIKRAR--------------------NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
               AR                    N     +    +P+   YN ++  LCK+  +  A
Sbjct: 700 TAIGARALSSTGDLDARSLSSEENDNNCLSNEIKKCGVPTEDLYNFLVVGLCKEGRIIEA 759

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
             + ++MV  G  P+    ++ I   C T + +  LEF+  + D++  P+  +Y  +I  
Sbjct: 760 DQLTQDMVKHGLFPDKAISSI-IEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHG 818

Query: 392 FCDAGEIERGLELFEKM 408
             + G ++   +L   +
Sbjct: 819 LRNEGRVQEAQKLVSDL 835


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/278 (32%), Positives = 155/278 (55%), Gaps = 4/278 (1%)

Query: 175 SFNTILDLLCKEKKVEKAYNLFKV-FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           S  T++D LCKE  V +A+++  + F+   + DV++Y  + +G CL    ++A++V   M
Sbjct: 286 SLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMM 345

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           V +G  PN+ +YN ++ GY +  ++++A   F EM ++K   + VTY T++HG   VG +
Sbjct: 346 VHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRL 405

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           + A  +F  MV  G +P + TY  ++  LCK   ++ A+ + + + G    P+   Y +V
Sbjct: 406 QDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIV 465

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           I G+C  GE+E A +    +     +PNV TYNI+    C  G ++   +LF +M    C
Sbjct: 466 IDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENAC 525

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
             +  TYN  I+  F+R  +++   A +LL EM+ RGF
Sbjct: 526 SADGCTYNT-ITQGFLR--NNETSRAIQLLEEMLARGF 560



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 121/475 (25%), Positives = 206/475 (43%), Gaps = 84/475 (17%)

Query: 80  WNHALKALHFFN-ILSYHPTYAHSPSSFDHAIDLAA--RLRDYRTVWTLVHRMKSLSLGP 136
           +N    AL  FN +L  HP     PS  D A  L +  +++ Y TV +L  +M S  +  
Sbjct: 52  FNTLDDALSSFNRMLHMHP----PPSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPH 107

Query: 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF 196
              T  ++   +    + + A  +   + + GC+    SF T++  LC E ++ +A +LF
Sbjct: 108 NVYTLNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLF 167

Query: 197 -KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLK------------------------ 231
            K+    F+ DV+ Y  + NG C    T+ A+ +L+                        
Sbjct: 168 DKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKD 227

Query: 232 -----------EMVDRGLNPNLTTYN---------------------------------- 246
                      EM+ +G++PN+ T N                                  
Sbjct: 228 RQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISL 287

Query: 247 -IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
             V+    + G + +A      M +   E DVVTYT ++ G  +  E+  A  VFD MV+
Sbjct: 288 TTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVH 347

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G  P+V +YN +I   CK + ++ A+ +FEEM  +  +PN+ TYN +I GLCH G ++ 
Sbjct: 348 KGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQD 407

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           A+     M      P++ TY IL+ Y C    +++ + L + +      P++  Y I+I 
Sbjct: 408 AIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVID 467

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
            M    ++ +L  A  L   +  +G  P  +T+N + +GL     +GL  E  +L
Sbjct: 468 GMC---RAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLC---KRGLLDEATKL 516



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 170/367 (46%), Gaps = 39/367 (10%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P    +A +       G    A+++  SM +  C+  +  + T++  LCK+++  +A+NL
Sbjct: 177 PDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNL 236

Query: 196 F------------------------------------KVFRGKFKADVISYNVIANGWCL 219
           F                                    ++   K   + IS   + +  C 
Sbjct: 237 FSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCK 296

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
                +A +V+  M   G+ P++ TY  ++ G+    +++EA + F  M  + C  +V +
Sbjct: 297 EGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFS 356

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y T+++G+  +  + +A  +F+ M    ++P+  TYN +I  LC    +++AI +F EMV
Sbjct: 357 YNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMV 416

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             G +P+  TY +++  LC    +++A+  +  ++    +P++Q Y I+I   C AGE+E
Sbjct: 417 ACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELE 476

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
              +LF  + S    PN+ TYNI+   +  R   D+   A KL +EM +        T+N
Sbjct: 477 DARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDE---ATKLFMEMDENACSADGCTYN 533

Query: 460 RVLNGLL 466
            +  G L
Sbjct: 534 TITQGFL 540



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 157/325 (48%), Gaps = 10/325 (3%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           +V  M    + P   T+  + + +    + D AVK+F  M   GC  ++ S+NT+++  C
Sbjct: 306 VVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYC 365

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K ++++KA  LF+ + R K   + ++YN + +G C V R   A+ + +EMV  G  P+L 
Sbjct: 366 KIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLV 425

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY I+L    +   +++A      ++    + D+  YT ++ G    GE++ AR++F  +
Sbjct: 426 TYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNL 485

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            + G+ P+V TYN M   LCK+  ++ A  +F EM       +  TYN + +G     E 
Sbjct: 486 SSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTYNTITQGFLRNNET 545

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
            RA++ +  M       +V T  +L+    D G  +      E M   + +   DT    
Sbjct: 546 SRAIQLLEEMLARGFSCDVSTTTLLVGMLSDDGLDQSEAHKLEDMFPHLRIQVKDT---- 601

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVD 448
                V  K DD+   GK++ ++ D
Sbjct: 602 -----VFCKEDDINALGKVISDLND 621


>gi|255568998|ref|XP_002525469.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535282|gb|EEF36959.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 581

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 197/408 (48%), Gaps = 10/408 (2%)

Query: 50  STDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHA 109
           S +P  +   +    +  + +LV +++ R+ N    A  FF        Y+HS   +   
Sbjct: 108 SGNPVEMKNKIEHCGVKVSRELVLEVLSRIRNDWEAAFTFFLWAGRQLGYSHSVREYHAM 167

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLG---PTQKTFAIIAERYVSAGKADRAVKIFLSMHE 166
           I +  ++R + T W L+  M+ +  G    T +T  I+  +Y +     RA+  F +   
Sbjct: 168 ISILGKMRKFDTAWALIDEMRGVKTGISLVTPQTLLIMIRKYCAVHDVGRAINTFYAHKR 227

Query: 167 HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWC-LVKRTNK 225
                 ++ F ++L  LC+ K V+ A +L    +  F  +  S+N++ NGWC ++    +
Sbjct: 228 FKFDLGIDEFQSLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIVLNGWCNVIGSPRE 287

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
           A  + +EM  R ++ ++ +Y  ++  Y +AG + + ++ + +MK+   E D   Y +++ 
Sbjct: 288 ADRIWREMCKRRIHYDVVSYASIISCYSKAGNLYKVFKLYNQMKEVGIEPDRKIYNSVIF 347

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
                  +  A N+   M   G+ P+  TYN++I+ LC+   ++ A  +F+EM+  G+ P
Sbjct: 348 ALAKGRHVSEAINLMKTMEEKGIAPNTVTYNSLIKPLCRARKIDEARGLFDEMLQHGHSP 407

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
              TY+   R L  TGE   AL  +  M+   C P + TY +LIR FC   + +   +L+
Sbjct: 408 TIRTYHAFFRSL-RTGEEVFAL--LENMRKLGCHPTIDTYIMLIRKFCRWRQFDDVFKLW 464

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
            ++      P+  +Y +LI  +F+  K ++   A K   +M ++  +P
Sbjct: 465 NQISENGLGPDRSSYIVLIHGLFLNGKLEE---AYKFYADMKEKQLLP 509


>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial [Vitis vinifera]
          Length = 876

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/370 (27%), Positives = 178/370 (48%), Gaps = 20/370 (5%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++  M + +  P   T+ I+ +R    GK + A  +F  M +HG    + +FN +++  C
Sbjct: 299 MLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYC 358

Query: 185 KEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           KE  V  A+ L  V  +G  K ++ +YN +  G C V ++ KA  +L+ +VD GL P+  
Sbjct: 359 KEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRV 418

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYNI++ G+ + GQ+  A+  F  M     E D  T+T ++ G   +G +++A  +   M
Sbjct: 419 TYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSM 478

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           V  G+     T+ A+I   CK    ++   +FE MV    +  + T+N  +  L    ++
Sbjct: 479 VKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKL 538

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             A   +G+M      P+V T+ ILI   C AGE    L++ E+M    C PN+ TY I+
Sbjct: 539 NEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTII 598

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I+ +    + ++   A  +L  M   G  P  FT+                  +++   +
Sbjct: 599 INGLCNNGRVEE---AETILFSMSSFGVSPNHFTY----------------AVLVKAHVK 639

Query: 484 CGRLPRQFKL 493
            GRL R F++
Sbjct: 640 AGRLDRAFQI 649



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 111/442 (25%), Positives = 193/442 (43%), Gaps = 81/442 (18%)

Query: 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH 167
           H +  A RL +    + L   M      P+ +T+ ++ +     G  D+A+K+   M   
Sbjct: 250 HGLCEAGRLEE---AFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATK 306

Query: 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLFK------------------------------ 197
            C  +++++  ++D LC+E K+E+A  +F+                              
Sbjct: 307 ACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSA 366

Query: 198 ------VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
                 + +G  K ++ +YN +  G C V ++ KA  +L+ +VD GL P+  TYNI++ G
Sbjct: 367 FQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDG 426

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
           + + GQ+  A+  F  M     E D  T+T ++ G   +G +++A  +   MV  G+   
Sbjct: 427 FCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLD 486

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMV------------------GKGY---------- 343
             T+ A+I   CK    ++   +FE MV                  GK Y          
Sbjct: 487 EVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLG 546

Query: 344 -------MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
                  +P+  T+ ++I G C  GE   +L+ + RMK   C PNV TY I+I   C+ G
Sbjct: 547 KMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNG 606

Query: 397 EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
            +E    +   M S    PN  TY +L+ +     K+  L  A +++  MV  G  P   
Sbjct: 607 RVEEAETILFSMSSFGVSPNHFTYAVLVKA---HVKAGRLDRAFQIVSTMVKNGCQPNSH 663

Query: 457 TFNRVLNGLLL----IGNQGLA 474
            ++ +L+G +L    IG + L+
Sbjct: 664 IYSALLSGFVLSNTAIGARALS 685



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 125/451 (27%), Positives = 197/451 (43%), Gaps = 40/451 (8%)

Query: 58  QTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARL- 116
           +TL   + H TP L  +II    N+    + FF  +    +Y +     D  I L   L 
Sbjct: 35  KTLKSLASHMTPHLAGKIIGLQSNNVELGVRFFKWVCRQSSYCY---DLDGRIQLLGVLV 91

Query: 117 -RDY-----RTVWTLVHR-----------MKSLSLGPTQKTFAIIAERY----VSAGKAD 155
            RD      + V  L+             M +L  G T+  F +    Y    +   K +
Sbjct: 92  SRDLFGVAQKAVVLLIQECEDSENGVVKLMGALD-GMTELGFRLSYPCYSTLLMCLAKLN 150

Query: 156 RAVKIFL---SMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF--KVFRGKFKAD--VI 208
                FL    M   G       + T+++ LCK   V+ A  +F  KV R  F  D  V 
Sbjct: 151 MGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAA-EMFCCKVLRLGFGLDTHVC 209

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMV-DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           +  V+AN  C      +A  V ++M  +    PN  TY+I++ G   AG++EEA++   E
Sbjct: 210 TSLVLAN--CRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQE 267

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M ++ C+    TYT ++     +G   +A  + D M     +P+V TY  +I  LC++  
Sbjct: 268 MVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGK 327

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
           +E A  VF +M+  G  P   T+N +I G C  G +  A + +  M+   C+PN++TYN 
Sbjct: 328 IEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNE 387

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           L+   C   +  +   L  ++     LP+  TYNIL+       K   L +A  +   M 
Sbjct: 388 LMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFC---KEGQLNMAFNIFNSMN 444

Query: 448 DRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
             G  P  FTF  +++GL  +G    A  IL
Sbjct: 445 SAGLEPDGFTFTALIDGLCKLGRLEQANGIL 475



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 153/308 (49%), Gaps = 13/308 (4%)

Query: 184 CKEKKVEKAYNLFKVFRGK--FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           C+   + +A+ +F+    +   + + ++Y+++ +G C   R  +A ++ +EMV++G  P+
Sbjct: 217 CRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPS 276

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
             TY +++K     G  ++A +   EM  + C  +V TYT ++      G+I+ A  VF 
Sbjct: 277 TRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFR 336

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M+  G+ P + T+NA+I   CK+  V +A  +   M      PN  TYN ++ GLC   
Sbjct: 337 KMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVS 396

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
           +  +A   + R+ D+   P+  TYNIL+  FC  G++     +F  M S    P+  T+ 
Sbjct: 397 KSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFT 456

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL- 480
            LI  +    K   L  A  +L  MV +G    + TF  +++G   IG    AK++  L 
Sbjct: 457 ALIDGLC---KLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGK---AKDVCFLF 510

Query: 481 ----QSRC 484
               ++RC
Sbjct: 511 ENMVENRC 518



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 163/373 (43%), Gaps = 40/373 (10%)

Query: 156 RAVKIFLSMH-EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVI 213
            A ++F  M  E  CR +  +++ ++  LC+  ++E+A+ L +    K  +    +Y V+
Sbjct: 224 EAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVL 283

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
               C +  T+KA+++L EM  +   PN+ TY I++    R G+IEEA   F +M K   
Sbjct: 284 IKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGL 343

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
              ++T+  +++G+   G +  A  +   M  G   P++ TYN +++ LC+      A L
Sbjct: 344 CPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFL 403

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           +   +V  G +P+  TYN+++ G C  G++  A      M     EP+  T+  LI   C
Sbjct: 404 LLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLC 463

Query: 394 DAGEIE-----------RGLE------------------------LFEKMGSGVCLPNLD 418
             G +E           +G+                         LFE M    CL    
Sbjct: 464 KLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAH 523

Query: 419 TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           T+N  + ++    K   L  A  +L +M+  G +P   T   ++ G    G   L+ ++L
Sbjct: 524 TFNCFLDAL---GKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKML 580

Query: 479 RLQSRCGRLPRQF 491
               + G  P  +
Sbjct: 581 ERMKQAGCSPNVY 593



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 145/334 (43%), Gaps = 8/334 (2%)

Query: 62  CPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDY 119
           CP +     L++   K  W      +  F +LS        P+  +++  ++   R+   
Sbjct: 344 CPGIITFNALINGYCKEGW-----VVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKS 398

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
              + L+ R+    L P + T+ I+ + +   G+ + A  IF SM+  G      +F  +
Sbjct: 399 YKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTAL 458

Query: 180 LDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           +D LCK  ++E+A  +   + +     D +++  + +G C + +      + + MV+   
Sbjct: 459 IDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRC 518

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
                T+N  L    +  ++ EA     +M K      VVT+T ++ G    GE   +  
Sbjct: 519 LTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLK 578

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
           + + M   G  P+V TY  +I  LC    VE A  +   M   G  PN  TY V+++   
Sbjct: 579 MLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHV 638

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
             G ++RA + V  M  + C+PN   Y+ L+  F
Sbjct: 639 KAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGF 672



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/394 (21%), Positives = 156/394 (39%), Gaps = 77/394 (19%)

Query: 90  FNILSYHPTYAHSPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
           FNI +   +    P  F     ID   +L        ++  M    +   + TF  + + 
Sbjct: 437 FNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDG 496

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA---------YNLFK- 197
           +   GKA     +F +M E+ C  + ++FN  LD L K+ K+ +A         Y L   
Sbjct: 497 HCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPS 556

Query: 198 ------VFRGKFKA--------------------DVISYNVIANGWCLVKRTNKALEVLK 231
                 +  G  +A                    +V +Y +I NG C   R  +A  +L 
Sbjct: 557 VVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILF 616

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF---- 287
            M   G++PN  TY +++K + +AG+++ A++    M K  C+ +   Y+ ++ GF    
Sbjct: 617 SMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSN 676

Query: 288 GVVG---------------------------------EIKRARNVFDGMVNGGVLPSVAT 314
             +G                                 ++  A  + D +   GV P+   
Sbjct: 677 TAIGARALSSTGDLDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGV-PTEDL 735

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN ++  LCK+  +  A  + ++MV  G  P+    ++ I   C T + +  LEF+  + 
Sbjct: 736 YNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDKAISSI-IEHYCKTCKYDNCLEFMKLVL 794

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           D++  P+  +Y  +I    + G ++   +L   +
Sbjct: 795 DNKFVPSFASYCWVIHGLRNEGRVQEAQKLVSDL 828


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 170/343 (49%), Gaps = 4/343 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           PT  T+ I+ E  +  G  + A+K+   M   G    + ++N I+  +CKE  VE+A  L
Sbjct: 205 PTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAEL 264

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
                 K  K DVISYN++   +    + ++  +++ EM  RG  PN  TY+I++    R
Sbjct: 265 ITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCR 324

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G+I+EA      M +++   D  +Y  ++      G +  A  + D M++ G LP +  
Sbjct: 325 FGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVN 384

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN ++  LCK  +   A+ +F ++ G G  PN ++YN +I  L   G+  RAL  V  M 
Sbjct: 385 YNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMI 444

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
               +P+  TYN LI   C  G +E  + L + M      P + +YNI++  +   ++ D
Sbjct: 445 SKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRID 504

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
           D   A  +  EM+++G  P + T+  ++ G+   G +  A E+
Sbjct: 505 D---AIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMEL 544



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 147/292 (50%), Gaps = 3/292 (1%)

Query: 187 KKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
           K +EKA  + ++     + DV +YN + +G+C V R   A +VL  M  RG  P++ TYN
Sbjct: 117 KNIEKASRVMEILESHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYN 176

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
           I++       ++  A +   ++    C   V+TYT ++    V G I  A  + + M+  
Sbjct: 177 IMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLAR 236

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G+LP + TYNA+I+ +CK+  VE A  +   +  KG  P+  +YN+++R   + G+ +  
Sbjct: 237 GLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEG 296

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
            + V  M    CEPN  TY+ILI   C  G I+  + + + M      P+  +Y+ LIS+
Sbjct: 297 EKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISA 356

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           +    + D   +A  ++  M+  G +P    +N +L  L   GN   A EI 
Sbjct: 357 LCKEGRLD---LAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIF 405



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 170/346 (49%), Gaps = 7/346 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P    +  +   +    + + A ++   M   G    + ++N ++  LC  +K+  A  +
Sbjct: 135 PDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKV 194

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             ++        VI+Y ++     +    N+A+++L+EM+ RGL P++ TYN +++G  +
Sbjct: 195 LDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCK 254

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G +E A      +  + C+ DV++Y  ++  F   G+      +   M + G  P+  T
Sbjct: 255 EGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVT 314

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y+ +I  LC+   ++ AI V + M+ K   P++ +Y+ +I  LC  G ++ A+  +  M 
Sbjct: 315 YSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMI 374

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
            + C P++  YN ++   C  G   + LE+F K+    C PN+ +YN +IS+++      
Sbjct: 375 SNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALW---SCG 431

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           D   A  ++  M+ +G  P + T+N +++ L      GL +E + L
Sbjct: 432 DRSRALGMVPAMISKGVDPDEITYNSLISCLC---RDGLVEEAIGL 474



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 139/287 (48%), Gaps = 1/287 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  + S    P   ++ I+   +++ GK D   K+   M   GC  +  +++ ++  LC
Sbjct: 264 LITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLC 323

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           +  ++++A ++ KV   K    D  SY+ + +  C   R + A+ ++  M+  G  P++ 
Sbjct: 324 RFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIV 383

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            YN +L    + G   +A   F +++   C  +V +Y T++      G+  RA  +   M
Sbjct: 384 NYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAM 443

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           ++ GV P   TYN++I  LC+   VE AI + ++M   G+ P   +YN+V+ GLC    +
Sbjct: 444 ISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRI 503

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           + A+     M +  C PN  TY +LI     AG     +EL   + S
Sbjct: 504 DDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSLFS 550



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 154/321 (47%), Gaps = 2/321 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M +  L P   T+  I       G  +RA ++  S+   GC+  + S+N +L    
Sbjct: 229 LLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFL 288

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            + K ++   L  ++F    + + ++Y+++ +  C   R ++A+ VLK M+++ L P+  
Sbjct: 289 NQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTY 348

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           +Y+ ++    + G+++ A      M    C  D+V Y TI+      G   +A  +F+ +
Sbjct: 349 SYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKL 408

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G  P+V++YN MI  L        A+ +   M+ KG  P+  TYN +I  LC  G +
Sbjct: 409 RGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLV 468

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           E A+  +  M+     P V +YNI++   C    I+  + +F +M    C PN  TY +L
Sbjct: 469 EEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILL 528

Query: 424 ISSM-FVRKKSDDLLVAGKLL 443
           I  + F   +++ + +A  L 
Sbjct: 529 IEGIGFAGWRTEAMELANSLF 549



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 128/304 (42%), Gaps = 72/304 (23%)

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYT-------------------------------- 281
           +AG+  E+  F   +  +    DV+  T                                
Sbjct: 80  KAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHTEPDVFA 139

Query: 282 --TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK-------------- 325
              ++ GF  V  I+ A  V + M   G LP + TYN MI  LC +              
Sbjct: 140 YNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLL 199

Query: 326 ---------------------DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
                                  +  A+ + EEM+ +G +P+  TYN +IRG+C  G +E
Sbjct: 200 LDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVE 259

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
           RA E +  +    C+P+V +YNIL+R F + G+ + G +L  +M S  C PN  TY+ILI
Sbjct: 260 RAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILI 319

Query: 425 SSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484
           SS+    + D+ +   K++IE   +   P  ++++ +++ L   G   LA  I+      
Sbjct: 320 SSLCRFGRIDEAISVLKVMIE---KELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISN 376

Query: 485 GRLP 488
           G LP
Sbjct: 377 GCLP 380



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 91/199 (45%), Gaps = 14/199 (7%)

Query: 98  TYAHSP--SSF--DHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGK 153
           TY++ P  S+   +  +DLA  + DY         M S    P    +  I       G 
Sbjct: 347 TYSYDPLISALCKEGRLDLAIGIMDY---------MISNGCLPDIVNYNTILAALCKNGN 397

Query: 154 ADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNV 212
           A++A++IF  +   GC  +++S+NT++  L       +A  +      K    D I+YN 
Sbjct: 398 ANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNS 457

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           + +  C      +A+ +L +M   G  P + +YNIVL G  +  +I++A   F EM ++ 
Sbjct: 458 LISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKG 517

Query: 273 CEIDVVTYTTIVHGFGVVG 291
           C  +  TY  ++ G G  G
Sbjct: 518 CRPNETTYILLIEGIGFAG 536



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 82/190 (43%), Gaps = 37/190 (19%)

Query: 323 CKKDSVENAILVFEEMVGKGYMPNST---------------------------------- 348
           CK      ++   E +V KGY P+                                    
Sbjct: 79  CKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHTEPDVF 138

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            YN VI G C    +E A + + RMK     P++ TYNI+I   C+  ++   L++ +++
Sbjct: 139 AYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQL 198

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
               C+P + TY ILI +  V    ++   A KLL EM+ RG +P  +T+N ++ G+   
Sbjct: 199 LLDNCMPTVITYTILIEATIVEGGINE---AMKLLEEMLARGLLPDMYTYNAIIRGMCKE 255

Query: 469 GNQGLAKEIL 478
           G    A E++
Sbjct: 256 GMVERAAELI 265


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/359 (27%), Positives = 176/359 (49%), Gaps = 4/359 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   ++      + L+  M S  + P   ++ +I       G    A +I   M
Sbjct: 251 TYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEM 310

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
              G      ++NT+L+  CKE    +A  +  ++ R      V++Y  + N  C  +  
Sbjct: 311 GYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNL 370

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           N+A+E   +M  RGL PN  TY  ++ G+ R G + EA+R   EM +      VVTY   
Sbjct: 371 NRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAF 430

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +HG  V+  ++ A  V   MV  G+ P V +Y+ +I   C+K  ++ A  + +EMV KG 
Sbjct: 431 IHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGV 490

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P++ TY+ +I+GLC    +  A +    M D    P+  TY  LI  +C  G++ + L 
Sbjct: 491 SPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALH 550

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           L ++M     LP+  TY++LI+ +  + ++ +   A +LL +++    +P   T++ ++
Sbjct: 551 LHDEMIHKGFLPDAVTYSVLINGLNKQARTRE---AKRLLFKLIYEESVPSDVTYDTLI 606



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/375 (27%), Positives = 184/375 (49%), Gaps = 7/375 (1%)

Query: 94  SYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGK 153
           SYH  Y  S + FD  +   + L         ++  KS    P   ++  + +  V +  
Sbjct: 134 SYH-VYNSSSAVFDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRG 192

Query: 154 ADR--AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISY 210
           + +  A +++  M       ++ ++N ++   C   +++K    F ++ R     +V++Y
Sbjct: 193 SVKLSAEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTY 252

Query: 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
           N + + +C + R ++A  +LK M  +G+ PNL +YN+++ G  R G ++EAW    EM  
Sbjct: 253 NTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGY 312

Query: 271 RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
           +    D VTY T+++G+   G   +A  +   MV  GV PSV TY A+I  +CK  ++  
Sbjct: 313 KGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNR 372

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           A+  F++M  +G  PN  TY  +I G    G +  A   +  M +    P+V TYN  I 
Sbjct: 373 AMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIH 432

Query: 391 YFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450
             C    +E  L + ++M      P++ +Y+ +IS  F RK   D   A ++  EMV++G
Sbjct: 433 GHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISG-FCRKGELDR--AFQMKQEMVEKG 489

Query: 451 FMPRKFTFNRVLNGL 465
             P   T++ ++ GL
Sbjct: 490 VSPDAVTYSSLIQGL 504



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 180/370 (48%), Gaps = 19/370 (5%)

Query: 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
           + P+  T+  +      A   +RA++ F  M   G R +  ++ T++D   ++  + +AY
Sbjct: 350 VSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAY 409

Query: 194 NLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
            +  ++    F   V++YN   +G C+++R  +AL V++EMV++GL P++ +Y+ ++ G+
Sbjct: 410 RILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGF 469

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
            R G+++ A++   EM ++    D VTY++++ G   +  +  A ++   M++ G+ P  
Sbjct: 470 CRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDE 529

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            TY  +I   C +  +  A+ + +EM+ KG++P++ TY+V+I GL        A   + +
Sbjct: 530 FTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFK 589

Query: 373 MKDDECEPNVQTYNILI---------------RYFCDAGEIERGLELFEKMGSGVCLPNL 417
           +  +E  P+  TY+ LI               + FC  G +     +FE M      P  
Sbjct: 590 LIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGE 649

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
             YN++I       +  +L  A  L  EM+  GF+P   T   ++  L   G      E+
Sbjct: 650 AVYNVIIHG---HCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEMSEV 706

Query: 478 LRLQSRCGRL 487
           +    R  RL
Sbjct: 707 IGDTLRSCRL 716



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/402 (25%), Positives = 179/402 (44%), Gaps = 29/402 (7%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S++  I+   R    +  W ++  M      P + T+  +   Y   G   +A+ I   M
Sbjct: 286 SYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEM 345

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
             +G   S+ ++  +++ +CK + + +A   F   R +  + +  +Y  + +G+      
Sbjct: 346 VRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLL 405

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           N+A  +L EM + G +P++ TYN  + G+    ++EEA     EM ++    DVV+Y+TI
Sbjct: 406 NEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTI 465

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + GF   GE+ RA  +   MV  GV P   TY+++IQ LC+   +  A  + +EM+  G 
Sbjct: 466 ISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGL 525

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+  TY  +I   C  G++ +AL     M      P+  TY++LI              
Sbjct: 526 PPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKR 585

Query: 404 LFEKMGSGVCLPNLDTYNILISSMF-VRKKSDDLLVAG-----------KLLIEMVDRGF 451
           L  K+     +P+  TY+ LI +   +  KS   L+ G           ++   MV+R  
Sbjct: 586 LLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNH 645

Query: 452 MPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQFKL 493
            P +  +N +++G                  R G LP+ F L
Sbjct: 646 KPGEAVYNVIIHG----------------HCRGGNLPKAFNL 671



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 163/372 (43%), Gaps = 23/372 (6%)

Query: 63  PSLHWTPQLVDQIIKR-LWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRT 121
           P+      L+D   ++ L N A + L+      + P+   + ++F H   +  R+ +   
Sbjct: 387 PNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVV-TYNAFIHGHCVLERMEE--- 442

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
              +V  M    L P   +++ I   +   G+ DRA ++   M E G      ++++++ 
Sbjct: 443 ALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQ 502

Query: 182 LLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
            LC+ +++ +A +L + +       D  +Y  + N +C+    NKAL +  EM+ +G  P
Sbjct: 503 GLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLP 562

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH--------------- 285
           +  TY++++ G  +  +  EA R   ++   +     VTY T++                
Sbjct: 563 DAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIK 622

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
           GF + G +  A  VF+ MV     P  A YN +I   C+  ++  A  +++EM+  G++P
Sbjct: 623 GFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVP 682

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN-VQTYNILIRYFCDAGEIERGLEL 404
           ++ T   +I+ L   G  E   E +G      C  N  +   +L+      G +E  L +
Sbjct: 683 HTVTVITLIKALFKEGMNEEMSEVIGDTLRS-CRLNEAELAKVLVEINHKEGNMEAVLNV 741

Query: 405 FEKMGSGVCLPN 416
              M     LPN
Sbjct: 742 LTDMAKDGLLPN 753



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 91/182 (50%), Gaps = 5/182 (2%)

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT-GEMERALEF 369
           S A ++ M++     + ++ A+         G+MP   +YN V+  +  + G ++ + E 
Sbjct: 141 SSAVFDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEE 200

Query: 370 VGR-MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
           V R M      PNV TYNILIR FC  GE+++GL  F +M    CLPN+ TYN LI +  
Sbjct: 201 VYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYC 260

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
              + D+   A  LL  M  +G  P   ++N ++NGL   G+   A EIL      G  P
Sbjct: 261 KMGRIDE---AFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTP 317

Query: 489 RQ 490
            +
Sbjct: 318 DE 319


>gi|115461911|ref|NP_001054555.1| Os05g0132000 [Oryza sativa Japonica Group]
 gi|52353663|gb|AAU44229.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113578106|dbj|BAF16469.1| Os05g0132000 [Oryza sativa Japonica Group]
 gi|125550727|gb|EAY96436.1| hypothetical protein OsI_18334 [Oryza sativa Indica Group]
          Length = 637

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/425 (27%), Positives = 196/425 (46%), Gaps = 41/425 (9%)

Query: 102 SPSSFDHAIDLAARLR------DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKAD 155
            P S D A    A +R      D   V   +  M+   +  T+         +  AG AD
Sbjct: 44  DPGSGDSARHHEATVRRLAAAGDVDGVQYALQEMRLRGVACTEDALVAAIGAFARAGSAD 103

Query: 156 RAVKIFLSMHEHGCRQ-SLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVI 213
           RA+K F    + GCR   +  +N +LD L +E  V     ++   R      +V +YN++
Sbjct: 104 RALKTFYRASDLGCRDPGVRVYNHLLDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLL 163

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA------------ 261
               C   R + A ++L EM  +G +P+  ++  ++ G  + G++EEA            
Sbjct: 164 IRALCQNDRVDAARKMLDEMSRKGCHPDEVSHGTIVSGMCKLGRVEEARGFLAETVPVQA 223

Query: 262 ---------------WRFFL---EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
                          W  F    EM +R  + +VVTYTTIV  F    E++ A  +   M
Sbjct: 224 SYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARM 283

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           V+ G  P+V T+ A+++   +   V +A+ ++  MV +G+ P++ +YNV+IRGLC  G++
Sbjct: 284 VSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDL 343

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + AL+F   MK +   PN  TY+ L+  F +AG+++  + ++ +M S  C PN+  Y  +
Sbjct: 344 KGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNM 403

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I  +  +   D    A  L+ +M+     P   TFN ++  L   G  G A  +     R
Sbjct: 404 IDVLCKKMMFDQ---AESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALNVFHGMRR 460

Query: 484 CGRLP 488
            G  P
Sbjct: 461 NGCHP 465



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/392 (26%), Positives = 173/392 (44%), Gaps = 36/392 (9%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           ++H +D   R      V  +   M+   + P   T+ ++        + D A K+   M 
Sbjct: 125 YNHLLDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRALCQNDRVDAARKMLDEMS 184

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKA------------------------YNLFKVF-- 199
             GC     S  TI+  +CK  +VE+A                        + +++VF  
Sbjct: 185 RKGCHPDEVSHGTIVSGMCKLGRVEEARGFLAETVPVQASYNAVVHALCGEFRMWEVFSV 244

Query: 200 ------RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
                 RG  + +V++Y  I + +C  +    A  +L  MV  G  PN+ T+  ++KG+F
Sbjct: 245 VNEMVQRG-LQPNVVTYTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTALVKGFF 303

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
             G++ +A   +  M         ++Y  ++ G   +G++K A + F+ M    +LP+  
Sbjct: 304 EDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNAT 363

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           TY+ ++        ++ A+L++ EM   G  PN   Y  +I  LC     ++A   + +M
Sbjct: 364 TYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKM 423

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
             D C PN  T+N LI   CD G + R L +F  M    C PN  TYN L+  +F     
Sbjct: 424 LMDNCPPNTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNH 483

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            D   A  ++IEM++ GF     T+N V+N L
Sbjct: 484 KD---AFAMVIEMLNNGFELSLVTYNTVINCL 512



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 173/388 (44%), Gaps = 40/388 (10%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
           V+++V+ M    L P   T+  I + +  A +   A  I   M   GC  ++ +F  ++ 
Sbjct: 241 VFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTALVK 300

Query: 182 LLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
              ++ KV  A +++  +    +    ISYNV+  G C +     AL+    M    L P
Sbjct: 301 GFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLP 360

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT------------------- 281
           N TTY+ ++ G+  AG ++ A   + EMK   C+ +VV YT                   
Sbjct: 361 NATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLI 420

Query: 282 ----------------TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
                           T++      G + RA NVF GM   G  P+  TYN ++  L ++
Sbjct: 421 DKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFRE 480

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
            + ++A  +  EM+  G+  +  TYN VI  LC     + A+  +GRM     +P+  T+
Sbjct: 481 GNHKDAFAMVIEMLNNGFELSLVTYNTVINCLCQMCMRKHAMLLLGRMMVQGIQPDAFTF 540

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           N +I  +C  G++     L  +M +  C  N+  Y ILIS +  + K  + +V    L++
Sbjct: 541 NAIIHAYCKEGKVSIAACLLGQMNAVNCPRNVVAYTILISELCNQGKLSNAMV---YLLK 597

Query: 446 MVDRGFMPRKFTFNRVLNGLLL-IGNQG 472
           M+  G  P + T+N ++  +   IG  G
Sbjct: 598 MLYEGICPNEATWNVLVRAIFTNIGTIG 625



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 149/302 (49%), Gaps = 2/302 (0%)

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           +A S  S++  I     + D +      + MK  +L P   T++ + + + +AG  D A+
Sbjct: 323 WAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAM 382

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGW 217
            I+  M   GC+ ++  +  ++D+LCK+   ++A +L  K+       + +++N +    
Sbjct: 383 LIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRL 442

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           C   R  +AL V   M   G +PN  TYN +L G FR G  ++A+   +EM     E+ +
Sbjct: 443 CDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSL 502

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           VTY T+++    +   K A  +   M+  G+ P   T+NA+I   CK+  V  A  +  +
Sbjct: 503 VTYNTVINCLCQMCMRKHAMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLLGQ 562

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR-YFCDAG 396
           M       N   Y ++I  LC+ G++  A+ ++ +M  +   PN  T+N+L+R  F + G
Sbjct: 563 MNAVNCPRNVVAYTILISELCNQGKLSNAMVYLLKMLYEGICPNEATWNVLVRAIFTNIG 622

Query: 397 EI 398
            I
Sbjct: 623 TI 624


>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
 gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
          Length = 655

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 173/369 (46%), Gaps = 5/369 (1%)

Query: 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ 171
           L AR R       ++  M      P    + +I E     G    AV++   +H  GC  
Sbjct: 132 LCARGR-IADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCAL 190

Query: 172 SLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVL 230
            + + N +L+ +C +  V+KA +L +       + DV+SYN +  G C+ KR     E++
Sbjct: 191 DVGNCNLVLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELM 250

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
           +EMV     PN+ T+N ++    R G  E       +M +  C  D+  Y TI+ G    
Sbjct: 251 EEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKE 310

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           G +K A  + + M + G+ P+V  YN +++ LC  +  E    +  EM  K    +  T+
Sbjct: 311 GHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTF 370

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           N+++   C  G ++R +E + +M    C P+V TY  +I  FC  G I+  + L + M +
Sbjct: 371 NILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTA 430

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
             C PN  +Y I++  +   ++  D   A  L+ +M+ +G      TFN ++N L   G 
Sbjct: 431 CGCKPNTISYTIVLKGLCSAERWVD---AEDLMSQMIQQGCPLNPITFNTLINFLCKKGL 487

Query: 471 QGLAKEILR 479
              A E+L+
Sbjct: 488 VEQAIELLK 496



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 172/383 (44%), Gaps = 42/383 (10%)

Query: 85  KALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           KALH    L   P++   P   S++  +      + +  V  L+  M  ++  P   TF 
Sbjct: 210 KALHLLRDL---PSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFN 266

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK 202
            +       G  +R  ++   M EHGC   +  + TI+D +CKE  ++ A+         
Sbjct: 267 TLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAH--------- 317

Query: 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262
                                    E+L  M   GL PN+  YN +LKG   A + EE  
Sbjct: 318 -------------------------EILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETE 352

Query: 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322
               EM  + C +D VT+  +V  F   G + R   + + M+  G +P V TY  +I   
Sbjct: 353 ELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGF 412

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
           CK+  ++ A+++ + M   G  PN+ +Y +V++GLC       A + + +M    C  N 
Sbjct: 413 CKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNP 472

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
            T+N LI + C  G +E+ +EL ++M    C P+L +Y+ +I  +    K+D+ L   +L
Sbjct: 473 ITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEAL---EL 529

Query: 443 LIEMVDRGFMPRKFTFNRVLNGL 465
           L  MV++G  P    ++ + + L
Sbjct: 530 LNVMVNKGMSPNTIIYSSIASAL 552



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 128/279 (45%), Gaps = 3/279 (1%)

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           Y+VI    C       A+ VL+++  RG   ++   N+VL      G +++A     ++ 
Sbjct: 160 YHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDKALHLLRDLP 219

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
              CE DVV+Y  ++ G  +       + + + MV     P++ T+N +I  LC+    E
Sbjct: 220 SFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFE 279

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
               V  +M   G  P+   Y  +I G+C  G ++ A E + RM     +PNV  YN L+
Sbjct: 280 RVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLL 339

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
           +  C A   E   EL  +M    C  +  T+NIL+   F +    D ++  +LL +M+  
Sbjct: 340 KGLCSAERWEETEELLAEMFDKDCPLDDVTFNILV-DFFCQNGLVDRVI--ELLEQMLVH 396

Query: 450 GFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           G MP   T+  V+NG    G    A  +L+  + CG  P
Sbjct: 397 GCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKP 435



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 110/256 (42%), Gaps = 6/256 (2%)

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           YN +  G+C   +   A  +   +    + PN  TY  V++     G+I +A     EM 
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAV---PVPPNAYTYFPVVRALCARGRIADALAVLDEMP 149

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
           +R C      Y  I+      G  + A  V + +   G    V   N ++  +C + SV+
Sbjct: 150 RRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVD 209

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
            A+ +  ++   G  P+  +YN V++GLC         E +  M    C PN+ T+N LI
Sbjct: 210 KALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLI 269

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
            Y C  G  ER  E+  +M    C P++  Y  +I  +    K   L VA ++L  M   
Sbjct: 270 SYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGIC---KEGHLKVAHEILNRMPSY 326

Query: 450 GFMPRKFTFNRVLNGL 465
           G  P    +N +L GL
Sbjct: 327 GLKPNVVCYNTLLKGL 342



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 96/221 (43%), Gaps = 36/221 (16%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M +    P   ++ I+ +   SA +   A  +   M + GC  +  +FNT+++ LC
Sbjct: 424 LLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLC 483

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL- 242
           K+  VE+A  L K +       D+ISY+ + +G     +T++ALE+L  MV++G++PN  
Sbjct: 484 KKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTI 543

Query: 243 ---------------------------TT-------YNIVLKGYFRAGQIEEAWRFFLEM 268
                                      TT       YN V+    + G+ E A  F   M
Sbjct: 544 IYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYM 603

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
               C  +  TYT ++ G    G +K A+ +   + + G L
Sbjct: 604 VSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKGAL 644


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 113/405 (27%), Positives = 195/405 (48%), Gaps = 8/405 (1%)

Query: 69  PQLVDQIIKRLW--NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLV 126
           P     +++ L+   H   A H F+ +     +    ++F++ +    +  D      L+
Sbjct: 176 PAAYCTVVRGLYAHGHGYNARHLFDEMLGRDVFP-DVATFNNVLHALCQKGDVMESGALL 234

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186
            ++    +   + T  I        G+ + AV +   M  +     + ++NT++  LCK+
Sbjct: 235 AKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVALVERMGAY-VAPDVVTYNTLMRGLCKD 293

Query: 187 KKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
            KV++A   L ++       D  +YN I +G+C      +A E+LK+ V +G  P+  TY
Sbjct: 294 SKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTY 353

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
             ++ G    G IE A   F E + +  + D+V Y ++V G    G I  A  V + MV 
Sbjct: 354 CSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVE 413

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G  P + TYN +I  LCK  ++ +A +V  + + KGY+P+  T+N +I G C   +++ 
Sbjct: 414 EGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDS 473

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           AL+ V RM      P+V TYN ++   C AG+ +   E FE+M    C PN  TYNILI 
Sbjct: 474 ALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIE 533

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
           +     K + L  A  +++ M   G +P   +FN +++G    G+
Sbjct: 534 NFC---KINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGD 575



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 124/435 (28%), Positives = 186/435 (42%), Gaps = 71/435 (16%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            LV RM +  + P   T+  +        K   A +    M   GC     ++NTI+D  
Sbjct: 267 ALVERMGAY-VAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGY 325

Query: 184 CKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           CK   +++A  L K  VF+G F  D ++Y  + NG C      +ALE+  E   + L P+
Sbjct: 326 CKSGMLQEATELLKDAVFKG-FVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPD 384

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV-- 299
           L  YN ++KG  R G I  A +   EM +  C  D+ TY  I++G   +G I  A  V  
Sbjct: 385 LVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMN 444

Query: 300 -------------FDGMVNG--------------------GVLPSVATYNAMIQVLCKKD 326
                        F+ +++G                    G+ P V TYN+++  LCK  
Sbjct: 445 DAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAG 504

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
             +     FEEM+ KG  PN+ TYN++I   C   ++E A   + RM  D   P+  ++N
Sbjct: 505 KAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFN 564

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS----------------MFVR 430
            LI  FC  G+++    LF+K+         DT+NILI +                M  +
Sbjct: 565 TLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISK 624

Query: 431 KKSDDL-----LVAG-----------KLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
               DL     LV G             L EM+ +GF+P   TF R+LN L +      A
Sbjct: 625 GYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRMLNLLAMNHRVSEA 684

Query: 475 KEILRLQSRCGRLPR 489
             I+ +  R G +P 
Sbjct: 685 VAIIHIMVRMGVVPE 699



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 106/415 (25%), Positives = 182/415 (43%), Gaps = 42/415 (10%)

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
           A RL D      L      L+    Q  +    + Y  AG+   AV  F  M    C  +
Sbjct: 48  AGRLDDVDA--ALASARSHLAPDSLQPLYVASIQAYARAGRLRAAVDAFERMDLFACPPA 105

Query: 173 LNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLK 231
             ++N I+D L      ++A+ ++ ++       D  ++ V    +CL  R + AL +L+
Sbjct: 106 APAYNAIMDALVNAAYHDQAHKVYVRMLAAGVAPDARTHTVRLKSFCLTGRPHVALRLLR 165

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
            + +RG +     Y  V++G +  G    A   F EM  R    DV T+  ++H     G
Sbjct: 166 SLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEMLGRDVFPDVATFNNVLHALCQKG 225

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
           ++  +  +   ++  G+  +  T N  I+ LC+   +E A+ + E M G    P+  TYN
Sbjct: 226 DVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVALVERM-GAYVAPDVVTYN 284

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG--------------- 396
            ++RGLC   +++ A +++GRM +  C P+  TYN +I  +C +G               
Sbjct: 285 TLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFK 344

Query: 397 --------------------EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
                               +IER LELF +  +    P+L  YN L+  +    +   +
Sbjct: 345 GFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLC---RQGLI 401

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           L A +++ EMV+ G  P  +T+N ++NGL  +GN   A  ++      G LP  F
Sbjct: 402 LHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVF 456



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 115/242 (47%), Gaps = 1/242 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  ID   +     +   LV RM +  + P   T+  +      AGKA    + F  M
Sbjct: 457 TFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEM 516

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRT 223
              GCR +  ++N +++  CK  ++E+A   + ++ +     D +S+N + +G+C     
Sbjct: 517 ILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDL 576

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A  + +++ ++G +    T+NI++  Y     ++ A + F EM  +  + D+ TY  +
Sbjct: 577 DGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRIL 636

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           V G      + RA      M++ G +PS+AT+  M+ +L     V  A+ +   MV  G 
Sbjct: 637 VDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRMLNLLAMNHRVSEAVAIIHIMVRMGV 696

Query: 344 MP 345
           +P
Sbjct: 697 VP 698



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 103/223 (46%), Gaps = 6/223 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+ I+ E +    + + A  + + M + G      SFNT++   C+   ++ AY L
Sbjct: 523 PNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLL 582

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F+    K + A   ++N++   +        A ++  EM+ +G  P+L TY I++ G  +
Sbjct: 583 FQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCK 642

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
           A  ++ A+    EM  +     + T+  +++   +   +  A  +   MV  GV+P V  
Sbjct: 643 AANVDRAYAHLAEMISKGFVPSMATFGRMLNLLAMNHRVSEAVAIIHIMVRMGVVPEVVD 702

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
               I    KK+     ILV EE++ KG++ +   Y V+  G+
Sbjct: 703 ---TILSTDKKEIAAPKILV-EELMKKGHI-SYRAYEVLHEGV 740


>gi|449449910|ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Cucumis sativus]
          Length = 757

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 116/451 (25%), Positives = 210/451 (46%), Gaps = 49/451 (10%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQ---KTF 141
           KAL FFN  +    Y H+  S+   +++  R R   T    +  ++  S G  +   + F
Sbjct: 94  KALQFFN-WAQEMGYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRSRGIVKLEARFF 152

Query: 142 AIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG 201
             +   +  AG    ++K+F  M  HG   S+ +FN++L +L K  +   A  ++     
Sbjct: 153 NSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLS 212

Query: 202 KFKA--DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
            +    D  ++N++  G+C+    +    +  ++   G  P++ TYN ++ G  RAG++ 
Sbjct: 213 TYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKVT 272

Query: 260 EAWRFFLEMKKRKCEI--DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
            A+     M K+  ++  +VVTYTT++ G+    EI++A  VF+ MVN G+  +  TYN 
Sbjct: 273 VAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITYNT 332

Query: 318 MIQVLCKKDSVENAILVFEEMVGKG-YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
           +I+ LC+    E    + E   G G + P++ T+N ++   CH G ++ AL+   RM + 
Sbjct: 333 LIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSEL 392

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKM--------GSGVCLPNLDTYNILISSM- 427
           + +P+  TY+ L+R  C  G  E+  +L +K+        G G C P +  YN +   + 
Sbjct: 393 KIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDG-CKPLVAAYNPIFKYLC 451

Query: 428 --------------FVRKKSDD-----LLVAG-----------KLLIEMVDRGFMPRKFT 457
                          +R+ + D      L+ G           +LL+ M+ + F+P   T
Sbjct: 452 ETGKTKKAEKAFRQLMRRGTQDPPSYKTLIMGHCKEGTFESGYELLVLMLRKDFLPDFET 511

Query: 458 FNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           +  ++NGLL +    LA + L    R    P
Sbjct: 512 YESLINGLLHMDKPLLALQSLEKMLRSSHRP 542



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/366 (29%), Positives = 173/366 (47%), Gaps = 21/366 (5%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           + +  + P   TF I+   +   G  D   +IF  +   GC   + ++NT++D LC+  K
Sbjct: 211 LSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGK 270

Query: 189 VEKAYNLFKVFRGKFKAD----VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
           V  AYN+ K   GK   D    V++Y  +  G+C  +   KAL V +EMV++GL  N  T
Sbjct: 271 VTVAYNVVKGM-GKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNIT 329

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI--DVVTYTTIVHGFGVVGEIKRARNVFDG 302
           YN ++KG   A + E+  +  LE          D  T+ T++H     G +  A  VF+ 
Sbjct: 330 YNTLIKGLCEARKFEK-IKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFER 388

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV-------GKGYMPNSTTYNVVIR 355
           M    + P  ATY+A+++ LC+    E A  + ++++       G G  P    YN + +
Sbjct: 389 MSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLVAAYNPIFK 448

Query: 356 GLCHTGEMERALE-FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
            LC TG+ ++A + F   M+    +P   +Y  LI   C  G  E G EL   M     L
Sbjct: 449 YLCETGKTKKAEKAFRQLMRRGTQDP--PSYKTLIMGHCKEGTFESGYELLVLMLRKDFL 506

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           P+ +TY  LI+ +      D  L+A + L +M+     P   TF+ +L  LL  G    +
Sbjct: 507 PDFETYESLINGLL---HMDKPLLALQSLEKMLRSSHRPNSSTFHSILAKLLEQGRTSES 563

Query: 475 KEILRL 480
             +++L
Sbjct: 564 ASLIQL 569



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/345 (20%), Positives = 138/345 (40%), Gaps = 45/345 (13%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRM--KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFL 162
           +++  +D   R       + +V  M  KS+ L P   T+  +   Y +  + ++A+ +F 
Sbjct: 257 TYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFE 316

Query: 163 SMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLV 220
            M   G + +  ++NT++  LC+ +K EK  ++ +     G F  D  ++N + +  C  
Sbjct: 317 EMVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHA 376

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK-------C 273
              + AL+V + M +  + P+  TY+ +++   + G  E+A     ++ +RK       C
Sbjct: 377 GNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGC 436

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV------------------------- 308
           +  V  Y  I       G+ K+A   F  ++  G                          
Sbjct: 437 KPLVAAYNPIFKYLCETGKTKKAEKAFRQLMRRGTQDPPSYKTLIMGHCKEGTFESGYEL 496

Query: 309 ---------LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
                    LP   TY ++I  L   D    A+   E+M+   + PNS+T++ ++  L  
Sbjct: 497 LVLMLRKDFLPDFETYESLINGLLHMDKPLLALQSLEKMLRSSHRPNSSTFHSILAKLLE 556

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
            G    +   +  M D     N+      +R    AG  ++  +L
Sbjct: 557 QGRTSESASLIQLMLDKNIRQNLSFSTGCVRLLFGAGMNDKAFQL 601


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/364 (28%), Positives = 173/364 (47%), Gaps = 5/364 (1%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           S  S+   I+     +D      L+ +M    L P    ++I+   Y S G+ + A ++ 
Sbjct: 437 SAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLL 496

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLV 220
             M   G    +  +N I+  L K  K+E+A       +G+  K D +++     G+   
Sbjct: 497 DGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKT 556

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
            +  +A +   EM+D GL PN   Y +++ G+F+AG + EA   F  +       DV T 
Sbjct: 557 GKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTC 616

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
           +  +HG    G ++ A  VF  +   G++P V TY+++I   CK+  VE A  + +EM  
Sbjct: 617 SAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCL 676

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           KG  PN   YN ++ GLC +G+++RA +    M +   EP+  TY+ +I  +C +  +  
Sbjct: 677 KGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAE 736

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
              LF +M S    P+   YN L+       K  D+  A  L  EM+ +GF     +FN 
Sbjct: 737 AFSLFHEMPSKGVQPHSFVYNALVHGCC---KEGDMEKAMNLFREMLQKGF-ATTLSFNT 792

Query: 461 VLNG 464
           +++G
Sbjct: 793 LIDG 796



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 170/330 (51%)

Query: 106  FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
            ++  +D   +  D +    L   M    L P   T++ + + Y  +     A  +F  M 
Sbjct: 686  YNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMP 745

Query: 166  EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNK 225
              G +     +N ++   CKE  +EKA NLF+    K  A  +S+N + +G+C   +  +
Sbjct: 746  SKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQE 805

Query: 226  ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
            A ++ +EM+ + + P+  TY  V+  + +AG++EEA   F EM++R   +D VTYT++++
Sbjct: 806  ASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMY 865

Query: 286  GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
            G+  +G+      +F+ MV  GV P   TY  +I   CK+D++  A  + +E+VGKG + 
Sbjct: 866  GYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLT 925

Query: 346  NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
              T ++++I  LC   ++  A + +  M +   +P++   N L+R F +AG+++    +F
Sbjct: 926  KGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVF 985

Query: 406  EKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
            E + S   +P+  T   L++       S+D
Sbjct: 986  EGVKSLGLVPDTTTLIDLVNGNLNDTDSED 1015



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 163/343 (47%), Gaps = 4/343 (1%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           W + + M    +G    T+  +       G    A ++ + M E G   +   ++ +++ 
Sbjct: 213 WKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEG 272

Query: 183 LCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           +C+   +++A  L +    K    +  +Y +I  G C  KR N+A    +EM   GL P+
Sbjct: 273 MCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPD 332

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
               + ++ G+ R G I+E  R    M      I+++TY  ++HG    G++++A  +  
Sbjct: 333 YNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILK 392

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
           GMV  G  P+  T+  +I+  C++ ++  A+ + +EM  +  +P++ +Y  +I GLCH  
Sbjct: 393 GMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCK 452

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
           ++  A + + +M     +PNV  Y+ILI  +   G IE    L + M      P++  YN
Sbjct: 453 DLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYN 512

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
            +IS +    K+  +  A   L+E+  RG  P   TF   + G
Sbjct: 513 AIISCL---SKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILG 552



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/402 (25%), Positives = 176/402 (43%), Gaps = 41/402 (10%)

Query: 102 SPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           +P+ F ++  I+   ++ D      L   M    L P   T+ II      A + + A  
Sbjct: 260 NPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKL 319

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWC 218
            F  M + G +   N+ + ++D   +E  +++   +  V        ++I+YNV+ +G C
Sbjct: 320 TFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLC 379

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK------ 272
              +  KA E+LK MV  G  PN  T+ ++++GY R   +  A     EM+KR       
Sbjct: 380 KFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAV 439

Query: 273 ---------CEI--------------------DVVTYTTIVHGFGVVGEIKRARNVFDGM 303
                    C                      +VV Y+ ++  +   G I+ AR + DGM
Sbjct: 440 SYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGM 499

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              GV P +  YNA+I  L K   +E A     E+ G+G  P++ T+   I G   TG+M
Sbjct: 500 SCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKM 559

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             A ++   M D    PN   Y +LI     AG +   L +F ++ +   LP++ T +  
Sbjct: 560 TEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAF 619

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           I  +    +  + L   K+  E+ ++G +P  FT++ +++G 
Sbjct: 620 IHGLLKNGRVQEAL---KVFSELKEKGLVPDVFTYSSLISGF 658



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 98/398 (24%), Positives = 174/398 (43%), Gaps = 34/398 (8%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           ++  R+ +L + P  +T +      +  G+   A+K+F  + E G    + ++++++   
Sbjct: 599 SIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGF 658

Query: 184 CKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CK+ +VEKA+ L      K  A ++  YN + +G C      +A ++   M ++GL P+ 
Sbjct: 659 CKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDS 718

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TY+ ++ GY ++  + EA+  F EM  +  +     Y  +VHG    G++++A N+F  
Sbjct: 719 VTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFRE 778

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M+  G   +  ++N +I   CK   ++ A  +F+EM+ K  MP+  TY  VI   C  G+
Sbjct: 779 MLQKG-FATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGK 837

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           ME A      M++     +  TY  L+  +   G+      LFEKM +    P+  TY +
Sbjct: 838 MEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGL 897

Query: 423 LI---------------------SSMFVRK-----------KSDDLLVAGKLLIEMVDRG 450
           +I                       M  +            K +DL  A KLL EM + G
Sbjct: 898 VIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELG 957

Query: 451 FMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             P     N ++      G    A  +       G +P
Sbjct: 958 LKPSLAACNTLVRSFHEAGKMDEATRVFEGVKSLGLVP 995



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 141/325 (43%), Gaps = 38/325 (11%)

Query: 199 FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
           FR    +  + ++++ + +  +   ++A  V     +  +  +L   N +LK   + G +
Sbjct: 150 FRNYGGSSPVVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLLKDLLKCGMM 209

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           E  W+ +  M   K   DV TYT +V      G+++ A+ V   M   G+ P+   Y+ +
Sbjct: 210 ELFWKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLV 269

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           I+ +C+   ++ A+ +   M  KG +PN+ TY ++  GLC    M  A      M+    
Sbjct: 270 IEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGL 329

Query: 379 EP-----------------------------------NVQTYNILIRYFCDAGEIERGLE 403
           +P                                   N+ TYN+LI   C  G++E+  E
Sbjct: 330 KPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAE 389

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           + + M +  C PN  T+ +LI   + R+   ++  A +LL EM  R  +P   ++  ++N
Sbjct: 390 ILKGMVTLGCKPNSRTFCLLIEG-YCREH--NMGRALELLDEMEKRNLVPSAVSYGAMIN 446

Query: 464 GLLLIGNQGLAKEILRLQSRCGRLP 488
           GL    +  LA ++L   +  G  P
Sbjct: 447 GLCHCKDLSLANKLLEKMTFSGLKP 471



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 134/315 (42%), Gaps = 39/315 (12%)

Query: 97   PTYAHSPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKA 154
            P     P S  ++  ID   +  +    ++L H M S  + P    +  +       G  
Sbjct: 710  PEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDM 769

Query: 155  DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVI 213
            ++A+ +F  M + G   +L SFNT++D  CK  K+++A  LF+    K    D ++Y  +
Sbjct: 770  EKAMNLFREMLQKGFATTL-SFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTV 828

Query: 214  ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
             +  C   +  +A  + KEM +R L  +  TY  ++ GY + GQ  E +  F +M  +  
Sbjct: 829  IDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGV 888

Query: 274  EIDVVTYTTIVHGF--------------GVVG---------------------EIKRARN 298
            + D VTY  +++                 VVG                     ++  A  
Sbjct: 889  KPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASK 948

Query: 299  VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
            + D M   G+ PS+A  N +++   +   ++ A  VFE +   G +P++TT   ++ G  
Sbjct: 949  LLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNL 1008

Query: 359  HTGEMERALEFVGRM 373
            +  + E A   + ++
Sbjct: 1009 NDTDSEDARNLIKQL 1023


>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
 gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
          Length = 670

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/398 (29%), Positives = 187/398 (46%), Gaps = 41/398 (10%)

Query: 98  TYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRA 157
           +Y    S+F   I+  A L D++++  ++ RMK       +K F +I + Y  A   ++A
Sbjct: 85  SYRLGDSTFYSLINNYANLGDFKSLEKVLDRMKCEKRVIFEKCFIVIFKAYGKAHLPEKA 144

Query: 158 VKIFLSMH-EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG 216
           V +F  M  E  C+++  SFN++L+++ +E    +A   +    G            A G
Sbjct: 145 VDLFDRMACEFECKRTGKSFNSVLNVIIQEGLFHRALEFYNHVIG------------AKG 192

Query: 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID 276
                                ++PN+ T+N+V+K   + G +++A + F +M  RKCE D
Sbjct: 193 V-------------------SISPNVLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPD 233

Query: 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE 336
           V TY T++ G      I  A ++ D M   G  PS  T+N +I  LCKK  +  A  + +
Sbjct: 234 VYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVD 293

Query: 337 EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
            M  KG +PN  TYN +I GLC  G++E+A+  + RM   +C PNV TY  +I      G
Sbjct: 294 NMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQG 353

Query: 397 EIERG---LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
               G   L L E+ G  V   N   Y+ LIS +F   KS +   A  L  EM  +G+  
Sbjct: 354 RALDGACVLALMEERGYCV---NEYVYSTLISGLFKEGKSQE---AMHLFKEMTVKGYEL 407

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
               ++ V++GL   G    A E+L   +  G  P  +
Sbjct: 408 NTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNAY 445



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 172/342 (50%), Gaps = 6/342 (1%)

Query: 130 KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV 189
           K +S+ P   TF ++ +     G  D A+++F  M    C   + ++ T++D LCK  ++
Sbjct: 191 KGVSISPNVLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRI 250

Query: 190 EKAYNLFKVFR--GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           ++A +L    +  G F + V ++NV+ NG C     ++A +++  M  +G  PN  TYN 
Sbjct: 251 DEAVSLLDEMQIDGCFPSPV-TFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNT 309

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ G    G++E+A      M   KC  +VVTY TI++G    G       V   M   G
Sbjct: 310 LIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEERG 369

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
              +   Y+ +I  L K+   + A+ +F+EM  KGY  N+  Y+ VI GLC  G+ + A+
Sbjct: 370 YCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAV 429

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           E +  M +  C PN  T + L++ F +AG   R +E+++ M       N   Y++LI  +
Sbjct: 430 EVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLIHGL 489

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
               K  + ++   +  +M+ +G  P    ++ ++NGL + G
Sbjct: 490 CKDGKVKEAMM---VWTQMLGKGCKPDVVAYSSMINGLSIAG 528



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 168/340 (49%), Gaps = 12/340 (3%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           +L+  M+     P+  TF ++       G   RA K+  +M   GC  +  ++NT++  L
Sbjct: 255 SLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGL 314

Query: 184 CKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           C + K+EKA +L  ++   K   +V++Y  I NG     R      VL  M +RG   N 
Sbjct: 315 CLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEERGYCVNE 374

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
             Y+ ++ G F+ G+ +EA   F EM  +  E++ + Y+ ++ G    G+   A  V   
Sbjct: 375 YVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVEVLSE 434

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M N G  P+  T +++++   +  +   A+ V+++M    +  N   Y+V+I GLC  G+
Sbjct: 435 MTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLIHGLCKDGK 494

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC-----LPNL 417
           ++ A+    +M    C+P+V  Y+ +I     AG +E  ++L+ +M   +C      P++
Sbjct: 495 VKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEM---LCQGPDSQPDV 551

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
            TYNIL++++    K   +  A  LL  M+DRG  P   T
Sbjct: 552 VTYNILLNTLC---KQSSISRAIDLLNSMLDRGCDPDLVT 588



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/361 (27%), Positives = 171/361 (47%), Gaps = 23/361 (6%)

Query: 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH 167
           H + L  +L       +L+ RM S    P   T+  I    V  G+A     +   M E 
Sbjct: 312 HGLCLKGKLE---KAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEER 368

Query: 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKA 226
           G   +   ++T++  L KE K ++A +LFK    K ++ + I Y+ + +G C   + + A
Sbjct: 369 GYCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDA 428

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
           +EVL EM ++G  PN  T + ++KG+F AG    A   + +M K     + V Y+ ++HG
Sbjct: 429 VEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLIHG 488

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG--YM 344
               G++K A  V+  M+  G  P V  Y++MI  L     VE+A+ ++ EM+ +G    
Sbjct: 489 LCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQGPDSQ 548

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           P+  TYN+++  LC    + RA++ +  M D  C+P++ T  I +R             L
Sbjct: 549 PDVVTYNILLNTLCKQSSISRAIDLLNSMLDRGCDPDLVTCTIFLRM------------L 596

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
            EK+      P  D    L   +    K   +L A K++  M+ +   P+  T+ RV+  
Sbjct: 597 REKLD-----PPQDGREFLDELVVRLLKRQRVLGASKIVEVMLQKLLPPKHSTWARVVEN 651

Query: 465 L 465
           L
Sbjct: 652 L 652



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 179/386 (46%), Gaps = 8/386 (2%)

Query: 85  KALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           +AL F+N +      + SP+  +F+  I    ++        +   M      P   T+ 
Sbjct: 179 RALEFYNHVIGAKGVSISPNVLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYC 238

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRG 201
            + +    A + D AV +   M   GC  S  +FN +++ LCK+  + +A  L   +F  
Sbjct: 239 TLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLK 298

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
               + ++YN + +G CL  +  KA+ +L  MV     PN+ TY  ++ G  + G+  + 
Sbjct: 299 GCIPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDG 358

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
                 M++R   ++   Y+T++ G    G+ + A ++F  M   G   +   Y+A+I  
Sbjct: 359 ACVLALMEERGYCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDG 418

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           LC+    ++A+ V  EM  KG  PN+ T + +++G    G   RA+E    M       N
Sbjct: 419 LCRDGKPDDAVEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQN 478

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
              Y++LI   C  G+++  + ++ +M    C P++  Y+ +I+ + +    +D   A +
Sbjct: 479 EVCYSVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVED---AMQ 535

Query: 442 LLIEMVDRG--FMPRKFTFNRVLNGL 465
           L  EM+ +G    P   T+N +LN L
Sbjct: 536 LYNEMLCQGPDSQPDVVTYNILLNTL 561


>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
 gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 670

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 190/382 (49%), Gaps = 8/382 (2%)

Query: 98  TYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRA 157
           +Y    ++F   I+  A  R++  +  ++ RMK      T+  F +I +    A     A
Sbjct: 84  SYKLGDATFYRLIENYATSREFHFIHQVLDRMKREGRVLTETIFILIFKACGKAHLPGEA 143

Query: 158 VKIFLSM-HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGK---FKADVISYNV 212
           V  F  M ++  C+Q++ SFN++L+++ +E     A+  +  VF      F+ ++++YN+
Sbjct: 144 VNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNL 203

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           I    C + + ++A++  +EM  +  NP++ TY+ ++ G  +  +++EA     EM+   
Sbjct: 204 IIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEG 263

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
           C  + VT+  ++      G++ RA  + D M   G +P+  TYN +I  LC K  ++ A+
Sbjct: 264 CLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAL 323

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
            + E+MV    +PN  TY  +I GL      E  +  +  M++   + N   Y+ LI   
Sbjct: 324 SLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGL 383

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
              G+ E  + L+++M    C PN+  Y   I  +   +K D+   A  +L EM+ +GF+
Sbjct: 384 FKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDE---AEDILQEMLSKGFL 440

Query: 453 PRKFTFNRVLNGLLLIGNQGLA 474
           P  FT++ ++ G    G+   A
Sbjct: 441 PNAFTYSSLMKGFFKKGDSQKA 462



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 177/344 (51%), Gaps = 6/344 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M++    P   TF ++ +     G   RA K+  +M   GC  +  ++NT++  LC
Sbjct: 255 LLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLC 314

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            + K++KA +L  K+   K   + ++Y  I NG    +R    + +L  M +RG   N  
Sbjct: 315 LKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEY 374

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            Y+ ++ G F+ G+ E A R + EM ++ C+ +VV Y   + G     +   A ++   M
Sbjct: 375 IYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEM 434

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           ++ G LP+  TY+++++   KK   + AILV++EM+ +    N    +V++ GLC +G +
Sbjct: 435 LSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRL 494

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM--GSGVCLPNLDTYN 421
             AL     M  +  +P+V  Y+ +I+  CD G +++GL+LF +M        P++ TYN
Sbjct: 495 REALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYN 554

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           IL +++    + D+L  A  LL  M+D G  P   T N  L  L
Sbjct: 555 ILFNALC---RQDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETL 595



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 167/348 (47%), Gaps = 8/348 (2%)

Query: 127 HRM-KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM---HEHGCRQSLNSFNTILDL 182
           HRM   L    T K+F  +    +  G    A K +L +   +  G + +L ++N I+  
Sbjct: 148 HRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKA 207

Query: 183 LCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           LCK  ++++A + F+    K    DV +Y+ + NG C  +R ++A+ +L EM   G  PN
Sbjct: 208 LCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPN 267

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
             T+N+++    + G +  A +    M  + C  + VTY T++HG  + G++ +A ++ +
Sbjct: 268 PVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLE 327

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            MV+   +P+  TY  +I  L K+   E+ + +   M  +G   N   Y+ +I GL   G
Sbjct: 328 KMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEG 387

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
           + E A+     M +  C+PNV  Y   I   C   + +   ++ ++M S   LPN  TY+
Sbjct: 388 KSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYS 447

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
            L+   F +  S   ++  K   EM+ +         + +LNGL   G
Sbjct: 448 SLMKGFFKKGDSQKAILVWK---EMMSQDMRHNVVCCSVLLNGLCESG 492


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/388 (27%), Positives = 172/388 (44%), Gaps = 35/388 (9%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           PT  ++  +     S  K D A K F SM ++GC   + +F T++   CK  + +  + L
Sbjct: 5   PTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKL 64

Query: 196 F----KVFR---------------------GKFKA-------DVISYNVIANGWCLVKRT 223
                K FR                     G F+A       DVISY  +  G    KR 
Sbjct: 65  LNQALKRFRPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASLDVISYTTVIKGLADSKRI 124

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           ++A E+ +E+   G +PN+  Y  V+ G  +AG+IE+  + F EM    C     TYT +
Sbjct: 125 DEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVV 184

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G      +  A  VF+ MV  G +P   TY  +I    K   ++ A  + + M+ KG 
Sbjct: 185 IDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGP 244

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P + TY  ++ G C    +  A E + +M++  CEP +  +  L+ Y+   G  E   +
Sbjct: 245 EPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQ 304

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           +  +M +  C P++  Y  LI  +F   +  +   A  +   M+++G  P   T+  ++ 
Sbjct: 305 VLTEMTARGCAPDVILYTSLIDLLFSTGRVPE---ARHVFDSMIEKGCAPDALTYGTIIQ 361

Query: 464 GLLLIGNQGLAKEILRLQSRCGRLPRQF 491
               IGN   A EIL L ++ G  P  F
Sbjct: 362 NFSKIGNVEAAGEILELMAKSGVGPDCF 389



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 171/364 (46%), Gaps = 5/364 (1%)

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186
             M   S  PT+ T+ ++ +    A     A K+F  M + GC     ++ T++D   K 
Sbjct: 167 EEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKA 226

Query: 187 KKVEKAYNLFKVFRGKF-KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
            K+++A  L  V   K  +   ++Y  I +G+C +   N+A EV+ +M +RG  P L  +
Sbjct: 227 SKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIF 286

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
             +L  Y   G+ EEA++   EM  R C  DV+ YT+++      G +  AR+VFD M+ 
Sbjct: 287 TSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIE 346

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G  P   TY  +IQ   K  +VE A  + E M   G  P+   YN ++ G      +++
Sbjct: 347 KGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQ 406

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILI 424
           A     RM     +PN  T+N+L+      G+ +R   LF++M       P L +Y ILI
Sbjct: 407 AFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILI 466

Query: 425 SSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484
             +    K+  +  A     EM+DRG +P   T+  ++  L   G    AK+++    + 
Sbjct: 467 DGL---GKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKL 523

Query: 485 GRLP 488
           G  P
Sbjct: 524 GVNP 527



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 138/284 (48%), Gaps = 5/284 (1%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           + ++  M +    P    +  + +   S G+   A  +F SM E GC     ++ TI+  
Sbjct: 303 YQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQN 362

Query: 183 LCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
             K   VE A  + ++  +     D  +YN + +G+  ++R ++A  V   MV  G+ PN
Sbjct: 363 FSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPN 422

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEM-KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
             T+N+++ G F+ G+ + A+  F EM +K +    +V+YT ++ G G  G +  A   F
Sbjct: 423 AVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQF 482

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
             M++ G++P   TY ++I  L K   +  A  + E+MV  G  P+   Y+ +I GL  +
Sbjct: 483 QEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDS 542

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
             ++ A +    M    C PN  TY +L R F  AG   R L+L
Sbjct: 543 SMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAG---RALDL 583



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 146/301 (48%), Gaps = 2/301 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++ +M+     P    F  +   Y+S G+A+ A ++   M   GC   +  + +++DLL 
Sbjct: 270 VIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLF 329

Query: 185 KEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
              +V +A ++F     K  A D ++Y  I   +  +     A E+L+ M   G+ P+  
Sbjct: 330 STGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCF 389

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            YN ++ GY +  ++++A+  +  M     + + VT+  ++HG    G+  RA ++F  M
Sbjct: 390 AYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEM 449

Query: 304 VNGG-VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           +    V P++ +Y  +I  L K   V  A L F+EM+ +G +P   TY  +I  L   G 
Sbjct: 450 LEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGR 509

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           +  A + V  M      P+VQ Y+ LI    D+  ++   ++F++M    C PN  TY +
Sbjct: 510 IPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKV 569

Query: 423 L 423
           L
Sbjct: 570 L 570



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 124/286 (43%), Gaps = 34/286 (11%)

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE---- 292
           G  P + +YN V+ G     +++EA++FF  M    CE DV+ +TT++HGF   G+    
Sbjct: 2   GCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVG 61

Query: 293 -------IKRAR-------NVFDGMVNGGVLPS-------------VATYNAMIQVLCKK 325
                  +KR R       +V  G    G L +             V +Y  +I+ L   
Sbjct: 62  HKLLNQALKRFRPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASLDVISYTTVIKGLADS 121

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
             ++ A  +FEE+   G  PN   Y  VI GL   G +E  L+    M    C P   TY
Sbjct: 122 KRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTY 181

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
            ++I   C A  +    ++FE+M    C+P+  TY  LI       K D+   A KLL  
Sbjct: 182 TVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDE---ARKLLDV 238

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           M+ +G  P   T+  +++G   +     AKE++      G  P  F
Sbjct: 239 MLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLF 284



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 90/190 (47%), Gaps = 4/190 (2%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  +D   +L      + +  RM +  + P   TF ++       GK DRA  +F  M
Sbjct: 390 AYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEM 449

Query: 165 HE-HGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVK 221
            E      +L S+  ++D L K  +V +A+  F+  + RG    +  +Y  +        
Sbjct: 450 LEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRG-IIPECHTYTSLIYSLAKAG 508

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
           R  +A +++++MV  G+NP++  Y+ ++ G   +  ++ AW  F EM KR C  + VTY 
Sbjct: 509 RIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYK 568

Query: 282 TIVHGFGVVG 291
            +  GF   G
Sbjct: 569 VLRRGFRAAG 578


>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 641

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 175/357 (49%), Gaps = 7/357 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+ ++ S    P   ++  + +    A + D   ++ + M   GC  ++ +FNT++  LC
Sbjct: 200 LLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLC 259

Query: 185 KEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           +    E+ +  L ++       D+  Y  I +G C       A ++L  M   GL PN+ 
Sbjct: 260 RNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVV 319

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            YN VLKG   A + EEA     EM +  C +D VT+  +V  F   G + R   + + M
Sbjct: 320 CYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQM 379

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           +  G +P V TY  +I   CK+  V+ A+++ + M   G  PN+ +Y +V++GLC     
Sbjct: 380 LEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERW 439

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             A E +  M    C PN  T+N LI + C  G +E+ +EL ++M    C P+L +Y+ +
Sbjct: 440 VDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCSPDLISYSTV 499

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           I  +    K+++ L   +LL  M+++G  P    ++ + + L     +G   +I+++
Sbjct: 500 IDGLGKAGKTEEAL---ELLNVMINKGITPNTIIYSSMASAL---SREGRTDKIIQM 550



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 98/385 (25%), Positives = 188/385 (48%), Gaps = 8/385 (2%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           ++F+  I    R   +  V   + +M      P  + +A I +     G  + A  I   
Sbjct: 249 ATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSR 308

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKR 222
           M  +G + ++  +NT+L  LC  ++ E+A +L  ++F+     D +++N++ + +C    
Sbjct: 309 MPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGL 368

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
            ++ +E+L++M++ G  P++ TY  V+ G+ + G ++EA      M    C+ + ++YT 
Sbjct: 369 VDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTI 428

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++ G         A+ +   M+  G LP+  T+N +I  +CKK  VE AI + ++M+  G
Sbjct: 429 VLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNG 488

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
             P+  +Y+ VI GL   G+ E ALE +  M +    PN   Y+ +       G  ++ +
Sbjct: 489 CSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKII 548

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           ++F+ +       +   YN +ISS+  R ++D  +        MV  G MP + T+  ++
Sbjct: 549 QMFDSIQDATVRSDAALYNAVISSLCKRWETDRAI---DFFAYMVSNGCMPNESTYTILI 605

Query: 463 NGLLLIGNQGLAKEILRLQSR-CGR 486
            GL    ++GL +E   L S  C R
Sbjct: 606 RGL---ASEGLVREAQDLLSELCSR 627



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 171/358 (47%), Gaps = 7/358 (1%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           T++  M       T     +I E     G    AV+    +H  GC     + N ++  +
Sbjct: 129 TVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRALQVLHAKGCTLDSGNCNLVVSAI 188

Query: 184 CKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           C++  V++   L +       + D++SYN +  G C+ KR +   E++ EMV  G  PN+
Sbjct: 189 CEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGCPPNV 248

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            T+N ++    R G  E+      +M +  C  D+  Y TI+ G    G  + A ++   
Sbjct: 249 ATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSR 308

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M + G+ P+V  YN +++ LC  +  E A  +  EM  +    +  T+N+++   C  G 
Sbjct: 309 MPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGL 368

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           ++R +E + +M +  C P+V TY  +I  FC  G ++  + L + M +  C PN  +Y I
Sbjct: 369 VDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTI 428

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           ++  +   ++  D   A +L+  M+ +G +P   TFN ++N    +  +GL ++ + L
Sbjct: 429 VLKGLCRAERWVD---AQELISHMIQQGCLPNPVTFNTLIN---FMCKKGLVEQAIEL 480



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 156/354 (44%), Gaps = 4/354 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+  I     + G    A+ +   M   GC  +    + IL+  C+      A   
Sbjct: 106 PNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRA 165

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            +V   K    D  + N++ +  C     ++ +E+L+++   G  P++ +YN VLKG   
Sbjct: 166 LQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCM 225

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
           A + ++     +EM +  C  +V T+ T++      G  ++       M   G  P +  
Sbjct: 226 AKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRM 285

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y  +I  +CK    E A  +   M   G  PN   YN V++GLC     E A + +  M 
Sbjct: 286 YATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMF 345

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
            ++C  +  T+NIL+ +FC  G ++R +EL E+M    C+P++ TY  +I+        D
Sbjct: 346 QEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVD 405

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           + ++   LL  M   G  P   ++  VL GL        A+E++    + G LP
Sbjct: 406 EAVM---LLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLP 456



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 114/261 (43%), Gaps = 9/261 (3%)

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           C   RT  A   L    D      +  YN ++ GY RAGQ+  A R    +       + 
Sbjct: 55  CAAGRTADAARALDTAGDAA---GVVAYNAMIAGYCRAGQVAAARRLAAAVPVPP---NA 108

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
            TY  IV      G I  A  V D M   G   +    + +++  C+     +A+   + 
Sbjct: 109 YTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRALQV 168

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           +  KG   +S   N+V+  +C  G ++  +E + ++    CEP++ +YN +++  C A  
Sbjct: 169 LHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKR 228

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
            +   EL  +M    C PN+ T+N LI+ +      + +  A   L +M + G  P    
Sbjct: 229 WDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEA---LSQMPEHGCTPDLRM 285

Query: 458 FNRVLNGLLLIGNQGLAKEIL 478
           +  +++G+   G+  +A +IL
Sbjct: 286 YATIIDGICKDGHHEVANDIL 306



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 85/226 (37%), Gaps = 43/226 (19%)

Query: 103 PSSFDHAIDLAARLRDYRTV--WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P++  + I L    R  R V    L+  M      P   TF  +       G  ++A+++
Sbjct: 421 PNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIEL 480

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK------------------ 202
              M  +GC   L S++T++D L K  K E+A  L  V   K                  
Sbjct: 481 LKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSR 540

Query: 203 ------------------FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
                              ++D   YN + +  C    T++A++    MV  G  PN +T
Sbjct: 541 EGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNEST 600

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
           Y I+++G    G + EA     E+  R+          +V  FG+V
Sbjct: 601 YTILIRGLASEGLVREAQDLLSELCSRR-----AVRKHLVRHFGIV 641


>gi|356529499|ref|XP_003533328.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 447

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/389 (27%), Positives = 195/389 (50%), Gaps = 14/389 (3%)

Query: 101 HSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           H+P    F+  +D  A+++ Y TV +L HR++   + P   T  I+   +   G+     
Sbjct: 55  HTPPIIQFNKILDSFAKMKHYSTV-SLSHRLELKGIQPDLFTLNILINCFCHMGQITFGF 113

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGW 217
            +   + + G   S  + NT++  LC + +V+KA +   K+    F+ + + Y  + NG 
Sbjct: 114 SVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVGYGTLINGV 173

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           C +  T  A+++LK++  R   P++  Y+ ++    +   + EA+  F EM  +    DV
Sbjct: 174 CKIGDTRAAIKLLKKIDGRLTKPDVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADV 233

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL---- 333
           VTY T+++GF +VG++K A  + + MV   + P V TY  ++  LCK+  V+ A      
Sbjct: 234 VTYNTLIYGFCIVGKLKEAIGLLNVMVLKTINPDVYTYTILVDALCKEGKVKEAKRRISY 293

Query: 334 ---VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
              + +EM  +G   +  TY+ +I GLC  G ++RA+    +MKD    PN+ T+ IL+ 
Sbjct: 294 VWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNMFTFTILLD 353

Query: 391 YFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450
                G ++   E+F+ + +     N+ TYN++I+      K   L  A  +L +M D G
Sbjct: 354 GLWKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMING---HCKQGLLEEALTMLSKMEDNG 410

Query: 451 FMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
            +P  FTF  ++  L        A+++LR
Sbjct: 411 CIPNAFTFETIIIALFKKDENDKAEKLLR 439



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 146/265 (55%), Gaps = 8/265 (3%)

Query: 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISY 210
           G    A+K+   +     +  +  ++TI+D LCK + V +AY LF     K   ADV++Y
Sbjct: 177 GDTRAAIKLLKKIDGRLTKPDVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTY 236

Query: 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA-------WR 263
           N +  G+C+V +  +A+ +L  MV + +NP++ TY I++    + G+++EA       W 
Sbjct: 237 NTLIYGFCIVGKLKEAIGLLNVMVLKTINPDVYTYTILVDALCKEGKVKEAKRRISYVWD 296

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
              EM+ R    DV+TY++++ G    G + RA  +F+ M + G+ P++ T+  ++  L 
Sbjct: 297 LIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNMFTFTILLDGLW 356

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
           K   +++A  VF++++ KGY  N  TYNV+I G C  G +E AL  + +M+D+ C PN  
Sbjct: 357 KGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAF 416

Query: 384 TYNILIRYFCDAGEIERGLELFEKM 408
           T+  +I       E ++  +L  +M
Sbjct: 417 TFETIIIALFKKDENDKAEKLLRQM 441



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 133/317 (41%), Gaps = 31/317 (9%)

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
            FN ILD   K K         ++     + D+ + N++ N +C + +      VL +++
Sbjct: 61  QFNKILDSFAKMKHYSTVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKIL 120

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
            RG  P+  T N ++KG    GQ+++A  F  ++  +  +++ V Y T+++G   +G+ +
Sbjct: 121 KRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVGYGTLINGVCKIGDTR 180

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
            A  +   +      P V  Y+ +I  LCK   V  A  +F EM  KG   +  TYN +I
Sbjct: 181 AAIKLLKKIDGRLTKPDVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYNTLI 240

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
            G C  G+++ A+  +  M      P+V TY IL+   C  G+                 
Sbjct: 241 YGFCIVGKLKEAIGLLNVMVLKTINPDVYTYTILVDALCKEGK----------------- 283

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
                         V++    +     L+ EM DRG      T++ +++GL   G+   A
Sbjct: 284 --------------VKEAKRRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRA 329

Query: 475 KEILRLQSRCGRLPRQF 491
             +       G  P  F
Sbjct: 330 IALFNKMKDQGIRPNMF 346



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 119/243 (48%), Gaps = 8/243 (3%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID   + +     + L   M    +     T+  +   +   GK   A+ +   M     
Sbjct: 205 IDALCKYQLVSEAYGLFSEMTVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNVMVLKTI 264

Query: 170 RQSLNSFNTILDLLCKEKKVEKA-------YNLFKVFRGKFK-ADVISYNVIANGWCLVK 221
              + ++  ++D LCKE KV++A       ++L    R + + ADVI+Y+ + +G C   
Sbjct: 265 NPDVYTYTILVDALCKEGKVKEAKRRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNG 324

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
             ++A+ +  +M D+G+ PN+ T+ I+L G ++ G++++A   F ++  +   ++V TY 
Sbjct: 325 HLDRAIALFNKMKDQGIRPNMFTFTILLDGLWKGGRLKDAQEVFQDLLTKGYHLNVYTYN 384

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
            +++G    G ++ A  +   M + G +P+  T+  +I  L KKD  + A  +  +M+ +
Sbjct: 385 VMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIAR 444

Query: 342 GYM 344
           G +
Sbjct: 445 GLL 447


>gi|15233088|ref|NP_191695.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75264589|sp|Q9M2C8.1|PP291_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g61360
 gi|6850903|emb|CAB71066.1| putative protein [Arabidopsis thaliana]
 gi|25054868|gb|AAN71923.1| unknown protein [Arabidopsis thaliana]
 gi|332646669|gb|AEE80190.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 498

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 111/403 (27%), Positives = 198/403 (49%), Gaps = 21/403 (5%)

Query: 61  HCPSLHWTPQLVDQIIKRLW---NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLR 117
           H P    +P+ V +++ RL+   ++ LKAL FF         + +  SF+  + + AR+R
Sbjct: 58  HIPLSSLSPEFVSEVLGRLFAAHSNGLKALEFFKYSLKSSKSSPTSDSFEKTLHILARMR 117

Query: 118 DYRTVWTLVHRMKS-----LSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ- 171
            +   W L+  ++      LS     K+ +I+  +    G  +  ++ F+ M +   R+ 
Sbjct: 118 YFDQAWALMAEVRKDYPNLLSF----KSMSILLCKIAKFGSYEETLEAFVKMEKEIFRKK 173

Query: 172 -SLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVL 230
             ++ FN +L   C E+++++A ++F+    +F  DV + N++  G+             
Sbjct: 174 FGVDEFNILLRAFCTEREMKEARSIFEKLHSRFNPDVKTMNILLLGFKEAGDVTATELFY 233

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
            EMV RG  PN  TY I + G+ +     EA R F +M +   +I V   TT++HG GV 
Sbjct: 234 HEMVKRGFKPNSVTYGIRIDGFCKKRNFGEALRLFEDMDRLDFDITVQILTTLIHGSGVA 293

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
               +AR +FD +   G+ P    YNA++  L K   V  AI V +EM  KG  P+S T+
Sbjct: 294 RNKIKARQLFDEISKRGLTPDCGAYNALMSSLMKCGDVSGAIKVMKEMEEKGIEPDSVTF 353

Query: 351 NVVIRGLCHTGE--MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           + +  G+  + E       E+  +MK+    P   T  +L++ FC  GE+  GL+L++ M
Sbjct: 354 HSMFIGMMKSKEFGFNGVCEYYQKMKERSLVPKTPTIVMLMKLFCHNGEVNLGLDLWKYM 413

Query: 409 -GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450
              G C P+     +L +++  R++++D   A +   + V+RG
Sbjct: 414 LEKGYC-PHGHALELLTTALCARRRAND---AFECSWQTVERG 452



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 79/178 (44%), Gaps = 14/178 (7%)

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT---GEMERALEFVG 371
           +   + +L +    + A  +  E V K Y PN  ++  +   LC     G  E  LE   
Sbjct: 106 FEKTLHILARMRYFDQAWALMAE-VRKDY-PNLLSFKSMSILLCKIAKFGSYEETLEAFV 163

Query: 372 RMKDD--ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
           +M+ +    +  V  +NIL+R FC   E++    +FEK+ S    P++ T NIL+     
Sbjct: 164 KMEKEIFRKKFGVDEFNILLRAFCTEREMKEARSIFEKLHSRFN-PDVKTMNILLLGF-- 220

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
            K++ D+        EMV RGF P   T+   ++G     N G   E LRL     RL
Sbjct: 221 -KEAGDVTATELFYHEMVKRGFKPNSVTYGIRIDGFCKKRNFG---EALRLFEDMDRL 274


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 89/275 (32%), Positives = 155/275 (56%), Gaps = 4/275 (1%)

Query: 156 RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIA 214
            A+K+F S+ + G    + ++N ++D L KE +V +A+ LF  + +   + D I+Y V  
Sbjct: 166 EALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFI 225

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
           +G C   R   AL +LK+M ++G  P++ ++N V+ G  +  +++EA      M+ + C 
Sbjct: 226 DGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCS 285

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK---KDSVENA 331
            + +++ T++ G    G+ K+A   F  M+  GV P+V TYN ++  LCK   +  ++ A
Sbjct: 286 PNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEA 345

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
           I +F+ M+ KG +P+  TY+ +I GL   G+++ A   +G M+   C PNV TYN LI  
Sbjct: 346 ITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISG 405

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
            C   +++  LELF  M    C+P+  TY  +IS+
Sbjct: 406 LCGLEKVDEALELFVAMVEKGCVPDTITYGTIISA 440



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 190/381 (49%), Gaps = 8/381 (2%)

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
             R+ D + ++    RM      P   T+  +   +   G+ D A+KIF    + G    
Sbjct: 23  GGRMSDAQALY---ERMIKAGYSPDVVTYNTLLHGFCKVGELDEALKIFDGAVKRGFVPD 79

Query: 173 LNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLK 231
           + ++N +++  CK  K+++A  +  ++       DV++YN + NG C   R ++A  ++ 
Sbjct: 80  VVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRVDEARMLI- 138

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQ-IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
             VD+G +PN+ TY+ ++ G  R  + + EA + F  + K+  E +V TY  ++ G    
Sbjct: 139 --VDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKE 196

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
             +  A  +F G+V  G+ P   TY   I  LCK   VE+A+L+ ++M  KG +P+  ++
Sbjct: 197 DRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSH 256

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           N VI GLC    ++ A   +  M+   C PN  ++N LI   C AG+ ++ +  F++M  
Sbjct: 257 NAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLK 316

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
               P + TYNIL+  +   ++   +  A  L   M+++G +P   T++ +++GL   G 
Sbjct: 317 RGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGK 376

Query: 471 QGLAKEILRLQSRCGRLPRQF 491
              A+ +L      G +P  +
Sbjct: 377 LDDARRLLGAMEAKGCIPNVY 397



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 176/334 (52%), Gaps = 9/334 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+  +   +  A K D A +I   M        + ++N++++ LCK  +V++A  L
Sbjct: 78  PDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRVDEARML 137

Query: 196 FKVFRGKFKADVISYNVIANGWCL-VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             V +G F  +VI+Y+ + +G C  ++  ++AL++   ++ +G  P + TYNI++ G  +
Sbjct: 138 I-VDKG-FSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLK 195

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
             ++ EA+  F  + K   E D +TYT  + G    G ++ A  +   M   G +P V +
Sbjct: 196 EDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVS 255

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           +NA+I  LCK+  V+ A ++   M  KG  PN+ ++N +I G C  G+ ++A+     M 
Sbjct: 256 HNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEML 315

Query: 375 DDECEPNVQTYNILIRYFCDA---GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
               +P V TYNIL+   C A   G I+  + LF+ M     +P++ TY+ LI  +    
Sbjct: 316 KRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAG 375

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           K DD   A +LL  M  +G +P  +T+N +++GL
Sbjct: 376 KLDD---ARRLLGAMEAKGCIPNVYTYNSLISGL 406



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 179/344 (52%), Gaps = 11/344 (3%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++ RM S +L P   T+  +       G+ D A  + +   + G   ++ +++T++  LC
Sbjct: 102 ILQRMVSENLVPDVVTYNSLVNGLCKNGRVDEARMLIV---DKGFSPNVITYSTLISGLC 158

Query: 185 KE-KKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           +E + V +A  LF  V +  ++ +V +YN++ +G     R N+A E+   +V  GL P+ 
Sbjct: 159 RELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDA 218

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TY + + G  +AG++E+A     +M ++ C  DVV++  +++G      +  A  +  G
Sbjct: 219 ITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSG 278

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC---H 359
           M   G  P+  ++N +I   C+    + A+  F+EM+ +G  P   TYN+++ GLC    
Sbjct: 279 MEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQ 338

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419
            G ++ A+     M +    P+V TY+ LI     AG+++    L   M +  C+PN+ T
Sbjct: 339 EGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYT 398

Query: 420 YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           YN LIS +   +K D+ L   +L + MV++G +P   T+  +++
Sbjct: 399 YNSLISGLCGLEKVDEAL---ELFVAMVEKGCVPDTITYGTIIS 439



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 176/355 (49%), Gaps = 10/355 (2%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M+     P + T+  +     + G+   A  ++  M + G    + ++NT+L   CK  +
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 189 VEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
           +++A  +F   V RG F  DV++YN + NG+C   + ++A  +L+ MV   L P++ TYN
Sbjct: 61  LDEALKIFDGAVKRG-FVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYN 119

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG-VVGEIKRARNVFDGMVN 305
            ++ G  + G+++EA    ++   +    +V+TY+T++ G    +  +  A  +F  ++ 
Sbjct: 120 SLVNGLCKNGRVDEARMLIVD---KGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLK 176

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G  P V TYN +I  L K+D V  A  +F  +V  G  P++ TY V I GLC  G +E 
Sbjct: 177 QGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVED 236

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           AL  +  M +  C P+V ++N +I   C    ++    L   M +  C PN  ++N LI 
Sbjct: 237 ALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLIC 296

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
                 K    +   K   EM+ RG  P   T+N +++GL     +G  KE + L
Sbjct: 297 GQCRAGKWKKAMTTFK---EMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITL 348



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 87/257 (33%), Positives = 126/257 (49%), Gaps = 7/257 (2%)

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M   G  PN  TYN +L G    G++ +A   +  M K     DVVTY T++HGF  VGE
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           +  A  +FDG V  G +P V TYNA+I   CK D ++ A  + + MV +  +P+  TYN 
Sbjct: 61  LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNS 120

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC-DAGEIERGLELFEKMGSG 411
           ++ GLC  G ++ A   +    D    PNV TY+ LI   C +   +   L+LF  +   
Sbjct: 121 LVNGLCKNGRVDEARMLI---VDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQ 177

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
              P + TYNILI  +    K D +  A +L   +V  G  P   T+   ++GL   G  
Sbjct: 178 GYEPEVPTYNILIDGLL---KEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRV 234

Query: 472 GLAKEILRLQSRCGRLP 488
             A  +L+     G +P
Sbjct: 235 EDALLMLKDMDEKGCVP 251


>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 120/409 (29%), Positives = 193/409 (47%), Gaps = 16/409 (3%)

Query: 77  KRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGP 136
           K   + ALK L    ++   P       +F+  I    ++        LV RM      P
Sbjct: 266 KNQVSEALKLLEEMFVMGCMP----DVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYP 321

Query: 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF 196
              T+  +       GK + A KI + +    C  +    NT+++      ++++A +  
Sbjct: 322 DNMTYGFLLHGLCRIGKLNEARKILIKIP---CPNNA-ILNTLINGYVMSGQLKEAQSFL 377

Query: 197 K--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
              +    F+ D+ +YN++ +G C     + A +++ EM  RG  PN+ TY I++ G  +
Sbjct: 378 NETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCK 437

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
           AG +EEA     EM  R   I+ V Y  ++       ++  A N+   M   G  P + T
Sbjct: 438 AGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFT 497

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN++I  LCK D ++ A  +F  M+  G + N+ TYN +I  L   G  ++AL  V  M 
Sbjct: 498 YNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDML 557

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
              C  +  TYN LI+ FC  G IE+GLEL+E+M       +  + NI+I+ +    K D
Sbjct: 558 FRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVD 617

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           +   A + L + ++RGF+P   T+N VLNGL  +G     KE L L  R
Sbjct: 618 N---AFEFLRDAINRGFVPDIVTYNSVLNGLCKVGR---IKEALNLFDR 660



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 111/414 (26%), Positives = 183/414 (44%), Gaps = 39/414 (9%)

Query: 87  LHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAE 146
           L  F  +     Y H+   +   I+    +  ++ +  L+ +MK   +   +  F II +
Sbjct: 96  LEIFERVGGQKGYCHTFDVYYVFINKLGAIGKFKLIDKLLMQMKEEGIVFRESIFMIIMK 155

Query: 147 RYVSAGKADRAVKIFLSMHE-HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FK 204
            Y  AG+  +A+++ L M   + C  +  S++ +L++L      + A N+F     K   
Sbjct: 156 HYGKAGQPGQAIRLLLDMRAVYLCEPTFKSYDLVLEILVTGNCPQVATNVFYDMLSKGVS 215

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
             V ++ ++    C+    + A  +L++M   G  PN   Y  ++    +  Q+ EA + 
Sbjct: 216 PTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKL 275

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
             EM    C  DV T+  ++HG   V +I  A  + D M+  G  P   TY  ++  LC+
Sbjct: 276 LEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCR 335

Query: 325 KDSV-------------ENAIL-------------------VFEEMVGKGYMPNSTTYNV 352
              +              NAIL                   + E M+  G+ P+  TYN+
Sbjct: 336 IGKLNEARKILIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNI 395

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER-GLELFEKMGSG 411
           ++ GLC  G +  A + V  M    CEPNV TY IL+   C AG +E  GL L E    G
Sbjct: 396 LMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARG 455

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           + + N   YN LI ++  ++K     VA  LL EM  +G  P  FT+N ++ GL
Sbjct: 456 LTI-NSVIYNCLICALCRKEKVH---VALNLLSEMCTKGCKPDLFTYNSLIYGL 505



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 110/414 (26%), Positives = 182/414 (43%), Gaps = 38/414 (9%)

Query: 92  ILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149
           +L     Y   P+  S+D  +++       +    + + M S  + PT  TF I+ +   
Sbjct: 170 LLDMRAVYLCEPTFKSYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALC 229

Query: 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVI 208
              + D A  +   M +HGC  +   + T++  L ++ +V +A  L  ++F      DV 
Sbjct: 230 MFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQ 289

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY----------------------- 245
           ++N + +G C V + + A +++  M+ RG  P+  TY                       
Sbjct: 290 TFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKI 349

Query: 246 --------NIVLKGYFRAGQIEEAWRFFLE-MKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
                   N ++ GY  +GQ++EA  F  E M     + D+ TY  ++HG    G +  A
Sbjct: 350 PCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFA 409

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
           R++ + M   G  P+V TY  ++  LCK   +E A LV  EM  +G   NS  YN +I  
Sbjct: 410 RDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICA 469

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
           LC   ++  AL  +  M    C+P++ TYN LI   C    I+    LF  M     + N
Sbjct: 470 LCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVAN 529

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
             TYN LI ++  R      L    L+ +M+ RG    K T+N ++     +GN
Sbjct: 530 NVTYNTLIHALLRRGAFQKALT---LVNDMLFRGCTLDKITYNGLIKAFCKVGN 580



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 157/341 (46%), Gaps = 3/341 (0%)

Query: 98  TYAHSPSSFDHAIDLAARLRDYRTVWT--LVHRMKSLSLGPTQKTFAIIAERYVSAGKAD 155
            +   P  F + I +    ++    +   LV+ M      P   T+AI+      AG  +
Sbjct: 383 NFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLE 442

Query: 156 RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIA 214
            A  +   M   G   +   +N ++  LC+++KV  A NL      K  K D+ +YN + 
Sbjct: 443 EAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLI 502

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
            G C V R ++A  +   M+  G   N  TYN ++    R G  ++A     +M  R C 
Sbjct: 503 YGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCT 562

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
           +D +TY  ++  F  VG I++   +++ M+  G+     + N MI  LCK   V+NA   
Sbjct: 563 LDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEF 622

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
             + + +G++P+  TYN V+ GLC  G ++ AL    R++ +   P+  TYN  I + C 
Sbjct: 623 LRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCK 682

Query: 395 AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
            G +      F +      +P+  T+N+L+ ++  +   ++
Sbjct: 683 EGMVNDACLFFYRGIENGFVPSNLTWNVLVYTLLKQSNQEN 723



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 172/361 (47%), Gaps = 6/361 (1%)

Query: 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ 171
           ++ +L++ ++   L   M +    P   T+ I+       G    A  +   M   GC  
Sbjct: 366 MSGQLKEAQSF--LNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEP 423

Query: 172 SLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVL 230
           ++ ++  +++ LCK   +E+A  +      +    + + YN +    C  ++ + AL +L
Sbjct: 424 NVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLL 483

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
            EM  +G  P+L TYN ++ G  +  +I+EA+R F  M       + VTY T++H     
Sbjct: 484 SEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRR 543

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           G  ++A  + + M+  G      TYN +I+  CK  ++E  + ++E+M+  G   ++ + 
Sbjct: 544 GAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISC 603

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           N++I GLC  G+++ A EF+    +    P++ TYN ++   C  G I+  L LF+++  
Sbjct: 604 NIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQV 663

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
               P+  TYN  IS        +D   A       ++ GF+P   T+N ++  LL   N
Sbjct: 664 EGVRPDAFTYNTFISWQCKEGMVND---ACLFFYRGIENGFVPSNLTWNVLVYTLLKQSN 720

Query: 471 Q 471
           Q
Sbjct: 721 Q 721



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 112/252 (44%), Gaps = 3/252 (1%)

Query: 90  FNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
            N+LS   T    P   +++  I    ++      + L H M          T+  +   
Sbjct: 480 LNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHA 539

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKAD 206
            +  G   +A+ +   M   GC     ++N ++   CK   +EK   L+ ++      AD
Sbjct: 540 LLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGAD 599

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
            IS N++ NG C V + + A E L++ ++RG  P++ TYN VL G  + G+I+EA   F 
Sbjct: 600 TISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFD 659

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
            ++      D  TY T +      G +  A   F   +  G +PS  T+N ++  L K+ 
Sbjct: 660 RLQVEGVRPDAFTYNTFISWQCKEGMVNDACLFFYRGIENGFVPSNLTWNVLVYTLLKQS 719

Query: 327 SVENAILVFEEM 338
           + EN   V +E+
Sbjct: 720 NQENNFFVLDEL 731



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 135/294 (45%), Gaps = 36/294 (12%)

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK-RKCEIDVVTYTTIVHG 286
           ++L +M + G+    + + I++K Y +AGQ  +A R  L+M+    CE    +Y  ++  
Sbjct: 133 KLLMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDMRAVYLCEPTFKSYDLVLEI 192

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
                  + A NVF  M++ GV P+V T+  +++ LC  + V++A  +  +M   G +PN
Sbjct: 193 LVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPN 252

Query: 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
           S  Y  +I  L    ++  AL+ +  M    C P+VQT+N +I   C   +I    +L +
Sbjct: 253 SIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVD 312

Query: 407 KMG---------------SGVC----------------LPNLDTYNILISSMFVRKKSDD 435
           +M                 G+C                 PN    N LI+   +   S  
Sbjct: 313 RMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIPCPNNAILNTLINGYVM---SGQ 369

Query: 436 LLVAGKLLIE-MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           L  A   L E M++ GF P  FT+N +++GL   G+   A++++   SR G  P
Sbjct: 370 LKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEP 423


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 170/337 (50%), Gaps = 33/337 (9%)

Query: 176 FNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           +N I+D +CK K V  A++L+ ++   +   DV +YN + +G+  V + N A+++  +M 
Sbjct: 204 YNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMK 263

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
              +NPN+ T+NI++ G+ + G++ +A      M K   + DVVTY +++ G+  + ++ 
Sbjct: 264 KENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVN 323

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
           +A+++FD M +GGV+ +V  Y  M+   CK   V+ AI +FEEM  +  +PN  TY+ +I
Sbjct: 324 KAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLI 383

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
            GLC  G +  AL+ V  M D    PN+ TY+ ++   C    +++ + L   +      
Sbjct: 384 DGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIR 443

Query: 415 PNLDTYNILISSMF-------VRKKSDDLLVAG-------------------------KL 442
           P++ TY ILI  +         +   +DLLV G                          L
Sbjct: 444 PDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALAL 503

Query: 443 LIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           L +M D G +P   T+  V+  L        A+++LR
Sbjct: 504 LSKMEDNGCIPNAKTYELVILSLFEKDENDTAEKLLR 540



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 179/377 (47%), Gaps = 4/377 (1%)

Query: 90  FNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149
           FN L  H         F+  +    + + + T  +L  +M+   +     TF I+   + 
Sbjct: 48  FNHLLLHKNPTPPTFQFNKILSSLVKAKHHSTALSLHQQMELNGIESDFFTFNILINCFS 107

Query: 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVI 208
             G    +  IF  + + G   +  +FNT++  LC +  + +A +   KV    F  D +
Sbjct: 108 QLGLNSLSFSIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQV 167

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           SY  + NG C V R   AL++LK +  + + PN   YN+++    +A  + +A+  + +M
Sbjct: 168 SYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQM 227

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
             ++   DV TY  ++ GF  V ++  A ++F+ M    + P+V T+N ++   CK+  V
Sbjct: 228 VAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKV 287

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
            +A +V   M+     P+  TYN ++ G C   ++ +A +    M       NVQ Y  +
Sbjct: 288 NDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTM 347

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           +  FC    ++  + LFE+M     +PN+ TY+ LI  +    K   +  A KL+ EM D
Sbjct: 348 VNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLC---KLGRIFYALKLVDEMHD 404

Query: 449 RGFMPRKFTFNRVLNGL 465
           RG  P   T++ +L+ L
Sbjct: 405 RGQPPNIVTYSSILDAL 421



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 154/285 (54%), Gaps = 1/285 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L ++MK  ++ P   TF I+ + +   GK + A  +   M +   +  + ++N+++D  C
Sbjct: 258 LFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYC 317

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
              KV KA ++F  +  G   A+V  Y  + NG+C +K  ++A+ + +EM  R + PN+ 
Sbjct: 318 SINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVV 377

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY+ ++ G  + G+I  A +   EM  R    ++VTY++I+        + +A  +   +
Sbjct: 378 TYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNL 437

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            + G+ P + TY  +I+ LC+   +E+A  VFE+++ KGY  +   Y V+I+G C  G  
Sbjct: 438 KDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFF 497

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           ++AL  + +M+D+ C PN +TY ++I    +  E +   +L  +M
Sbjct: 498 DKALALLSKMEDNGCIPNAKTYELVILSLFEKDENDTAEKLLREM 542



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 127/267 (47%), Gaps = 39/267 (14%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            ++ D + V  ++  MK   + P   T+  + + Y S  K ++A  IF SM   G   ++
Sbjct: 285 GKVNDAKVVLAIM--MKD-DIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANV 341

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKE 232
             + T+++  CK K V++A NLF+  R  K   +V++Y+ + +G C + R   AL+++ E
Sbjct: 342 QIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDE 401

Query: 233 MVDRG-----------------------------------LNPNLTTYNIVLKGYFRAGQ 257
           M DRG                                   + P++ TY I++KG  ++G+
Sbjct: 402 MHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGR 461

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           +E+A   F ++  +   +DV  YT ++ GF   G   +A  +   M + G +P+  TY  
Sbjct: 462 LEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAKTYEL 521

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYM 344
           +I  L +KD  + A  +  EM+ +G +
Sbjct: 522 VILSLFEKDENDTAEKLLREMIVRGLL 548



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 74/174 (42%), Gaps = 6/174 (3%)

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMV-GKGYMPNSTTYNVVIRGLCHTGEMER 365
           G+ PS  +     Q+  K+D   N I  F  ++  K   P +  +N ++  L        
Sbjct: 22  GLFPS--SIRLFSQLHHKQDEENNLISSFNHLLLHKNPTPPTFQFNKILSSLVKAKHHST 79

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           AL    +M+ +  E +  T+NILI  F   G       +F K+      P   T+N LI 
Sbjct: 80  ALSLHQQMELNGIESDFFTFNILINCFSQLGLNSLSFSIFAKILKKGYHPTAITFNTLIK 139

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
            + ++      L       ++V +GF   + ++  ++NGL  +G    A ++L+
Sbjct: 140 GLCLKGHIHQAL---HFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLK 190


>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
          Length = 833

 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 103/370 (27%), Positives = 178/370 (48%), Gaps = 20/370 (5%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++  M + +  P   T+ I+ +R    GK + A  +F  M +HG    + +FN +++  C
Sbjct: 256 MLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYC 315

Query: 185 KEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           KE  V  A+ L  V  +G  K ++ +YN +  G C V ++ KA  +L+ +VD GL P+  
Sbjct: 316 KEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRV 375

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYNI++ G+ + GQ+  A+  F  M     E D  T+T ++ G   +G +++A  +   M
Sbjct: 376 TYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSM 435

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           V  G+     T+ A+I   CK    ++   +FE MV    +  + T+N  +  L    ++
Sbjct: 436 VKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKL 495

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             A   +G+M      P+V T+ ILI   C AGE    L++ E+M    C PN+ TY I+
Sbjct: 496 NEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTII 555

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I+ +    + ++   A  +L  M   G  P  FT+                  +++   +
Sbjct: 556 INGLCNNGRVEE---AETILFSMSSFGVSPNHFTY----------------AVLVKAHVK 596

Query: 484 CGRLPRQFKL 493
            GRL R F++
Sbjct: 597 AGRLDRAFQI 606



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 111/442 (25%), Positives = 193/442 (43%), Gaps = 81/442 (18%)

Query: 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH 167
           H +  A RL +    + L   M      P+ +T+ ++ +     G  D+A+K+   M   
Sbjct: 207 HGLCEAGRLEE---AFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATK 263

Query: 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLFK------------------------------ 197
            C  +++++  ++D LC+E K+E+A  +F+                              
Sbjct: 264 ACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSA 323

Query: 198 ------VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
                 + +G  K ++ +YN +  G C V ++ KA  +L+ +VD GL P+  TYNI++ G
Sbjct: 324 FQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDG 383

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
           + + GQ+  A+  F  M     E D  T+T ++ G   +G +++A  +   MV  G+   
Sbjct: 384 FCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLD 443

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMV------------------GKGY---------- 343
             T+ A+I   CK    ++   +FE MV                  GK Y          
Sbjct: 444 EVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLG 503

Query: 344 -------MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
                  +P+  T+ ++I G C  GE   +L+ + RMK   C PNV TY I+I   C+ G
Sbjct: 504 KMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNG 563

Query: 397 EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
            +E    +   M S    PN  TY +L+ +     K+  L  A +++  MV  G  P   
Sbjct: 564 RVEEAETILFSMSSFGVSPNHFTYAVLVKA---HVKAGRLDRAFQIVSTMVKNGCQPNSH 620

Query: 457 TFNRVLNGLLL----IGNQGLA 474
            ++ +L+G +L    IG + L+
Sbjct: 621 IYSALLSGFVLSNTAIGARALS 642



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 153/308 (49%), Gaps = 13/308 (4%)

Query: 184 CKEKKVEKAYNLFKVFRGK--FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           C+   + +A+ +F+    +   + + ++Y+++ +G C   R  +A ++ +EMV++G  P+
Sbjct: 174 CRRDDLGEAFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPS 233

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
             TY +++K     G  ++A +   EM  + C  +V TYT ++      G+I+ A  VF 
Sbjct: 234 TRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFR 293

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M+  G+ P + T+NA+I   CK+  V +A  +   M      PN  TYN ++ GLC   
Sbjct: 294 KMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVS 353

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
           +  +A   + R+ D+   P+  TYNIL+  FC  G++     +F  M S    P+  T+ 
Sbjct: 354 KSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFT 413

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL- 480
            LI  +    K   L  A  +L  MV +G    + TF  +++G   IG    AK++  L 
Sbjct: 414 ALIDGLC---KLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGK---AKDVCFLF 467

Query: 481 ----QSRC 484
               ++RC
Sbjct: 468 ENMVENRC 475



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 145/334 (43%), Gaps = 8/334 (2%)

Query: 62  CPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDY 119
           CP +     L++   K  W      +  F +LS        P+  +++  ++   R+   
Sbjct: 301 CPGIITFNALINGYCKEGW-----VVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKS 355

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
              + L+ R+    L P + T+ I+ + +   G+ + A  IF SM+  G      +F  +
Sbjct: 356 YKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTAL 415

Query: 180 LDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           +D LCK  ++E+A  +   + +     D +++  + +G C + +      + + MV+   
Sbjct: 416 IDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRC 475

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
                T+N  L    +  ++ EA     +M K      VVT+T ++ G    GE   +  
Sbjct: 476 LTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLK 535

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
           + + M   G  P+V TY  +I  LC    VE A  +   M   G  PN  TY V+++   
Sbjct: 536 MLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHV 595

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
             G ++RA + V  M  + C+PN   Y+ L+  F
Sbjct: 596 KAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGF 629



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 83/394 (21%), Positives = 156/394 (39%), Gaps = 77/394 (19%)

Query: 90  FNILSYHPTYAHSPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
           FNI +   +    P  F     ID   +L        ++  M    +   + TF  + + 
Sbjct: 394 FNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDG 453

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA---------YNLFK- 197
           +   GKA     +F +M E+ C  + ++FN  LD L K+ K+ +A         Y L   
Sbjct: 454 HCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPS 513

Query: 198 ------VFRGKFKA--------------------DVISYNVIANGWCLVKRTNKALEVLK 231
                 +  G  +A                    +V +Y +I NG C   R  +A  +L 
Sbjct: 514 VVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILF 573

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF---- 287
            M   G++PN  TY +++K + +AG+++ A++    M K  C+ +   Y+ ++ GF    
Sbjct: 574 SMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSN 633

Query: 288 GVVG---------------------------------EIKRARNVFDGMVNGGVLPSVAT 314
             +G                                 ++  A  + D +   GV P+   
Sbjct: 634 TAIGARALSSTGDLDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGV-PTEDL 692

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN ++  LCK+  +  A  + ++MV  G  P+    ++ I   C T + +  LEF+  + 
Sbjct: 693 YNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDKAISSI-IEHYCKTCKYDNCLEFMKLVL 751

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           D++  P+  +Y  +I    + G ++   +L   +
Sbjct: 752 DNKFVPSFASYCWVIHGLRNEGRVQEAQKLVSDL 785



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 90/225 (40%), Gaps = 39/225 (17%)

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
            DGM   G   S   Y+ ++  L K +    A LV+  MV +G++     Y  V+  LC 
Sbjct: 81  LDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCK 140

Query: 360 TGEMERALEFVGRM------------------------------------KDDECEPNVQ 383
            G ++ A  F  ++                                    K++ C PN  
Sbjct: 141 NGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEESCRPNSV 200

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
           TY+ILI   C+AG +E   +L ++M    C P+  TY +LI +      +D    A K+L
Sbjct: 201 TYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDK---AMKML 257

Query: 444 IEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            EM  +  +P   T+  +++ L   G    A  + R   + G  P
Sbjct: 258 DEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCP 302


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 172/344 (50%), Gaps = 4/344 (1%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
           V  L+  M+   L P   T+  +       GK   A ++   M   G       + T++D
Sbjct: 207 VLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLID 266

Query: 182 LLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
             CK   V  AY LF ++ + K   D I+Y  +  G C   R  +A ++  EMV + L P
Sbjct: 267 GFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEP 326

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           +  TY  ++ GY + G+++EA+    +M +     ++VTYT +  G    GE+  A  + 
Sbjct: 327 DEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELL 386

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
             M   G+  ++ TYN+++  LCK  +++ A+ + ++M   G+ P++ TY  ++   C +
Sbjct: 387 HEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKS 446

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
            EM RA E + +M D E +P V T+N+L+  FC +G +E G +L + M     +PN  TY
Sbjct: 447 REMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTY 506

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           N LI    +R   +++    ++   M  +G +P   T+N ++ G
Sbjct: 507 NSLIKQYCIR---NNMRATTEIYRGMCAKGVVPDGNTYNILIKG 547



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 172/339 (50%), Gaps = 4/339 (1%)

Query: 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVIS 209
           A K +  +K+   M   G + +  ++N ++ LLCK  KV +A  + + +       D + 
Sbjct: 201 ALKGEWVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVI 260

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           Y  + +G+C +   + A  +  EM  R ++P+  TY  V+ G  + G++ EA + F EM 
Sbjct: 261 YTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMV 320

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
            ++ E D VTYT ++ G+   G++K A ++ + M+  G+ P++ TY A+   LCK   V+
Sbjct: 321 CKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVD 380

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
            A  +  EM  KG   N  TYN ++ GLC  G +++A++ +  M+     P+  TY  L+
Sbjct: 381 TANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLM 440

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
             +C + E+ R  EL  +M      P + T+N+L++   +    +D     KLL  M+++
Sbjct: 441 DAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLED---GEKLLKWMLEK 497

Query: 450 GFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           G MP   T+N ++    +  N     EI R     G +P
Sbjct: 498 GIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVP 536



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 167/340 (49%), Gaps = 11/340 (3%)

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEK-------KVEKAYNLFKVFRGK-FKADVI 208
           A K+F  M  +G   S++S N  +  L ++        K E    L +  + K  K +  
Sbjct: 165 ARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKGEWVLKLIEEMQIKGLKPNPY 224

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           +YN +    C   +  +A  VL+EM+  G+ P+   Y  ++ G+ + G +  A+R F EM
Sbjct: 225 TYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEM 284

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
           +KRK   D +TYT ++ G    G +  A  +F  MV   + P   TY A+I   CK+  +
Sbjct: 285 QKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKM 344

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           + A  +  +M+  G  PN  TY  +  GLC  GE++ A E +  M     E N+ TYN L
Sbjct: 345 KEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSL 404

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           +   C AG I++ ++L + M      P+  TY  L+ +     KS +++ A +LL +M+D
Sbjct: 405 VNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYC---KSREMVRAHELLRQMLD 461

Query: 449 RGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           R   P   TFN ++NG  + G     +++L+     G +P
Sbjct: 462 RELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMP 501



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 174/355 (49%), Gaps = 12/355 (3%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID   +L +  + + L   M+   + P   T+  +       G+   A K+F   HE  C
Sbjct: 265 IDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLF---HEMVC 321

Query: 170 RQ---SLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNK 225
           ++      ++  ++D  CKE K+++A++L  ++ +     ++++Y  +A+G C     + 
Sbjct: 322 KRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDT 381

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
           A E+L EM  +GL  N+ TYN ++ G  +AG I++A +   +M+      D VTYTT++ 
Sbjct: 382 ANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMD 441

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
            +    E+ RA  +   M++  + P+V T+N ++   C    +E+   + + M+ KG MP
Sbjct: 442 AYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMP 501

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           N+TTYN +I+  C    M    E    M      P+  TYNILI+  C A  ++    L 
Sbjct: 502 NATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLH 561

Query: 406 EKM-GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
             M G G  L  + +YN LI   + RKK    L A +L  +M   G +  +  +N
Sbjct: 562 RDMVGKGFNL-TVSSYNALIKGFYKRKK---FLEARELFEQMRREGLVADREIYN 612



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 149/300 (49%), Gaps = 1/300 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L H M    L P + T+  + + Y   GK   A  +   M + G   ++ ++  + D LC
Sbjct: 315 LFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLC 374

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  +V+ A  L  ++ R   + ++ +YN + NG C     ++A++++K+M   G +P+  
Sbjct: 375 KCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAV 434

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY  ++  Y ++ ++  A     +M  R+ +  VVT+  +++GF + G ++    +   M
Sbjct: 435 TYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWM 494

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           +  G++P+  TYN++I+  C ++++     ++  M  KG +P+  TYN++I+G C    M
Sbjct: 495 LEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNM 554

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A      M        V +YN LI+ F    +     ELFE+M     + + + YNI 
Sbjct: 555 KEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIF 614



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 160/318 (50%), Gaps = 1/318 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   ID   +    +  ++L ++M  + L P   T+  +A+     G+ D A ++   M
Sbjct: 330 TYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEM 389

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRT 223
              G   ++ ++N++++ LCK   +++A  L K      F  D ++Y  + + +C  +  
Sbjct: 390 CRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREM 449

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A E+L++M+DR L P + T+N+++ G+  +G +E+  +    M ++    +  TY ++
Sbjct: 450 VRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSL 509

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +  + +   ++    ++ GM   GV+P   TYN +I+  CK  +++ A  +  +MVGKG+
Sbjct: 510 IKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGF 569

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
               ++YN +I+G     +   A E   +M+ +    + + YNI      D G++E  LE
Sbjct: 570 NLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKMELTLE 629

Query: 404 LFEKMGSGVCLPNLDTYN 421
           L ++      + ++ T N
Sbjct: 630 LCDEAIEKCLVGDIQTKN 647



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 149/361 (41%), Gaps = 60/361 (16%)

Query: 185 KEKKVEKAYNLFKVFRGKFKADVI---------SYNVIAN--GWCLVKR----------- 222
           K+++ E    + K +  KF+AD +          Y ++ +   W  ++R           
Sbjct: 74  KQRRSEPLRRVLKPYESKFRADHLIWVLMNIKNDYRLVLSFFEWACLRRDPSLEARCIVA 133

Query: 223 ----TNKALEVLKEMV-DRGLNPNLT--------------TYNIV--------------- 248
                +K L++ ++++ D  +NPNL                Y ++               
Sbjct: 134 QIATASKDLKMARKLIQDFWVNPNLDVGVSFARKLFDKMLNYGLLISVDSCNLFISHLSE 193

Query: 249 -LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
            L G   A + E   +   EM+ +  + +  TY  ++      G++  A  V   M++ G
Sbjct: 194 DLDGIKIALKGEWVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEG 253

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           + P    Y  +I   CK  +V +A  +F+EM  +   P+  TY  VI GLC TG +  A 
Sbjct: 254 IAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEAD 313

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           +    M     EP+  TY  LI  +C  G+++    L  +M      PN+ TY  L   +
Sbjct: 314 KLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGL 373

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
               K  ++  A +LL EM  +G     +T+N ++NGL   GN   A ++++     G  
Sbjct: 374 C---KCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFH 430

Query: 488 P 488
           P
Sbjct: 431 P 431


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 107/370 (28%), Positives = 178/370 (48%), Gaps = 11/370 (2%)

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
             R+ D + ++    RM      P   T+  +   +   GK D A+KIF    + G    
Sbjct: 98  GGRMSDAQALY---ERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPD 154

Query: 173 LNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLK 231
           + ++N +++  CK  K+++A  +  ++       DV++YN + NG C   R ++A  ++ 
Sbjct: 155 VVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLI- 213

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE-MKKRKCEIDVVTYTTIVHGFGVV 290
             VD+G +PN+ TY+ ++ G  R  +  E+ R  LE M    C+ D+V+Y  ++HG    
Sbjct: 214 --VDKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLARE 271

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
             +  A  +F  ++  G  P V TYN +I  L K+D V  A  +F  +V  G  P++ TY
Sbjct: 272 QGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITY 331

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
            V I GLC  G +E AL  +  M +  C P+V ++N +I   C    ++    L   M +
Sbjct: 332 TVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEA 391

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
             C PN  ++N LI       K    +   K   EM+ RG  P   T+N +++GL     
Sbjct: 392 KGCSPNAISFNTLICGQCRAGKWKKAMTTFK---EMLKRGVKPTVVTYNILVDGLCKARQ 448

Query: 471 QGLAKEILRL 480
           +G  KE + L
Sbjct: 449 EGRIKEAITL 458



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 185/357 (51%), Gaps = 17/357 (4%)

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
           A+R+ D +TV+     M+     P + T+  +     + G+   A  ++  M + G    
Sbjct: 63  ASRIGDAQTVF---DGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPD 119

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVL 230
           + ++NT+L   CK  K+++A  +F   V RG F  DV++YN + NG+C   + ++A  +L
Sbjct: 120 VVTYNTLLHGFCKVGKLDEALKIFDGAVKRG-FVPDVVTYNALINGFCKADKLDEAQRIL 178

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
           + MV   L P++ TYN ++ G  + G+++EA    ++   +    +V+TY+T++ G    
Sbjct: 179 QRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIVD---KGFSPNVITYSTLISGL--C 233

Query: 291 GEIKR---ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
            E++R   AR + + MV  G  P + +YNA+I  L ++  V  A+ +F  ++ +GY P  
Sbjct: 234 RELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEV 293

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
            TYN++I GL     +  A E    +     EP+  TY + I   C AG +E  L + + 
Sbjct: 294 PTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKD 353

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           M    C+P++ ++N +I+ +   K+ D+  V   LL  M  +G  P   +FN ++ G
Sbjct: 354 MDEKGCVPDVVSHNAVINGLCKEKRVDEAEV---LLSGMEAKGCSPNAISFNTLICG 407



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 167/317 (52%), Gaps = 7/317 (2%)

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYN 211
           + + A ++   M  +GC+  + S+N ++  L +E+ V +A  LF  V R  ++ +V +YN
Sbjct: 238 RLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYN 297

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
           ++ +G     R N+A E+   +V  GL P+  TY + + G  +AG++E+A     +M ++
Sbjct: 298 ILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEK 357

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
            C  DVV++  +++G      +  A  +  GM   G  P+  ++N +I   C+    + A
Sbjct: 358 GCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKA 417

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLC---HTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           +  F+EM+ +G  P   TYN+++ GLC     G ++ A+     M +    P+V TY+ L
Sbjct: 418 MTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSAL 477

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           I     AG+++    L   M +  C+PN+ TYN LIS +    K D+ L   +L + MV+
Sbjct: 478 IDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEAL---ELFVAMVE 534

Query: 449 RGFMPRKFTFNRVLNGL 465
           +G +P   T+  +++ L
Sbjct: 535 KGCVPDTITYGTIISAL 551



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 181/346 (52%), Gaps = 11/346 (3%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++ RM S SL P   T+  +       G+ D A  + +   + G   ++ +++T++  LC
Sbjct: 177 ILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIV---DKGFSPNVITYSTLISGLC 233

Query: 185 KE-KKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           +E +++E A  L  K+     K D++SYN + +G    +  ++AL++   ++ +G  P +
Sbjct: 234 RELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEV 293

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TYNI++ G  +  ++ EA+  F  + K   E D +TYT  + G    G ++ A  +   
Sbjct: 294 PTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKD 353

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M   G +P V ++NA+I  LCK+  V+ A ++   M  KG  PN+ ++N +I G C  G+
Sbjct: 354 MDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGK 413

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDA---GEIERGLELFEKMGSGVCLPNLDT 419
            ++A+     M     +P V TYNIL+   C A   G I+  + LF+ M     +P++ T
Sbjct: 414 WKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVT 473

Query: 420 YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           Y+ LI  +    K DD   A +LL  M  +G +P  +T+N +++GL
Sbjct: 474 YSALIDGLGKAGKLDD---ARRLLGAMEAKGCIPNVYTYNSLISGL 516



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 97/293 (33%), Positives = 149/293 (50%), Gaps = 7/293 (2%)

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           +   +L  L K  K+EKA+   +    K   D+ ++N+  +G C   R   A  V   M 
Sbjct: 18  TVGILLRSLLKSGKIEKAHRFVEQLLVKGLCDISTFNIYISGLCRASRIGDAQTVFDGMR 77

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
             G  PN  TYN +L G    G++ +A   +  M K     DVVTY T++HGF  VG++ 
Sbjct: 78  KHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGKLD 137

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
            A  +FDG V  G +P V TYNA+I   CK D ++ A  + + MV +  +P+  TYN ++
Sbjct: 138 EALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLV 197

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC-DAGEIERGLELFEKMGSGVC 413
            GLC  G ++ A   +    D    PNV TY+ LI   C +   +E   +L EKM    C
Sbjct: 198 NGLCKNGRVDEARMLI---VDKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGC 254

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
            P++ +YN LI  +   +   + L   KL   ++ +G+ P   T+N +++GLL
Sbjct: 255 KPDIVSYNALIHGLAREQGVSEAL---KLFGSVLRQGYEPEVPTYNILIDGLL 304



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/357 (28%), Positives = 183/357 (51%), Gaps = 3/357 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+  +   +  A K D A +I   M        + ++N++++ LCK  +V++A  L
Sbjct: 153 PDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARML 212

Query: 196 FKVFRGKFKADVISYNVIANGWCL-VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             V +G F  +VI+Y+ + +G C  ++R   A ++L++MV  G  P++ +YN ++ G  R
Sbjct: 213 I-VDKG-FSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAR 270

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
              + EA + F  + ++  E +V TY  ++ G      +  A  +F G+V  G+ P   T
Sbjct: 271 EQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAIT 330

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y   I  LCK   VE+A+L+ ++M  KG +P+  ++N VI GLC    ++ A   +  M+
Sbjct: 331 YTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGME 390

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
              C PN  ++N LI   C AG+ ++ +  F++M      P + TYNIL+  +   ++  
Sbjct: 391 AKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEG 450

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
            +  A  L   M+++G +P   T++ +++GL   G    A+ +L      G +P  +
Sbjct: 451 RIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVY 507



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 89/278 (32%), Positives = 143/278 (51%), Gaps = 4/278 (1%)

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
            L P   T+ +  +    AG+ + A+ +   M E GC   + S N +++ LCKEK+V++A
Sbjct: 323 GLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEA 382

Query: 193 YNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
             L      K    + IS+N +  G C   +  KA+   KEM+ RG+ P + TYNI++ G
Sbjct: 383 EVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDG 442

Query: 252 YFRA---GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
             +A   G+I+EA   F  M ++    DVVTY+ ++ G G  G++  AR +   M   G 
Sbjct: 443 LCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGC 502

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
           +P+V TYN++I  LC  D V+ A+ +F  MV KG +P++ TY  +I  LC    +++AL 
Sbjct: 503 IPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALA 562

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
                 +    P    Y  LI   C    ++  L+L +
Sbjct: 563 LFDGSLEAGVVPTSGMYFSLIDGLCAVARVDEALKLLQ 600



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 153/306 (50%), Gaps = 4/306 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+ I+ +  +   + + A ++F  + +HG      ++   +D LCK  +VE A  +
Sbjct: 291 PEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLM 350

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            K    K    DV+S+N + NG C  KR ++A  +L  M  +G +PN  ++N ++ G  R
Sbjct: 351 LKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCR 410

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV---GEIKRARNVFDGMVNGGVLPS 311
           AG+ ++A   F EM KR  +  VVTY  +V G       G IK A  +FD M+  G +P 
Sbjct: 411 AGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPD 470

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
           V TY+A+I  L K   +++A  +   M  KG +PN  TYN +I GLC   +++ ALE   
Sbjct: 471 VVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFV 530

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
            M +  C P+  TY  +I   C    +++ L LF+       +P    Y  LI  +    
Sbjct: 531 AMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGLCAVA 590

Query: 432 KSDDLL 437
           + D+ L
Sbjct: 591 RVDEAL 596



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 10/132 (7%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           S+    +  A +L D R    L+  M++    P   T+  +        K D A+++F++
Sbjct: 475 SALIDGLGKAGKLDDARR---LLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVA 531

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVIS----YNVIANGWCL 219
           M E GC     ++ TI+  LCK++ V+KA  LF    G  +A V+     Y  + +G C 
Sbjct: 532 MVEKGCVPDTITYGTIISALCKQEMVDKALALFD---GSLEAGVVPTSGMYFSLIDGLCA 588

Query: 220 VKRTNKALEVLK 231
           V R ++AL++L+
Sbjct: 589 VARVDEALKLLQ 600



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 7/156 (4%)

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR-MKDDECEPNVQTYNILIRYF 392
           V++++V + Y P++ T  +++R L  +G++E+A  FV + +    C+  + T+NI I   
Sbjct: 4   VYDKLV-RIYSPDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLCD--ISTFNIYISGL 60

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
           C A  I     +F+ M      PN  TYN L+S +    +  D   A  L   M+  G+ 
Sbjct: 61  CRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSD---AQALYERMIKAGYS 117

Query: 453 PRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           P   T+N +L+G   +G    A +I     + G +P
Sbjct: 118 PDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVP 153


>gi|302141714|emb|CBI18917.3| unnamed protein product [Vitis vinifera]
          Length = 496

 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 162/342 (47%), Gaps = 36/342 (10%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII 144
           + L FFN  +    + HSP  +   IDLA +                             
Sbjct: 128 QTLAFFNWATNLEEFGHSPEPYMEMIDLAGK----------------------------- 158

Query: 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFK 204
                 AG A  AV  F  M ++GC+    +F+ ++  L K+++  +A + F   + +F+
Sbjct: 159 ------AGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFE 212

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
            DV+ Y  + +GWC     ++A  V  EM   G+ PN+ TY+IV+    R+GQI  A   
Sbjct: 213 PDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDV 272

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
           F EM    C+ + +T+  ++      G  ++   V++ M   G  P   TYN +I+  C+
Sbjct: 273 FSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCR 332

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
            D++E A+ +    V KG   N++++N +   +   G++  A     +MKD +C PN  T
Sbjct: 333 DDNLEEAVKILNS-VKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVT 391

Query: 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
           YNIL+R F D    +  L+L ++M      PN +TY +LIS+
Sbjct: 392 YNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLIST 433



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 104/241 (43%), Gaps = 1/241 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   ID   R         +   M  +   P   TF  +   +V AG+ ++ ++++  M
Sbjct: 252 TYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQM 311

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTN 224
              GC     ++N +++  C++  +E+A  +    +     +  S+N I      +   N
Sbjct: 312 KRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVKKGCNLNASSFNPIFGCISKLGDVN 371

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
            A  +  +M D    PN  TYNI+++ +      +   +   EM + + E +  TY  ++
Sbjct: 372 SAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLI 431

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVL-PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
             F  +G    A + F  M+    L PS+  Y  ++Q L K   ++    + E+MV +G+
Sbjct: 432 STFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVEKMVNRGF 491

Query: 344 M 344
           +
Sbjct: 492 V 492



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 78/173 (45%), Gaps = 7/173 (4%)

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y  MI +  K      A+  F  M   G  P+   ++VVI  L        A  F   +K
Sbjct: 149 YMEMIDLAGKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLK 208

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
           D   EP+V  Y  L+  +C AG I     +F +M      PN+ TY+I+I ++    +S 
Sbjct: 209 D-RFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALC---RSG 264

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
            +  A  +  EM+D G  P   TFN   N + +    G  +++L++ ++  RL
Sbjct: 265 QITRAHDVFSEMIDVGCDPNAITFN---NLMRVHVKAGRTEKVLQVYNQMKRL 314


>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 580

 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 122/401 (30%), Positives = 186/401 (46%), Gaps = 26/401 (6%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGK--ADRAVKIF 161
           +S  + +  A+ +R+        H     S  P    F     R+   G   A  A+  F
Sbjct: 2   ASTSNTVPSASSIRNSNLSSLFTHSSAIPSPNPQIAFFL----RHCKTGNVTATHALHFF 57

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLV 220
             M       SL+SFN +L  L K K   + ++L+   R     +D  + N++ N  C V
Sbjct: 58  HLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNV 117

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
            R  +       ++ RG +PN+ TYN ++KG     +I EA R FL M+K  C  DVVTY
Sbjct: 118 NRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTY 177

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNG------GVLPSVATYNAMIQVLCKKDSVENAILV 334
            T++ G    G I  A  +   M+N          P+V TYN ++  LCK    + A  +
Sbjct: 178 GTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQL 237

Query: 335 FEEMVGKGYMPNS----------TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
           FEEM  +G +PN            T+NV+I  LC  G++  A + +G M +    P++ T
Sbjct: 238 FEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVT 297

Query: 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLI 444
           YN LI  FC  G++    ELF  M S  C P++ +YN+LI+      K ++   A KL  
Sbjct: 298 YNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEE---AMKLYN 354

Query: 445 EMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
           EM+  G  P   T++ +L G+ L G    AK++  +    G
Sbjct: 355 EMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHG 395



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 108/390 (27%), Positives = 189/390 (48%), Gaps = 36/390 (9%)

Query: 83  ALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           A  ALHFF+++    T   S SSF+H +   A+++ Y  V++L ++M+   L   + T  
Sbjct: 50  ATHALHFFHLM-MRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLN 108

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRG 201
           I+     +  +       F  +   G   ++ ++NT++  LC E ++ +A  LF ++ + 
Sbjct: 109 ILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKL 168

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR------GLNPNLTTYNIVLKGYFRA 255
               DV++Y  +  G C     N AL++ +EM++          PN+ TYNI++ G  + 
Sbjct: 169 GCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKV 228

Query: 256 GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
           G+ +EA + F EMK +                G++          + M++ G+ P + T+
Sbjct: 229 GREDEAKQLFEEMKTQ----------------GMIP---------NEMLDQGLQPDMVTF 263

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           N +I  LCK+  V  A  +   M+  G +P+  TYN +I G C  G++  A E    M  
Sbjct: 264 NVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPS 323

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
             CEP+V +YN+LI  +    ++E  ++L+ +M      PN+ TY+ L+  +F+  K DD
Sbjct: 324 KGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDD 383

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
              A KL   M   G     +T+   L+GL
Sbjct: 384 ---AKKLFSVMKAHGIAENSYTYGIFLDGL 410



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 165/329 (50%), Gaps = 2/329 (0%)

Query: 111 DLAARL-RDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           D A +L  + +T   + + M    L P   TF ++ +     GK   A K+   M E G 
Sbjct: 232 DEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGI 291

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALE 228
              L ++N++++  C    +  A  LF     K  + DVISYNV+ NG+    +  +A++
Sbjct: 292 VPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMK 351

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           +  EM+  G  PN+ TY+ +LKG F AG++++A + F  MK      +  TY   + G  
Sbjct: 352 LYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLC 411

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
               +  A  +F  + +      +   N +I  LCK   +E A  +FE++  +G+ PN  
Sbjct: 412 KNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVV 471

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           TY ++I G C  G++++A   + +M+ + C P++ TYN L+R F ++ ++E  ++L  +M
Sbjct: 472 TYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRM 531

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLL 437
                 P+  T +I++  +   +K  + L
Sbjct: 532 AQKDVSPDAITCSIVVDMLSKDEKYQECL 560



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 111/241 (46%), Gaps = 13/241 (5%)

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
           A  FF  M +      + ++  ++ G   +    +  ++++ M   G+     T N ++ 
Sbjct: 53  ALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLN 112

Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
            LC  + +      F  ++ +GY PN  TYN +I+GLC    +  A     RM+   C P
Sbjct: 113 CLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTP 172

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGV------CLPNLDTYNILISSMFVRKKSD 434
           +V TY  LI+  C  G I   L+L ++M + +      C PN+ TYNI++  +    + D
Sbjct: 173 DVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGRED 232

Query: 435 -------DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
                  ++   G +  EM+D+G  P   TFN +++ L   G    AK++L +    G +
Sbjct: 233 EAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIV 292

Query: 488 P 488
           P
Sbjct: 293 P 293



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 131/305 (42%), Gaps = 38/305 (12%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  ID   +         L+  M    + P   T+  + E +   G  + A ++F+SM
Sbjct: 262 TFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSM 321

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKR 222
              GC   + S+N +++   K  KVE+A  L+   +  GK + +VI+Y+ +  G  L  +
Sbjct: 322 PSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGK-RPNVITYDSLLKGIFLAGK 380

Query: 223 TNKALEVLKEMVDRGLNPNLTTY-----------------------------------NI 247
            + A ++   M   G+  N  TY                                   N 
Sbjct: 381 VDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNC 440

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ G  +AG++E AW  F ++     E +VVTYT ++HGF   G++ +A  +   M   G
Sbjct: 441 LIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANG 500

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
             P + TYN +++   + + +E  + +   M  K   P++ T ++V+  L    + +  L
Sbjct: 501 CTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQECL 560

Query: 368 EFVGR 372
             + R
Sbjct: 561 HLLPR 565


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 178/368 (48%), Gaps = 4/368 (1%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
            + L ++ +S +  PT   F  + +  V++G+ +RA  ++  + + GC+    ++N ++ 
Sbjct: 49  AFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIR 108

Query: 182 LLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
              +  +++ A  +F+  + K  + D  +Y  + N      R  +A      M++RGL P
Sbjct: 109 YFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTP 168

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           N+ TYN+++  + + GQ++ A   F EMK+R  +  VVTY  ++      G +  AR +F
Sbjct: 169 NIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLF 228

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
             M   G  P   TY+ ++  L K   VE A  VF EMV +G   +   YN ++  L   
Sbjct: 229 HKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKA 288

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
           G M+R  + +  M      P+  ++N ++     A + +   E+F +M    C P+L +Y
Sbjct: 289 GNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISY 348

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           NILI S     +  D   A ++L EMV+ GF+P   T+N +++ L   G    A  +L  
Sbjct: 349 NILIDSY---ARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEE 405

Query: 481 QSRCGRLP 488
               G  P
Sbjct: 406 METAGCRP 413



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 161/332 (48%), Gaps = 4/332 (1%)

Query: 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH 167
           +A+  A R+++ R+ +     M    L P   T+ ++ + +   G+ D A+ +F  M   
Sbjct: 143 NALGKAGRVQEARSFFDA---MLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRR 199

Query: 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF-KADVISYNVIANGWCLVKRTNKA 226
           G + S+ ++N +LD LC   +V  A  LF    G     D  +Y+ + NG     R  +A
Sbjct: 200 GFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEA 259

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
            +V +EMVDRG+  +L  YN +L    +AG ++  W+   EM ++    D  ++ TI+  
Sbjct: 260 HKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDA 319

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
            G   +   AR VF  MV  G  P + +YN +I    +      A  + EEMV  G++P 
Sbjct: 320 LGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPE 379

Query: 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
           + TYN +I  L   G+++ A   +  M+   C P+V TYN L+      GE +R   LF+
Sbjct: 380 TKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQ 439

Query: 407 KMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
           +M      P+  +Y + I  +    + D+ LV
Sbjct: 440 QMKDKGVEPDTLSYAVRIDGLAFDDRLDEALV 471



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/405 (25%), Positives = 201/405 (49%), Gaps = 11/405 (2%)

Query: 80  WNHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPT 137
           +    K+   F++ +   ++A SP+  +F   ID+     ++     +  ++        
Sbjct: 40  YGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLD 99

Query: 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK 197
           +  + ++   +  +G+ D A+++F  M   G      ++  +++ L K  +V++A + F 
Sbjct: 100 RFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFD 159

Query: 198 VF--RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
               RG    ++ +YN++ + +  V + + AL +  EM  RG  P++ TYNI+L     A
Sbjct: 160 AMLERG-LTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSA 218

Query: 256 GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
           G++  A + F +M    C  D  TY+T+V+G G  G ++ A  VF  MV+ GV   +  Y
Sbjct: 219 GRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNY 278

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           N+++  L K  +++    + +EM  KG+ P++ ++N ++  L    + + A E   RM +
Sbjct: 279 NSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVE 338

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
             C+P++ +YNILI  +   G+  +  ++ E+M     +P   TYN LI  +    + D+
Sbjct: 339 SGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDE 398

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
              A  +L EM   G  P   T+NR+++   ++G +G  +   RL
Sbjct: 399 ---AFAVLEEMETAGCRPDVVTYNRLMD---MLGKRGENQRAARL 437



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 132/276 (47%), Gaps = 1/276 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L H+M      P   T++ +      +G+ + A K+F  M + G    L ++N++L  L 
Sbjct: 227 LFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLA 286

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K   +++ + L K + R  F  D  S+N I +      + + A EV   MV+ G  P+L 
Sbjct: 287 KAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLI 346

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           +YNI++  Y R G   +A +   EM +     +  TY +++H     G++  A  V + M
Sbjct: 347 SYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEM 406

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G  P V TYN ++ +L K+   + A  +F++M  KG  P++ +Y V I GL     +
Sbjct: 407 ETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRL 466

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
           + AL     MK   C  +   Y ILIR    AG+ E
Sbjct: 467 DEALVLFKDMKAVGCPVDKAMYRILIRAAHRAGDTE 502



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 128/272 (47%), Gaps = 3/272 (1%)

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
           ++  A ++  +      +P +  +  ++     +G+ E A   + ++ ++ C++D   Y 
Sbjct: 45  KSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYN 104

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
            ++  FG  G++  A  +F  M   G  P   TY  ++  L K   V+ A   F+ M+ +
Sbjct: 105 VLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLER 164

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
           G  PN  TYN+++      G+++ AL     MK    +P+V TYNIL+   C AG +   
Sbjct: 165 GLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAA 224

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
            +LF KM    C P+  TY+ L++ +    KS  +  A K+  EMVDRG       +N +
Sbjct: 225 RKLFHKMTGDGCSPDSYTYSTLVNGL---GKSGRVEEAHKVFREMVDRGVAVDLVNYNSL 281

Query: 462 LNGLLLIGNQGLAKEILRLQSRCGRLPRQFKL 493
           L  L   GN     ++++  SR G  P  F  
Sbjct: 282 LATLAKAGNMDRVWKLMKEMSRKGFHPDAFSF 313



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 122/253 (48%), Gaps = 7/253 (2%)

Query: 229 VLKEMVDRG--LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
           +LKEMV  G  L PN  T   ++  Y R  +  +A+  F + +   C   V  +T ++  
Sbjct: 17  LLKEMVAEGRPLRPN--TLVKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDI 74

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
               GE +RA  V+  +V  G       YN +I+   +   +++A+ +F EM  KG  P+
Sbjct: 75  LVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPD 134

Query: 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
             TY  ++  L   G ++ A  F   M +    PN+ TYN+L+  F   G+++  L LF 
Sbjct: 135 EYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFA 194

Query: 407 KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
           +M      P++ TYNIL+ ++    +   +  A KL  +M   G  P  +T++ ++NGL 
Sbjct: 195 EMKRRGFQPSVVTYNILLDALCSAGR---VGAARKLFHKMTGDGCSPDSYTYSTLVNGLG 251

Query: 467 LIGNQGLAKEILR 479
             G    A ++ R
Sbjct: 252 KSGRVEEAHKVFR 264



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 1/156 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S++  ID  AR  D      ++  M      P  KT+  +     + G+ D A  +   M
Sbjct: 347 SYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEM 406

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
              GCR  + ++N ++D+L K  + ++A  LF+  + K  + D +SY V  +G     R 
Sbjct: 407 ETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRL 466

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
           ++AL + K+M   G   +   Y I+++   RAG  E
Sbjct: 467 DEALVLFKDMKAVGCPVDKAMYRILIRAAHRAGDTE 502


>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Brachypodium distachyon]
          Length = 554

 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 161/341 (47%), Gaps = 8/341 (2%)

Query: 94  SYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGK 153
           S  PT      +F+  I    R RD   V  L   M  + + P   T+  + + +   G+
Sbjct: 215 SVQPTVV----TFNTLISGMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGR 270

Query: 154 ADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNV 212
            + AVK+F  M + G   +   F T++D  CKE  V    +L++  R +    D+++YN 
Sbjct: 271 MENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNA 330

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           + NG C  +    A  +++EM + GL P+  TY  ++ G  + G+++ A     +M +++
Sbjct: 331 LVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKE 390

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
             +D VTYT ++ G    G    A  V   M+   + P   TY  +I   C+K  V+   
Sbjct: 391 VSLDEVTYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGF 450

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
            + +EM  KG  P   TYNV++ GLC  G+M+ A   +  M +    P+  TYNIL+   
Sbjct: 451 KLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAMLNIGVSPDDITYNILLDGQ 510

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
           C  G++    EL    G    +P+   Y  LIS +  +K +
Sbjct: 511 CKHGKVANSEELESSKG---MVPDFAVYTSLISELAKKKPA 548



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 179/378 (47%), Gaps = 8/378 (2%)

Query: 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ 171
           L +RL      +T   ++    + P  + F ++   +V  G+   A K+F  M     + 
Sbjct: 160 LMSRLPSTPEAYTFYLQLLDAGMAPETRLFNVLMRDFVRLGELVSARKVFDEMR-RSVQP 218

Query: 172 SLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVL 230
           ++ +FNT++  +C+ + ++    L+K       K DV +Y  +  G+C   R   A+++ 
Sbjct: 219 TVVTFNTLISGMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMF 278

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
            EM D G+NPN   +  ++  + + G +      + +M+ R    D+V Y  +V+G    
Sbjct: 279 NEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRA 338

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
             +K A ++ + M N G+ P   TY  +I   CK   ++ A+ + ++M  K    +  TY
Sbjct: 339 RNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTY 398

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
             +I GL   G    A   +  M +   EP+  TY ++I  FC  G+++ G +L ++M +
Sbjct: 399 TALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQN 458

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
               P + TYN++++ +    K   +  A  LL  M++ G  P   T+N +L+G    G 
Sbjct: 459 KGKKPGVVTYNVIMNGLC---KLGQMKNADMLLHAMLNIGVSPDDITYNILLDGQCKHGK 515

Query: 471 QGLAKEILRLQSRCGRLP 488
              ++E   L+S  G +P
Sbjct: 516 VANSEE---LESSKGMVP 530


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 170/357 (47%), Gaps = 7/357 (1%)

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
            L P  K F ++    V  G+   A  +F  M   G R+++ SFNT++  +C+   ++ A
Sbjct: 111 GLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGA 170

Query: 193 YNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
             L + +       DV +Y  +  G C V R   A  V ++M  RG+ PN   + I++  
Sbjct: 171 ETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDA 230

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
           + + G  E       EM++R    D VTY  IV+G     ++K A  +   M + G+ P 
Sbjct: 231 HCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPD 290

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
             TY  +I   CK++ ++ A+ + + MV +G   +  TY  +I GL   G    A   +G
Sbjct: 291 TVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLG 350

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
            M +   EP+  TY ++I  FC  G+++ GL L ++M +    P + TYN++++      
Sbjct: 351 EMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFC--- 407

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           K   +  A  LL  M++ G  P   T+N +L+G       G   +I  L+S  G +P
Sbjct: 408 KLGQMKNADMLLNAMINIGVSPDDITYNILLDGHC---KHGKVTDIEELKSAKGTVP 461



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 124/251 (49%), Gaps = 4/251 (1%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            R+ D R V+    +M    + P    F I+ + +   G A+  +++   M E G R   
Sbjct: 200 GRIEDARGVF---EKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDA 256

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
            ++N I++ LC+ + ++ A  +    R    + D ++Y  + +G+C  +  + A+E+ + 
Sbjct: 257 VTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQN 316

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           MV  G+  +  TY  ++ G  +AG+  +A R   EM +   E D  TYT ++  F   G+
Sbjct: 317 MVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGD 376

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           +K    +   M N G  P V TYN ++   CK   ++NA ++   M+  G  P+  TYN+
Sbjct: 377 VKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNI 436

Query: 353 VIRGLCHTGEM 363
           ++ G C  G++
Sbjct: 437 LLDGHCKHGKV 447



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 124/247 (50%), Gaps = 3/247 (1%)

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
           +++D GL P    +N++++   R G++  A   F EM+ R     VV++ T++ G    G
Sbjct: 106 QLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAG 165

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
           ++  A  +   M   GV P V TY A+IQ LC+   +E+A  VFE+M G+G  PN+  + 
Sbjct: 166 DLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFT 225

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
           ++I   C  G+ E  LE    M++    P+  TYN ++   C A +++    +  +M S 
Sbjct: 226 ILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSA 285

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
              P+  TY  LI       K ++L +A ++   MV  G    + T+  +++GL   G  
Sbjct: 286 GLRPDTVTYTTLIDGYC---KEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRS 342

Query: 472 GLAKEIL 478
             A+ +L
Sbjct: 343 ADAERVL 349



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 3/205 (1%)

Query: 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319
           EA  F+L++       +   +  ++     +GE+  A+NVFD M + GV  +V ++N MI
Sbjct: 99  EACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMI 158

Query: 320 QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
             +C+   ++ A  +   M   G  P+  TY  +I+GLC  G +E A     +M     +
Sbjct: 159 SGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMK 218

Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA 439
           PN   + ILI   C  G+ E  LEL  +M      P+  TYN +++ +    ++ DL  A
Sbjct: 219 PNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLC---RARDLKSA 275

Query: 440 GKLLIEMVDRGFMPRKFTFNRVLNG 464
             +++EM   G  P   T+  +++G
Sbjct: 276 SGIVVEMRSAGLRPDTVTYTTLIDG 300


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 112/411 (27%), Positives = 190/411 (46%), Gaps = 42/411 (10%)

Query: 117 RDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG--CRQSLN 174
           R    V  L+HRM  L   P   ++  + +      ++  A+ +   M + G  C   + 
Sbjct: 206 RTDEAVDVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVV 265

Query: 175 SFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           SFNT++    K+ +V KA NL  ++ +   + DV++YN I +  C  +  +KA  VL++M
Sbjct: 266 SFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQM 325

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM------------------------K 269
           VD+G+ P+  TY  ++ GY  +G  +E+ + F +M                         
Sbjct: 326 VDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRS 385

Query: 270 KRKCEI-----------DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           K   EI           D+V+Y+ ++HG+   G      N+F  M + G++ +   +N +
Sbjct: 386 KDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNIL 445

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           I    K+  ++ A+LVF EM G+G  P+  TY+ +I   C  G +  A+E   +M     
Sbjct: 446 ISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGL 505

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELF-EKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
           EPN   Y+ LI  FC  G++ +  EL  E M  G+  PN+  ++ +I S+    +  D  
Sbjct: 506 EPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAH 565

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
               L+I + DR   P   TFN +++G  L+G    A  +L      G  P
Sbjct: 566 DVFNLVIHIGDR---PTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEP 613



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 173/333 (51%), Gaps = 9/333 (2%)

Query: 151 AGKADRAVKIFLS-MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR---GKFKAD 206
           A + D AV + L  M + GC  +  S+NT++  LC + + ++A ++ +      G+   D
Sbjct: 204 AKRTDEAVDVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPD 263

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           V+S+N + +G+      +KA  ++ EMV +G+ P++ TYN ++    +A  +++A     
Sbjct: 264 VVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLR 323

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           +M  +  E D +TYT I+HG+   G  K +  +F  M + G++P + T+N+ +  LCK  
Sbjct: 324 QMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHG 383

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
             ++A  +F+ M  KG+MP+  +Y++++ G    G           M D     N   +N
Sbjct: 384 RSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFN 443

Query: 387 ILIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           ILI      G ++  + +F +M G GV  P++ TY+ LIS+ F R     L  A +   +
Sbjct: 444 ILISAHAKRGMMDEAMLVFTEMQGQGV-RPDVVTYSTLISA-FCRMGR--LADAMEKFSQ 499

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           M+  G  P    ++ +++G  + G+   AKE++
Sbjct: 500 MISIGLEPNTVVYHSLIHGFCMHGDLVKAKELV 532



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 178/376 (47%), Gaps = 5/376 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  +D   + R       ++ +M    + P   T+  I   Y  +G    + K+F  M
Sbjct: 301 TYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKM 360

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
              G    + +FN+ +  LCK  + + A  +F+    K    D++SY+++ +G+    R 
Sbjct: 361 TSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRF 420

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
                +   M D+G+  N   +NI++  + + G ++EA   F EM+ +    DVVTY+T+
Sbjct: 421 ADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTL 480

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +  F  +G +  A   F  M++ G+ P+   Y+++I   C    +  A  +  EM+ KG 
Sbjct: 481 ISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGI 540

Query: 344 -MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
             PN   ++ +I  LC+ G +  A +    +      P + T+N LI  +C  G++E+  
Sbjct: 541 PRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAF 600

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
            + + M S    P++ TYN L+S      K DD L+   L  EM+ +   P   T++ VL
Sbjct: 601 GVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLI---LFREMLHKKVKPTTVTYSIVL 657

Query: 463 NGLLLIGNQGLAKEIL 478
           +GL   G    AK++ 
Sbjct: 658 DGLFHAGRTSAAKKMF 673



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 152/315 (48%), Gaps = 5/315 (1%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC-RQSLNSFNTILDLLCKE 186
           +M S+ L P    +  +   +   G   +A ++   M   G  R ++  F++I+  LC E
Sbjct: 499 QMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNE 558

Query: 187 KKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
            +V  A+++F  V     +  ++++N + +G+CLV +  KA  VL  MV  G+ P++ TY
Sbjct: 559 GRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTY 618

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           N ++ GY ++G+I++    F EM  +K +   VTY+ ++ G    G    A+ +F  M++
Sbjct: 619 NTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMID 678

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G    + TY  +++ LC+ D  + AI +F ++       + T  N VI  L      E 
Sbjct: 679 SGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVINALYKVRRREE 738

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           A +    +      PNV TY ++I      G +E    +F  M    C P+    N +I 
Sbjct: 739 ANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDII- 797

Query: 426 SMFVRKKSDDLLVAG 440
            M ++K   D++ AG
Sbjct: 798 RMLLQK--GDIVKAG 810



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 146/297 (49%), Gaps = 8/297 (2%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLG--PTQKTFAIIAERYVSAGKADRAVKIF 161
           SS  H++    R+ D   V+ LV     + +G  PT  TF  + + Y   GK ++A  + 
Sbjct: 549 SSIIHSLCNEGRVMDAHDVFNLV-----IHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVL 603

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLV 220
            +M   G    + ++NT++   CK  K++    LF+ +   K K   ++Y+++ +G    
Sbjct: 604 DAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHA 663

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
            RT+ A ++  EM+D G   ++ TY I+LKG  R    +EA   F ++    C+ D+   
Sbjct: 664 GRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITIL 723

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
            T+++    V   + A ++F  +   G++P+V+TY  MI  L K+ SVE A  +F  M  
Sbjct: 724 NTVINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEK 783

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
            G  P+S   N +IR L   G++ +A  ++ ++          T ++L+  F   G+
Sbjct: 784 SGCAPSSRLLNDIIRMLLQKGDIVKAGYYMSKVDGTIISLEASTTSLLMSLFSSKGK 840



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 102/215 (47%), Gaps = 13/215 (6%)

Query: 284 VHGFGVVGEIK-RARN------VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI-LVF 335
           VH +G++ +   RAR        F  ++  G+       N  ++ LC     + A+ ++ 
Sbjct: 156 VHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTRTIEANTFLKCLCHAKRTDEAVDVLL 215

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD--ECEPNVQTYNILIRYFC 393
             M   G +PN+ +YN VI+ LC     + AL+ V RM  +   C P+V ++N +I  F 
Sbjct: 216 HRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFF 275

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
             GE+ +   L  +M      P++ TYN ++ ++   +  D    A  +L +MVD+G  P
Sbjct: 276 KQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDK---AELVLRQMVDKGVEP 332

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
              T+  +++G    G+   + ++ R  +  G +P
Sbjct: 333 DGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIP 367


>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic-like [Glycine max]
          Length = 1113

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 180/336 (53%), Gaps = 6/336 (1%)

Query: 130  KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV 189
            KSL   PT +++  + +  +     + A+K+F+ M   GC  ++ ++N +LD   K K++
Sbjct: 780  KSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRI 839

Query: 190  EKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
            ++ + L+   + RG  K ++I++N+I +        NKAL++  E++    +P   TY  
Sbjct: 840  DELFELYNEMLCRG-CKPNIITHNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGP 898

Query: 248  VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
            ++ G  +AG+ EEA + F EM   +C+ +   Y  +++GFG  G +  A ++F  M+  G
Sbjct: 899  LIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEG 958

Query: 308  VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
            + P + +Y  +++ L     V++A+  FEE+   G  P++ +YN++I GL  +  +E AL
Sbjct: 959  IRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEAL 1018

Query: 368  EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
                 MK+    P + TYN LI +F +AG +++  ++FE++      PN+ TYN LI   
Sbjct: 1019 SLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIRG- 1077

Query: 428  FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
                KS +   A  +  +M+  G  P   TF ++ N
Sbjct: 1078 --HSKSGNKDRAFSVFKKMMIVGCSPNAGTFAQLPN 1111



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 177/388 (45%), Gaps = 39/388 (10%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            R RD  T+  L+  M++L L P   T+ I       AG+ D A  I  +M + GC   +
Sbjct: 238 GRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDV 297

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGK------------------------------- 202
            ++  ++D LC   K++KA  L+   R                                 
Sbjct: 298 VTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRFWSE 357

Query: 203 -----FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
                +  DV++Y ++    C   + ++A ++L  M  RG+ PNL TYN ++ G     +
Sbjct: 358 MEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRR 417

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           ++EA   F  M+         +Y   +  +G +G+ ++A + F+ M   G++PS+A  NA
Sbjct: 418 LDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNA 477

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
            +  L +   +  A  +F ++   G  P+S TYN++++     G++++A + +  M  + 
Sbjct: 478 SLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEG 537

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
           CEP++   N LI     AG ++   ++F ++      P + TYNILI+ +    K   LL
Sbjct: 538 CEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGL---GKEGKLL 594

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            A  L   M + G  P   TFN +L+ L
Sbjct: 595 KALDLFGSMKESGCPPNTVTFNALLDCL 622



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/413 (22%), Positives = 188/413 (45%), Gaps = 39/413 (9%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAID---LAARLRDYRTVWTLVHR-------------M 129
           AL +F ++S  P   H+P + ++ ++   +  R+ D   V+ L+ +              
Sbjct: 105 ALSYFKMVSQLPNIVHTPETCNYMLEFLRVHGRVEDMAFVFDLMQKQVINRNPNTYLTIF 164

Query: 130 KSLSL--GPTQKTFAIIAER-----------------YVSAGKADRAVKIFLSMHEHGCR 170
           K+LS+  G  Q  FA+   R                  +  G    A+K++  M   G +
Sbjct: 165 KALSIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIYFLLQPGFCKEALKVYKRMISEGLK 224

Query: 171 QSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEV 229
            S+ +++ ++  L + +      +L +       + ++ +Y +         R + A  +
Sbjct: 225 PSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGI 284

Query: 230 LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289
           LK M D G  P++ TY +++     AG++++A   + +M+    + D+VTY T++  FG 
Sbjct: 285 LKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGN 344

Query: 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
            G+++  +  +  M   G  P V TY  +++ LCK   V+ A  + + M  +G +PN  T
Sbjct: 345 YGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHT 404

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
           YN +I GL +   ++ ALE    M+     P   +Y + I Y+   G+ E+ L+ FEKM 
Sbjct: 405 YNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMK 464

Query: 410 SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
               +P++   N   +S++   +   +  A  +  ++ + G  P   T+N ++
Sbjct: 465 KRGIMPSIAACN---ASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMM 514



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 149/301 (49%), Gaps = 2/301 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  I     LR       L + M+SL + PT  ++ +  + Y   G  ++A+  F  M
Sbjct: 404 TYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKM 463

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRT 223
            + G   S+ + N  L  L +  ++ +A ++F  +       D ++YN++   +    + 
Sbjct: 464 KKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQI 523

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           +KA ++L EM+  G  P++   N ++   ++AG+++EAW+ F  +K  K    VVTY  +
Sbjct: 524 DKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNIL 583

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G G  G++ +A ++F  M   G  P+  T+NA++  LCK D+V+ A+ +F  M     
Sbjct: 584 ITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNC 643

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+  TYN +I GL   G    A  F  +MK      +V  Y +L     D G +E  ++
Sbjct: 644 SPDVLTYNTIIYGLIKEGRAGYAFWFYHQMKKFLSPDHVTLYTLLPGVVKD-GRVEDAIK 702

Query: 404 L 404
           +
Sbjct: 703 I 703



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 101/423 (23%), Positives = 175/423 (41%), Gaps = 71/423 (16%)

Query: 127  HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS-MHEHG----------------- 168
            H+MK   L P   T   +    V  G+ + A+KI +  +H+ G                 
Sbjct: 671  HQMKKF-LSPDHVTLYTLLPGVVKDGRVEDAIKIVMEFVHQSGLQTSNQVWGELMECILI 729

Query: 169  ---------------CRQSLNSFNTILDL---LCKEKKVEKAYNLFKVFRGKFKADVI-- 208
                           C       N IL L   LCK+KK   A  LF  F           
Sbjct: 730  EAEIEEAISFAEGLVCNSICQDDNLILPLIRVLCKQKKALDAKKLFDKFTKSLGTHPTPE 789

Query: 209  SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
            SYN + +G      T  AL++  EM + G  PN+ TYN++L  + ++ +I+E +  + EM
Sbjct: 790  SYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEM 849

Query: 269  KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
              R C+ +++T+  I+        I +A +++  +++G   P+  TY  +I  L K    
Sbjct: 850  LCRGCKPNIITHNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRS 909

Query: 329  ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
            E A+ +FEEM      PN   YN++I G    G +  A +   RM  +   P++++Y IL
Sbjct: 910  EEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTIL 969

Query: 389  IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV---------- 438
            +      G ++  +  FE++      P+  +YN++I+ +   ++ ++ L           
Sbjct: 970  VECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGI 1029

Query: 439  ----------------------AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKE 476
                                  AGK+  E+   G  P  FT+N ++ G    GN+  A  
Sbjct: 1030 SPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFS 1089

Query: 477  ILR 479
            + +
Sbjct: 1090 VFK 1092



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 142/327 (43%), Gaps = 36/327 (11%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177
           D  TV      M++    P   T+ I+ E    +GK D+A  +   M   G   +L+++N
Sbjct: 347 DLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYN 406

Query: 178 TILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
           T++  L   +++++A  LF        A    SY +  + +  +    KAL+  ++M  R
Sbjct: 407 TLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKR 466

Query: 237 G-----------------------------------LNPNLTTYNIVLKGYFRAGQIEEA 261
           G                                   L+P+  TYN+++K Y +AGQI++A
Sbjct: 467 GIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKA 526

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
            +   EM    CE D++   +++      G +  A  +F  + +  + P+V TYN +I  
Sbjct: 527 TKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITG 586

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           L K+  +  A+ +F  M   G  PN+ T+N ++  LC    ++ AL+   RM    C P+
Sbjct: 587 LGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPD 646

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKM 408
           V TYN +I      G        + +M
Sbjct: 647 VLTYNTIIYGLIKEGRAGYAFWFYHQM 673



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 132/251 (52%), Gaps = 3/251 (1%)

Query: 103  PSSFDHAIDLAARLRD--YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
            P+   H I ++A ++         L + + S    PT  T+  +    + AG+++ A+KI
Sbjct: 856  PNIITHNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKI 915

Query: 161  FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCL 219
            F  M ++ C+ +   +N +++   K   V  A +LFK + +   + D+ SY ++     +
Sbjct: 916  FEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFM 975

Query: 220  VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
              R + A+   +E+   GL+P+  +YN+++ G  ++ ++EEA   F EMK R    ++ T
Sbjct: 976  TGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYT 1035

Query: 280  YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
            Y  ++  FG  G + +A  +F+ +   G+ P+V TYNA+I+   K  + + A  VF++M+
Sbjct: 1036 YNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMM 1095

Query: 340  GKGYMPNSTTY 350
              G  PN+ T+
Sbjct: 1096 IVGCSPNAGTF 1106



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 100/450 (22%), Positives = 167/450 (37%), Gaps = 110/450 (24%)

Query: 123  WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD- 181
            W +  R+K L L PT  T+ I+       GK  +A+ +F SM E GC  +  +FN +LD 
Sbjct: 562  WQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDC 621

Query: 182  ----------------------------------LLCKEKKVEKAYNLFKVFRGKFKADV 207
                                               L KE +   A+  +   +     D 
Sbjct: 622  LCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAFWFYHQMKKFLSPDH 681

Query: 208  ISYNVIANGWCLVKRTNKALEVLKEMVDR-GLNPNLTTYNIVLKGYFRAGQIEEAWRF-- 264
            ++   +  G     R   A++++ E V + GL  +   +  +++      +IEEA  F  
Sbjct: 682  VTLYTLLPGVVKDGRVEDAIKIVMEFVHQSGLQTSNQVWGELMECILIEAEIEEAISFAE 741

Query: 265  -----------------FLEMKKRKCEIDV-----------------VTYTTIVHGFGVV 290
                                + K+K  +D                   +Y  ++ G    
Sbjct: 742  GLVCNSICQDDNLILPLIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGC 801

Query: 291  GEIKRARNVFDGMVNGGVLPSVATYNAM-------------------------------- 318
               + A  +F  M N G  P++ TYN +                                
Sbjct: 802  NITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITH 861

Query: 319  ---IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
               I  L K +S+  A+ ++ E++   + P   TY  +I GL   G  E A++    M D
Sbjct: 862  NIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPD 921

Query: 376  DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
             +C+PN   YNILI  F  AG +    +LF++M      P+L +Y IL+  +F+  + DD
Sbjct: 922  YQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDD 981

Query: 436  LLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
               A     E+   G  P   ++N ++NGL
Sbjct: 982  ---AVHYFEELKLTGLDPDTVSYNLMINGL 1008



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 135/293 (46%), Gaps = 36/293 (12%)

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
           K++++R  NPN  TY  + K     G I +A     +M++    ++  +Y  +++     
Sbjct: 150 KQVINR--NPN--TYLTIFKALSIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIYFLLQP 205

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           G  K A  V+  M++ G+ PS+ TY+A++  L ++      + + EEM   G  PN  TY
Sbjct: 206 GFCKEALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTY 265

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
            + IR L   G ++ A   +  M+D+ C P+V TY +LI   C AG++++  EL+ KM +
Sbjct: 266 TICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRA 325

Query: 411 GVCLPNLDTYNILISSM-----------FVRKKSDD---------------LLVAGKL-- 442
               P+L TY  L+S             F  +   D               L  +GK+  
Sbjct: 326 SSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQ 385

Query: 443 LIEMVD----RGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
             +M+D    RG +P   T+N +++GLL +     A E+       G  P  +
Sbjct: 386 AFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAY 438



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 94/226 (41%), Gaps = 36/226 (15%)

Query: 92   ILSYHPTYAHSPSS--FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149
            I    P Y   P+   ++  I+   +  +      L  RM    + P  K++ I+ E   
Sbjct: 915  IFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLF 974

Query: 150  SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVIS 209
              G+ D AV  F  +   G      S+N +++ L K +++E+A +LF             
Sbjct: 975  MTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLF------------- 1021

Query: 210  YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
                                  EM +RG++P L TYN ++  +  AG +++A + F E++
Sbjct: 1022 ---------------------SEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQ 1060

Query: 270  KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
                E +V TY  ++ G    G   RA +VF  M+  G  P+  T+
Sbjct: 1061 FMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPNAGTF 1106


>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 646

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 190/382 (49%), Gaps = 8/382 (2%)

Query: 98  TYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRA 157
           +Y    ++F   I+  A  R++  +  ++ RMK      T+  F +I +    A     A
Sbjct: 60  SYKLGDATFYRLIENYATSREFHFIHQVLDRMKREGRVLTETIFILIFKACGKAHLPGEA 119

Query: 158 VKIFLSM-HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGK---FKADVISYNV 212
           V  F  M ++  C+Q++ SFN++L+++ +E     A+  +  VF      F+ ++++YN+
Sbjct: 120 VNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNL 179

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           I    C + + ++A++  +EM  +  NP++ TY+ ++ G  +  +++EA     EM+   
Sbjct: 180 IIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEG 239

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
           C  + VT+  ++      G++ RA  + D M   G +P+  TYN +I  LC K  ++ A+
Sbjct: 240 CLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAL 299

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
            + E+MV    +PN  TY  +I GL      E  +  +  M++   + N   Y+ LI   
Sbjct: 300 SLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGL 359

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
              G+ E  + L+++M    C PN+  Y   I  +   +K D+   A  +L EM+ +GF+
Sbjct: 360 FKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDE---AEDILQEMLSKGFL 416

Query: 453 PRKFTFNRVLNGLLLIGNQGLA 474
           P  FT++ ++ G    G+   A
Sbjct: 417 PNAFTYSSLMKGFFKKGDSQKA 438



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 177/344 (51%), Gaps = 6/344 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M++    P   TF ++ +     G   RA K+  +M   GC  +  ++NT++  LC
Sbjct: 231 LLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLC 290

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            + K++KA +L  K+   K   + ++Y  I NG    +R    + +L  M +RG   N  
Sbjct: 291 LKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEY 350

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            Y+ ++ G F+ G+ E A R + EM ++ C+ +VV Y   + G     +   A ++   M
Sbjct: 351 IYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEM 410

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           ++ G LP+  TY+++++   KK   + AILV++EM+ +    N    +V++ GLC +G +
Sbjct: 411 LSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRL 470

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM--GSGVCLPNLDTYN 421
             AL     M  +  +P+V  Y+ +I+  CD G +++GL+LF +M        P++ TYN
Sbjct: 471 REALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYN 530

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           IL +++    + D+L  A  LL  M+D G  P   T N  L  L
Sbjct: 531 ILFNALC---RQDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETL 571



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 168/348 (48%), Gaps = 8/348 (2%)

Query: 127 HRMKS-LSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM---HEHGCRQSLNSFNTILDL 182
           HRM + L    T K+F  +    +  G    A K +L +   +  G + +L ++N I+  
Sbjct: 124 HRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKA 183

Query: 183 LCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           LCK  ++++A + F+    K    DV +Y+ + NG C  +R ++A+ +L EM   G  PN
Sbjct: 184 LCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPN 243

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
             T+N+++    + G +  A +    M  + C  + VTY T++HG  + G++ +A ++ +
Sbjct: 244 PVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLE 303

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            MV+   +P+  TY  +I  L K+   E+ + +   M  +G   N   Y+ +I GL   G
Sbjct: 304 KMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEG 363

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
           + E A+     M +  C+PNV  Y   I   C   + +   ++ ++M S   LPN  TY+
Sbjct: 364 KSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYS 423

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
            L+   F +  S   ++  K   EM+ +         + +LNGL   G
Sbjct: 424 SLMKGFFKKGDSQKAILVWK---EMMSQDMRHNVVCCSVLLNGLCESG 468


>gi|222628664|gb|EEE60796.1| hypothetical protein OsJ_14385 [Oryza sativa Japonica Group]
          Length = 808

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 117/434 (26%), Positives = 208/434 (47%), Gaps = 48/434 (11%)

Query: 101 HSPSS---FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRA 157
           HSP +   ++  ID   R+        +V R+    LGP   ++++I   +V  G+ D+A
Sbjct: 95  HSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYSLIY-GFVKDGEVDKA 153

Query: 158 VKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANG 216
             +FL M E G    +   N+I+  LCK K+++KA ++  K+       D+ +Y++I +G
Sbjct: 154 HCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDG 213

Query: 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK------- 269
            C  K  +KA  VL++MV+ G  PN  TYN ++ GY  +G   E+ R F +M        
Sbjct: 214 LCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPT 273

Query: 270 ------------------KRKC----------EIDVVTYTTIVHGFGVVGE--IKRARNV 299
                             + KC          + D+++Y+T++HG+    +  +    N+
Sbjct: 274 VDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNI 333

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
           F+ M+  G+ P+   +N +I    +   ++ A+L+FE+M  KG +P++ T+  VI  LC 
Sbjct: 334 FNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCR 393

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF-EKMGSGVCLPNLD 418
            G ++ AL     M D    P+   Y  LI+  C+ GE+ +  EL  E M   +  P + 
Sbjct: 394 IGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVK 453

Query: 419 TYNILISSMFVRKKSDDLLVAGKLLIEM-VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
            ++ +I+++    +    +  GK +++M V  G  P   TFN ++ G  L+GN   A  +
Sbjct: 454 YFSSIINNLCKEGR----VAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFAL 509

Query: 478 LRLQSRCGRLPRQF 491
           L   +  G  P  +
Sbjct: 510 LDAMASIGIEPNCY 523



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 110/468 (23%), Positives = 190/468 (40%), Gaps = 89/468 (19%)

Query: 102 SPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           +P  F ++  ID   + +       ++ +M      P   T+  +   Y  +G  + +V+
Sbjct: 201 APDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVR 260

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGW 217
           +F  M   G   ++++ N+ +  L K  +  +A  +F   V +G  K D+ISY+ + +G+
Sbjct: 261 VFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGP-KPDIISYSTMLHGY 319

Query: 218 ------CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
                 CL    N    +   M+ +G+ PN   +NI++  Y R G +++A   F +M+ +
Sbjct: 320 ATATDSCLADVHN----IFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNK 375

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV---------- 321
               D VT+ T++     +G +  A + F+ MV+ GV PS A Y  +IQ           
Sbjct: 376 GMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKA 435

Query: 322 --------------------------LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
                                     LCK+  V     + + MV  G  PN  T+N ++ 
Sbjct: 436 KELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLME 495

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
           G C  G ME A   +  M     EPN   Y  L+  +C  G I+  L +F  M      P
Sbjct: 496 GYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKP 555

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG------------------------- 450
               Y+I++  +F  +++     A K+  EM++ G                         
Sbjct: 556 TSVLYSIILHGLFQARRTT---AAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEAN 612

Query: 451 -------FMPRKF---TFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
                   M  KF   TFN V++ +  +G +  AKE+    S  G +P
Sbjct: 613 MLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVP 660



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 166/354 (46%), Gaps = 10/354 (2%)

Query: 116 LRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS 175
           L D   ++ L   M +  + P +  F I+   Y   G  D+A+ IF  M   G      +
Sbjct: 327 LADVHNIFNL---MLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVT 383

Query: 176 FNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           F T++  LC+  +++ A + F   V  G   ++ + Y  +  G C      KA E++ EM
Sbjct: 384 FATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAV-YGCLIQGCCNHGELVKAKELISEM 442

Query: 234 VDRGL-NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           +++ +  P +  ++ ++    + G++ E       M +     +VVT+ +++ G+ +VG 
Sbjct: 443 MNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGN 502

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           ++ A  + D M + G+ P+   Y  ++   CK   +++A+ VF +M+ KG  P S  Y++
Sbjct: 503 MEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSI 562

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           ++ GL        A +    M +     ++ TY +++   C     +    L EK+ +  
Sbjct: 563 ILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMN 622

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
              ++ T+NI+IS+MF   +  +   A +L   +   G +P   T++ ++  L+
Sbjct: 623 VKFDIITFNIVISAMFKVGRRQE---AKELFDAISTYGLVPNIQTYSMMITNLI 673



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 165/380 (43%), Gaps = 7/380 (1%)

Query: 91  NILSYHPTYAHSPSS--FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERY 148
           NI +   T   +P+   F+  I+  AR         +   M++  + P   TFA +    
Sbjct: 332 NIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSL 391

Query: 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF--KAD 206
              G+ D A+  F  M + G   S   +  ++   C   ++ KA  L      K      
Sbjct: 392 CRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPG 451

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           V  ++ I N  C   R  +  +++  MV  G  PN+ T+N +++GY   G +EEA+    
Sbjct: 452 VKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLD 511

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
            M     E +   Y T+V G+   G I  A  VF  M++ GV P+   Y+ ++  L +  
Sbjct: 512 AMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQAR 571

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
               A  +F EM+  G   +  TY VV+ GLC     + A   + ++     + ++ T+N
Sbjct: 572 RTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFN 631

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
           I+I      G  +   ELF+ + +   +PN+ TY+++I+++   +  ++   A  L I +
Sbjct: 632 IVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEE---ADNLFISV 688

Query: 447 VDRGFMPRKFTFNRVLNGLL 466
              G        N ++  LL
Sbjct: 689 EKSGHASDSRLLNHIVRMLL 708



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 127/265 (47%), Gaps = 1/265 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   TF  + E Y   G  + A  +  +M   G   +   + T++D  CK  +++ A  +
Sbjct: 485 PNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTV 544

Query: 196 FK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F+ +     K   + Y++I +G    +RT  A ++  EM++ G   ++ TY +VL G  R
Sbjct: 545 FRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCR 604

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
               +EA     ++     + D++T+  ++     VG  + A+ +FD +   G++P++ T
Sbjct: 605 NNCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQT 664

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y+ MI  L K++S E A  +F  +   G+  +S   N ++R L +  E+ +A  ++  + 
Sbjct: 665 YSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIVRMLLNKAEVAKASNYLSIIG 724

Query: 375 DDECEPNVQTYNILIRYFCDAGEIE 399
           ++       T ++L   F   G I+
Sbjct: 725 ENNLTLEASTISLLASLFSREGMIK 749


>gi|222641466|gb|EEE69598.1| hypothetical protein OsJ_29150 [Oryza sativa Japonica Group]
          Length = 579

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 122/487 (25%), Positives = 218/487 (44%), Gaps = 27/487 (5%)

Query: 1   MFALLRKPPKNHL----HFFCIYRGLSPLTTTSPAPLPPAAADPAA--------LASLIL 48
           + AL R PP+  L      FC     SP T        PA AD  A        + SL  
Sbjct: 8   LAALRRAPPRPILLLLGRLFCA----SPQTGFGGGDPGPADADTDAGVDVDARLVGSLCR 63

Query: 49  TSTDPRTLTQTLHCP----SLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPS 104
             +D R   Q L       +  + P+    +++R  +  L +L FF      P ++H P 
Sbjct: 64  VLSDFRGRGQDLPAALRGFAPGFQPRDAAAVLRRCRHLPLPSLRFFLFAGELPGFSHHPD 123

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S     +  A  R +  + +L+  +   +L  ++  F ++   Y  A   + A++ F SM
Sbjct: 124 SLLVLANSLAGARLFPLLRSLLSDLPPSAL--SRGLFPLLFRAYSRARLPEDAIRAFSSM 181

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTN 224
              G   ++  F+++L  L +   VE     F+    +F     +Y ++ +GW +VK+  
Sbjct: 182 AGFGFPPTIADFHSLLFALSRNGLVEYGERFFRESTAQFDVSAKAYTILISGWAVVKKPE 241

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI-DVVTYTTI 283
            A  +  EMV RG+  ++  YN ++    R G I  A      M+K    + +  TY   
Sbjct: 242 NARSLFDEMVKRGVELDVHVYNALIDALCRGGDITSAQEQLSNMQKSHGLVPNAATYGPF 301

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +H      +++ A  V D M    + P+V TYNA+I++LC    +  A  + +E+  +G 
Sbjct: 302 LHAACASKDVRAALRVLDRMHTHALTPNVFTYNAVIRLLCDLGEINEAYNILDEITTQGE 361

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+  +YN ++   C   E+ +AL  + RM  + C P+  +YN+L++     G  +  +E
Sbjct: 362 KPDVWSYNTLLNAHCKLKEVNKALRLISRMDKELCPPDRHSYNMLLKMLISVGRFDTAIE 421

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRK-KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           +++ M      P   TY ++I  +  +K +++D   A    + MVD G  P + T   + 
Sbjct: 422 VWDGMEKRGFHPGAATYAVMIHGLASKKGRAED---ACSYFVRMVDEGIPPYQATCEVLR 478

Query: 463 NGLLLIG 469
           + LL++G
Sbjct: 479 DRLLMLG 485


>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 120/409 (29%), Positives = 193/409 (47%), Gaps = 16/409 (3%)

Query: 77  KRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGP 136
           K   + ALK L    ++   P       +F+  I    ++        LV RM      P
Sbjct: 266 KNQVSEALKLLEEMFVMGCMP----DVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYP 321

Query: 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF 196
              T+  +       GK + A KI + +    C  +    NT+++      ++++A +  
Sbjct: 322 DNMTYGFLLHGLCRIGKLNEARKILIKIP---CPNNA-ILNTLINGYVMSGQLKEAQSFL 377

Query: 197 K--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
              +    F+ D+ +YN++ +G C     + A +++ EM  RG  PN+ TY I++ G  +
Sbjct: 378 NETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCK 437

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
           AG +EEA     EM  R   I+ V Y  ++       ++  A N+   M   G  P + T
Sbjct: 438 AGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFT 497

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN++I  LCK D ++ A  +F  M+  G + N+ TYN +I  L   G  ++AL  V  M 
Sbjct: 498 YNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDML 557

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
              C  +  TYN LI+ FC  G IE+GLEL+E+M       +  + NI+I+ +    K D
Sbjct: 558 FRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVD 617

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           +   A + L + ++RGF+P   T+N VLNGL  +G     KE L L  R
Sbjct: 618 N---AFEFLRDAINRGFVPDIVTYNSVLNGLCKVGR---IKEALNLFDR 660



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 111/414 (26%), Positives = 183/414 (44%), Gaps = 39/414 (9%)

Query: 87  LHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAE 146
           L  F  +     Y H+   +   I+    +  ++ +  L+ +MK   +   +  F II +
Sbjct: 96  LEIFERVGGQKGYCHTFDVYYVFINKLGAIGKFKLIDKLLMQMKEEGIVFRESIFMIIMK 155

Query: 147 RYVSAGKADRAVKIFLSMHE-HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FK 204
            Y  AG+  +A+++ L M   + C  +  S++ +L++L      + A N+F     K   
Sbjct: 156 HYGKAGQPGQAIRLLLDMRAVYLCEPTFKSYDLVLEILVTGNCPQVATNVFYDMLSKGVS 215

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
             V ++ ++    C+    + A  +L++M   G  PN   Y  ++    +  Q+ EA + 
Sbjct: 216 PTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKL 275

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
             EM    C  DV T+  ++HG   V +I  A  + D M+  G  P   TY  ++  LC+
Sbjct: 276 LEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCR 335

Query: 325 KDSV-------------ENAIL-------------------VFEEMVGKGYMPNSTTYNV 352
              +              NAIL                   + E M+  G+ P+  TYN+
Sbjct: 336 IGKLNEARKILIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNI 395

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER-GLELFEKMGSG 411
           ++ GLC  G +  A + V  M    CEPNV TY IL+   C AG +E  GL L E    G
Sbjct: 396 LMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARG 455

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           + + N   YN LI ++  ++K     VA  LL EM  +G  P  FT+N ++ GL
Sbjct: 456 LTI-NSVIYNCLICALCRKEKVH---VALNLLSEMCTKGCKPDLFTYNSLIYGL 505



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 110/414 (26%), Positives = 182/414 (43%), Gaps = 38/414 (9%)

Query: 92  ILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149
           +L     Y   P+  S+D  +++       +    + + M S  + PT  TF I+ +   
Sbjct: 170 LLDMRAVYLCEPTFKSYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALC 229

Query: 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVI 208
              + D A  +   M +HGC  +   + T++  L ++ +V +A  L  ++F      DV 
Sbjct: 230 MFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQ 289

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY----------------------- 245
           ++N + +G C V + + A +++  M+ RG  P+  TY                       
Sbjct: 290 TFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKI 349

Query: 246 --------NIVLKGYFRAGQIEEAWRFFLE-MKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
                   N ++ GY  +GQ++EA  F  E M     + D+ TY  ++HG    G +  A
Sbjct: 350 PCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFA 409

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
           R++ + M   G  P+V TY  ++  LCK   +E A LV  EM  +G   NS  YN +I  
Sbjct: 410 RDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICA 469

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
           LC   ++  AL  +  M    C+P++ TYN LI   C    I+    LF  M     + N
Sbjct: 470 LCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVAN 529

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
             TYN LI ++  R      L    L+ +M+ RG    K T+N ++     +GN
Sbjct: 530 NVTYNTLIHALLRRGAFQKALT---LVNDMLFRGCTLDKITYNGLIKAFCKVGN 580



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 157/341 (46%), Gaps = 3/341 (0%)

Query: 98  TYAHSPSSFDHAIDLAARLRDYRTVWT--LVHRMKSLSLGPTQKTFAIIAERYVSAGKAD 155
            +   P  F + I +    ++    +   LV+ M      P   T+AI+      AG  +
Sbjct: 383 NFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLE 442

Query: 156 RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIA 214
            A  +   M   G   +   +N ++  LC+++KV  A NL      K  K D+ +YN + 
Sbjct: 443 EAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLI 502

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
            G C V R ++A  +   M+  G   N  TYN ++    R G  ++A     +M  R C 
Sbjct: 503 YGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCT 562

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
           +D +TY  ++  F  VG I++   +++ M+  G+     + N MI  LCK   V+NA   
Sbjct: 563 LDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEF 622

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
             + + +G++P+  TYN V+ GLC  G ++ AL    R++ +   P+  TYN  I + C 
Sbjct: 623 LRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCK 682

Query: 395 AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
            G +      F +      +P+  T+N+L+ ++  +   ++
Sbjct: 683 EGMVNDACSFFYRGIENGFVPSNLTWNVLVYTLLKQSNQEN 723



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 172/361 (47%), Gaps = 6/361 (1%)

Query: 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ 171
           ++ +L++ ++   L   M +    P   T+ I+       G    A  +   M   GC  
Sbjct: 366 MSGQLKEAQSF--LNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEP 423

Query: 172 SLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVL 230
           ++ ++  +++ LCK   +E+A  +      +    + + YN +    C  ++ + AL +L
Sbjct: 424 NVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLL 483

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
            EM  +G  P+L TYN ++ G  +  +I+EA+R F  M       + VTY T++H     
Sbjct: 484 SEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRR 543

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           G  ++A  + + M+  G      TYN +I+  CK  ++E  + ++E+M+  G   ++ + 
Sbjct: 544 GAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISC 603

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           N++I GLC  G+++ A EF+    +    P++ TYN ++   C  G I+  L LF+++  
Sbjct: 604 NIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQV 663

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
               P+  TYN  IS        +D   A       ++ GF+P   T+N ++  LL   N
Sbjct: 664 EGVRPDAFTYNTFISWQCKEGMVND---ACSFFYRGIENGFVPSNLTWNVLVYTLLKQSN 720

Query: 471 Q 471
           Q
Sbjct: 721 Q 721



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 113/252 (44%), Gaps = 3/252 (1%)

Query: 90  FNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
            N+LS   T    P   +++  I    ++      + L H M          T+  +   
Sbjct: 480 LNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHA 539

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKAD 206
            +  G   +A+ +   M   GC     ++N ++   CK   +EK   L+ ++      AD
Sbjct: 540 LLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGAD 599

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
            IS N++ NG C V + + A E L++ ++RG  P++ TYN VL G  + G+I+EA   F 
Sbjct: 600 TISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFD 659

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
            ++      D  TY T +      G +  A + F   +  G +PS  T+N ++  L K+ 
Sbjct: 660 RLQVEGVRPDAFTYNTFISWQCKEGMVNDACSFFYRGIENGFVPSNLTWNVLVYTLLKQS 719

Query: 327 SVENAILVFEEM 338
           + EN   V +E+
Sbjct: 720 NQENNFFVLDEL 731



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 135/294 (45%), Gaps = 36/294 (12%)

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK-RKCEIDVVTYTTIVHG 286
           ++L +M + G+    + + I++K Y +AGQ  +A R  L+M+    CE    +Y  ++  
Sbjct: 133 KLLMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDMRAVYLCEPTFKSYDLVLEI 192

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
                  + A NVF  M++ GV P+V T+  +++ LC  + V++A  +  +M   G +PN
Sbjct: 193 LVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPN 252

Query: 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
           S  Y  +I  L    ++  AL+ +  M    C P+VQT+N +I   C   +I    +L +
Sbjct: 253 SIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVD 312

Query: 407 KMG---------------SGVC----------------LPNLDTYNILISSMFVRKKSDD 435
           +M                 G+C                 PN    N LI+   +   S  
Sbjct: 313 RMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIPCPNNAILNTLINGYVM---SGQ 369

Query: 436 LLVAGKLLIE-MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           L  A   L E M++ GF P  FT+N +++GL   G+   A++++   SR G  P
Sbjct: 370 LKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEP 423


>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
 gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
          Length = 684

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 101/378 (26%), Positives = 172/378 (45%), Gaps = 35/378 (9%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           TL+  M  +       TF  +       G    A ++   M  HGC  S+ ++  +L  L
Sbjct: 236 TLLDEMLLMGCAADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGL 295

Query: 184 CKEKKVEKAYNLF------------KVFRGKFK--------------------ADVISYN 211
           C+ ++ ++AY +              V RG                        DV +YN
Sbjct: 296 CRTRQADEAYAMLGRVPEVNVVMLNTVIRGCLAEGKLARATELYEMMGSKGCPPDVHTYN 355

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
           ++ +G C + R   A+ +L EM ++G  PN+ TY+ +L  + R G  ++A     +M  +
Sbjct: 356 ILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAK 415

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
              ++   Y  I++  G  G++  A  +   M + G  P + TYN +I  LC  D ++ A
Sbjct: 416 GFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEA 475

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
             +F  ++ +G + N  TYN +I  L H+G  +  L     M    C  +V +YN LI+ 
Sbjct: 476 EHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLIKA 535

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
            C  G ++R + L E+M +    PN  +YN+LI+ +    K  D L   K   EM+++G 
Sbjct: 536 LCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSK---EMLNQGL 592

Query: 452 MPRKFTFNRVLNGLLLIG 469
            P   T+N ++NGL  +G
Sbjct: 593 TPDIVTYNTLINGLCKVG 610



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 107/401 (26%), Positives = 189/401 (47%), Gaps = 15/401 (3%)

Query: 85  KALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           +ALH  + +     +A +PS  S++  +   AR   +     L  RM    + PT  TF 
Sbjct: 127 RALHLLDQMPRR--FAVTPSFRSYNAVLSTLARADCHADALLLYRRMLRDRVPPTTFTFG 184

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRG 201
           + A      G+A  A+ +   M  HGC      + T++  L  +  V +A  L  ++   
Sbjct: 185 VAARALCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLM 244

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
              ADV ++N +  G C +    +A  ++  M+  G  P++ TY  +L+G  R  Q +EA
Sbjct: 245 GCAADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEA 304

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
           +     M  R  E++VV   T++ G    G++ RA  +++ M + G  P V TYN ++  
Sbjct: 305 Y----AMLGRVPEVNVVMLNTVIRGCLAEGKLARATELYEMMGSKGCPPDVHTYNILMHG 360

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           LCK     +A+ + +EM  KG  PN  TY+ ++   C  G  + A   + +M       N
Sbjct: 361 LCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMN 420

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
            Q YN +I      G+++  + L ++M S  C P++ TYN +I  +    + D+   A  
Sbjct: 421 SQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDE---AEH 477

Query: 442 LLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           +   +++ G +    T+N +++ LL   + G  +E LRL +
Sbjct: 478 IFGNLLEEGVVANGITYNTLIHALL---HSGRWQEGLRLAN 515



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 154/308 (50%), Gaps = 2/308 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++  M+     P   T++ +   +   G  D A  +   M   G   +   +N I+  L 
Sbjct: 373 MLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALG 432

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K+ K+++A  L +  + +  K D+ +YN I    C   + ++A  +   +++ G+  N  
Sbjct: 433 KDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGI 492

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN ++     +G+ +E  R   EM    C +DVV+Y  ++      G + R+  + + M
Sbjct: 493 TYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEM 552

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           +  G+ P+  +YN +I  LCK   V +A+ + +EM+ +G  P+  TYN +I GLC  G  
Sbjct: 553 MTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWT 612

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             AL  + ++ ++   P++ TYNILI + C    ++    L +K  SG  +PN  T+ ++
Sbjct: 613 HAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDASMLLDKAVSGGIVPNERTWGMM 672

Query: 424 ISSMFVRK 431
           + + FVR+
Sbjct: 673 VQN-FVRQ 679



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 126/277 (45%), Gaps = 7/277 (2%)

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           SYN + +          AL + + M+   + P   T+ +  +   R G+  +A      M
Sbjct: 147 SYNAVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARALCRLGRARDALALLRGM 206

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
            +  C  D V Y T++H     G +  A  + D M+  G    V T+N ++  LC    V
Sbjct: 207 ARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCAADVNTFNDVVLGLCGLGHV 266

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
             A  + + M+  G  P+  TY  ++RGLC T + + A   +GR+     E NV   N +
Sbjct: 267 REAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYAMLGRVP----EVNVVMLNTV 322

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           IR     G++ R  EL+E MGS  C P++ TYNIL+  +    +      A ++L EM +
Sbjct: 323 IRGCLAEGKLARATELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGS---AVRMLDEMEE 379

Query: 449 RGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
           +G  P   T++ +L+     G    A+ +L   S  G
Sbjct: 380 KGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKG 416


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 176/365 (48%), Gaps = 7/365 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           LV +M      P   T+  +       G  D A+ +   M     + ++  FNTI+D LC
Sbjct: 210 LVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLC 269

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K + VE A +LF     K  + +V++YN + N  C   R + A  +L  M+++ +NPN+ 
Sbjct: 270 KYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVV 329

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           T+N ++  +F+ G++ EA +   EM +R  + D +TY  +++GF +   +  A+ +F  M
Sbjct: 330 TFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFM 389

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           V+   LP++ TYN +I   CK   VE+ + +F EM  +G + N+ TY  +I+G    G+ 
Sbjct: 390 VSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDC 449

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A     +M  +    ++ TY+IL+   C  G+++  L +F+ +       N+  YN +
Sbjct: 450 DSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTM 509

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I  M    K       G+           P   T+N +++GL        A ++ R    
Sbjct: 510 IEGMCKAGK------VGEAWDLFCSLSIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKE 563

Query: 484 CGRLP 488
            G LP
Sbjct: 564 DGTLP 568



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 111/418 (26%), Positives = 188/418 (44%), Gaps = 53/418 (12%)

Query: 107 DHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE 166
           D A+DL   +   R   ++V   K LS       F ++    +S G+          M  
Sbjct: 65  DDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELV----ISLGE---------QMQT 111

Query: 167 HGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNK 225
            G    L +++  ++  C+  ++  A   L K+ +  ++ D+++ + + NG+C  KR + 
Sbjct: 112 LGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISD 171

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
           A+ ++ +MV+ G  P+  T+  ++ G F   +  EA     +M +R C+ D+VTY T+V+
Sbjct: 172 AVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVN 231

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
           G    G+I  A N+ + M    +  +V  +N +I  LCK   VE A+ +F EM  KG  P
Sbjct: 232 GLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRP 291

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ---------------------- 383
           N  TYN +I  LC+ G    A   +  M + +  PNV                       
Sbjct: 292 NVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLH 351

Query: 384 -------------TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
                        TYN+LI  FC    ++   ++F+ M S  CLPN+ TYN LI+     
Sbjct: 352 EEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKC 411

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           K+ +D     +L  EM  RG +    T+  ++ G    G+   A+ + + Q    R+P
Sbjct: 412 KRVED---GVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFK-QMVSNRVP 465



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 127/283 (44%), Gaps = 33/283 (11%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M    + P   TF  + + +   GK   A K+   M +        ++N +++  C
Sbjct: 315 LLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFC 374

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
              ++++A  +FK    K    ++ +YN + NG+C  KR    +E+ +EM  RGL  N  
Sbjct: 375 MHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTV 434

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF--- 300
           TY  +++G+F+AG  + A   F +M   +   D++TY+ ++HG    G++  A  +F   
Sbjct: 435 TYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYL 494

Query: 301 ----------------DGMVNGG-------------VLPSVATYNAMIQVLCKKDSVENA 331
                           +GM   G             + P V TYN MI  LC K  ++ A
Sbjct: 495 QKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLSIKPDVVTYNTMISGLCSKRLLQEA 554

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
             +F +M   G +PNS TYN +IR      +   + E +  M+
Sbjct: 555 DDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMR 597



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 120/259 (46%), Gaps = 3/259 (1%)

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
           + + + A+++  +MV     P++  +N +L    +  + E       +M+      D+ T
Sbjct: 61  IIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYT 120

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y+  ++ F    ++  A  V   M+  G  P + T ++++   C    + +A+ + ++MV
Sbjct: 121 YSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMV 180

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             GY P++ T+  +I GL    +   A+  V +M    C+P++ TY  ++   C  G+I+
Sbjct: 181 EMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDID 240

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
             L L  KM +     N+  +N +I S+    K   + VA  L  EM  +G  P   T+N
Sbjct: 241 LALNLLNKMEAARIKANVVIFNTIIDSLC---KYRHVEVAVDLFTEMETKGIRPNVVTYN 297

Query: 460 RVLNGLLLIGNQGLAKEIL 478
            ++N L   G    A  +L
Sbjct: 298 SLINCLCNYGRWSDASRLL 316


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 174/337 (51%), Gaps = 33/337 (9%)

Query: 176 FNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           +  I+D  CK+K V  AY+L+ ++   K   +V+++N +  G+C+V +  +A+ +L EM 
Sbjct: 197 YTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMS 256

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
              +NPN+ T+NI++ G  + G++++A      M K+  E +VVTYT+++ G+ +V E+ 
Sbjct: 257 LNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVN 316

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
           +A++VF+ +   GV P+V +Y+ MI  LCK   V+ A+ +F+EM  K   PN+ TY+ +I
Sbjct: 317 KAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLI 376

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
            GLC +G +    + +  + +     N+ TYN L+   C   ++++ + L  KM      
Sbjct: 377 DGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQ 436

Query: 415 PNLDTYNILISSMF-------VRKKSDDLLVAG-------------------------KL 442
           P++ TY  L+  +         ++   DLL  G                          L
Sbjct: 437 PDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSL 496

Query: 443 LIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           L +M D G MP   T+  +++ L      G A ++LR
Sbjct: 497 LSQMEDNGCMPDAVTYETLISALFKNNKNGKAVKLLR 533



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 166/328 (50%), Gaps = 4/328 (1%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           + L   M    + P   TF  +   +   G+   AV +   M  +    ++ +FN ++D 
Sbjct: 214 YDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDG 273

Query: 183 LCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           LCKE +V+KA ++  V  +   + +V++Y  + +G+ LVK  NKA  V   +  RG+ PN
Sbjct: 274 LCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPN 333

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           + +Y++++ G  +   ++EA + F EM  +    + VTY++++ G    G I    ++ D
Sbjct: 334 VHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLID 393

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            + N G   ++ TYN+++  LCK   V+ AI +  +M  +G  P+ +TY  ++ GLC  G
Sbjct: 394 EINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNG 453

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
            ++ A      +       N++ Y ++I   C  G  +  L L  +M    C+P+  TY 
Sbjct: 454 RLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTYE 513

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDR 449
            LIS++F   K+     A KLL EM+ R
Sbjct: 514 TLISALFKNNKNGK---AVKLLREMIAR 538



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 183/371 (49%), Gaps = 11/371 (2%)

Query: 101 HSPSSFDHAIDLAA--RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           H+P  F+    L++  ++  ++   +   +M+   + P   TF I+   +    + + A 
Sbjct: 49  HTPPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFNILINCFSHLCQLNFAF 108

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGW 217
            +   + + G +    + NT+L  LC   KV++A N    V R +F  D +SY  + NG 
Sbjct: 109 SMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFHLDQVSYGTLINGL 168

Query: 218 CLVKRTNKALEVLKEMVDRGL---NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
           C    T  AL++L+++   GL    P++  Y  ++  + +   + +A+  + EM  +K  
Sbjct: 169 CKSGETRAALQLLRKI--EGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIY 226

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
            +VVT+ ++++GF +VG++K A  + + M    V P+V T+N +I  LCK+  V+ A  V
Sbjct: 227 PNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSV 286

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
              M+ +G  PN  TY  ++ G     E+ +A      +      PNV +Y+++I   C 
Sbjct: 287 LSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCK 346

Query: 395 AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
              ++  ++LF++M      PN  TY+ LI  +    +  D+     L+ E+ +RG    
Sbjct: 347 NKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVW---DLIDEINNRGQPAN 403

Query: 455 KFTFNRVLNGL 465
             T+N +LNGL
Sbjct: 404 IITYNSLLNGL 414



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 115/250 (46%), Gaps = 4/250 (1%)

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           P +  +N +L    +    + A  F  +M+ +  + ++ T+  +++ F  + ++  A ++
Sbjct: 51  PPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFNILINCFSHLCQLNFAFSM 110

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
              ++  G  P   T N +++ LC    V+ A+   + ++ K +  +  +Y  +I GLC 
Sbjct: 111 VAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFHLDQVSYGTLINGLCK 170

Query: 360 TGEMERALEFVGRMKDDE-CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLD 418
           +GE   AL+ + +++      P+V  Y  +I  FC    +    +L+ +M      PN+ 
Sbjct: 171 SGETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVV 230

Query: 419 TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           T+N LI    +  +   L  A  LL EM      P  +TFN +++GL   G    A  +L
Sbjct: 231 TFNSLIYGFCIVGQ---LKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVL 287

Query: 479 RLQSRCGRLP 488
            +  + G  P
Sbjct: 288 SVMIKQGVEP 297



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 95/206 (46%), Gaps = 13/206 (6%)

Query: 70  QLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRM 129
           ++VD+ +K       K +H  N+     TY    SS    +  + R+ D   VW L+  +
Sbjct: 348 KMVDEAVK-----LFKEMHLKNMTPNTVTY----SSLIDGLCKSGRISD---VWDLIDEI 395

Query: 130 KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV 189
            +        T+  +        + D+A+ +   M + G +  ++++ T++D LCK  ++
Sbjct: 396 NNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRL 455

Query: 190 EKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
           + A  +++    K +  ++  Y V+ NG C     ++AL +L +M D G  P+  TY  +
Sbjct: 456 KDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTYETL 515

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCE 274
           +   F+  +  +A +   EM  R+ +
Sbjct: 516 ISALFKNNKNGKAVKLLREMIARESD 541


>gi|147793827|emb|CAN62355.1| hypothetical protein VITISV_022418 [Vitis vinifera]
          Length = 546

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 121/431 (28%), Positives = 193/431 (44%), Gaps = 17/431 (3%)

Query: 35  PAAADPAALASLILTSTDPRT--LTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNI 92
           P       + +L+ T  D     +   LH   L  T  LV  ++KR  +    A  FFN 
Sbjct: 82  PDGETALEVQNLLKTYRDSSVSEIEGALHQCRLSLTDDLVLDVLKRHRSDWRPAYVFFNW 141

Query: 93  LS---YHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149
            S       Y+      +  +D+  R+R +  +  L   M        ++TF ++  RY 
Sbjct: 142 ASRCGXESGYSPGCGVHNEILDILGRMRRFHEMTQLFDEMSKRKGLXNERTFGVLLNRYA 201

Query: 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVIS 209
           +A K + AVKIF      G    L +F T+L  LC+ K VE A  LF   + +F  D+ S
Sbjct: 202 AAHKTEEAVKIFYKRKGLGFELDLIAFQTLLMSLCRYKHVEMAEFLFHSKKNEFPPDIKS 261

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
            NVI NGWC++    +A     +++     P+  TY I +    +AG++  A + F  M 
Sbjct: 262 MNVILNGWCVLGSLREAKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQAMW 321

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
           ++ C  DV     I+        I  A  V   M      P VATYN++I+ LCK    E
Sbjct: 322 EKGCNPDVAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHLCKIQRFE 381

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
               + ++M  KG +PN+ TY  +++      E+   LE   RM+ + C  N   YN+++
Sbjct: 382 KVYELLDDMEQKGCLPNARTYGYLLKSTKKPEEVPGILE---RMERNGCRMNSDCYNLIL 438

Query: 390 RYFCDAG---EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
           + + D G   ++   L+  E+ G G   P+  TY I+I  ++ + + DD L   K +  M
Sbjct: 439 KLYMDWGYELKLRSTLDEMERNGMG---PDQRTYTIMIHGLYDKGRMDDALSYFKQMTLM 495

Query: 447 VDRGFMPRKFT 457
              G +P   T
Sbjct: 496 ---GMVPEPRT 503



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 114/254 (44%), Gaps = 4/254 (1%)

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
           + G +P    +N +L    R  +  E  + F EM KRK   +  T+  +++ +    + +
Sbjct: 148 ESGYSPGCGVHNEILDILGRMRRFHEMTQLFDEMSKRKGLXNERTFGVLLNRYAAAHKTE 207

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
            A  +F      G    +  +  ++  LC+   VE A  +F     + + P+  + NV++
Sbjct: 208 EAVKIFYKRKGLGFELDLIAFQTLLMSLCRYKHVEMAEFLFHSKKNE-FPPDIKSMNVIL 266

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
            G C  G +  A  F   +   +C+P+  TY I I     AG++   ++LF+ M    C 
Sbjct: 267 NGWCVLGSLREAKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQAMWEKGCN 326

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           P++   N +I ++  +K+  + L   ++L EM +R   P   T+N ++  L  I      
Sbjct: 327 PDVAICNCIIDALCFKKRIPEAL---EVLREMNERDCQPDVATYNSLIKHLCKIQRFEKV 383

Query: 475 KEILRLQSRCGRLP 488
            E+L    + G LP
Sbjct: 384 YELLDDMEQKGCLP 397


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 105/370 (28%), Positives = 175/370 (47%), Gaps = 39/370 (10%)

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA---------------------- 192
           D A  +++ M   G R SL +FNT++++LCK+ +V++A                      
Sbjct: 184 DLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSL 243

Query: 193 -------YNL---FKVFRGKFK----ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
                  +NL   F +F    K     + ++Y+ + NG C   R  +A+++L+EMV +G+
Sbjct: 244 ILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGI 303

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
            P + TY I L     AG   EA     +MKKR C  ++ T+T ++ G    G+ + A  
Sbjct: 304 EPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIG 363

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
           ++  M+  G++P+  TYNA+I  LC +   E A  +F+ M+  G +P++ TYN +I+  C
Sbjct: 364 LYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFC 423

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLD 418
             G++++A+    +M      PNV TYN LI  +C  G +   + L E M      P+  
Sbjct: 424 LMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAW 483

Query: 419 TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           TY  LIS      +   L  A  L   M++ G  P   T+  +++G   +     A  + 
Sbjct: 484 TYTELISGF---SRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALF 540

Query: 479 RLQSRCGRLP 488
                 G LP
Sbjct: 541 WKMVESGNLP 550



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/368 (28%), Positives = 178/368 (48%), Gaps = 4/368 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+ +MK     P  +TF  +       GK + A+ ++  M   G   +  ++N +++ LC
Sbjct: 329 LLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLC 388

Query: 185 KEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
            E + E A+ +FK  +  G   +   +YN I   +CL+    KA+ +  +M+  G +PN+
Sbjct: 389 VEGRFETAFTIFKWMLSHGSLPS-TQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNV 447

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TYN ++ GY + G +  A R    MK    + D  TYT ++ GF   G+++ A ++F G
Sbjct: 448 ITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYG 507

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M+  G+ P+  TY A+I        V++A+ +F +MV  G +P+S TYNV+I G   T  
Sbjct: 508 MMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNS 567

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           +  A  F G+M      PNV TY   I   C  G      ++F +M      PNL TY+ 
Sbjct: 568 ISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSS 627

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           LI  +    +++D  +   LL  +   G  P   T+  ++ GL   G    A +++    
Sbjct: 628 LIYGLCQEGRAEDAEMY-NLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQ 686

Query: 483 RCGRLPRQ 490
           + G  P +
Sbjct: 687 KKGLQPSE 694



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 102/411 (24%), Positives = 183/411 (44%), Gaps = 36/411 (8%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            R+++ + + + + R  +    P   T+  +   +      D A  +F  M + GC  + 
Sbjct: 216 GRVQEAKLIMSHIFRYDAY---PNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNS 272

Query: 174 NSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
            +++T+++ LC E ++E+A ++ + + +   +  V +Y +     C    +++A+E+L +
Sbjct: 273 VTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGK 332

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M  RG  PN+ T+  ++ G  R G+ E A   + +M         VTY  +++   V G 
Sbjct: 333 MKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGR 392

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
            + A  +F  M++ G LPS  TYN +I+  C    ++ A+++F++M+  G  PN  TYN 
Sbjct: 393 FETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNT 452

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           +I G C  G +  A+  +  MK +  +P+  TY  LI  F   G++E    LF  M    
Sbjct: 453 LIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHG 512

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE--------------------------- 445
             PN  TY  +I   F   K DD L     ++E                           
Sbjct: 513 ISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAE 572

Query: 446 -----MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
                MV +G +P   T+   ++GL   G  GLA +I     +    P  +
Sbjct: 573 NFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLY 623



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 145/309 (46%), Gaps = 3/309 (0%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           + T +T+   M S    P+ +T+  I + +   G   +A+ IF  M + G   ++ ++NT
Sbjct: 393 FETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNT 452

Query: 179 ILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           ++   CK+  +  A  L ++ +G   K D  +Y  + +G+    +   A  +   M++ G
Sbjct: 453 LIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHG 512

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
           ++PN  TY  ++ GYF   ++++A   F +M +        TY  ++ GF     I  A 
Sbjct: 513 ISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAE 572

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
           N    MV  G+LP+V TY + I  LC+      A  +F EM  + Y PN  TY+ +I GL
Sbjct: 573 NFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGL 632

Query: 358 CHTGEMERA--LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
           C  G  E A     + R+    CEPNV TY  L++  C  G      +L   M      P
Sbjct: 633 CQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQP 692

Query: 416 NLDTYNILI 424
           + + Y  L+
Sbjct: 693 SEEIYRALL 701



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 108/453 (23%), Positives = 179/453 (39%), Gaps = 77/453 (16%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F   I   +R   +     L H+M +  L PT  T+  +  +    G+ + A  IF  M
Sbjct: 344 TFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWM 403

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
             HG   S  ++N I+   C    ++KA  +F K+ +     +VI+YN +  G+C     
Sbjct: 404 LSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNL 463

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           N A+ +L+ M   GL P+  TY  ++ G+ R G++E A   F  M +     + VTYT I
Sbjct: 464 NNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAI 523

Query: 284 V-----------------------------------HGFGVVGEIKRARNVFDGMVNGGV 308
           +                                    GF     I  A N    MV  G+
Sbjct: 524 IDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGL 583

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN---------------------- 346
           LP+V TY + I  LC+      A  +F EM  + Y PN                      
Sbjct: 584 LPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEM 643

Query: 347 ---------------STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
                            TY  +++GLC  G    A + V  M+    +P+ + Y  L+  
Sbjct: 644 YNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIG 703

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
            C   ++E  L +F  M +     +L  Y  LI ++    K + +  A  +   M+++ +
Sbjct: 704 ECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALC---KENFIEEAQCIFQTMLEKHW 760

Query: 452 MPRKFTFNRVLNGLLLIGNQGLAKEILR-LQSR 483
              +  +  +L+GLL  G   L  ++L  ++SR
Sbjct: 761 NSDEVAWTVLLDGLLKEGETDLCLKLLHVMESR 793



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 134/307 (43%), Gaps = 45/307 (14%)

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM-KKRKCEID 276
           C V   N+ +       DR   P      +++K     G+++   +F  E+  K      
Sbjct: 113 CFVSMLNRLVR------DRLFAPADHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGYT 166

Query: 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV-- 334
           + ++TT++   G    +  AR+++  M+N G+ PS+ T+N MI +LCKK  V+ A L+  
Sbjct: 167 LCSFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMS 226

Query: 335 ---------------------------------FEEMVGKGYMPNSTTYNVVIRGLCHTG 361
                                            F+ MV  G  PNS TY+ +I GLC  G
Sbjct: 227 HIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEG 286

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
            +E A++ +  M     EP V TY I +   CDAG     +EL  KM    C+PN+ T+ 
Sbjct: 287 RLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFT 346

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481
            LIS +    +     +A  L  +M+  G +P   T+N ++N L + G    A  I +  
Sbjct: 347 ALISGL---SRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWM 403

Query: 482 SRCGRLP 488
              G LP
Sbjct: 404 LSHGSLP 410



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 134/303 (44%), Gaps = 3/303 (0%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           +L + M    + P   T+  I + Y +  K D A+ +F  M E G   S  ++N ++   
Sbjct: 503 SLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGF 562

Query: 184 CKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
            K   + +A N   K+ +     +VI+Y    +G C   RT  A ++  EM  R   PNL
Sbjct: 563 SKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNL 622

Query: 243 TTYNIVLKGYFRAGQIEEA--WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
            TY+ ++ G  + G+ E+A  +     +    CE +V TYTT+V G    G    A  + 
Sbjct: 623 YTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLV 682

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
             M   G+ PS   Y A++   CK   VE+A+ +F  M   G+  + + Y  +I  LC  
Sbjct: 683 VSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKE 742

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
             +E A      M +     +   + +L+      GE +  L+L   M S  C  N  TY
Sbjct: 743 NFIEEAQCIFQTMLEKHWNSDEVAWTVLLDGLLKEGETDLCLKLLHVMESRNCTLNFQTY 802

Query: 421 NIL 423
            +L
Sbjct: 803 VML 805



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 113/266 (42%), Gaps = 38/266 (14%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           +M    L P   T+    +     G+   A KIF  M +     +L ++++++  LC+E 
Sbjct: 577 KMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEG 636

Query: 188 KVEKA--YNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
           + E A  YNL  ++     + +V +Y  +  G C   R  +A +++  M  +GL P+   
Sbjct: 637 RAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEI 696

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           Y  +L G               E K  K E                     A N+F  M 
Sbjct: 697 YRALLIG---------------ECKNLKVE--------------------SALNIFYSMD 721

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
             G    ++ Y A+I  LCK++ +E A  +F+ M+ K +  +   + V++ GL   GE +
Sbjct: 722 TLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVAWTVLLDGLLKEGETD 781

Query: 365 RALEFVGRMKDDECEPNVQTYNILIR 390
             L+ +  M+   C  N QTY +L R
Sbjct: 782 LCLKLLHVMESRNCTLNFQTYVMLAR 807


>gi|449500717|ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g02060, chloroplastic-like [Cucumis sativus]
          Length = 720

 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 116/451 (25%), Positives = 209/451 (46%), Gaps = 49/451 (10%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQ---KTF 141
           KAL FFN  +    Y H+  S+   +++  R R   T    +  ++  S G  +   + F
Sbjct: 94  KALQFFN-WAQEMGYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRSRGIVKLEARFF 152

Query: 142 AIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG 201
             +   +  AG    ++K+F  M  HG   S+ +FN++L +L K  +   A  ++     
Sbjct: 153 NSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLS 212

Query: 202 KFKA--DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
            +    D  ++N++  G+C+    +    +  ++   G  P++ TYN ++ G  RAG++ 
Sbjct: 213 TYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKVT 272

Query: 260 EAWRFFLEMKKRKCEI--DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
            A+     M K+  ++  +VVTYTT++ G+    EI++A  VF+ MVN G+  +  TYN 
Sbjct: 273 VAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITYNT 332

Query: 318 MIQVLCKKDSVENAILVFEEMVGKG-YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
           +I+ LC+    E    + E   G G + P++ T+N ++   CH G ++ AL+   RM + 
Sbjct: 333 LIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSEL 392

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKM--------GSGVCLPNLDTYNILISSM- 427
           + +P+  TY+ L+R  C  G  E+  +L +K+        G G C P +  YN +   + 
Sbjct: 393 KIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDG-CKPLVAAYNPIFKYLC 451

Query: 428 --------------FVRKKSDD-----LLVAG-----------KLLIEMVDRGFMPRKFT 457
                          +R+ + D      L+ G           +LL+ M+ + F P   T
Sbjct: 452 ETGKTKKAEKAFRQLMRRGTQDPPSYKTLIMGHCKEGTFESGYELLVLMLRKDFXPDFET 511

Query: 458 FNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           +  ++NGLL +    LA + L    R    P
Sbjct: 512 YESLINGLLHMDKPLLALQSLEKMLRSSHRP 542



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 106/361 (29%), Positives = 169/361 (46%), Gaps = 22/361 (6%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           + +  + P   TF I+   +   G  D   +IF  +   GC   + ++NT++D LC+  K
Sbjct: 211 LSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGK 270

Query: 189 VEKAYNLFKVFRGK---FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
           V  AYN+ K    K      +V++Y  +  G+C  +   KAL V +EMV++GL  N  TY
Sbjct: 271 VTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITY 330

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEI--DVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           N ++KG   A + E+  +  LE          D  T+ T++H     G +  A  VF+ M
Sbjct: 331 NTLIKGLCEARKFEKI-KDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFERM 389

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV-------GKGYMPNSTTYNVVIRG 356
               + P  ATY+A+++ LC+    E A  + ++++       G G  P    YN + + 
Sbjct: 390 SELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLVAAYNPIFKY 449

Query: 357 LCHTGEMERALE-FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
           LC TG+ ++A + F   M+    +P   +Y  LI   C  G  E G EL   M      P
Sbjct: 450 LCETGKTKKAEKAFRQLMRRGTQDP--PSYKTLIMGHCKEGTFESGYELLVLMLRKDFXP 507

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
           + +TY  LI+ +      D  L+A + L +M+     P   TF+ +L  LL    QG A 
Sbjct: 508 DFETYESLINGLL---HMDKPLLALQSLEKMLRSSHRPNSSTFHSILAKLL---EQGRAS 561

Query: 476 E 476
           E
Sbjct: 562 E 562



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/345 (20%), Positives = 137/345 (39%), Gaps = 45/345 (13%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRM--KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFL 162
           +++  +D   R       + +V  M  KS+ L P   T+  +   Y +  + ++A+ +F 
Sbjct: 257 TYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFE 316

Query: 163 SMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLV 220
            M   G + +  ++NT++  LC+ +K EK  ++ +     G F  D  ++N + +  C  
Sbjct: 317 EMVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHA 376

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK-------C 273
              + AL+V + M +  + P+  TY+ +++   + G  E+A     ++ +RK       C
Sbjct: 377 GNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGC 436

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV------------------------- 308
           +  V  Y  I       G+ K+A   F  ++  G                          
Sbjct: 437 KPLVAAYNPIFKYLCETGKTKKAEKAFRQLMRRGTQDPPSYKTLIMGHCKEGTFESGYEL 496

Query: 309 ---------LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
                     P   TY ++I  L   D    A+   E+M+   + PNS+T++ ++  L  
Sbjct: 497 LVLMLRKDFXPDFETYESLINGLLHMDKPLLALQSLEKMLRSSHRPNSSTFHSILAKLLE 556

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
            G    +   +  M D     N+      +R    AG  ++  +L
Sbjct: 557 QGRASESASLIQLMLDKNIRQNLSFSTGCVRLLFGAGMNDKAFQL 601


>gi|302763305|ref|XP_002965074.1| hypothetical protein SELMODRAFT_83127 [Selaginella moellendorffii]
 gi|300167307|gb|EFJ33912.1| hypothetical protein SELMODRAFT_83127 [Selaginella moellendorffii]
          Length = 484

 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 118/456 (25%), Positives = 203/456 (44%), Gaps = 79/456 (17%)

Query: 69  PQLVDQIIKRLWNHALKALHFFNILSYHPTYAHS-------------------------- 102
           P+LV  +I+R+ + AL A  FF+  S    Y H                           
Sbjct: 11  PRLVGSVIRRVPSLAL-ARKFFDWSSKQEGYRHDVYCYTRLLHHLVRARRTREAVRFFKR 69

Query: 103 -------PS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGK 153
                  PS  SF   I     +R+    W  +  M+SL + P    + ++ + Y   G+
Sbjct: 70  ELCAHCRPSLYSFTIIIQCFCNVRNPGRAWRYLGYMRSLGIPPDVTAYNVVLKGYCDLGR 129

Query: 154 ADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF----------------- 196
             RA+  F  M +  C+ ++ ++NT+++ LCK  K++ A +LF                 
Sbjct: 130 VGRALIKFGKMGK-TCKPNVATYNTVINGLCKFGKIDWAVHLFTRLPHDLVDPDGFTYST 188

Query: 197 ---------------KVF----RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
                          KV+       +  D  +YN +A+G+C  +R ++ALEVLK M+ R 
Sbjct: 189 LVHGLCQAERLEAAIKVYDMMLEANYDGDAGAYNAMADGFCKERRVDEALEVLKTMIQRR 248

Query: 238 LNPNLTTYNIVLKGYFR-AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
             P++ TYN ++ G  +   +IEEA+R F +M    C  + VTY T++ G   + E++R 
Sbjct: 249 CKPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILGLSKIYEVQRC 308

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
             +F GM   G+ P    Y+++I    K   ++ A  + ++       P+   Y  +I G
Sbjct: 309 LELFKGMSKAGLSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPDVYMYTTLISG 368

Query: 357 LCHTGE--MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
            C   +  ++ AL     MKD    PNV TYNI++R  C  G  +   ++F++M    C 
Sbjct: 369 YCRARKPRVDEALLLFQNMKDRRVWPNVITYNIVLRGLCKTGRFDEAYQIFQEMFKVKCS 428

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450
           PN  T+ ++   M   +K+D      ++ ++MV +G
Sbjct: 429 PNRMTFKVMTMGMIHCRKTDKF---ERIFMDMVYKG 461


>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 606

 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 96/300 (32%), Positives = 169/300 (56%), Gaps = 8/300 (2%)

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVK---RTNKALEVL 230
           +FN +++ LCK  K+ KA ++ +  +   +  +V+SYN + +G+C +    +  KA  VL
Sbjct: 225 TFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKADAVL 284

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
           KEMV+  ++PNLTT+NI++ G+++   +  + + F EM  +    +V+TY ++++G    
Sbjct: 285 KEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNG 344

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           G+I  A  + D MV+ GV P++ TY+++I   CK   ++ A+ +F+ + G+G  P +  Y
Sbjct: 345 GKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMY 404

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           N++I   C  G+++        M+ +   P+V TYN LI   C  G IE   +LF+++ +
Sbjct: 405 NMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQL-T 463

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
              LP+L T++IL+     R +S     A  LL EM   G  PR  T+N ++ G    GN
Sbjct: 464 NKGLPDLVTFHILMEGYCSRGESRK---AAMLLKEMSKMGLKPRHLTYNIMMKGYCKEGN 520



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 131/520 (25%), Positives = 236/520 (45%), Gaps = 49/520 (9%)

Query: 2   FALLRKPPKNHLHFFCIYRGLSPLTTTSPAPLPPAAADPAALASLI-----------LTS 50
           FA+ RK          + R  S L T + +P PP   D A +A LI           +  
Sbjct: 6   FAVSRKISNFIKQASGLRRLASSLATITGSPCPPRF-DVAVIADLIEKQHWSKLGFHVKD 64

Query: 51  TDPRTLTQTLHCPSLH---------WTPQLVD-----QIIKRLWNHALKALHFFNILSYH 96
            +P  L + L    L+         W  +  D     ++  +L +    A  +  I S+ 
Sbjct: 65  INPNELFRQLISSELNPDLCLRYYTWLVKNRDISVSLELTFKLLHSLANAKRYSKIRSFL 124

Query: 97  PTYAHSPSSFD-HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKAD 155
             +  + S    H+I  A  + D   V +++  M  L+              Y +  + +
Sbjct: 125 DGFVRNGSDHQVHSIFHAISMCDNVCVNSIIADMLVLA--------------YANNSRFE 170

Query: 156 RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIA 214
              + F     +G + S  S   ++  L K+ +      L+K + R K + +V ++NV+ 
Sbjct: 171 LGFEAFKRSGYYGYKLSAMSCKPLMVALLKQNRSADVEYLYKEMIRRKIQPNVFTFNVVI 230

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR---AGQIEEAWRFFLEMKKR 271
           N  C   + NKA +V+++M   G +PN+ +YN ++ GY +    G++ +A     EM + 
Sbjct: 231 NALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVEN 290

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
           +   ++ T+  ++ GF     +  +  VF  M++  V+P+V TYN++I  LC    +  A
Sbjct: 291 EVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEA 350

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
           I + ++MV  G  PN  TY+ +I G C  G M+ AL+    +K     P  + YN+LI  
Sbjct: 351 IGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDA 410

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
           +C  G+I+ G  L E+M     +P++ TYN LI+ +    ++ ++  A KL  ++ ++G 
Sbjct: 411 YCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLC---RNGNIEAAKKLFDQLTNKG- 466

Query: 452 MPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           +P   TF+ ++ G    G    A  +L+  S+ G  PR  
Sbjct: 467 LPDLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHL 506



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 172/375 (45%), Gaps = 23/375 (6%)

Query: 81  NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKT 140
           N A   +    +  Y P      +  D    L    + Y+    L   M    + P   T
Sbjct: 240 NKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKADAVL-KEMVENEVSPNLTT 298

Query: 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVF 199
           F I+ + +        ++K+F  M +     ++ ++N++++ LC   K+ +A  +  K+ 
Sbjct: 299 FNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKMV 358

Query: 200 RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
               + ++I+Y+ + NG+C      +AL++   +  +G  P    YN+++  Y + G+I+
Sbjct: 359 SAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKID 418

Query: 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319
           + +    EM++     DV TY  ++ G    G I+ A+ +FD + N G LP + T++ ++
Sbjct: 419 DGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKG-LPDLVTFHILM 477

Query: 320 QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM-KDDEC 378
           +  C +     A ++ +EM   G  P   TYN++++G C  G ++ A     +M K+   
Sbjct: 478 EGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQMEKERRL 537

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
             NV +YN+L++ +   G++E    L  +M     +PN  TY I+               
Sbjct: 538 RMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKE------------- 584

Query: 439 AGKLLIEMVDRGFMP 453
                 EMVD+GF+P
Sbjct: 585 ------EMVDKGFVP 593



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 108/212 (50%), Gaps = 17/212 (8%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           PT + + ++ + Y   GK D    +   M   G    + ++N ++  LC+   +E A  L
Sbjct: 399 PTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKL 458

Query: 196 FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
           F     K   D+++++++  G+C    + KA  +LKEM   GL P   TYNI++KGY + 
Sbjct: 459 FDQLTNKGLPDLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYCKE 518

Query: 256 GQIEEAWRFFLEM-KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
           G ++ A     +M K+R+  ++V +Y  ++ G+   G+++ A  + + M+  G++P+  T
Sbjct: 519 GNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRIT 578

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
           Y                 +V EEMV KG++P+
Sbjct: 579 YE----------------IVKEEMVDKGFVPD 594


>gi|357121285|ref|XP_003562351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 624

 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 175/383 (45%), Gaps = 49/383 (12%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++  M S S  P    + +I E    +G    A+++  ++H  G      + N +++ +C
Sbjct: 138 VLDEMTSRSCVPIPPMYHVIIESACRSGGYSSALRVLEALHAKGSTLDTGNCNLVINAIC 197

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV--------- 234
            +  V++   +  K+     +AD++SYN +  G C  KR     E++ EMV         
Sbjct: 198 DQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGDVEELMDEMVKVHEALSQM 257

Query: 235 ------------------------------------DRGLNPNLTTYNIVLKGYFRAGQI 258
                                                 GL PN+  YN VLKG   A + 
Sbjct: 258 AQHGCTPDIRMYATIIDGICKEGHHEVANEILSRMPSYGLKPNVVCYNTVLKGICSADRW 317

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           E+A     EM ++ C +D VT+  +V  F   G + R   + + M+  G +P V TY  +
Sbjct: 318 EKAEELLTEMYQKNCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTV 377

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           I   CK+  ++ A+++ + M   G  PN+ +Y +V++GLC T     A E + RM    C
Sbjct: 378 INGFCKEGLIDEAVMLLKNMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGC 437

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
            PN  T+N +I + C  G +E+ +EL ++M    C P+L +Y+ +I  +    K+++ L 
Sbjct: 438 LPNPVTFNTIINFLCKKGLVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEAL- 496

Query: 439 AGKLLIEMVDRGFMPRKFTFNRV 461
             +LL  M+++G  P   T++ +
Sbjct: 497 --ELLNVMINKGITPNVITYSSM 517



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 103/388 (26%), Positives = 192/388 (49%), Gaps = 8/388 (2%)

Query: 111 DLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCR 170
           D+   + +   V   + +M      P  + +A I +     G  + A +I   M  +G +
Sbjct: 239 DVEELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEILSRMPSYGLK 298

Query: 171 QSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEV 229
            ++  +NT+L  +C   + EKA  L  ++++     D +++N++ + +C     ++ +E+
Sbjct: 299 PNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQNGLVDRVIEL 358

Query: 230 LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289
           L++M++ G  P++ TY  V+ G+ + G I+EA      M    C+ + ++YT ++ G   
Sbjct: 359 LEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCGCKPNTISYTIVLKGLCS 418

Query: 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
                 A  +   M+  G LP+  T+N +I  LCKK  VE AI + ++M+  G  P+  +
Sbjct: 419 TERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKGLVEQAIELLKQMLVNGCNPDLIS 478

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
           Y+ VI GL   G+ E ALE +  M +    PNV TY+ +       G I++ +++F+ + 
Sbjct: 479 YSTVIDGLGKAGKTEEALELLNVMINKGITPNVITYSSMAFALAREGRIDKVIQMFDNIQ 538

Query: 410 SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL---- 465
                 +   YN +ISS+  R+++D   +A   L  MV  G MP + T+  ++ GL    
Sbjct: 539 DATIRSDAVLYNAVISSLCKRRETD---LAIDFLAYMVSNGCMPNESTYTALIKGLASEG 595

Query: 466 LLIGNQGLAKEILRLQSRCGRLPRQFKL 493
           LL   Q L  E+   ++    L R+F +
Sbjct: 596 LLCEAQDLLSELCSRRAVRKHLTRRFGI 623



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 154/383 (40%), Gaps = 53/383 (13%)

Query: 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISY 210
           AG+   AV+   ++   G    +  +N ++   C+  +VE A  L          +  +Y
Sbjct: 65  AGRTADAVR---ALDAAGNAAGVVDYNAMVAGYCRVGQVEAARRLAAAV--PVPPNAYTY 119

Query: 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF----- 265
             +  G C   R   AL VL EM  R   P    Y+++++   R+G    A R       
Sbjct: 120 FPVVRGLCGRGRIADALAVLDEMTSRSCVPIPPMYHVIIESACRSGGYSSALRVLEALHA 179

Query: 266 --------------------------LEMKKR----KCEIDVVTYTTIVHGFG------- 288
                                     LEM ++     CE D+V+Y  ++ G         
Sbjct: 180 KGSTLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGD 239

Query: 289 ---VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
              ++ E+ +       M   G  P +  Y  +I  +CK+   E A  +   M   G  P
Sbjct: 240 VEELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEILSRMPSYGLKP 299

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           N   YN V++G+C     E+A E +  M    C  +  T+NIL+ +FC  G ++R +EL 
Sbjct: 300 NVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQNGLVDRVIELL 359

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           E+M    C+P++ TY  +I+        D+ ++   LL  M   G  P   ++  VL GL
Sbjct: 360 EQMLEHGCMPDVITYTTVINGFCKEGLIDEAVM---LLKNMPSCGCKPNTISYTIVLKGL 416

Query: 466 LLIGNQGLAKEILRLQSRCGRLP 488
                   A+E++    + G LP
Sbjct: 417 CSTERWVDAEELMSRMIQQGCLP 439



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 117/271 (43%), Gaps = 19/271 (7%)

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           C+  RT  A+  L      G    +  YN ++ GY R GQ+E A R    +       + 
Sbjct: 63  CVAGRTADAVRALDAA---GNAAGVVDYNAMVAGYCRVGQVEAARRLAAAVPVPP---NA 116

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
            TY  +V G    G I  A  V D M +   +P    Y+ +I+  C+     +A+ V E 
Sbjct: 117 YTYFPVVRGLCGRGRIADALAVLDEMTSRSCVPIPPMYHVIIESACRSGGYSSALRVLEA 176

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA-- 395
           +  KG   ++   N+VI  +C  G ++  LE + ++    CE ++ +YN +++  C A  
Sbjct: 177 LHAKGSTLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAKR 236

Query: 396 -GEIERGL-------ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
            G++E  +       E   +M    C P++  Y  +I  +      +   VA ++L  M 
Sbjct: 237 WGDVEELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHE---VANEILSRMP 293

Query: 448 DRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
             G  P    +N VL G+        A+E+L
Sbjct: 294 SYGLKPNVVCYNTVLKGICSADRWEKAEELL 324


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 173/349 (49%), Gaps = 5/349 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   + +       L   + + +L PT  ++  + +   ++G+     K+   M
Sbjct: 337 NYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEM 396

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRT 223
           H       + ++N ++D LCKE ++ +A   L  + +   K ++++YN + +G+CL    
Sbjct: 397 HGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNV 456

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           N A ++   MV  GL P++  YN+++ GY +   ++EA   F EM+ +    D+ +Y ++
Sbjct: 457 NVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSL 516

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G   +G I   + + D M + G  P V TYN ++   CK    + AI +F ++V +G 
Sbjct: 517 IDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIV-EGI 575

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+  T + ++  LC   +++ A + +  +    C PNVQTY ILI   C  G     + 
Sbjct: 576 WPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAML 635

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
           L  KM      P+  T+ I+I  +  R ++D    A KL  EM+ RG +
Sbjct: 636 LLSKMEDNDRPPDAITFEIIIGVLLQRNETDK---AEKLREEMIARGLV 681



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 181/362 (50%), Gaps = 5/362 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID    +  ++ V  L+ +M   ++ P   TF I+ +     G+   A  +   M
Sbjct: 232 TYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMM 291

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
            + G +  + ++N +++  C  + V +A  LF ++ +   + DV++YNV+ +G+C  K  
Sbjct: 292 SKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMV 351

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           ++A+ + KE+ ++ L P + +YN ++ G   +G+I    +   EM       DVVTY  +
Sbjct: 352 DEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNIL 411

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +      G I  A  V   M+  GV P++ TYNAM+   C +++V  A  +F  MV  G 
Sbjct: 412 IDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGL 471

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+   YNV+I G C T  ++ A+     M+     P++ +YN LI   C+ G I    E
Sbjct: 472 EPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQE 531

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           L ++M      P++ TYNIL+ + F + +  D  ++   L   +  G  P  +T + +++
Sbjct: 532 LLDEMCDSGQSPDVITYNILLDA-FCKTQPFDKAIS---LFRQIVEGIWPDFYTNHAIVD 587

Query: 464 GL 465
            L
Sbjct: 588 NL 589



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 160/328 (48%), Gaps = 4/328 (1%)

Query: 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF- 196
           Q T+  +       G+   A+ +   M +   + +L  ++ ++D LCK+  V  A  L  
Sbjct: 160 QFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCS 219

Query: 197 KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256
           ++       D ++YN + +G C V R  +  ++L +MV   ++P+  T+NI++    + G
Sbjct: 220 QIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEG 279

Query: 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
           +I EA      M KR  + D+VTY  ++ G+     +  AR +F+ MV  G+ P V  YN
Sbjct: 280 RILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYN 339

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
            +I   CK   V+ A+++F+E+  K  +P   +YN +I GLC++G +    + +  M   
Sbjct: 340 VLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGS 399

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
              P+V TYNILI   C  G I   L +   M      PN+ TYN ++    +R   +  
Sbjct: 400 AQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVN-- 457

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
            VA  +   MV  G  P    +N ++NG
Sbjct: 458 -VAKDIFNRMVKSGLEPDILNYNVLING 484



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 105/418 (25%), Positives = 186/418 (44%), Gaps = 33/418 (7%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           S FD  +    R+  Y T  +L  +++S  + P+  TF I+   Y        A  +  +
Sbjct: 56  SVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLAT 115

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKR 222
           + + G + +L +FNTI++  C    + KA +  +    + +  D  +Y  + NG     +
Sbjct: 116 ILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQ 175

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
              AL +L+EM    + PNL  Y+ ++ G  + G + +A     ++ +R   +D VTY +
Sbjct: 176 IKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNS 235

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++ G   VG  +    +   MV   V P   T+N +I  LCK+  +  A  V   M  +G
Sbjct: 236 LIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRG 295

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
             P+  TYN ++ G C    +  A E   RM     EP+V  YN+LI  +C    ++  +
Sbjct: 296 EKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAM 355

Query: 403 ELFEKMGSGVCLPNLDTYNILISSM-------FVRKKSDDL------------------- 436
            LF+++ +   +P + +YN LI  +        V+K  D++                   
Sbjct: 356 VLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDAL 415

Query: 437 ------LVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
                 L A  +L+ M+ +G  P   T+N +++G  L  N  +AK+I     + G  P
Sbjct: 416 CKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEP 473



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 121/271 (44%), Gaps = 3/271 (1%)

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           C  +  + A+     MV     P  + ++ +L    R G    A   F +++ +     +
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
            T+T +++ +        A ++   ++  G  P++ T+N +I   C    +  A+   + 
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQN 150

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           ++ +GY+ +  TY  +I GL   G+++ AL  +  M+    +PN+  Y+ LI   C  G 
Sbjct: 151 LLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGF 210

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           +   L L  ++G    L +  TYN LI       +  ++    +LL +MV     P  +T
Sbjct: 211 VSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVT---QLLTKMVRENVDPDDYT 267

Query: 458 FNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           FN +++ L   G    A+ +L + S+ G  P
Sbjct: 268 FNILIDALCKEGRILEAQGVLAMMSKRGEKP 298


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 164/316 (51%), Gaps = 4/316 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+  +    +  G+   AV +F  M     +  + +FN ++D LCKE +++KA N+
Sbjct: 237 PDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNV 296

Query: 196 FKV-FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             V  +    +++++YN + +G+ LVK+ NKA  V   M  RG+ P++ +Y+I++ G  +
Sbjct: 297 LAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCK 356

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
              ++EA   F EM  +    + VTY +++ G    G I  A ++ + M N G    V T
Sbjct: 357 TKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVIT 416

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y++++  LCK   V+ AI +  ++  +G  PN  TY +++ GLC  G ++ A      + 
Sbjct: 417 YSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDLL 476

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
                 +V+ YN+++   C  G  +  L L  KM    C+P+  TY  L+ ++F   K+D
Sbjct: 477 IKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCIPDAVTYETLVRALFENDKND 536

Query: 435 DLLVAGKLLIEMVDRG 450
               A KLL EM+ +G
Sbjct: 537 K---AVKLLREMIVQG 549



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 155/292 (53%), Gaps = 4/292 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L ++M   ++ P   TF I+ +     G+  +A  +   M + G   ++ ++N+++D   
Sbjct: 261 LFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYF 320

Query: 185 KEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
             K+  KA  +F    R     DV SY+++ NG C  K  ++A+ + KEM  + + PN  
Sbjct: 321 LVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTV 380

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN ++ G  + G+I +AW    EM  R    DV+TY++++       ++ +A  +   +
Sbjct: 381 TYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKI 440

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            + G+ P++ TY  ++  LCK   +++A  V+++++ KGY  +   YNV++ GLC  G  
Sbjct: 441 KDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLF 500

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM---GSGV 412
           + AL  V +M+D+ C P+  TY  L+R   +  + ++ ++L  +M   GS V
Sbjct: 501 DEALSLVSKMEDNGCIPDAVTYETLVRALFENDKNDKAVKLLREMIVQGSAV 552



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 180/347 (51%), Gaps = 7/347 (2%)

Query: 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF- 196
           Q ++  +       G+   A+++   +     + ++  +NTI+D LCK+K V  A +L  
Sbjct: 169 QVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCS 228

Query: 197 KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256
           ++   +   DV++Y  +  G  +V R  +A+ +  +M+ + + P++ T+NI++ G  + G
Sbjct: 229 EMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEG 288

Query: 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
           ++++A      M K+  + ++VTY +++ G+ +V +  +A  VF+ M   GV P V +Y+
Sbjct: 289 EMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYS 348

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
            MI  LCK   V+ A+ +F+EM  K   PN+ TYN +I GL   G +  A + V  M + 
Sbjct: 349 IMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNR 408

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
               +V TY+ L+   C   ++++ + L  K+      PN+ TY IL+  +    +  D 
Sbjct: 409 GQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKD- 467

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
             A  +  +++ +G+      +N ++NGL     +GL  E L L S+
Sbjct: 468 --AQAVYQDLLIKGYHLDVKMYNVMVNGLC---KEGLFDEALSLVSK 509



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 168/361 (46%), Gaps = 4/361 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           F+  +    +L  + T  +   +M+   + P   TF I+   +   G  + A  +   + 
Sbjct: 67  FNKILSSLVKLNHFHTAISFSKQMELKQIQPDLFTFNILINCFCHLGHLNFAFSVLAKIF 126

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTN 224
           + G      +  T++  LC   KV +A +    V    F  D +SY  + NG C    T 
Sbjct: 127 KLGFHPDTVTITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQVSYGTLINGLCKTGETR 186

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
            AL+VL+++    + PN+  YN ++    +   +  A     EM  ++   DVVTYTT++
Sbjct: 187 AALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLI 246

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
           +G  +VG +K A  +F+ M+   + P V T+N ++  LCK+  ++ A  V   M+ +G  
Sbjct: 247 YGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVD 306

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
            N  TYN ++ G     +  +A      M      P+VQ+Y+I+I   C    ++  + L
Sbjct: 307 SNIVTYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNL 366

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           F++M S    PN  TYN LI  +    +  D   A  L+ EM +RG      T++ +L+ 
Sbjct: 367 FKEMHSKSMAPNTVTYNSLIDGLLKYGRISD---AWDLVNEMHNRGQPADVITYSSLLDA 423

Query: 465 L 465
           L
Sbjct: 424 L 424



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 126/282 (44%), Gaps = 3/282 (1%)

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           +  +N I +    +   + A+   K+M  + + P+L T+NI++  +   G +  A+    
Sbjct: 64  IFEFNKILSSLVKLNHFHTAISFSKQMELKQIQPDLFTFNILINCFCHLGHLNFAFSVLA 123

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           ++ K     D VT TT++ G  + G+++ A +  D ++  G      +Y  +I  LCK  
Sbjct: 124 KIFKLGFHPDTVTITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQVSYGTLINGLCKTG 183

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
               A+ V  ++ G    PN   YN +I  LC    +  A +    M      P+V TY 
Sbjct: 184 ETRAALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYT 243

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            LI      G ++  + LF +M      P++ T+NIL+  +    K  ++  A  +L  M
Sbjct: 244 TLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLC---KEGEMKKARNVLAVM 300

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           + +G      T+N +++G  L+  +  A  +    +R G  P
Sbjct: 301 IKQGVDSNIVTYNSLMDGYFLVKQENKATFVFNTMARRGVTP 342



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 85/173 (49%), Gaps = 3/173 (1%)

Query: 98  TYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRA 157
           + A +  +++  ID   +       W LV+ M +        T++ + +      + D+A
Sbjct: 374 SMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKA 433

Query: 158 VKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIAN 215
           + +   + + G + ++ ++  ++D LCK  +++ A  +++  + +G +  DV  YNV+ N
Sbjct: 434 ITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKG-YHLDVKMYNVMVN 492

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           G C     ++AL ++ +M D G  P+  TY  +++  F   + ++A +   EM
Sbjct: 493 GLCKEGLFDEALSLVSKMEDNGCIPDAVTYETLVRALFENDKNDKAVKLLREM 545


>gi|297723047|ref|NP_001173887.1| Os04g0351333 [Oryza sativa Japonica Group]
 gi|255675359|dbj|BAH92615.1| Os04g0351333 [Oryza sativa Japonica Group]
          Length = 740

 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 117/434 (26%), Positives = 208/434 (47%), Gaps = 48/434 (11%)

Query: 101 HSP---SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRA 157
           HSP    +++  ID   R+        +V R+    LGP   ++++I   +V  G+ D+A
Sbjct: 9   HSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYSLIY-GFVKDGEVDKA 67

Query: 158 VKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANG 216
             +FL M E G    +   N+I+  LCK K+++KA ++  K+       D+ +Y++I +G
Sbjct: 68  HCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDG 127

Query: 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK------- 269
            C  K  +KA  VL++MV+ G  PN  TYN ++ GY  +G   E+ R F +M        
Sbjct: 128 LCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPT 187

Query: 270 ------------------KRKC----------EIDVVTYTTIVHGFGVVGE--IKRARNV 299
                             + KC          + D+++Y+T++HG+    +  +    N+
Sbjct: 188 VDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNI 247

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
           F+ M+  G+ P+   +N +I    +   ++ A+L+FE+M  KG +P++ T+  VI  LC 
Sbjct: 248 FNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCR 307

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF-EKMGSGVCLPNLD 418
            G ++ AL     M D    P+   Y  LI+  C+ GE+ +  EL  E M   +  P + 
Sbjct: 308 IGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVK 367

Query: 419 TYNILISSMFVRKKSDDLLVAGKLLIEM-VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
            ++ +I+++    +    +  GK +++M V  G  P   TFN ++ G  L+GN   A  +
Sbjct: 368 YFSSIINNLCKEGR----VAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFAL 423

Query: 478 LRLQSRCGRLPRQF 491
           L   +  G  P  +
Sbjct: 424 LDAMASIGIEPNCY 437



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 110/468 (23%), Positives = 190/468 (40%), Gaps = 89/468 (19%)

Query: 102 SPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           +P  F ++  ID   + +       ++ +M      P   T+  +   Y  +G  + +V+
Sbjct: 115 APDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVR 174

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGW 217
           +F  M   G   ++++ N+ +  L K  +  +A  +F   V +G  K D+ISY+ + +G+
Sbjct: 175 VFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGP-KPDIISYSTMLHGY 233

Query: 218 ------CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
                 CL    N    +   M+ +G+ PN   +NI++  Y R G +++A   F +M+ +
Sbjct: 234 ATATDSCLADVHN----IFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNK 289

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV---------- 321
               D VT+ T++     +G +  A + F+ MV+ GV PS A Y  +IQ           
Sbjct: 290 GMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKA 349

Query: 322 --------------------------LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
                                     LCK+  V     + + MV  G  PN  T+N ++ 
Sbjct: 350 KELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLME 409

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
           G C  G ME A   +  M     EPN   Y  L+  +C  G I+  L +F  M      P
Sbjct: 410 GYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKP 469

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG------------------------- 450
               Y+I++  +F  +++     A K+  EM++ G                         
Sbjct: 470 TSVLYSIILHGLFQARRTT---AAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEAN 526

Query: 451 -------FMPRKF---TFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
                   M  KF   TFN V++ +  +G +  AKE+    S  G +P
Sbjct: 527 MLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVP 574



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 166/354 (46%), Gaps = 10/354 (2%)

Query: 116 LRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS 175
           L D   ++ L   M +  + P +  F I+   Y   G  D+A+ IF  M   G      +
Sbjct: 241 LADVHNIFNL---MLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVT 297

Query: 176 FNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           F T++  LC+  +++ A + F   V  G   ++ + Y  +  G C      KA E++ EM
Sbjct: 298 FATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAV-YGCLIQGCCNHGELVKAKELISEM 356

Query: 234 VDRGL-NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           +++ +  P +  ++ ++    + G++ E       M +     +VVT+ +++ G+ +VG 
Sbjct: 357 MNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGN 416

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           ++ A  + D M + G+ P+   Y  ++   CK   +++A+ VF +M+ KG  P S  Y++
Sbjct: 417 MEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSI 476

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           ++ GL        A +    M +     ++ TY +++   C     +    L EK+ +  
Sbjct: 477 ILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMN 536

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
              ++ T+NI+IS+MF   +  +   A +L   +   G +P   T++ ++  L+
Sbjct: 537 VKFDIITFNIVISAMFKVGRRQE---AKELFDAISTYGLVPNIQTYSMMITNLI 587



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 165/380 (43%), Gaps = 7/380 (1%)

Query: 91  NILSYHPTYAHSPSS--FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERY 148
           NI +   T   +P+   F+  I+  AR         +   M++  + P   TFA +    
Sbjct: 246 NIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSL 305

Query: 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF--KAD 206
              G+ D A+  F  M + G   S   +  ++   C   ++ KA  L      K      
Sbjct: 306 CRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPG 365

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           V  ++ I N  C   R  +  +++  MV  G  PN+ T+N +++GY   G +EEA+    
Sbjct: 366 VKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLD 425

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
            M     E +   Y T+V G+   G I  A  VF  M++ GV P+   Y+ ++  L +  
Sbjct: 426 AMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQAR 485

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
               A  +F EM+  G   +  TY VV+ GLC     + A   + ++     + ++ T+N
Sbjct: 486 RTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFN 545

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
           I+I      G  +   ELF+ + +   +PN+ TY+++I+++   +  ++   A  L I +
Sbjct: 546 IVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEE---ADNLFISV 602

Query: 447 VDRGFMPRKFTFNRVLNGLL 466
              G        N ++  LL
Sbjct: 603 EKSGHASDSRLLNHIVRMLL 622



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 129/271 (47%), Gaps = 1/271 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   TF  + E Y   G  + A  +  +M   G   +   + T++D  CK  +++ A  +
Sbjct: 399 PNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTV 458

Query: 196 FK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F+ +     K   + Y++I +G    +RT  A ++  EM++ G   ++ TY +VL G  R
Sbjct: 459 FRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCR 518

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
               +EA     ++     + D++T+  ++     VG  + A+ +FD +   G++P++ T
Sbjct: 519 NNCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQT 578

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y+ MI  L K++S E A  +F  +   G+  +S   N ++R L +  E+ +A  ++  + 
Sbjct: 579 YSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIVRMLLNKAEVAKASNYLSIIG 638

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           ++       T ++L   F   G+    ++L 
Sbjct: 639 ENNLTLEASTISLLASLFSREGKYREHIKLL 669


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 105/350 (30%), Positives = 173/350 (49%), Gaps = 8/350 (2%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
           +RL        L H+M    L P   T+  +       G+   A+KIF  M  HG   + 
Sbjct: 349 SRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANT 408

Query: 174 NSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
            ++N I+  LC    +EKA  LF K+ +      V++YN + NG+      N A  +L  
Sbjct: 409 QTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDL 468

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M + G  P+  TYN ++ G+ + G++E A  +F EM +     + V+YT ++ G    G+
Sbjct: 469 MKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGK 528

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           +  A ++   M   G  P+V +YNA+I  L K++    A  + ++MV +G +PN  TY  
Sbjct: 529 VDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTT 588

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           +I GLC  G  + A +    M+  +C PN+ TY+ LI   C  G+ +      E+M    
Sbjct: 589 LIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEA----ERMSEIG 644

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           C P LDTY+ L+S +  + +      A +L+ +M +RGF P +  +  +L
Sbjct: 645 CEPTLDTYSTLVSGLCRKGR---FYEAEQLVKDMKERGFCPDREIYYSLL 691



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 178/366 (48%), Gaps = 4/366 (1%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            L  +M +  + P+  TF  +       GK   A  I   + ++     + ++ +++   
Sbjct: 184 NLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGH 243

Query: 184 CKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           C+ + ++ A+ +F ++ +     + ++Y+ + NG C   R ++AL++L+EM+++G+ P +
Sbjct: 244 CRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTV 303

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TY + +         EEA      MKKR C  +V TYT ++ G   +G+++ A  ++  
Sbjct: 304 YTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHK 363

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M+  G++P+  TYNA+I  LC       A+ +F  M G G + N+ TYN +I+GLC  G+
Sbjct: 364 MLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGD 423

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           +E+A+    +M      P V TYN LI  +   G +     L + M    C P+  TYN 
Sbjct: 424 IEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNE 483

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           L+S      K   L  A     EMV+ G  P   ++  +++G    G   +A  +L+   
Sbjct: 484 LVSGF---SKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRME 540

Query: 483 RCGRLP 488
             G  P
Sbjct: 541 EMGCNP 546



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/365 (28%), Positives = 167/365 (45%), Gaps = 8/365 (2%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           LV RMK     P  +T+  +       GK + A+ ++  M + G   +  ++N +++ LC
Sbjct: 325 LVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELC 384

Query: 185 KEKKVEKAYNLFKVFRGKFK-ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
              +   A  +F    G    A+  +YN I  G CL     KA+ + ++M+  G  P + 
Sbjct: 385 VGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVV 444

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN ++ GY   G +  A R    MK+  CE D  TY  +V GF   G+++ A   F  M
Sbjct: 445 TYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEM 504

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           V  G+ P+  +Y A+I    K   V+ A+ + + M   G  PN  +YN VI GL      
Sbjct: 505 VECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRF 564

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             A +   +M +    PNV TY  LI   C  G  +   ++F  M    CLPNL TY+ L
Sbjct: 565 SEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSL 624

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I  +    K+D+          M + G  P   T++ +++GL   G    A+++++    
Sbjct: 625 IYGLCQEGKADEAE-------RMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKE 677

Query: 484 CGRLP 488
            G  P
Sbjct: 678 RGFCP 682



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 176/362 (48%), Gaps = 4/362 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  I++ ++    R    ++ ++    L P   T+  +   +      D A  +F  M
Sbjct: 200 TFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRM 259

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
            + GC  +  +++T+++ LC E +V++A ++  ++     +  V +Y +     C ++  
Sbjct: 260 VKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHE 319

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A+E++  M  RG  PN+ TY  ++ G  R G++E A   + +M K     + VTY  +
Sbjct: 320 EEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNAL 379

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++   V G    A  +F  M   G L +  TYN +I+ LC    +E A+++FE+M+  G 
Sbjct: 380 INELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGP 439

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
           +P   TYN +I G    G +  A   +  MK++ CEP+  TYN L+  F   G++E    
Sbjct: 440 LPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASF 499

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
            F++M      PN  +Y  LI       K D   +A  LL  M + G  P   ++N V+N
Sbjct: 500 YFQEMVECGLNPNPVSYTALIDGHSKDGKVD---IALSLLKRMEEMGCNPNVESYNAVIN 556

Query: 464 GL 465
           GL
Sbjct: 557 GL 558



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 109/406 (26%), Positives = 183/406 (45%), Gaps = 19/406 (4%)

Query: 87  LHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAE 146
           + FF  +S  P Y H+ + F   ++   R R +                P      ++ +
Sbjct: 92  IQFFYWISKRPFYKHNMNCFISMLNRLVRDRVF---------------APADHIRILMIK 136

Query: 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKA 205
              +  +  R       +   G   SL S NT+L  L K + VE A NL+K +     + 
Sbjct: 137 ACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQP 196

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
            ++++N + N      +  +A  +L ++    L+P++ TY  ++ G+ R   ++ A+  F
Sbjct: 197 SLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVF 256

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
             M K  C+ + VTY+T+++G    G +  A ++ + M+  G+ P+V TY   I  LC  
Sbjct: 257 DRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAI 316

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
           +  E AI +   M  +G  PN  TY  +I GL   G++E A+    +M  +   PN  TY
Sbjct: 317 EHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTY 376

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           N LI   C  G     L++F  M     L N  TYN +I  + +     D+  A  L  +
Sbjct: 377 NALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCL---GGDIEKAMVLFEK 433

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           M+  G +P   T+N ++NG L  GN   A  +L L    G  P ++
Sbjct: 434 MLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEW 479



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 184/396 (46%), Gaps = 9/396 (2%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           AL  F+ +  H + A++  +++  I       D      L  +M  +   PT  T+  + 
Sbjct: 392 ALKIFHWMEGHGSLANT-QTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLI 450

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFK 204
             Y++ G  + A ++   M E+GC     ++N ++    K  K+E A   F+ +      
Sbjct: 451 NGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLN 510

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
            + +SY  + +G     + + AL +LK M + G NPN+ +YN V+ G  +  +  EA + 
Sbjct: 511 PNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKI 570

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
             +M ++    +V+TYTT++ G    G  + A  +F  M     LP++ TY+++I  LC+
Sbjct: 571 CDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQ 630

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
           +   + A    E M   G  P   TY+ ++ GLC  G    A + V  MK+    P+ + 
Sbjct: 631 EGKADEA----ERMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREI 686

Query: 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLI 444
           Y  L+   C   E++  L++F  + +     +L  Y  LI ++    K+  +  A  L  
Sbjct: 687 YYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALC---KAGQVEEAQALFD 743

Query: 445 EMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
            M+++ +   +  +  +++GLL  G   L  ++L +
Sbjct: 744 NMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHI 779



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 139/298 (46%), Gaps = 5/298 (1%)

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186
             M    L P   ++  + + +   GK D A+ +   M E GC  ++ S+N +++ L KE
Sbjct: 502 QEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKE 561

Query: 187 KKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
            +  +A  +  K+       +VI+Y  + +G C   RT  A ++  +M  R   PNL TY
Sbjct: 562 NRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTY 621

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           + ++ G  + G+ +EA R    M +  CE  + TY+T+V G    G    A  +   M  
Sbjct: 622 SSLIYGLCQEGKADEAER----MSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKE 677

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G  P    Y +++   CK   V++A+ +F  +  KG+  + + Y  +I  LC  G++E 
Sbjct: 678 RGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEE 737

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           A      M + E   +   + +L+      GE++  ++L   M S    PN+ TY IL
Sbjct: 738 AQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVIL 795


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 105/370 (28%), Positives = 175/370 (47%), Gaps = 39/370 (10%)

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA---------------------- 192
           D A  +++ M   G R SL +FNT++++LCK+ +V++A                      
Sbjct: 184 DLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSL 243

Query: 193 -------YNL---FKVFRGKFK----ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
                  +NL   F +F    K     + ++Y+ + NG C   R  +A+++L+EMV +G+
Sbjct: 244 ILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGI 303

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
            P + TY I L     AG   EA     +MKKR C  ++ T+T ++ G    G+ + A  
Sbjct: 304 EPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIG 363

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
           ++  M+  G++P+  TYNA+I  LC +   E A  +F+ M+  G +P++ TYN +I+  C
Sbjct: 364 LYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFC 423

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLD 418
             G++++A+    +M      PNV TYN LI  +C  G +   + L E M      P+  
Sbjct: 424 LMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAW 483

Query: 419 TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           TY  LIS      +   L  A  L   M++ G  P   T+  +++G   +     A  + 
Sbjct: 484 TYTELISGF---SRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALF 540

Query: 479 RLQSRCGRLP 488
                 G LP
Sbjct: 541 WKMVESGNLP 550



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/368 (28%), Positives = 178/368 (48%), Gaps = 4/368 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+ +MK     P  +TF  +       GK + A+ ++  M   G   +  ++N +++ LC
Sbjct: 329 LLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLC 388

Query: 185 KEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
            E + E A+ +FK  +  G   +   +YN I   +CL+    KA+ +  +M+  G +PN+
Sbjct: 389 VEGRFETAFTIFKWMLSHGSLPS-TQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNV 447

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TYN ++ GY + G +  A R    MK    + D  TYT ++ GF   G+++ A ++F G
Sbjct: 448 ITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYG 507

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M+  G+ P+  TY A+I        V++A+ +F +MV  G +P+S TYNV+I G   T  
Sbjct: 508 MMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNS 567

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           +  A  F G+M      PNV TY   I   C  G      ++F +M      PNL TY+ 
Sbjct: 568 ISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSS 627

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           LI  +    +++D  +   LL  +   G  P   T+  ++ GL   G    A +++    
Sbjct: 628 LIYGLCQEGRAEDAEMY-NLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQ 686

Query: 483 RCGRLPRQ 490
           + G  P +
Sbjct: 687 KKGLQPSE 694



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 102/411 (24%), Positives = 183/411 (44%), Gaps = 36/411 (8%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            R+++ + + + + R  +    P   T+  +   +      D A  +F  M + GC  + 
Sbjct: 216 GRVQEAKLIMSHIFRYDAY---PNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNS 272

Query: 174 NSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
            +++T+++ LC E ++E+A ++ + + +   +  V +Y +     C    +++A+E+L +
Sbjct: 273 VTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGK 332

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M  RG  PN+ T+  ++ G  R G+ E A   + +M         VTY  +++   V G 
Sbjct: 333 MKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGR 392

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
            + A  +F  M++ G LPS  TYN +I+  C    ++ A+++F++M+  G  PN  TYN 
Sbjct: 393 FETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNT 452

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           +I G C  G +  A+  +  MK +  +P+  TY  LI  F   G++E    LF  M    
Sbjct: 453 LIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHG 512

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE--------------------------- 445
             PN  TY  +I   F   K DD L     ++E                           
Sbjct: 513 ISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAE 572

Query: 446 -----MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
                MV +G +P   T+   ++GL   G  GLA +I     +    P  +
Sbjct: 573 NFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLY 623



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 145/309 (46%), Gaps = 3/309 (0%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           + T +T+   M S    P+ +T+  I + +   G   +A+ IF  M + G   ++ ++NT
Sbjct: 393 FETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNT 452

Query: 179 ILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           ++   CK+  +  A  L ++ +G   K D  +Y  + +G+    +   A  +   M++ G
Sbjct: 453 LIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHG 512

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
           ++PN  TY  ++ GYF   ++++A   F +M +        TY  ++ GF     I  A 
Sbjct: 513 ISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAE 572

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
           N    MV  G+LP+V TY + I  LC+      A  +F EM  + Y PN  TY+ +I GL
Sbjct: 573 NFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGL 632

Query: 358 CHTGEMERA--LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
           C  G  E A     + R+    CEPNV TY  L++  C  G      +L   M      P
Sbjct: 633 CQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQP 692

Query: 416 NLDTYNILI 424
           + + Y  L+
Sbjct: 693 SEEIYRALL 701



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 108/453 (23%), Positives = 179/453 (39%), Gaps = 77/453 (16%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F   I   +R   +     L H+M +  L PT  T+  +  +    G+ + A  IF  M
Sbjct: 344 TFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWM 403

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
             HG   S  ++N I+   C    ++KA  +F K+ +     +VI+YN +  G+C     
Sbjct: 404 LSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNL 463

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           N A+ +L+ M   GL P+  TY  ++ G+ R G++E A   F  M +     + VTYT I
Sbjct: 464 NNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAI 523

Query: 284 V-----------------------------------HGFGVVGEIKRARNVFDGMVNGGV 308
           +                                    GF     I  A N    MV  G+
Sbjct: 524 IDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGL 583

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN---------------------- 346
           LP+V TY + I  LC+      A  +F EM  + Y PN                      
Sbjct: 584 LPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEM 643

Query: 347 ---------------STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
                            TY  +++GLC  G    A + V  M+    +P+ + Y  L+  
Sbjct: 644 YNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIG 703

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
            C   ++E  L +F  M +     +L  Y  LI ++    K + +  A  +   M+++ +
Sbjct: 704 ECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALC---KENFIEEAQCIFQTMLEKHW 760

Query: 452 MPRKFTFNRVLNGLLLIGNQGLAKEILR-LQSR 483
              +  +  +L+GLL  G   L  ++L  ++SR
Sbjct: 761 NSDEVVWTVLLDGLLKEGETDLCLKLLHVMESR 793



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 134/307 (43%), Gaps = 45/307 (14%)

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM-KKRKCEID 276
           C V   N+ +       DR   P      +++K     G+++   +F  E+  K      
Sbjct: 113 CFVSMLNRLVR------DRLFAPADHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGYT 166

Query: 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV-- 334
           + ++TT++   G    +  AR+++  M+N G+ PS+ T+N MI +LCKK  V+ A L+  
Sbjct: 167 LCSFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMS 226

Query: 335 ---------------------------------FEEMVGKGYMPNSTTYNVVIRGLCHTG 361
                                            F+ MV  G  PNS TY+ +I GLC  G
Sbjct: 227 HIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEG 286

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
            +E A++ +  M     EP V TY I +   CDAG     +EL  KM    C+PN+ T+ 
Sbjct: 287 RLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFT 346

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481
            LIS +    +     +A  L  +M+  G +P   T+N ++N L + G    A  I +  
Sbjct: 347 ALISGL---SRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWM 403

Query: 482 SRCGRLP 488
              G LP
Sbjct: 404 LSHGSLP 410



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 134/303 (44%), Gaps = 3/303 (0%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           +L + M    + P   T+  I + Y +  K D A+ +F  M E G   S  ++N ++   
Sbjct: 503 SLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGF 562

Query: 184 CKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
            K   + +A N   K+ +     +VI+Y    +G C   RT  A ++  EM  R   PNL
Sbjct: 563 SKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNL 622

Query: 243 TTYNIVLKGYFRAGQIEEA--WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
            TY+ ++ G  + G+ E+A  +     +    CE +V TYTT+V G    G    A  + 
Sbjct: 623 YTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLV 682

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
             M   G+ PS   Y A++   CK   VE+A+ +F  M   G+  + + Y  +I  LC  
Sbjct: 683 VSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKE 742

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
             +E A      M +     +   + +L+      GE +  L+L   M S  C  N  TY
Sbjct: 743 NFIEEAQCIFQTMLEKHWNSDEVVWTVLLDGLLKEGETDLCLKLLHVMESRNCTLNFQTY 802

Query: 421 NIL 423
            +L
Sbjct: 803 VML 805



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 113/266 (42%), Gaps = 38/266 (14%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           +M    L P   T+    +     G+   A KIF  M +     +L ++++++  LC+E 
Sbjct: 577 KMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEG 636

Query: 188 KVEKA--YNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
           + E A  YNL  ++     + +V +Y  +  G C   R  +A +++  M  +GL P+   
Sbjct: 637 RAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEI 696

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           Y  +L G               E K  K E                     A N+F  M 
Sbjct: 697 YRALLIG---------------ECKNLKVE--------------------SALNIFYSMD 721

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
             G    ++ Y A+I  LCK++ +E A  +F+ M+ K +  +   + V++ GL   GE +
Sbjct: 722 TLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVVWTVLLDGLLKEGETD 781

Query: 365 RALEFVGRMKDDECEPNVQTYNILIR 390
             L+ +  M+   C  N QTY +L R
Sbjct: 782 LCLKLLHVMESRNCTLNFQTYVMLAR 807


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 106/354 (29%), Positives = 180/354 (50%), Gaps = 10/354 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+ I+ E   +     +A+K+   M   GC+  + ++N +++ +CKE ++++A   
Sbjct: 14  PDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKF 73

Query: 196 FKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
                    + +VI++N+I    C   R   A ++L EMV +G +P++ T+NI++    R
Sbjct: 74  LNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCR 133

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G +  A     +M    C  + ++Y  ++HGF    ++ RA    + MV+ G  P + T
Sbjct: 134 KGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVT 193

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN M+  LCK   V+ A+ +  ++  KG  P   TYN VI GL   G+ ++A+E +  M+
Sbjct: 194 YNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMR 253

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISSMFVRKKS 433
               +P+V TY+ LI      G++E  ++ F  + G GV  PN  TYN   S MF   K+
Sbjct: 254 GKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGV-KPNAFTYN---SIMFGLCKA 309

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR-CGR 486
                A   L  M+ +G  P + ++  ++ G   I N+GLAKE L L +  C R
Sbjct: 310 QQTDRAIDFLAYMISKGCKPTEVSYTILIEG---IANEGLAKEALELLNELCSR 360



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 151/286 (52%), Gaps = 1/286 (0%)

Query: 126 VHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185
           ++ M S    P   T  II     S G+   A K+   M   GC  S+ +FN +++ LC+
Sbjct: 74  LNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCR 133

Query: 186 EKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
           +  + +A ++  K+       + +SYN + +G+C  K+ ++A++ L+ MV RG  P++ T
Sbjct: 134 KGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVT 193

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           YN +L    + G+++ A     ++  + C   ++TY T++ G   VG+  +A  +   M 
Sbjct: 194 YNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMR 253

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
             G+ P V TY+++I  L ++  VE AI  F ++ G G  PN+ TYN ++ GLC   + +
Sbjct: 254 GKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTD 313

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           RA++F+  M    C+P   +Y ILI    + G  +  LEL  ++ S
Sbjct: 314 RAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNELCS 359



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 154/301 (51%), Gaps = 4/301 (1%)

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTN 224
           E  C   + ++  +++  C E  V +A  L      +  K DV++YNV+ NG C   R +
Sbjct: 9   EKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLD 68

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           +A++ L  M   G  PN+ T+NI+L+     G+  +A +   EM ++ C   VVT+  ++
Sbjct: 69  EAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILI 128

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
           +     G + RA ++ + M   G  P+  +YN ++   CK+  ++ AI   E MV +G  
Sbjct: 129 NFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCY 188

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           P+  TYN ++  LC  G+++ A+E + ++    C P + TYN +I      G+ ++ +EL
Sbjct: 189 PDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVEL 248

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
             +M      P++ TY+ LI+ +    K ++   A K   ++   G  P  FT+N ++ G
Sbjct: 249 LHEMRGKGLKPDVITYSSLIAGLSREGKVEE---AIKFFHDVEGFGVKPNAFTYNSIMFG 305

Query: 465 L 465
           L
Sbjct: 306 L 306



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 146/293 (49%), Gaps = 8/293 (2%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYR--TVWTLVHRMKSLSLGPTQKTFA 142
           +A+ F N +   P+Y   P+   H I L +     R      L+  M      P+  TF 
Sbjct: 69  EAIKFLNSM---PSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFN 125

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--R 200
           I+       G   RA+ I   M  HGC  +  S+N +L   CKEKK+++A    ++   R
Sbjct: 126 ILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSR 185

Query: 201 GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
           G +  D+++YN +    C   + + A+E+L ++  +G +P L TYN V+ G  + G+ ++
Sbjct: 186 GCY-PDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQ 244

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
           A     EM+ +  + DV+TY++++ G    G+++ A   F  +   GV P+  TYN+++ 
Sbjct: 245 AVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMF 304

Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
            LCK    + AI     M+ KG  P   +Y ++I G+ + G  + ALE +  +
Sbjct: 305 GLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNEL 357



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 163/331 (49%), Gaps = 4/331 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M S    P   T+ ++       G+ D A+K   SM  +G + ++ + N IL  +C
Sbjct: 38  LLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMC 97

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
              +   A  L  ++ R      V+++N++ N  C      +A+++L++M   G  PN  
Sbjct: 98  STGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSL 157

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           +YN +L G+ +  +++ A ++   M  R C  D+VTY T++      G++  A  + + +
Sbjct: 158 SYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQL 217

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            + G  P + TYN +I  L K    + A+ +  EM GKG  P+  TY+ +I GL   G++
Sbjct: 218 SSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKV 277

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           E A++F   ++    +PN  TYN ++   C A + +R ++    M S  C P   +Y IL
Sbjct: 278 EEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTIL 337

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
           I  +     + + L   +LL E+  RG + +
Sbjct: 338 IEGIANEGLAKEAL---ELLNELCSRGVVKK 365



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 135/252 (53%), Gaps = 3/252 (1%)

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
           +EVL   +++   P++ TY I+++       + +A +   EM  R C+ DVVTY  +V+G
Sbjct: 1   MEVLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNG 60

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
               G +  A    + M + G  P+V T+N +++ +C      +A  +  EMV KG  P+
Sbjct: 61  MCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPS 120

Query: 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
             T+N++I  LC  G + RA++ + +M    C PN  +YN L+  FC   +++R ++  E
Sbjct: 121 VVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLE 180

Query: 407 KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
            M S  C P++ TYN +++++    K D    A +LL ++  +G  P   T+N V++GL 
Sbjct: 181 IMVSRGCYPDIVTYNTMLTALCKDGKVD---AAVELLNQLSSKGCSPVLITYNTVIDGLS 237

Query: 467 LIGNQGLAKEIL 478
            +G    A E+L
Sbjct: 238 KVGKTDQAVELL 249



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 109/219 (49%), Gaps = 3/219 (1%)

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
           +++C  DV+TYT ++        + +A  + D M + G  P V TYN ++  +CK+  ++
Sbjct: 9   EKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLD 68

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
            AI     M   G  PN  T+N+++R +C TG    A + +  M    C P+V T+NILI
Sbjct: 69  EAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILI 128

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
            + C  G + R +++ EKM +  C PN  +YN L+      KK D    A + L  MV R
Sbjct: 129 NFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDR---AIQYLEIMVSR 185

Query: 450 GFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           G  P   T+N +L  L   G    A E+L   S  G  P
Sbjct: 186 GCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSP 224



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 144/297 (48%), Gaps = 4/297 (1%)

Query: 63  PSLHWTPQLVDQ-IIKRLWNHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDY 119
           PS    P ++   II R      + +    +L+       SPS  +F+  I+   R    
Sbjct: 78  PSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCRKGLL 137

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
                ++ +M +    P   ++  +   +    K DRA++    M   GC   + ++NT+
Sbjct: 138 GRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTM 197

Query: 180 LDLLCKEKKVEKAYNLFKVFRGKFKADV-ISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           L  LCK+ KV+ A  L      K  + V I+YN + +G   V +T++A+E+L EM  +GL
Sbjct: 198 LTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGL 257

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
            P++ TY+ ++ G  R G++EEA +FF +++    + +  TY +I+ G     +  RA +
Sbjct: 258 KPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAID 317

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
               M++ G  P+  +Y  +I+ +  +   + A+ +  E+  +G +  S+   VV+R
Sbjct: 318 FLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNELCSRGVVKKSSAEQVVVR 374



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 110/235 (46%), Gaps = 3/235 (1%)

Query: 90  FNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLG--PTQKTFAIIAER 147
            +IL   PT+  +P+S  +   L    ++ +    + +    +S G  P   T+  +   
Sbjct: 141 IDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTA 200

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKAD 206
               GK D AV++   +   GC   L ++NT++D L K  K ++A  L    RGK  K D
Sbjct: 201 LCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPD 260

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           VI+Y+ +  G     +  +A++   ++   G+ PN  TYN ++ G  +A Q + A  F  
Sbjct: 261 VITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLA 320

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
            M  + C+   V+YT ++ G    G  K A  + + + + GV+   +    ++++
Sbjct: 321 YMISKGCKPTEVSYTILIEGIANEGLAKEALELLNELCSRGVVKKSSAEQVVVRL 375



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 3/158 (1%)

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           V +  + K   P+  TY ++I   C    + +A++ +  M    C+P+V TYN+L+   C
Sbjct: 3   VLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMC 62

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
             G ++  ++    M S    PN+ T+NI++ SM    +  D   A KLL EMV +G  P
Sbjct: 63  KEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMD---AEKLLTEMVRKGCSP 119

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
              TFN ++N L   G  G A +IL      G  P   
Sbjct: 120 SVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSL 157


>gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa]
 gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 150/294 (51%), Gaps = 2/294 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   TF I+       G  DRA ++F  M   GC   + ++NT+++ LCK  +V++   L
Sbjct: 176 PDTWTFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCEL 235

Query: 196 FKVF--RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
           FK    R     D+++Y  I +G+C   +  +A  + +EM+  G+ PN+ T+N+++ G+ 
Sbjct: 236 FKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFG 295

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
           + G I EA   + +M    C  DVVT+T+++ G+   G++      ++ M    V P+V 
Sbjct: 296 KIGNIAEAEAMYRKMAYFDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVY 355

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           TY  +I  LCK++ +  A     ++     +P    YN VI G C  G ++     +  M
Sbjct: 356 TYAVLINALCKENRLNEARDFLGQIKNSSIIPKPFMYNPVIDGFCKAGNVDEGNVILKEM 415

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           ++  C+P+  T+ ILI   C  G +   + +F +M +  C P+  T N LIS +
Sbjct: 416 EEKRCDPDKVTFTILIIGHCVKGRMFEAINIFNRMLATRCAPDNITVNSLISCL 469



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 104/425 (24%), Positives = 185/425 (43%), Gaps = 41/425 (9%)

Query: 63  PSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTV 122
           P    TP +  ++IKR +N+      F      +    H  S+++  +    ++  +  V
Sbjct: 34  PDRQLTPLIAFEVIKR-FNNPKVGFKFLEFSRLNLNVNHCYSTYNLLMRSLCQMGHHDLV 92

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
             +   M S    P  K    +      A   D   K+   +     R +   +N +L +
Sbjct: 93  NIVFDYMGSDGHLPDSKLLGFLVTWMAQASDFDMVKKLLAEVQGKEVRINSFVYNNLLSV 152

Query: 183 LCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           L K+ +V +A  LFK +                   LV ++                P+ 
Sbjct: 153 LVKQNQVHEAIYLFKEY-------------------LVMQSP---------------PDT 178

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            T+NI+++G  R G ++ A+  F +M+   C  DVVTY T+++G     E++R   +F  
Sbjct: 179 WTFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELFKE 238

Query: 303 MVN-GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
           + +     P + TY ++I   CK   ++ A  +FEEM+  G  PN  T+NV+I G    G
Sbjct: 239 IQSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIG 298

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
            +  A     +M   +C  +V T+  LI  +C AG++  GL+ +  M +    P + TY 
Sbjct: 299 NIAEAEAMYRKMAYFDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYA 358

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR-- 479
           +LI+++    K + L  A   L ++ +   +P+ F +N V++G    GN      IL+  
Sbjct: 359 VLINALC---KENRLNEARDFLGQIKNSSIIPKPFMYNPVIDGFCKAGNVDEGNVILKEM 415

Query: 480 LQSRC 484
            + RC
Sbjct: 416 EEKRC 420



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 86/185 (46%), Gaps = 9/185 (4%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  ID   ++ +      +  +M          TF  + + Y  AG+ +  +K +  M
Sbjct: 286 TFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVM 345

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVI-----SYNVIANGWCL 219
                  ++ ++  +++ LCKE ++ +A +    F G+ K   I      YN + +G+C 
Sbjct: 346 KTRNVSPTVYTYAVLINALCKENRLNEARD----FLGQIKNSSIIPKPFMYNPVIDGFCK 401

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
               ++   +LKEM ++  +P+  T+ I++ G+   G++ EA   F  M   +C  D +T
Sbjct: 402 AGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGRMFEAINIFNRMLATRCAPDNIT 461

Query: 280 YTTIV 284
             +++
Sbjct: 462 VNSLI 466


>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 917

 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 109/389 (28%), Positives = 195/389 (50%), Gaps = 19/389 (4%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           S ++  H   L+ +   +     L + M  + + P   T +++ +     GK   A K+ 
Sbjct: 495 SYTTLIHGFCLSGK---WEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLL 551

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLV 220
             + + GC   + +  T++  LC + ++ KA  LF K+ +     +V++   +  G C  
Sbjct: 552 EVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQS 611

Query: 221 KRTNKALEVLKEMVDR----GLN--PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
                ALE+ K M+      G+N  PN  +Y+I++ G  + G+ +EA   F EMK     
Sbjct: 612 GNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVI 671

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
            DV++YT+++HGF   G+ K A+ +F+ MV+ GV P V T++ +I +LCK+  V  A  +
Sbjct: 672 PDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANEL 731

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
            E M+ +G +PN+ TY  +++GLC    +  A +   +M+   C P+V TY  L++  C 
Sbjct: 732 LEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQ 791

Query: 395 AGEIERGLELFEKMGSGVCL------PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
            G I+  LEL +KM S          P++ +Y+I+I  +    + D+   A +L  EM  
Sbjct: 792 TGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDE---ARELFKEMKA 848

Query: 449 RGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
            G +P   ++  +++G    G    AK +
Sbjct: 849 LGVIPNVISYTSLIHGFCRSGKLEDAKHL 877



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 181/353 (51%), Gaps = 16/353 (4%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T +++ +     GK   A ++   M + GC   + +++T++  LC E ++ +A  L
Sbjct: 345 PDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWL 404

Query: 196 FKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMV-DRG-----LNPNLTTYNIV 248
           F   +    + D I+Y  +  G C     N AL++ +EM+ D G       P L +Y+I+
Sbjct: 405 FMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSII 464

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           + G  +  + +EA   F EMK +    DV++YTT++HGF + G+ ++A+ +F+ M++ G+
Sbjct: 465 IDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGI 524

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
            P V T + +I +LCKK  V  A  + E ++ +G + +  T   +++GLC    + +A +
Sbjct: 525 QPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQ 584

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV------CLPNLDTYNI 422
              +M+   C PNV T   L++  C +G I+  LEL + M S        C PN  +Y+I
Sbjct: 585 LFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSI 644

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
           +I  +    + D+   A +L  EM   G +P   ++  +++G    G    AK
Sbjct: 645 IIDGLCKCGREDE---ARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAK 694



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 120/490 (24%), Positives = 215/490 (43%), Gaps = 62/490 (12%)

Query: 41  AALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYA 100
           AA+A ++     P  +T ++  P +  +  L+D + K      ++A     ++       
Sbjct: 31  AAMAGIMRRGYIPDIVTYSIR-PDVTTSSMLIDILCKE--GKVIEANELLEVMIQRGCIL 87

Query: 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
              +       L    R     W L   M+ L   P   T+  + +     G  + A+++
Sbjct: 88  DIVTYSTLIKGLCMEHRISEATW-LFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQL 146

Query: 161 FLSM-HEHG-----CRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVI 213
              M ++ G     C+ +L S++ I+D LCK+++ ++A  LFK  + +    DVISY  +
Sbjct: 147 HQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSL 206

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTT----------------------------- 244
            +G+C   +  KA  +  EM+D G+ P++TT                             
Sbjct: 207 IHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGC 266

Query: 245 ------YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
                 Y+ ++KG     +I EA + F+ MKK  C  D + Y T++ G    G+I  A +
Sbjct: 267 ILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALH 326

Query: 299 VFDGMVNGG-------VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
           +   M+N         + P V T + +I +LCK+  V  A  + E M+ +G + +  TY+
Sbjct: 327 LHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYS 386

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
            +I+GLC    +  A      M+   C P+  TY  L++  C  G I   L+L ++M + 
Sbjct: 387 TLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLND 446

Query: 412 V------CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
                  C P L +Y+I+I  +   ++ D+   A +L  EM  +G MP   ++  +++G 
Sbjct: 447 TGRYGIKCKPTLISYSIIIDGLCKDRREDE---ARELFEEMKAQGIMPDVISYTTLIHGF 503

Query: 466 LLIGNQGLAK 475
            L G    AK
Sbjct: 504 CLSGKWEKAK 513



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 159/314 (50%), Gaps = 21/314 (6%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH----------GCRQSLNSFN 177
           +M+ L   P   T A + +    +G     +KI L +H++           C+ +  S++
Sbjct: 588 KMQKLGCMPNVVTCATLMKGLCQSGN----IKIALELHKNMLSDTSPYGINCKPNAISYS 643

Query: 178 TILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
            I+D LCK  + ++A  LFK  +      DVISY  + +G+C   +   A  +  EMVD 
Sbjct: 644 IIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDI 703

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           G+ P++TT+++++    + G++ EA      M +R C  + VTYTT+V G  +   I  A
Sbjct: 704 GVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEA 763

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV------GKGYMPNSTTY 350
             +F  M   G LP V TY  +++ LC+  +++ A+ + ++M+      G  + P+  +Y
Sbjct: 764 TQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISY 823

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           +++I GLC  G  + A E    MK     PNV +Y  LI  FC +G++E    LF +M  
Sbjct: 824 SIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVD 883

Query: 411 GVCLPNLDTYNILI 424
                N  TY+++I
Sbjct: 884 QGVQLNAVTYSVMI 897



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 144/280 (51%), Gaps = 9/280 (3%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   +++II +     G+ D A ++F  M   G    + S+ +++   C+  K + A  L
Sbjct: 637 PNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYL 696

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F ++     + DV +++V+ +  C   +  +A E+L+ M+ RG  PN  TY  ++KG   
Sbjct: 697 FNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCM 756

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG------GV 308
             +I EA + F++M+K  C  DVVTY T++ G    G IK A  +   M++         
Sbjct: 757 NDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNF 816

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
            P V +Y+ +I  LCK    + A  +F+EM   G +PN  +Y  +I G C +G++E A  
Sbjct: 817 KPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKH 876

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
               M D   + N  TY+++I  FC  G+I++   LF+KM
Sbjct: 877 LFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA--LFQKM 914



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 180/380 (47%), Gaps = 21/380 (5%)

Query: 103 PSSFDHAIDLAARLRDYRT--VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P+   ++I +    +D R      L   MK+  + P   ++  +   +  +GK ++A  +
Sbjct: 163 PTLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCL 222

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWC 218
           F  M + G +  + +   ++D+ CKE KV +A  L +V   RG    D+++Y+ +  G C
Sbjct: 223 FNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCI-LDIVTYSTLIKGLC 281

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR------K 272
           +  R ++A ++   M   G  P+   Y  ++KG  + G+I  A     EM         K
Sbjct: 282 MKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIK 341

Query: 273 C-EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
           C   DV T + ++      G++  A  + + M+  G +  + TY+ +I+ LC +  +  A
Sbjct: 342 CIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEA 401

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD------ECEPNVQTY 385
             +F  M   G  P++ TY  +++GLC TG +  AL+    M +D      +C+P + +Y
Sbjct: 402 TWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISY 461

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           +I+I   C     +   ELFE+M +   +P++ +Y  LI    +  K +    A  L  E
Sbjct: 462 SIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEK---AKCLFNE 518

Query: 446 MVDRGFMPRKFTFNRVLNGL 465
           M+D G  P   T + +++ L
Sbjct: 519 MLDVGIQPDVTTSSVLIDML 538



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 147/289 (50%), Gaps = 13/289 (4%)

Query: 91  NILSYHPTYAHS--PSSFDHAIDLAARLRDYRT--VWTLVHRMKSLSLGPTQKTFAIIAE 146
           N+LS    Y  +  P++  ++I +    +  R      L   MK+L + P   ++  +  
Sbjct: 623 NMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIH 682

Query: 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFK 204
            +  +GK   A  +F  M + G +  + +F+ ++D+LCKE KV +A  L +V   RG   
Sbjct: 683 GFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCI- 741

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
            + ++Y  +  G C+  R ++A ++  +M   G  P++ TY  ++KG  + G I+ A   
Sbjct: 742 PNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALEL 801

Query: 265 FLEMKKRKCEI------DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
             +M     +       DV++Y+ I+ G    G    AR +F  M   GV+P+V +Y ++
Sbjct: 802 HKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSL 861

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           I   C+   +E+A  +F EMV +G   N+ TY+V+I G C  G++++AL
Sbjct: 862 IHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKAL 910



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 140/319 (43%), Gaps = 53/319 (16%)

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI---------VLKGYFRAG 256
           D  ++N++ N  C VKR N+ L  +  ++ RG  P++ TY+I         ++    + G
Sbjct: 9   DSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLIDILCKEG 68

Query: 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
           ++ EA      M +R C +D+VTY+T++ G  +   I  A  +F  M   G  P   TY 
Sbjct: 69  KVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYG 128

Query: 317 AMIQVLCKKDSVENAIL-----------------------------------------VF 335
            +++ LC+  ++  A+                                          +F
Sbjct: 129 TLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELF 188

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
           +EM  +G MP+  +Y  +I G CH+G+ E+A      M D   +P+V T  +LI  FC  
Sbjct: 189 KEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKE 248

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
           G++    EL E M    C+ ++ TY+ LI  + ++ +  +   A +L + M   G  P  
Sbjct: 249 GKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISE---ATQLFMSMKKLGCRPDA 305

Query: 456 FTFNRVLNGLLLIGNQGLA 474
             +  ++ GL   G   +A
Sbjct: 306 IAYGTLMKGLCQTGKINIA 324



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 107/245 (43%), Gaps = 35/245 (14%)

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           GL P+  T+NI++       ++ E       + +R    D+VTY+               
Sbjct: 5   GLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYS--------------- 49

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
                      + P V T + +I +LCK+  V  A  + E M+ +G + +  TY+ +I+G
Sbjct: 50  -----------IRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKG 98

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV---- 412
           LC    +  A      M+   C P+  TY  L++  C  G I   L+L ++M +      
Sbjct: 99  LCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYG 158

Query: 413 --CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
             C P L +Y+I+I  +   ++ D+   A +L  EM  +G MP   ++  +++G    G 
Sbjct: 159 IKCKPTLISYSIIIDGLCKDRREDE---ARELFKEMKAQGMMPDVISYTSLIHGFCHSGK 215

Query: 471 QGLAK 475
              AK
Sbjct: 216 WEKAK 220


>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
          Length = 442

 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 182/381 (47%), Gaps = 6/381 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ++   + R YR    L+  M++    P   T+ ++ +     G  D A+++  ++
Sbjct: 44  TYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNL 103

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
             HGC+ S  ++NT+L  LC  ++   A  L  ++ R     +  ++NV+    C     
Sbjct: 104 PSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLL 163

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A+++L++M   G   N+ TYN ++ G      ++ A     +MK   C+ D+VTY T+
Sbjct: 164 QQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTL 223

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G         A  + D M   G LP   T+N +I  LC+K  + +AI VF++M  KG 
Sbjct: 224 LKGLCSAARWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGC 283

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PNS TY+ +I GL    ++++ALE    M      P+ + Y +L     D   IE  ++
Sbjct: 284 TPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPD-KIYQLLAECLNDDDTIEEAIQ 342

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
              K+      P+   YN ++  +    K++    A  ++  MV  G MP   T+  ++ 
Sbjct: 343 TVRKLQDSGISPHTVLYNAILLGLCRNGKTE---FAIDIMAYMVSSGCMPDDLTYVILIE 399

Query: 464 GLLLIGNQGLAKEIL-RLQSR 483
           GL   G    A+E+L +L SR
Sbjct: 400 GLAYEGYLNEARELLIKLCSR 420



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 156/322 (48%), Gaps = 4/322 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+  +       G+   A+ +   M   GC   + ++N +L+  CK +   +A  L
Sbjct: 5   PNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMEL 64

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             + R +    + ++YNV+ +G C     + ALE+L+ +   G  P+   YN VLKG   
Sbjct: 65  IDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCS 124

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
           A +  +A     EM +  C  +  T+  +++     G +++A  + + M   G   ++ T
Sbjct: 125 AERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVT 184

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YNA+I  LC++ +V+ A+ +  +M   G  P+  TYN +++GLC       A E +  M 
Sbjct: 185 YNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMT 244

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
            + C P+  T+N LI + C  G +   +E+F++M    C PN  TY+ +IS +    K D
Sbjct: 245 QNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLD 304

Query: 435 DLLVAGKLLIEMVDRGFMPRKF 456
             L   +L  EM  +GF P K 
Sbjct: 305 QAL---ELFNEMGHKGFNPDKI 323



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 170/373 (45%), Gaps = 5/373 (1%)

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
           R   +++  M      P   T+ I+ E         +A+++   M   GC  +  ++N +
Sbjct: 24  RDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVL 83

Query: 180 LDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           +D +C E  V+ A  L +       K   ++YN +  G C  +R   A E++ EM+    
Sbjct: 84  MDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENC 143

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
            PN  T+N+V+    R G +++A +   +M K  C  ++VTY  I++G      +  A  
Sbjct: 144 PPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMG 203

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
           +   M + G  P + TYN +++ LC      +A  + + M   G +P++ T+N +I  LC
Sbjct: 204 LLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTFNTLIGFLC 263

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLD 418
             G M  A+E   +M D  C PN  TY+ +I     A ++++ LELF +MG     P+  
Sbjct: 264 QKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPD-K 322

Query: 419 TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
            Y +L   +      D +  A + + ++ D G  P    +N +L GL   G    A +I+
Sbjct: 323 IYQLLAECL---NDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIM 379

Query: 479 RLQSRCGRLPRQF 491
                 G +P   
Sbjct: 380 AYMVSSGCMPDDL 392



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 152/326 (46%), Gaps = 8/326 (2%)

Query: 90  FNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVW----TLVHRMKSLSLGPTQKTFAIIA 145
             +L   P++   PS+ ++   L       R  W     LV  M   +  P + TF ++ 
Sbjct: 97  LELLRNLPSHGCKPSTVNYNTVLKGLCSAER--WGDADELVTEMLRENCPPNEATFNVVI 154

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFK 204
                 G   +A+++   M +HGC  ++ ++N I++ LC+++ V+ A  L    +    K
Sbjct: 155 YSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCK 214

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
            D+++YN +  G C   R   A E++  M   G  P+  T+N ++    + G + +A   
Sbjct: 215 PDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEV 274

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
           F +M  + C  + +TY+TI+ G     ++ +A  +F+ M + G  P    Y  + + L  
Sbjct: 275 FKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPD-KIYQLLAECLND 333

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
            D++E AI    ++   G  P++  YN ++ GLC  G+ E A++ +  M    C P+  T
Sbjct: 334 DDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLT 393

Query: 385 YNILIRYFCDAGEIERGLELFEKMGS 410
           Y ILI      G +    EL  K+ S
Sbjct: 394 YVILIEGLAYEGYLNEARELLIKLCS 419



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 122/251 (48%), Gaps = 3/251 (1%)

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
           + PN  TYN ++      GQ+ +A     +M  R C  DVVTY  ++         ++A 
Sbjct: 3   VQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAM 62

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
            + D M   G  P+  TYN ++  +C +  V++A+ +   +   G  P++  YN V++GL
Sbjct: 63  ELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGL 122

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
           C       A E V  M  + C PN  T+N++I   C  G +++ ++L EKM    C  N+
Sbjct: 123 CSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANI 182

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
            TYN +I+ +  ++  D    A  LL +M   G  P   T+N +L GL        A+E+
Sbjct: 183 VTYNAIINGLCEQRNVDG---AMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEEL 239

Query: 478 LRLQSRCGRLP 488
           +   ++ G LP
Sbjct: 240 MDNMTQNGCLP 250


>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
 gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
          Length = 727

 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 114/371 (30%), Positives = 177/371 (47%), Gaps = 5/371 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  I   AR         LV  M+ LS   +  T+  +    +  G   +   + + M
Sbjct: 282 TYNVVISFLAREGHLENAAKLVDSMR-LSKKASSFTYNPLITALLERGFVQKVEALQMEM 340

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRT 223
              G   +L ++N I+  L K ++VE A   F   R      D+I+YN + NG+C     
Sbjct: 341 ENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNL 400

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +AL +L ++   GL P + TYN ++ GY R G +EEA R   EM ++ C  DV TYT +
Sbjct: 401 KEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTIL 460

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++G   V  +  AR  FD M++ G+ P    YN  I           A  + E M+ KG 
Sbjct: 461 MNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVMMLKGI 520

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P++ TYNV+I GLC TG ++ A +   +M  D  +P+  TY  LI   C+ G +    +
Sbjct: 521 YPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARK 580

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           L   M S    P++ TY ILI +   R    +L  A     +M+D G  P + T+N +++
Sbjct: 581 LLNGMVSDGLQPSVVTYTILIHTCCRR---GNLYSAYGWFRKMLDVGIEPNEITYNVLIH 637

Query: 464 GLLLIGNQGLA 474
            L   G   LA
Sbjct: 638 ALCRTGRTLLA 648



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 147/305 (48%), Gaps = 2/305 (0%)

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
             +W L+  ++   L PT  T+  + + Y   G  + A ++   M E GC   + ++  +
Sbjct: 402 EALW-LLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTIL 460

Query: 180 LDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           ++   K + +  A   F     K  + D  +YN       ++  T+KA ++ + M+ +G+
Sbjct: 461 MNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVMMLKGI 520

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
            P+  TYN+++ G  + G +++A    ++M     + D +TYT ++H     G +  AR 
Sbjct: 521 YPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARK 580

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
           + +GMV+ G+ PSV TY  +I   C++ ++ +A   F +M+  G  PN  TYNV+I  LC
Sbjct: 581 LLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALC 640

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLD 418
            TG    A      M +    PN  TY +LI   C  G     + L+ +M      P+  
Sbjct: 641 RTGRTLLAYHHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYC 700

Query: 419 TYNIL 423
           T+N L
Sbjct: 701 THNAL 705



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 149/340 (43%), Gaps = 6/340 (1%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
            M+++ L P   T+  +   Y  AG    A+ +   +   G   ++ ++NT++D  C+  
Sbjct: 374 EMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLG 433

Query: 188 KVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
            +E+A  L +  V +G F  DV +Y ++ NG   V+    A E   EM+ +GL P+   Y
Sbjct: 434 GLEEARRLKEEMVEQGCFP-DVCTYTILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAY 492

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           N  +      G   +A++    M  +    D VTY  I+ G    G +K A+++   MV+
Sbjct: 493 NTRICAELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVS 552

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G+ P   TY  +I   C++  +  A  +   MV  G  P+  TY ++I   C  G +  
Sbjct: 553 DGLQPDCITYTCLIHAHCERGLLSEARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYS 612

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           A  +  +M D   EPN  TYN+LI   C  G        F +M      PN  TY +LI 
Sbjct: 613 AYGWFRKMLDVGIEPNEITYNVLIHALCRTGRTLLAYHHFHEMLERGLAPNKYTYTLLID 672

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
                    D   A +L  EM   G  P   T N +  G 
Sbjct: 673 GNCREGNWAD---AIRLYFEMHQNGIPPDYCTHNALFKGF 709



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 138/300 (46%), Gaps = 42/300 (14%)

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR--KCEIDVVT 279
           R +    V +EM+   + P + TYN +L  + + G+ +EA     EM+ +   C ++ VT
Sbjct: 223 RWDDVRAVYREMLQLEIEPTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGCLLNDVT 282

Query: 280 YTTIVHGFGVVGEIKRARNVFDG----------------------------------MVN 305
           Y  ++      G ++ A  + D                                   M N
Sbjct: 283 YNVVISFLAREGHLENAAKLVDSMRLSKKASSFTYNPLITALLERGFVQKVEALQMEMEN 342

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G++P++ TYNA+I  L K + VE A L F EM   G +P+  TYN ++ G C  G ++ 
Sbjct: 343 EGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKE 402

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           AL  +G ++     P V TYN LI  +C  G +E    L E+M    C P++ TY IL++
Sbjct: 403 ALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMN 462

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA---KEILRLQS 482
                 K  +L +A +   EM+ +G  P  F +N  +   L++G+   A   +E++ L+ 
Sbjct: 463 G---SHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVMMLKG 519



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 146/352 (41%), Gaps = 40/352 (11%)

Query: 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILD---------------------------- 181
            A + D    ++  M +     ++ ++NT+LD                            
Sbjct: 220 DAARWDDVRAVYREMLQLEIEPTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGCLLN 279

Query: 182 ---------LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
                     L +E  +E A  L    R   KA   +YN +           K   +  E
Sbjct: 280 DVTYNVVISFLAREGHLENAAKLVDSMRLSKKASSFTYNPLITALLERGFVQKVEALQME 339

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M + G+ P L TYN ++ G  ++ Q+E A   F EM+      D++TY ++++G+   G 
Sbjct: 340 MENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGN 399

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           +K A  +   +   G+ P+V TYN +I   C+   +E A  + EEMV +G  P+  TY +
Sbjct: 400 LKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTI 459

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           ++ G      +  A EF   M     +P+   YN  I      G+  +  +L E M    
Sbjct: 460 LMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVMMLKG 519

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
             P+  TYN++I  +    K+ +L  A  L ++MV  G  P   T+  +++ 
Sbjct: 520 IYPDTVTYNVIIDGLC---KTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHA 568



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 93/194 (47%), Gaps = 6/194 (3%)

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM--VGKGYMPNSTTYNVVI 354
           R V+  M+   + P++ TYN ++    K+   + A ++ +EM   G G + N  TYNVVI
Sbjct: 228 RAVYREMLQLEIEPTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGCLLNDVTYNVVI 287

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
             L   G +E A + V  M+  + + +  TYN LI    + G +++   L  +M +   +
Sbjct: 288 SFLAREGHLENAAKLVDSMRLSK-KASSFTYNPLITALLERGFVQKVEALQMEMENEGIM 346

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           P L TYN +I  +    KS+ +  A     EM   G +P   T+N +LNG    GN   A
Sbjct: 347 PTLVTYNAIIHGLL---KSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEA 403

Query: 475 KEILRLQSRCGRLP 488
             +L    R G  P
Sbjct: 404 LWLLGDLRRAGLAP 417



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 6/162 (3%)

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           GV P V   N +++VL      ++   V+ EM+     P   TYN ++      G  + A
Sbjct: 203 GVAPDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLDSFLKEGRKDEA 262

Query: 367 LEFVGRMKDD--ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
              +  M+     C  N  TYN++I +    G +E   +L + M       +  TYN LI
Sbjct: 263 SMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSMRLSKKASSF-TYNPLI 321

Query: 425 SSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
           +++  R     +     L +EM + G MP   T+N +++GLL
Sbjct: 322 TALLERGFVQKV---EALQMEMENEGIMPTLVTYNAIIHGLL 360


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 172/338 (50%), Gaps = 4/338 (1%)

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKAD 206
           +    + D A ++   M          ++N ++  LC   K++ A  +  ++     +  
Sbjct: 164 FCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDNCQPT 223

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           VI+Y ++     L    ++AL++L EM+ RGL P++ TYN +++G  + G ++ A+    
Sbjct: 224 VITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIR 283

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
            ++ + CE DV++Y  ++      G+ +    +   M +    P+V TY+ +I  LC+  
Sbjct: 284 NLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDG 343

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            +E A+ + + M  KG  P++ +Y+ +I   C  G ++ A+EF+  M  D C P++  YN
Sbjct: 344 KIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYN 403

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            ++   C  G+ ++ LE+F K+G   C PN  +YN + S+++    S D + A  +++EM
Sbjct: 404 TVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALW---SSGDKIRALHMILEM 460

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484
           V  G  P + T+N +++ L   G    A E+L     C
Sbjct: 461 VSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSC 498



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 181/367 (49%), Gaps = 12/367 (3%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           PT  T+ I+ E  +  G  D A+K+   M   G +  + ++NTI+  +CKE  V++A+ +
Sbjct: 222 PTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEM 281

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            +    K  + DVISYN++        +  +  +++ +M     +PN+ TY+I++    R
Sbjct: 282 IRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCR 341

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G+IEEA      MK++    D  +Y  ++  F   G +  A    + M++ G LP +  
Sbjct: 342 DGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVN 401

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN ++  LCK    + A+ +F ++   G  PNS++YN +   L  +G+  RAL  +  M 
Sbjct: 402 YNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMV 461

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
            +  +P+  TYN +I   C  G +++  EL   M S    P++ TYNI++       + +
Sbjct: 462 SNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIE 521

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG----LAKEILRLQS----RCGR 486
           D   A  +L  MV  G  P + T+  ++ G+   G +     LA +++R+ +       R
Sbjct: 522 D---AIDVLDSMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRINAISEYSFKR 578

Query: 487 LPRQFKL 493
           L R F L
Sbjct: 579 LHRTFPL 585



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 159/321 (49%), Gaps = 2/321 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M S  L P   T+  I       G  DRA ++  ++   GC   + S+N +L  L 
Sbjct: 246 LLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALL 305

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            + K E+   L  K+F  K   +V++Y+++    C   +  +A+ +LK M ++GL P+  
Sbjct: 306 NQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAY 365

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           +Y+ ++  + R G+++ A  F   M    C  D+V Y T++      G+  +A  +F  +
Sbjct: 366 SYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKL 425

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G  P+ ++YN M   L        A+ +  EMV  G  P+  TYN +I  LC  G +
Sbjct: 426 GEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMV 485

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           ++A E +  M+  E  P+V TYNI++  FC A  IE  +++ + M    C PN  TY +L
Sbjct: 486 DKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVL 545

Query: 424 ISSM-FVRKKSDDLLVAGKLL 443
           I  + F   +++ + +A  L+
Sbjct: 546 IEGIGFAGYRAEAMELANDLV 566



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/355 (27%), Positives = 173/355 (48%), Gaps = 17/355 (4%)

Query: 131 SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG-------CRQSLNSFNTILDLL 183
           S SLG        I  R   +G    ++ +  +M   G       C + +  F T+    
Sbjct: 78  SQSLGFRDTQMLKIFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTL---- 133

Query: 184 CKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
              + V KA  + ++     + DV +YN + NG+C + R + A  VL  M  +  +P+  
Sbjct: 134 ---RNVPKAVRVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTV 190

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYNI++      G+++ A +   ++    C+  V+TYT ++    + G +  A  + D M
Sbjct: 191 TYNIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEM 250

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           ++ G+ P + TYN +I+ +CK+  V+ A  +   +  KG  P+  +YN+++R L + G+ 
Sbjct: 251 LSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKW 310

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           E   + + +M  ++C+PNV TY+ILI   C  G+IE  + L + M      P+  +Y+ L
Sbjct: 311 EEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPL 370

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           I++ F R+   D  VA + L  M+  G +P    +N VL  L   G    A EI 
Sbjct: 371 IAA-FCREGRLD--VAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIF 422



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 145/298 (48%), Gaps = 37/298 (12%)

Query: 225 KALEVLKEMVDRGLNPNLT----------------------------------TYNIVLK 250
           ++L +L+ MV +G NP++                                    YN ++ 
Sbjct: 103 ESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVMEILEKFGQPDVFAYNALIN 162

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
           G+ +  +I++A R    M+ +    D VTY  ++      G++  A  V D +++    P
Sbjct: 163 GFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDNCQP 222

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           +V TY  +I+    +  V+ A+ + +EM+ +G  P+  TYN +IRG+C  G ++RA E +
Sbjct: 223 TVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMI 282

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
             ++   CEP+V +YNIL+R   + G+ E G +L  KM S  C PN+ TY+ILI+++   
Sbjct: 283 RNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRD 342

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            K ++   A  LL  M ++G  P  ++++ ++      G   +A E L      G LP
Sbjct: 343 GKIEE---AMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLP 397



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 118/230 (51%), Gaps = 7/230 (3%)

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
           R+G   E+      M ++    DV+  T ++ GF  +  + +A  V + +   G  P V 
Sbjct: 97  RSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVMEILEKFGQ-PDVF 155

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
            YNA+I   CK + +++A  V + M  K + P++ TYN++I  LC  G+++ AL+ + ++
Sbjct: 156 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQL 215

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
             D C+P V TY ILI      G ++  L+L ++M S    P++ TYN +I  M      
Sbjct: 216 LSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMV 275

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           D    A +++  +  +G  P   ++N +L  LL   NQG  +E  +L ++
Sbjct: 276 DR---AFEMIRNLELKGCEPDVISYNILLRALL---NQGKWEEGEKLMTK 319



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 37/191 (19%)

Query: 323 CKKDSVENAILVFEEMVGKGY----------------------------------MPNST 348
           C+  +   ++ + E MV KGY                                   P+  
Sbjct: 96  CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVMEILEKFGQPDVF 155

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            YN +I G C    ++ A   + RM+  +  P+  TYNI+I   C  G+++  L++ +++
Sbjct: 156 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQL 215

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
            S  C P + TY ILI +  +    D+ L   KLL EM+ RG  P  FT+N ++ G+   
Sbjct: 216 LSDNCQPTVITYTILIEATMLEGGVDEAL---KLLDEMLSRGLKPDMFTYNTIIRGMCKE 272

Query: 469 GNQGLAKEILR 479
           G    A E++R
Sbjct: 273 GMVDRAFEMIR 283


>gi|218202055|gb|EEC84482.1| hypothetical protein OsI_31142 [Oryza sativa Indica Group]
          Length = 586

 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 191/404 (47%), Gaps = 7/404 (1%)

Query: 68  TPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVH 127
           TP     +++R  +  L +L FF      P ++H P S     +  A  R +  + +L+ 
Sbjct: 94  TPGDAAAVLRRCRHLPLPSLRFFLFAGELPGFSHHPDSLLVLANSLAGARLFPLLRSLLS 153

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
            +   +L  ++  F ++   Y  A   + A++ F SM   G   ++  F+++L  L +  
Sbjct: 154 DLPPSAL--SRGLFPLLFRAYSRARLPEDAIRAFSSMAGFGFPPTIADFHSLLFALSRNG 211

Query: 188 KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
            VE     F+    +F     +Y ++ +GW +VK+   A  +  EMV+RG+  ++  YN 
Sbjct: 212 LVEYGERFFRESSAQFDVSAKAYTILISGWAVVKKPENARSLFDEMVERGVELDVHVYNA 271

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEI-DVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
           ++    R G I  A      M+K    + +  TY   +H      +++ A  V D M   
Sbjct: 272 LIDALCRGGDITSAQEQLSNMQKSHGLVPNAATYGPFLHAACASKDVRAALRVLDRMHTH 331

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
            + P+V TYNA+I++LC    +  A  + +E+  +G  P+  +YN ++   C   E+ +A
Sbjct: 332 ALTPNVFTYNAVIRLLCDLGEINEAYNILDEITTQGEKPDVWSYNTLLNAHCKLKEVNKA 391

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
           L  + RM  + C P+  +YN+L++     G  +  +E+++ M      P   TY ++I  
Sbjct: 392 LRLISRMDKELCPPDRHSYNMLLKMLIGVGRFDTAIEVWDGMEKRGFHPGAATYAVMIHG 451

Query: 427 MFVRK-KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
           +  +K +++D   A    + MVD G  P + T   + + LL++G
Sbjct: 452 LASKKGRAED---ACSYFVRMVDEGIPPYQATCEVLRDRLLMLG 492


>gi|242074832|ref|XP_002447352.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
 gi|241938535|gb|EES11680.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
          Length = 888

 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 101/365 (27%), Positives = 178/365 (48%), Gaps = 4/365 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           LV  M+   +      +  +   Y  A    + + +F  + E G R S+ S+  +++L  
Sbjct: 380 LVREMEEDGIDAPIDVYHSMMHGYTVAQDEKKCLIVFERLKECGFRPSIISYGCLINLYV 439

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  KV KA  + K       K +  +Y+++ NG+  +     A  + ++M+  GL P+  
Sbjct: 440 KIGKVPKALAVSKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRA 499

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            YN++++ + + G ++ A R F  MKK + +    T+  I+ GF V G++KRA +  D M
Sbjct: 500 IYNLLVEAFCKMGNMDRAIRIFERMKKERMQPSNRTFRPIIEGFAVAGDMKRALDTLDLM 559

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G  P+V TYNA+I  L +K  VE A+ V ++M   G  PN  TY +++RG   +G++
Sbjct: 560 RRSGCAPTVMTYNALIHGLIRKHQVERAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDI 619

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
            +A E+  ++K+   + +V  Y  L+R  C +G ++  L +  +M       N   YNIL
Sbjct: 620 GKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNIL 679

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I     R    D+  A  L+ +M + G  P   TF   +N     G+   A+ +++  + 
Sbjct: 680 IDGWARR---GDVWEAADLMKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMAD 736

Query: 484 CGRLP 488
            G  P
Sbjct: 737 VGLKP 741



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 160/331 (48%), Gaps = 1/331 (0%)

Query: 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           H+  ++   I+    L D+   +++   M    L P +  + ++ E +   G  DRA++I
Sbjct: 461 HNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRI 520

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCL 219
           F  M +   + S  +F  I++       +++A +   + R    A  V++YN + +G   
Sbjct: 521 FERMKKERMQPSNRTFRPIIEGFAVAGDMKRALDTLDLMRRSGCAPTVMTYNALIHGLIR 580

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
             +  +A+ VL +M   G+ PN  TY I+++GY  +G I +A+ +F ++K+   ++DV  
Sbjct: 581 KHQVERAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYI 640

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y T++      G ++ A  V   M    +  +   YN +I    ++  V  A  + ++M 
Sbjct: 641 YETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLMKQMK 700

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             G  PN  T+   I   C  G+M+RA   +  M D   +PNV+T+  LI+ +      +
Sbjct: 701 EDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWAKVSLPD 760

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
           R L+ FE+M S    P+   Y+ L++S+  R
Sbjct: 761 RALKCFEEMKSAGLKPDEAAYHCLVTSLLSR 791



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 165/349 (47%), Gaps = 4/349 (1%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M++  + P    F  +   Y  A     A+     M   G   ++ +++ ++    K   
Sbjct: 279 MRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLEMTVVTYSILIAGYGKTND 338

Query: 189 VEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
            E A  LFK  + K    + I Y+ I +  C     ++A E+++EM + G++  +  Y+ 
Sbjct: 339 AESADKLFKEAKTKLDNLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHS 398

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ GY  A   ++    F  +K+      +++Y  +++ +  +G++ +A  V   M + G
Sbjct: 399 MMHGYTVAQDEKKCLIVFERLKECGFRPSIISYGCLINLYVKIGKVPKALAVSKEMESHG 458

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           +  +  TY+ +I          NA  +FE+M+  G  P+   YN+++   C  G M+RA+
Sbjct: 459 IKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAI 518

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
               RMK +  +P+ +T+  +I  F  AG+++R L+  + M    C P + TYN LI  +
Sbjct: 519 RIFERMKKERMQPSNRTFRPIIEGFAVAGDMKRALDTLDLMRRSGCAPTVMTYNALIHGL 578

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKE 476
            +RK   +  V+  +L +M   G  P + T+  ++ G    G+ G A E
Sbjct: 579 -IRKHQVERAVS--VLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFE 624



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 85/380 (22%), Positives = 168/380 (44%), Gaps = 8/380 (2%)

Query: 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ 171
           L +R  D++ V +   R+      P+++ F ++   Y   G    A   F +M   G   
Sbjct: 231 LESRPEDWQAVVSAFERIPK----PSRREFGLMVVYYAKRGDKHHARATFENMRARGIEP 286

Query: 172 SLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVL 230
           +   F +++      + +  A +  +  + +  +  V++Y+++  G+        A ++ 
Sbjct: 287 NAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLEMTVVTYSILIAGYGKTNDAESADKLF 346

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
           KE   +  N N   Y+ ++  + ++G ++ A     EM++   +  +  Y +++HG+ V 
Sbjct: 347 KEAKTKLDNLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVA 406

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
            + K+   VF+ +   G  PS+ +Y  +I +  K   V  A+ V +EM   G   N+ TY
Sbjct: 407 QDEKKCLIVFERLKECGFRPSIISYGCLINLYVKIGKVPKALAVSKEMESHGIKHNNKTY 466

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           +++I G  H  +   A      M     +P+   YN+L+  FC  G ++R + +FE+M  
Sbjct: 467 SMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMKK 526

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
               P+  T+  +I    V   + D+  A   L  M   G  P   T+N +++GL+    
Sbjct: 527 ERMQPSNRTFRPIIEGFAV---AGDMKRALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQ 583

Query: 471 QGLAKEILRLQSRCGRLPRQ 490
              A  +L   S  G  P +
Sbjct: 584 VERAVSVLDKMSIAGIAPNE 603



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 147/381 (38%), Gaps = 55/381 (14%)

Query: 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE-KKVEKAYN-LFKVFRGKFK 204
           R+V AG A  A   +    E  CR+    F  +L+   ++ + V  A+  + K  R +F 
Sbjct: 202 RWVEAGVAREARSPWHKGREDACRE----FRRVLESRPEDWQAVVSAFERIPKPSRREFG 257

Query: 205 ADVISYNVIANGWCLVKRTNK--ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262
             V+ Y          KR +K  A    + M  RG+ PN   +  ++  Y  A  +  A 
Sbjct: 258 LMVVYY---------AKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGAL 308

Query: 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVV-------------------------------- 290
               EMK    E+ VVTY+ ++ G+G                                  
Sbjct: 309 SCVEEMKSEGLEMTVVTYSILIAGYGKTNDAESADKLFKEAKTKLDNLNGIIYSNIIHAH 368

Query: 291 ---GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
              G + RA  +   M   G+   +  Y++M+         +  ++VFE +   G+ P+ 
Sbjct: 369 CQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVAQDEKKCLIVFERLKECGFRPSI 428

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
            +Y  +I      G++ +AL     M+    + N +TY++LI  F    +      +FE 
Sbjct: 429 ISYGCLINLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFED 488

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467
           M      P+   YN+L+ +     K  ++  A ++   M      P   TF  ++ G  +
Sbjct: 489 MIKSGLQPDRAIYNLLVEAFC---KMGNMDRAIRIFERMKKERMQPSNRTFRPIIEGFAV 545

Query: 468 IGNQGLAKEILRLQSRCGRLP 488
            G+   A + L L  R G  P
Sbjct: 546 AGDMKRALDTLDLMRRSGCAP 566


>gi|225464138|ref|XP_002265372.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100
           [Vitis vinifera]
 gi|296087974|emb|CBI35257.3| unnamed protein product [Vitis vinifera]
          Length = 503

 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 115/414 (27%), Positives = 192/414 (46%), Gaps = 20/414 (4%)

Query: 65  LHWTPQL----VDQIIKRLWNHALKALHFFN--ILSYHPTYAHSPSSFDHAIDLAARLRD 118
           + W+ Q+    V Q+IK   +   KA+  F+     Y   + HS  +F   I        
Sbjct: 7   IKWSKQIGSAQVAQLIKAERD-IQKAIVIFDSATAEYTNGFRHSHQTFSLMISRLVSANH 65

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           +R    L+ RMK      T+  F  I   Y    K   AV++F  M E+ C  S  S+ T
Sbjct: 66  FRLAEELLCRMKEEKCNITEDIFLSICRAYGRVHKPLDAVRVFRKMKEYECEPSQKSYIT 125

Query: 179 ILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRT-NKALEVLKEMVDR 236
           +  +L  E +++ A   ++  R       V S NV+    C    T + AL + +EM +R
Sbjct: 126 VFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNR 185

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           G  P+  TY  ++ G  R G+I EA   F EM+ + C   VVTYT+++HG     ++  A
Sbjct: 186 GCPPDSYTYGTLINGLCRLGKIGEAKELFKEMETKACSPTVVTYTSLIHGLCQSKDLDSA 245

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
             + + M + G+ P+V TY++++   CK      A+ + + MV + ++PN  TY+ ++ G
Sbjct: 246 IRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHG 305

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
           LC  G+++ A+E + RMK     P+   Y  +I  FCD  +        ++M  G   PN
Sbjct: 306 LCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGISPN 365

Query: 417 LDTY-------NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
             T+       NI++  +     +     A +L + M  RG      TF+ ++N
Sbjct: 366 RLTWSLHVRIHNIVVQGLCTEHPNR----AFQLYLSMRTRGISIDAKTFDSLVN 415



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 167/328 (50%), Gaps = 12/328 (3%)

Query: 129 MKSLSLGPTQKTFAIIAERYV-SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           M+ + + P+  +  ++ +    ++G  D A++IF  M   GC     ++ T+++ LC+  
Sbjct: 146 MREMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPDSYTYGTLINGLCRLG 205

Query: 188 KVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
           K+ +A  LFK    K     V++Y  + +G C  K  + A+ +L+EM  +G+ PN+ TY+
Sbjct: 206 KIGEAKELFKEMETKACSPTVVTYTSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYS 265

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
            ++ G+ ++G    A      M  R+   +++TY+T+VHG    G+++ A  + D M   
Sbjct: 266 SLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQ 325

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY-------NVVIRGLCH 359
           G+ P    Y  +I   C       A    +EMV  G  PN  T+       N+V++GLC 
Sbjct: 326 GLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGISPNRLTWSLHVRIHNIVVQGLC- 384

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419
           T    RA +    M+      + +T++ L+ YFC+ G++ +   L ++M    C+P+  T
Sbjct: 385 TEHPNRAFQLYLSMRTRGISIDAKTFDSLVNYFCNKGDLHKAAHLVDEMVLDGCIPDEVT 444

Query: 420 YNILISSMFVRKKSDDL--LVAGKLLIE 445
           +N ++ + + R+K  +   LV  +L++E
Sbjct: 445 WNAVVCAFWDRRKVRESAELVQVELMVE 472



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 144/305 (47%), Gaps = 8/305 (2%)

Query: 179 ILDLLCKEKKVEKAYNLFKV----FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           +  L+  E+ ++KA  +F      +   F+    +++++ +          A E+L  M 
Sbjct: 18  VAQLIKAERDIQKAIVIFDSATAEYTNGFRHSHQTFSLMISRLVSANHFRLAEELLCRMK 77

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
           +   N     +  + + Y R  +  +A R F +MK+ +CE    +Y T+        ++K
Sbjct: 78  EEKCNITEDIFLSICRAYGRVHKPLDAVRVFRKMKEYECEPSQKSYITVFAILVGENQLK 137

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL-VFEEMVGKGYMPNSTTYNVV 353
            A   +  M   G+ PSVA+ N +I+ LCK     +A L +F EM  +G  P+S TY  +
Sbjct: 138 LALRFYRYMREMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPDSYTYGTL 197

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           I GLC  G++  A E    M+   C P V TY  LI   C + +++  + L E+M S   
Sbjct: 198 INGLCRLGKIGEAKELFKEMETKACSPTVVTYTSLIHGLCQSKDLDSAIRLLEEMASKGI 257

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGL 473
            PN+ TY+ L+       KS     A +LL  MV R  +P   T++ +++GL   G    
Sbjct: 258 KPNVFTYSSLMDG---HCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQE 314

Query: 474 AKEIL 478
           A EIL
Sbjct: 315 AVEIL 319



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 117/253 (46%), Gaps = 4/253 (1%)

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           G   +  T+++++     A     A      MK+ KC I    + +I   +G V +   A
Sbjct: 45  GFRHSHQTFSLMISRLVSANHFRLAEELLCRMKEEKCNITEDIFLSICRAYGRVHKPLDA 104

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
             VF  M      PS  +Y  +  +L  ++ ++ A+  +  M   G  P+  + NV+I+ 
Sbjct: 105 VRVFRKMKEYECEPSQKSYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIKA 164

Query: 357 LC-HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
           LC ++G M+ AL     M +  C P+  TY  LI   C  G+I    ELF++M +  C P
Sbjct: 165 LCKNSGTMDAALRIFREMPNRGCPPDSYTYGTLINGLCRLGKIGEAKELFKEMETKACSP 224

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
            + TY  LI  +    +S DL  A +LL EM  +G  P  FT++ +++G    G    A 
Sbjct: 225 TVVTYTSLIHGLC---QSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRAL 281

Query: 476 EILRLQSRCGRLP 488
           E+L +      LP
Sbjct: 282 ELLDMMVSRRHLP 294



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 89/195 (45%), Gaps = 13/195 (6%)

Query: 292 EIKRARNVFDGMV---NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
           +I++A  +FD        G   S  T++ MI  L       N   + EE++ +       
Sbjct: 27  DIQKAIVIFDSATAEYTNGFRHSHQTFSLMISRLVSA----NHFRLAEELLCRMKEEKCN 82

Query: 349 TYNVVIRGLCHT-GEMERALEFVG---RMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
               +   +C   G + + L+ V    +MK+ ECEP+ ++Y  +        +++  L  
Sbjct: 83  ITEDIFLSICRAYGRVHKPLDAVRVFRKMKEYECEPSQKSYITVFAILVGENQLKLALRF 142

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           +  M      P++ + N+LI ++   K S  +  A ++  EM +RG  P  +T+  ++NG
Sbjct: 143 YRYMREMGIPPSVASLNVLIKALC--KNSGTMDAALRIFREMPNRGCPPDSYTYGTLING 200

Query: 465 LLLIGNQGLAKEILR 479
           L  +G  G AKE+ +
Sbjct: 201 LCRLGKIGEAKELFK 215


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 120/456 (26%), Positives = 199/456 (43%), Gaps = 69/456 (15%)

Query: 92  ILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149
           +L     Y   P+  S++  +D+            + + M S  + PT  TF ++ +   
Sbjct: 160 LLDMKGVYCCEPTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALC 219

Query: 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVI 208
              + D A  +   M +HGC  +   + T++  L K  +V +A  L  ++F      DV 
Sbjct: 220 MVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVD 279

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY----------------------- 245
           ++N +  G C + R ++  +++  M+ RG  PN  TY                       
Sbjct: 280 TFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKV 339

Query: 246 --------NIVLKGYFRAGQIEEAWRFFLE-MKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
                    I++ GY ++G+++EA  F  + M K  C  DV T+ T++HG    G +  A
Sbjct: 340 PTPNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSA 399

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
            ++ + M   G  P++ TY  ++   CKK+ +E A  V  EM  KG+  N   YNV++R 
Sbjct: 400 VDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRA 459

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
           LC  G++ +AL+ +G M D  C+P++ T+N LI   C     E  L L+  M     + N
Sbjct: 460 LCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIAN 519

Query: 417 LDTYNILISSMFVR--------KKSDDLLVAG-------------------------KLL 443
             TYN LI + F+R        K  +D+L  G                          L 
Sbjct: 520 TVTYNTLIHA-FLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLF 578

Query: 444 IEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
            EMV +  +P   + N ++NGL  +G    A E+LR
Sbjct: 579 DEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLR 614



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 102/324 (31%), Positives = 164/324 (50%), Gaps = 4/324 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA-YN 194
           P   TF  +       G    AV +   M  +GC  +L ++ T+LD  CK+ ++E+A Y 
Sbjct: 378 PDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYV 437

Query: 195 LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           L ++    F+ +++ YNV+    C   +  KAL++L EM D+G  P++ T+N ++ G  +
Sbjct: 438 LNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCK 497

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
             + E+A   + +M       + VTY T++H F   G I+ A  + + M+  G      T
Sbjct: 498 VDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEIT 557

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN +I+  CK  + E A+ +F+EMV K  +P++ + N++I GLC  G++  ALE +  M 
Sbjct: 558 YNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMI 617

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
                P+V TYN LI   C  G I     LF K+ +    P+  TYN LI         D
Sbjct: 618 HRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFD 677

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTF 458
           D   A  LL+  V+  F+P   T+
Sbjct: 678 D---AYLLLLRGVENAFIPNDVTW 698



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 156/308 (50%), Gaps = 2/308 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           +V+ M +    P   T+  + + +    + + A  +   M   G   ++  +N +L  LC
Sbjct: 402 MVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALC 461

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  KV KA ++      K  K D+ ++N +  G C V R   AL + ++M+  G+  N  
Sbjct: 462 KNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTV 521

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN ++  + R G I+EA +   +M  R C +D +TY  ++  F  +G  ++A  +FD M
Sbjct: 522 TYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEM 581

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           V   ++PS  + N +I  LC+   V NA+ +  +M+ +G  P+  TYN +I GLC  G +
Sbjct: 582 VRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNI 641

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             A     +++ +  +P+  TYN LI + C AG  +    L  +      +PN  T+ IL
Sbjct: 642 REAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFDDAYLLLLRGVENAFIPNDVTWYIL 701

Query: 424 ISSMFVRK 431
           +S+ F+++
Sbjct: 702 VSN-FIKE 708



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 109/393 (27%), Positives = 190/393 (48%), Gaps = 15/393 (3%)

Query: 81  NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKT 140
           N ALK L    ++   P       +F+  I    RL        LV RM      P   T
Sbjct: 260 NEALKLLEEMFLMGCLP----DVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDIT 315

Query: 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF---K 197
           + ++       GK D A ++ L+        +   F  +++   K  ++++A N F   K
Sbjct: 316 YGVLMNGLCRVGKVDEA-QVLLNKVP---TPNDVHFTILINGYVKSGRLDEA-NAFLYDK 370

Query: 198 VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
           + +   + DV ++N + +G C       A++++ +M   G  PNL TY  +L G+ +  Q
Sbjct: 371 MIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQ 430

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           +EEA     EM  +  E++++ Y  ++      G++ +A ++   M + G  P + T+N 
Sbjct: 431 LEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNT 490

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           +I  LCK D  E+A+ ++ +M+  G + N+ TYN +I      G ++ AL+ V  M    
Sbjct: 491 LIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRG 550

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
           C  +  TYN LI+ FC  G  E+ L LF++M     +P+  + N+LI+ +    K  + L
Sbjct: 551 CPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNAL 610

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
              +LL +M+ RG  P   T+N ++NGL  +GN
Sbjct: 611 ---ELLRDMIHRGLAPDVVTYNSLINGLCKMGN 640



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 99/439 (22%), Positives = 174/439 (39%), Gaps = 70/439 (15%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           ++  F        Y H+   +   ID     ++++ +  L+ ++K   +   +  F  I 
Sbjct: 85  SMAIFQWAGSQKGYCHTFDVYHVLIDKLGAAKEFKVIDKLLLQIKEEGIAFRESLFICIM 144

Query: 146 ERYVSAGKADRAVKIFLSMHE-HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFK 204
           + Y  A    +A ++ L M   + C  +  S+N +LD+L        A N+F        
Sbjct: 145 KYYGRANLPGQATRMLLDMKGVYCCEPTFKSYNVVLDILVSANCPSVAANVFY------- 197

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
                                      EM+ +G+ P + T+ +V+K      +++ A   
Sbjct: 198 ---------------------------EMLSKGVIPTVYTFGVVMKALCMVNEVDNACSL 230

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
             +M K  C  + V Y T++H       +  A  + + M   G LP V T+N +I  LC+
Sbjct: 231 LRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCR 290

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV-------------- 370
            + +     + + M+ +G+ PN  TY V++ GLC  G+++ A   +              
Sbjct: 291 LNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVPTPNDVHFTIL 350

Query: 371 -------GRMKD-----------DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
                  GR+ +           + C P+V T+N LI   C  G +   +++   M +  
Sbjct: 351 INGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANG 410

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
           C PNL TY  L+       K + L  AG +L EM  +GF      +N +L  L   G   
Sbjct: 411 CTPNLITYTTLLDGFC---KKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVP 467

Query: 473 LAKEILRLQSRCGRLPRQF 491
            A ++L   S  G  P  F
Sbjct: 468 KALDMLGEMSDKGCKPDIF 486


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 172/364 (47%), Gaps = 5/364 (1%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           S  S+   I+     +D      L+ +M    L P    ++ +   Y S G+ + A ++ 
Sbjct: 348 SAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLL 407

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLV 220
             M   G    +  +N I+  L K  K+E+A       +G+  K D +++     G+   
Sbjct: 408 DGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKT 467

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
            +  +A +   EM+D GL PN   Y +++ G+F+AG + EA   F  +       DV T 
Sbjct: 468 GKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTC 527

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
           +  +HG    G ++ A  VF  +   G++P V TY+++I   CK+  VE A  + +EM  
Sbjct: 528 SAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCL 587

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           KG  PN   YN ++ GLC +G+++RA +    M +   EP+  TY+ +I  +C +  +  
Sbjct: 588 KGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAE 647

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
              LF +M S    P+   YN L+       K  D+  A  L  EM+ +GF     +FN 
Sbjct: 648 AFSLFHEMPSKGVQPHSFVYNALVHGCC---KEGDMEKAMNLFREMLQKGF-ATTLSFNT 703

Query: 461 VLNG 464
           +++G
Sbjct: 704 LIDG 707



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 170/330 (51%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           ++  +D   +  D +    L   M    L P   T++ + + Y  +     A  +F  M 
Sbjct: 597 YNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMP 656

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNK 225
             G +     +N ++   CKE  +EKA NLF+    K  A  +S+N + +G+C   +  +
Sbjct: 657 SKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQE 716

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
           A ++ +EM+ + + P+  TY  V+  + +AG++EEA   F EM++R   +D VTYT++++
Sbjct: 717 ASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMY 776

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
           G+  +G+      +F+ MV  GV P   TY  +I   CK+D++  A  + +E+VGKG + 
Sbjct: 777 GYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLT 836

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
             T ++++I  LC   ++  A + +  M +   +P++   + L+R F +AG+++    +F
Sbjct: 837 KGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVF 896

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
           E + S   +P+  T   L++       S+D
Sbjct: 897 EGVKSLGLVPDTTTLIDLVNGNLNDTDSED 926



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 111/453 (24%), Positives = 196/453 (43%), Gaps = 53/453 (11%)

Query: 56  LTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNIL--SYHPTYAHSPSSFDHAIDLA 113
           LTQ +  P  + +  ++D ++    N+   +   F+IL  SY           D A ++ 
Sbjct: 127 LTQMIRTP--YSSSSILDSVLFWFRNYGGSSPVVFDILIDSYKRM-----GMLDEAANVF 179

Query: 114 ARLRDYRTVWTLVH-----RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG 168
              ++   + +L+       M    L P   T+ II      A + + A   F  M + G
Sbjct: 180 FVAKNDSILISLIRCNSLRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTG 239

Query: 169 CRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKAL 227
            +   N+ + ++D   +E  +++   +  V        ++I+YNV+ +G C   +  KA 
Sbjct: 240 LKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAA 299

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK--------------- 272
           E+LK M+  G  PN  T+ ++++GY R   +  A     EM+KR                
Sbjct: 300 EILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGL 359

Query: 273 CEI--------------------DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
           C                      +VV Y+T++ G+   G I+ AR + DGM   GV P +
Sbjct: 360 CHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDI 419

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
             YNA+I  L K   +E A     E+ G+G  P++ T+   I G   TG+M  A ++   
Sbjct: 420 FCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDE 479

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           M D    PN   Y +LI     AG +   L +F  + +   LP++ T +  I  +    +
Sbjct: 480 MLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGR 539

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
             + L   K+  E+ ++G +P  FT++ +++G 
Sbjct: 540 VQEAL---KVFSELKEKGLVPDVFTYSSLISGF 569



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 164/363 (45%), Gaps = 34/363 (9%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           ++   + +L + P  +T +      +  G+   A+K+F  + E G    + ++++++   
Sbjct: 510 SIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGF 569

Query: 184 CKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CK+ +VEKA+ L      K  A ++  YN + +G C      +A ++   M ++GL P+ 
Sbjct: 570 CKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDS 629

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TY+ ++ GY ++  + EA+  F EM  +  +     Y  +VHG    G++++A N+F  
Sbjct: 630 VTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFRE 689

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M+  G   +  ++N +I   CK   ++ A  +F+EM+ K  MP+  TY  VI   C  G+
Sbjct: 690 MLQKG-FATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGK 748

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           ME A      M++     +  TY  L+  +   G+      LFEKM +    P+  TY +
Sbjct: 749 MEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGL 808

Query: 423 LI---------------------SSMFVRK-----------KSDDLLVAGKLLIEMVDRG 450
           +I                       M  +            K +DL  A KLL EM + G
Sbjct: 809 VIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELG 868

Query: 451 FMP 453
             P
Sbjct: 869 LKP 871



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 133/315 (42%), Gaps = 39/315 (12%)

Query: 97  PTYAHSPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKA 154
           P     P S  ++  ID   +  +    ++L H M S  + P    +  +       G  
Sbjct: 621 PEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDM 680

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVI 213
           ++A+ +F  M + G   +L SFNT++D  CK  K+++A  LF+    K    D ++Y  +
Sbjct: 681 EKAMNLFREMLQKGFATTL-SFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTV 739

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
            +  C   +  +A  + KEM +R L  +  TY  ++ GY + GQ  E +  F +M  +  
Sbjct: 740 IDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGV 799

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
           + D VTY  +++       +  A  + D +V  G+L     ++ +I  LCK++ +  A  
Sbjct: 800 KPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASK 859

Query: 334 VFEEM---------------------VGK--------------GYMPNSTTYNVVIRGLC 358
           + +EM                      GK              G +P++TT   ++ G  
Sbjct: 860 LLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNL 919

Query: 359 HTGEMERALEFVGRM 373
           +  + E A   + ++
Sbjct: 920 NDTDSEDARNLIKQL 934


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 184/374 (49%), Gaps = 5/374 (1%)

Query: 117 RDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSF 176
           R    +  L+   K     P   ++ ++       G+  +A  +F  M + G   ++ ++
Sbjct: 251 RSQEALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTY 310

Query: 177 NTILDLLCKEKKVEKA-YNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235
           N+I+  LCK + ++KA   L ++F    + D ++Y  + +G+  + R  +A ++ KEM  
Sbjct: 311 NSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTR 370

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
            GL P++ T+N ++    +  + +EA   F  +  +  + D+++Y+ ++HG+   G    
Sbjct: 371 EGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVD 430

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
             N+F  M + G++     +N +I    K+  ++ A+L+F EM G+G  PN  TY  VI 
Sbjct: 431 MNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIA 490

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF-EKMGSGVCL 414
            LC  G +  A+E + +M     +PN   Y+ LI+ FC  G++ +  EL  E M  G+  
Sbjct: 491 ALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPR 550

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           PN+  ++ +I S+    +  +      L+I + DR   P  FTFN +++G  L+G    A
Sbjct: 551 PNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDR---PDIFTFNSLIDGYCLVGKMDKA 607

Query: 475 KEILRLQSRCGRLP 488
             +L      G  P
Sbjct: 608 FGVLDAMVSAGTEP 621



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 171/369 (46%), Gaps = 40/369 (10%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTL--VHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           SP+   +A  +AA  R  R    +  + +M S+ L P    +  + + + + G   +A +
Sbjct: 479 SPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKE 538

Query: 160 IFLSMHEHGC-RQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGW 217
           +   M + G  R ++  F++I+  LC E +V  A ++F  V     + D+ ++N + +G+
Sbjct: 539 LVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGY 598

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           CLV + +KA  VL  MV  G  P++ TY+ ++ GYF++G+I++    F EM  ++ +   
Sbjct: 599 CLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTT 658

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           VTY+ ++ G    G    A+ +F  M+  G   S++TY  ++Q LC+ +  + AI +F +
Sbjct: 659 VTYSLVLDGLFRAGRTSAAKKMFHEMIESGTAMSISTYTIILQGLCRNNCTDEAITLFHK 718

Query: 338 M-----------------------------------VGKGYMPNSTTYNVVIRGLCHTGE 362
           +                                      G +PN++TY V+I  L   G 
Sbjct: 719 LGAMNLKFEIAILNTMIHALYKVKRREEAHDLFASVSASGLVPNASTYGVMIINLLKEGS 778

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           +E A      M+   C P+ +  N +IR     GEI +      K+   +      T ++
Sbjct: 779 VEEADIMFSSMEKTGCAPSSRLLNDIIRMLLQKGEIVKAGYYMSKVDGTIISLEASTTSL 838

Query: 423 LISSMFVRK 431
           LI S+F  K
Sbjct: 839 LI-SLFASK 846



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 113/468 (24%), Positives = 197/468 (42%), Gaps = 60/468 (12%)

Query: 66  HWTPQLVDQIIK---RLWNHALK-ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRT 121
           +W PQ+     K   R    + + A H F+ L    T  H   + +  +   AR RD   
Sbjct: 78  YWDPQVAFVAAKARVRAGTFSTEDAHHLFDELLRQDTPVHG-RALNGFLAALARARDSVA 136

Query: 122 -------VWTLVHRMKSLSLGP-----TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
                     L +R+     GP     T  T+ I+ +    A + D     F  +   G 
Sbjct: 137 CSDAPALAVALFNRICREEAGPRVVPLTVHTYGILMDCCCRARRPDLGPAFFARLLRAGL 196

Query: 170 RQSLNSFNTILDLLCKEKKVEKA-------------------YN---------------- 194
           R      NT L  LC  K+ ++A                   YN                
Sbjct: 197 RTDGIVTNTFLKCLCYAKRTDEALSMLLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEAL 256

Query: 195 --LFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
             L ++ +G     DV+SY ++ +G  +    +KA  +  EMV +G+ PN+ TYN ++  
Sbjct: 257 DMLLRMTKGDGCSPDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHA 316

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
             +A  +++A     +M     + D VTYT ++HG+  +G  K A  +F  M   G++P 
Sbjct: 317 LCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPD 376

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
           + T+N+++  LCK    + A  +F  +  KG+ P+  +Y++++ G    G          
Sbjct: 377 IVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFH 436

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISSMFVR 430
            M D+    +   +NILI      G ++  L +F +M G GV  PN+ TY  +I+++   
Sbjct: 437 SMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVS-PNVVTYATVIAALCRM 495

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
            +  D   A + L +M+  G  P    ++ ++ G    G+   AKE++
Sbjct: 496 GRLAD---AMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELV 540



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/421 (20%), Positives = 182/421 (43%), Gaps = 40/421 (9%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  +D   + +  +    + H + +    P   +++I+   Y + G+      +F SM
Sbjct: 379 TFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSM 438

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
            ++G     + FN +++   K   +++A  +F   RG+    +V++Y  +    C + R 
Sbjct: 439 TDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRL 498

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC---------- 273
             A+E L +M+  GL PN   Y+ +++G+   G + +A     EM  +            
Sbjct: 499 ADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSS 558

Query: 274 --------------------------EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
                                       D+ T+ +++ G+ +VG++ +A  V D MV+ G
Sbjct: 559 IIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAG 618

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
             P V TY+ +I    K   +++ +++F EM+ K   P + TY++V+ GL   G    A 
Sbjct: 619 TEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAK 678

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           +    M +     ++ TY I+++  C     +  + LF K+G+      +   N +I ++
Sbjct: 679 KMFHEMIESGTAMSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKFEIAILNTMIHAL 738

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
           +  K+ ++   A  L   +   G +P   T+  ++  LL  G+   A  +     + G  
Sbjct: 739 YKVKRREE---AHDLFASVSASGLVPNASTYGVMIINLLKEGSVEEADIMFSSMEKTGCA 795

Query: 488 P 488
           P
Sbjct: 796 P 796



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 143/294 (48%), Gaps = 4/294 (1%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           SS  H++    R+ + + V+ LV  +      P   TF  + + Y   GK D+A  +  +
Sbjct: 557 SSIIHSLCNEGRVMNAQDVFNLVIHIGDR---PDIFTFNSLIDGYCLVGKMDKAFGVLDA 613

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKR 222
           M   G    + +++T+++   K  +++    LF+ +   + K   ++Y+++ +G     R
Sbjct: 614 MVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGR 673

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
           T+ A ++  EM++ G   +++TY I+L+G  R    +EA   F ++     + ++    T
Sbjct: 674 TSAAKKMFHEMIESGTAMSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKFEIAILNT 733

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++H    V   + A ++F  +   G++P+ +TY  MI  L K+ SVE A ++F  M   G
Sbjct: 734 MIHALYKVKRREEAHDLFASVSASGLVPNASTYGVMIINLLKEGSVEEADIMFSSMEKTG 793

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
             P+S   N +IR L   GE+ +A  ++ ++          T ++LI  F   G
Sbjct: 794 CAPSSRLLNDIIRMLLQKGEIVKAGYYMSKVDGTIISLEASTTSLLISLFASKG 847



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/411 (22%), Positives = 168/411 (40%), Gaps = 42/411 (10%)

Query: 98  TYAHSPSSFDHAIDLAARLRDYRTV--WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKAD 155
           T  H P    ++I L     + R V    L H M    +      F I+   +   G  D
Sbjct: 405 TKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMD 464

Query: 156 RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIA 214
            A+ IF  M   G   ++ ++ T++  LC+  ++  A   L ++     K + + Y+ + 
Sbjct: 465 EALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLI 524

Query: 215 NGWCLVKRTNKALEVLKEMVDRGL-NPNLT------------------------------ 243
            G+C      KA E++ EM+D+G+  PN+T                              
Sbjct: 525 QGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGD 584

Query: 244 -----TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
                T+N ++ GY   G++++A+     M     E DVVTY+T+++G+   G I     
Sbjct: 585 RPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLI 644

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
           +F  M+   V P+  TY+ ++  L +      A  +F EM+  G   + +TY ++++GLC
Sbjct: 645 LFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTAMSISTYTIILQGLC 704

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLD 418
                + A+    ++     +  +   N +I         E   +LF  + +   +PN  
Sbjct: 705 RNNCTDEAITLFHKLGAMNLKFEIAILNTMIHALYKVKRREEAHDLFASVSASGLVPNAS 764

Query: 419 TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
           TY ++I ++    K   +  A  +   M   G  P     N ++  LL  G
Sbjct: 765 TYGVMIINLL---KEGSVEEADIMFSSMEKTGCAPSSRLLNDIIRMLLQKG 812



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 103/214 (48%), Gaps = 12/214 (5%)

Query: 284 VHGFGVVGEIK-RARN------VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI-LVF 335
           VH +G++ +   RAR        F  ++  G+       N  ++ LC     + A+ ++ 
Sbjct: 165 VHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTDGIVTNTFLKCLCYAKRTDEALSMLL 224

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM-KDDECEPNVQTYNILIRYFCD 394
             M   G +P++ +YN VI+ LC     + AL+ + RM K D C P+V +Y ++I     
Sbjct: 225 HRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGLFM 284

Query: 395 AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
            GEI +   LF +M     +PN+ TYN ++ ++   +  D    A  +L +M D    P 
Sbjct: 285 EGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDK---AELVLRQMFDNSIQPD 341

Query: 455 KFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           + T+  +++G   +G    A ++ +  +R G +P
Sbjct: 342 EVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIP 375


>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 687

 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 105/335 (31%), Positives = 176/335 (52%), Gaps = 4/335 (1%)

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL-FKVFRGKFKADVISYNVI 213
           D A +++  M E G   ++ ++NT+LD  CK+  V++A  L F++       + ++YNV+
Sbjct: 184 DVAREVYNVMVECGICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVL 243

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
            NG        +A E++++M+  GL  ++ TY+ +++GY   GQIEEA R   EM  R  
Sbjct: 244 VNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGA 303

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
              VVTY TI++G    G +  AR + D MVN  ++P + +YN +I    +  ++  A L
Sbjct: 304 VPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFL 363

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           +F E+  +   P+  TYN +I GLC  G+++ A+     M     +P+V T+   +R FC
Sbjct: 364 LFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFC 423

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
             G +    ELF++M +    P+   Y   I+ +    K  D   A  +  EM+ RGF P
Sbjct: 424 KMGNLPMAKELFDEMLNRGLQPDRFAY---ITRIVGELKLGDPSKAFGMQEEMLARGFPP 480

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
              T+N  ++GL  +GN   A E+++     G +P
Sbjct: 481 DLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVP 515



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 119/409 (29%), Positives = 191/409 (46%), Gaps = 15/409 (3%)

Query: 62  CPSLHWTPQLVDQIIKR-LWNHALKALHFFNILSYHP---TYAHSPSSFDHAIDLAARLR 117
           CP++     ++D   K+ +   AL+ L     +   P   TY    +   H+ ++     
Sbjct: 199 CPTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEM----- 253

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177
                  L+  M  L L  +  T+  +   Y   G+ + A ++   M   G   ++ ++N
Sbjct: 254 --EQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYN 311

Query: 178 TILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
           TI+  LCK  +V  A  L  V   K    D++SYN +  G+  +    +A  +  E+  R
Sbjct: 312 TIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYR 371

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
            L P++ TYN ++ G  R G ++ A R   EM K   + DV T+TT V GF  +G +  A
Sbjct: 372 SLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMA 431

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
           + +FD M+N G+ P    Y   I    K      A  + EEM+ +G+ P+  TYNV I G
Sbjct: 432 KELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDG 491

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
           L   G ++ A E V +M  +   P+  TY  +I     AG + +   LF +M S    P+
Sbjct: 492 LHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPS 551

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           + TY +LI S  VR +   L +A     EM ++G  P   T+N ++NGL
Sbjct: 552 VVTYTVLIHSYAVRGR---LKLAILHFFEMHEKGVHPNVITYNALINGL 597



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/324 (29%), Positives = 157/324 (48%), Gaps = 1/324 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S++  I    RL +    + L   ++  SL P+  T+  + +     G  D A+++   M
Sbjct: 344 SYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEM 403

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
            +HG    + +F T +   CK   +  A  LF ++     + D  +Y     G   +   
Sbjct: 404 IKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDP 463

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           +KA  + +EM+ RG  P+L TYN+ + G  + G ++EA     +M       D VTYT+I
Sbjct: 464 SKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSI 523

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +H   + G +++AR +F  M++ G+ PSV TY  +I     +  ++ AIL F EM  KG 
Sbjct: 524 IHAHLMAGHLRKARALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGV 583

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN  TYN +I GLC   +M++A  F   M+     PN  TY ILI   C+ G  +  L 
Sbjct: 584 HPNVITYNALINGLCKVRKMDQAYNFFAEMQAKGISPNKYTYTILINENCNLGHWQEALR 643

Query: 404 LFEKMGSGVCLPNLDTYNILISSM 427
           L++ M      P+  T+  L+  +
Sbjct: 644 LYKDMLDREIQPDSCTHRSLLKHL 667



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 100/191 (52%), Gaps = 4/191 (2%)

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDS-VENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
           VF  MV+ G+LP V   N ++++L  +D+ ++ A  V+  MV  G  P   TYN ++   
Sbjct: 153 VFYKMVSKGLLPDVKNCNRVLRLLRDRDNNIDVAREVYNVMVECGICPTVVTYNTMLDSF 212

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
           C  G ++ AL+ + +M+   C PN  TYN+L+     +GE+E+  EL + M       ++
Sbjct: 213 CKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKELIQDMLRLGLEVSV 272

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
            TY+ LI     + + ++   A +L  EM+ RG +P   T+N ++ GL   G    A+++
Sbjct: 273 YTYDPLIRGYCEKGQIEE---ASRLGEEMLSRGAVPTVVTYNTIMYGLCKWGRVSDARKL 329

Query: 478 LRLQSRCGRLP 488
           L +      +P
Sbjct: 330 LDVMVNKNLMP 340



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 104/238 (43%), Gaps = 35/238 (14%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   +L + +    LV +M    L P   T+  I   ++ AG   +A  +FL M
Sbjct: 484 TYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEM 543

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTN 224
              G   S                                  V++Y V+ + + +  R  
Sbjct: 544 LSKGIFPS----------------------------------VVTYTVLIHSYAVRGRLK 569

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
            A+    EM ++G++PN+ TYN ++ G  +  ++++A+ FF EM+ +    +  TYT ++
Sbjct: 570 LAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFAEMQAKGISPNKYTYTILI 629

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           +    +G  + A  ++  M++  + P   T+ ++++ L  KD   + +   E ++  G
Sbjct: 630 NENCNLGHWQEALRLYKDMLDREIQPDSCTHRSLLKHL-NKDYKLHVVRHLENVIAAG 686


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 99/274 (36%), Positives = 141/274 (51%), Gaps = 5/274 (1%)

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           D++SYN I NG C  KR  KA+++L EM      PN  TY I++ G  + G++EEA R  
Sbjct: 9   DIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRLL 68

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
            EMK++  E+DVV Y+T++ GF   G + R + +FD M+  G+ P+V  Y+ +I   CKK
Sbjct: 69  GEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCKK 128

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
                A  V   M  +G  P+  TY  +I GLC  G   +AL+    M +   EP+  TY
Sbjct: 129 GLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTY 188

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           N+LI   C  G I    ++FE M        + +YN LI  +    K D+   A KL   
Sbjct: 189 NVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDE---AMKLFSS 245

Query: 446 MVDRG--FMPRKFTFNRVLNGLLLIGNQGLAKEI 477
           +++ G    P   TFN V+ GL   G    A EI
Sbjct: 246 LLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEI 279



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 186/366 (50%), Gaps = 6/366 (1%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           MK +++ P   ++  I        + ++AV + + M    C  +  ++  ++D LCKE +
Sbjct: 1   MKRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGR 60

Query: 189 VEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           VE+A  L  ++ R   + DV+ Y+ + +G+C     ++   +  EM+++G++PN+  Y+ 
Sbjct: 61  VEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSC 120

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ G+ + G   EA      M +R  + DV TYT ++ G    G  ++A ++FD M   G
Sbjct: 121 LINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKG 180

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
             PS  TYN +I  LCK+  + +A  +FE M+ KG      +YN +I GLC+ G+++ A+
Sbjct: 181 EEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAM 240

Query: 368 EFVGRMKDDE--CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           +    + +D    EP+V T+N +I+  C  G +++ +E+++ M       NL T +ILI 
Sbjct: 241 KLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIG 300

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
                 KS  +  A +L   +   G +P   T++ +++G   +     AK +       G
Sbjct: 301 EYI---KSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISG 357

Query: 486 RLPRQF 491
             P  F
Sbjct: 358 LSPTLF 363



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/395 (26%), Positives = 192/395 (48%), Gaps = 10/395 (2%)

Query: 103 PSSFDHAIDLAARLRDYRT--VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P+SF + I +    ++ R      L+  MK   L      ++ +   + S G  DR   +
Sbjct: 43  PNSFTYCILMDGLCKEGRVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKAL 102

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWC 218
           F  M E G   ++  ++ +++  CK+    +A  +      RG  + DV +Y  +  G C
Sbjct: 103 FDEMLEKGISPNVVVYSCLINGFCKKGLWREATAVLHTMTERG-IQPDVYTYTCMIGGLC 161

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
              R  KAL++   M ++G  P+  TYN+++ G  + G I +A++ F  M ++   ++VV
Sbjct: 162 KDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVV 221

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGG--VLPSVATYNAMIQVLCKKDSVENAILVFE 336
           +Y T++ G    G++  A  +F  ++  G  V P V T+N +IQ LCK+  ++ A+ +++
Sbjct: 222 SYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYD 281

Query: 337 EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
            M+ +G   N  T +++I     +G +++A+E   R+      P+  TY+++I  FC   
Sbjct: 282 TMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMH 341

Query: 397 EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
            +     LF +M      P L  YN L++S+    K   L  A +L  EM +    P   
Sbjct: 342 MLNFAKGLFSRMKISGLSPTLFDYNTLMASLC---KESSLEQARRLFQEMKESNCEPDTI 398

Query: 457 TFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           +FN +++G L  G+   AKE+L    + G  P  +
Sbjct: 399 SFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAY 433



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 169/354 (47%), Gaps = 6/354 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L   M    + P    ++ +   +   G    A  +  +M E G +  + ++  ++  LC
Sbjct: 102 LFDEMLEKGISPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLC 161

Query: 185 KEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K+ +  KA +LF +   K +    ++YNV+ NG C       A ++ + M+++G    + 
Sbjct: 162 KDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVV 221

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEM--KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           +YN ++ G    G+++EA + F  +       E DV+T+ T++ G    G + +A  ++D
Sbjct: 222 SYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYD 281

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M+  G   ++ T + +I    K   ++ A+ +++ +   G +P+STTY+V+I G C   
Sbjct: 282 TMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMH 341

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
            +  A     RMK     P +  YN L+   C    +E+   LF++M    C P+  ++N
Sbjct: 342 MLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFN 401

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
           I+I       K+ D+  A +LL +M   G  P  +T++  +N L  +G    AK
Sbjct: 402 IMIDGTL---KAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAK 452



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 179/391 (45%), Gaps = 14/391 (3%)

Query: 77  KRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRD--YRTVWTLVHRMKSLSL 134
           K LW  A   LH              P  + +   +    +D   R    L   M     
Sbjct: 128 KGLWREATAVLHTMT------ERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGE 181

Query: 135 GPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN 194
            P+  T+ ++       G    A KIF +M E G R  + S+NT++  LC   K+++A  
Sbjct: 182 EPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMK 241

Query: 195 LFKVF--RGKF-KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
           LF      G + + DVI++N +  G C   R +KA+E+   M++RG   NL T +I++  
Sbjct: 242 LFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGE 301

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
           Y ++G I++A   +  + K        TY+ ++ GF  +  +  A+ +F  M   G+ P+
Sbjct: 302 YIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPT 361

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
           +  YN ++  LCK+ S+E A  +F+EM      P++ ++N++I G    G++  A E + 
Sbjct: 362 LFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLN 421

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
            M+     P+  TY+  I      G++E     F+ M +    P+   Y+ LI    +  
Sbjct: 422 DMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLND 481

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           + ++++    LL +M D G +      N +L
Sbjct: 482 EIEEVI---NLLRQMADMGVILDLEITNSIL 509



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 168/372 (45%), Gaps = 51/372 (13%)

Query: 83  ALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRD------YRTVWTLVHRMKSLSLGP 136
           A KAL  F++++        PS+  + + +    ++      ++   T++ + K L +  
Sbjct: 166 ARKALDLFDLMTEK---GEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEV-- 220

Query: 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHG--CRQSLNSFNTILDLLCKEKKVEKAYN 194
              ++  +     + GK D A+K+F S+ E G      + +FNT++  LCKE +++KA  
Sbjct: 221 --VSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVE 278

Query: 195 LFKVF--RGKF--------------KADVI--------------------SYNVIANGWC 218
           ++     RG F              K+ +I                    +Y+V+ +G+C
Sbjct: 279 IYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFC 338

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
            +   N A  +   M   GL+P L  YN ++    +   +E+A R F EMK+  CE D +
Sbjct: 339 KMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTI 398

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           ++  ++ G    G+I  A+ + + M   G+ P   TY++ I  L K   +E A   F+ M
Sbjct: 399 SFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSM 458

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
           +  G  P++  Y+ +I+G     E+E  +  + +M D     +++  N ++ + C++ E 
Sbjct: 459 IASGITPDNHVYDSLIKGFGLNDEIEEVINLLRQMADMGVILDLEITNSILTFLCNSAEH 518

Query: 399 ERGLELFEKMGS 410
              +EL     S
Sbjct: 519 LHVMELLPNFSS 530


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 109/389 (28%), Positives = 195/389 (50%), Gaps = 19/389 (4%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           S ++  H   L+ +   +     L + M  + + P   T +++ +     GK   A K+ 
Sbjct: 339 SYTTLIHGFCLSGK---WEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLL 395

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLV 220
             + + GC   + +  T++  LC + ++ KA  LF K+ +     +V++   +  G C  
Sbjct: 396 EVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQS 455

Query: 221 KRTNKALEVLKEMVDR----GLN--PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
                ALE+ K M+      G+N  PN  +Y+I++ G  + G+ +EA   F EMK     
Sbjct: 456 GNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVI 515

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
            DV++YT+++HGF   G+ K A+ +F+ MV+ GV P V T++ +I +LCK+  V  A  +
Sbjct: 516 PDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANEL 575

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
            E M+ +G +PN+ TY  +++GLC    +  A +   +M+   C P+V TY  L++  C 
Sbjct: 576 LEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQ 635

Query: 395 AGEIERGLELFEKMGSGVCL------PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
            G I+  LEL +KM S          P++ +Y+I+I  +    + D+   A +L  EM  
Sbjct: 636 TGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDE---ARELFKEMKA 692

Query: 449 RGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
            G +P   ++  +++G    G    AK +
Sbjct: 693 LGVIPNVISYTSLIHGFCRSGKLEDAKHL 721



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 198/419 (47%), Gaps = 51/419 (12%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S+   ID   + R       L   MK+  + P   ++  +   +  +GK ++A  +F  M
Sbjct: 123 SYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEM 182

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKF------------------- 203
            + G R  + + + ++D+LCKE KV +A  L +V   RG                     
Sbjct: 183 LDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRI 242

Query: 204 ---------------KADVISYNVIANGWCLVKRTNKALEVLKEMV-DRG-----LNPNL 242
                          + D I+Y  +  G C     N AL++ +EM+ D G       P L
Sbjct: 243 SEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTL 302

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            +Y+I++ G  +  + +EA   F EMK +    DV++YTT++HGF + G+ ++A+ +F+ 
Sbjct: 303 ISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNE 362

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M++ G+ P V T + +I +LCKK  V  A  + E ++ +G +P+  T   +++GLC    
Sbjct: 363 MLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHR 422

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV------CLPN 416
           + +A +   +M+   C PNV T   L++  C +G I+  LEL + M S        C PN
Sbjct: 423 ISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPN 482

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
             +Y+I+I  +    + D+   A +L  EM   G +P   ++  +++G    G    AK
Sbjct: 483 AISYSIIIDGLCKCGREDE---ARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAK 538



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 181/360 (50%), Gaps = 16/360 (4%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M  + + P   T  ++ + +   GK   A ++   M + GC   + +++T++  LC + +
Sbjct: 1   MLHVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHR 60

Query: 189 VEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG------LNPN 241
           + +A  LF   +    + D I+Y  +  G C   + N AL + +EM++          P 
Sbjct: 61  ISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPT 120

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           L +Y+I++ G  +  + +EA   F EMK +    DV++YT+++HGF   G+ ++A+ +F+
Sbjct: 121 LVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFN 180

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M++ G+   V T + +I +LCK+  V  A  + E M+ +G + +  TY+ +I+GLC   
Sbjct: 181 EMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKH 240

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV------CLP 415
            +  A      M+   C P+   Y  L++  C  G I   L+L ++M +        C P
Sbjct: 241 RISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKP 300

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
            L +Y+I+I  +   ++ D+   A +L  EM  +G MP   ++  +++G  L G    AK
Sbjct: 301 TLISYSIIIDGLCKDRREDE---ARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAK 357



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 159/314 (50%), Gaps = 21/314 (6%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH----------GCRQSLNSFN 177
           +M+ L   P   T A + +    +G     +KI L +H++           C+ +  S++
Sbjct: 432 KMQKLGCMPNVVTCATLMKGLCQSGN----IKIALELHKNMLSDTSPYGINCKPNAISYS 487

Query: 178 TILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
            I+D LCK  + ++A  LFK  +      DVISY  + +G+C   +   A  +  EMVD 
Sbjct: 488 IIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDI 547

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           G+ P++TT+++++    + G++ EA      M +R C  + VTYTT+V G  +   I  A
Sbjct: 548 GVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEA 607

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV------GKGYMPNSTTY 350
             +F  M   G LP V TY  +++ LC+  +++ A+ + ++M+      G  + P+  +Y
Sbjct: 608 TQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISY 667

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           +++I GLC  G  + A E    MK     PNV +Y  LI  FC +G++E    LF +M  
Sbjct: 668 SIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVD 727

Query: 411 GVCLPNLDTYNILI 424
                N  TY+++I
Sbjct: 728 QGVQLNAVTYSVMI 741



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 144/280 (51%), Gaps = 9/280 (3%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   +++II +     G+ D A ++F  M   G    + S+ +++   C+  K + A  L
Sbjct: 481 PNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYL 540

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F ++     + DV +++V+ +  C   +  +A E+L+ M+ RG  PN  TY  ++KG   
Sbjct: 541 FNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCM 600

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG------GV 308
             +I EA + F++M+K  C  DVVTY T++ G    G IK A  +   M++         
Sbjct: 601 NDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNF 660

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
            P V +Y+ +I  LCK    + A  +F+EM   G +PN  +Y  +I G C +G++E A  
Sbjct: 661 KPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKH 720

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
               M D   + N  TY+++I  FC  G+I++   LF+KM
Sbjct: 721 LFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA--LFQKM 758



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 147/289 (50%), Gaps = 13/289 (4%)

Query: 91  NILSYHPTYAHS--PSSFDHAIDLAARLRDYRT--VWTLVHRMKSLSLGPTQKTFAIIAE 146
           N+LS    Y  +  P++  ++I +    +  R      L   MK+L + P   ++  +  
Sbjct: 467 NMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIH 526

Query: 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFK 204
            +  +GK   A  +F  M + G +  + +F+ ++D+LCKE KV +A  L +V   RG   
Sbjct: 527 GFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCI- 585

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
            + ++Y  +  G C+  R ++A ++  +M   G  P++ TY  ++KG  + G I+ A   
Sbjct: 586 PNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALEL 645

Query: 265 FLEMKKRKCEI------DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
             +M     +       DV++Y+ I+ G    G    AR +F  M   GV+P+V +Y ++
Sbjct: 646 HKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSL 705

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           I   C+   +E+A  +F EMV +G   N+ TY+V+I G C  G++++AL
Sbjct: 706 IHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKAL 754


>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
          Length = 799

 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 105/354 (29%), Positives = 172/354 (48%), Gaps = 12/354 (3%)

Query: 116 LRDYRTVWTLVHRM--KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
           L +  T   L+  M  + L L P   T  I        G+   AV++   M  HG     
Sbjct: 298 LSELETAIKLLSEMAARGLELNPVAYTSVIAL--LCDEGQVSDAVRVVEDMVMHGVVLDA 355

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKE 232
             F T++   C++  +  A N F   + +   AD ++Y  + NG C      +A  VL+E
Sbjct: 356 AVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQE 415

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M D+GL+ +  TY +++ GY + G++ EA+    +M +++   +VVTYT +  G    G+
Sbjct: 416 MEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGD 475

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           +  A  +   M + G+  ++ TYN++I  LCK  ++E A+    +M   G  P+  TY  
Sbjct: 476 VCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTT 535

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           +I  LC + E++RA   +  M D   +P + TYN+L+  FC +G +E G  L E M    
Sbjct: 536 IIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKN 595

Query: 413 CLPNLDTYNILISSMFVRK--KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
             PN  TYN L+    + K  KS   +  G L  E+V     P + T+N ++ G
Sbjct: 596 IHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVV-----PNENTYNILIKG 644



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/389 (28%), Positives = 173/389 (44%), Gaps = 48/389 (12%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+ R++   + P+ ++   +  R       D AV++F  + E    ++  S+N +L  LC
Sbjct: 213 LLLRLRQYGISPSPESCNAVLCRL----PLDEAVQLFQELPE----KNTCSYNILLKALC 264

Query: 185 KEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
              +++ A+ LF         DV++Y ++ +G+C +     A+++L EM  RGL  N   
Sbjct: 265 TAGRIKDAHQLFDEMASP--PDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVA 322

Query: 245 YN-----------------------------------IVLKGYFRAGQIEEAWRFFLEMK 269
           Y                                     V+ G+ R G +  A  +F EM+
Sbjct: 323 YTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQ 382

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
           KR    D VTYT +++G    GE+K A  V   M + G+     TY  +I   CK   + 
Sbjct: 383 KRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMT 442

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
            A LV  +MV K   PN  TY  +  GLC  G++  A E +  M     E N+ TYN LI
Sbjct: 443 EAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLI 502

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
              C AG +E+ +     M      P++ TY  +I ++   K+ D    A  LL EM+D+
Sbjct: 503 NGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDR---AHSLLQEMLDK 559

Query: 450 GFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           G  P   T+N ++NG  + G     K +L
Sbjct: 560 GIKPTIVTYNVLMNGFCMSGRVEGGKRLL 588



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 148/314 (47%), Gaps = 13/314 (4%)

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG 216
           +  + L + ++G   S  S N +L  L     +++A  LF+    K   +  SYN++   
Sbjct: 210 SAPLLLRLRQYGISPSPESCNAVLCRL----PLDEAVQLFQELPEK---NTCSYNILLKA 262

Query: 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID 276
            C   R   A ++  EM      P++ TY I++ GY    ++E A +   EM  R  E++
Sbjct: 263 LCTAGRIKDAHQLFDEMAS---PPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELN 319

Query: 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE 336
            V YT+++      G++  A  V + MV  GV+   A +  ++   C+K  +  A   F+
Sbjct: 320 PVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFD 379

Query: 337 EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
           EM  +G   +  TY  +I GLC  GE++ A   +  M+D   + +  TY +LI  +C  G
Sbjct: 380 EMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVG 439

Query: 397 EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
           ++     +  KM      PN+ TY  L   +    K  D+  A +LL EM  +G     F
Sbjct: 440 KMTEAFLVHNKMVQKRVTPNVVTYTALSDGLC---KQGDVCAANELLHEMCSKGLELNIF 496

Query: 457 TFNRVLNGLLLIGN 470
           T+N ++NGL   GN
Sbjct: 497 TYNSLINGLCKAGN 510



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 150/355 (42%), Gaps = 36/355 (10%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M+   L     T+  +      AG+   A ++   M + G      ++  ++D  CK  K
Sbjct: 381 MQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGK 440

Query: 189 VEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           + +A+ +  K+ + +   +V++Y  +++G C       A E+L EM  +GL  N+ TYN 
Sbjct: 441 MTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNS 500

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ G  +AG +E+A R  ++M +   + DV TYTTI+       E+ RA ++   M++ G
Sbjct: 501 LINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKG 560

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY----------------- 350
           + P++ TYN ++   C    VE    + E M+ K   PN+TTY                 
Sbjct: 561 IKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTT 620

Query: 351 ------------------NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
                             N++I+G C    M+ AL F   M +        +YN LIR  
Sbjct: 621 EIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLL 680

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
               +      LFEKM         D YN  I   F     +  L     L+E+ 
Sbjct: 681 NKKKKFTEARRLFEKMRKDRLTAEPDVYNFYIDLSFNEDNLESTLALCDELVEVT 735



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 6/169 (3%)

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           +  +YN +++ LC    +++A  +F+EM      P+  TY +++ G C   E+E A++ +
Sbjct: 252 NTCSYNILLKALCTAGRIKDAHQLFDEMASP---PDVVTYGIMVHGYCTLSELETAIKLL 308

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
             M     E N   Y  +I   CD G++   + + E M     + +   +  ++S  F R
Sbjct: 309 SEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSG-FCR 367

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           K   DL  A     EM  RG      T+  ++NGL   G    A+ +L+
Sbjct: 368 K--GDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQ 414


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 98/343 (28%), Positives = 170/343 (49%), Gaps = 4/343 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           PT  T+ I+ E  +  G  + A+K+   M   G    + ++N I+  +CKE  VE+A  L
Sbjct: 215 PTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAEL 274

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
                 K  + DVISYN++   +    + ++  +++ EM  RG  PN  TY+I++    R
Sbjct: 275 ITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCR 334

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G+I+EA      M +++   D  +Y  ++      G +  A  + D M++ G LP +  
Sbjct: 335 FGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVN 394

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN ++  LCK  +   A+ +F ++ G G  PN ++YN +I  L   G+  RAL  V  M 
Sbjct: 395 YNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMI 454

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
               +P+  TYN LI   C  G +E  + L + M      P + +YNI++  +   ++ D
Sbjct: 455 SKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRID 514

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
           D   A  +  EM+++G  P + T+  ++ G+   G +  A E+
Sbjct: 515 D---AIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMEL 554



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 170/346 (49%), Gaps = 7/346 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P    +  +   +    + + A ++   M   G    + ++N ++  LC  +K+  A  +
Sbjct: 145 PDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTV 204

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             ++        VI+Y ++     +    N+A+++L+EM+ RGL P++ TYN +++G  +
Sbjct: 205 LDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCK 264

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G +E A      +  + CE DV++Y  ++  F   G+      +   M + G  P+  T
Sbjct: 265 EGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVT 324

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y+ +I  LC+   ++ AI V + M+ K   P++ +Y+ +I  LC  G ++ A+  +  M 
Sbjct: 325 YSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMI 384

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
            + C P++  YN ++   C  G   + LE+F K+    C PN+ +YN +IS+++      
Sbjct: 385 SNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALW---SCG 441

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           D   A  ++  M+ +G  P + T+N +++ L      GL +E + L
Sbjct: 442 DRSRALGMVPAMISKGIDPDEITYNSLISCLC---RDGLVEEAIGL 484



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 160/311 (51%), Gaps = 5/311 (1%)

Query: 179 ILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           +L+  CK  K  ++    +    K +  DVI    +  G+   K   KA  V+ E+++  
Sbjct: 84  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVM-EILESH 142

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
             P++  YN V+ G+ +  QIE A +    MK R    D+VTY  ++       ++  A 
Sbjct: 143 TEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLAL 202

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
            V D ++    +P+V TY  +I+    +  +  A+ + EEM+ +G +P+  TYN +IRG+
Sbjct: 203 TVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGM 262

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
           C  G +ERA E +  +    CEP+V +YNIL+R F + G+ + G +L  +M S  C PN 
Sbjct: 263 CKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNK 322

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
            TY+ILISS+    + D+ +   K++IE   +   P  ++++ +++ L   G   LA  I
Sbjct: 323 VTYSILISSLCRFGRIDEAISVLKVMIE---KELTPDTYSYDPLISALCKEGRLDLAIGI 379

Query: 478 LRLQSRCGRLP 488
           +      G LP
Sbjct: 380 MDYMISNGCLP 390



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 139/287 (48%), Gaps = 1/287 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  + S    P   ++ I+   +++ GK D   K+   M   GC  +  +++ ++  LC
Sbjct: 274 LITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLC 333

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           +  ++++A ++ KV   K    D  SY+ + +  C   R + A+ ++  M+  G  P++ 
Sbjct: 334 RFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIV 393

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            YN +L    + G   +A   F +++   C  +V +Y T++      G+  RA  +   M
Sbjct: 394 NYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAM 453

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           ++ G+ P   TYN++I  LC+   VE AI + ++M   G+ P   +YN+V+ GLC    +
Sbjct: 454 ISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRI 513

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           + A+     M +  C PN  TY +LI     AG     +EL   + S
Sbjct: 514 DDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSLFS 560



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 153/321 (47%), Gaps = 2/321 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M +  L P   T+  I       G  +RA ++  S+   GC   + S+N +L    
Sbjct: 239 LLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFL 298

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            + K ++   L  ++F    + + ++Y+++ +  C   R ++A+ VLK M+++ L P+  
Sbjct: 299 NQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTY 358

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           +Y+ ++    + G+++ A      M    C  D+V Y TI+      G   +A  +F+ +
Sbjct: 359 SYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKL 418

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G  P+V++YN MI  L        A+ +   M+ KG  P+  TYN +I  LC  G +
Sbjct: 419 RGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLV 478

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           E A+  +  M+     P V +YNI++   C    I+  + +F +M    C PN  TY +L
Sbjct: 479 EEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILL 538

Query: 424 ISSM-FVRKKSDDLLVAGKLL 443
           I  + F   +++ + +A  L 
Sbjct: 539 IEGIGFAGWRTEAMELANSLF 559



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 91/199 (45%), Gaps = 14/199 (7%)

Query: 98  TYAHSP--SSF--DHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGK 153
           TY++ P  S+   +  +DLA  + DY         M S    P    +  I       G 
Sbjct: 357 TYSYDPLISALCKEGRLDLAIGIMDY---------MISNGCLPDIVNYNTILAALCKNGN 407

Query: 154 ADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNV 212
           A++A++IF  +   GC  +++S+NT++  L       +A  +      K    D I+YN 
Sbjct: 408 ANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNS 467

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           + +  C      +A+ +L +M   G  P + +YNIVL G  +  +I++A   F EM ++ 
Sbjct: 468 LISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKG 527

Query: 273 CEIDVVTYTTIVHGFGVVG 291
           C  +  TY  ++ G G  G
Sbjct: 528 CRPNETTYILLIEGIGFAG 546


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 183/369 (49%), Gaps = 4/369 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S  +  D   +L      W     +      P    F ++  R     K + A  +F  +
Sbjct: 192 SCGYLFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEI 251

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRT 223
            + G R ++ SFNT+++  CK   +++ + L + +   +   DV +Y+V+ NG C   + 
Sbjct: 252 GKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQL 311

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A ++  EM DRGL PN  T+  ++ G+   G+ +     + +M ++  + DV+TY T+
Sbjct: 312 DDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTL 371

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++G   VG+++ A+ +   M   G+ P   TY  +I   CK+  +E+A+ + +EMV +G 
Sbjct: 372 INGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGI 431

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
             ++  +  +I G C  G++  A   +  M +   +P+  TY ++I  FC  G+++ G +
Sbjct: 432 ELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFK 491

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           L ++M     +P + TYN+L++ +    K   +  A  LL  M++ G +P   T+N +L 
Sbjct: 492 LLKEMQCDGHVPGVVTYNVLLNGLC---KQGQMKNANMLLDAMLNLGVVPDDITYNILLE 548

Query: 464 GLLLIGNQG 472
             L    QG
Sbjct: 549 RTLQAWKQG 557



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 99/315 (31%), Positives = 162/315 (51%), Gaps = 6/315 (1%)

Query: 176 FNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           FN ++  LCKE K+ +A  LF ++ +   +  V+S+N + NG+C     ++   + + M+
Sbjct: 228 FNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMM 287

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
           +  + P++ TY++++ G  + GQ+++A + FLEM  R    + VT+TT+++G  V G   
Sbjct: 288 ENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRAD 347

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
               ++  M+  GV P V TYN +I  LCK   +  A  +  EM  +G  P+  TY ++I
Sbjct: 348 LGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLI 407

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE-IERGLELFEKMGSGVC 413
            G C  G++E ALE    M  +  E +   +  LI  FC  G+ IE    L E + +G+ 
Sbjct: 408 DGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGI- 466

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGL 473
            P+  TY ++I       K  D+    KLL EM   G +P   T+N +LNGL   G    
Sbjct: 467 KPDDATYTMVIHGFC---KKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKN 523

Query: 474 AKEILRLQSRCGRLP 488
           A  +L      G +P
Sbjct: 524 ANMLLDAMLNLGVVP 538



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 153/331 (46%), Gaps = 23/331 (6%)

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-------------VF------RGKFKAD 206
           +H  R S++S+ T+   LC  K + +A +L +             VF      RG  +++
Sbjct: 96  QHHFRLSIHSYCTMTHFLCTHKMLSEAQSLLQFVVSRKGKNSASSVFTSVLEARGTHQSN 155

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           ++ ++V+ N +      + A++  + +    L     +   +     +      AW F+ 
Sbjct: 156 LV-FSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYE 214

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           E+       DV  +  ++H      +I  A+ +F  +   G+ P+V ++N +I   CK  
Sbjct: 215 EILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSG 274

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
           +++    +   M+     P+  TY+V+I GLC  G+++ A +    M D    PN  T+ 
Sbjct: 275 NLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFT 334

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            LI   C  G  + G+E++++M      P++ TYN LI+ +    K  DL  A KL+IEM
Sbjct: 335 TLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLC---KVGDLREAKKLVIEM 391

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
             RG  P KFT+  +++G    G+   A EI
Sbjct: 392 TQRGLKPDKFTYTMLIDGCCKEGDLESALEI 422


>gi|15217608|ref|NP_171708.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806399|sp|O81908.2|PPR2_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g02060, chloroplastic; Flags: Precursor
 gi|332189251|gb|AEE27372.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 125/463 (26%), Positives = 215/463 (46%), Gaps = 58/463 (12%)

Query: 78  RLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPT 137
           RL       L FF+ +S +  ++H   SF   ++   R R+       +  ++  S G  
Sbjct: 76  RLIKVPADGLRFFDWVS-NKGFSHKEQSFFLMLEFLGRARNLNVARNFLFSIERRSNGCV 134

Query: 138 Q---KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN 194
           +   + F  +   Y +AG    +VK+F +M + G   S+ +FN++L +L K  +   A++
Sbjct: 135 KLQDRYFNSLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHD 194

Query: 195 LFKVFRGKFKA--DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
           LF   R  +    D  ++N + NG+C     ++A  + K+M     NP++ TYN ++ G 
Sbjct: 195 LFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGL 254

Query: 253 FRAGQIEEAWRFFLEMKKRKCEI--DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
            RAG+++ A      M K+  ++  +VV+YTT+V G+ +  EI  A  VF  M++ G+ P
Sbjct: 255 CRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKP 314

Query: 311 SVATYNAMIQVL-------------------------------------CKKDSVENAIL 333
           +  TYN +I+ L                                     C    ++ A+ 
Sbjct: 315 NAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMK 374

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD-------DECEPNVQTYN 386
           VF+EM+     P+S +Y+V+IR LC   E +RA      + +       DEC+P    YN
Sbjct: 375 VFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVLLGKDECKPLAAAYN 434

Query: 387 ILIRYFCDAGEIERGLELFEK-MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
            +  Y C  G+ ++  ++F + M  GV  P   +Y  LI+      +      A +LL+ 
Sbjct: 435 PMFEYLCANGKTKQAEKVFRQLMKRGVQDP--PSYKTLITG---HCREGKFKPAYELLVL 489

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           M+ R F+P   T+  +++GLL IG   LA + L+   R   LP
Sbjct: 490 MLRREFVPDLETYELLIDGLLKIGEALLAHDTLQRMLRSSYLP 532



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 163/352 (46%), Gaps = 24/352 (6%)

Query: 130 KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV 189
           ++  + P   TF  +   +      D A +IF  M  + C   + ++NTI+D LC+  KV
Sbjct: 201 RTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKV 260

Query: 190 EKAYNLFKVFRGKFKA------DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           + A+N   V  G  K       +V+SY  +  G+C+ +  ++A+ V  +M+ RGL PN  
Sbjct: 261 KIAHN---VLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPNAV 317

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI--DVVTYTTIVHGFGVVGEIKRARNVFD 301
           TYN ++KG   A + +E     +           D  T+  ++      G +  A  VF 
Sbjct: 318 TYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMKVFQ 377

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM-------PNSTTYNVVI 354
            M+N  + P  A+Y+ +I+ LC ++  + A  +F E+  K  +       P +  YN + 
Sbjct: 378 EMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVLLGKDECKPLAAAYNPMF 437

Query: 355 RGLCHTGEMERALE-FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
             LC  G+ ++A + F   MK    +P   +Y  LI   C  G+ +   EL   M     
Sbjct: 438 EYLCANGKTKQAEKVFRQLMKRGVQDP--PSYKTLITGHCREGKFKPAYELLVLMLRREF 495

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           +P+L+TY +LI  +    K  + L+A   L  M+   ++P   TF+ VL  L
Sbjct: 496 VPDLETYELLIDGLL---KIGEALLAHDTLQRMLRSSYLPVATTFHSVLAEL 544



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 144/326 (44%), Gaps = 15/326 (4%)

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
           +  P   TF I+ + +  AG  D A+K+F  M          S++ ++  LC   + ++A
Sbjct: 348 TFAPDACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRA 407

Query: 193 YNLF------KVFRGK--FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
             LF      +V  GK   K    +YN +    C   +T +A +V ++++ RG+  +  +
Sbjct: 408 ETLFNELFEKEVLLGKDECKPLAAAYNPMFEYLCANGKTKQAEKVFRQLMKRGVQ-DPPS 466

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           Y  ++ G+ R G+ + A+   + M +R+   D+ TY  ++ G   +GE   A +    M+
Sbjct: 467 YKTLITGHCREGKFKPAYELLVLMLRREFVPDLETYELLIDGLLKIGEALLAHDTLQRML 526

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
               LP   T+++++  L K+     +  +   M+ K    N      V+R L  + + E
Sbjct: 527 RSSYLPVATTFHSVLAELAKRKFANESFCLVTLMLEKRIRQNIDLSTQVVRLLFSSAQKE 586

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
           +A   V  + D+     ++    L+ Y C+  ++     L         + ++DT N +I
Sbjct: 587 KAFLIVRLLYDNGYLVKMEE---LLGYLCENRKLLDAHTLVLFCLEKSQMVDIDTCNTVI 643

Query: 425 SSMFVRKKSDDLLVAGKLLIEMVDRG 450
             +   K+  +   A  L  E+V+ G
Sbjct: 644 EGLCKHKRHSE---AFSLYNELVELG 666


>gi|255548994|ref|XP_002515553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545497|gb|EEF47002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 927

 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 121/469 (25%), Positives = 214/469 (45%), Gaps = 60/469 (12%)

Query: 62  CPSLHWTPQLVDQIIK--------RLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLA 113
           CP++     L+   +K        +L++ A+ A    NI +Y+        S    +   
Sbjct: 416 CPTVFIVNSLIRGFLKVESREEASKLFDEAV-ACDIANIFTYN--------SLLSWLCKE 466

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            ++ +  T+W    +M    L PT+ ++  +   +   G  D A  +F  M + G + ++
Sbjct: 467 GKMSEATTLW---QKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVFSDMLDCGLKPNV 523

Query: 174 NSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
            +++ ++D   K    E A+ +F ++          +YN+  NG C V RT++A ++LK+
Sbjct: 524 ITYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDFTYNIKINGLCKVGRTSEAQDMLKK 583

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
            V++G  P   TYN ++ G+ + G +  A   + EM +     +V+TYTT+++GF     
Sbjct: 584 FVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCKNNN 643

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
              A  + + M N G+   +A Y A+I   CKK  +E A  +F E++  G  PNS  YN 
Sbjct: 644 TDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQDIETASWLFSELLDGGLSPNSVIYNS 703

Query: 353 VIRGLCHTGEMERALEFVGRMKDD--ECE------------------------------- 379
           +I G  +   ME AL    RM  +   C+                               
Sbjct: 704 LISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTLIDGLLKEGRLVLALDLYSEMSAKG 763

Query: 380 --PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
             P++  Y +LI   C  G++E   ++  +M      PN+  YN LI+  F   K+ +L 
Sbjct: 764 IIPDIIIYTVLINGLCGKGQLENAQKILAEMERDSITPNVPIYNALIAGHF---KAGNLQ 820

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGR 486
            A +L  EM+D+G  P   T++ ++NG +  GN  L K +L L+ + G+
Sbjct: 821 EAFRLHNEMLDKGLTPNDTTYDILINGKIKGGNSAL-KSLLSLKFKDGK 868



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 169/356 (47%), Gaps = 6/356 (1%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           +M      P + T+A++ E     G   +A  ++  M       ++   N+++    K +
Sbjct: 374 KMNENGPSPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKNKNICPTVFIVNSLIRGFLKVE 433

Query: 188 KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
             E+A  LF        A++ +YN + +  C   + ++A  + ++M+D+GL P   +YN 
Sbjct: 434 SREEASKLFDEAVACDIANIFTYNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNS 493

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ G+ R G ++ A   F +M     + +V+TY+ ++ G+   G+ + A  VFD MV+  
Sbjct: 494 MILGHCRQGNLDMAASVFSDMLDCGLKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDEN 553

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           ++PS  TYN  I  LCK      A  + ++ V KG++P   TYN ++ G    G +  AL
Sbjct: 554 IVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSAL 613

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
                M +    PNV TY  LI  FC     +  L++  +M +     ++  Y  LI   
Sbjct: 614 TAYREMCESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDG- 672

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           F +K+  D+  A  L  E++D G  P    +N +++G   + N   A   L LQ R
Sbjct: 673 FCKKQ--DIETASWLFSELLDGGLSPNSVIYNSLISGYRNLNNMEAA---LNLQKR 723



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 169/349 (48%), Gaps = 5/349 (1%)

Query: 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL-FKVF 199
           ++I+ + +      + A  +   M + G   S  +F +++    K+  + +A  L  ++ 
Sbjct: 282 YSIVIQAFCKNLDVELACGLLKDMRDKGWVPSEGTFTSVIGACVKQGNMVEALRLKDEMV 341

Query: 200 RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
               + +V+    +  G+C   +   ALE   +M + G +PN  TY ++++   + G + 
Sbjct: 342 SCGVQMNVVVATTLVKGYCKQDKLVSALEFFDKMNENGPSPNRVTYAVLIEWCCKNGNMA 401

Query: 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319
           +A+  + +MK +     V    +++ GF  V   + A  +FD  V   +  ++ TYN+++
Sbjct: 402 KAYDLYTQMKNKNICPTVFIVNSLIRGFLKVESREEASKLFDEAVACDI-ANIFTYNSLL 460

Query: 320 QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
             LCK+  +  A  ++++M+ KG  P   +YN +I G C  G ++ A      M D   +
Sbjct: 461 SWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVFSDMLDCGLK 520

Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA 439
           PNV TY+IL+  +   G+ E    +F++M     +P+  TYNI I+ +    ++ +   A
Sbjct: 521 PNVITYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDFTYNIKINGLCKVGRTSE---A 577

Query: 440 GKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             +L + V++GF+P   T+N +++G +  G+   A    R     G  P
Sbjct: 578 QDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVSP 626



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 163/353 (46%), Gaps = 11/353 (3%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           T  I+    +     + A K FL     G +    +++ ++   CK   VE A  L K  
Sbjct: 246 TVHIMMRANLKDNNEEEAKKFFLEAKSRGVKLDAAAYSIVIQAFCKNLDVELACGLLKDM 305

Query: 200 RGK--FKADVISYNVIANGWCLVKRTN--KALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
           R K    ++    +VI  G C VK+ N  +AL +  EMV  G+  N+     ++KGY + 
Sbjct: 306 RDKGWVPSEGTFTSVI--GAC-VKQGNMVEALRLKDEMVSCGVQMNVVVATTLVKGYCKQ 362

Query: 256 GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
            ++  A  FF +M +     + VTY  ++      G + +A +++  M N  + P+V   
Sbjct: 363 DKLVSALEFFDKMNENGPSPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKNKNICPTVFIV 422

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           N++I+   K +S E A  +F+E V    + N  TYN ++  LC  G+M  A     +M D
Sbjct: 423 NSLIRGFLKVESREEASKLFDEAVACD-IANIFTYNSLLSWLCKEGKMSEATTLWQKMLD 481

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
               P   +YN +I   C  G ++    +F  M      PN+ TY+IL+   F   K+ D
Sbjct: 482 KGLAPTKVSYNSMILGHCRQGNLDMAASVFSDMLDCGLKPNVITYSILMDGYF---KNGD 538

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
              A  +   MVD   +P  FT+N  +NGL  +G    A+++L+     G +P
Sbjct: 539 TEYAFYVFDRMVDENIVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFVP 591



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 137/298 (45%), Gaps = 37/298 (12%)

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           +A EV ++MV +G++ +  T +I+++   +    EEA +FFLE K R  ++D   Y+ ++
Sbjct: 227 EAREVYEKMVLKGVHGDCFTVHIMMRANLKDNNEEEAKKFFLEAKSRGVKLDAAAYSIVI 286

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
             F    +++ A  +   M + G +PS  T+ ++I    K+ ++  A+ + +EMV  G  
Sbjct: 287 QAFCKNLDVELACGLLKDMRDKGWVPSEGTFTSVIGACVKQGNMVEALRLKDEMVSCGVQ 346

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
            N      +++G C   ++  ALEF  +M ++   PN  TY +LI + C  G + +  +L
Sbjct: 347 MNVVVATTLVKGYCKQDKLVSALEFFDKMNENGPSPNRVTYAVLIEWCCKNGNMAKAYDL 406

Query: 405 FEKM-GSGVC---------------------------------LPNLDTYNILISSMFVR 430
           + +M    +C                                 + N+ TYN L+S +   
Sbjct: 407 YTQMKNKNICPTVFIVNSLIRGFLKVESREEASKLFDEAVACDIANIFTYNSLLSWLCKE 466

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            K  +   A  L  +M+D+G  P K ++N ++ G    GN  +A  +      CG  P
Sbjct: 467 GKMSE---ATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVFSDMLDCGLKP 521



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 85/187 (45%), Gaps = 3/187 (1%)

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
           F    K+   + D+  Y  +++ +    ++  A   F+ +V   ++P +   N ++  L 
Sbjct: 161 FIGSTKRFDFDSDIRIYNYLLNSYIKANKLNDAIGCFNRLVESDIVPWIKFLNFLLTALV 220

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
           K D +  A  V+E+MV KG   +  T ++++R        E A +F    K    + +  
Sbjct: 221 KNDMIYEAREVYEKMVLKGVHGDCFTVHIMMRANLKDNNEEEAKKFFLEAKSRGVKLDAA 280

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
            Y+I+I+ FC   ++E    L + M     +P+  T+  +I +     K  +++ A +L 
Sbjct: 281 AYSIVIQAFCKNLDVELACGLLKDMRDKGWVPSEGTFTSVIGACV---KQGNMVEALRLK 337

Query: 444 IEMVDRG 450
            EMV  G
Sbjct: 338 DEMVSCG 344


>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
          Length = 799

 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 105/354 (29%), Positives = 172/354 (48%), Gaps = 12/354 (3%)

Query: 116 LRDYRTVWTLVHRM--KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
           L +  T   L+  M  + L L P   T  I        G+   AV++   M  HG     
Sbjct: 298 LSELETAIKLLSEMAARGLELNPVAYTSVIAL--LCDEGQVSDAVRVVEDMVMHGVVLDA 355

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKE 232
             F T++   C++  +  A N F   + +   AD ++Y  + NG C      +A  VL+E
Sbjct: 356 AVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQE 415

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M D+GL+ +  TY +++ GY + G++ EA+    +M +++   +VVTYT +  G    G+
Sbjct: 416 MEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGD 475

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           +  A  +   M + G+  ++ TYN++I  LCK  ++E A+    +M   G  P+  TY  
Sbjct: 476 VCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTT 535

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           +I  LC + E++RA   +  M D   +P + TYN+L+  FC +G +E G  L E M    
Sbjct: 536 IIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKN 595

Query: 413 CLPNLDTYNILISSMFVRK--KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
             PN  TYN L+    + K  KS   +  G L  E+V     P + T+N ++ G
Sbjct: 596 IHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVV-----PNENTYNILIKG 644



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/389 (28%), Positives = 173/389 (44%), Gaps = 48/389 (12%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+ R++   + P+ ++   +  R       D AV++F  + E    ++  S+N +L  LC
Sbjct: 213 LLLRLRQYGISPSPESCNAVLCRL----PLDEAVQLFQELPE----KNTCSYNILLKALC 264

Query: 185 KEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
              +++ A+ LF         DV++Y ++ +G+C +     A+++L EM  RGL  N   
Sbjct: 265 TAGRIKDAHQLFDEMASP--PDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVA 322

Query: 245 YN-----------------------------------IVLKGYFRAGQIEEAWRFFLEMK 269
           Y                                     V+ G+ R G +  A  +F EM+
Sbjct: 323 YTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQ 382

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
           KR    D VTYT +++G    GE+K A  V   M + G+     TY  +I   CK   + 
Sbjct: 383 KRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMT 442

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
            A LV  +MV K   PN  TY  +  GLC  G++  A E +  M     E N+ TYN LI
Sbjct: 443 EAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLI 502

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
              C AG +E+ +     M      P++ TY  +I ++   K+ D    A  LL EM+D+
Sbjct: 503 NGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDR---AHSLLQEMLDK 559

Query: 450 GFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           G  P   T+N ++NG  + G     K +L
Sbjct: 560 GIKPTIVTYNVLMNGFCMSGRVEGGKRLL 588



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 148/314 (47%), Gaps = 13/314 (4%)

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG 216
           +  + L + ++G   S  S N +L  L     +++A  LF+    K   +  SYN++   
Sbjct: 210 SAPLLLRLRQYGISPSPESCNAVLCRL----PLDEAVQLFQELPEK---NTCSYNILLKA 262

Query: 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID 276
            C   R   A ++  EM      P++ TY I++ GY    ++E A +   EM  R  E++
Sbjct: 263 LCTAGRIKDAHQLFDEMAS---PPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELN 319

Query: 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE 336
            V YT+++      G++  A  V + MV  GV+   A +  ++   C+K  +  A   F+
Sbjct: 320 PVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFD 379

Query: 337 EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
           EM  +G   +  TY  +I GLC  GE++ A   +  M+D   + +  TY +LI  +C  G
Sbjct: 380 EMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVG 439

Query: 397 EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
           ++     +  KM      PN+ TY  L   +    K  D+  A +LL EM  +G     F
Sbjct: 440 KMTEAFLVHNKMVQKRVTPNVVTYTALSDGLC---KQGDVCAANELLHEMCSKGLELNIF 496

Query: 457 TFNRVLNGLLLIGN 470
           T+N ++NGL   GN
Sbjct: 497 TYNSLINGLCKAGN 510



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 150/355 (42%), Gaps = 36/355 (10%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M+   L     T+  +      AG+   A ++   M + G      ++  ++D  CK  K
Sbjct: 381 MQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGK 440

Query: 189 VEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           + +A+ +  K+ + +   +V++Y  +++G C       A E+L EM  +GL  N+ TYN 
Sbjct: 441 MTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNS 500

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ G  +AG +E+A R  ++M +   + DV TYTTI+       E+ RA ++   M++ G
Sbjct: 501 LINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKG 560

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY----------------- 350
           + P++ TYN ++   C    VE    + E M+ K   PN+TTY                 
Sbjct: 561 IKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTT 620

Query: 351 ------------------NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
                             N++I+G C    M+ AL F   M +        +YN LIR  
Sbjct: 621 EIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLL 680

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
               +      LFEKM         D YN  I   F     +  L     L+E+ 
Sbjct: 681 NKKKKFTEARRLFEKMRKERLTAEPDVYNFYIDLSFNEDNLESTLALCDELVEVT 735



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 6/169 (3%)

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           +  +YN +++ LC    +++A  +F+EM      P+  TY +++ G C   E+E A++ +
Sbjct: 252 NTCSYNILLKALCTAGRIKDAHQLFDEMASP---PDVVTYGIMVHGYCTLSELETAIKLL 308

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
             M     E N   Y  +I   CD G++   + + E M     + +   +  ++S  F R
Sbjct: 309 SEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSG-FCR 367

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           K   DL  A     EM  RG      T+  ++NGL   G    A+ +L+
Sbjct: 368 K--GDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQ 414


>gi|297816088|ref|XP_002875927.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321765|gb|EFH52186.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 657

 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 128/524 (24%), Positives = 218/524 (41%), Gaps = 108/524 (20%)

Query: 75  IIKRLWNHALK--ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSL 132
           ++KRL   +    ALHFF  ++    + H+P +F+  I   A      +V  L+ +MK  
Sbjct: 45  VLKRLRQESCVPLALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQ 104

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL--------- 183
               ++  F  +   Y   G A+RAV++F  + E GC  S+  +N +LD L         
Sbjct: 105 GFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMI 164

Query: 184 --------------------------CKEKKVEKAYNLF--------------------- 196
                                     CK  KV+ A  L                      
Sbjct: 165 YMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPNAVSYTTVISS 224

Query: 197 ----------KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
                     +    +F+  V  YN + NG C  +     +E++ EMV++G++PN+ +Y+
Sbjct: 225 MCEVGMVKEGRQLAERFEPVVSVYNALINGLCKERDYKGGVELMSEMVEKGISPNVISYS 284

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKC--------------------------------- 273
            ++     +GQIE A+    +M KR C                                 
Sbjct: 285 TLINELSNSGQIELAFSLLAQMLKRGCHPNIHTLSSLVKGCFVRGTTFDALDMWNQMIRG 344

Query: 274 ---EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
              + +VV Y T+V GF   G I +A +VF  M   G  P++ TY ++I    K+ S+E 
Sbjct: 345 FGLQPNVVAYNTLVQGFCSHGNIDKAVSVFLHMEEIGCSPNIRTYGSLINGFTKRGSLEG 404

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           A+ ++ +M+  G  PN   Y  ++  LC   + + A   +  M  + C P+V T+N  I+
Sbjct: 405 AVYIWNKMLTSGCCPNVVVYTSMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIK 464

Query: 391 YFCDAGEIERGLELFEKMGSGV-CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
             CDAG ++   ++F +M     C PN+ TYN L+  +    K++ +  A  L  E+  R
Sbjct: 465 GLCDAGRLDWAEKVFRQMEQQYRCPPNIVTYNELLDGL---AKANRIEEAYGLTREIFMR 521

Query: 450 GFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQFKL 493
           G      T+N +L+G    G  G+A +++      G+ P +  +
Sbjct: 522 GVEWSTSTYNTLLHGSCNAGLPGIALQLVGKMMVNGKSPDEITM 565



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 173/371 (46%), Gaps = 16/371 (4%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           S ++  I+   + RDY+    L+  M    + P   +++ +     ++G+ + A  +   
Sbjct: 246 SVYNALINGLCKERDYKGGVELMSEMVEKGISPNVISYSTLINELSNSGQIELAFSLLAQ 305

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRG-KFKADVISYNVIANGWCLVK 221
           M + GC  ++++ ++++           A +++ ++ RG   + +V++YN +  G+C   
Sbjct: 306 MLKRGCHPNIHTLSSLVKGCFVRGTTFDALDMWNQMIRGFGLQPNVVAYNTLVQGFCSHG 365

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
             +KA+ V   M + G +PN+ TY  ++ G+ + G +E A   + +M    C  +VV YT
Sbjct: 366 NIDKAVSVFLHMEEIGCSPNIRTYGSLINGFTKRGSLEGAVYIWNKMLTSGCCPNVVVYT 425

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
           ++V       + K A ++ + M      PSV T+NA I+ LC    ++ A  VF +M  +
Sbjct: 426 SMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQ 485

Query: 342 GYMP-NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
              P N  TYN ++ GL     +E A      +     E +  TYN L+   C+AG    
Sbjct: 486 YRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSTSTYNTLLHGSCNAGLPGI 545

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD------DLLVAGKLLIEMVDRGFMPR 454
            L+L  KM      P+  T N++I +   + K++      DL+  G+       R + P 
Sbjct: 546 ALQLVGKMMVNGKSPDEITMNMIILAYCKQGKAERAVQMLDLVSCGR-------RKWRPD 598

Query: 455 KFTFNRVLNGL 465
             ++  V+ GL
Sbjct: 599 VISYTNVIWGL 609



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 155/331 (46%), Gaps = 13/331 (3%)

Query: 96  HPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKAD 155
           HP   H+ SS      +     D   +W     ++   L P    +  + + + S G  D
Sbjct: 312 HPN-IHTLSSLVKGCFVRGTTFDALDMWN--QMIRGFGLQPNVVAYNTLVQGFCSHGNID 368

Query: 156 RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIA 214
           +AV +FL M E GC  ++ ++ ++++   K   +E A  ++ K+       +V+ Y  + 
Sbjct: 369 KAVSVFLHMEEIGCSPNIRTYGSLINGFTKRGSLEGAVYIWNKMLTSGCCPNVVVYTSMV 428

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR-KC 273
              C   +  +A  +++ M      P++ T+N  +KG   AG+++ A + F +M+++ +C
Sbjct: 429 EALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQYRC 488

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
             ++VTY  ++ G      I+ A  +   +   GV  S +TYN ++   C       A+ 
Sbjct: 489 PPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSTSTYNTLLHGSCNAGLPGIALQ 548

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV-----GRMKDDECEPNVQTYNIL 388
           +  +M+  G  P+  T N++I   C  G+ ERA++ +     GR K     P+V +Y  +
Sbjct: 549 LVGKMMVNGKSPDEITMNMIILAYCKQGKAERAVQMLDLVSCGRRK---WRPDVISYTNV 605

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419
           I   C +   E G+ LFE+M S   +P L +
Sbjct: 606 IWGLCRSNCREDGVILFERMISERIIPILRS 636



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 135/295 (45%), Gaps = 10/295 (3%)

Query: 177 NTILDLLCKEKKVEKAYNLFKVFRGK--FKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           + +L  L +E  V  A + FK       FK   +++ V+     +  + +    +L++M 
Sbjct: 43  SAVLKRLRQESCVPLALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMK 102

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
            +G + +   +  V+  Y + G  E A   F  +K+  C+  V  Y  ++        I+
Sbjct: 103 LQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQ 162

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
               V+  M   G  P+V TYN +++ LCK + V+ A  +  EM  KG  PN+ +Y  VI
Sbjct: 163 MIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPNAVSYTTVI 222

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
             +C  G ++      GR   +  EP V  YN LI   C   + + G+EL  +M      
Sbjct: 223 SSMCEVGMVKE-----GRQLAERFEPVVSVYNALINGLCKERDYKGGVELMSEMVEKGIS 277

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
           PN+ +Y+ LI+ +     S  + +A  LL +M+ RG  P   T + ++ G  + G
Sbjct: 278 PNVISYSTLINEL---SNSGQIELAFSLLAQMLKRGCHPNIHTLSSLVKGCFVRG 329



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 146/348 (41%), Gaps = 72/348 (20%)

Query: 63  PSLHWTPQLVDQIIKR--------LWNHALKALHFF-NILSYHPTYAH--SPSSFDHAID 111
           P++H    LV     R        +WN  ++      N+++Y+       S  + D A+ 
Sbjct: 313 PNIHTLSSLVKGCFVRGTTFDALDMWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIDKAVS 372

Query: 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ 171
           +             +H M+ +   P  +T+  +   +   G  + AV I+  M   GC  
Sbjct: 373 V------------FLH-MEEIGCSPNIRTYGSLINGFTKRGSLEGAVYIWNKMLTSGCCP 419

Query: 172 SLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVL 230
           ++  + ++++ LC+  K ++A +L ++   +  A  V ++N    G C   R + A +V 
Sbjct: 420 NVVVYTSMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVF 479

Query: 231 KEMVDR-GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG--- 286
           ++M  +    PN+ TYN +L G  +A +IEEA+    E+  R  E    TY T++HG   
Sbjct: 480 RQMEQQYRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSTSTYNTLLHGSCN 539

Query: 287 --------------------------------FGVVGEIKRARNVFDGMVNGG---VLPS 311
                                           +   G+ +RA  + D +V+ G     P 
Sbjct: 540 AGLPGIALQLVGKMMVNGKSPDEITMNMIILAYCKQGKAERAVQMLD-LVSCGRRKWRPD 598

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
           V +Y  +I  LC+ +  E+ +++FE M+ +  +P       ++R +C 
Sbjct: 599 VISYTNVIWGLCRSNCREDGVILFERMISERIIP-------ILRSVCQ 639


>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 754

 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 105/354 (29%), Positives = 172/354 (48%), Gaps = 12/354 (3%)

Query: 116 LRDYRTVWTLVHRM--KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
           L +  T   L+  M  + L L P   T  I        G+   AV++   M  HG     
Sbjct: 298 LSELETAIKLLSEMAARGLELNPVAYTSVIAL--LCDEGQVSDAVRVVEDMVMHGVVLDA 355

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKE 232
             F T++   C++  +  A N F   + +   AD ++Y  + NG C      +A  VL+E
Sbjct: 356 AVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQE 415

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M D+GL+ +  TY +++ GY + G++ EA+    +M +++   +VVTYT +  G    G+
Sbjct: 416 MEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGD 475

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           +  A  +   M + G+  ++ TYN++I  LCK  ++E A+    +M   G  P+  TY  
Sbjct: 476 VCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTT 535

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           +I  LC + E++RA   +  M D   +P + TYN+L+  FC +G +E G  L E M    
Sbjct: 536 IIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKN 595

Query: 413 CLPNLDTYNILISSMFVRK--KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
             PN  TYN L+    + K  KS   +  G L  E+V     P + T+N ++ G
Sbjct: 596 IHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVV-----PNENTYNILIKG 644



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 105/359 (29%), Positives = 161/359 (44%), Gaps = 44/359 (12%)

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIA 214
           D AV++F  + E    ++  S+N +L  LC   +++ A+ LF         DV++Y ++ 
Sbjct: 239 DEAVQLFQELPE----KNTCSYNILLKALCTAGRIKDAHQLFDEMASP--PDVVTYGIMV 292

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN---------------------------- 246
           +G+C +     A+++L EM  RGL  N   Y                             
Sbjct: 293 HGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVV 352

Query: 247 -------IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
                   V+ G+ R G +  A  +F EM+KR    D VTYT +++G    GE+K A  V
Sbjct: 353 LDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERV 412

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
              M + G+     TY  +I   CK   +  A LV  +MV K   PN  TY  +  GLC 
Sbjct: 413 LQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCK 472

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419
            G++  A E +  M     E N+ TYN LI   C AG +E+ +     M      P++ T
Sbjct: 473 QGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYT 532

Query: 420 YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           Y  +I ++   K+ D    A  LL EM+D+G  P   T+N ++NG  + G     K +L
Sbjct: 533 YTTIIGALCQSKELDR---AHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLL 588



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 148/314 (47%), Gaps = 13/314 (4%)

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG 216
           +  + L + ++G   S  S N +L  L     +++A  LF+    K   +  SYN++   
Sbjct: 210 SAPLLLRLRQYGISPSPESCNAVLCRL----PLDEAVQLFQELPEK---NTCSYNILLKA 262

Query: 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID 276
            C   R   A ++  EM      P++ TY I++ GY    ++E A +   EM  R  E++
Sbjct: 263 LCTAGRIKDAHQLFDEMAS---PPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELN 319

Query: 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE 336
            V YT+++      G++  A  V + MV  GV+   A +  ++   C+K  +  A   F+
Sbjct: 320 PVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFD 379

Query: 337 EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
           EM  +G   +  TY  +I GLC  GE++ A   +  M+D   + +  TY +LI  +C  G
Sbjct: 380 EMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVG 439

Query: 397 EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
           ++     +  KM      PN+ TY  L   +    K  D+  A +LL EM  +G     F
Sbjct: 440 KMTEAFLVHNKMVQKRVTPNVVTYTALSDGLC---KQGDVCAANELLHEMCSKGLELNIF 496

Query: 457 TFNRVLNGLLLIGN 470
           T+N ++NGL   GN
Sbjct: 497 TYNSLINGLCKAGN 510



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 150/355 (42%), Gaps = 36/355 (10%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M+   L     T+  +      AG+   A ++   M + G      ++  ++D  CK  K
Sbjct: 381 MQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGK 440

Query: 189 VEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           + +A+ +  K+ + +   +V++Y  +++G C       A E+L EM  +GL  N+ TYN 
Sbjct: 441 MTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNS 500

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ G  +AG +E+A R  ++M +   + DV TYTTI+       E+ RA ++   M++ G
Sbjct: 501 LINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKG 560

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY----------------- 350
           + P++ TYN ++   C    VE    + E M+ K   PN+TTY                 
Sbjct: 561 IKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTT 620

Query: 351 ------------------NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
                             N++I+G C    M+ AL F   M +        +YN LIR  
Sbjct: 621 EIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLL 680

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
               +      LFEKM         D YN  I   F     +  L     L+E+ 
Sbjct: 681 NKKKKFTEARRLFEKMRKERLTAEPDVYNFYIDLSFNEDNLESTLALCDELVEVT 735



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 6/169 (3%)

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           +  +YN +++ LC    +++A  +F+EM      P+  TY +++ G C   E+E A++ +
Sbjct: 252 NTCSYNILLKALCTAGRIKDAHQLFDEMASP---PDVVTYGIMVHGYCTLSELETAIKLL 308

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
             M     E N   Y  +I   CD G++   + + E M     + +   +  ++S  F R
Sbjct: 309 SEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSG-FCR 367

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           K   DL  A     EM  RG      T+  ++NGL   G    A+ +L+
Sbjct: 368 K--GDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQ 414


>gi|357159762|ref|XP_003578551.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Brachypodium distachyon]
          Length = 534

 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 123/464 (26%), Positives = 217/464 (46%), Gaps = 16/464 (3%)

Query: 32  PLPPAAA-DPAALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIK-RLWNHALKALHF 89
           PLP +   DP    S  LT   P T       PS H T  +  +++  R      +AL F
Sbjct: 68  PLPASPPFDPLPSLSTTLTGLLPST-------PSPHLTFHVFGRLLALRRGIPFPEALAF 120

Query: 90  FN-ILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERY 148
           FN +L   PT +  P  +   +DL A+   +     L+  M+  S+  + +    +  RY
Sbjct: 121 FNHVLPSLPTDS-LPELYASMMDLLAKHHHFPLARHLLDEMRKRSIPISSQVILALIRRY 179

Query: 149 VSAGKADRAVKIFLSMHEHGCRQSLNS-FNTILDLLCKEKKVEKAYNLFKVFRGKFKADV 207
           V AG +  A  +F SM E+G      +   ++L  L K++   +A  LF  ++  F  DV
Sbjct: 180 VRAGMSSEASDLFRSMEEYGGGVPDPAVLASLLGALSKKRLASEAQALFDSYKSVFTPDV 239

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           + Y  + + WC     +KA +V  EM   G+ PN+ TY  V+   +RAGQ+  A     +
Sbjct: 240 VLYTTLVHAWCRSGCLDKAEQVFAEMQQAGIMPNVYTYTAVIDAMYRAGQVPRAQELLCQ 299

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK-- 325
           M    C  +  T+  I+      G  ++   V + M   G  P + TYN +++  C K  
Sbjct: 300 MIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCDPDIITYNFLMETHCGKGQ 359

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
            +++ A+ +  +M+ KG  P+  T+N +++ +   G ++ A +   RM++ +C+PNV TY
Sbjct: 360 SNLDAAMKLLLKMIAKGCTPDCHTFNPMLKLVVVLGNVDAAHKLYERMQELQCKPNVITY 419

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           N+L++ F     ++  L + + M +    PN++TY  LI +   R          + ++E
Sbjct: 420 NLLMKLFGKDKSMDMVLRIKKDMDAQGVEPNVNTYGALIETFCGRGNWKRAYATLREMLE 479

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPR 489
           +  +   P+K  ++ VL  L   G     +E++ L +  G + R
Sbjct: 480 V--KSLKPKKPVYDMVLVLLRKAGQLRKHEELVELMADRGFIKR 521


>gi|302780869|ref|XP_002972209.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
 gi|300160508|gb|EFJ27126.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
          Length = 363

 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 147/298 (49%), Gaps = 2/298 (0%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M    + P   T+  +   +      D  + +   M   GC   +N++NT++D LCK  +
Sbjct: 1   MTIWGIEPNMVTYNSLIHGFCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGR 60

Query: 189 VEKAYNLFKVFRGKF-KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           V +   LF   + KF   DVI+Y+ +  G+C + R N A  +  +M+ +   P++ T+  
Sbjct: 61  VPEVNRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPT 120

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           +++GY  AG +++A R   E+    C  DV TYT++V GF  V  +  A  V   M  G 
Sbjct: 121 LVEGYCNAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKGE 180

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
             P+V  Y A+I   C       A  + EEMVG G  PN+ TY  +I G C TG++E A 
Sbjct: 181 CQPNVVIYTALIDAFCSAGKPTVAYKLLEEMVGNGVQPNAITYRSLIGGFCGTGDLEEAH 240

Query: 368 EFVGRMKDDE-CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
           + + R++ +E C+ ++  Y +++   C  G +   LEL E +      P  D Y  LI
Sbjct: 241 KMLERLERNENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALI 298



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 92/291 (31%), Positives = 148/291 (50%), Gaps = 8/291 (2%)

Query: 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262
            + ++++YN + +G+C+    +  L +++EM   G  P++ TYN ++ G  + G++ E  
Sbjct: 6   IEPNMVTYNSLIHGFCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGRVPEVN 65

Query: 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322
           R F EMK + C  DV+TY+ ++ GF  +  I  A  +FD M+    LP V T+  +++  
Sbjct: 66  RLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLVEGY 125

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
           C    V++A  + EE+V     P+  TY  ++ G C    M  A   + RM   EC+PNV
Sbjct: 126 CNAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKGECQPNV 185

Query: 383 QTYNILIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
             Y  LI  FC AG+     +L E+M G+GV  PN  TY  LI        + DL  A K
Sbjct: 186 VIYTALIDAFCSAGKPTVAYKLLEEMVGNGV-QPNAITYRSLIGGFC---GTGDLEEAHK 241

Query: 442 LLIEMVDRGFMPRK--FTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
           +L E ++R    +   F +  +++GL   G    A E+L    + G  PR 
Sbjct: 242 ML-ERLERNENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRH 291



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 113/247 (45%), Gaps = 3/247 (1%)

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           G+ PN+ TYN ++ G+     ++       EM    C  D+ TY T++ G    G +   
Sbjct: 5   GIEPNMVTYNSLIHGFCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGRVPEV 64

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
             +F  M      P V TY+ +I   CK D +  A  +F++M+ +  +P+  T+  ++ G
Sbjct: 65  NRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLVEG 124

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
            C+ G ++ A   +  +   +C P+V TY  L+  FC    +     + ++M  G C PN
Sbjct: 125 YCNAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKGECQPN 184

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKE 476
           +  Y  LI +     K     VA KLL EMV  G  P   T+  ++ G    G+   A +
Sbjct: 185 VVIYTALIDAFCSAGKP---TVAYKLLEEMVGNGVQPNAITYRSLIGGFCGTGDLEEAHK 241

Query: 477 ILRLQSR 483
           +L    R
Sbjct: 242 MLERLER 248



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 114/245 (46%), Gaps = 16/245 (6%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           TL   M   +  P   TF  + E Y +AG  D A ++   +    C   + ++ +++D  
Sbjct: 101 TLFDDMLKQAALPDVVTFPTLVEGYCNAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGF 160

Query: 184 CKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CK K++ +A+ + K + +G+ + +V+ Y  + + +C   +   A ++L+EMV  G+ PN 
Sbjct: 161 CKVKRMVEAHRVLKRMAKGECQPNVVIYTALIDAFCSAGKPTVAYKLLEEMVGNGVQPNA 220

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRK-CEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
            TY  ++ G+   G +EEA +    +++ + C+ D+  Y  ++ G    G +  A  + +
Sbjct: 221 ITYRSLIGGFCGTGDLEEAHKMLERLERNENCKADMFAYRVMMDGLCRTGRMSAALELLE 280

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            +   G  P    Y A+I+               E  + +   PN+  Y  VI+ L   G
Sbjct: 281 AIKQSGTPPRHDIYVALIR--------------GEMTLSRKGRPNAKVYEAVIQELAREG 326

Query: 362 EMERA 366
             E+A
Sbjct: 327 RHEKA 331


>gi|356518400|ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Glycine max]
          Length = 546

 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 107/382 (28%), Positives = 198/382 (51%), Gaps = 8/382 (2%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           AL+ FN++S    + H+ +++   +D  AR  ++  V  ++H+M   +    +  F  + 
Sbjct: 109 ALNIFNMVSEQNGFQHNNATYATILDKLARCNNFHAVDRVLHQMTYETCKFHEGIFVNLM 168

Query: 146 ERYVSAGKADRAVKIFLSMHE-HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF- 203
           + +  +   ++ +  + S+      + S  + +T L+LL    +V+ A  L    +    
Sbjct: 169 KHFSKSSLHEKLLHAYFSIQPIVREKPSPKALSTCLNLLLDSNRVDLARKLLLHAKRDLT 228

Query: 204 -KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN-PNLTTYNIVLKGYFRAGQIEEA 261
            K +V  +N++    C     + A E+++EM +   + PNL TY+ ++ G  R G+++EA
Sbjct: 229 RKPNVCVFNILVKYHCKNGDLDSAFEIVEEMRNSEFSYPNLVTYSTLMDGLCRNGRVKEA 288

Query: 262 WRFFLEMKKRKCEI-DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
           +  F EM  R   + D +TY  +++GF   G+  RARNV   M + G  P+V  Y+A++ 
Sbjct: 289 FDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYNYSALVD 348

Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
            LCK   +E+A  V  E+ G G  P++ TY  +I  LC  G+ + A+E +  MK++ C+ 
Sbjct: 349 GLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEEMKENGCQA 408

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAG 440
           +  T+N+L+   C  G+ E  L++ EK+       N  +Y I+++S+    +  +L  A 
Sbjct: 409 DSVTFNVLLGGLCREGKFEEALDMVEKLPQQGVYLNKGSYRIVLNSL---TQKCELKRAK 465

Query: 441 KLLIEMVDRGFMPRKFTFNRVL 462
           +LL  M+ RGF P   T N +L
Sbjct: 466 ELLGLMLRRGFQPHYATSNELL 487



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 157/337 (46%), Gaps = 46/337 (13%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM-HEHG 168
           +DLA +L        L+H  + L+  P    F I+ + +   G  D A +I   M +   
Sbjct: 213 VDLARKL--------LLHAKRDLTRKPNVCVFNILVKYHCKNGDLDSAFEIVEEMRNSEF 264

Query: 169 CRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKA 226
              +L +++T++D LC+  +V++A++LF+  V R     D ++YNV+ NG+C   + ++A
Sbjct: 265 SYPNLVTYSTLMDGLCRNGRVKEAFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRA 324

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
             V++ M   G  PN+  Y+ ++ G  + G++E+A     E+K    + D VTYT++++ 
Sbjct: 325 RNVIQFMKSNGCYPNVYNYSALVDGLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINF 384

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
               G+   A  + + M   G      T+N ++  LC++   E A+ + E++  +G   N
Sbjct: 385 LCRNGKSDEAIELLEEMKENGCQADSVTFNVLLGGLCREGKFEEALDMVEKLPQQGVYLN 444

Query: 347 STTYNVVIRGLCHTGEMERALEFVG------------------------RMKDDEC---- 378
             +Y +V+  L    E++RA E +G                         M DD      
Sbjct: 445 KGSYRIVLNSLTQKCELKRAKELLGLMLRRGFQPHYATSNELLVCLCKAGMVDDAAVALF 504

Query: 379 -------EPNVQTYNILIRYFCDAGEIERGLELFEKM 408
                  +P ++T+ +LI   C   ++    EL +++
Sbjct: 505 DLVEMGFQPGLETWEVLIGLICRERKLLYVFELLDEL 541



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 5/115 (4%)

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISSMFVRKKSDDLL 437
           +PNV  +NIL++Y C  G+++   E+ E+M  S    PNL TY+ L+  +    +  +  
Sbjct: 230 KPNVCVFNILVKYHCKNGDLDSAFEIVEEMRNSEFSYPNLVTYSTLMDGLCRNGRVKE-- 287

Query: 438 VAGKLLIEMVDRG-FMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
            A  L  EMV R   +P   T+N ++NG    G    A+ +++     G  P  +
Sbjct: 288 -AFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVY 341


>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 498

 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 197/397 (49%), Gaps = 51/397 (12%)

Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
             +P SF    ++  +  D   V TL   +K L L   + ++  +       G+A  A++
Sbjct: 109 GQNPLSFSVFANILKKGYD-PNVITLTTLIKGLCL---KVSYGTLINGLCKVGQARAALQ 164

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWC 218
           +   +     + ++  +NTI+D +CK K V +A++L+ ++       DV++Y+ + +G+ 
Sbjct: 165 LLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALISGFF 224

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
           +V +   A+++  +M+   + P++ T+NI++ G+ + G+++E    F  M K+  + +VV
Sbjct: 225 IVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVV 284

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TY +++ G+ +V ++ +A ++F+ M  GGV P   +YN MI   CK   V+ A+ +F++M
Sbjct: 285 TYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKM 344

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN------------ 386
             K  +PN  TY  +I GLC +G++  AL+ V  M D    P++ TY+            
Sbjct: 345 HCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQV 404

Query: 387 -------------------------------ILIRYFCDAGEIERGLELFEKMGSGVCLP 415
                                          ++I+ FC  G     L L  KM     +P
Sbjct: 405 DKAIALLTKLKDQVFEDLFVKGYNLDVYAYTVMIQGFCVKGLFNEALALLSKMEDNGRIP 464

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
           +  TY I+I S+F + ++D   +A KLL EM+ RG +
Sbjct: 465 DAKTYEIIILSLFKKDEND---MAEKLLREMIARGLL 498



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 192/397 (48%), Gaps = 25/397 (6%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            ++  Y T  +L  +M+   +     T  I+   +   G+   +  +F ++ + G   ++
Sbjct: 71  VKINCYHTAISLHRQMELKGIASNLVTLNILINCFSQLGQNPLSFSVFANILKKGYDPNV 130

Query: 174 -------------NSFNTILDLLCKEKKVEKAYNLFKVFRGKF-KADVISYNVIANGWCL 219
                         S+ T+++ LCK  +   A  L +   GK  + +V+ YN I +  C 
Sbjct: 131 ITLTTLIKGLCLKVSYGTLINGLCKVGQARAALQLLRRVDGKLVQPNVVMYNTIIDSMCK 190

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
           VK  N+A ++  EMV  G++P++ TY+ ++ G+F  G++++A   F +M     + DV T
Sbjct: 191 VKLVNEAFDLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYT 250

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           +  +V GF   G++K  + VF  M+  G+ P+V TY +++   C    V  A  +F  M 
Sbjct: 251 FNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMA 310

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             G  P++ +YN++I G C   +++ A+    +M      PNV TY  LI   C +G+I 
Sbjct: 311 QGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKIS 370

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL-----VAGKLLIEMVDRGFMPR 454
             L+L ++M      P++ TY+ ++ ++    + D  +     +  ++  ++  +G+   
Sbjct: 371 YALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGYNLD 430

Query: 455 KFTFNRVLNGLLLIGNQGLAKEILRLQSRC---GRLP 488
            + +  ++ G  +   +GL  E L L S+    GR+P
Sbjct: 431 VYAYTVMIQGFCV---KGLFNEALALLSKMEDNGRIP 464


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 172/364 (47%), Gaps = 5/364 (1%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           S  S+   I+     +D      L+ +M    L P    ++ +   Y S G+ + A ++ 
Sbjct: 149 SAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLL 208

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLV 220
             M   G    +  +N I+  L K  K+E+A       +G+  K D +++     G+   
Sbjct: 209 DGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKT 268

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
            +  +A +   EM+D GL PN   Y +++ G+F+AG + EA   F  +       DV T 
Sbjct: 269 GKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTC 328

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
           +  +HG    G ++ A  VF  +   G++P V TY+++I   CK+  VE A  + +EM  
Sbjct: 329 SAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCL 388

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           KG  PN   YN ++ GLC +G+++RA +    M +   EP+  TY+ +I  +C +  +  
Sbjct: 389 KGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAE 448

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
              LF +M S    P+   YN L+       K  D+  A  L  EM+ +GF     +FN 
Sbjct: 449 AFSLFHEMPSKGVQPHSFVYNALVHGCC---KEGDMEKAMNLFREMLQKGF-ATTLSFNT 504

Query: 461 VLNG 464
           +++G
Sbjct: 505 LIDG 508



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 171/366 (46%), Gaps = 6/366 (1%)

Query: 103 PSSFDHAIDLAARLRDYR--TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P+++ + I  A   R  R          M+   L P     + + + ++  G  D  ++I
Sbjct: 8   PNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRI 67

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCL 219
              M   G   +L ++N ++  LCK  K+EKA  + K +     K +  ++ ++  G+C 
Sbjct: 68  KDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCR 127

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
                +ALE+L EM  R L P+  +Y  ++ G      +  A +   +M     + +VV 
Sbjct: 128 EHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVV 187

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y+T++ G+   G I+ AR + DGM   GV P +  YNA+I  L K   +E A     E+ 
Sbjct: 188 YSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQ 247

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
           G+G  P++ T+   I G   TG+M  A ++   M D    PN   Y +LI     AG + 
Sbjct: 248 GRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLM 307

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
             L +F  + +   LP++ T +  I  +    +  + L   K+  E+ ++G +P  FT++
Sbjct: 308 EALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEAL---KVFSELKEKGLVPDVFTYS 364

Query: 460 RVLNGL 465
            +++G 
Sbjct: 365 SLISGF 370



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 166/371 (44%), Gaps = 51/371 (13%)

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
            L P    + ++   +  AG    A+ IF  +H  G    + + +  +  L K  +V++A
Sbjct: 285 GLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEA 344

Query: 193 YNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
             +F   + K    DV +Y+ + +G+C      KA E+  EM  +G+ PN+  YN ++ G
Sbjct: 345 LKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDG 404

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
             ++G I+ A + F  M ++  E D VTY+T++ G+     +  A ++F  M + GV P 
Sbjct: 405 LCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPH 464

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
              YNA++   CK+  +E A+ +F EM+ KG+   + ++N +I G C + +++ A +   
Sbjct: 465 SFVYNALVHGCCKEGDMEKAMNLFREMLQKGF-ATTLSFNTLIDGYCKSCKIQEASQLFQ 523

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERG-----------------LELFEKMGSGVCL 414
            M   +  P+  TY  +I + C AG++E                     LFEKM +    
Sbjct: 524 EMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVK 583

Query: 415 PNLDTYNILI---------------------SSMFVRK-----------KSDDLLVAGKL 442
           P+  TY ++I                       M  +            K +DL  A KL
Sbjct: 584 PDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKL 643

Query: 443 LIEMVDRGFMP 453
           L EM + G  P
Sbjct: 644 LDEMGELGLKP 654



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 158/330 (47%), Gaps = 18/330 (5%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           ++  +D   +  D +    L   M    L P   T++ + + Y  +     A  +F  M 
Sbjct: 398 YNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMP 457

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNK 225
             G +     +N ++   CKE  +EKA NLF+    K  A  +S+N + +G+C   +  +
Sbjct: 458 SKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQE 517

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
           A ++ +EM+ + + P+  TY  V+  + +AG++EEA   F EM++R   +D V       
Sbjct: 518 ASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVF------ 571

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
                        +F+ MV  GV P   TY  +I   CK+D++  A  + +E+VGKG + 
Sbjct: 572 ------------ALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLT 619

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
             T ++++I  LC   ++  A + +  M +   +P++   + L+R F +AG+++    +F
Sbjct: 620 KGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVF 679

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
           E + S   +P+  T   L++       S+D
Sbjct: 680 EGVKSLGLVPDTTTLIDLVNGNLNDTDSED 709



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 140/312 (44%), Gaps = 32/312 (10%)

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           +Y +I  G C  KR N+A    +EM   GL P+    + ++ G+ R G I+E  R    M
Sbjct: 12  TYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVM 71

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
                 I+++TY  ++HG    G++++A  +  GM+  G  P+  T+  +I+  C++ ++
Sbjct: 72  VSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNM 131

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
             A+ + +EM  +  +P++ +Y  +I GLCH  ++  A + + +M     +PNV  Y+ L
Sbjct: 132 GRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTL 191

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM--------------------- 427
           I  +   G IE    L + M      P++  YN +IS +                     
Sbjct: 192 IMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGL 251

Query: 428 ---------FV--RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKE 476
                    F+    K+  +  A K   EM+D G MP    +  ++NG    GN   A  
Sbjct: 252 KPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALS 311

Query: 477 ILRLQSRCGRLP 488
           I R     G LP
Sbjct: 312 IFRHLHALGVLP 323



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 121/252 (48%), Gaps = 4/252 (1%)

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M ++GL PN  TY I+  G  RA ++ EA   F EM+K   + D    + ++ GF   G+
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           I     + D MV+ G+  ++ TYN +I  LCK   +E A  + + M+  G  PNS T+ +
Sbjct: 61  IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCL 120

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           +I G C    M RALE +  M+     P+  +Y  +I   C   ++    +L EKM    
Sbjct: 121 LIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSG 180

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
             PN+  Y+ LI       + ++   A +LL  M   G  P  F +N +++ L   G   
Sbjct: 181 LKPNVVVYSTLIMGYASEGRIEE---ARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKME 237

Query: 473 LAKE-ILRLQSR 483
            A   +L +Q R
Sbjct: 238 EASTYLLEIQGR 249



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 119/307 (38%), Gaps = 61/307 (19%)

Query: 63  PSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHA--IDLAARLRDYR 120
           P++     LVD + K       +A   F+ +   P     P S  ++  ID   +  +  
Sbjct: 393 PNIFIYNALVDGLCKS--GDIQRARKLFDGM---PEKGLEPDSVTYSTMIDGYCKSENVA 447

Query: 121 TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180
             ++L H M S  + P    +  +       G  ++A+ +F  M + G   +L SFNT++
Sbjct: 448 EAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTL-SFNTLI 506

Query: 181 DLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDR--- 236
           D  CK  K+++A  LF+    K    D ++Y  + +  C   +  +A  + KEM +R   
Sbjct: 507 DGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLI 566

Query: 237 --------------GLNPNLTTYNIVL---------------------KGYFRAGQIE-- 259
                         G+ P+  TY +V+                     KG    G I   
Sbjct: 567 VDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDL 626

Query: 260 ------------EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
                       EA +   EM +   +  +   +T+V  F   G++  A  VF+G+ + G
Sbjct: 627 LITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLG 686

Query: 308 VLPSVAT 314
           ++P   T
Sbjct: 687 LVPDTTT 693


>gi|224125420|ref|XP_002329801.1| predicted protein [Populus trichocarpa]
 gi|222870863|gb|EEF07994.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 115/413 (27%), Positives = 202/413 (48%), Gaps = 9/413 (2%)

Query: 58  QTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILS--YHPTYAHSPSSFDHAIDLAAR 115
           +TL   S   TP  V+Q++ R      KA   F+  S  Y   + H  ++F   I     
Sbjct: 4   KTLLKWSKQITPSKVEQLL-RAERDLRKAKIIFDSASAEYSNGFRHDHTTFGVMISKLVS 62

Query: 116 LRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS 175
             ++R    +++RMK      T++ F  I   Y        A+++F  M++ GC+ +  S
Sbjct: 63  ANEFRPAEEMLNRMKEEKCRITEEIFLSICRGYGRVHMPLDAIRVFHKMNDFGCKPTDKS 122

Query: 176 FNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRT-NKALEVLKEM 233
           + ++  +L +E +++ A + +K  R    +  V+S NV+    C    T + A E+ +EM
Sbjct: 123 YISVFAILVEENQLKVAMSFYKYMREMGVRQSVVSLNVLIKALCKNSGTIDAAFEIFREM 182

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
             RG +P+  TY  ++ G  + G+  EA   F EM  + C   VVTY+ ++HG    G +
Sbjct: 183 PKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKGCSPSVVTYSCLMHGLCQAGNV 242

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
             A  +FD M    + P+V TY++++  LCK      A+ + E MV K + PN  TY+ +
Sbjct: 243 DEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHKPNMVTYSTL 302

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           I GLC  G++  A+E + RMK    +P+   Y  +I  FC+  + +      ++M  G  
Sbjct: 303 INGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFCNIRKFQEAATYLDEMVLGQI 362

Query: 414 LPNLDTYN--ILISSMFVRK--KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
            PN  T++  + +++M V+    + +L  + +L I M  RG      TF+ ++
Sbjct: 363 SPNRVTWSLHVKLNNMVVQGLCTNGNLNRSFQLYIGMRTRGISIDAGTFDSLV 415



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 163/351 (46%), Gaps = 46/351 (13%)

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186
           H+M      PT K++  +    V   +   A+  +  M E G RQS+ S N ++  LCK 
Sbjct: 109 HKMNDFGCKPTDKSYISVFAILVEENQLKVAMSFYKYMREMGVRQSVVSLNVLIKALCKN 168

Query: 187 K-KVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
              ++ A+ +F+    RG    D  +Y  + NG C + +T +A E+ KEM  +G +P++ 
Sbjct: 169 SGTIDAAFEIFREMPKRG-CDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKGCSPSVV 227

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY+ ++ G  +AG ++EA   F +MKK+  E +V TY++++ G    G    A  + + M
Sbjct: 228 TYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMM 287

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY------------- 350
           V     P++ TY+ +I  LCK+  +  A+   + M  +G  P++  Y             
Sbjct: 288 VRKRHKPNMVTYSTLINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFCNIRKF 347

Query: 351 -----------------------------NVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
                                        N+V++GLC  G + R+ +    M+      +
Sbjct: 348 QEAATYLDEMVLGQISPNRVTWSLHVKLNNMVVQGLCTNGNLNRSFQLYIGMRTRGISID 407

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
             T++ L++ FC  G++ +   +F++M    C+P+   ++ ++   + R+K
Sbjct: 408 AGTFDSLVKCFCKKGDLHKAARIFDEMVLDGCVPDHGIWSAVVGGFWDRRK 458



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 140/306 (45%), Gaps = 10/306 (3%)

Query: 75  IIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHA--IDLAARLRDYRTVWTLVHRMKSL 132
           +IK L  ++      F I    P     P S+ +   I+   +L        L   M + 
Sbjct: 161 LIKALCKNSGTIDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTK 220

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
              P+  T++ +      AG  D A+ +F  M +     ++ ++++++D LCK     +A
Sbjct: 221 GCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEA 280

Query: 193 YNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
             L ++  R + K ++++Y+ + NG C   +  +A+E L  M  +GL P+   Y  ++ G
Sbjct: 281 MELLEMMVRKRHKPNMVTYSTLINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIING 340

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYT-------TIVHGFGVVGEIKRARNVFDGMV 304
           +    + +EA  +  EM   +   + VT++        +V G    G + R+  ++ GM 
Sbjct: 341 FCNIRKFQEAATYLDEMVLGQISPNRVTWSLHVKLNNMVVQGLCTNGNLNRSFQLYIGMR 400

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
             G+     T++++++  CKK  +  A  +F+EMV  G +P+   ++ V+ G     ++ 
Sbjct: 401 TRGISIDAGTFDSLVKCFCKKGDLHKAARIFDEMVLDGCVPDHGIWSAVVGGFWDRRKVR 460

Query: 365 RALEFV 370
            A E +
Sbjct: 461 EAFESI 466



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 118/248 (47%), Gaps = 4/248 (1%)

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           G   + TT+ +++     A +   A      MK+ KC I    + +I  G+G V     A
Sbjct: 45  GFRHDHTTFGVMISKLVSANEFRPAEEMLNRMKEEKCRITEEIFLSICRGYGRVHMPLDA 104

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
             VF  M + G  P+  +Y ++  +L +++ ++ A+  ++ M   G   +  + NV+I+ 
Sbjct: 105 IRVFHKMNDFGCKPTDKSYISVFAILVEENQLKVAMSFYKYMREMGVRQSVVSLNVLIKA 164

Query: 357 LC-HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
           LC ++G ++ A E    M    C+P+  TY  LI   C  G+     ELF++M +  C P
Sbjct: 165 LCKNSGTIDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKGCSP 224

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
           ++ TY+ L+  +      D+   A  L  +M  +   P  FT++ +++GL   G    A 
Sbjct: 225 SVVTYSCLMHGLCQAGNVDE---AMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAM 281

Query: 476 EILRLQSR 483
           E+L +  R
Sbjct: 282 ELLEMMVR 289


>gi|356536611|ref|XP_003536830.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 578

 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 112/382 (29%), Positives = 189/382 (49%), Gaps = 60/382 (15%)

Query: 152 GKADRAVKIFLSMHEHG-CRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVI 208
           GK   AV++   M E    + +L  +NT++  LCK+  + +A  L    + +G F  D+ 
Sbjct: 175 GKPRAAVQLLQKMEERQLVKPNLIMYNTVVHGLCKDGNINEARVLCSKMIVQGIF-PDIF 233

Query: 209 SYNVIA----------------NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
           +Y+ +                 NG+CL  + ++A E+   M++RG   ++  YNI++ GY
Sbjct: 234 TYSSLIYGLCRAGQRKEVTSLLNGFCLNNKVDEARELFNVMIERGEQHDIINYNILMNGY 293

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
               ++ EA + F  M +R  + D +TYT ++HG+ ++ ++  ARN+F GM+  G++P V
Sbjct: 294 CLNNKVGEARKLFHMMVERGEQPDTITYTILMHGYCLIDKVDEARNLFHGMIERGLVPDV 353

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            +YN +I+  CK + V  A+ + E+M  K  +PN  TYN V+ GLC +G +  A + V  
Sbjct: 354 WSYNILIKGYCKFERVGEAMNLLEDMFLKNLVPNIITYNSVVDGLCKSGGILDAWKLVDE 413

Query: 373 MK--------------------DDEC-----------------EPNVQTYNILIRYFCDA 395
           M                       EC                  PNV +YNILI   C  
Sbjct: 414 MHYCCQPPPDVTTYNILLESLCRIECVEKAIAFFKHLIFERSFAPNVWSYNILISGCCKN 473

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
             ++  + LF  M     +P++ TYNIL+ ++F  ++ D    A  LL+++VD+G  P  
Sbjct: 474 RRLDEAINLFNHMCFKNLVPDIVTYNILLDALFNGQQLDK---AIALLVQIVDQGISPNL 530

Query: 456 FTFNRVLNGLLLIGNQGLAKEI 477
            T+N ++NGL   G    A++I
Sbjct: 531 RTYNILINGLHKGGRPKTAQKI 552



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 168/318 (52%), Gaps = 10/318 (3%)

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISY 210
           K D A ++F  M E G +  + ++N +++  C   KV +A  LF   V RG+ + D I+Y
Sbjct: 263 KVDEARELFNVMIERGEQHDIINYNILMNGYCLNNKVGEARKLFHMMVERGE-QPDTITY 321

Query: 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
            ++ +G+CL+ + ++A  +   M++RGL P++ +YNI++KGY +  ++ EA     +M  
Sbjct: 322 TILMHGYCLIDKVDEARNLFHGMIERGLVPDVWSYNILIKGYCKFERVGEAMNLLEDMFL 381

Query: 271 RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM-VNGGVLPSVATYNAMIQVLCKKDSVE 329
           +    +++TY ++V G    G I  A  + D M       P V TYN +++ LC+ + VE
Sbjct: 382 KNLVPNIITYNSVVDGLCKSGGILDAWKLVDEMHYCCQPPPDVTTYNILLESLCRIECVE 441

Query: 330 NAILVFEEMV-GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
            AI  F+ ++  + + PN  +YN++I G C    ++ A+     M      P++ TYNIL
Sbjct: 442 KAIAFFKHLIFERSFAPNVWSYNILISGCCKNRRLDEAINLFNHMCFKNLVPDIVTYNIL 501

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           +    +  ++++ + L  ++      PNL TYNILI+ +    K      A K+ + +  
Sbjct: 502 LDALFNGQQLDKAIALLVQIVDQGISPNLRTYNILINGL---HKGGRPKTAQKISLYLSI 558

Query: 449 RGFMP--RKFTFNRVLNG 464
           RG+ P  + +  N +  G
Sbjct: 559 RGYHPDVKTYIINELCKG 576



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/378 (26%), Positives = 176/378 (46%), Gaps = 25/378 (6%)

Query: 89  FFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERY 148
           F  ++  HP    S   F   +   A++R Y T   L   M+   + P   TF I+   +
Sbjct: 42  FHRMVDMHPL--PSIVEFTKILGTIAKMRYYATAIDLYTLMEYKGVVPFTVTFNILINCF 99

Query: 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADV 207
              G+ D A  +   + + GCR ++ +F T++   C   K+  A  ++ ++   + + D 
Sbjct: 100 CHMGQMDFAFSVMGKILKWGCRPNVVTFTTLMKGFCVNDKMLDALYIYDEMVARRIRFDD 159

Query: 208 ISYNVIANGWCLVK--RTNKALEVLKEMVDRGL-NPNLTTYNIVLKGYFRAGQIEEAWRF 264
           + Y  + NG C  K  +   A+++L++M +R L  PNL  YN V+ G  + G I EA   
Sbjct: 160 VLYGTLINGLCKSKIGKPRAAVQLLQKMEERQLVKPNLIMYNTVVHGLCKDGNINEARVL 219

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGE----------------IKRARNVFDGMVNGGV 308
             +M  +    D+ TY+++++G    G+                +  AR +F+ M+  G 
Sbjct: 220 CSKMIVQGIFPDIFTYSSLIYGLCRAGQRKEVTSLLNGFCLNNKVDEARELFNVMIERGE 279

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
              +  YN ++   C  + V  A  +F  MV +G  P++ TY +++ G C   +++ A  
Sbjct: 280 QHDIINYNILMNGYCLNNKVGEARKLFHMMVERGEQPDTITYTILMHGYCLIDKVDEARN 339

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
               M +    P+V +YNILI+ +C    +   + L E M     +PN+ TYN ++  + 
Sbjct: 340 LFHGMIERGLVPDVWSYNILIKGYCKFERVGEAMNLLEDMFLKNLVPNIITYNSVVDGLC 399

Query: 429 VRKKSDDLLVAGKLLIEM 446
              KS  +L A KL+ EM
Sbjct: 400 ---KSGGILDAWKLVDEM 414



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 135/255 (52%), Gaps = 7/255 (2%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-- 197
            + I+   Y    K   A K+F  M E G +    ++  ++   C   KV++A NLF   
Sbjct: 285 NYNILMNGYCLNNKVGEARKLFHMMVERGEQPDTITYTILMHGYCLIDKVDEARNLFHGM 344

Query: 198 VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
           + RG    DV SYN++  G+C  +R  +A+ +L++M  + L PN+ TYN V+ G  ++G 
Sbjct: 345 IERG-LVPDVWSYNILIKGYCKFERVGEAMNLLEDMFLKNLVPNIITYNSVVDGLCKSGG 403

Query: 258 IEEAWRFFLEMKKRKCEI--DVVTYTTIVHGFGVVGEIKRARNVFDGMV-NGGVLPSVAT 314
           I +AW+   EM    C+   DV TY  ++     +  +++A   F  ++      P+V +
Sbjct: 404 ILDAWKLVDEMH-YCCQPPPDVTTYNILLESLCRIECVEKAIAFFKHLIFERSFAPNVWS 462

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN +I   CK   ++ AI +F  M  K  +P+  TYN+++  L +  ++++A+  + ++ 
Sbjct: 463 YNILISGCCKNRRLDEAINLFNHMCFKNLVPDIVTYNILLDALFNGQQLDKAIALLVQIV 522

Query: 375 DDECEPNVQTYNILI 389
           D    PN++TYNILI
Sbjct: 523 DQGISPNLRTYNILI 537



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 131/275 (47%), Gaps = 5/275 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L H M      P   T+ I+   Y    K D A  +F  M E G    + S+N ++   C
Sbjct: 305 LFHMMVERGEQPDTITYTILMHGYCLIDKVDEARNLFHGMIERGLVPDVWSYNILIKGYC 364

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM-VDRGLNPNL 242
           K ++V +A NL + +F      ++I+YN + +G C       A +++ EM       P++
Sbjct: 365 KFERVGEAMNLLEDMFLKNLVPNIITYNSVVDGLCKSGGILDAWKLVDEMHYCCQPPPDV 424

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMK-KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           TTYNI+L+   R   +E+A  FF  +  +R    +V +Y  ++ G      +  A N+F+
Sbjct: 425 TTYNILLESLCRIECVEKAIAFFKHLIFERSFAPNVWSYNILISGCCKNRRLDEAINLFN 484

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M    ++P + TYN ++  L     ++ AI +  ++V +G  PN  TYN++I GL   G
Sbjct: 485 HMCFKNLVPDIVTYNILLDALFNGQQLDKAIALLVQIVDQGISPNLRTYNILINGLHKGG 544

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
             + A +    +      P+V+TY  +I   C  G
Sbjct: 545 RPKTAQKISLYLSIRGYHPDVKTY--IINELCKGG 577



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 142/325 (43%), Gaps = 23/325 (7%)

Query: 184 CKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CK   ++ A  LF ++        ++ +  I      ++    A+++   M  +G+ P  
Sbjct: 30  CKFDSIDDAVALFHRMVDMHPLPSIVEFTKILGTIAKMRYYATAIDLYTLMEYKGVVPFT 89

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            T+NI++  +   GQ++ A+    ++ K  C  +VVT+TT++ GF V  ++  A  ++D 
Sbjct: 90  VTFNILINCFCHMGQMDFAFSVMGKILKWGCRPNVVTFTTLMKGFCVNDKMLDALYIYDE 149

Query: 303 MVNGGVLPSVATYNAMIQVLCKKD--SVENAILVFEEMVGKGYM-PNSTTYNVVIRGLCH 359
           MV   +      Y  +I  LCK        A+ + ++M  +  + PN   YN V+ GLC 
Sbjct: 150 MVARRIRFDDVLYGTLINGLCKSKIGKPRAAVQLLQKMEERQLVKPNLIMYNTVVHGLCK 209

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE----------------IERGLE 403
            G +  A     +M      P++ TY+ LI   C AG+                ++   E
Sbjct: 210 DGNINEARVLCSKMIVQGIFPDIFTYSSLIYGLCRAGQRKEVTSLLNGFCLNNKVDEARE 269

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           LF  M       ++  YNIL++   +  K  +   A KL   MV+RG  P   T+  +++
Sbjct: 270 LFNVMIERGEQHDIINYNILMNGYCLNNKVGE---ARKLFHMMVERGEQPDTITYTILMH 326

Query: 464 GLLLIGNQGLAKEILRLQSRCGRLP 488
           G  LI     A+ +       G +P
Sbjct: 327 GYCLIDKVDEARNLFHGMIERGLVP 351



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 8/150 (5%)

Query: 320 QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
           Q  CK DS+++A+ +F  MV    +P+   +  ++  +        A++    M+     
Sbjct: 27  QSTCKFDSIDDAVALFHRMVDMHPLPSIVEFTKILGTIAKMRYYATAIDLYTLMEYKGVV 86

Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA 439
           P   T+NILI  FC  G+++    +  K+    C PN+ T+  L+    V   +D +L A
Sbjct: 87  PFTVTFNILINCFCHMGQMDFAFSVMGKILKWGCRPNVVTFTTLMKGFCV---NDKMLDA 143

Query: 440 GKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
             +  EMV      R+  F+ VL G L+ G
Sbjct: 144 LYIYDEMV-----ARRIRFDDVLYGTLING 168


>gi|334183628|ref|NP_001185309.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
 gi|193806276|sp|P0C7R3.1|PP106_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g64583, mitochondrial; Flags: Precursor
 gi|332196135|gb|AEE34256.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
          Length = 512

 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 104/381 (27%), Positives = 183/381 (48%), Gaps = 4/381 (1%)

Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           +H   SF   I    R        +++ +M  L   P+  TF  +   +    +   A  
Sbjct: 103 SHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFS 162

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWC 218
           + + M + G   ++  +NT++D LCK  ++  A  L      K   ADV++YN +  G C
Sbjct: 163 LVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLC 222

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
              R + A  +L++M+ R +NP++ T+  ++  + + G ++EA   + EM +   + + V
Sbjct: 223 YSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNV 282

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TY +I++G  + G +  A+  FD M + G  P+V TYN +I   CK   V+  + +F+ M
Sbjct: 283 TYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRM 342

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
             +G+  +  TYN +I G C  G++  AL+    M      P++ T+ IL+   C  GEI
Sbjct: 343 SCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEI 402

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           E  L  F+ M        +  YNI+I  +    K+D +  A +L   +   G  P   T+
Sbjct: 403 ESALVKFDDMRESEKYIGIVAYNIMIHGLC---KADKVEKAWELFCRLPVEGVKPDARTY 459

Query: 459 NRVLNGLLLIGNQGLAKEILR 479
             ++ GL   G +  A E++R
Sbjct: 460 TIMILGLCKNGPRREADELIR 480



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 170/351 (48%), Gaps = 3/351 (0%)

Query: 89  FFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERY 148
           FF ++   P    S   F   +   A LR Y TV     +M+   +     +F I+   +
Sbjct: 59  FFEMVHSQPL--PSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCF 116

Query: 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADV 207
               +   A+ +   M + G   S+ +F ++L   C   ++  A++L  +  +  ++ +V
Sbjct: 117 CRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNV 176

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           + YN + +G C     N ALE+L EM  +GL  ++ TYN +L G   +G+  +A R   +
Sbjct: 177 VVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRD 236

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M KR    DVVT+T ++  F   G +  A+ ++  M+   V P+  TYN++I  LC    
Sbjct: 237 MMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGR 296

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
           + +A   F+ M  KG  PN  TYN +I G C    ++  ++   RM  +    ++ TYN 
Sbjct: 297 LYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNT 356

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
           LI  +C  G++   L++F  M S    P++ T+ IL+  + V  + +  LV
Sbjct: 357 LIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALV 407



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 152/307 (49%), Gaps = 4/307 (1%)

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKR 222
           M  +G    L SF  ++   C+  ++  A ++  K+ +  ++  ++++  + +G+CLV R
Sbjct: 97  MELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNR 156

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
              A  ++  MV  G  PN+  YN ++ G  + G++  A     EM+K+    DVVTY T
Sbjct: 157 IGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNT 216

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++ G    G    A  +   M+   + P V T+ A+I V  K+ +++ A  +++EM+   
Sbjct: 217 LLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSS 276

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
             PN+ TYN +I GLC  G +  A +    M    C PNV TYN LI  FC    ++ G+
Sbjct: 277 VDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGM 336

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           +LF++M       ++ TYN LI       K   L VA  +   MV R   P   T   +L
Sbjct: 337 KLFQRMSCEGFNADIFTYNTLIHGYCQVGK---LRVALDIFCWMVSRRVTPDIITHCILL 393

Query: 463 NGLLLIG 469
           +GL + G
Sbjct: 394 HGLCVNG 400



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 152/318 (47%), Gaps = 1/318 (0%)

Query: 92  ILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSA 151
           IL     Y  +   ++  ID   +  +      L++ M+   LG    T+  +      +
Sbjct: 165 ILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYS 224

Query: 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISY 210
           G+   A ++   M +      + +F  ++D+  K+  +++A  L+K + +     + ++Y
Sbjct: 225 GRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTY 284

Query: 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
           N I NG C+  R   A +    M  +G  PN+ TYN ++ G+ +   ++E  + F  M  
Sbjct: 285 NSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSC 344

Query: 271 RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
                D+ TY T++HG+  VG+++ A ++F  MV+  V P + T+  ++  LC    +E+
Sbjct: 345 EGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIES 404

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           A++ F++M           YN++I GLC   ++E+A E   R+  +  +P+ +TY I+I 
Sbjct: 405 ALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMIL 464

Query: 391 YFCDAGEIERGLELFEKM 408
             C  G      EL  +M
Sbjct: 465 GLCKNGPRREADELIRRM 482



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 139/273 (50%), Gaps = 9/273 (3%)

Query: 119 YRTVWT----LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           Y   W+    ++  M   S+ P   TF  + + +V  G  D A +++  M +     +  
Sbjct: 223 YSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNV 282

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
           ++N+I++ LC   ++  A   F +   +G F  +V++YN + +G+C  +  ++ +++ + 
Sbjct: 283 TYNSIINGLCMHGRLYDAKKTFDLMASKGCF-PNVVTYNTLISGFCKFRMVDEGMKLFQR 341

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M   G N ++ TYN ++ GY + G++  A   F  M  R+   D++T+  ++HG  V GE
Sbjct: 342 MSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGE 401

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           I+ A   FD M        +  YN MI  LCK D VE A  +F  +  +G  P++ TY +
Sbjct: 402 IESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTI 461

Query: 353 VIRGLCHTGEMERALEFVGRMKDDE--CEPNVQ 383
           +I GLC  G    A E + RMK++   C+ N +
Sbjct: 462 MILGLCKNGPRREADELIRRMKEEGIICQMNAE 494



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 120/267 (44%), Gaps = 3/267 (1%)

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
           R   A  +  EMV     P++  +  +L       + E    F  +M+      D+ ++T
Sbjct: 51  RFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFT 110

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
            ++H F     +  A +V   M+  G  PS+ T+ +++   C  + + +A  +   MV  
Sbjct: 111 ILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKS 170

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
           GY PN   YN +I GLC  GE+  ALE +  M+      +V TYN L+   C +G     
Sbjct: 171 GYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDA 230

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
             +   M      P++ T+  LI  +FV++ + D   A +L  EM+     P   T+N +
Sbjct: 231 ARMLRDMMKRSINPDVVTFTALI-DVFVKQGNLD--EAQELYKEMIQSSVDPNNVTYNSI 287

Query: 462 LNGLLLIGNQGLAKEILRLQSRCGRLP 488
           +NGL + G    AK+   L +  G  P
Sbjct: 288 INGLCMHGRLYDAKKTFDLMASKGCFP 314


>gi|222630089|gb|EEE62221.1| hypothetical protein OsJ_17008 [Oryza sativa Japonica Group]
          Length = 584

 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 102/392 (26%), Positives = 173/392 (44%), Gaps = 36/392 (9%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           ++H +D   R      V  +   M+   + P   T+ ++        + D A K+   M 
Sbjct: 72  YNHLLDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRALCQNDRVDAARKMLDEMS 131

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKA------------------------YNLFKVF-- 199
             GC     S  TI+  +CK  +VE+A                        + +++VF  
Sbjct: 132 RKGCHPDEVSHGTIVSGMCKLGRVEEARGFLAETVPVQASYNAVVHALCGEFRMWEVFSV 191

Query: 200 ------RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
                 RG  + +V++Y  I + +C  +    A  +L  MV  G  PN+ T+  ++KG+F
Sbjct: 192 VNEMVQRG-LQPNVVTYTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTALVKGFF 250

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
             G++ +A   +  M         ++Y  ++ G   +G++K A + F+ M    +LP+  
Sbjct: 251 EDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNAT 310

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           TY+ ++        ++ A+L++ EM   G  PN   Y  +I  LC     ++A   + +M
Sbjct: 311 TYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKM 370

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
             D C PN  T+N LI   CD G + R L +F  M    C PN  TYN L+  +F     
Sbjct: 371 LMDNCPPNTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNH 430

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            D   A  ++IEM++ GF     T+N V+N L
Sbjct: 431 KD---AFAMVIEMLNNGFELSLVTYNTVINCL 459



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/403 (27%), Positives = 189/403 (46%), Gaps = 35/403 (8%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ-SLNSF 176
           D   V   +  M+   +  T+         +  AG ADRA+K F    + GCR   +  +
Sbjct: 13  DVDGVQYALQEMRLRGVACTEDALVAAIGAFARAGSADRALKTFYRASDLGCRDPGVRVY 72

Query: 177 NTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235
           N +LD L +E  V     ++   R      +V +YN++    C   R + A ++L EM  
Sbjct: 73  NHLLDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRALCQNDRVDAARKMLDEMSR 132

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEA---------------------------WRFFL-- 266
           +G +P+  ++  ++ G  + G++EEA                           W  F   
Sbjct: 133 KGCHPDEVSHGTIVSGMCKLGRVEEARGFLAETVPVQASYNAVVHALCGEFRMWEVFSVV 192

Query: 267 -EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
            EM +R  + +VVTYTTIV  F    E++ A  +   MV+ G  P+V T+ A+++   + 
Sbjct: 193 NEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTALVKGFFED 252

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
             V +A+ ++  MV +G+ P++ +YNV+IRGLC  G+++ AL+F   MK +   PN  TY
Sbjct: 253 GKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTY 312

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           + L+  F +AG+++  + ++ +M S  C PN+  Y  +I  +  +   D    A  L+ +
Sbjct: 313 STLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQ---AESLIDK 369

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           M+     P   TFN ++  L   G  G A  +     R G  P
Sbjct: 370 MLMDNCPPNTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHP 412



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 167/374 (44%), Gaps = 39/374 (10%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
           V+++V+ M    L P   T+  I + +  A +   A  I   M   GC  ++ +F  ++ 
Sbjct: 188 VFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTALVK 247

Query: 182 LLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
              ++ KV  A +++  +    +    ISYNV+  G C +     AL+    M    L P
Sbjct: 248 GFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLP 307

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT------------------- 281
           N TTY+ ++ G+  AG ++ A   + EMK   C+ +VV YT                   
Sbjct: 308 NATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLI 367

Query: 282 ----------------TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
                           T++      G + RA NVF GM   G  P+  TYN ++  L ++
Sbjct: 368 DKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFRE 427

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
            + ++A  +  EM+  G+  +  TYN VI  LC     + A+  +GRM     +P+  T+
Sbjct: 428 GNHKDAFAMVIEMLNNGFELSLVTYNTVINCLCQMCMRKHAMLLLGRMMVQGIQPDAFTF 487

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           N +I  +C  G++     L  +M +  C  N+  Y ILIS +  + K  + +V    L++
Sbjct: 488 NAIIHAYCKEGKVSIAACLLGQMNAVNCPRNVVAYTILISELCNQGKLSNAMV---YLLK 544

Query: 446 MVDRGFMPRKFTFN 459
           M+  G  P + T+N
Sbjct: 545 MLYEGICPNEATWN 558



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 149/302 (49%), Gaps = 2/302 (0%)

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           +A S  S++  I     + D +      + MK  +L P   T++ + + + +AG  D A+
Sbjct: 270 WAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAM 329

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGW 217
            I+  M   GC+ ++  +  ++D+LCK+   ++A +L  K+       + +++N +    
Sbjct: 330 LIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRL 389

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           C   R  +AL V   M   G +PN  TYN +L G FR G  ++A+   +EM     E+ +
Sbjct: 390 CDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSL 449

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           VTY T+++    +   K A  +   M+  G+ P   T+NA+I   CK+  V  A  +  +
Sbjct: 450 VTYNTVINCLCQMCMRKHAMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLLGQ 509

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR-YFCDAG 396
           M       N   Y ++I  LC+ G++  A+ ++ +M  +   PN  T+N+L+R  F + G
Sbjct: 510 MNAVNCPRNVVAYTILISELCNQGKLSNAMVYLLKMLYEGICPNEATWNVLVRAIFTNIG 569

Query: 397 EI 398
            I
Sbjct: 570 TI 571



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 88/216 (40%), Gaps = 9/216 (4%)

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL- 309
           G   AG ++       EM+ R            +  F   G   RA   F    + G   
Sbjct: 7   GLPAAGDVDGVQYALQEMRLRGVACTEDALVAAIGAFARAGSADRALKTFYRASDLGCRD 66

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           P V  YN ++  L +++ V   + V++ M   G  PN  TYN++IR LC    ++ A + 
Sbjct: 67  PGVRVYNHLLDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRALCQNDRVDAARKM 126

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
           +  M    C P+  ++  ++   C  G +E       +      +P   +YN ++ ++  
Sbjct: 127 LDEMSRKGCHPDEVSHGTIVSGMCKLGRVEEARGFLAET-----VPVQASYNAVVHALCG 181

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
             +  ++     ++ EMV RG  P   T+  +++  
Sbjct: 182 EFRMWEVF---SVVNEMVQRGLQPNVVTYTTIVDAF 214


>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 151/282 (53%), Gaps = 7/282 (2%)

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           S+ T+++ LCK  + +    L +   G   K DV+ YN I N  C  K    A +V  EM
Sbjct: 165 SYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEM 224

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE- 292
           + +G++P++ TY  ++ G+   G+++EA+    EMK +    DV T++ ++   G  G+ 
Sbjct: 225 IVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKK 284

Query: 293 --IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
             +  A ++F+ M +  ++P + TYN++I  LCK   +E AI + +EM   G  P+  +Y
Sbjct: 285 KMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSY 344

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
            +++ GLC  G +E A EF   +    C  NV  YN++I   C AG     ++L  KM  
Sbjct: 345 TILLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAGLFGEAMDLKSKMEG 404

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
             C+PN  T+  +I ++  + ++D    A K+L EM+ RG +
Sbjct: 405 KGCMPNAITFRTIICALSEKDENDK---AEKILREMIARGLL 443



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 113/434 (26%), Positives = 203/434 (46%), Gaps = 14/434 (3%)

Query: 54  RTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSS----FDHA 109
           RTL  +L  P   + P  +        +H+    H   + S++      P      F++ 
Sbjct: 8   RTLRLSLFPP---YPPIAIPTATLHYQSHSQPHYHHHAVASFNLMLLMRPPPPTFLFNNI 64

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           +    + + Y TV +L  + +   + P   T +I+   +        A  +F ++ + G 
Sbjct: 65  LSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSVFANILKRGF 124

Query: 170 RQSLNSFNTILDLLCKEKKVEKA-YNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
                + NT++  LC   +++K  Y   +V    F+ D +SY  + NG C    T     
Sbjct: 125 HPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQVSYGTLINGLCKAGETKAVAR 184

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           +L+++    + P++  YN ++    +   + +A   + EM  +    DVVTYTT++HGF 
Sbjct: 185 LLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFC 244

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK---KDSVENAILVFEEMVGKGYMP 345
           ++G++K A ++ + M    + P V T++ +I  L K   K  V+ A+ +FEEM  K  +P
Sbjct: 245 IMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKNMIP 304

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           +  TYN +I GLC    +ERA+  +  MK+   +P+V +Y IL+   C  G +E   E F
Sbjct: 305 DIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKGGRLEIAKEFF 364

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           + +    C  N+  YN++I+ +    K+     A  L  +M  +G MP   TF  ++  L
Sbjct: 365 QHLLVKGCHLNVWPYNVMINGLC---KAGLFGEAMDLKSKMEGKGCMPNAITFRTIICAL 421

Query: 466 LLIGNQGLAKEILR 479
                   A++ILR
Sbjct: 422 SEKDENDKAEKILR 435



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 140/276 (50%), Gaps = 6/276 (2%)

Query: 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK 197
           Q ++  +      AG+     ++   +  H  +  +  +NTI++ LCK K +  A +++ 
Sbjct: 163 QVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYS 222

Query: 198 --VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
             + +G    DV++Y  + +G+C++ +  +A  +L EM  + +NP++ T+++++    + 
Sbjct: 223 EMIVKG-ISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKE 281

Query: 256 GQ---IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
           G+   ++EA   F EMK +    D+VTY +++ G      ++RA  +   M   G+ P V
Sbjct: 282 GKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDV 341

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            +Y  ++  LCK   +E A   F+ ++ KG   N   YNV+I GLC  G    A++   +
Sbjct: 342 YSYTILLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAGLFGEAMDLKSK 401

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           M+   C PN  T+  +I    +  E ++  ++  +M
Sbjct: 402 MEGKGCMPNAITFRTIICALSEKDENDKAEKILREM 437



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 106/241 (43%), Gaps = 3/241 (1%)

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           P    +N +L    +  +       F + +      D+ T + +++ F     I  A +V
Sbjct: 56  PPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSV 115

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
           F  ++  G  P   T N +I+ LC +  ++  +   +++V +G+  +  +Y  +I GLC 
Sbjct: 116 FANILKRGFHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQVSYGTLINGLCK 175

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419
            GE +     + +++    +P+V  YN +I   C    +    +++ +M      P++ T
Sbjct: 176 AGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVT 235

Query: 420 YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           Y  LI    +  K  +   A  LL EM  +   P  +TF+ +++ L   G + +  E + 
Sbjct: 236 YTTLIHGFCIMGKMKE---AFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDEAMS 292

Query: 480 L 480
           L
Sbjct: 293 L 293



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 1/149 (0%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           +L   MK  ++ P   T+  + +        +RA+ +   M EHG +  + S+  +LD L
Sbjct: 292 SLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGL 351

Query: 184 CKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CK  ++E A   F+    K    +V  YNV+ NG C      +A+++  +M  +G  PN 
Sbjct: 352 CKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAGLFGEAMDLKSKMEGKGCMPNA 411

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
            T+  ++       + ++A +   EM  R
Sbjct: 412 ITFRTIICALSEKDENDKAEKILREMIAR 440



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 60/135 (44%), Gaps = 1/135 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   +         L+  MK   + P   ++ I+ +     G+ + A + F  +
Sbjct: 308 TYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKGGRLEIAKEFFQHL 367

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
              GC  ++  +N +++ LCK     +A +L     GK    + I++  I          
Sbjct: 368 LVKGCHLNVWPYNVMINGLCKAGLFGEAMDLKSKMEGKGCMPNAITFRTIICALSEKDEN 427

Query: 224 NKALEVLKEMVDRGL 238
           +KA ++L+EM+ RGL
Sbjct: 428 DKAEKILREMIARGL 442


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 188/389 (48%), Gaps = 13/389 (3%)

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           +  S ++  + +D   +  +  + + LV+++K   + P+   +  +       GK D A 
Sbjct: 316 FVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAE 375

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGW 217
            +F +M   G   +  +++ ++D  CK  K++ A + L K+     KA V  Y+ + +G 
Sbjct: 376 SLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGH 435

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           C + +   A  +  EM+  GL PN+  Y  ++ GY + G++  A+R + EM  +    + 
Sbjct: 436 CKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNT 495

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
            T+T ++ G      +  A  +F  MV   V+P+  TYN +I+  CK+ +   A  + +E
Sbjct: 496 YTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDE 555

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE--------CEPNVQTYNILI 389
           MV KG +P++ TY  +I GLC TG +  A EF+  ++ ++        C PNV TY  LI
Sbjct: 556 MVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALI 615

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
              C  G +++   L  +M +   LPN +TY   +  +      +  +    +L+E    
Sbjct: 616 NGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLE---- 671

Query: 450 GFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           GF+    T+N ++ G   +G    A E+L
Sbjct: 672 GFLANTVTYNILIRGFCKLGRIQEAAEVL 700



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/335 (29%), Positives = 167/335 (49%), Gaps = 10/335 (2%)

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKR 222
           M E G   S  + + ++D L K+  +  A++L  KV +      +  YN + N  C   +
Sbjct: 311 MIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGK 370

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
            ++A  +   M  +GL PN  TY+I++  + + G+++ A  F  +M +   +  V  Y++
Sbjct: 371 LDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSS 430

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++ G   +G+++ A+++FD M+  G+ P+V  Y ++I   CK+  + NA  ++ EM GKG
Sbjct: 431 LISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKG 490

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
             PN+ T+  +I GLCH   M  A +  G M +    PN  TYN+LI   C  G   R  
Sbjct: 491 ISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAF 550

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMF-------VRKKSDDLLVAGKLLIEMVDRGFMPRK 455
           EL ++M     +P+  TY  LIS +         R+  +DL    + L E+   G +P  
Sbjct: 551 ELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEI--EGCLPNV 608

Query: 456 FTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
            T+  ++NGL  IG    A+ + R       LP Q
Sbjct: 609 VTYTALINGLCKIGLMDKAELLCREMLASNSLPNQ 643



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/400 (24%), Positives = 171/400 (42%), Gaps = 39/400 (9%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           R+R +R    L   + S  L P    +  +           RA ++   M   GC  S+ 
Sbjct: 192 RIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVA 251

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           ++N  +  LCK ++V +A  +  +   K  +ADV +Y  +  G C V+      E++ EM
Sbjct: 252 TYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEM 311

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           ++ G  P+    + ++ G  + G I  A+    ++KK      +  Y  +++     G++
Sbjct: 312 IEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKL 371

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI--------------------- 332
             A ++F+ M + G+ P+  TY+ +I   CK+  ++ A+                     
Sbjct: 372 DEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSL 431

Query: 333 --------------LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
                          +F+EM+  G  PN   Y  +I G C  GE+  A      M     
Sbjct: 432 ISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGI 491

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
            PN  T+  LI   C A  +    +LF +M     +PN  TYN+LI       K  + + 
Sbjct: 492 SPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEG---HCKEGNTVR 548

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           A +LL EMV++G +P  +T+  +++GL   G    A+E +
Sbjct: 549 AFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFM 588



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 114/450 (25%), Positives = 194/450 (43%), Gaps = 56/450 (12%)

Query: 69  PQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHR 128
           P  V++++ +  + +  AL FFN L  H  + HS +SF   I    +   Y    +L+  
Sbjct: 59  PHHVEKVLIQTLDDSRLALRFFNFLGLHKNFDHSTTSFCILIHALVQSNLYWPASSLLQT 118

Query: 129 MKSLSLGP-----------------TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ 171
           +    L P                 T   F ++ + YV   +    + +   M + G   
Sbjct: 119 LLLRGLNPEGLFESFLDSYRKCNFSTTLGFDLLIQTYVQNRRELDGLVVVRLMMDCGILP 178

Query: 172 SLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVL 230
            + + + +L+ L + ++   A +LF ++     + DV  Y  +    C +K   +A EV+
Sbjct: 179 QIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVI 238

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG---- 286
             M   G + ++ TYN+ ++G  +  ++ EA      +  +    DV TY T+V G    
Sbjct: 239 GRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKV 298

Query: 287 ---------------FGVVGEIKRARNVFDG------------MVNG----GVLPSVATY 315
                          FG V       N+ DG            +VN     GV PS+  Y
Sbjct: 299 EEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVY 358

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           NA+I  +CK   ++ A  +F  M  KG  PN  TY+++I   C  G+++ AL F+G+M +
Sbjct: 359 NALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTE 418

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
              +  V  Y+ LI   C  G++     LF++M +    PN+  Y  LIS      K  +
Sbjct: 419 VGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYC---KEGE 475

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           L  A +L  EM  +G  P  +TF  +++GL
Sbjct: 476 LHNAFRLYHEMTGKGISPNTYTFTALISGL 505



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 97/398 (24%), Positives = 167/398 (41%), Gaps = 48/398 (12%)

Query: 71  LVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMK 130
           L+D   KR       ALHF   ++     A +   +   I    +L   R   +L   M 
Sbjct: 396 LIDSFCKR--GKLDVALHFLGKMTEVGIKA-TVYPYSSLISGHCKLGKLRAAKSLFDEMI 452

Query: 131 SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190
           +  L P    +  +   Y   G+   A +++  M   G   +  +F  ++  LC   ++ 
Sbjct: 453 ANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMA 512

Query: 191 KAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL 249
           +A  LF ++       + ++YNV+  G C    T +A E+L EMV++GL P+  TY  ++
Sbjct: 513 EANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLI 572

Query: 250 KGYFRAGQIEEAWRFFLEMKKRK--------CEIDVVTYTTIVHGFGVVG---------- 291
            G    G++ EA  F  +++  +        C  +VVTYT +++G   +G          
Sbjct: 573 SGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCR 632

Query: 292 -------------------------EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
                                     I++A  + D ++ G  L +  TYN +I+  CK  
Sbjct: 633 EMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEG-FLANTVTYNILIRGFCKLG 691

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            ++ A  V   M+  G  P+  +Y+ +I   C  G+++ A++    M +    P+   YN
Sbjct: 692 RIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYN 751

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
            LI   C  GE+ +  EL + M      PN  TYN LI
Sbjct: 752 FLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLI 789



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 133/290 (45%), Gaps = 10/290 (3%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L   M   ++ P + T+ ++ E +   G   RA ++   M E G      ++  ++  LC
Sbjct: 517 LFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLC 576

Query: 185 KEKKVEKAYNLFKVFRGKFKA---------DVISYNVIANGWCLVKRTNKALEVLKEMVD 235
              +V +A       +G+ +          +V++Y  + NG C +   +KA  + +EM+ 
Sbjct: 577 STGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLA 636

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
               PN  TY   L      G IE+A +   ++       + VTY  ++ GF  +G I+ 
Sbjct: 637 SNSLPNQNTYACFLDYLTSEGNIEKAIQLH-DVLLEGFLANTVTYNILIRGFCKLGRIQE 695

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
           A  V   M++ G+ P   +Y+ +I   C++  ++ AI ++E M+ +G  P++  YN +I 
Sbjct: 696 AAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIY 755

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           G C TGE+ +A E    M     +PN  TYN LI   C    +    + F
Sbjct: 756 GCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCLMSSVSSTADYF 805



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 137/323 (42%), Gaps = 42/323 (13%)

Query: 195 LFKVFRGKFK----ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250
           LF+ F   ++    +  + ++++   +   +R    L V++ M+D G+ P + T + VL 
Sbjct: 129 LFESFLDSYRKCNFSTTLGFDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLN 188

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
           G  R  Q   A   F E+       DV  YT +V     + +  RAR V   M + G   
Sbjct: 189 GLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDL 248

Query: 311 SVATYNAMIQVLCKKDSVENAILV----------------------------FE------ 336
           SVATYN  I+ LCK   V  A+ +                            FE      
Sbjct: 249 SVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMM 308

Query: 337 -EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
            EM+  G++P+    + ++ GL   G +  A + V ++K     P++  YN LI   C  
Sbjct: 309 NEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKD 368

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
           G+++    LF  MG     PN  TY+ILI S   R K D   VA   L +M + G     
Sbjct: 369 GKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLD---VALHFLGKMTEVGIKATV 425

Query: 456 FTFNRVLNGLLLIGNQGLAKEIL 478
           + ++ +++G   +G    AK + 
Sbjct: 426 YPYSSLISGHCKLGKLRAAKSLF 448



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 95/189 (50%), Gaps = 3/189 (1%)

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M++ G+LP + T + ++  L +      A+ +F+E+V  G  P+   Y  V+R LC   +
Sbjct: 171 MMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKD 230

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
             RA E +GRM+   C+ +V TYN+ IR  C    +   +E+   +       ++ TY  
Sbjct: 231 FIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCT 290

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           L+  +    K ++     +++ EM++ GF+P +   + +++GL   GN G A +++    
Sbjct: 291 LVLGLC---KVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVK 347

Query: 483 RCGRLPRQF 491
           + G  P  F
Sbjct: 348 KFGVAPSLF 356



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 89/179 (49%), Gaps = 2/179 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN- 194
           P Q T+A   +   S G  ++A+++   + E G   +  ++N ++   CK  ++++A   
Sbjct: 641 PNQNTYACFLDYLTSEGNIEKAIQLHDVLLE-GFLANTVTYNILIRGFCKLGRIQEAAEV 699

Query: 195 LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           L  +       D ISY+ I   +C      +A+++ + M++RG+NP+   YN ++ G   
Sbjct: 700 LVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCV 759

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
            G++ +A+    +M +R  + +  TY +++HG  ++  +    + F   +N   L S +
Sbjct: 760 TGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCLMSSVSSTADYFSCKLNWCFLLSCS 818


>gi|356571194|ref|XP_003553764.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g04760, chloroplastic-like [Glycine max]
          Length = 531

 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 173/334 (51%), Gaps = 10/334 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           PT  T+ I+ E  +  G  D A+K+   M E   +  +  +N+I+  +C+E  V++A+ +
Sbjct: 157 PTVVTYTILIEATLLQGGIDEAIKLLDEMFEINLQPDVFPYNSII-XMCREGYVDRAFEV 215

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
                 K +  DVI+YN++        +     E++ +MV +G   N+ TY++++    R
Sbjct: 216 ISSISSKGYALDVITYNILLRSLXNQGKWEAGFELMSDMVAKGCEANVVTYSVLISSLCR 275

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G++EE      +MKK+  E D   Y  ++      G +  A  V D M++ G +P +  
Sbjct: 276 DGKVEEGVGLLKDMKKKGLEPDGYCYDPLIAVLCKEGRVDLAIEVLDVMISDGCVPDIVN 335

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN ++  LCK+   + A+ +FE++   G  PN+++YN V   L  +G   RAL  +  M 
Sbjct: 336 YNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNTVFSALGSSGHKVRALGMILEML 395

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELF--EKMGSGVCLPNLDTYNILISSMF-VRK 431
            D  +P+V  YN LI   C  G ++  +EL    +M S  C P++ +YNI++  +  V +
Sbjct: 396 -DXVDPDVIAYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCRVGR 454

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            SD    A ++L  MVD+G +P + T+  ++ G+
Sbjct: 455 VSD----ATEVLAAMVDKGCLPNETTYTFLIEGI 484



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 137/280 (48%), Gaps = 5/280 (1%)

Query: 187 KKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
           + +  AY +    + K F  D+++YN++    C     + ALE   +++    NP + TY
Sbjct: 103 ESIPHAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLHAALEFKNQLLKENFNPTVVTY 162

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
            I+++     G I+EA +   EM +   + DV  Y +I+      G + RA  V   + +
Sbjct: 163 TILIEATLLQGGIDEAIKLLDEMFEINLQPDVFPYNSIIX-MCREGYVDRAFEVISSISS 221

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G    V TYN +++ L  +   E    +  +MV KG   N  TY+V+I  LC  G++E 
Sbjct: 222 KGYALDVITYNILLRSLXNQGKWEAGFELMSDMVAKGCEANVVTYSVLISSLCRDGKVEE 281

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
            +  +  MK    EP+   Y+ LI   C  G ++  +E+ + M S  C+P++  YN +++
Sbjct: 282 GVGLLKDMKKKGLEPDGYCYDPLIAVLCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILA 341

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            +  +K++D+ L   + L E+   G  P   ++N V + L
Sbjct: 342 CLCKQKRADEALSIFEKLGEV---GCSPNASSYNTVFSAL 378



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 128/262 (48%), Gaps = 7/262 (2%)

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
           A +VL  M ++G +P++ TYNI++      G +  A  F  ++ K      VVTYT ++ 
Sbjct: 108 AYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLHAALEFKNQLLKENFNPTVVTYTILIE 167

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
              + G I  A  + D M    + P V  YN++I  +C++  V+ A  V   +  KGY  
Sbjct: 168 ATLLQGGIDEAIKLLDEMFEINLQPDVFPYNSIIX-MCREGYVDRAFEVISSISSKGYAL 226

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           +  TYN+++R L + G+ E   E +  M    CE NV TY++LI   C  G++E G+ L 
Sbjct: 227 DVITYNILLRSLXNQGKWEAGFELMSDMVAKGCEANVVTYSVLISSLCRDGKVEEGVGLL 286

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           + M      P+   Y+ LI+ +    + D   +A ++L  M+  G +P    +N +L  L
Sbjct: 287 KDMKKKGLEPDGYCYDPLIAVLCKEGRVD---LAIEVLDVMISDGCVPDIVNYNTILACL 343

Query: 466 LLIGNQGLAKEILRLQSRCGRL 487
                Q  A E L +  + G +
Sbjct: 344 C---KQKRADEALSIFEKLGEV 362



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 109/233 (46%), Gaps = 4/233 (1%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           T++++       GK +  V +   M + G       ++ ++ +LCKE +V+ A  +  V 
Sbjct: 265 TYSVLISSLCRDGKVEEGVGLLKDMKKKGLEPDGYCYDPLIAVLCKEGRVDLAIEVLDVM 324

Query: 200 -RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
                  D+++YN I    C  KR ++AL + +++ + G +PN ++YN V      +G  
Sbjct: 325 ISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNTVFSALGSSGHK 384

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV--NGGVLPSVATYN 316
             A    LEM     + DV+ Y +++      G +  A  +   M   +    PSV +YN
Sbjct: 385 VRALGMILEMLD-XVDPDVIAYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYN 443

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
            ++  LC+   V +A  V   MV KG +PN TTY  +I G+   G +  A + 
Sbjct: 444 IVLLGLCRVGRVSDATEVLAAMVDKGCLPNETTYTFLIEGIGFGGWLNDARDL 496



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 100/199 (50%), Gaps = 4/199 (2%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  MK   L P    +  +       G+ D A+++   M   GC   + ++NTIL  LC
Sbjct: 285 LLKDMKKKGLEPDGYCYDPLIAVLCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLC 344

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K+K+ ++A ++F K+       +  SYN + +         +AL ++ EM+D  ++P++ 
Sbjct: 345 KQKRADEALSIFEKLGEVGCSPNASSYNTVFSALGSSGHKVRALGMILEMLDX-VDPDVI 403

Query: 244 TYNIVLKGYFRAGQIEEAWRFF--LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
            YN ++    R G ++EA      +EM+  +C+  VV+Y  ++ G   VG +  A  V  
Sbjct: 404 AYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCRVGRVSDATEVLA 463

Query: 302 GMVNGGVLPSVATYNAMIQ 320
            MV+ G LP+  TY  +I+
Sbjct: 464 AMVDKGCLPNETTYTFLIE 482



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 73/141 (51%), Gaps = 4/141 (2%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           ++  ++  +   P   ++  +     S+G   RA+ + L M +      + ++N+++  L
Sbjct: 354 SIFEKLGEVGCSPNASSYNTVFSALGSSGHKVRALGMILEMLDX-VDPDVIAYNSLISCL 412

Query: 184 CKEKKVEKAYNLF---KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
           C++  V++A  L    ++   + K  V+SYN++  G C V R + A EVL  MVD+G  P
Sbjct: 413 CRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCRVGRVSDATEVLAAMVDKGCLP 472

Query: 241 NLTTYNIVLKGYFRAGQIEEA 261
           N TTY  +++G    G + +A
Sbjct: 473 NETTYTFLIEGIGFGGWLNDA 493



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 7/147 (4%)

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
           +S+ +A  V + M  KG+ P+  TYN++I  LC  G +  ALEF  ++  +   P V TY
Sbjct: 103 ESIPHAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLHAALEFKNQLLKENFNPTVVTY 162

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
            ILI      G I+  ++L ++M      P++  YN +I     R+   D   A +++  
Sbjct: 163 TILIEATLLQGGIDEAIKLLDEMFEINLQPDVFPYNSII--XMCREGYVDR--AFEVISS 218

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQG 472
           +  +G+     T+N +L  L    NQG
Sbjct: 219 ISSKGYALDVITYNILLRSLX---NQG 242



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 3/103 (2%)

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419
           T  +  A + + RMK+    P++ TYNILI   C  G +   LE   ++      P + T
Sbjct: 102 TESIPHAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLHAALEFKNQLLKENFNPTVVT 161

Query: 420 YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           Y ILI +  ++   D+   A KLL EM +    P  F +N ++
Sbjct: 162 YTILIEATLLQGGIDE---AIKLLDEMFEINLQPDVFPYNSII 201


>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 822

 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 110/428 (25%), Positives = 207/428 (48%), Gaps = 10/428 (2%)

Query: 68  TPQLVDQIIKRLWNHALKALHFFNILSYH-PTYAHSPSSFDHAIDLAARLRDYRT--VWT 124
           T  +V  I+ +   HA ++    N+L +  P     P +  ++  L +   D R+     
Sbjct: 152 TDVIVANILLKCLCHAKRSDDAVNVLLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALD 211

Query: 125 LVHRM--KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           L+H M  KS    P   ++  +   +   G+  +A  +F  M + G    + ++++ +D 
Sbjct: 212 LLHTMVKKSGGCSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDA 271

Query: 183 LCKEKKVEKA-YNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           LCK + ++KA   L ++    F+ D ++YN + +G+ ++ +  +   + +EM  RGL P+
Sbjct: 272 LCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPD 331

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           + T N  +    + G+ +EA  FF  M  +  + D+VTY+ ++HG+   G +    N+F+
Sbjct: 332 IFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFN 391

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M   G++   + YN +I    K+  ++ A+L+F +M  +G MP++ TY  VI      G
Sbjct: 392 SMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMG 451

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF-EKMGSGVCLPNLDTY 420
            +  A++   +M     +P+   YN LI+ FC  G + +  EL  E M  G+  PN   +
Sbjct: 452 RLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFF 511

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           N +I+S+    K   ++ A  +   ++  G  P   TFN +++G  L+G    A  +L  
Sbjct: 512 NSIINSLC---KEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDA 568

Query: 481 QSRCGRLP 488
               G  P
Sbjct: 569 MISVGIEP 576



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/412 (24%), Positives = 198/412 (48%), Gaps = 18/412 (4%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTV--WTLVHRMKSLSLGPTQKTFA 142
           +A  FF+ ++      H P    +++ L     +   V    L + M+   +      + 
Sbjct: 350 EAAEFFDSMA---AKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYN 406

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRG 201
           I+ + Y   G  D A+ IF  M E G      ++ T++    +  ++  A + F ++   
Sbjct: 407 ILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAM 466

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL-NPNLTTYNIVLKGYFRAGQIEE 260
             K D I YN +  G+C+     KA E++ EM+ RG+  PN   +N ++    + G++ E
Sbjct: 467 GLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVE 526

Query: 261 AWRFF---LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           A   F   + + +R    DV+T+ +++ G+G+VG++++A  V D M++ G+ P V TY+A
Sbjct: 527 AQDIFDLVIHIGERP---DVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSA 583

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           ++   C+   +++ +++F EM+ KG  P + TY +++ GL + G    A +    M +  
Sbjct: 584 LLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESG 643

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF-VRKKSDDL 436
              ++ T  I++   C     +  + LF+K+G+     N+   N +I +M+ VRK+ +  
Sbjct: 644 TTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTMIDAMYKVRKREE-- 701

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             A +L   +   G +P   T+  ++  LL  G+   A  +  L  + G  P
Sbjct: 702 --ANELFDSISATGLVPNASTYGVMITNLLKEGSVEEADNMFSLMEKSGCAP 751



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 156/334 (46%), Gaps = 42/334 (12%)

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEV-LKE 232
           ++N ++D  C+  +    + LF  F +   K DVI  N++    C  KR++ A+ V L  
Sbjct: 121 TYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANILLKCLCHAKRSDDAVNVLLHR 180

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK--CEIDVVTYTTIVHGFGVV 290
           M + G+ P+  +Y+ VLK      + + A      M K+   C  +VV+Y T++HGF   
Sbjct: 181 MPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVIHGFFRE 240

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           GE+ +A N+F  M+  GV+P V TY++ I  LCK  +++ A LV  +M+  G+ P+  TY
Sbjct: 241 GEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTY 300

Query: 351 NVVIRG-----------------------------------LCHTGEMERALEFVGRMKD 375
           N +I G                                   LC  G+ + A EF   M  
Sbjct: 301 NCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAA 360

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
              +P++ TY++L+  +   G +   L LF  M     + +   YNILI +   R   D+
Sbjct: 361 KGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDE 420

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
            ++   +  +M +RG MP  +T+  V+     +G
Sbjct: 421 AML---IFTQMQERGVMPDAWTYGTVIAAFSRMG 451



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 165/368 (44%), Gaps = 40/368 (10%)

Query: 103 PSSFDHAIDLAARLRDYRTVWTL--VHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P ++ +   +AA  R  R    +   ++M ++ L P    +  + + +   G   +A ++
Sbjct: 435 PDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKEL 494

Query: 161 FLSMHEHGC-RQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWC 218
              M   G  R +   FN+I++ LCKE +V +A ++F  V     + DVI++N + +G+ 
Sbjct: 495 ISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYG 554

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
           LV +  KA  VL  M+  G+ P++ TY+ +L GY R G+I++    F EM  +  +   +
Sbjct: 555 LVGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTI 614

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TY  I+HG    G    A+ +   M+  G    ++T   ++  LC+ +  + AI +F+++
Sbjct: 615 TYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKL 674

Query: 339 -----------------------------------VGKGYMPNSTTYNVVIRGLCHTGEM 363
                                                 G +PN++TY V+I  L   G +
Sbjct: 675 GAMNVKFNIAIINTMIDAMYKVRKREEANELFDSISATGLVPNASTYGVMITNLLKEGSV 734

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           E A      M+   C P+ +  N +IR   + GEI +      K+          T +++
Sbjct: 735 EEADNMFSLMEKSGCAPSSRLLNNIIRVLLEKGEISKAGNYLSKVDGKTISLEASTASLM 794

Query: 424 ISSMFVRK 431
           + S+F RK
Sbjct: 795 L-SLFSRK 801



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 124/263 (47%), Gaps = 1/263 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   TF  + + Y   GK ++A  +  +M   G    + +++ +LD  C+  +++    L
Sbjct: 541 PDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLIL 600

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F+    K  K   I+Y +I +G     RT  A ++  EM++ G   +++T  I+L G  R
Sbjct: 601 FREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCR 660

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
               +EA   F ++     + ++    T++     V + + A  +FD +   G++P+ +T
Sbjct: 661 NNCDDEAIALFKKLGAMNVKFNIAIINTMIDAMYKVRKREEANELFDSISATGLVPNAST 720

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y  MI  L K+ SVE A  +F  M   G  P+S   N +IR L   GE+ +A  ++ ++ 
Sbjct: 721 YGVMITNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNNIIRVLLEKGEISKAGNYLSKVD 780

Query: 375 DDECEPNVQTYNILIRYFCDAGE 397
                    T ++++  F   G+
Sbjct: 781 GKTISLEASTASLMLSLFSRKGK 803



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 97/196 (49%), Gaps = 6/196 (3%)

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI-LVFEEMVGKGYMPNSTTYNVVIRGL 357
           +F   +  G+   V   N +++ LC     ++A+ ++   M   G  P++ +Y+ V++ L
Sbjct: 141 LFGRFLKTGLKTDVIVANILLKCLCHAKRSDDAVNVLLHRMPELGVEPDTISYSTVLKSL 200

Query: 358 CHTGEMERALEFVGRM--KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
           C     +RAL+ +  M  K   C PNV +YN +I  F   GE+ +   LF +M     +P
Sbjct: 201 CEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVP 260

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
           ++ TY+  I ++   +  D    A  +L +M+  GF P K T+N +++G  ++G      
Sbjct: 261 DVVTYSSYIDALCKARAMDK---AELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKETA 317

Query: 476 EILRLQSRCGRLPRQF 491
            + R  +R G +P  F
Sbjct: 318 GMFREMTRRGLMPDIF 333


>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
 gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
          Length = 939

 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 121/460 (26%), Positives = 203/460 (44%), Gaps = 55/460 (11%)

Query: 68  TPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWT--- 124
           TP L+   ++R+      ALH F +    P+   S +   H +  A R  D R + +   
Sbjct: 69  TPALLQAALRRVRLDPDAALHLFRLAPSRPSLV-SHAQLLHILARARRFHDARALLSSLP 127

Query: 125 ---------LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS 175
                    L    +  +      +F ++   +  AG+   A+ +F  M + GCR SL S
Sbjct: 128 PHAEPLFPHLAEVYRDFTFSAV--SFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRS 185

Query: 176 FNTILDLL-----------------------------------CKEKKVEKAYNLFKVFR 200
            N +L+ L                                   C++ +V +A    +   
Sbjct: 186 CNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEME 245

Query: 201 G-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
           G   + ++++Y+ + + +C +  T  A  +L+ +  +GL+PN+ TY +++KGY + G++E
Sbjct: 246 GMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRME 305

Query: 260 EAWRFFLEMKKR-KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           EA R   EMK+     +D V Y  +++G+   G +  A  V + M + G+  ++  YN M
Sbjct: 306 EAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTM 365

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           I  LCK   +E    V +EM   G  P+  +YN +I G C  G M +A E    M  +  
Sbjct: 366 INGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGL 425

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
                TYN L++ FC    I+  L L+  M      PN  + + L+  +F   K++  L 
Sbjct: 426 AATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQAL- 484

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
              L  E + RG      TFN V+NGL  IG    A+E+L
Sbjct: 485 --NLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELL 522



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/407 (25%), Positives = 176/407 (43%), Gaps = 42/407 (10%)

Query: 103 PSSFDHAIDLAARLRDYRTVWTL--VHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P  F  AI   A  RD R    +  V  M+ + L      +  + + Y   G  + A +I
Sbjct: 216 PDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRI 275

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR--GKFKADVISYNVIANGWC 218
             S+   G   ++ ++  ++   CK+ ++E+A  + K  +  G    D ++Y ++ NG+C
Sbjct: 276 LESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYC 335

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
              R + A  V  EM D G++ NL  YN ++ G  + G++EE  +   EM+      D  
Sbjct: 336 QRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKY 395

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC--------------- 323
           +Y T++ G+   G +++A  +   MV  G+  +  TYN +++  C               
Sbjct: 396 SYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLM 455

Query: 324 --------------------KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
                               K    E A+ +++E + +G   N  T+N VI GLC  G M
Sbjct: 456 LKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRM 515

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             A E + RMK+  C P+  TY  L   +C  G++     L  KM      P+++ +N  
Sbjct: 516 AEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSF 575

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
           I+  F+ K+   +     +  EM  RG  P   T+  ++ G    GN
Sbjct: 576 ITGHFIAKQWHKV---NDIHSEMSARGLSPNLVTYGALIAGWCKEGN 619



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 101/399 (25%), Positives = 182/399 (45%), Gaps = 12/399 (3%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           A H  N +  H  +A S   F+  I      + +  V  +   M +  L P   T+  + 
Sbjct: 553 ATHLMNKME-HLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALI 611

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA 205
             +   G    A  ++  M  +G   ++   + ++    KE KV++A NL  V +     
Sbjct: 612 AGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEA-NL--VLQKLVNI 668

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           D+I    I+         +K   V+  + D   +     +N+++ G  ++G+I +A   F
Sbjct: 669 DMIPGCSIS-----TIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLF 723

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
             ++ ++   D  TY++++HG    G I  A ++ D M++ G+ P++ TYN++I  LCK 
Sbjct: 724 ESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKS 783

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
             +  A+ +F ++  KG  PN  TYN +I   C  G+   A +   +M ++  +P V TY
Sbjct: 784 GKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITY 843

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           +ILI   C  G +E  ++L ++M      PN  TY  LI       KS ++    KL  E
Sbjct: 844 SILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYI---KSGNMEEISKLYDE 900

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484
           M  RG +P  +  N   +  +++ N       ++  S+C
Sbjct: 901 MHIRGLLPTNWIGNWKRSDPVVVNNWNRKDGHMKTYSQC 939



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 107/435 (24%), Positives = 190/435 (43%), Gaps = 77/435 (17%)

Query: 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH 167
           HAID A RL      W L   M    + P + + + + +    AGK ++A+ ++      
Sbjct: 443 HAIDDALRL------WFL---MLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLAR 493

Query: 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKA 226
           G  +++ +FNT+++ LCK  ++ +A  L    +  +   D ++Y  + +G+C + +   A
Sbjct: 494 GLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTA 553

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
             ++ +M   G  P++  +N  + G+F A Q  +      EM  R    ++VTY  ++ G
Sbjct: 554 THLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAG 613

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
           +   G +  A N++  MVN G+ P+V   +A++    K+  V+ A LV +++V    +P 
Sbjct: 614 WCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPG 673

Query: 347 STT--------------------------YNVVIRGLCHTGEMERALEFVGRMKD----- 375
            +                           +NV+I GLC +G +  A      +++     
Sbjct: 674 CSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLP 733

Query: 376 ------------------DEC------------EPNVQTYNILIRYFCDAGEIERGLELF 405
                             DE              PN+ TYN LI   C +G++ R + LF
Sbjct: 734 DNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLF 793

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            K+ S    PN  TYN LI       K+ +   A KL  +MV+ G  P   T++ ++ GL
Sbjct: 794 NKLQSKGISPNGITYNTLIDEYCKEGKTTE---AFKLKQKMVEEGIQPTVITYSILIYGL 850

Query: 466 LLIGNQGLAKEILRL 480
                QG  +E ++L
Sbjct: 851 C---TQGYMEEAIKL 862



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 140/299 (46%), Gaps = 3/299 (1%)

Query: 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISY 210
           G+ +   K+   M + G R    S+NT++D  C+E  + KA+ + ++  R    A  ++Y
Sbjct: 373 GRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTY 432

Query: 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
           N +  G+C +   + AL +   M+ RG+ PN  + + +L G F+AG+ E+A   + E   
Sbjct: 433 NTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLA 492

Query: 271 RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
           R    +V+T+ T+++G   +G +  A  + D M      P   TY  +    CK   +  
Sbjct: 493 RGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGT 552

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           A  +  +M   G+ P+   +N  I G     +  +  +    M      PN+ TY  LI 
Sbjct: 553 ATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIA 612

Query: 391 YFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL-LVAGKLL-IEMV 447
            +C  G +     L+ +M +    PN+   + L+S  +   K D+  LV  KL+ I+M+
Sbjct: 613 GWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMI 671



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 133/293 (45%), Gaps = 5/293 (1%)

Query: 194 NLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
           +L +V+R  F    +S++++        + + AL V   M   G  P+L + N +L    
Sbjct: 136 HLAEVYR-DFTFSAVSFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLV 194

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
           ++G    A   + +M+      D  T   +   +   G + +A    + M   G+  ++ 
Sbjct: 195 QSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLV 254

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
            Y+A++   C     E+A  + E +  KG  PN  TY ++++G C  G ME A   V  M
Sbjct: 255 AYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEM 314

Query: 374 KD-DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           K+  +   +   Y ++I  +C  G ++    +  +M       NL  YN +I+ +    +
Sbjct: 315 KETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGR 374

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
            +++    K+L EM D G  P K+++N +++G    G+   A E+ R+  R G
Sbjct: 375 MEEV---QKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNG 424



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 117/259 (45%), Gaps = 4/259 (1%)

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           V R    +  +++++L+ +  AGQ+  A   F  M K  C   + +   +++     G+ 
Sbjct: 140 VYRDFTFSAVSFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDP 199

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
             A  V+  M   GVLP   T   M +  C+   V  A+   EEM G G   N   Y+ V
Sbjct: 200 GMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAV 259

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG-SGV 412
           +   C  G  E A   +  ++     PNV TY +L++ +C  G +E    + ++M  +G 
Sbjct: 260 MDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGD 319

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
            + +   Y ++I+    R + DD   A ++  EM D G     F +N ++NGL  +G   
Sbjct: 320 IVVDEVAYGMMINGYCQRGRMDD---ATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRME 376

Query: 473 LAKEILRLQSRCGRLPRQF 491
             +++L+     G  P ++
Sbjct: 377 EVQKVLQEMEDVGMRPDKY 395


>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
 gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
          Length = 367

 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 102/340 (30%), Positives = 173/340 (50%), Gaps = 4/340 (1%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKV 198
           T+  +   Y   G  + A +I  SM + G + SL ++N I++ LCK+ +  +A   L ++
Sbjct: 3   TYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEM 62

Query: 199 FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
                  D  +YN +    C     ++A E+  EM+ +G+ P+L +++ ++  + R   +
Sbjct: 63  LNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHL 122

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           ++A  +F +MKK     D V YT ++HG+   G +  A  + D M+  G +  V  YN +
Sbjct: 123 DQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTI 182

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           +  LCK+  + +A  +F+EMV +G +P+  T+  +I G C  G M +AL   G M     
Sbjct: 183 LNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNI 242

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
           +P++  YN LI  FC  GE+E+  EL++ M S    PN  TY ILI++        +   
Sbjct: 243 KPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSE--- 299

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           A +L   M+++G  P   T N V+ G    G+   A E L
Sbjct: 300 AFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFL 339



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 160/342 (46%), Gaps = 4/342 (1%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           + +++ M    L P+  T+  I       G+  RA  I + M   G      ++NT+L  
Sbjct: 21  FEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVE 80

Query: 183 LCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
            C+     +A  +F ++ R     D++S++ +   +   +  ++AL   ++M   GL P+
Sbjct: 81  SCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQALVYFRDMKKFGLVPD 140

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
              Y +++ GY R G + EA +   EM ++ C +DV+ Y TI++G      +  A  +FD
Sbjct: 141 NVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFD 200

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            MV  G LP   T+  +I   C+  ++  A+ +F  M  +   P+   YN +I G C  G
Sbjct: 201 EMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVG 260

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
           EME+A E    M   +  PN  TY ILI  +C  G +     L++ M      P L T N
Sbjct: 261 EMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCN 320

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
            +I       +S D   A + L  M+ +G  P   ++N ++N
Sbjct: 321 TVIKGYC---RSGDSSKADEFLGRMIAKGVAPDHISYNTLIN 359



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 119/252 (47%), Gaps = 3/252 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           SF   + + +R R           MK   L P    + ++   Y   G    A+KI   M
Sbjct: 108 SFSSLMAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEM 167

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKR 222
            E GC   + ++NTIL+ LCKEK +  A  LF   V RG    D  ++  + +G C    
Sbjct: 168 LEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGAL-PDFYTFTTLIHGHCQDGN 226

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
             KAL +   M  R + P++  YN ++ G+ + G++E+A   +  M  RK   + +TY  
Sbjct: 227 MTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGI 286

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           +++ +  VG +  A  ++D M+  G+ P++ T N +I+  C+      A      M+ KG
Sbjct: 287 LINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKG 346

Query: 343 YMPNSTTYNVVI 354
             P+  +YN +I
Sbjct: 347 VAPDHISYNTLI 358



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 126/271 (46%), Gaps = 3/271 (1%)

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           +++YN +   +C      +A E++  M D+GL P+L TYN ++ G  + G+   A    +
Sbjct: 1   MVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILI 60

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           EM       D  TY T++           A+ +F  M+  GV+P + ++++++ V  +  
Sbjct: 61  EMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNR 120

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            ++ A++ F +M   G +P++  Y V++ G C  G M  AL+    M +  C  +V  YN
Sbjct: 121 HLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYN 180

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            ++   C    +    +LF++M     LP+  T+  LI       +  ++  A  L   M
Sbjct: 181 TILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHG---HCQDGNMTKALSLFGTM 237

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
             R   P    +N +++G   +G    A E+
Sbjct: 238 TQRNIKPDIVAYNTLIDGFCKVGEMEKASEL 268



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 3/105 (2%)

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
           TYN LI  +C  G +E   E+   M      P+L TYN +I+ +    K      A  +L
Sbjct: 3   TYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLC---KKGRYARAKGIL 59

Query: 444 IEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           IEM++ G  P   T+N +L       N   AKEI     R G +P
Sbjct: 60  IEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVP 104


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 91/268 (33%), Positives = 142/268 (52%), Gaps = 6/268 (2%)

Query: 195 LFKVFRGKFKADVISYNVIANGWCLVKRTNKALE-VLKEMVDRGLNPNLTTYNIVLKGYF 253
           L  V +  F+ D I++  +  G C  KRT+ A++ VL+ M   G  PN+ +YNI+LKG  
Sbjct: 114 LGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLC 173

Query: 254 RAGQIEEAWRFFLEMKKR--KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
              + +EA      M      C  DVV+YTT+++GF   G++ +A   +  M++ G+LP+
Sbjct: 174 DENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPN 233

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
           V TYN++I  LCK  +++ A+ V   MV  G MPN  TYN ++ G C +G+ + A+ F+ 
Sbjct: 234 VVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLK 293

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
           +M  D  EP+V TYN L+ Y C  G      ++F+ M      P + TY  L+     + 
Sbjct: 294 KMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKG 353

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
               L+    LL  MV  G  P  + F+
Sbjct: 354 A---LVEMHGLLDLMVRNGIHPNHYVFS 378



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 181/380 (47%), Gaps = 6/380 (1%)

Query: 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG--C 169
           L A  R    +  ++ RM  L   P   ++ I+ +      ++  A+++   M + G  C
Sbjct: 136 LCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDC 195

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
              + S+ T+++   KE  ++KAY  + ++       +V++YN I    C  +  +KA+E
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAME 255

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           VL  MV  G+ PN  TYN ++ GY  +GQ +EA  F  +M     E DVVTY +++    
Sbjct: 256 VLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLC 315

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G    AR +FD M   G+ P + TY  ++Q    K ++     + + MV  G  PN  
Sbjct: 316 KNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHY 375

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            ++++I      G++++A+    +M+     P+  TY  +I   C +G +E  +  FE+M
Sbjct: 376 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM 435

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
                 P    YN LI S+ +  K D    A +L++EM+DRG       FN +++     
Sbjct: 436 IDERLSPGNIVYNSLIHSLCIFDKWDK---AKELILEMLDRGICLDTIFFNSIIDSHCKE 492

Query: 469 GNQGLAKEILRLQSRCGRLP 488
           G    ++++  L  R G  P
Sbjct: 493 GRVIESEKLFDLMVRIGVKP 512



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 180/386 (46%), Gaps = 43/386 (11%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P  +T+  I   Y S+G+   A+     MH  G    + ++N+++D LCK  +  +A  +
Sbjct: 267 PNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKM 326

Query: 196 FKVFRGK-FKADVISYNVIANGWC----LVK----------------------------- 221
           F     +  K ++ +Y  +  G+     LV+                             
Sbjct: 327 FDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAK 386

Query: 222 --RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
             + ++A+ V  +M  +GLNP+  TY  V+    ++G++E+A R+F +M   +     + 
Sbjct: 387 QGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIV 446

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y +++H   +  +  +A+ +   M++ G+      +N++I   CK+  V  +  +F+ MV
Sbjct: 447 YNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMV 506

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             G  PN  TY+ +I G C  G+M+ A + +  M     +P+  TYN LI  +C    +E
Sbjct: 507 RIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRME 566

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
             L LF +M S    P++ TYNI++  +F  +++     A +L + + + G      T+N
Sbjct: 567 DALVLFREMESSGVSPDIITYNIILQGLFQTRRT---AAAKELYVGITESGTQLELSTYN 623

Query: 460 RVLNGLLLIGNQGLAKEILRL-QSRC 484
            +L+GL       L  E LR+ Q+ C
Sbjct: 624 IILHGLC---KNNLTDEALRMFQNLC 646



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 160/344 (46%), Gaps = 7/344 (2%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           +  + R  +  + P   T+ I+      AG+ D       ++ + G R    +F  +L  
Sbjct: 76  YNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKG 135

Query: 183 LCKEKKVEKAYNLF--KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN- 239
           LC +K+   A ++   ++ +     +V SYN++  G C   R+ +ALE+L+ M D G + 
Sbjct: 136 LCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDC 195

Query: 240 -PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
            P++ +Y  V+ G+F+ G +++A+  + EM  R    +VVTY +I+        + +A  
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAME 255

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
           V   MV  GV+P+  TYN+++   C     + AI   ++M   G  P+  TYN ++  LC
Sbjct: 256 VLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLC 315

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLD 418
             G    A +    M     +P + TY  L++ +   G +     L + M      PN  
Sbjct: 316 KNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHY 375

Query: 419 TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
            ++ILI +   + K D  ++   +  +M  +G  P   T+  V+
Sbjct: 376 VFSILICAYAKQGKVDQAML---VFSKMRQQGLNPDTVTYGTVI 416



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 150/300 (50%), Gaps = 4/300 (1%)

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYN 211
           K D+A ++ L M + G       FN+I+D  CKE +V ++  LF +  R   K ++I+Y+
Sbjct: 459 KWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYS 518

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
            + +G+CL  + ++A ++L  MV  G+ P+  TYN ++ GY +  ++E+A   F EM+  
Sbjct: 519 TLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESS 578

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
               D++TY  I+ G         A+ ++ G+   G    ++TYN ++  LCK +  + A
Sbjct: 579 GVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEA 638

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
           + +F+ +        + T+N++I  L   G  + A +    +  +   P+V+TY+++   
Sbjct: 639 LRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAEN 698

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
             + G +E   +LF  M    C  N    N ++  +  R    D+  AG  L  + ++ F
Sbjct: 699 LIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRG---DITRAGTYLFMIDEKHF 755



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 110/244 (45%), Gaps = 8/244 (3%)

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI--DVVTYTTI 283
           A  V  E++ RG   ++   N  L    R        R+    +    E+  ++ TY  +
Sbjct: 38  ARHVFDELLRRGRGASIYGLNCALADVARHSPAAAVSRYNRMARAGADEVTPNLCTYGIL 97

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI-LVFEEMVGKG 342
           +      G +         ++  G       +  +++ LC      +A+ +V   M   G
Sbjct: 98  IGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLG 157

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD--ECEPNVQTYNILIRYFCDAGEIER 400
            +PN  +YN++++GLC     + ALE +  M DD  +C P+V +Y  +I  F   G++++
Sbjct: 158 CIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDK 217

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
               + +M     LPN+ TYN +I+++   +  D    A ++L  MV  G MP   T+N 
Sbjct: 218 AYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDK---AMEVLTSMVKNGVMPNCRTYNS 274

Query: 461 VLNG 464
           +++G
Sbjct: 275 IVHG 278


>gi|297743427|emb|CBI36294.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 113/441 (25%), Positives = 202/441 (45%), Gaps = 38/441 (8%)

Query: 39  DPAALAS---------LILTSTDPR-TLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALH 88
           DP +L+S         ++    DP   L + L   S   TP LV+Q++KR  N    A  
Sbjct: 40  DPNSLSSSQYINEISRILSDFRDPHHDLERPLTAFSQKITPGLVEQVLKRCKNLGFSA-- 97

Query: 89  FFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERY 148
                       HS   F    D  + +R+ R             + P  + F +I   Y
Sbjct: 98  ------------HSSKQFPLIWDFLSDMRETRCC----------EICP--EIFWLIFRAY 133

Query: 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVI 208
             A     A++ F  M + G +  +   + +L +LCK K V++A   F     +   +  
Sbjct: 134 CRANLPGDAIRAFHQMGDFGVKAGVGDVDQLLYVLCKRKHVKQAQEFFDKVNVEVMPNAK 193

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           +Y+++  GW  V  +++A ++ +EM +RG   ++  YN +L+   + G ++EA++ F EM
Sbjct: 194 TYSILMRGWGDVGDSSEARKLFEEMRERGCAVDVVAYNSLLEALCKGGNVDEAYKLFREM 253

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
                  D  +Y+  +  +  V +I  A  V D M    ++P+V TYN +++ LCK + V
Sbjct: 254 GSNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKV 313

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           + A  + +EM+ +G  P+  +YN +    C   E+ +AL  + RM+ + C P+  TYN++
Sbjct: 314 DEAYQLLDEMIERGVSPDLWSYNAIQAFHCDHCEVNKALRLISRMEKENCMPDRHTYNMV 373

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           ++     G  +R  +++  M      P   TY +++   F +KK   L  A K    M+D
Sbjct: 374 LKMLLRVGRFDRVTDVWGGMEERGFYPAASTYAVMVHG-FCKKKG-KLEEACKYFEMMID 431

Query: 449 RGFMPRKFTFNRVLNGLLLIG 469
            G  P   T   + N ++ +G
Sbjct: 432 DGIPPYSCTVELLRNRVIGLG 452


>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 920

 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 121/460 (26%), Positives = 203/460 (44%), Gaps = 55/460 (11%)

Query: 68  TPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWT--- 124
           TP L+   ++R+      ALH F +    P+   S +   H +  A R  D R + +   
Sbjct: 69  TPALLQAALRRVRLDPDAALHLFRLAPSRPSLV-SHAQLLHILARARRFHDARALLSSLP 127

Query: 125 ---------LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS 175
                    L    +  +      +F ++   +  AG+   A+ +F  M + GCR SL S
Sbjct: 128 PHAEPLFPHLAEVYRDFTFSAV--SFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRS 185

Query: 176 FNTILDLL-----------------------------------CKEKKVEKAYNLFKVFR 200
            N +L+ L                                   C++ +V +A    +   
Sbjct: 186 CNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEME 245

Query: 201 G-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
           G   + ++++Y+ + + +C +  T  A  +L+ +  +GL+PN+ TY +++KGY + G++E
Sbjct: 246 GMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRME 305

Query: 260 EAWRFFLEMKKR-KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           EA R   EMK+     +D V Y  +++G+   G +  A  V + M + G+  ++  YN M
Sbjct: 306 EAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTM 365

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           I  LCK   +E    V +EM   G  P+  +YN +I G C  G M +A E    M  +  
Sbjct: 366 INGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGL 425

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
                TYN L++ FC    I+  L L+  M      PN  + + L+  +F   K++  L 
Sbjct: 426 AATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQAL- 484

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
              L  E + RG      TFN V+NGL  IG    A+E+L
Sbjct: 485 --NLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELL 522



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/407 (25%), Positives = 176/407 (43%), Gaps = 42/407 (10%)

Query: 103 PSSFDHAIDLAARLRDYRTVWTL--VHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P  F  AI   A  RD R    +  V  M+ + L      +  + + Y   G  + A +I
Sbjct: 216 PDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRI 275

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR--GKFKADVISYNVIANGWC 218
             S+   G   ++ ++  ++   CK+ ++E+A  + K  +  G    D ++Y ++ NG+C
Sbjct: 276 LESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYC 335

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
              R + A  V  EM D G++ NL  YN ++ G  + G++EE  +   EM+      D  
Sbjct: 336 QRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKY 395

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC--------------- 323
           +Y T++ G+   G +++A  +   MV  G+  +  TYN +++  C               
Sbjct: 396 SYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLM 455

Query: 324 --------------------KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
                               K    E A+ +++E + +G   N  T+N VI GLC  G M
Sbjct: 456 LKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRM 515

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             A E + RMK+  C P+  TY  L   +C  G++     L  KM      P+++ +N  
Sbjct: 516 AEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSF 575

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
           I+  F+ K+   +     +  EM  RG  P   T+  ++ G    GN
Sbjct: 576 ITGHFIAKQWHKV---NDIHSEMSARGLSPNLVTYGALIAGWCKEGN 619



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/407 (25%), Positives = 179/407 (43%), Gaps = 74/407 (18%)

Query: 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH 167
           HAID A RL      W L   M    + P + + + + +    AGK ++A+ ++      
Sbjct: 443 HAIDDALRL------WFL---MLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLAR 493

Query: 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWC-------- 218
           G  +++ +FNT+++ LCK  ++ +A  L    +  +   D ++Y  + +G+C        
Sbjct: 494 GLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTA 553

Query: 219 ---------------------------LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
                                      + K+ +K  ++  EM  RGL+PNL TY  ++ G
Sbjct: 554 THLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAG 613

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP- 310
           + + G + EA   + EM       +V   + ++  F   G++  A  V   +VN  ++P 
Sbjct: 614 WCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPG 673

Query: 311 -SVAT------------------------YNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
            S++T                        +N +I  LCK   + +A  +FE +  K ++P
Sbjct: 674 CSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLP 733

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           ++ TY+ +I G   +G ++ A      M      PN+ TYN LI   C +G++ R + LF
Sbjct: 734 DNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLF 793

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
            K+ S    PN  TYN LI       K+ +   A KL  +MV+ G+M
Sbjct: 794 NKLQSKGISPNGITYNTLIDEYCKEGKTTE---AFKLKQKMVEEGYM 837



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 140/299 (46%), Gaps = 3/299 (1%)

Query: 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISY 210
           G+ +   K+   M + G R    S+NT++D  C+E  + KA+ + ++  R    A  ++Y
Sbjct: 373 GRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTY 432

Query: 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
           N +  G+C +   + AL +   M+ RG+ PN  + + +L G F+AG+ E+A   + E   
Sbjct: 433 NTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLA 492

Query: 271 RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
           R    +V+T+ T+++G   +G +  A  + D M      P   TY  +    CK   +  
Sbjct: 493 RGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGT 552

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           A  +  +M   G+ P+   +N  I G     +  +  +    M      PN+ TY  LI 
Sbjct: 553 ATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIA 612

Query: 391 YFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL-LVAGKLL-IEMV 447
            +C  G +     L+ +M +    PN+   + L+S  +   K D+  LV  KL+ I+M+
Sbjct: 613 GWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMI 671



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 107/422 (25%), Positives = 179/422 (42%), Gaps = 67/422 (15%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S++  ID   R    R  + +   M    L  T  T+  + + + S    D A++++  M
Sbjct: 396 SYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLM 455

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKR 222
            + G   +  S +T+LD L K  K E+A NL+K  + RG  K +VI++N + NG C + R
Sbjct: 456 LKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAK-NVITFNTVINGLCKIGR 514

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ------------------------- 257
             +A E+L  M +    P+  TY  +  GY + GQ                         
Sbjct: 515 MAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNS 574

Query: 258 ------IEEAWR----FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
                 I + W        EM  R    ++VTY  ++ G+   G +  A N++  MVN G
Sbjct: 575 FITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNG 634

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT------------------ 349
           + P+V   +A++    K+  V+ A LV +++V    +P  +                   
Sbjct: 635 MNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADG 694

Query: 350 --------YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
                   +NV+I GLC +G +  A      +++    P+  TY+ LI     +G I+  
Sbjct: 695 NPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEA 754

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
             L + M S    PN+ TYN LI  +    KS  L  A  L  ++  +G  P   T+N +
Sbjct: 755 FSLRDVMLSAGLTPNIITYNSLIYGLC---KSGKLSRAVNLFNKLQSKGISPNGITYNTL 811

Query: 462 LN 463
           ++
Sbjct: 812 ID 813



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 155/339 (45%), Gaps = 25/339 (7%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           A H  N +  H  +A S   F+  I      + +  V  +   M +  L P   T+  + 
Sbjct: 553 ATHLMNKME-HLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALI 611

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA 205
             +   G    A  ++  M  +G   ++   + ++    KE KV++A NL  V +     
Sbjct: 612 AGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEA-NL--VLQKLVNI 668

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           D+I    I+         +K   V+  + D   +     +N+++ G  ++G+I +A   F
Sbjct: 669 DMIPGCSIS-----TIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLF 723

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
             ++ ++   D  TY++++HG    G I  A ++ D M++ G+ P++ TYN++I  LCK 
Sbjct: 724 ESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKS 783

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE----------------MERALEF 369
             +  A+ +F ++  KG  PN  TYN +I   C  G+                ME A++ 
Sbjct: 784 GKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGYMEEAIKL 843

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           + +M ++  +PN  TY  LI  +  +G +E   +L+++M
Sbjct: 844 LDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDEM 882



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 133/293 (45%), Gaps = 5/293 (1%)

Query: 194 NLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
           +L +V+R  F    +S++++        + + AL V   M   G  P+L + N +L    
Sbjct: 136 HLAEVYR-DFTFSAVSFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLV 194

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
           ++G    A   + +M+      D  T   +   +   G + +A    + M   G+  ++ 
Sbjct: 195 QSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLV 254

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
            Y+A++   C     E+A  + E +  KG  PN  TY ++++G C  G ME A   V  M
Sbjct: 255 AYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEM 314

Query: 374 KD-DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           K+  +   +   Y ++I  +C  G ++    +  +M       NL  YN +I+ +    +
Sbjct: 315 KETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGR 374

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
            +++    K+L EM D G  P K+++N +++G    G+   A E+ R+  R G
Sbjct: 375 MEEV---QKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNG 424



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 117/259 (45%), Gaps = 4/259 (1%)

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           V R    +  +++++L+ +  AGQ+  A   F  M K  C   + +   +++     G+ 
Sbjct: 140 VYRDFTFSAVSFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDP 199

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
             A  V+  M   GVLP   T   M +  C+   V  A+   EEM G G   N   Y+ V
Sbjct: 200 GMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAV 259

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG-SGV 412
           +   C  G  E A   +  ++     PNV TY +L++ +C  G +E    + ++M  +G 
Sbjct: 260 MDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGD 319

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
            + +   Y ++I+    R + DD   A ++  EM D G     F +N ++NGL  +G   
Sbjct: 320 IVVDEVAYGMMINGYCQRGRMDD---ATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRME 376

Query: 473 LAKEILRLQSRCGRLPRQF 491
             +++L+     G  P ++
Sbjct: 377 EVQKVLQEMEDVGMRPDKY 395



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 91/193 (47%), Gaps = 17/193 (8%)

Query: 176 FNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           +N I+  LCK  ++  A +LF+  R K F  D  +Y+ + +G       ++A  +   M+
Sbjct: 703 WNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVML 762

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE-- 292
             GL PN+ TYN ++ G  ++G++  A   F +++ +    + +TY T++  +   G+  
Sbjct: 763 SAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTT 822

Query: 293 --------------IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
                         ++ A  + D M+   V P+  TY  +I    K  ++E    +++EM
Sbjct: 823 EAFKLKQKMVEEGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDEM 882

Query: 339 VGKGYMPNSTTYN 351
             +G +P +   N
Sbjct: 883 HIRGLLPTNWIGN 895



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 96/200 (48%), Gaps = 23/200 (11%)

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
           + R+ D ++++  +   + L   P   T++ +     ++G  D A  +   M   G   +
Sbjct: 713 SGRIADAKSLFESLRNKRFL---PDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPN 769

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLK 231
           + ++N+++  LCK  K+ +A NLF   + K    + I+YN + + +C   +T +A ++ +
Sbjct: 770 IITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQ 829

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
           +MV+ G                    +EEA +   +M +   + + +TY T++HG+   G
Sbjct: 830 KMVEEGY-------------------MEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSG 870

Query: 292 EIKRARNVFDGMVNGGVLPS 311
            ++    ++D M   G+LP+
Sbjct: 871 NMEEISKLYDEMHIRGLLPT 890


>gi|255585035|ref|XP_002533226.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526958|gb|EEF29158.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 606

 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 189/371 (50%), Gaps = 8/371 (2%)

Query: 104 SSFDHAIDLAARLRDYRTVWTL--VHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           +S++  +D+    R  +T  ++  ++ +    L P Q T+  I   Y   G+ ++A +  
Sbjct: 228 ASYNTILDVLWLCRSGKTDQSIDKLNELLESGLVPHQITYNTIIHGYCREGQVEKAFQFR 287

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLV 220
             M E   +  L + N +L  LC E  ++ A  LF  +  K KA D ++YN I +G C  
Sbjct: 288 NKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKE 347

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA-GQIEEAWRFFLEMKKRKCEIDVVT 279
            R  +A ++L EM ++ L P+  TYN +L     A GQ+E+A++F  +M ++  + D+ T
Sbjct: 348 GRFEEAFDLLAEMEEKKLGPDCYTYNAILCALADAEGQVEKAFQFRNKMVEKSFKPDLFT 407

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
              ++ G    G +  A  +F+  ++ G      TYN +I  LCK+   E A  +  EM 
Sbjct: 408 CNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEME 467

Query: 340 GK-GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
            K G +P+ TTYN +I G C  G++E+A +F  +M +   +P++ T NIL+R  C  G +
Sbjct: 468 EKNGLVPDQTTYNTIILGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCREGML 527

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
            + L+LF    S     +  TYN +IS +    + ++   A  LL EM ++   P  +T+
Sbjct: 528 VKALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEE---AFDLLAEMKEKKLGPDCYTY 584

Query: 459 NRVLNGLLLIG 469
           N +L  L   G
Sbjct: 585 NAILCALADAG 595



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/347 (29%), Positives = 173/347 (49%), Gaps = 25/347 (7%)

Query: 125 LVHRMKSLSLGP---TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
           + +RMK L L P   T+ T      RY S      +  IF ++ + G +   N  +  + 
Sbjct: 157 IFNRMKRLHLKPNLLTRNTLINALVRYPSKPSVCLSKAIFTNVIKFGVK---NKLSEAIG 213

Query: 182 LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG-W-CLVKRTNKALEVLKEMVDRGLN 239
           L+ K K        F  F      D  SYN I +  W C   +T+++++ L E+++ GL 
Sbjct: 214 LIGKMKD-------FSCF-----PDNASYNTILDVLWLCRSGKTDQSIDKLNELLESGLV 261

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           P+  TYN ++ GY R GQ+E+A++F  +M ++  + D+ T   ++ G    G +  A  +
Sbjct: 262 PHQITYNTIIHGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKL 321

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
           F+  ++ G      TYN +I  LCK+   E A  +  EM  K   P+  TYN ++  L  
Sbjct: 322 FNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKKLGPDCYTYNAILCALAD 381

Query: 360 T-GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLD 418
             G++E+A +F  +M +   +P++ T NIL+R  C  G ++  L+LF    S     +  
Sbjct: 382 AEGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAV 441

Query: 419 TYNILISSMFVRKKSDDLLVAGKLLIEMVDR-GFMPRKFTFNRVLNG 464
           TYN +IS +    + ++   A  LL EM ++ G +P + T+N ++ G
Sbjct: 442 TYNTIISGLCKEGRFEE---AFDLLAEMEEKNGLVPDQTTYNTIILG 485



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 142/311 (45%), Gaps = 38/311 (12%)

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186
           ++M   S  P   T  I+     + G  D A+K+F +    G      ++NTI+  LCKE
Sbjct: 288 NKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKE 347

Query: 187 KKVEKAYNLF-------------------------------------KVFRGKFKADVIS 209
            + E+A++L                                      K+    FK D+ +
Sbjct: 348 GRFEEAFDLLAEMEEKKLGPDCYTYNAILCALADAEGQVEKAFQFRNKMVEKSFKPDLFT 407

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
            N++  G C     + AL++    + +G   +  TYN ++ G  + G+ EEA+    EM+
Sbjct: 408 CNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEME 467

Query: 270 KRKCEI-DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
           ++   + D  TY TI+ G+   G++++A    + MV     P + T N +++ LC++  +
Sbjct: 468 EKNGLVPDQTTYNTIILGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCREGML 527

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
             A+ +F   + KG   ++ TYN +I GLC  G  E A + +  MK+ +  P+  TYN +
Sbjct: 528 VKALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMKEKKLGPDCYTYNAI 587

Query: 389 IRYFCDAGEIE 399
           +    DAG +E
Sbjct: 588 LCALADAGRME 598



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 143/325 (44%), Gaps = 53/325 (16%)

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADV 207
           YVS  +   A +IF  M     + +L + NT+++ L +          +        +  
Sbjct: 145 YVSCNRPHHAAQIFNRMKRLHLKPNLLTRNTLINALVR----------YPSKPSVCLSKA 194

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF--RAGQIEEAWRFF 265
           I  NVI  G  +  + ++A+ ++ +M D    P+  +YN +L   +  R+G+ +++    
Sbjct: 195 IFTNVIKFG--VKNKLSEAIGLIGKMKDFSCFPDNASYNTILDVLWLCRSGKTDQSIDKL 252

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
            E+ +       +TY TI+HG+   G++++A    + MV     P + T N +++ LC +
Sbjct: 253 NELLESGLVPHQITYNTIIHGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTE 312

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
             ++NA+ +F   + KG   ++ TYN +I GLC  G  E A + +  M++ +  P+  TY
Sbjct: 313 GMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKKLGPDCYTY 372

Query: 386 NILIRYFCDA-GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLI 444
           N ++    DA G++E+  +   KM                                    
Sbjct: 373 NAILCALADAEGQVEKAFQFRNKM------------------------------------ 396

Query: 445 EMVDRGFMPRKFTFNRVLNGLLLIG 469
             V++ F P  FT N +L GL   G
Sbjct: 397 --VEKSFKPDLFTCNILLRGLCTEG 419


>gi|414591641|tpg|DAA42212.1| TPA: hypothetical protein ZEAMMB73_141452 [Zea mays]
          Length = 472

 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 109/384 (28%), Positives = 192/384 (50%), Gaps = 17/384 (4%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER----YVSAGKADRA 157
           SP+S+ +AI +    R +R    L    + L  G   +  AIIA      +  A + D A
Sbjct: 74  SPTSYTYAILMDCCTRAHRPELALAFFGQLLRTG--LRVDAIIASHLLKGFCEAKRTDEA 131

Query: 158 VKIFL-SMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK---FKADVISYNVI 213
           + I L    E GC   + S+N +L  LC + K  +A NL ++          DV++YN +
Sbjct: 132 LDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADNLLRMMAEGGTVCSPDVVAYNTV 191

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
            +G+      NKA ++ KEMV RG+ P+L TYN V+    +A  +++A  F  +M  ++ 
Sbjct: 192 IDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRV 251

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
             +  TY  +++G+   G+ K A  VF  M    +LP V T + ++  LCK   ++ A  
Sbjct: 252 LPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARD 311

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           VF+ M  KG  P+  +YN+++ G    G +    +    M  D   P+  T+N+ I+ + 
Sbjct: 312 VFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVQIKAYA 371

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
           + G +++ + +F +M      P++ TY  +I+++    K DD   A +   +M+D+G  P
Sbjct: 372 NCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDD---AMEKFNQMIDQGVAP 428

Query: 454 RKFTFNRVLNGL----LLIGNQGL 473
            K+ +N ++ G     +L+  QG+
Sbjct: 429 DKYAYNCLIQGFCTHGILLKTQGI 452



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 119/267 (44%), Gaps = 41/267 (15%)

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF-------- 287
           R L+P   TY I++    RA + E A  FF ++ +    +D +  + ++ GF        
Sbjct: 71  RVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDE 130

Query: 288 ------------GVV----------------GEIKRARNVFDGMVNGGVL--PSVATYNA 317
                       G V                G+  +A N+   M  GG +  P V  YN 
Sbjct: 131 ALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADNLLRMMAEGGTVCSPDVVAYNT 190

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           +I    K+  V  A  +F+EMV +G  P+  TYN V+  LC    M++A  F+ +M +  
Sbjct: 191 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKR 250

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
             PN  TYN LI  +   G+ +  + +F++M     LP++ T ++L+ S+    K  +  
Sbjct: 251 VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKE-- 308

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNG 464
            A  +   M  +G  P  F++N +LNG
Sbjct: 309 -ARDVFDTMAMKGQNPDVFSYNIMLNG 334


>gi|225461528|ref|XP_002282646.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Vitis vinifera]
          Length = 546

 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 121/431 (28%), Positives = 193/431 (44%), Gaps = 17/431 (3%)

Query: 35  PAAADPAALASLILTSTDPRT--LTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNI 92
           P       + +L+ T  D     +   LH   L  T  LV  ++KR  +    A  FFN 
Sbjct: 82  PDGETALEVQNLLKTYRDSSVSEIEGALHQCRLSLTDDLVLDVLKRHRSDWRPAYVFFNW 141

Query: 93  LS---YHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149
            S       Y+      +  +D+  R+R +  +  L   M        ++TF ++  RY 
Sbjct: 142 ASRCGIESGYSPGCGVHNEILDILGRMRRFHEMTQLFDEMSKRKGLVNERTFGVLLNRYA 201

Query: 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVIS 209
           +A K + AVKIF      G    L +F T+L  LC+ K VE A  LF   + +F  D+ S
Sbjct: 202 AAHKTEEAVKIFNKRKGLGFELDLIAFQTLLMSLCRYKHVEMAEFLFHSKKNEFPPDIKS 261

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
            NVI NGWC++    +A     +++     P+  TY I +    +AG++  A + F  M 
Sbjct: 262 MNVILNGWCVLGSLREAKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQAMW 321

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
           ++ C  DV     I+        I  A  V   M      P VATYN++I+ LCK    E
Sbjct: 322 EKGCNPDVAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHLCKIQRFE 381

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
               + ++M  KG +PN+ TY  +++      E+   LE   RM+ + C  N   YN+++
Sbjct: 382 KVYELLDDMEQKGCLPNARTYGYLLKSTKKPEEVPGILE---RMERNGCRMNSDCYNLIL 438

Query: 390 RYFCDAG---EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
           + + D G   ++   L+  E+ G G   P+  TY I+I  ++ + + DD L   K +  M
Sbjct: 439 KLYMDWGYELKLRSTLDEMERNGMG---PDQRTYTIMIHGLYDKGRMDDALSYFKQMTLM 495

Query: 447 VDRGFMPRKFT 457
              G +P   T
Sbjct: 496 ---GMVPEPRT 503



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 117/255 (45%), Gaps = 4/255 (1%)

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           ++ G +P    +N +L    R  +  E  + F EM KRK  ++  T+  +++ +    + 
Sbjct: 147 IESGYSPGCGVHNEILDILGRMRRFHEMTQLFDEMSKRKGLVNERTFGVLLNRYAAAHKT 206

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           + A  +F+     G    +  +  ++  LC+   VE A  +F     + + P+  + NV+
Sbjct: 207 EEAVKIFNKRKGLGFELDLIAFQTLLMSLCRYKHVEMAEFLFHSKKNE-FPPDIKSMNVI 265

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           + G C  G +  A  F   +   +C+P+  TY I I     AG++   ++LF+ M    C
Sbjct: 266 LNGWCVLGSLREAKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQAMWEKGC 325

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGL 473
            P++   N +I ++  +K+  + L   ++L EM +R   P   T+N ++  L  I     
Sbjct: 326 NPDVAICNCIIDALCFKKRIPEAL---EVLREMNERDCQPDVATYNSLIKHLCKIQRFEK 382

Query: 474 AKEILRLQSRCGRLP 488
             E+L    + G LP
Sbjct: 383 VYELLDDMEQKGCLP 397


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 114/403 (28%), Positives = 191/403 (47%), Gaps = 32/403 (7%)

Query: 83  ALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           AL        L +HPT   + S+  H + +  R+ +      L H+M      P   TF 
Sbjct: 132 ALSTFGKITKLGFHPTVV-TFSTLLHGLCVEDRISE---ALDLFHQM----CKPNVVTFT 183

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-- 200
            +       G+   AV +   M E G + +  ++ TI+D +CK      A NL +     
Sbjct: 184 TLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEV 243

Query: 201 GKFKADVISY-----NVIANGWCLVKRTNKALEVLKEMVDRG-LNPNLTTYNIVLKGYFR 254
              K +V+ +       + NG+C   R ++A ++L+EM++R  ++P++ TYN ++  + +
Sbjct: 244 SHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVK 303

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G+  EA   + EM  R      +TY++++ GF     +  A ++F  M   G  P + T
Sbjct: 304 EGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIIT 363

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           +N +I   C+   V++ I +  EM   G + N+ TY  +I G C  G++  A + +  M 
Sbjct: 364 FNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMV 423

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG------------SGVCLPNLDTYNI 422
                PNV T N L+   CD G+++  LE+F+ M             +GV  P++ TYNI
Sbjct: 424 SSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGV-EPDVQTYNI 482

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           LIS +    K    L A +L  EM  RG +P   T+N V++GL
Sbjct: 483 LISGLINEGK---FLEAEELYEEMPHRGIVPDTITYNSVIHGL 522



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/408 (25%), Positives = 198/408 (48%), Gaps = 32/408 (7%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLS-------LGPTQKTFAIIAERYVSAGKADRA 157
           ++   +D   ++ D  +   L+ +M+ +S       + P ++   +I   + S+G+   A
Sbjct: 216 TYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTCMI-NGFCSSGRWSEA 274

Query: 158 VKIFLSMHEHGCRQSLN----SFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYN 211
            ++   M E   R+ ++    ++N +++   KE K  +A  L+     RG   +  I+Y+
Sbjct: 275 QQLLQEMLE---RKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPS-TITYS 330

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
            + +G+C   R + A  +   M  +G +P++ T+N ++ GY RA ++++  +   EM + 
Sbjct: 331 SMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEA 390

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
               + +TYTT++HGF  VG++  A+++   MV+ GV P+V T N ++  LC    +++A
Sbjct: 391 GLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDA 450

Query: 332 ILVFEEMVGK-----------GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
           + +F+ M              G  P+  TYN++I GL + G+   A E    M      P
Sbjct: 451 LEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVP 510

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAG 440
           +  TYN +I   C    ++   ++F+ MGS    PN+ T+  LI+      + DD L   
Sbjct: 511 DTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGL--- 567

Query: 441 KLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           +L  EM  RG +    T+  +++G   +GN   A +I +     G  P
Sbjct: 568 ELFCEMGRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMASGVYP 615



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 154/309 (49%), Gaps = 12/309 (3%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P+  T++ + + +    + D A  +F  M   GC   + +FNT++   C+ K+V+    L
Sbjct: 324 PSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKL 383

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             ++      A+ I+Y  + +G+C V   N A ++L+EMV  G+ PN+ T N +L G   
Sbjct: 384 LHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCD 443

Query: 255 AGQIEEAWRFFLEMKKRKCEID-----------VVTYTTIVHGFGVVGEIKRARNVFDGM 303
            G++++A   F  M+K K +ID           V TY  ++ G    G+   A  +++ M
Sbjct: 444 NGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEM 503

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            + G++P   TYN++I  LCK+  ++ A  +F+ M  K + PN  T+  +I G C  G +
Sbjct: 504 PHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRV 563

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           +  LE    M       N  TY  LI  F   G I   L++F++M +    P+  T   +
Sbjct: 564 DDGLELFCEMGRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMASGVYPDTITIRNM 623

Query: 424 ISSMFVRKK 432
           ++ ++ +++
Sbjct: 624 LTGLWSKEE 632



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 146/319 (45%), Gaps = 19/319 (5%)

Query: 63  PSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDYR 120
           PS      ++D   K+  N    A H F +++   T   SP   +F+  I    R +   
Sbjct: 324 PSTITYSSMIDGFCKQ--NRLDAAEHMFYLMA---TKGCSPDIITFNTLIAGYCRAKRVD 378

Query: 121 TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180
               L+H M    L     T+  +   +   G  + A  +   M   G   ++ + NT+L
Sbjct: 379 DGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLL 438

Query: 181 DLLCKEKKVEKAYNLFKVFR------------GKFKADVISYNVIANGWCLVKRTNKALE 228
           D LC   K++ A  +FK  +               + DV +YN++ +G     +  +A E
Sbjct: 439 DGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEE 498

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           + +EM  RG+ P+  TYN V+ G  +  +++EA + F  M  +    +VVT+TT+++G+ 
Sbjct: 499 LYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYC 558

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G +     +F  M   G++ +  TY  +I    K  ++  A+ +F+EM+  G  P++ 
Sbjct: 559 KAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMASGVYPDTI 618

Query: 349 TYNVVIRGLCHTGEMERAL 367
           T   ++ GL    E++RA+
Sbjct: 619 TIRNMLTGLWSKEELKRAV 637



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 126/293 (43%), Gaps = 49/293 (16%)

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
           +G+  +K    A+++  +MV     P++  +  ++    R G+++       +M+ R+  
Sbjct: 51  SGFHEIKGLEDAIDLFGDMVRSRPLPSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRRVP 110

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
            +  ++T ++  F    ++  A + F  +   G  P+V T++ ++  LC +D +  A+ +
Sbjct: 111 CNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDL 170

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
           F +M      PN  T+  ++ GLC  G +  A+  + RM +D  +PN  TY  ++   C 
Sbjct: 171 FHQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCK 226

Query: 395 AGEIERGLELFEKMG---------------------SGVC-------------------- 413
            G+    L L  KM                      +G C                    
Sbjct: 227 MGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKK 286

Query: 414 -LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
             P++ TYN LI++ FV  K      A +L  EM+ RG +P   T++ +++G 
Sbjct: 287 ISPDVVTYNALINA-FV--KEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGF 336



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 95/194 (48%), Gaps = 7/194 (3%)

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
           GF  +  ++ A ++F  MV    LPSV  +  ++ V+ +   ++  I +  +M  +    
Sbjct: 52  GFHEIKGLEDAIDLFGDMVRSRPLPSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRRVPC 111

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           N+ ++ ++++  C   ++  AL   G++      P V T++ L+   C    I   L+LF
Sbjct: 112 NAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDLF 171

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            +M    C PN+ T+  L++ +    +   ++ A  LL  M++ G  P + T+  +++G+
Sbjct: 172 HQM----CKPNVVTFTTLMNGLC---REGRVVEAVALLDRMLEDGLQPNQITYGTIVDGM 224

Query: 466 LLIGNQGLAKEILR 479
             +G+   A  +LR
Sbjct: 225 CKMGDTVSALNLLR 238


>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
 gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
          Length = 577

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 176/343 (51%), Gaps = 10/343 (2%)

Query: 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA------ 205
           G+ D A++ F SM E  C  ++ ++NT+++ LCK  ++++   LF     +++A      
Sbjct: 48  GRIDEALEQFKSMGEE-CSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEP 106

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           DVISY+ + +  C  +R +KA E  K M   G  PN+ TY+ ++ G  +  +++EA+   
Sbjct: 107 DVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLL 166

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
           +++K        + Y  +V+GF   G+      +   M   G   ++  +NAM+  L K 
Sbjct: 167 MQLKGEDMVPRAMYYNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKN 226

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
           D  E A   FE ++  G  PN  TYNV + GLC  G+++ A   +  M + +  P+V TY
Sbjct: 227 DEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITY 286

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           + +I  FC AG +++  ++F +M    C+P+  T+  L+      KKS +   A ++  +
Sbjct: 287 SSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSRE---AFRVHED 343

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           MV+ GF+P   T+N +++ +    +   A EI     R  R P
Sbjct: 344 MVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQP 386



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/424 (25%), Positives = 190/424 (44%), Gaps = 58/424 (13%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   ID   ++      ++L+ ++K   + P    +  +   +   GK    +++ L M
Sbjct: 145 TYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNAVVNGFKRQGKPSECLELLLHM 204

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
            E G   ++  FN +L  L K  + EKA   F ++ +   K +V++YNV  +G C   + 
Sbjct: 205 KEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGKV 264

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           ++A  +L EMV+  + P++ TY+ ++ G+ +AG++++A   F  M   +C    VT+ T+
Sbjct: 265 DEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTL 324

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +HGF    + + A  V + MVN G +P + TYN ++  +C  DSVE+A+ ++ +M  K  
Sbjct: 325 LHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKR 384

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI----- 398
            P++ TY  +I+ LC    ++ A EF+  M+ D   PN    + L+   C  GE+     
Sbjct: 385 QPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACS 444

Query: 399 --------------ERGLELFEK-----------------------------------MG 409
                         +  +E+ E+                                   M 
Sbjct: 445 VLDNVVEICKAGEPDEAVEVIEQMVLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKMA 504

Query: 410 SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
           S  C P L TY +LI        +DD   A ++   MV  GF P+  T   + + L   G
Sbjct: 505 SRGCAPGLVTYTLLIGEACSADMADD---AFRIFEAMVAAGFTPQAQTMRTLSSCLRDAG 561

Query: 470 NQGL 473
            Q L
Sbjct: 562 YQDL 565



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 180/382 (47%), Gaps = 52/382 (13%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   +++ + +    A + D+A + F  M   GC  ++ ++++++D LCK  +V++AY+L
Sbjct: 106 PDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSL 165

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN--------------- 239
               +G+      + YN + NG+    + ++ LE+L  M ++G                 
Sbjct: 166 LMQLKGEDMVPRAMYYNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWK 225

Query: 240 --------------------PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
                               PN+ TYN+ + G  +AG+++EA+R  LEM + K   DV+T
Sbjct: 226 NDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVIT 285

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y++I+ GF   G + +A +VF  M+    +P   T+  ++    +      A  V E+MV
Sbjct: 286 YSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMV 345

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             G++P   TYNV++  +C    +E ALE   +MK  + +P+  TY  LI+  C A  ++
Sbjct: 346 NAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVD 405

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD----------DLLVAG------KLL 443
              E  + M +   +PN    + L+  +  + + D          ++  AG      +++
Sbjct: 406 EAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEICKAGEPDEAVEVI 465

Query: 444 IEMVDRGFMPRKFTFNRVLNGL 465
            +MV +G  P + T+  VL  L
Sbjct: 466 EQMVLKGVRPDEATYVAVLRSL 487



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 153/328 (46%), Gaps = 21/328 (6%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+ +       AGK D A +I L M E      + ++++I+D  CK  +++KA ++
Sbjct: 246 PNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDV 305

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F ++   +     +++  + +G+   K++ +A  V ++MV+ G  P L TYN+++     
Sbjct: 306 FTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCG 365

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
           A  +E A   + +MK++K + D  TY  ++        +  A+   D M    V+P+ A 
Sbjct: 366 ADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAI 425

Query: 315 YNAMIQVLCKKDSVENA-------------------ILVFEEMVGKGYMPNSTTYNVVIR 355
            +A+++VLCK+  V+ A                   + V E+MV KG  P+  TY  V+R
Sbjct: 426 CHALVEVLCKQGEVDEACSVLDNVVEICKAGEPDEAVEVIEQMVLKGVRPDEATYVAVLR 485

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
            LC    ++ A+    +M    C P + TY +LI   C A   +    +FE M +    P
Sbjct: 486 SLCGLDRVDSAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADDAFRIFEAMVAAGFTP 545

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLL 443
              T   L SS        DLLV  +++
Sbjct: 546 QAQTMRTL-SSCLRDAGYQDLLVRQRIM 572


>gi|297828902|ref|XP_002882333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328173|gb|EFH58592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 506

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 124/467 (26%), Positives = 211/467 (45%), Gaps = 18/467 (3%)

Query: 3   ALLR-KPPKNHLHFFCIY-RGLSPLTTTSPAPLPPAAADPAALASLILTSTDP------- 53
            LLR KP  + +  F  + + LS  T +   PL  ++        ++    D        
Sbjct: 12  TLLRLKPSSSSIAIFSTFIKNLS--TASEQLPLDESSQSEEIWNVIVGRDGDRDSEDDVF 69

Query: 54  RTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLA 113
           + L+    C  ++ +  LV +++ R  +    AL   N       + HS  ++D A+D+ 
Sbjct: 70  KRLSNDEICNRVNLSDGLVYKLLHRFRDDWKSALGVLNWAESCKGHKHSNDAYDMAVDIL 129

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            + + +  +   V RM+   L  T  T A I  R+  AG+ + AV IF  + E G  ++ 
Sbjct: 130 GKAKKWDRLKVFVERMRGDKL-VTLNTIAKIMRRFAGAGEWEEAVGIFDKLGEFGLEKNT 188

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
            S N +LD LCKEK+VE+A  +    +     +  ++N+  +GWC   R  +AL  ++EM
Sbjct: 189 ESMNLLLDTLCKEKRVEQARVVLLELKSHITPNAHTFNIFIHGWCKANRVEEALWTIQEM 248

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
              G  P + +Y  +++ Y +  +  + +    EM+      + +TYTTI+       E 
Sbjct: 249 KGHGFRPCVISYTTIIRCYCQQSEFVKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEF 308

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE-EMVGKGYMPNSTTYNV 352
           + A  V   M   G  P    YN +I  L +   +E A  VF  EM   G   N++TYN 
Sbjct: 309 EEALRVATRMKRSGCQPDSLFYNCLIHTLARSGRLEEAERVFRVEMPELGVSINTSTYNS 368

Query: 353 VIRGLCHTGEMERALEFVGRMKDDE-CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
           +I   CH  E ++A+E +  M+    C P+V TY  L+R     G++    +L ++M + 
Sbjct: 369 MIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTK 428

Query: 412 VCLP-NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
             L  +  TY  LI  +    +++    A  L  EM+ +   PR  T
Sbjct: 429 HHLSLDESTYTFLIQRLC---RANICEWAYCLFEEMISQDITPRHRT 472


>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 686

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 101/372 (27%), Positives = 192/372 (51%), Gaps = 6/372 (1%)

Query: 103 PSSFDHAI--DLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P  F ++I  D  +R  D +T+ +L        +     T +I+       GK  +A ++
Sbjct: 291 PDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEV 350

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF-KADVISYNVIANGWCL 219
             ++   G  Q+   +NT+++  C+   +E A+++F+  + +  + D I+YN + NG   
Sbjct: 351 LQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGK 410

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
           V+R  +A +++ EM   G+NP++ T+N ++  Y RAGQ+E+ +    +M+++  + +VV+
Sbjct: 411 VERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVS 470

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y +IV+ F   G+I  A  + D M    VLP    YNA+I    +  S + A ++ E+M 
Sbjct: 471 YGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMK 530

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             G  P+  TYN++I+GLC   ++  A E +  +++    P+V +YN LI   C     +
Sbjct: 531 SSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTD 590

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
           R LEL ++M      P+  TY +L SS+    +  ++     L  +M+D+  +P    +N
Sbjct: 591 RALELEKEMWKCGIKPSPRTYRMLFSSLGGAGRVHEM---ENLYQQMLDKDVVPCSGIYN 647

Query: 460 RVLNGLLLIGNQ 471
            +++     G +
Sbjct: 648 IMVDAYAKCGEE 659



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/435 (24%), Positives = 194/435 (44%), Gaps = 45/435 (10%)

Query: 100 AHSPSSFDHAIDLAARLR---DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADR 156
           A +P++F + + +A   +   D   V  L   M   ++ P   T+  + + ++  G  + 
Sbjct: 183 APAPNAFSYNVVIAGLWKAGTDCDAV-KLFDEMPEKAVVPNHITYNTMIDGHIKKGDLES 241

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV-EKAYNLFKVFRGKFKADVISY----- 210
             +++  M  HG + ++ ++N +L  LC+  ++ E A  L ++   K   D  +Y     
Sbjct: 242 GFRLWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFD 301

Query: 211 ------------------------------NVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
                                         +++ NG C   + +KA EVL+ +V+ GL  
Sbjct: 302 GHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQ 361

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
               YN ++ GY + G +E A+  F +MK R    D +TY  +++G G V  I  A ++ 
Sbjct: 362 TTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLV 421

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
             M   GV PSV T+N +I    +   +E   ++  +M  KG  PN  +Y  ++   C  
Sbjct: 422 IEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKN 481

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
           G++  A+  +  M   +  P  Q YN +I  + + G  ++   L EKM S    P++ TY
Sbjct: 482 GKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTY 541

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           N+LI  +    K   +  A +LL  + + G  P   ++N +++      N   A E+ + 
Sbjct: 542 NLLIKGLC---KQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEKE 598

Query: 481 QSRCG--RLPRQFKL 493
             +CG    PR +++
Sbjct: 599 MWKCGIKPSPRTYRM 613



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 106/235 (45%), Gaps = 7/235 (2%)

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM-VNGGVLPSV 312
           R   +  A+   +  + R    D  T+   V    V G++  A  +   M  +G   P+ 
Sbjct: 132 RHADVRGAFELLVAARARP---DTFTWNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPNA 188

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            +YN +I  L K  +  +A+ +F+EM  K  +PN  TYN +I G    G++E       +
Sbjct: 189 FSYNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQ 248

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           M     +PNV TYN+L+   C AG +     + ++M S   +P+  TY+IL         
Sbjct: 249 MLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGD 308

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
           S  +L    L  E V +G     +T + +LNGL   G    A+E+L+     G L
Sbjct: 309 SQTML---SLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLL 360



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 75/186 (40%), Gaps = 38/186 (20%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P  + +  I + Y+  G  D+A  +   M   G   S+ ++N ++  LCK+ ++ +A  L
Sbjct: 501 PGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEEL 560

Query: 196 FKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY--------- 245
               R      DVISYN + +  C    T++ALE+ KEM   G+ P+  TY         
Sbjct: 561 LDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEKEMWKCGIKPSPRTYRMLFSSLGG 620

Query: 246 --------------------------NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
                                     NI++  Y + G+  +      EM  +   I V  
Sbjct: 621 AGRVHEMENLYQQMLDKDVVPCSGIYNIMVDAYAKCGEESKVEALRKEMSDKG--IAVGD 678

Query: 280 YTTIVH 285
           YT++ +
Sbjct: 679 YTSMTN 684


>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 97/375 (25%), Positives = 187/375 (49%), Gaps = 9/375 (2%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177
           D  T   L++ M    + P    ++ +   Y   G+ +   K+F  M   G    +  + 
Sbjct: 144 DVDTAVELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYT 203

Query: 178 TILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235
            ++D LC+  KV+KA  +  +   RG  + +V++YNV+ N  C      +AL++ K M +
Sbjct: 204 ALIDSLCRHGKVKKAARVMDMMTERG-LEPNVVTYNVLINSMCKEGSVREALDLRKNMSE 262

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI--DVVTYTTIVHGFGVVGEI 293
           +G+ P++ TYN ++ G     +++EA     EM + +  +  D++T+ +++HG   +G +
Sbjct: 263 KGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWM 322

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           ++A  V   M   G   ++  +N +I  L +   V+ A+ + +EM   G  P+S TY+++
Sbjct: 323 RQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSIL 382

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           I G C   ++ERA  ++  M+    EP    Y  L++  CD G + +  +LF +M    C
Sbjct: 383 INGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQGMMGQARDLFNEMDRN-C 441

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGL 473
             +   Y+ +I   F   KS +  +A + L +M+D G +P   T++  +N     G+   
Sbjct: 442 KLDAAAYSTMIHGAF---KSGEKKIAEEFLKDMIDEGLIPDAVTYSIPINMFAKSGDLAA 498

Query: 474 AKEILRLQSRCGRLP 488
           A+ +L+  +  G +P
Sbjct: 499 AERVLKQMTASGFVP 513



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 156/323 (48%), Gaps = 9/323 (2%)

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVF----RGKFKADVISYNVIANGWCLVKRTNKALEVL 230
           S+NT+L  LC++  ++ A  L +V     R   + + ISY  +    C  +R  +A+ +L
Sbjct: 58  SYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQAVGLL 117

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
           + M D G+ P++ TY  +++G   A  ++ A     EM +   E +VV Y+ ++HG+   
Sbjct: 118 RSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGYCKT 177

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           G  +    VF+ M   G+ P V  Y A+I  LC+   V+ A  V + M  +G  PN  TY
Sbjct: 178 GRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTY 237

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-- 408
           NV+I  +C  G +  AL+    M +   +P+V TYN LI       E++  + L E+M  
Sbjct: 238 NVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQ 297

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
           G     P+L T+N +I  +    K   +  A ++   M + G       FN ++ GLL +
Sbjct: 298 GETRVRPDLMTFNSVIHGLC---KIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRV 354

Query: 469 GNQGLAKEILRLQSRCGRLPRQF 491
                A E++   +  G  P  F
Sbjct: 355 HKVKKAMELMDEMASSGLQPDSF 377



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 161/356 (45%), Gaps = 37/356 (10%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           + +V  +   M    + P    +  + +     GK  +A ++   M E G   ++ ++N 
Sbjct: 180 WESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNV 239

Query: 179 ILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMV--D 235
           +++ +CKE  V +A +L K    K  + DV++YN +  G   V   ++A+ +L+EM+  +
Sbjct: 240 LINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGE 299

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
             + P+L T+N V+ G  + G + +A +    M +  C  ++V +  ++ G   V ++K+
Sbjct: 300 TRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKK 359

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
           A  + D M + G+ P   TY+ +I   CK   VE A     EM  +G  P    Y  +++
Sbjct: 360 AMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLK 419

Query: 356 GLCHTG----------EMER------------------------ALEFVGRMKDDECEPN 381
            +C  G          EM+R                        A EF+  M D+   P+
Sbjct: 420 AMCDQGMMGQARDLFNEMDRNCKLDAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGLIPD 479

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
             TY+I I  F  +G++     + ++M +   +P++  ++ LI     +  ++ +L
Sbjct: 480 AVTYSIPINMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQGYGAKGDTEKIL 535



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 125/250 (50%), Gaps = 4/250 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   TF  +       G   +A+++   M E+GCR +L +FN ++  L +  KV+KA  L
Sbjct: 304 PDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMEL 363

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             ++     + D  +Y+++ NG+C +++  +A   L EM  +G+ P    Y  +LK    
Sbjct: 364 MDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCD 423

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G + +A   F EM  R C++D   Y+T++HG    GE K A      M++ G++P   T
Sbjct: 424 QGMMGQARDLFNEMD-RNCKLDAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGLIPDAVT 482

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM- 373
           Y+  I +  K   +  A  V ++M   G++P+   ++ +I+G    G+ E+ LE    M 
Sbjct: 483 YSIPINMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQGYGAKGDTEKILELTREMT 542

Query: 374 -KDDECEPNV 382
            KD   +P +
Sbjct: 543 AKDVALDPKI 552



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 140/292 (47%), Gaps = 4/292 (1%)

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH--EHGCRQSLNSFN 177
           R    L   M    + P   T+  +     S  + D A+ +   M   E   R  L +FN
Sbjct: 251 REALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFN 310

Query: 178 TILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
           +++  LCK   + +A  +  +      + +++++N++  G   V +  KA+E++ EM   
Sbjct: 311 SVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASS 370

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           GL P+  TY+I++ G+ +  Q+E A  +  EM+ +  E + V Y  ++      G + +A
Sbjct: 371 GLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQGMMGQA 430

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
           R++F+ M     L   A Y+ MI    K    + A    ++M+ +G +P++ TY++ I  
Sbjct: 431 RDLFNEMDRNCKL-DAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGLIPDAVTYSIPINM 489

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
              +G++  A   + +M      P+V  ++ LI+ +   G+ E+ LEL  +M
Sbjct: 490 FAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQGYGAKGDTEKILELTREM 541



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 80/181 (44%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           R+   +    L+  M S  L P   T++I+   +    + +RA      M   G      
Sbjct: 353 RVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEPV 412

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
            +  +L  +C +  + +A +LF       K D  +Y+ + +G         A E LK+M+
Sbjct: 413 HYIPLLKAMCDQGMMGQARDLFNEMDRNCKLDAAAYSTMIHGAFKSGEKKIAEEFLKDMI 472

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
           D GL P+  TY+I +  + ++G +  A R   +M       DV  + +++ G+G  G+ +
Sbjct: 473 DEGLIPDAVTYSIPINMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQGYGAKGDTE 532

Query: 295 R 295
           +
Sbjct: 533 K 533



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 70/181 (38%), Gaps = 41/181 (22%)

Query: 346 NSTTYNVVIRGLCHTGEME-----------------------------------RALEFV 370
           ++ +YN V+  LC  G ++                                   RA + V
Sbjct: 55  DAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQAV 114

Query: 371 G---RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           G    M+D    P+V TY  LIR  CDA +++  +EL  +M      PN+  Y+ L+   
Sbjct: 115 GLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGY 174

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
               + + +   GK+  EM  RG  P    +  +++ L   G    A  ++ + +  G  
Sbjct: 175 CKTGRWESV---GKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLE 231

Query: 488 P 488
           P
Sbjct: 232 P 232


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 90/268 (33%), Positives = 142/268 (52%), Gaps = 6/268 (2%)

Query: 195 LFKVFRGKFKADVISYNVIANGWCLVKRTNKALE-VLKEMVDRGLNPNLTTYNIVLKGYF 253
           L  V +  F+ D I++  +  G C  KRT+ A++ VL+ M   G  PN+ +YNI+LKG  
Sbjct: 114 LGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLC 173

Query: 254 RAGQIEEAWRFFLEMKKR--KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
              + +EA      M      C  DVV+YTT+++GF   G++ +A   +  M++ G+LP+
Sbjct: 174 DENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPN 233

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
           V TY+++I  LCK  +++ A+ V   MV  G MPN  TYN ++ G C +G+ + A+ F+ 
Sbjct: 234 VVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLK 293

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
           +M  D  EP+V TYN L+ Y C  G      ++F+ M      P + TY  L+     + 
Sbjct: 294 KMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKG 353

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
               L+    LL  MV  G  P  + F+
Sbjct: 354 A---LVEMHGLLDLMVRNGIHPNHYVFS 378



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 173/339 (51%), Gaps = 12/339 (3%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P    F+I+   Y   GK D+A+ +F  M + G      ++ T++ +LCK  +VE A   
Sbjct: 372 PNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRY 431

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F ++   +     I YN + +  C+  + +KA E++ EM+DRG+  +   +N ++  + +
Sbjct: 432 FEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCK 491

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G++ E+ + F  M +   + D++TY+T++ G+ + G++  A  +   MV+ G+ P   T
Sbjct: 492 EGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVT 551

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN +I   CK   +E+A+++F EM   G  P+  TYN++++GL  T     A E    + 
Sbjct: 552 YNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGIT 611

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLD----TYNILISSMFVR 430
           +   +  + TYNI++   C     +  L +F+ +    CL +L     T+NI+I ++   
Sbjct: 612 ESGTQLELSTYNIILHGLCKNNLTDEALRMFQNL----CLTDLQLETRTFNIMIGALLKV 667

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
            ++D+   A  L   +   G +P   T++ +   L+  G
Sbjct: 668 GRNDE---AKDLFAALSANGLVPDVRTYSLMAENLIEQG 703



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 181/380 (47%), Gaps = 6/380 (1%)

Query: 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG--C 169
           L A  R    +  ++ RM  L   P   ++ I+ +      ++  A+++   M + G  C
Sbjct: 136 LCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDC 195

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
              + S+ T+++   KE  ++KAY  + ++       +V++Y+ I    C  +  +KA+E
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAME 255

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           VL  MV  G+ PN  TYN ++ GY  +GQ +EA  F  +M     E DVVTY +++    
Sbjct: 256 VLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLC 315

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G    AR +FD M   G+ P + TY  ++Q    K ++     + + MV  G  PN  
Sbjct: 316 KNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHY 375

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            ++++I      G++++A+    +M+     P+  TY  +I   C +G +E  +  FE+M
Sbjct: 376 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM 435

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
                 P    YN LI S+ +  K D    A +L++EM+DRG       FN +++     
Sbjct: 436 IDERLSPGNIVYNSLIHSLCIFDKWDK---AKELILEMLDRGICLDTIFFNSIIDSHCKE 492

Query: 469 GNQGLAKEILRLQSRCGRLP 488
           G    ++++  L  R G  P
Sbjct: 493 GRVIESEKLFDLMVRIGVKP 512



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/424 (22%), Positives = 183/424 (43%), Gaps = 74/424 (17%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P  +T+  I   Y S+G+   A+     MH  G    + ++N+++D LCK  +  +A  +
Sbjct: 267 PNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKM 326

Query: 196 FKVFRGK-FKADVISYNVIANGWC----LVK----------------------------- 221
           F     +  K ++ +Y  +  G+     LV+                             
Sbjct: 327 FDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAK 386

Query: 222 --RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
             + ++A+ V  +M  +GLNP+  TY  V+    ++G++E+A R+F +M   +     + 
Sbjct: 387 QGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIV 446

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y +++H   +  +  +A+ +   M++ G+      +N++I   CK+  V  +  +F+ MV
Sbjct: 447 YNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMV 506

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             G  P+  TY+ +I G C  G+M+ A + +  M     +P+  TYN LI  +C    +E
Sbjct: 507 RIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRME 566

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP------ 453
             L LF +M S    P++ TYNI++  +F  +++     A +L + + + G         
Sbjct: 567 DALVLFREMESSGVSPDIITYNIILQGLFQTRRT---AAAKELYVGITESGTQLELSTYN 623

Query: 454 ----------------RKF-------------TFNRVLNGLLLIGNQGLAKEILRLQSRC 484
                           R F             TFN ++  LL +G    AK++    S  
Sbjct: 624 IILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSAN 683

Query: 485 GRLP 488
           G +P
Sbjct: 684 GLVP 687



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 150/300 (50%), Gaps = 4/300 (1%)

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYN 211
           K D+A ++ L M + G       FN+I+D  CKE +V ++  LF +  R   K D+I+Y+
Sbjct: 459 KWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYS 518

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
            + +G+CL  + ++A ++L  MV  G+ P+  TYN ++ GY +  ++E+A   F EM+  
Sbjct: 519 TLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESS 578

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
               D++TY  I+ G         A+ ++ G+   G    ++TYN ++  LCK +  + A
Sbjct: 579 GVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEA 638

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
           + +F+ +        + T+N++I  L   G  + A +    +  +   P+V+TY+++   
Sbjct: 639 LRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAEN 698

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
             + G +E   +LF  M    C  N    N ++  +  R    D+  AG  L  + ++ F
Sbjct: 699 LIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRG---DITRAGTYLFMIDEKHF 755



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 156/331 (47%), Gaps = 7/331 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+ I+      AG+ D       ++ + G R    +F  +L  LC +K+   A ++
Sbjct: 89  PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 148

Query: 196 F--KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN--PNLTTYNIVLKG 251
              ++ +     +V SYN++  G C   R+ +ALE+L+ M D G +  P++ +Y  V+ G
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
           +F+ G +++A+  + EM  R    +VVTY++I+        + +A  V   MV  GV+P+
Sbjct: 209 FFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPN 268

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
             TYN+++   C     + AI   ++M   G  P+  TYN ++  LC  G    A +   
Sbjct: 269 CRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFD 328

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
            M     +P + TY  L++ +   G +     L + M      PN   ++ILI +   + 
Sbjct: 329 SMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQG 388

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           K D  ++   +  +M  +G  P   T+  V+
Sbjct: 389 KVDQAML---VFSKMRQQGLNPDTVTYGTVI 416



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 110/244 (45%), Gaps = 8/244 (3%)

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI--DVVTYTTI 283
           A  V  E++ RG   ++   N  L    R        R+    +    E+  ++ TY  +
Sbjct: 38  ARHVFDELLRRGRGASIYGLNCALADVARHSPAAAVSRYNRMARAGADEVTPNLCTYGIL 97

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI-LVFEEMVGKG 342
           +      G +         ++  G       +  +++ LC      +A+ +V   M   G
Sbjct: 98  IGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLG 157

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD--ECEPNVQTYNILIRYFCDAGEIER 400
            +PN  +YN++++GLC     + ALE +  M DD  +C P+V +Y  +I  F   G++++
Sbjct: 158 CIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDK 217

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
               + +M     LPN+ TY+ +I+++   +  D    A ++L  MV  G MP   T+N 
Sbjct: 218 AYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDK---AMEVLTSMVKNGVMPNCRTYNS 274

Query: 461 VLNG 464
           +++G
Sbjct: 275 IVHG 278


>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 817

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 166/322 (51%), Gaps = 1/322 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  +    ++R  +   +L+  M+     P   T++I+ +  +     + A++++   
Sbjct: 283 TFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQA 342

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRT 223
            E G R +  + + +L+ LCK+ KVEKA  + K F      AD + YN   NG+C +   
Sbjct: 343 TEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDM 402

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           NKA+  ++ M   GL PN  T+N ++  +    ++++A  +  +M ++     V TY T+
Sbjct: 403 NKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTL 462

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G+G +    R   + + M   GV P+V +Y ++I  LCK   +  A +V  +M+ +G 
Sbjct: 463 IDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGV 522

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
           +PN+  YN++I G C  G+++ AL F   M   E  P + TYN+LI   C  G++    +
Sbjct: 523 LPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAED 582

Query: 404 LFEKMGSGVCLPNLDTYNILIS 425
              ++ S    P++ TYN LIS
Sbjct: 583 FLTQITSSGHSPDVITYNSLIS 604



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 177/365 (48%), Gaps = 4/365 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           +  AI  A +L++ +     +  M+   + P    + ++        +   A K+F  M 
Sbjct: 179 YAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDAEKMFDEMC 238

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTN 224
                 S+ ++NT++D  CK  +++ A+ + +  + K  A ++I++N + +G C +++  
Sbjct: 239 NINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMK 298

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           +A  +LKEM   G  P+  TY+I+  G  R      A   + +  ++   I+  T + ++
Sbjct: 299 EARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGIRINNYTGSILL 358

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
           +G    G++++A  +       G++     YN  +   C+   +  AIL  E M   G  
Sbjct: 359 NGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLR 418

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           PNS T+N +I   C   EM++A E+V +M +    P+V+TYN LI  +      +R  ++
Sbjct: 419 PNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQI 478

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
            E+M      PN+ +Y  LI+ +    K   +L A  +L +M+ RG +P    +N +++G
Sbjct: 479 LEQMEEIGVKPNVVSYGSLINCLC---KDGKILEAEIVLRDMICRGVLPNAQVYNMLIDG 535

Query: 465 LLLIG 469
             ++G
Sbjct: 536 SCMVG 540



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 185/376 (49%), Gaps = 9/376 (2%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           R+RD   ++     M +++L  +  T+  + + Y   G+ D A K+   M E     ++ 
Sbjct: 226 RIRDAEKMF---DEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNII 282

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           +FN++L  LCK +K+++A +L K      F  D  +Y+++ +G       N A+E+ ++ 
Sbjct: 283 TFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQA 342

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
            ++G+  N  T +I+L G  + G++E+A     +  +     D V Y T V+G+  +G++
Sbjct: 343 TEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDM 402

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
            +A    + M + G+ P+  T+N++I   C    ++ A    ++M  KG  P+  TYN +
Sbjct: 403 NKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTL 462

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI-ERGLELFEKMGSGV 412
           I G       +R  + + +M++   +PNV +Y  LI   C  G+I E  + L + +  GV
Sbjct: 463 IDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGV 522

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
            LPN   YN+LI    +  K  D L   +   EM+     P   T+N +++GL   G   
Sbjct: 523 -LPNAQVYNMLIDGSCMVGKVKDAL---RFFDEMMRSEISPTLVTYNVLIDGLCKKGKLT 578

Query: 473 LAKEILRLQSRCGRLP 488
            A++ L   +  G  P
Sbjct: 579 EAEDFLTQITSSGHSP 594



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 161/359 (44%), Gaps = 37/359 (10%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  ID    +++       V +M    + P+ +T+  + + Y      DR  +I   M
Sbjct: 423 TFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQM 482

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKR 222
            E G + ++ S+ ++++ LCK+ K+ +A  + +  + RG      + YN++ +G C+V +
Sbjct: 483 EEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQV-YNMLIDGSCMVGK 541

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
              AL    EM+   ++P L TYN+++ G  + G++ EA  F  ++       DV+TY +
Sbjct: 542 VKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNS 601

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY--------------------------- 315
           ++ G+   G + +   +++ M N G+ P+V TY                           
Sbjct: 602 LISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSKEGIELVEKLYNEMLQMNL 661

Query: 316 -------NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
                  NAMI    +  + + A  + + M+ +G  P+  TYN +I G    G++    +
Sbjct: 662 LPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKD 721

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
            V  MK  E  P   TY+IL++  CD  +       + +M     LPN    N L + +
Sbjct: 722 LVNNMKAKELAPKADTYDILVKGHCDLKDFSGAYVWYREMVENNFLPNASICNELTAGL 780



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 161/351 (45%), Gaps = 5/351 (1%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           R+ D       + RM+S  L P   TF  + +++    + D+A +    M E G   S+ 
Sbjct: 398 RIGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVE 457

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           ++NT++D   K    ++ + + +       K +V+SY  + N  C   +  +A  VL++M
Sbjct: 458 TYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDM 517

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           + RG+ PN   YN+++ G    G++++A RFF EM + +    +VTY  ++ G    G++
Sbjct: 518 ICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKL 577

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
             A +    + + G  P V TYN++I       +V   + ++E M   G  P   TY+ +
Sbjct: 578 TEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPL 637

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           I G C    +E   +    M      P+   YN +I  + + G  ++   L + M     
Sbjct: 638 ISG-CSKEGIELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGI 696

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
            P+  TYN LI   F   K  ++     L+  M  +   P+  T++ ++ G
Sbjct: 697 HPDKMTYNSLILGHFREGKLSNI---KDLVNNMKAKELAPKADTYDILVKG 744



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 153/310 (49%), Gaps = 4/310 (1%)

Query: 156 RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIA 214
           + V +F+ +   G R     +   +    K + ++         R +  + +V  YNV+ 
Sbjct: 159 KVVDLFMEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLI 218

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
            G C  KR   A ++  EM +  L  ++ TYN ++ GY + G+++ A++    MK++   
Sbjct: 219 GGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVA 278

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
            +++T+ +++ G   + ++K AR++   M   G +P   TY+ +   L + D    A+ +
Sbjct: 279 PNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMEL 338

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
           +E+   KG   N+ T ++++ GLC  G++E+A E + +  ++    +   YN  +  +C 
Sbjct: 339 YEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCR 398

Query: 395 AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
            G++ + +   E+M S    PN  T+N LI      K+ D    A + + +M ++G  P 
Sbjct: 399 IGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDK---AEEWVKKMAEKGVTPS 455

Query: 455 KFTFNRVLNG 464
             T+N +++G
Sbjct: 456 VETYNTLIDG 465



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 103/216 (47%), Gaps = 3/216 (1%)

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
            F+E++      D   Y   +     +  +K      D M   GV P+V  YN +I  LC
Sbjct: 163 LFMEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLC 222

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
           ++  + +A  +F+EM     + +  TYN +I G C  GE++ A +   RMK+    PN+ 
Sbjct: 223 REKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNII 282

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
           T+N L+   C   +++    L ++M     +P+  TY+IL   +    + DD   A +L 
Sbjct: 283 TFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLL---RCDDGNGAMELY 339

Query: 444 IEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
            +  ++G     +T + +LNGL   G    A+EIL+
Sbjct: 340 EQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILK 375



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 122/274 (44%), Gaps = 37/274 (13%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN- 194
           P  + + ++ +     GK   A++ F  M       +L ++N ++D LCK+ K+ +A + 
Sbjct: 524 PNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDF 583

Query: 195 LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           L ++       DVI+YN + +G+      +K L + + M + G+ P + TY+ ++ G  +
Sbjct: 584 LTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSK 643

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G IE   + + EM +     D V Y  ++H +  +G  ++A ++  GM++ G+ P   T
Sbjct: 644 EG-IELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMT 702

Query: 315 YNAMI-------QVLCKKDSVEN----------------------------AILVFEEMV 339
           YN++I       ++   KD V N                            A + + EMV
Sbjct: 703 YNSLILGHFREGKLSNIKDLVNNMKAKELAPKADTYDILVKGHCDLKDFSGAYVWYREMV 762

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
              ++PN++  N +  GL   G ++        M
Sbjct: 763 ENNFLPNASICNELTAGLEQEGRLQEVQVICSEM 796



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 119/261 (45%), Gaps = 9/261 (3%)

Query: 86  ALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAI 143
           AL FF+ +        SP+  +++  ID   +          + ++ S    P   T+  
Sbjct: 545 ALRFFDEMMRSEI---SPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNS 601

Query: 144 IAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE--KKVEKAYNLFKVFRG 201
           +   Y +AG   + + ++ +M   G + ++ +++ ++    KE  + VEK YN  ++ + 
Sbjct: 602 LISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSKEGIELVEKLYN--EMLQM 659

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
               D + YN + + +  +  T KA  + + M+D+G++P+  TYN ++ G+FR G++   
Sbjct: 660 NLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNI 719

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
                 MK ++      TY  +V G   + +   A   +  MV    LP+ +  N +   
Sbjct: 720 KDLVNNMKAKELAPKADTYDILVKGHCDLKDFSGAYVWYREMVENNFLPNASICNELTAG 779

Query: 322 LCKKDSVENAILVFEEMVGKG 342
           L ++  ++   ++  EM  KG
Sbjct: 780 LEQEGRLQEVQVICSEMNVKG 800



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 72/158 (45%), Gaps = 3/158 (1%)

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           +F E+   G+  ++  Y   I+       ++  +EF+  M+     PNV  YN+LI   C
Sbjct: 163 LFMEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLC 222

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
               I    ++F++M +   + ++ TYN LI       K  +L  A K+   M ++   P
Sbjct: 223 REKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYC---KVGELDAAFKMRERMKEKSVAP 279

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
              TFN +L+GL  +     A+ +L+     G +P  +
Sbjct: 280 NIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGY 317


>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 107/363 (29%), Positives = 179/363 (49%), Gaps = 8/363 (2%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   I+   R ++ R  + L+  MK  ++  +  T+  + +   S+G  D A  I   M
Sbjct: 384 AYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEM 443

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRT 223
              GCR ++  + T++    +  +   A  + K  + +  A D+  YN +  G    KR 
Sbjct: 444 IASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRM 503

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI--DVVTYT 281
           ++A   L EMV+ GL PN  TY   + GY  A +   A ++  EM  R+C +  + V  T
Sbjct: 504 DEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEM--RECGVLPNKVLCT 561

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
            +++ +   G++  A + +  MV+ G+L    TY  ++  L K D V++A  +F EM GK
Sbjct: 562 GLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGK 621

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
           G  P+  +Y V+I G    G M++A      M ++   PNV  YN+L+  FC +GEIE+ 
Sbjct: 622 GIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKA 681

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
            EL ++M      PN  TY  +I       KS DL  A +L  EM  +G +P  F +  +
Sbjct: 682 KELLDEMSVKGLHPNAVTYCTIIDGYC---KSGDLAEAFRLFDEMKLKGLVPDSFVYTTL 738

Query: 462 LNG 464
           ++G
Sbjct: 739 VDG 741



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/424 (22%), Positives = 185/424 (43%), Gaps = 38/424 (8%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           SP ++   +       D    + +V  M +    P    +  + + ++   +   A+++ 
Sbjct: 416 SPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVL 475

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGW--- 217
             M E G    +  +N+++  L K K++++A + L ++     K +  +Y    +G+   
Sbjct: 476 KEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEA 535

Query: 218 --------------------------------CLVKRTNKALEVLKEMVDRGLNPNLTTY 245
                                           C   +  +A    + MVD+G+  +  TY
Sbjct: 536 SEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTY 595

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
            +++ G F+  ++++A   F EM+ +    DV +Y  +++GF  +G +++A ++FD MV 
Sbjct: 596 TVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVE 655

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G+ P+V  YN ++   C+   +E A  + +EM  KG  PN+ TY  +I G C +G++  
Sbjct: 656 EGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAE 715

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           A      MK     P+   Y  L+   C   ++ER + +F     G C  +   +N LI+
Sbjct: 716 AFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKG-CASSTAPFNALIN 774

Query: 426 SMFVRKKSD-DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484
            +F   K++    V  +L+    DR   P   T+N +++ L   GN   AKE+       
Sbjct: 775 WVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNA 834

Query: 485 GRLP 488
             +P
Sbjct: 835 NLMP 838



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/429 (24%), Positives = 185/429 (43%), Gaps = 43/429 (10%)

Query: 103 PSSFDHAIDLAARLR--DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P++F +   ++  +   ++ +    V  M+   + P +     +   Y   GK   A   
Sbjct: 520 PNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSA 579

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCL 219
           + SM + G      ++  +++ L K  KV+ A  +F+  RGK  A DV SY V+ NG+  
Sbjct: 580 YRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSK 639

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
           +    KA  +  EMV+ GL PN+  YN++L G+ R+G+IE+A     EM  +    + VT
Sbjct: 640 LGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVT 699

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE-- 337
           Y TI+ G+   G++  A  +FD M   G++P    Y  ++   C+ + VE AI +F    
Sbjct: 700 YCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNK 759

Query: 338 ------------------MVGKGYM------------------PNSTTYNVVIRGLCHTG 361
                               GK  +                  PN  TYN++I  LC  G
Sbjct: 760 KGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEG 819

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
            +E A E   +M++    P V TY  L+  +   G       +F++  +    P+   Y+
Sbjct: 820 NLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYS 879

Query: 422 ILISSMFVRKKSDDLLVAGKLLI--EMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           ++I++      +   LV    +     VD G      T   +L+G   +G   +A++++ 
Sbjct: 880 VIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVME 939

Query: 480 LQSRCGRLP 488
              R   +P
Sbjct: 940 NMVRLQYIP 948



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 168/388 (43%), Gaps = 10/388 (2%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++D  ID   +++      +L+  M SL +     T++++ +  +    AD A  +   M
Sbjct: 279 TYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEM 338

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVI----SYNVIANGWCLV 220
             HG       ++  + ++ KE  +EKA  LF    G   + +I    +Y  +  G+C  
Sbjct: 339 VSHGINIKPYMYDCCICVMSKEGVMEKAKALFD---GMIASGLIPQAQAYASLIEGYCRE 395

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
           K   +  E+L EM  R +  +  TY  V+KG   +G ++ A+    EM    C  +VV Y
Sbjct: 396 KNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIY 455

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
           TT++  F        A  V   M   G+ P +  YN++I  L K   ++ A     EMV 
Sbjct: 456 TTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVE 515

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
            G  PN+ TY   I G     E   A ++V  M++    PN      LI  +C  G++  
Sbjct: 516 NGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIE 575

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
               +  M     L +  TY +L++ +F   K DD   A ++  EM  +G  P  F++  
Sbjct: 576 ACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDD---AEEIFREMRGKGIAPDVFSYGV 632

Query: 461 VLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           ++NG   +GN   A  I       G  P
Sbjct: 633 LINGFSKLGNMQKASSIFDEMVEEGLTP 660



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 134/282 (47%), Gaps = 3/282 (1%)

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           +Y+V+ +G C +KR   A  +L EM   G++ +  TY++++ G  +    + A     EM
Sbjct: 279 TYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEM 338

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
                 I    Y   +      G +++A+ +FDGM+  G++P    Y ++I+  C++ +V
Sbjct: 339 VSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNV 398

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
                +  EM  +  + +  TY  V++G+C +G+++ A   V  M    C PNV  Y  L
Sbjct: 399 RQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTL 458

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           I+ F         + + ++M      P++  YN LI  +   K+ D+   A   L+EMV+
Sbjct: 459 IKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDE---ARSFLVEMVE 515

Query: 449 RGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
            G  P  FT+   ++G +       A + ++    CG LP +
Sbjct: 516 NGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNK 557



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 119/278 (42%), Gaps = 9/278 (3%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M    L P   T+  I + Y  +G    A ++F  M   G       + T++D  C
Sbjct: 684 LLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCC 743

Query: 185 KEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN----P 240
           +   VE+A  +F   +    +    +N + N      +T    EVL  ++D   +    P
Sbjct: 744 RLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKP 803

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           N  TYNI++    + G +E A   F +M+       V+TYT++++G+  +G       VF
Sbjct: 804 NDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVF 863

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS-----TTYNVVIR 355
           D  +  G+ P    Y+ +I    K+     A+++ ++M  K  + +      +T   ++ 
Sbjct: 864 DEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLS 923

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           G    GEME A + +  M   +  P+  T   LI   C
Sbjct: 924 GFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESC 961



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 139/319 (43%), Gaps = 13/319 (4%)

Query: 102 SPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           +P  F +   I+  ++L + +   ++   M    L P    + ++   +  +G+ ++A +
Sbjct: 624 APDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKE 683

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWC 218
           +   M   G   +  ++ TI+D  CK   + +A+ LF   + K    D   Y  + +G C
Sbjct: 684 LLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCC 743

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE---EAWRFFLEMK-KRKCE 274
            +    +A+ +      +G   +   +N ++   F+ G+ E   E     ++    R  +
Sbjct: 744 RLNDVERAITIFGTN-KKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGK 802

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
            + VTY  ++      G ++ A+ +F  M N  ++P+V TY +++    K         V
Sbjct: 803 PNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPV 862

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM-----KDDECEPNVQTYNILI 389
           F+E +  G  P+   Y+V+I      G   +AL  V +M      DD C+ ++ T   L+
Sbjct: 863 FDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALL 922

Query: 390 RYFCDAGEIERGLELFEKM 408
             F   GE+E   ++ E M
Sbjct: 923 SGFAKVGEMEVAEKVMENM 941


>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g61990, mitochondrial; Flags: Precursor
 gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 974

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 107/363 (29%), Positives = 179/363 (49%), Gaps = 8/363 (2%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   I+   R ++ R  + L+  MK  ++  +  T+  + +   S+G  D A  I   M
Sbjct: 384 AYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEM 443

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRT 223
              GCR ++  + T++    +  +   A  + K  + +  A D+  YN +  G    KR 
Sbjct: 444 IASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRM 503

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI--DVVTYT 281
           ++A   L EMV+ GL PN  TY   + GY  A +   A ++  EM  R+C +  + V  T
Sbjct: 504 DEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEM--RECGVLPNKVLCT 561

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
            +++ +   G++  A + +  MV+ G+L    TY  ++  L K D V++A  +F EM GK
Sbjct: 562 GLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGK 621

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
           G  P+  +Y V+I G    G M++A      M ++   PNV  YN+L+  FC +GEIE+ 
Sbjct: 622 GIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKA 681

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
            EL ++M      PN  TY  +I       KS DL  A +L  EM  +G +P  F +  +
Sbjct: 682 KELLDEMSVKGLHPNAVTYCTIIDGYC---KSGDLAEAFRLFDEMKLKGLVPDSFVYTTL 738

Query: 462 LNG 464
           ++G
Sbjct: 739 VDG 741



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/424 (22%), Positives = 185/424 (43%), Gaps = 38/424 (8%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           SP ++   +       D    + +V  M +    P    +  + + ++   +   A+++ 
Sbjct: 416 SPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVL 475

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGW--- 217
             M E G    +  +N+++  L K K++++A + L ++     K +  +Y    +G+   
Sbjct: 476 KEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEA 535

Query: 218 --------------------------------CLVKRTNKALEVLKEMVDRGLNPNLTTY 245
                                           C   +  +A    + MVD+G+  +  TY
Sbjct: 536 SEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTY 595

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
            +++ G F+  ++++A   F EM+ +    DV +Y  +++GF  +G +++A ++FD MV 
Sbjct: 596 TVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVE 655

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G+ P+V  YN ++   C+   +E A  + +EM  KG  PN+ TY  +I G C +G++  
Sbjct: 656 EGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAE 715

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           A      MK     P+   Y  L+   C   ++ER + +F     G C  +   +N LI+
Sbjct: 716 AFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKG-CASSTAPFNALIN 774

Query: 426 SMFVRKKSD-DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484
            +F   K++    V  +L+    DR   P   T+N +++ L   GN   AKE+       
Sbjct: 775 WVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNA 834

Query: 485 GRLP 488
             +P
Sbjct: 835 NLMP 838



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/429 (24%), Positives = 185/429 (43%), Gaps = 43/429 (10%)

Query: 103 PSSFDHAIDLAARLR--DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P++F +   ++  +   ++ +    V  M+   + P +     +   Y   GK   A   
Sbjct: 520 PNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSA 579

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCL 219
           + SM + G      ++  +++ L K  KV+ A  +F+  RGK  A DV SY V+ NG+  
Sbjct: 580 YRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSK 639

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
           +    KA  +  EMV+ GL PN+  YN++L G+ R+G+IE+A     EM  +    + VT
Sbjct: 640 LGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVT 699

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE-- 337
           Y TI+ G+   G++  A  +FD M   G++P    Y  ++   C+ + VE AI +F    
Sbjct: 700 YCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNK 759

Query: 338 ------------------MVGKGYM------------------PNSTTYNVVIRGLCHTG 361
                               GK  +                  PN  TYN++I  LC  G
Sbjct: 760 KGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEG 819

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
            +E A E   +M++    P V TY  L+  +   G       +F++  +    P+   Y+
Sbjct: 820 NLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYS 879

Query: 422 ILISSMFVRKKSDDLLVAGKLLI--EMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           ++I++      +   LV    +     VD G      T   +L+G   +G   +A++++ 
Sbjct: 880 VIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVME 939

Query: 480 LQSRCGRLP 488
              R   +P
Sbjct: 940 NMVRLQYIP 948



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 168/388 (43%), Gaps = 10/388 (2%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++D  ID   +++      +L+  M SL +     T++++ +  +    AD A  +   M
Sbjct: 279 TYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEM 338

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVI----SYNVIANGWCLV 220
             HG       ++  + ++ KE  +EKA  LF    G   + +I    +Y  +  G+C  
Sbjct: 339 VSHGINIKPYMYDCCICVMSKEGVMEKAKALFD---GMIASGLIPQAQAYASLIEGYCRE 395

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
           K   +  E+L EM  R +  +  TY  V+KG   +G ++ A+    EM    C  +VV Y
Sbjct: 396 KNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIY 455

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
           TT++  F        A  V   M   G+ P +  YN++I  L K   ++ A     EMV 
Sbjct: 456 TTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVE 515

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
            G  PN+ TY   I G     E   A ++V  M++    PN      LI  +C  G++  
Sbjct: 516 NGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIE 575

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
               +  M     L +  TY +L++ +F   K DD   A ++  EM  +G  P  F++  
Sbjct: 576 ACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDD---AEEIFREMRGKGIAPDVFSYGV 632

Query: 461 VLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           ++NG   +GN   A  I       G  P
Sbjct: 633 LINGFSKLGNMQKASSIFDEMVEEGLTP 660



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 134/282 (47%), Gaps = 3/282 (1%)

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           +Y+V+ +G C +KR   A  +L EM   G++ +  TY++++ G  +    + A     EM
Sbjct: 279 TYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEM 338

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
                 I    Y   +      G +++A+ +FDGM+  G++P    Y ++I+  C++ +V
Sbjct: 339 VSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNV 398

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
                +  EM  +  + +  TY  V++G+C +G+++ A   V  M    C PNV  Y  L
Sbjct: 399 RQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTL 458

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           I+ F         + + ++M      P++  YN LI  +   K+ D+   A   L+EMV+
Sbjct: 459 IKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDE---ARSFLVEMVE 515

Query: 449 RGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
            G  P  FT+   ++G +       A + ++    CG LP +
Sbjct: 516 NGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNK 557



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 119/278 (42%), Gaps = 9/278 (3%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M    L P   T+  I + Y  +G    A ++F  M   G       + T++D  C
Sbjct: 684 LLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCC 743

Query: 185 KEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN----P 240
           +   VE+A  +F   +    +    +N + N      +T    EVL  ++D   +    P
Sbjct: 744 RLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKP 803

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           N  TYNI++    + G +E A   F +M+       V+TYT++++G+  +G       VF
Sbjct: 804 NDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVF 863

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS-----TTYNVVIR 355
           D  +  G+ P    Y+ +I    K+     A+++ ++M  K  + +      +T   ++ 
Sbjct: 864 DEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLS 923

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           G    GEME A + +  M   +  P+  T   LI   C
Sbjct: 924 GFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESC 961



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 139/319 (43%), Gaps = 13/319 (4%)

Query: 102 SPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           +P  F +   I+  ++L + +   ++   M    L P    + ++   +  +G+ ++A +
Sbjct: 624 APDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKE 683

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWC 218
           +   M   G   +  ++ TI+D  CK   + +A+ LF   + K    D   Y  + +G C
Sbjct: 684 LLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCC 743

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE---EAWRFFLEMK-KRKCE 274
            +    +A+ +      +G   +   +N ++   F+ G+ E   E     ++    R  +
Sbjct: 744 RLNDVERAITIFGTN-KKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGK 802

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
            + VTY  ++      G ++ A+ +F  M N  ++P+V TY +++    K         V
Sbjct: 803 PNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPV 862

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM-----KDDECEPNVQTYNILI 389
           F+E +  G  P+   Y+V+I      G   +AL  V +M      DD C+ ++ T   L+
Sbjct: 863 FDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALL 922

Query: 390 RYFCDAGEIERGLELFEKM 408
             F   GE+E   ++ E M
Sbjct: 923 SGFAKVGEMEVAEKVMENM 941


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/361 (28%), Positives = 180/361 (49%), Gaps = 4/361 (1%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           +  V + +  M+   +     T+  +   Y   G  + A +I  SM + G + SL ++N 
Sbjct: 134 FDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNA 193

Query: 179 ILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           I++ LCK+ +  +A   L ++       D  +YN +    C     ++A E+  EM+ +G
Sbjct: 194 IINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQG 253

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
           + P+L +++ ++  + R   +++A  +F +MKK     D V YT ++HG+   G +  A 
Sbjct: 254 VVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEAL 313

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
            + D M+  G +  V  YN ++  LCK+  + +A  +F+EMV +G +P+  T+  +I G 
Sbjct: 314 KIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGH 373

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
           C  G M +AL   G M     +P++  YN LI  FC  GE+E+  EL++ M S    PN 
Sbjct: 374 CQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNH 433

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
            TY ILI++        +   A +L   M+++G  P   T N V+ G    G+   A E 
Sbjct: 434 ITYGILINAYCSVGHVSE---AFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEF 490

Query: 478 L 478
           L
Sbjct: 491 L 491



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/351 (28%), Positives = 167/351 (47%), Gaps = 6/351 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           SF   I + +R R           MK   L P    + ++   Y   G    A+KI   M
Sbjct: 260 SFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEM 319

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKR 222
            E GC   + ++NTIL+ LCKEK +  A  LF   V RG    D  ++  + +G C    
Sbjct: 320 LEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGAL-PDFYTFTTLIHGHCQDGN 378

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
             KAL +   M  R + P++  YN ++ G+ + G++E+A   +  M  RK   + +TY  
Sbjct: 379 MTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGI 438

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           +++ +  VG +  A  ++D M+  G+ P++ T N +I+  C+      A      M+ KG
Sbjct: 439 LINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKG 498

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
             P+  +YN +I G      M++A  ++ +M+ +   P++ TYN+++  FC  G ++   
Sbjct: 499 VAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAE 558

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
            +  KM      P+  TY  LI+    +   D+L  A +   EM+ RGF P
Sbjct: 559 LVLRKMIEKGINPDRSTYTALINGHVTQ---DNLNEAFRFHDEMLQRGFAP 606



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 169/367 (46%), Gaps = 4/367 (1%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           + +++ M    L P+  T+  I       G+  RA  I + M   G      ++NT+L  
Sbjct: 173 FEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVE 232

Query: 183 LCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
            C+     +A  +F ++ R     D++S++ +   +   +  ++AL   ++M   GL P+
Sbjct: 233 SCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPD 292

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
              Y +++ GY R G + EA +   EM ++ C +DV+ Y TI++G      +  A  +FD
Sbjct: 293 NVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFD 352

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            MV  G LP   T+  +I   C+  ++  A+ +F  M  +   P+   YN +I G C  G
Sbjct: 353 EMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVG 412

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
           EME+A E    M   +  PN  TY ILI  +C  G +     L++ M      P L T N
Sbjct: 413 EMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCN 472

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481
            +I       +S D   A + L  M+ +G  P   ++N ++NG +   N   A   +   
Sbjct: 473 TVIKGYC---RSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKM 529

Query: 482 SRCGRLP 488
            + G LP
Sbjct: 530 EKEGLLP 536



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 186/394 (47%), Gaps = 8/394 (2%)

Query: 90  FNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
           F I++        PS  +++  I+   +   Y     ++  M ++ L P   T+  +   
Sbjct: 173 FEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVE 232

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFK--A 205
                    A +IF  M   G    L SF++++ +  + + +++A   F+  + KF    
Sbjct: 233 SCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMK-KFGLVP 291

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           D + Y V+ +G+C      +AL++  EM+++G   ++  YN +L G  +   + +A + F
Sbjct: 292 DNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLF 351

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
            EM +R    D  T+TT++HG    G + +A ++F  M    + P +  YN +I   CK 
Sbjct: 352 DEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKV 411

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
             +E A  +++ M+ +   PN  TY ++I   C  G +  A      M +   +P + T 
Sbjct: 412 GEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTC 471

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           N +I+ +C +G+  +  E   +M +    P+  +YN LI+  FVR+  D++  A   + +
Sbjct: 472 NTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLING-FVRE--DNMDKAFLWINK 528

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           M   G +P   T+N V+NG    G    A+ +LR
Sbjct: 529 MEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLR 562



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 164/337 (48%), Gaps = 4/337 (1%)

Query: 135 GPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN 194
           G     F ++   YV A K     + F  +   G   S+N+ N++L  L K   VE A+ 
Sbjct: 45  GTNNLVFDLLIRTYVQARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELAWE 104

Query: 195 LFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
           + + V R   + +V + N++ N  C   + +     L EM   G+  ++ TYN ++  Y 
Sbjct: 105 VHREVVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYC 164

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
           R G +EEA+     M  +  +  + TY  I++G    G   RA+ +   M+N G+ P   
Sbjct: 165 REGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTT 224

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           TYN ++   C++D+   A  +F EM+ +G +P+  +++ +I        +++AL +   M
Sbjct: 225 TYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDM 284

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
           K     P+   Y +L+  +C  G +   L++ ++M    C+ ++  YN +++ +   K  
Sbjct: 285 KKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKML 344

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
            D   A KL  EMV+RG +P  +TF  +++G    GN
Sbjct: 345 TD---ADKLFDEMVERGALPDFYTFTTLIHGHCQDGN 378



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 116/248 (46%), Gaps = 36/248 (14%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   TF  +   +   G   +A+ +F +M +   +  + ++NT++D  CK  ++EKA  L
Sbjct: 361 PDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASEL 420

Query: 196 FK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           +  +   K   + I+Y ++ N +C V   ++A  +   M+++G+ P L T N V+KGY R
Sbjct: 421 WDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCR 480

Query: 255 AGQ-----------------------------------IEEAWRFFLEMKKRKCEIDVVT 279
           +G                                    +++A+ +  +M+K     D++T
Sbjct: 481 SGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIIT 540

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y  +++GF   G ++ A  V   M+  G+ P  +TY A+I     +D++  A    +EM+
Sbjct: 541 YNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEML 600

Query: 340 GKGYMPNS 347
            +G+ P+ 
Sbjct: 601 QRGFAPDD 608



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 121/283 (42%), Gaps = 3/283 (1%)

Query: 188 KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           +VE    L     G    + + ++++   +   ++  +  E  + +  +G   ++   N 
Sbjct: 29  RVEVVEALVSSMCGNCGTNNLVFDLLIRTYVQARKLREGTEAFRILRSKGYLVSINACNS 88

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           +L G  +   +E AW    E+ +   E++V T   +V+     G+    ++    M   G
Sbjct: 89  LLGGLVKIDWVELAWEVHREVVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNG 148

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           +   + TYN +I   C++  +E A  +   M  KG  P+  TYN +I GLC  G   RA 
Sbjct: 149 IYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAK 208

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
             +  M +    P+  TYN L+   C         E+F +M     +P+L +++ LI+  
Sbjct: 209 GILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVF 268

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
              +  D  LV  +   +M   G +P    +  +++G    GN
Sbjct: 269 SRNRHLDQALVYFR---DMKKFGLVPDNVIYTVLMHGYCRNGN 308


>gi|357134597|ref|XP_003568903.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Brachypodium distachyon]
          Length = 537

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 113/436 (25%), Positives = 205/436 (47%), Gaps = 17/436 (3%)

Query: 47  ILTSTDPRT-LTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSS 105
           IL S+D  T L + LH  +      +V +++++  ++   AL FFN  +  P YAH P +
Sbjct: 89  ILKSSDGDTDLGKALHRFAGEMDEDVVLRVLQKQRSNWQVALLFFNWAAGLPAYAHGPRT 148

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLG--PTQKTFAIIAERYVSAGKADRAVKIFLS 163
           +   +D+  R++  + +  L   +     G   T +TFA++  RY  A K   A+++F  
Sbjct: 149 YTEMLDILGRMKKVKLMTQLFDEIPEERRGLVVTNRTFAVLLNRYAGAHKVQEAIEMFYK 208

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRT 223
             ++G    L  F  +L  LC+ K VE+A  LF   + +F   + S+N+I NGWC+    
Sbjct: 209 RKDYGFEVDLVGFQILLMSLCRYKHVEEAEALFLQKKDEFPPVIKSWNIILNGWCVKGSL 268

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
             A  +  +++   L P+L TY   +    +AG++  A + F  M ++    DV     I
Sbjct: 269 PDAKRIWNQIIASKLKPDLFTYGTFINSLTKAGKLSTAVKLFTSMWEKGINPDVAICNCI 328

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +       +I  A ++F  M + G    VATYN +I+  CK    E    + ++M  KG 
Sbjct: 329 IDQLCFKKKIPEALDIFREMTDRGCQADVATYNTLIKYFCKIRRTEKVYELLDDMENKGC 388

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD---AGEIER 400
            PN+ TY+ +++    T + +  +  + RM+   C  +  TYN+++  +        +++
Sbjct: 389 SPNNMTYSYILK---TTEKPKDVIHLLQRMEKSGCRLDSDTYNLILNLYVSMKYENGVQQ 445

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
             +  E+ GSG   P+  ++ I++  +  + + D  L   +    M  RG  P   T  R
Sbjct: 446 VWDEMERNGSG---PDQRSFTIMVHGLHSQGRLDQAL---QYYTTMKSRGMTPEPRT--R 497

Query: 461 VLNGLLLIGNQGLAKE 476
           +L   + +   G A E
Sbjct: 498 ILVKAIHMKKDGPAVE 513


>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/442 (26%), Positives = 194/442 (43%), Gaps = 48/442 (10%)

Query: 63  PSLHWTPQLVDQIIKRLWNHALKALHFF----------NILSYHPTYA--HSPSSFDHAI 110
           P  H+ P+             LK  HF           N +SY  T    HS +  D A+
Sbjct: 18  PDSHFVPKKFQSF------QFLKNTHFLISFLILLTKINFISYSSTSTTFHSNNDVDDAV 71

Query: 111 DLAARL----------------------RDYRTVWTLVHRMKSLSLGPTQKTFAIIAERY 148
            L  RL                      + Y TV +L  +M+   + P      I+   +
Sbjct: 72  SLFNRLLRQNPTPPAFEFNKILGSLVKSKHYHTVLSLSQKMEFRGIKPNLFNCNILIYCF 131

Query: 149 VSAGKADRAVKIFLSMHEH----GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF- 203
              G     +      H+     G      S+ T++  LCK  +   A +L +   GK  
Sbjct: 132 CQLGLIPCQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLV 191

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
           + + + YN +  G C  K  N A ++  EMV +G++PN+ TY+ ++ G+F  G++++A  
Sbjct: 192 QLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAID 251

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
            F ++     + D  T+  +V GF    ++K  + VF  M+  G++P V TYN+++   C
Sbjct: 252 LFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYC 311

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
               V  A  +F  M   G  P+  +YN++I G C   ++++A+     M      PNV 
Sbjct: 312 LVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVV 371

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
           TYN LI     +G I   L+L ++M      PN+ TYN +I ++F   + D    A  L+
Sbjct: 372 TYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDK---AIALI 428

Query: 444 IEMVDRGFMPRKFTFNRVLNGL 465
            +  D+G  P  +T+  +++GL
Sbjct: 429 TKFKDQGIQPSMYTYTILIDGL 450



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 73/167 (43%), Gaps = 14/167 (8%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID  ++         LV +M    + P   T+  I +      + D+A+ +    
Sbjct: 372 TYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKF 431

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTN 224
            + G + S+ ++  ++D LCK +  +   N              +YNV+ +G+C     +
Sbjct: 432 KDQGIQPSMYTYTILIDGLCKVEGYDITVN--------------TYNVMIHGFCKKGLFD 477

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
           +AL +L +M D    PN  TY I ++      + ++A + F EM  R
Sbjct: 478 EALSLLSKMKDSSCIPNAVTYEITIRSLLDNNENDKAEKLFREMITR 524


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 90/268 (33%), Positives = 142/268 (52%), Gaps = 6/268 (2%)

Query: 195 LFKVFRGKFKADVISYNVIANGWCLVKRTNKALE-VLKEMVDRGLNPNLTTYNIVLKGYF 253
           L  V +  F+ D I++  +  G C  KRT+ A++ VL+ M   G  PN+ +YNI+LKG  
Sbjct: 114 LGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLC 173

Query: 254 RAGQIEEAWRFFLEMKKR--KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
              + +EA      M      C  DVV+YTT+++GF   G++ +A   +  M++ G+LP+
Sbjct: 174 DENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPN 233

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
           V TY+++I  LCK  +++ A+ V   MV  G MPN  TYN ++ G C +G+ + A+ F+ 
Sbjct: 234 VVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLK 293

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
           +M  D  EP+V TYN L+ Y C  G      ++F+ M      P + TY  L+     + 
Sbjct: 294 KMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKG 353

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
               L+    LL  MV  G  P  + F+
Sbjct: 354 A---LVEMHGLLDLMVRNGIHPNHYVFS 378



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 173/339 (51%), Gaps = 12/339 (3%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P    F+I+   Y   GK D+A+ +F  M + G      ++ T++ +LCK  +VE A   
Sbjct: 372 PNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRY 431

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F ++   +     I YN + +  C+  + +KA E++ EM+DRG+  +   +N ++  + +
Sbjct: 432 FEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCK 491

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G++ E+ + F  M +   + D++TY+T++ G+ + G++  A  +   MV+ G+ P   T
Sbjct: 492 EGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVT 551

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN +I   CK   +E+A+++F EM   G  P+  TYN++++GL  T     A E    + 
Sbjct: 552 YNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGIT 611

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLD----TYNILISSMFVR 430
           +   +  + TYNI++   C     +  L +F+ +    CL +L     T+NI+I ++   
Sbjct: 612 ESGTQLELSTYNIILHGLCKNNLTDEALRMFQNL----CLTDLQLETRTFNIMIGALLKV 667

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
            ++D+   A  L   +   G +P   T++ +   L+  G
Sbjct: 668 GRNDE---AKDLFAALSANGLVPDVRTYSLMAENLIEQG 703



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 181/380 (47%), Gaps = 6/380 (1%)

Query: 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG--C 169
           L A  R    +  ++ RM  L   P   ++ I+ +      ++  A+++   M + G  C
Sbjct: 136 LCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDC 195

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
              + S+ T+++   KE  ++KAY  + ++       +V++Y+ I    C  +  +KA+E
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAME 255

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           VL  MV  G+ PN  TYN ++ GY  +GQ +EA  F  +M     E DVVTY +++    
Sbjct: 256 VLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLC 315

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G    AR +FD M   G+ P + TY  ++Q    K ++     + + MV  G  PN  
Sbjct: 316 KNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHY 375

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            ++++I      G++++A+    +M+     P+  TY  +I   C +G +E  +  FE+M
Sbjct: 376 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM 435

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
                 P    YN LI S+ +  K D    A +L++EM+DRG       FN +++     
Sbjct: 436 IDERLSPGNIVYNSLIHSLCIFDKWDK---AKELILEMLDRGICLDTIFFNSIIDSHCKE 492

Query: 469 GNQGLAKEILRLQSRCGRLP 488
           G    ++++  L  R G  P
Sbjct: 493 GRVIESEKLFDLMVRIGVKP 512



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 99/425 (23%), Positives = 184/425 (43%), Gaps = 76/425 (17%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P  +T+  I   Y S+G+   A+     MH  G    + ++N+++D LCK  +  +A  +
Sbjct: 267 PNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKM 326

Query: 196 FKVF--RGKFKADVISYNVIANGWC----LVK---------------------------- 221
           F     RG  K ++ +Y  +  G+     LV+                            
Sbjct: 327 FDSMTKRG-LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYA 385

Query: 222 ---RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
              + ++A+ V  +M  +GLNP+  TY  V+    ++G++E+A R+F +M   +     +
Sbjct: 386 KQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNI 445

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
            Y +++H   +  +  +A+ +   M++ G+      +N++I   CK+  V  +  +F+ M
Sbjct: 446 VYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLM 505

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
           V  G  P+  TY+ +I G C  G+M+ A + +  M     +P+  TYN LI  +C    +
Sbjct: 506 VRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRM 565

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP----- 453
           E  L LF +M S    P++ TYNI++  +F  +++     A +L + + + G        
Sbjct: 566 EDALVLFREMESSGVSPDIITYNIILQGLFQTRRT---AAAKELYVGITESGTQLELSTY 622

Query: 454 -----------------RKF-------------TFNRVLNGLLLIGNQGLAKEILRLQSR 483
                            R F             TFN ++  LL +G    AK++    S 
Sbjct: 623 NIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSA 682

Query: 484 CGRLP 488
            G +P
Sbjct: 683 NGLVP 687



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 150/300 (50%), Gaps = 4/300 (1%)

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYN 211
           K D+A ++ L M + G       FN+I+D  CKE +V ++  LF +  R   K D+I+Y+
Sbjct: 459 KWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYS 518

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
            + +G+CL  + ++A ++L  MV  G+ P+  TYN ++ GY +  ++E+A   F EM+  
Sbjct: 519 TLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESS 578

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
               D++TY  I+ G         A+ ++ G+   G    ++TYN ++  LCK +  + A
Sbjct: 579 GVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEA 638

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
           + +F+ +        + T+N++I  L   G  + A +    +  +   P+V+TY+++   
Sbjct: 639 LRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAEN 698

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
             + G +E   +LF  M    C  N    N ++  +  R    D+  AG  L  + ++ F
Sbjct: 699 LIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRG---DITRAGTYLFMIDEKHF 755



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 156/331 (47%), Gaps = 7/331 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN- 194
           P   T+ I+      AG+ D       ++ + G R    +F  +L  LC +K+   A + 
Sbjct: 89  PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 148

Query: 195 -LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN--PNLTTYNIVLKG 251
            L ++ +     +V SYN++  G C   R+ +ALE+L+ M D G +  P++ +Y  V+ G
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
           +F+ G +++A+  + EM  R    +VVTY++I+        + +A  V   MV  GV+P+
Sbjct: 209 FFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPN 268

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
             TYN+++   C     + AI   ++M   G  P+  TYN ++  LC  G    A +   
Sbjct: 269 CRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFD 328

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
            M     +P + TY  L++ +   G +     L + M      PN   ++ILI +   + 
Sbjct: 329 SMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQG 388

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           K D  ++   +  +M  +G  P   T+  V+
Sbjct: 389 KVDQAML---VFSKMRQQGLNPDTVTYGTVI 416



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 110/244 (45%), Gaps = 8/244 (3%)

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI--DVVTYTTI 283
           A  V  E++ RG   ++   N  L    R        R+    +    E+  ++ TY  +
Sbjct: 38  ARHVFDELLRRGRGASIYGLNCALADVARHSPAAAVSRYNRMARAGADEVTPNLCTYGIL 97

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI-LVFEEMVGKG 342
           +      G +         ++  G       +  +++ LC      +A+ +V   M   G
Sbjct: 98  IGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLG 157

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD--ECEPNVQTYNILIRYFCDAGEIER 400
            +PN  +YN++++GLC     + ALE +  M DD  +C P+V +Y  +I  F   G++++
Sbjct: 158 CIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDK 217

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
               + +M     LPN+ TY+ +I+++   +  D    A ++L  MV  G MP   T+N 
Sbjct: 218 AYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDK---AMEVLTSMVKNGVMPNCRTYNS 274

Query: 461 VLNG 464
           +++G
Sbjct: 275 IVHG 278


>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
          Length = 687

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/388 (28%), Positives = 195/388 (50%), Gaps = 12/388 (3%)

Query: 103 PSSFDHAI--DLAARLRDYRTVWTLVHRMKSLSLGPT--QKTFAIIAERYVSAGKADRAV 158
           P  F ++I  D  +R  D + + +L    KSL  G T    T +I+       GK   A 
Sbjct: 299 PDGFTYSILFDGLSRNGDSKAMLSLFG--KSLKNGVTIGDYTCSILLNGLCKDGKVSIAE 356

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGW 217
           ++  S+   G   +   +NT+++  C+  ++E A++ F   + +  K D I+YN + NG 
Sbjct: 357 EVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGL 416

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           C  +R   A ++L EM D G+NP + T+N ++  Y R GQ+E+ +    EM++   + +V
Sbjct: 417 CKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNV 476

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           V+Y +IV+ F   G+I  A  + D M +  VLP+   YNA+I    +    + A ++ E+
Sbjct: 477 VSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEK 536

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M   G  P+  TYN++I+GLC+  ++  A E +  + +    P+  +YN LI   C  G 
Sbjct: 537 MKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGN 596

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           I++ L+L ++M        + TY+ LIS +     +  L+    L  +M+    +P    
Sbjct: 597 IDKALDLQQRMHKYGIKSTVRTYHQLISGL---GGAGRLIEMEYLYQKMMQNNVVPSNAI 653

Query: 458 FNRVLNGLLLIGNQGLAKEILR--LQSR 483
            N ++      GN+  A+++ +  LQ R
Sbjct: 654 HNIMVEAYSKYGNEIKAEDLRKEMLQKR 681



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 164/380 (43%), Gaps = 41/380 (10%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   ++ ++      AG+   AV++F  M E     +  ++NT++D   K   +E  ++L
Sbjct: 194 PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSL 253

Query: 196 FK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
               V  G  K + I+YNV+ +G C   R  +   +L EM  + + P+  TY+I+  G  
Sbjct: 254 RDQMVCHG-LKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLS 312

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
           R G  +     F +  K    I   T + +++G    G++  A  V   +VN G++P+  
Sbjct: 313 RNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRV 372

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC--------------- 358
            YN +I   C+   +E A   F +M  +   P+  TYN +I GLC               
Sbjct: 373 IYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEM 432

Query: 359 --------------------HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
                                TG++E+    +  M+++  +PNV +Y  ++  FC  G+I
Sbjct: 433 QDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKI 492

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
              + + + M     LPN   YN +I +      +D   +   L+ +M   G  P   T+
Sbjct: 493 PEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFI---LVEKMKSNGISPSIVTY 549

Query: 459 NRVLNGLLLIGNQGLAKEIL 478
           N ++ GL        A+EI+
Sbjct: 550 NLLIKGLCNQSQISEAEEII 569



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 148/335 (44%), Gaps = 7/335 (2%)

Query: 133 SLGPTQKTFA--IIAERYVSAGKADRAVKIFLSMHEHGCRQ-SLNSFNTILDLLCKEKKV 189
           S G    TFA     +  V+AG    AV +   M   G    +  S+N ++  + +  + 
Sbjct: 153 SAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRG 212

Query: 190 EKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
             A  +F ++       + I+YN + +G            +  +MV  GL PN  TYN++
Sbjct: 213 GDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVL 272

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           L G  RAG++ E      EM  +K   D  TY+ +  G    G+ K   ++F   +  GV
Sbjct: 273 LSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGV 332

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
                T + ++  LCK   V  A  V + +V  G +P    YN +I G C TGE+E A  
Sbjct: 333 TIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFS 392

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
             G+MK    +P+  TYN LI   C A  I    +L  +M      P ++T+N LI +  
Sbjct: 393 TFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYG 452

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
              + +   +   +L EM + G  P   ++  ++N
Sbjct: 453 RTGQLEKCFI---VLSEMQENGLKPNVVSYGSIVN 484



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 121/268 (45%), Gaps = 6/268 (2%)

Query: 224 NKALEVLKEMVD--RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
           + AL +L ++ D  R   P+L++ N++L+     G+  +  R F  +       D   + 
Sbjct: 105 DGALRLLSDLADEARAPLPSLSSCNLLLEALLSLGRHADVRRAFGILASAGARPDTFAWN 164

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA-TYNAMIQVLCKKDSVENAILVFEEMVG 340
             V      G++  A  +   M   G  P  A +YN +I  + +     +A+ VF+EM  
Sbjct: 165 KAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTE 224

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           +  +PN  TYN +I G    G++E       +M     +PN  TYN+L+   C AG +  
Sbjct: 225 RAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGE 284

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
              L ++M S   +P+  TY+IL   +     S  +L    L  + +  G     +T + 
Sbjct: 285 TSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAML---SLFGKSLKNGVTIGDYTCSI 341

Query: 461 VLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           +LNGL   G   +A+E+L+     G +P
Sbjct: 342 LLNGLCKDGKVSIAEEVLQSLVNAGLVP 369


>gi|356561401|ref|XP_003548970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 447

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 184/369 (49%), Gaps = 6/369 (1%)

Query: 101 HSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           H+P    F   +    +++ Y T  +L  +M+   + P   T  I+   +   G+   + 
Sbjct: 61  HTPPIIEFGKILGYLVKMKHYPTAISLSRQMEVKGIEPNLVTLNILINCFCHLGQMAFSF 120

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGW 217
            +   + + G +    + NT++  LC + +V+++ +   KV    F+ + +SY  + NG 
Sbjct: 121 SVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQGFQMNQVSYGTLLNGL 180

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           C +  T  A+++L+ + DR   P++  Y+ ++ G  +   + +A+ FF EM  R    +V
Sbjct: 181 CKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIFPNV 240

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           +TY+T++ GF + G++  A ++ + M+   + P+V TYN +I  LCK+  V+ A  +  E
Sbjct: 241 ITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDALCKEGKVKEAKKLLAE 300

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M  KG   +  TYN V+ GLC +  +++A     +MK    +PN  TY  LI   C  G 
Sbjct: 301 MHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQPNKYTYTALIDGLCKGGR 360

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           ++   +LF+ +    C  ++ TYN++IS +      D  L       +M D G +P   T
Sbjct: 361 LKNAQKLFQHLLVKGCCIDVRTYNVMISGLCKEGMFDKALAMKS---KMEDNGCIPNAVT 417

Query: 458 FNRVLNGLL 466
           F+ ++  L 
Sbjct: 418 FDIIIRSLF 426



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/393 (26%), Positives = 183/393 (46%), Gaps = 22/393 (5%)

Query: 79  LWNHALKALHFFNILSYHPTYAHSPSSFDHA------------------IDLAARLRDYR 120
           L  H    + F  IL Y     H P++   +                  I+    L    
Sbjct: 58  LVRHTPPIIEFGKILGYLVKMKHYPTAISLSRQMEVKGIEPNLVTLNILINCFCHLGQMA 117

Query: 121 TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180
             ++++ ++  L   P   T   + +     G+  R++     +   G + +  S+ T+L
Sbjct: 118 FSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQGFQMNQVSYGTLL 177

Query: 181 DLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
           + LCK  +   A  L ++   +  + DV+ Y+ I +G C  K  N+A +   EM  RG+ 
Sbjct: 178 NGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIF 237

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           PN+ TY+ ++ G+  AGQ+  A+    EM  +    +V TY  ++      G++K A+ +
Sbjct: 238 PNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDALCKEGKVKEAKKL 297

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
              M + G    V TYN+++  LCK  +++ A  +F +M   G  PN  TY  +I GLC 
Sbjct: 298 LAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQPNKYTYTALIDGLCK 357

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419
            G ++ A +    +    C  +V+TYN++I   C  G  ++ L +  KM    C+PN  T
Sbjct: 358 GGRLKNAQKLFQHLLVKGCCIDVRTYNVMISGLCKEGMFDKALAMKSKMEDNGCIPNAVT 417

Query: 420 YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
           ++I+I S+F + ++D    A KLL  M+ +G +
Sbjct: 418 FDIIIRSLFEKDENDK---AEKLLHGMIAKGLL 447



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 134/285 (47%), Gaps = 3/285 (1%)

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           +I +  I      +K    A+ + ++M  +G+ PNL T NI++  +   GQ+  ++    
Sbjct: 65  IIEFGKILGYLVKMKHYPTAISLSRQMEVKGIEPNLVTLNILINCFCHLGQMAFSFSVLG 124

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           ++ K   + D +T  T++ G  + GE+KR+ +  D +V  G   +  +Y  ++  LCK  
Sbjct: 125 KILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIG 184

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
               A+ +   +  +   P+   Y+ +I GLC    + +A +F   M      PNV TY+
Sbjct: 185 ETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIFPNVITYS 244

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            LI  FC AG++     L  +M      PN+ TYNILI ++    K  +   A KLL EM
Sbjct: 245 TLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDALCKEGKVKE---AKKLLAEM 301

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
             +G      T+N VL+GL    N   A  +     + G  P ++
Sbjct: 302 HHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQPNKY 346



 Score = 43.1 bits (100), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 3/156 (1%)

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
           ++ V++ +  F  ++   + P    +  ++  L        A+    +M+    EPN+ T
Sbjct: 43  ENVVDDTVSQFNRLLLVRHTPPIIEFGKILGYLVKMKHYPTAISLSRQMEVKGIEPNLVT 102

Query: 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLI 444
            NILI  FC  G++     +  K+      P+  T N L+  + ++ +    L       
Sbjct: 103 LNILINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSL---HFHD 159

Query: 445 EMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           ++V +GF   + ++  +LNGL  IG    A ++LR+
Sbjct: 160 KVVAQGFQMNQVSYGTLLNGLCKIGETRCAVKLLRM 195


>gi|357449161|ref|XP_003594857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483905|gb|AES65108.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 126/458 (27%), Positives = 204/458 (44%), Gaps = 57/458 (12%)

Query: 50  STDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPS----- 104
           ST P+TL +     SLH  PQ +        +  L   H     S  P    SPS     
Sbjct: 5   STFPKTLLKH----SLHLKPQTLTLTFLSYSSSNLPHTHH----SLPPQIFKSPSNTSSH 56

Query: 105 ----------SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKA 154
                     SF   I+  +   D+ ++  L+H+MK  +    +K+F I+ + Y  A   
Sbjct: 57  KWGSYKLGDLSFYSLIENFSNSLDFTSLEQLLHQMKCENRVFIEKSFIIMFKAYGKAHLP 116

Query: 155 DRAVKIFLSM-HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVI 213
            +A+ +F  M  E  C+Q++ SFNT+L+++ +E   + A         +F   VI  N  
Sbjct: 117 QKALDLFHRMGAEFHCKQTVKSFNTVLNVVIQEGCFDLAL--------EFYNHVIDSNSF 168

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
           +N                      + PN  ++N+V+K   R G +++A   F  M  R C
Sbjct: 169 SN----------------------IQPNGLSFNLVIKALCRVGNVDQAVEVFRGMSDRNC 206

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
             D  TY+T++HG    G I  A ++ D M   G  P+   +N +I  LCKK  +  A  
Sbjct: 207 VADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPNPVAFNVLISALCKKGDLSRASK 266

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           + + M  KG +PN  TYN ++ GLC  G++++A+  + RM  ++C PN  T+  L+  F 
Sbjct: 267 LVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFV 326

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
             G    G+ +   +       N  +Y+ LIS +F   K +  +   +L  EMV++G  P
Sbjct: 327 KHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGM---QLWKEMVEKGCKP 383

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
               ++ +++GL   G    AKE L      G  P  F
Sbjct: 384 NTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSF 421



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 149/294 (50%), Gaps = 6/294 (2%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           +S  H + L  +L       +L++RM +    P   TF  + + +V  G+A   V++ +S
Sbjct: 284 NSLVHGLCLKGKLD---KAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVS 340

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKR 222
           + E G R +  S+++++  L KE K E    L+K    K  K + I Y+ + +G C   +
Sbjct: 341 LEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGK 400

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
            ++A E L EM ++G  PN  TY+ ++ GYF AG I +A   + EM    C    V Y+ 
Sbjct: 401 PDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSI 460

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           +++G    G++K A  V+  M++ G+   V  Y++MI   C    VE  + +F +M+   
Sbjct: 461 LINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHN 520

Query: 343 --YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
               P+  TYN+++   C    + RA++ +  M D  C+P+  T +I ++   D
Sbjct: 521 PKLQPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCDPDFITCDIFLKTLRD 574



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 172/335 (51%), Gaps = 6/335 (1%)

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
           ++ P   +F ++ +     G  D+AV++F  M +  C     +++T++  LC E ++++A
Sbjct: 170 NIQPNGLSFNLVIKALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEA 229

Query: 193 YNLFKVFR--GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250
            +L    +  G F  + +++NV+ +  C     ++A +++  M  +G  PN  TYN ++ 
Sbjct: 230 VSLLDEMQVEGTF-PNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVH 288

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
           G    G++++A      M   KC  + +T+ T+V GF   G       V   +   G   
Sbjct: 289 GLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRG 348

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           +  +Y+++I  L K+   E+ + +++EMV KG  PN+  Y+ +I GLC  G+ + A E++
Sbjct: 349 NEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYL 408

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
             MK+    PN  TY+ L+  + +AG+I + + ++++M    C  +   Y+ILI+ +   
Sbjct: 409 IEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKN 468

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            K  + L+  K   +M+ RG       ++ +++G 
Sbjct: 469 GKLKEALIVWK---QMLSRGIKLDVVAYSSMIHGF 500



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 166/351 (47%), Gaps = 5/351 (1%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           +P +F+  I    +  D      LV  M      P + T+  +       GK D+A+ + 
Sbjct: 244 NPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLL 303

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLV 220
             M  + C  +  +F T++D   K  +      +      K ++ +  SY+ + +G    
Sbjct: 304 NRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKE 363

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
            +    +++ KEMV++G  PN   Y+ ++ G  R G+ +EA  + +EMK +    +  TY
Sbjct: 364 GKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTY 423

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
           ++++ G+   G+I +A  V+  M +         Y+ +I  LCK   ++ A++V+++M+ 
Sbjct: 424 SSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEALIVWKQMLS 483

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM--KDDECEPNVQTYNILIRYFCDAGEI 398
           +G   +   Y+ +I G C+   +E+ ++   +M   + + +P+V TYNIL+  FC    +
Sbjct: 484 RGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQPDVVTYNILLNAFCTKNSV 543

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
            R +++   M    C P+  T +I + ++  R   D      + L E+V R
Sbjct: 544 SRAIDILNTMLDQGCDPDFITCDIFLKTL--RDNMDPPQDGREFLDELVVR 592



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 174/348 (50%), Gaps = 12/348 (3%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           +L+  M+     P    F ++       G   RA K+  +M   GC  +  ++N+++  L
Sbjct: 231 SLLDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGL 290

Query: 184 CKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           C + K++KA +L  ++   K   + I++  + +G+    R    + VL  + ++G   N 
Sbjct: 291 CLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNE 350

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            +Y+ ++ G F+ G+ E   + + EM ++ C+ + + Y+ ++ G    G+   A+     
Sbjct: 351 FSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIE 410

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M N G  P+  TY++++    +   +  AILV++EM       +   Y+++I GLC  G+
Sbjct: 411 MKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGK 470

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC-----LPNL 417
           ++ AL    +M     + +V  Y+ +I  FC+A  +E+G++LF +M   +C      P++
Sbjct: 471 LKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQM---LCHNPKLQPDV 527

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            TYNIL+++ F  K S  +  A  +L  M+D+G  P   T +  L  L
Sbjct: 528 VTYNILLNA-FCTKNS--VSRAIDILNTMLDQGCDPDFITCDIFLKTL 572



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 105/230 (45%), Gaps = 26/230 (11%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
            MK+    P   T++ +   Y  AG   +A+ ++  M ++ C      ++ +++ LCK  
Sbjct: 410 EMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNG 469

Query: 188 KVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV--DRGLNPNLT 243
           K+++A  ++K  + RG  K DV++Y+ + +G+C  +   + +++  +M+  +  L P++ 
Sbjct: 470 KLKEALIVWKQMLSRG-IKLDVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQPDVV 528

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG--------------- 288
           TYNI+L  +     +  A      M  + C+ D +T    +                   
Sbjct: 529 TYNILLNAFCTKNSVSRAIDILNTMLDQGCDPDFITCDIFLKTLRDNMDPPQDGREFLDE 588

Query: 289 -VVGEIKRAR-----NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
            VV  IKR R     N+ + M+   +LP  +T+   +Q LCK   V   I
Sbjct: 589 LVVRLIKRQRTVGASNIIEVMLQKFLLPKPSTWALAVQQLCKPMKVRKTI 638


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1113

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/437 (24%), Positives = 190/437 (43%), Gaps = 74/437 (16%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           S  +F   +    + RD  TV +L+  M+SL L P   T+ I       AG+ D A +I 
Sbjct: 228 SLKTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIM 287

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF------------------------- 196
             M + GC   + ++  ++D LC   K++ A  LF                         
Sbjct: 288 KRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDC 347

Query: 197 ------KVFRGKFKA-----DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
                 K F  + +A     DVI++ ++ N  C     ++A  +L  M  +G+ PNL TY
Sbjct: 348 GDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTY 407

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           N ++ G  R  ++++A   F  M+         TY   +  +G  G   +A   F+ M  
Sbjct: 408 NTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKI 467

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G+ P++   NA +  L +   +  A ++F  +   G  P+S TYN++++     G+++ 
Sbjct: 468 RGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDE 527

Query: 366 ALEFVGRMKDDECEPN-----------------------------------VQTYNILIR 390
           A+E +  M +++CEP+                                   V TYN LI 
Sbjct: 528 AIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIA 587

Query: 391 YFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450
                G+++R +ELF  M    C PN  T+N ++  +    K+D++ +A K+L +M    
Sbjct: 588 GLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLC---KNDEVDLALKMLYKMTTMN 644

Query: 451 FMPRKFTFNRVLNGLLL 467
            MP   TFN +++GL++
Sbjct: 645 CMPDVLTFNTIIHGLVI 661



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 165/335 (49%), Gaps = 4/335 (1%)

Query: 130  KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV 189
            K L + PT +++  + E ++     + A  +F  M   GC   + ++N +LD   K  K+
Sbjct: 782  KELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKI 841

Query: 190  EKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
             + + L+ ++     K + I++N+I          +KAL++  ++V    +P   TY  +
Sbjct: 842  NELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPL 901

Query: 249  LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
            L G  ++G++EEA   F EM    C  +   Y  +++GFG  G++  A  +F  MV  G+
Sbjct: 902  LDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGI 961

Query: 309  LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
             P + +Y +++  LC+   V++A+  FE++   G   +S  YN++I GL  +  +E AL 
Sbjct: 962  RPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALT 1021

Query: 369  FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
                M+     P++ TYN LI     AG +E+  +L+E++      PN+ TYN LI    
Sbjct: 1022 LYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYS 1081

Query: 429  VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
            +   SD      K    M+  G  P   TF ++ N
Sbjct: 1082 MSGNSDSAYAVYK---RMMVGGCSPNTGTFAQLPN 1113



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 164/349 (46%), Gaps = 3/349 (0%)

Query: 75   IIKRLWNH--ALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSL 132
            IIK L  H  AL A   F   +       +  S++  I+    + +    W L   MK+ 
Sbjct: 760  IIKVLCKHKQALVAQSVFIRFTKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNA 819

Query: 133  SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
               P   T+ ++ + +  +GK +   +++  M    C+ +  + N I+  L K   ++KA
Sbjct: 820  GCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKA 879

Query: 193  YNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
             +LF  +  G F     +Y  + +G     R  +A E+ +EMVD G  PN   YNI++ G
Sbjct: 880  LDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILING 939

Query: 252  YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
            + + G +  A   F  M +     D+ +YT++V      G +  A + F+ +   G+   
Sbjct: 940  FGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLD 999

Query: 312  VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
               YN MI  L +   +E A+ +++EM  +G  P+  TYN +I  L   G +E+A +   
Sbjct: 1000 SIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYE 1059

Query: 372  RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
             ++    EPNV TYN LIR +  +G  +    ++++M  G C PN  T+
Sbjct: 1060 ELQFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPNTGTF 1108



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 112/402 (27%), Positives = 181/402 (45%), Gaps = 38/402 (9%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           W +  R+K + L PT  T+  +       G+  RA+++F SM  +GC  +  +FNTILD 
Sbjct: 564 WKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDC 623

Query: 183 LCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           LCK  +V+ A   L+K+       DV+++N I +G  + KR + A+ +  +M  + L P+
Sbjct: 624 LCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQM-KKMLTPD 682

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKR-KCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
             T   +L G  + G +E+A++   +   R    +D   +  ++ G       ++     
Sbjct: 683 CVTLCTLLPGVVKNGLMEDAFKIAEDFVHRLGVYVDRRFWEDLMGGILTQAGTEKTILFG 742

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK-GYMPNSTTYNVVIRGLCH 359
           D +V G V    +    +I+VLCK      A  VF     + G  P   +YN +I G   
Sbjct: 743 DRLVCGRVCKDGSVLMPIIKVLCKHKQALVAQSVFIRFTKELGVKPTLESYNFLIEGFLG 802

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419
               E A      MK+  C P+V TYN+L+     +G+I    EL+E+M    C PN  T
Sbjct: 803 VHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTIT 862

Query: 420 YNILISSMFVRKKS---------------------------DDLLVAGKL------LIEM 446
           +NI+I+++ V+  S                           D LL +G+L        EM
Sbjct: 863 HNIIIANL-VKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEM 921

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           VD G  P    +N ++NG    G+   A E+ +   R G  P
Sbjct: 922 VDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRP 963



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 155/339 (45%), Gaps = 8/339 (2%)

Query: 98  TYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRA 157
           TY      F    DL  R++++   W+    M++    P   TF I+      AG  D A
Sbjct: 336 TYITMLDKFSDCGDLG-RVKEF---WS---EMEADGYAPDVITFTILVNALCKAGNIDEA 388

Query: 158 VKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANG 216
             +   M + G   +L+++NT++  L +  +++ A +LF             +Y +  + 
Sbjct: 389 FHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDF 448

Query: 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID 276
           +    R++KALE  ++M  RG+ PN+   N  L      G++ EA   F  +K      D
Sbjct: 449 YGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPD 508

Query: 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE 336
            VTY  ++  +   G++  A  +   M      P +   N++I  L K   V+ A  +F 
Sbjct: 509 SVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFC 568

Query: 337 EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
            +      P   TYN +I GL   G+++RA+E    M  + C PN  T+N ++   C   
Sbjct: 569 RLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKND 628

Query: 397 EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
           E++  L++  KM +  C+P++ T+N +I  + + K+  D
Sbjct: 629 EVDLALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVSD 667



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 148/293 (50%), Gaps = 6/293 (2%)

Query: 85  KALHFFNILSYHPTYA--HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           +A H  +++         H+ ++    +    RL D      L + M++L + PT  T+ 
Sbjct: 387 EAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDD---ALDLFNNMETLGVVPTAYTYI 443

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK 202
           +  + Y  +G++D+A++ F  M   G   ++ + N  L  L +  ++ +A  +F   +  
Sbjct: 444 LFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSN 503

Query: 203 FKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
             A D ++YN++   +    + ++A+E+L +M +    P++   N ++   ++AG+++EA
Sbjct: 504 GLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEA 563

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
           W+ F  +K  K    VVTY T++ G G  G+++RA  +F  M   G  P+  T+N ++  
Sbjct: 564 WKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDC 623

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           LCK D V+ A+ +  +M     MP+  T+N +I GL     +  A+    +MK
Sbjct: 624 LCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQMK 676



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/434 (22%), Positives = 186/434 (42%), Gaps = 39/434 (8%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAA---RLRDYRTVWTLVH--------------- 127
           A  +FN ++  P   H+  + +H +++     R+ D   V+ L+                
Sbjct: 107 AFSYFNSVAEMPFVVHTTETCNHMLEILRIHRRVGDMVVVFNLMQNQIIKRDLNTYLIIF 166

Query: 128 ---------RMKSLSLGPTQKT-FAIIAERY-------VSAGKADRAVKIFLSMHEHGCR 170
                    R    + G  ++  F + A  Y       + +G    A++++  M   G +
Sbjct: 167 KGLFIRGGLRQTPFAFGKMREAGFHLNAYSYNGLIHLLLQSGLCREALEMYRRMVLEGLK 226

Query: 171 QSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEV 229
            SL +F+ ++    K +  E   +L +       K ++ +Y +         R ++A  +
Sbjct: 227 PSLKTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRI 286

Query: 230 LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289
           +K M D G  P++ TY +++     AG++++A   F++MK    + D VTY T++  F  
Sbjct: 287 MKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSD 346

Query: 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
            G++ R +  +  M   G  P V T+  ++  LCK  +++ A  + + M  +G +PN  T
Sbjct: 347 CGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHT 406

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
           YN +I GL     ++ AL+    M+     P   TY + I ++  +G  ++ LE FEKM 
Sbjct: 407 YNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMK 466

Query: 410 SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
                PN+   N   +S++   +   L  A  +   +   G  P   T+N ++      G
Sbjct: 467 IRGIAPNIVACN---ASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAG 523

Query: 470 NQGLAKEILRLQSR 483
               A E+L   S 
Sbjct: 524 QVDEAIELLSDMSE 537



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 153/315 (48%), Gaps = 4/315 (1%)

Query: 166  EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTN 224
            E G + +L S+N +++        E A+NLF   +    A DV +YN++ +      + N
Sbjct: 783  ELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKIN 842

Query: 225  KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
            +  E+ ++M+     PN  T+NI++    ++  +++A   F ++          TY  ++
Sbjct: 843  ELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLL 902

Query: 285  HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
             G    G ++ A+ +F+ MV+ G  P+ A YN +I    K   V  A  +F+ MV +G  
Sbjct: 903  DGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIR 962

Query: 345  PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
            P+  +Y  ++  LC  G ++ AL +  ++K      +   YN++I     +  IE  L L
Sbjct: 963  PDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTL 1022

Query: 405  FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
            +++M S    P+L TYN LI ++ V    +    AGKL  E+   G  P  FT+N ++ G
Sbjct: 1023 YDEMQSRGINPDLFTYNSLILNLGVAGMVEQ---AGKLYEELQFIGLEPNVFTYNALIRG 1079

Query: 465  LLLIGNQGLAKEILR 479
              + GN   A  + +
Sbjct: 1080 YSMSGNSDSAYAVYK 1094



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 113/434 (26%), Positives = 185/434 (42%), Gaps = 45/434 (10%)

Query: 83   ALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
            ALK L+    ++  P    + ++  H + +  R+ D   +W L H+MK + L P   T  
Sbjct: 633  ALKMLYKMTTMNCMPD-VLTFNTIIHGLVIEKRVSD--AIW-LFHQMKKM-LTPDCVTLC 687

Query: 143  IIAERYVSAGKADRAVKIFLS-MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF--KVF 199
             +    V  G  + A KI    +H  G       +  ++  +  +   EK   LF  ++ 
Sbjct: 688  TLLPGVVKNGLMEDAFKIAEDFVHRLGVYVDRRFWEDLMGGILTQAGTEKTI-LFGDRLV 746

Query: 200  RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV-DRGLNPNLTTYNIVLKGYFRAGQI 258
             G+   D      I    C  K+   A  V      + G+ P L +YN +++G+      
Sbjct: 747  CGRVCKDGSVLMPIIKVLCKHKQALVAQSVFIRFTKELGVKPTLESYNFLIEGFLGVHND 806

Query: 259  EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
            E AW  F EMK   C  DV TY  ++   G  G+I     +++ M+     P+  T+N +
Sbjct: 807  EMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNII 866

Query: 319  IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
            I  L K +S++ A+ +F ++V   + P   TY  ++ GL  +G +E A E    M D  C
Sbjct: 867  IANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGC 926

Query: 379  EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL- 437
             PN   YNILI  F   G++    ELF++M      P+L +Y  L+  +    + DD L 
Sbjct: 927  RPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALH 986

Query: 438  --------------VAGKLLI-----------------EMVDRGFMPRKFTFNRVLNGLL 466
                          +A  L+I                 EM  RG  P  FT+N +   +L
Sbjct: 987  YFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSL---IL 1043

Query: 467  LIGNQGLAKEILRL 480
             +G  G+ ++  +L
Sbjct: 1044 NLGVAGMVEQAGKL 1057



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 114/472 (24%), Positives = 194/472 (41%), Gaps = 81/472 (17%)

Query: 81  NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKT 140
           + AL+      I    P      +S  +++    RLR+ + ++   +R+KS  L P   T
Sbjct: 456 DKALETFEKMKIRGIAPNIVACNASL-YSLAEMGRLREAKVIF---NRLKSNGLAPDSVT 511

Query: 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR 200
           + ++ + Y  AG+ D A+++   M E+ C   +   N++++ L K  +V++A+ +F   +
Sbjct: 512 YNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLK 571

Query: 201 G-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN------------------ 241
             K    V++YN +  G     +  +A+E+   M   G  PN                  
Sbjct: 572 DMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVD 631

Query: 242 -----------------LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
                            + T+N ++ G     ++ +A   F +MKK     D VT  T++
Sbjct: 632 LALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQMKKMLTP-DCVTLCTLL 690

Query: 285 HGFGVVGEIKRARNVFDGMVN---------------GGVLPSVATYNA------------ 317
            G    G ++ A  + +  V+               GG+L    T               
Sbjct: 691 PGVVKNGLMEDAFKIAEDFVHRLGVYVDRRFWEDLMGGILTQAGTEKTILFGDRLVCGRV 750

Query: 318 ---------MIQVLCKKDSVENAILVFEEMVGK-GYMPNSTTYNVVIRGLCHTGEMERAL 367
                    +I+VLCK      A  VF     + G  P   +YN +I G       E A 
Sbjct: 751 CKDGSVLMPIIKVLCKHKQALVAQSVFIRFTKELGVKPTLESYNFLIEGFLGVHNDEMAW 810

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
                MK+  C P+V TYN+L+     +G+I    EL+E+M    C PN  T+NI+I+++
Sbjct: 811 NLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANL 870

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
               KS+ L  A  L  ++V   F P   T+  +L+GLL  G    AKE+  
Sbjct: 871 V---KSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFE 919



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 128/268 (47%), Gaps = 3/268 (1%)

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
           +R    + V   M ++ +  +L TY I+ KG F  G + +    F +M++    ++  +Y
Sbjct: 138 RRVGDMVVVFNLMQNQIIKRDLNTYLIIFKGLFIRGGLRQTPFAFGKMREAGFHLNAYSY 197

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
             ++H     G  + A  ++  MV  G+ PS+ T++A++    K+   E    + EEM  
Sbjct: 198 NGLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEMES 257

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
            G  PN  TY + IR L   G ++ A   + RM+DD C P+V TY +LI   C AG+++ 
Sbjct: 258 LGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDD 317

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
            +ELF KM +    P+  TY  ++          DL    +   EM   G+ P   TF  
Sbjct: 318 AMELFVKMKASSHKPDRVTYITMLDKF---SDCGDLGRVKEFWSEMEADGYAPDVITFTI 374

Query: 461 VLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           ++N L   GN   A  +L +  + G LP
Sbjct: 375 LVNALCKAGNIDEAFHLLDVMRKQGVLP 402



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 57/276 (20%), Positives = 110/276 (39%), Gaps = 51/276 (18%)

Query: 45   SLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALH-FFNILSYHPTYAHSP 103
             +I +S  P T+T  +          ++  ++K   N   KAL  F++++S    ++ +P
Sbjct: 850  QMICSSCKPNTITHNI----------IIANLVKS--NSLDKALDLFYDLVS--GDFSPTP 895

Query: 104  SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
             ++   +D   +         L   M      P    + I+   +   G  + A ++F  
Sbjct: 896  CTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKR 955

Query: 164  MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKR 222
            M   G R  L S+ +++  LC+  +V+ A + F K+ +     D I+YN++ +G     R
Sbjct: 956  MVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHR 1015

Query: 223  TNKALEVLKEMVDRGLNP-----------------------------------NLTTYNI 247
              +AL +  EM  RG+NP                                   N+ TYN 
Sbjct: 1016 IEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNA 1075

Query: 248  VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +++GY  +G  + A+  +  M    C  +  T+  +
Sbjct: 1076 LIRGYSMSGNSDSAYAVYKRMMVGGCSPNTGTFAQL 1111


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 188/397 (47%), Gaps = 27/397 (6%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAAR----LRDYRTVWTLVHRMKSLSLGPTQKTF 141
           A+ FF+       Y H   S++H +D+  +     R  +    L+H   S    P   TF
Sbjct: 10  AIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCS----PNLVTF 65

Query: 142 AIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR- 200
            I+      AG+A RA++   ++ E      +  FN ++  L K+   ++A  LF+    
Sbjct: 66  KILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMES 125

Query: 201 GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN--PNLTTYNIVLK-GYFRAGQ 257
            +   D+ +YN + +G C      KA E+L+EM+ RG    P++ TYN ++  G  + G 
Sbjct: 126 SRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGD 185

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           +EEA      MK      DV+TY +I+H   V G +  A  +   M      P + T+N 
Sbjct: 186 VEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTM---SCSPDLVTFNT 242

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           ++   CK   +  A+ V EEM  +  +P+  TY +++ GLC  G+++ A   +  +    
Sbjct: 243 LLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQG 302

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL---------PNLDTYNILISSMF 428
             P+V  Y  L+   C +GEIE   +L ++M +   L         P L TYNI++  + 
Sbjct: 303 YIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLI 362

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
              K   +  A  L+ ++V RG++P   T+N +++GL
Sbjct: 363 ---KDGSISKAVSLISDLVARGYVPDVVTYNTLIDGL 396



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 156/324 (48%), Gaps = 14/324 (4%)

Query: 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYN 211
           G  + A++I   M   G    + ++N+I+  LC   +V +A  + K        D++++N
Sbjct: 184 GDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTM--SCSPDLVTFN 241

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
            + +G+C      +ALEVL+EM    + P++ TY I++ G  R GQ++ A+    E+ ++
Sbjct: 242 TLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQ 301

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRA---------RNVFDGMVNGGVLPSVATYNAMIQVL 322
               DV+ YT++V G    GEI+ A         R +   MV+  ++P + TYN ++  L
Sbjct: 302 GYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGL 361

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
            K  S+  A+ +  ++V +GY+P+  TYN +I GLC    +  A +    M    C PN 
Sbjct: 362 IKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPND 421

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
            T   ++   C  G ++    L  +M      PN+  Y  LI  +    + DD  V   +
Sbjct: 422 VTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACV---V 478

Query: 443 LIEMVDRGFMPRKFTFNRVLNGLL 466
           L  M  +G     F + +++  ++
Sbjct: 479 LDAMRGQGVALDDFAYRKLIVSMI 502



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 97/294 (32%), Positives = 150/294 (51%), Gaps = 19/294 (6%)

Query: 203 FKADVISYNVIANGWCLVK-----RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
           +K DV SYN + +   LVK     RT K   V K+++  G +PNL T+ I+++G  +AGQ
Sbjct: 23  YKHDVHSYNHLLD--ILVKSGHQFRTGK---VYKDLLHSGCSPNLVTFKILIRGNCKAGQ 77

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
              A  F   + +     DV  +  ++HG    G   +A  +F+ M +  V P + TYN 
Sbjct: 78  ATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNT 137

Query: 318 MIQVLCKKDSVENAILVFEEMVGKG--YMPNSTTYNVVIR-GLCHTGEMERALEFVGRMK 374
           +I  LCK  ++E A  + EEM+ +G    P+  TYN +I  G+C  G++E ALE +  MK
Sbjct: 138 VISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVEEALEILDGMK 197

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
                P+V TYN +I   C AG +    E+ + M    C P+L T+N L+       K+ 
Sbjct: 198 LAGPAPDVITYNSIIHALCVAGRVVEAAEILKTMS---CSPDLVTFNTLLDGFC---KAG 251

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            L  A ++L EM     +P   T+  ++NGL  +G   +A  +L    R G +P
Sbjct: 252 MLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIP 305



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 156/331 (47%), Gaps = 18/331 (5%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           +S  HA+ +A R+ +   +      +K++S  P   TF  + + +  AG   RA+++   
Sbjct: 209 NSIIHALCVAGRVVEAAEI------LKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEE 262

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWC---- 218
           M        + ++  +++ LC+  +V+ A+ L + + R  +  DVI+Y  + +G C    
Sbjct: 263 MCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGE 322

Query: 219 ------LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
                 LVK  + A E+L EMV   + P L TYNIVL G  + G I +A     ++  R 
Sbjct: 323 IEEAHKLVKEMS-AREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARG 381

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
              DVVTY T++ G      ++ A ++ D M + G  P+  T  +++  LC+   V++A 
Sbjct: 382 YVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDDAW 441

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
            +  EM  K + PN   Y  +I GLC +  M+ A   +  M+      +   Y  LI   
Sbjct: 442 SLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAMRGQGVALDDFAYRKLIVSM 501

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
              G +   + ++++M +   LP+  T   L
Sbjct: 502 IHGGRVAEAMAMYDEMVARGFLPDGSTSKTL 532



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 120/255 (47%), Gaps = 9/255 (3%)

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           G   ++ +YN +L    ++G      + + ++    C  ++VT+  ++ G    G+  RA
Sbjct: 22  GYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQATRA 81

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
                 +    V P V  +N +I  L K  + + A+ +FE M      P+  TYN VI G
Sbjct: 82  LEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVISG 141

Query: 357 LCHTGEMERALEFVGRM--KDDECEPNVQTYNILIRY-FCDAGEIERGLELFEKMGSGVC 413
           LC +G +E+A E +  M  +  +  P++ TYN LI    C  G++E  LE+ + M     
Sbjct: 142 LCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVEEALEILDGMKLAGP 201

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGL 473
            P++ TYN +I ++ V  +   ++ A ++L  M      P   TFN +L+G    G    
Sbjct: 202 APDVITYNSIIHALCVAGR---VVEAAEILKTM---SCSPDLVTFNTLLDGFCKAGMLPR 255

Query: 474 AKEILRLQSRCGRLP 488
           A E+L    R   LP
Sbjct: 256 ALEVLEEMCRENILP 270



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 59/147 (40%), Gaps = 1/147 (0%)

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           Y     +++  ID   +    R    L   M SL   P   T   +       G+ D A 
Sbjct: 382 YVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDDAW 441

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGW 217
            + + M       ++  + +++D LCK  +++ A  +    RG+  A D  +Y  +    
Sbjct: 442 SLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAMRGQGVALDDFAYRKLIVSM 501

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTT 244
               R  +A+ +  EMV RG  P+ +T
Sbjct: 502 IHGGRVAEAMAMYDEMVARGFLPDGST 528


>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
          Length = 793

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/425 (25%), Positives = 203/425 (47%), Gaps = 40/425 (9%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           ++++  +   ARL   +    +V  M +    P   T+ ++A     AGK D A K+   
Sbjct: 280 ATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDE 339

Query: 164 MHEHG-CRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVK 221
           M + G     + ++NT++D   K ++   A NL +  R K  K+ ++++N+I  G C   
Sbjct: 340 MEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREG 399

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
           +  +AL  L+ M + GL P++ TYN ++    +AG + +A+    EM +   ++D  T  
Sbjct: 400 QLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLN 459

Query: 282 TIVH----------------------------GFGVVGEI-------KRARNVFDGMVNG 306
           T+++                             +G V          + A  ++D M+  
Sbjct: 460 TLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKR 519

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
            + PS++TYN +I+ L     +  AI    E++  G +P+ TTYN++I   C  G++E+A
Sbjct: 520 KLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKA 579

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
            +F  +M ++  +P+V T N L+   C  G +E+ ++LFE         ++ TYN LI +
Sbjct: 580 FQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVITYNTLIQA 639

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGR 486
           +    K +D+  A +   +M  RG  P  FT+N +L+ L   G    A+++L   +  G+
Sbjct: 640 LC---KDNDVDTALRFFADMEVRGLQPDVFTYNVLLSALSEAGRSVEAQKMLHKLNESGK 696

Query: 487 LPRQF 491
           L  +F
Sbjct: 697 LYGRF 701



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 170/348 (48%), Gaps = 5/348 (1%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           TL+ RMK   + PT+ T+  +   Y   G   +A  +  +M   G    L ++N +   L
Sbjct: 265 TLLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGL 324

Query: 184 CKEKKVEKAYNLFKVFR--GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           C+  KV++A+ L       G    DV++YN + +     +R++ AL +L+EM ++G+  +
Sbjct: 325 CQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSS 384

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           L T+NI++KG  R GQ+EEA      M +     DV+TY T++      G + +A  + D
Sbjct: 385 LVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMD 444

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            MV  G+     T N ++  LCK+   E A  +      +G++P+  +Y  V+       
Sbjct: 445 EMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEY 504

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
           + E AL     M   +  P++ TYN LI+     G++   ++   ++     +P+  TYN
Sbjct: 505 KPEPALCLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYN 564

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
           I+I +     K  DL  A +   +MV+  F P   T N ++NGL L G
Sbjct: 565 IIIHAYC---KEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYG 609



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 173/358 (48%), Gaps = 4/358 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  +D   + +       L+  M+   +  +  T  II +     G+ + A+     M
Sbjct: 352 TYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMM 411

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
            E G    + ++NT++D  CK   V KA+ L  ++ R   K D  + N +    C  KR 
Sbjct: 412 TEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRY 471

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A E+L+    RG  P+  +Y  V+  YF+  + E A   + EM KRK    + TY T+
Sbjct: 472 EEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTL 531

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G   +G++  A +  + ++  G++P   TYN +I   CK+  +E A     +MV   +
Sbjct: 532 IKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSF 591

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+  T N ++ GLC  G +E+A++      +   + +V TYN LI+  C   +++  L 
Sbjct: 592 KPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVITYNTLIQALCKDNDVDTALR 651

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
            F  M      P++ TYN+L+S++    +S   + A K+L ++ + G +  +F +  +
Sbjct: 652 FFADMEVRGLQPDVFTYNVLLSALSEAGRS---VEAQKMLHKLNESGKLYGRFFYPSI 706



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 143/329 (43%), Gaps = 41/329 (12%)

Query: 200 RGKFKADVISYNVIANGWCLVKRTN--KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
           RG  +  + + N + +       T+   +L+    ++   L+PN  T+N+++  +   G 
Sbjct: 165 RGCVRPSLQAANAVLSALARSPSTSPQASLDAFHSLIALRLHPNHYTFNLLVHTHCSKGT 224

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           + +A     +M+      D VTY T+++     G +  AR +   M   G++P+ ATYN 
Sbjct: 225 LADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTLLARMKKEGIVPTRATYNT 284

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG----------EMER-- 365
           ++    +   ++ A  V E M   G+ P+  TYNV+  GLC  G          EME+  
Sbjct: 285 LVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEQLG 344

Query: 366 ------------------------ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
                                   AL  +  M++   + ++ T+NI+++  C  G++E  
Sbjct: 345 IVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEA 404

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
           L   E M      P++ TYN LI +     K+ ++  A  L+ EMV  G     FT N +
Sbjct: 405 LGRLEMMTEEGLTPDVITYNTLIDASC---KAGNVAKAFVLMDEMVRSGLKMDTFTLNTL 461

Query: 462 LNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
           L  L        A+E+LR   + G +P +
Sbjct: 462 LYNLCKEKRYEEAEELLRAPPQRGFVPDE 490



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 134/308 (43%), Gaps = 14/308 (4%)

Query: 92  ILSYHPTYAHSPSSFDHAIDLAARLRDYRT--VWTLVHRMKSLSLGPTQKTFAIIAERYV 149
           +L   P     P    +   +AA  ++Y+      L   M    L P+  T+  + +   
Sbjct: 477 LLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKGLS 536

Query: 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVI 208
           + GK   A+     + E G      ++N I+   CKE  +EKA+    K+    FK DV+
Sbjct: 537 TMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVV 596

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           + N + NG CL  R  KA+++ +  V++G   ++ TYN +++   +   ++ A RFF +M
Sbjct: 597 TCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVITYNTLIQALCKDNDVDTALRFFADM 656

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL------PSVATYNAMIQVL 322
           + R  + DV TY  ++      G    A+ +   +   G L      PS+ +    ++  
Sbjct: 657 EVRGLQPDVFTYNVLLSALSEAGRSVEAQKMLHKLNESGKLYGRFFYPSIKSSVEAVET- 715

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
            K   V++ I    E VG     +  +YN  I+ LC  G+++ A   +  M       + 
Sbjct: 716 GKDPEVKSDI----ESVGNTQGDDQESYNKYIKELCIGGQLKEAKAVLDEMMQKGMSVDN 771

Query: 383 QTYNILIR 390
            TY  L+ 
Sbjct: 772 STYITLME 779


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/387 (28%), Positives = 183/387 (47%), Gaps = 6/387 (1%)

Query: 81  NHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQ 138
           N + +AL   ++++        P   S+   I+   +  D    ++  H M    + P  
Sbjct: 172 NRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDV 231

Query: 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV 198
            T+  I      A   D+A+++  +M ++G      ++N+IL   C   + ++A    K 
Sbjct: 232 VTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKK 291

Query: 199 FRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
            R    + DV++Y+++ +  C   R  +A ++   M  RGL P +TTY  +L+GY   G 
Sbjct: 292 MRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGA 351

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           + E       M +     D   ++ ++  +   G++ +A  VF  M   G+ P+  TY A
Sbjct: 352 LVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGA 411

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           +I +LCK   VE+A+L FE+M+ +G  P +  YN +I GLC   + ERA E +  M D  
Sbjct: 412 VIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRG 471

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
              N   +N +I   C  G +    +LFE M      PN+ TYN LI+   +  K D+  
Sbjct: 472 ICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDE-- 529

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNG 464
            A KLL  MV  G  P   T++ ++NG
Sbjct: 530 -AMKLLSGMVSVGLKPNTVTYSTLING 555



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 183/350 (52%), Gaps = 15/350 (4%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P    F+I+   Y   GK D+A+ +F  M + G   +  ++  ++ +LCK  +VE A   
Sbjct: 369 PDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLY 428

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F ++         I YN + +G C   +  +A E++ EM+DRG+  N   +N ++  + +
Sbjct: 429 FEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCK 488

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G++ E+ + F  M +   + +V+TY T+++G+ + G++  A  +  GMV+ G+ P+  T
Sbjct: 489 EGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVT 548

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y+ +I   CK   +E+A+++F+EM   G  P+  TYN++++GL  T     A E   R+ 
Sbjct: 549 YSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRIT 608

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLD----TYNILISSMFVR 430
           +   +  + TYNI++   C     +  L++F+ +    CL +L     T+NI+I ++   
Sbjct: 609 ESGTQIELSTYNIILHGLCKNKLTDDALQMFQNL----CLMDLKLEARTFNIMIDALLKV 664

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
            ++D+   A  L +     G +P  +T+  +   ++    QGL +E+ +L
Sbjct: 665 GRNDE---AKDLFVAFSSNGLVPNYWTYRLMAENII---GQGLLEELDQL 708



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 110/393 (27%), Positives = 188/393 (47%), Gaps = 11/393 (2%)

Query: 103 PSSFDHAIDLAARLRDYRT--VWTLVHRMKSLSLG---PTQKTFAIIAERYVSAGKADRA 157
           P+ F + I L     + R+     L+H M     G   P   ++  +   +   G +D+A
Sbjct: 156 PNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKA 215

Query: 158 VKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANG 216
              +  M + G    + ++N+I+  LCK + ++KA  +     +     D ++YN I +G
Sbjct: 216 YSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHG 275

Query: 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID 276
           +C   +  +A+  LK+M   G+ P++ TY++++    + G+  EA + F  M KR  + +
Sbjct: 276 YCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPE 335

Query: 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE 336
           + TY T++ G+   G +     + D MV  G+ P    ++ +I    K+  V+ A+LVF 
Sbjct: 336 ITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFS 395

Query: 337 EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
           +M  +G  PN+ TY  VI  LC +G +E A+ +  +M D+   P    YN LI   C   
Sbjct: 396 KMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCN 455

Query: 397 EIERGLEL-FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
           + ER  EL  E +  G+CL N   +N +I S     K   ++ + KL   MV  G  P  
Sbjct: 456 KWERAEELILEMLDRGICL-NTIFFNSIIDS---HCKEGRVIESEKLFELMVRIGVKPNV 511

Query: 456 FTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            T+N ++NG  L G    A ++L      G  P
Sbjct: 512 ITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKP 544



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 177/352 (50%), Gaps = 17/352 (4%)

Query: 117 RDYRTVWT-LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ---S 172
            D R V+  L+ R +  S+    +  A +A    +A     AV  +  M   G  +    
Sbjct: 32  EDARHVFDELLRRGRGASIYGLNRALADVARDSPAA-----AVSRYNRMARAGADEVTPD 86

Query: 173 LNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNKALE-VL 230
           L ++  ++   C+  +++  +  L  V +  F+ D I++  +  G C  KRT+ A++ VL
Sbjct: 87  LCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVL 146

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK---CEIDVVTYTTIVHGF 287
           + M + G  PN+ +YNI+LKG     + +EA      M   +      DVV+YTT+++GF
Sbjct: 147 RRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGF 206

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
              G+  +A + +  M++ G+LP V TYN++I  LCK  +++ A+ V   MV  G MP+ 
Sbjct: 207 FKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDC 266

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
            TYN ++ G C +G+ + A+ F+ +M+ D  EP+V TY++L+ Y C  G      ++F+ 
Sbjct: 267 MTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDS 326

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
           M      P + TY  L+     +     L+    LL  MV  G  P  + F+
Sbjct: 327 MTKRGLKPEITTYGTLLQGYATKGA---LVEMHGLLDLMVRNGIHPDHYVFS 375



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 173/342 (50%), Gaps = 4/342 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
            + +M+S  + P   T++++ +     G+   A KIF SM + G +  + ++ T+L    
Sbjct: 288 FLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYA 347

Query: 185 KEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            +  + + + L  +  R     D   ++++   +    + ++A+ V  +M  +GLNPN  
Sbjct: 348 TKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAV 407

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY  V+    ++G++E+A  +F +M         + Y +++HG     + +RA  +   M
Sbjct: 408 TYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEM 467

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           ++ G+  +   +N++I   CK+  V  +  +FE MV  G  PN  TYN +I G C  G+M
Sbjct: 468 LDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKM 527

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A++ +  M     +PN  TY+ LI  +C    +E  L LF++M S    P++ TYNI+
Sbjct: 528 DEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNII 587

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           +  +F  +++     A +L + + + G      T+N +L+GL
Sbjct: 588 LQGLFQTRRT---AAAKELYVRITESGTQIELSTYNIILHGL 626



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 145/305 (47%), Gaps = 1/305 (0%)

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186
            +M    L P    +  +     +  K +RA ++ L M + G   +   FN+I+D  CKE
Sbjct: 430 EQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKE 489

Query: 187 KKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
            +V ++  LF++  R   K +VI+YN + NG+CL  + ++A+++L  MV  GL PN  TY
Sbjct: 490 GRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTY 549

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           + ++ GY +  ++E+A   F EM+      D++TY  I+ G         A+ ++  +  
Sbjct: 550 STLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITE 609

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G    ++TYN ++  LCK    ++A+ +F+ +        + T+N++I  L   G  + 
Sbjct: 610 SGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDE 669

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           A +       +   PN  TY ++       G +E   +LF  M    C  +    N ++ 
Sbjct: 670 AKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVR 729

Query: 426 SMFVR 430
            +  R
Sbjct: 730 ELLQR 734



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/396 (23%), Positives = 170/396 (42%), Gaps = 43/396 (10%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           +  + R  +  + P   T+ I+      AG+ D       ++ + G R    +F  +L  
Sbjct: 72  YNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKG 131

Query: 183 LCKEKKVEKAYNLF--KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR---G 237
           LC +K+   A ++   ++       +V SYN++  G C   R+ +ALE+L  M D    G
Sbjct: 132 LCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGG 191

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
             P++ +Y  V+ G+F+ G  ++A+  + EM  R    DVVTY +I+        + +A 
Sbjct: 192 SPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAM 251

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
            V + MV  GV+P   TYN+++   C     + AI   ++M   G  P+  TY++++  L
Sbjct: 252 EVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYL 311

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTY-------------------------------- 385
           C  G    A +    M     +P + TY                                
Sbjct: 312 CKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDH 371

Query: 386 ---NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
              +ILI  +   G++++ + +F KM      PN  TY  +I  +    + +D ++    
Sbjct: 372 YVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAML---Y 428

Query: 443 LIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
             +M+D G  P    +N +++GL        A+E++
Sbjct: 429 FEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELI 464



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 123/266 (46%), Gaps = 1/266 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L   M  + + P   T+  +   Y  AGK D A+K+   M   G + +  +++T+++  C
Sbjct: 498 LFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYC 557

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  ++E A  LFK         D+I+YN+I  G    +RT  A E+   + + G    L+
Sbjct: 558 KISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELS 617

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYNI+L G  +    ++A + F  +     +++  T+  ++     VG    A+++F   
Sbjct: 618 TYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAF 677

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            + G++P+  TY  M + +  +  +E    +F  M   G   +S   N ++R L   GE+
Sbjct: 678 SSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEI 737

Query: 364 ERALEFVGRMKDDECEPNVQTYNILI 389
            RA  ++  + +        T ++ I
Sbjct: 738 TRAGTYLSMIDEKHFSLEASTASLFI 763



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 124/293 (42%), Gaps = 42/293 (14%)

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
           + P+L TY I++    RAG+++  +     + K+   +D + +T ++ G         A 
Sbjct: 83  VTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAM 142

Query: 298 N-VFDGMVNGGVLPSVATYNAMIQVLC--------------------------------- 323
           + V   M   G +P+V +YN +++ LC                                 
Sbjct: 143 DIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTV 202

Query: 324 -----KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
                K+   + A   + EM+ +G +P+  TYN +I  LC    M++A+E +  M  +  
Sbjct: 203 INGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGV 262

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
            P+  TYN ++  +C +G+ +  +   +KM S    P++ TY++L+  +    K+   + 
Sbjct: 263 MPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLC---KNGRCME 319

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           A K+   M  RG  P   T+  +L G    G       +L L  R G  P  +
Sbjct: 320 ARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHY 372


>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 484

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 153/292 (52%), Gaps = 7/292 (2%)

Query: 172 SLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNKALE-V 229
           +L ++  ++   C   +++  +  L  V +  F+ D I++  +  G C  KRT+ A++ V
Sbjct: 90  NLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIV 149

Query: 230 LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR--KCEIDVVTYTTIVHGF 287
           L+ M   G  PN+ +YNI+LKG     + +EA      M      C  DVV+YTT+++GF
Sbjct: 150 LRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGF 209

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
              G++ +A   +  M++ G+LP+V TY+++I  LCK  +++ A+ V   MV  G MPN 
Sbjct: 210 FKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNC 269

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
            TYN ++ G C +G+ + A+ F+ +M  D  EP+V TYN L+ Y C  G      ++F+ 
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDS 329

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
           M      P + TY  L+     +     L+    LL  MV  G  P  + F+
Sbjct: 330 MTKRGLKPEITTYGTLLQGYATKGA---LVEMHGLLDLMVRNGIHPNHYVFS 378



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 156/326 (47%), Gaps = 3/326 (0%)

Query: 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG--C 169
           L A  R    +  ++ RM  L   P   ++ I+ +      ++  A+++   M + G  C
Sbjct: 136 LCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDC 195

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
              + S+ T+++   KE  ++KAY  + ++       +V++Y+ I    C  +  +KA+E
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAME 255

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           VL  MV  G+ PN  TYN ++ GY  +GQ +EA  F  +M     E DVVTY +++    
Sbjct: 256 VLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLC 315

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G    AR +FD M   G+ P + TY  ++Q    K ++     + + MV  G  PN  
Sbjct: 316 KNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHY 375

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            ++++I      G++++A+    +M+     P+  TY  +I   C +G +E  +  FE+M
Sbjct: 376 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM 435

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSD 434
                 P    YN LI S+ +  K D
Sbjct: 436 IDERLSPGNIVYNSLIHSLCIFDKWD 461



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 150/316 (47%), Gaps = 6/316 (1%)

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF---RGKFKADVISYNVIANGWCLV 220
           M + GC  ++ S+N +L  LC E + ++A  L ++     G    DV+SY  + NG+   
Sbjct: 153 MTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKE 212

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
              +KA     EM+DRG+ PN+ TY+ ++    +A  +++A      M K     +  TY
Sbjct: 213 GDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTY 272

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
            +IVHG+   G+ K A      M + GV P V TYN+++  LCK      A  +F+ M  
Sbjct: 273 NSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTK 332

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           +G  P  TTY  +++G    G +      +  M  +   PN   ++ILI  +   G++++
Sbjct: 333 RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQ 392

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
            + +F KM      P+  TY  +I  +    + +D   A +   +M+D    P    +N 
Sbjct: 393 AMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVED---AMRYFEQMIDERLSPGNIVYNS 449

Query: 461 VLNGLLLIGNQGLAKE 476
           +++ L +      AK+
Sbjct: 450 LIHSLCIFDKWDKAKD 465



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 159/340 (46%), Gaps = 7/340 (2%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           R  +  + P   T+ I+      AG+ D       ++ + G R    +F  +L  LC +K
Sbjct: 81  RAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADK 140

Query: 188 KVEKAYNLF--KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN--PNLT 243
           +   A ++   ++ +     +V SYN++  G C   R+ +ALE+L+ M D G +  P++ 
Sbjct: 141 RTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVV 200

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           +Y  V+ G+F+ G +++A+  + EM  R    +VVTY++I+        + +A  V   M
Sbjct: 201 SYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSM 260

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           V  GV+P+  TYN+++   C     + AI   ++M   G  P+  TYN ++  LC  G  
Sbjct: 261 VKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRC 320

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             A +    M     +P + TY  L++ +   G +     L + M      PN   ++IL
Sbjct: 321 TEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSIL 380

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           I +   + K D  ++   +  +M  +G  P   T+  V+ 
Sbjct: 381 ICAYAKQGKVDQAML---VFSKMRQQGLNPDTVTYGTVIG 417



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 138/273 (50%), Gaps = 1/273 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN- 194
           P   ++  +   +   G  D+A   +  M + G   ++ ++++I+  LCK + ++KA   
Sbjct: 197 PDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEV 256

Query: 195 LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           L  + +     +  +YN I +G+C   +  +A+  LK+M   G+ P++ TYN ++    +
Sbjct: 257 LTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCK 316

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G+  EA + F  M KR  + ++ TY T++ G+   G +     + D MV  G+ P+   
Sbjct: 317 NGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYV 376

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           ++ +I    K+  V+ A+LVF +M  +G  P++ TY  VI  LC +G +E A+ +  +M 
Sbjct: 377 FSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMI 436

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
           D+   P    YN LI   C   + ++  + F K
Sbjct: 437 DERLSPGNIVYNSLIHSLCIFDKWDKAKDYFLK 469



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 110/244 (45%), Gaps = 8/244 (3%)

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI--DVVTYTTI 283
           A  V  E++ RG   ++   N  L    R        R+    +    E+  ++ TY  +
Sbjct: 38  ARHVFDELLRRGRGASIYGLNCALADVARHSPAAAVSRYNRMARAGADEVTPNLCTYGIL 97

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI-LVFEEMVGKG 342
           +      G +         ++  G       +  +++ LC      +A+ +V   M   G
Sbjct: 98  IGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLG 157

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD--ECEPNVQTYNILIRYFCDAGEIER 400
            +PN  +YN++++GLC     + ALE +  M DD  +C P+V +Y  +I  F   G++++
Sbjct: 158 CIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDK 217

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
               + +M     LPN+ TY+ +I+++   +  D    A ++L  MV  G MP   T+N 
Sbjct: 218 AYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDK---AMEVLTSMVKNGVMPNCRTYNS 274

Query: 461 VLNG 464
           +++G
Sbjct: 275 IVHG 278



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 6/184 (3%)

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           V P++ TY  +I   C    ++        ++ KG+  ++  +  +++GLC       A+
Sbjct: 87  VTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAM 146

Query: 368 EFV-GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM--GSGVCLPNLDTYNILI 424
           + V  RM    C PNV +YNIL++  CD    +  LEL + M    G C P++ +Y  +I
Sbjct: 147 DIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVI 206

Query: 425 SSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484
           +  F   K  DL  A     EM+DRG +P   T++ ++  L        A E+L    + 
Sbjct: 207 NGFF---KEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKN 263

Query: 485 GRLP 488
           G +P
Sbjct: 264 GVMP 267


>gi|294461967|gb|ADE76539.1| unknown [Picea sitchensis]
          Length = 486

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 106/395 (26%), Positives = 184/395 (46%), Gaps = 38/395 (9%)

Query: 68  TPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVH 127
           TP  V ++I    + AL A+  F + S  P + HS S++   I    R R ++T+  L+ 
Sbjct: 99  TPARVHKLIASQTD-ALLAMEIFEVASRQPGFKHSYSTYHTLICKLGRARQFKTMEGLIQ 157

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           +M+      T   F  I E Y   G  + A+K F  M E G       FN +L +L + K
Sbjct: 158 QMRKDGCPYTPGLFVDIIEIYGEVGMPNEAIKAFHQMLEFGYEPLAKHFNVLLIVLIEHK 217

Query: 188 KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
            +E A +LF                                  K++ + G++PN  TYNI
Sbjct: 218 CLETALSLF----------------------------------KKLHEFGISPNTRTYNI 243

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           +++ +  + ++  A+  F +M K+ C  DV TY+ ++ G     ++K A  V D M+N G
Sbjct: 244 LIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNKG 303

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
            +P   TYN ++  LC+K ++  A  +  +M   G  P+   YN VI G C  G    A 
Sbjct: 304 YVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITGFCREGRALDAC 363

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           + +  M ++ C PN  +Y  L+   C+ G+ +   +  E+M S   +P++  Y++LI+ +
Sbjct: 364 QILRDMPENGCLPNALSYRTLVNGLCNEGKFDEAKDFVEEMISNGFIPHISIYHLLITGL 423

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
               K  +   A ++L+ M  +   P + T++ +L
Sbjct: 424 CNEGKVGE---ACEVLVMMTKQTLAPHESTWSVLL 455



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 131/265 (49%), Gaps = 6/265 (2%)

Query: 226 ALEVLKEMVDR--GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           A+E+  E+  R  G   + +TY+ ++    RA Q +       +M+K  C      +  I
Sbjct: 116 AMEIF-EVASRQPGFKHSYSTYHTLICKLGRARQFKTMEGLIQQMRKDGCPYTPGLFVDI 174

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +  +G VG    A   F  M+  G  P    +N ++ VL +   +E A+ +F+++   G 
Sbjct: 175 IEIYGEVGMPNEAIKAFHQMLEFGYEPLAKHFNVLLIVLIEHKCLETALSLFKKLHEFGI 234

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN+ TYN++IR  CH+ ++  A     +M    C P+V+TY+IL++  C   +++  L 
Sbjct: 235 SPNTRTYNILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALG 294

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           + ++M +   +P+  TYN L++S+  RK   +L  A +LL +M   G  P    +N V+ 
Sbjct: 295 VLDEMLNKGYVPDALTYNTLLNSL-CRKM--NLREAYRLLSKMKVMGCNPDVINYNTVIT 351

Query: 464 GLLLIGNQGLAKEILRLQSRCGRLP 488
           G    G    A +ILR     G LP
Sbjct: 352 GFCREGRALDACQILRDMPENGCLP 376


>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 669

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 162/352 (46%), Gaps = 9/352 (2%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           + S+ + P   T+  I       G+   A+ +   M + GC+ S+ ++  +L+ +CK   
Sbjct: 132 IASMPVPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKSSG 191

Query: 189 VEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
             +A N+    R K    ++++YNVI NG C   R + A E+L  +   G  P++ +Y  
Sbjct: 192 FGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTT 251

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           VLKG   A + ++    F EM  +KC  + VT+  +V  F   G ++RA  V   M   G
Sbjct: 252 VLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHG 311

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
             P+    N +I  +CK+  V++A      M   G  P++ +Y  V+RGLC  G  E A 
Sbjct: 312 CTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAK 371

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           E +  M    C PN  T+N  I   C  G IE+ ++L E M    C   + TYN L+   
Sbjct: 372 ELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGF 431

Query: 428 FVRKKSDDLL-VAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
            V+ + D  L +   L  E       P   T+  +L GL        A E+L
Sbjct: 432 CVQGRVDSALELFNNLPCE-------PNTITYTTLLTGLCHAERLDAAAELL 476



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 104/379 (27%), Positives = 179/379 (47%), Gaps = 13/379 (3%)

Query: 92  ILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149
           IL+   +Y   P   S+   +      R +  V  L   M      P + TF ++   + 
Sbjct: 233 ILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFC 292

Query: 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA--DV 207
             G  +RA+++   M +HGC  +    N +++ +CK+ +V+ AY+      G +    D 
Sbjct: 293 RGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNM-GMYGCNPDT 351

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           ISY  +  G C   R   A E+L EMV +   PN  T+N  +    + G IE+A +    
Sbjct: 352 ISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIEL 411

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M +  C + +VTY  +VHGF V G +  A  +F+   N    P+  TY  ++  LC  + 
Sbjct: 412 MPEYGCSVGIVTYNALVHGFCVQGRVDSALELFN---NLPCEPNTITYTTLLTGLCHAER 468

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
           ++ A  +   M+ K    N+ T+NV++   C  G +E A+E V +M +  C PN+ T+N 
Sbjct: 469 LDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNT 528

Query: 388 LIRYFCDAGEIERGLELFEKMGS-GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
           L+         E  LEL   + S GV L  + TY+ ++  +    ++++   A ++L  +
Sbjct: 529 LLDGITKDCNSEEALELLHGLVSKGVSLDTI-TYSSVVDVLSREDRTEE---AIQMLHAV 584

Query: 447 VDRGFMPRKFTFNRVLNGL 465
            D G  P+   +N++L  L
Sbjct: 585 QDMGMRPKVGMYNKILFAL 603



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 181/379 (47%), Gaps = 9/379 (2%)

Query: 103 PSSFDHAIDLAARLRD--YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           PS   + + L A  +   +     ++  M++    P   T+ +I       G+ D A +I
Sbjct: 174 PSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEI 233

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCL 219
              +  +G +  + S+ T+L  LC  ++ +    LF ++   K   + ++++++   +C 
Sbjct: 234 LNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCR 293

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
                +A++VL++M   G  PN T  NIV+    + G++++A+ F   M    C  D ++
Sbjct: 294 GGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTIS 353

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           YTT++ G    G  + A+ +   MV     P+  T+N  I +LC+K  +E AI + E M 
Sbjct: 354 YTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMP 413

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             G      TYN ++ G C  G ++ ALE    +    CEPN  TY  L+   C A  ++
Sbjct: 414 EYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLP---CEPNTITYTTLLTGLCHAERLD 470

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
              EL   M    C  N  T+N+L+ S F +K   +   A +L+ +M++ G  P   TFN
Sbjct: 471 AAAELLAGMIQKDCPLNAVTFNVLV-SFFCQKGFVE--EAMELVNQMMEHGCTPNLITFN 527

Query: 460 RVLNGLLLIGNQGLAKEIL 478
            +L+G+    N   A E+L
Sbjct: 528 TLLDGITKDCNSEEALELL 546



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 137/308 (44%), Gaps = 41/308 (13%)

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           DV     +    C   RT+ A  VL+     G   ++  YN ++ GY R G+++ A R  
Sbjct: 73  DVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYNTLVAGYCRYGRLDAARRLI 132

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
             M       D  TYT I+ G    G +  A  + D M+  G  PSV TY  +++ +CK 
Sbjct: 133 ASMPVPP---DAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKS 189

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR------------- 372
                A+ V +EM  KG  PN  TYNV+I G+C  G ++ A E + R             
Sbjct: 190 SGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSY 249

Query: 373 ----------------------MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
                                 M D +C PN  T+++L+R+FC  G +ER +++ ++M  
Sbjct: 250 TTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQ 309

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
             C PN    NI+I+++  + + DD   A   L  M   G  P   ++  VL GL   G 
Sbjct: 310 HGCTPNTTLCNIVINAICKQGRVDD---AYDFLNNMGMYGCNPDTISYTTVLRGLCRAGR 366

Query: 471 QGLAKEIL 478
              AKE+L
Sbjct: 367 WEHAKELL 374



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 143/311 (45%), Gaps = 8/311 (2%)

Query: 90  FNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWT----LVHRMKSLSLGPTQKTFAIIA 145
           ++ L+    Y  +P +  +   L    R  R  W     L+  M   +  P + TF    
Sbjct: 336 YDFLNNMGMYGCNPDTISYTTVLRGLCRAGR--WEHAKELLPEMVRKNCPPNEVTFNTFI 393

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA 205
                 G  ++A+K+   M E+GC   + ++N ++   C + +V+ A  LF       + 
Sbjct: 394 CILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNL--PCEP 451

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           + I+Y  +  G C  +R + A E+L  M+ +    N  T+N+++  + + G +EEA    
Sbjct: 452 NTITYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELV 511

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
            +M +  C  +++T+ T++ G       + A  +  G+V+ GV     TY++++ VL ++
Sbjct: 512 NQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSRE 571

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
           D  E AI +   +   G  P    YN ++  LC   E ++A++F   M  + C PN  TY
Sbjct: 572 DRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTY 631

Query: 386 NILIRYFCDAG 396
            ILI      G
Sbjct: 632 IILIEGLAHEG 642



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 86/197 (43%), Gaps = 6/197 (3%)

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
           ++  A  + +   + G  P V     +I+ LC++    +A  V       G   +   YN
Sbjct: 54  DLAEAARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYN 113

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
            ++ G C  G ++ A   +  M      P+  TY  +IR  CD G +   L L + M   
Sbjct: 114 TLVAGYCRYGRLDAARRLIASMP---VPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQR 170

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
            C P++ TY +L+ ++    KS     A  +L EM  +G  P   T+N ++NG+   G  
Sbjct: 171 GCQPSVVTYTVLLEAVC---KSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRV 227

Query: 472 GLAKEILRLQSRCGRLP 488
             AKEIL   S  G  P
Sbjct: 228 DDAKEILNRLSSYGFQP 244


>gi|296087921|emb|CBI35204.3| unnamed protein product [Vitis vinifera]
          Length = 543

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 106/392 (27%), Positives = 185/392 (47%), Gaps = 40/392 (10%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L  +M      P   T+  +       G    A+++  SM +  C+ ++ ++NTI+D LC
Sbjct: 120 LFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLC 179

Query: 185 KEKKVEKAYNLF------------------------------------KVFRGKFKADVI 208
           K+++V +A+NLF                                    ++   K   DV+
Sbjct: 180 KDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVV 239

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRG-LNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           S+N + +  C   +  +A +V+ +M+ RG   PN+ +YN ++ GY +  +I++A   F E
Sbjct: 240 SFNTVVDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLINGYCKIQRIDKAMYLFGE 299

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M +++   D VTY+T++HG   V  ++ A  +F  MV    +P++ TY  ++  LCK   
Sbjct: 300 MCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRY 359

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
           +  A+ + + + G    P+    N+ I G+C  GE+E A +    +     +P+V TY+I
Sbjct: 360 LAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSI 419

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           +I   C  G ++   +LF +M    C  N   YN  I+  F+R  +++   A +LL EMV
Sbjct: 420 MINGLCRRGLLDEASKLFREMDENGCTLNGCIYNT-ITRGFLR--NNETSRAIQLLQEMV 476

Query: 448 DRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
            RGF     T    +  L   G     K+ILR
Sbjct: 477 ARGFSADASTMTLFVKMLSDDGLDQSLKQILR 508


>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 630

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 175/362 (48%), Gaps = 21/362 (5%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           S+F+  I    +    R    ++  M S  L P +KTF  + + ++  G  D A ++   
Sbjct: 194 STFNILIKALCKAHQIRPAILVMEEMSSYGLVPDEKTFTTLMQGFIEEGNMDGAFRVKEQ 253

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRT 223
           M + GC  +  + N ++   CKE ++E+A +       + K  +                
Sbjct: 254 MLDAGCPVTNVTVNVLVHGFCKEGRIEEALSFIDEMSNEGKHTM---------------- 297

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
             A+E+  EM ++G  P+  TYN+++      G+++EA     EM+   C  +V+TY T+
Sbjct: 298 --AIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISGCARNVITYNTL 355

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + GF    +I+ A  +FD M   G+  +  TYN +I  LCK   V+ A  + ++M+ +G 
Sbjct: 356 IDGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGL 415

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+  TYN ++   C  G++++A + V  M  + CEP++ TY  LI   C AG +E    
Sbjct: 416 KPDKFTYNSMLTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVEVASR 475

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           L   +     +     YN +I ++F RK++ +   A +L  EM ++G  P  FT+  V  
Sbjct: 476 LLRSIQLKGMVLTPHAYNPVIQALFKRKRTKE---AMRLFREMEEKGNTPDAFTYKIVFR 532

Query: 464 GL 465
           GL
Sbjct: 533 GL 534



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 146/286 (51%), Gaps = 2/286 (0%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID  +    +     L + MK+    P + T+ ++ +     GK   A+ +   M   GC
Sbjct: 286 IDEMSNEGKHTMAIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISGC 345

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALE 228
            +++ ++NT++D  CK KK+E+A  +F     +    + ++YN + +G C  +R  +A +
Sbjct: 346 ARNVITYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQ 405

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           ++ +M+  GL P+  TYN +L  + R G I++A      M    CE D+VTY T++ G  
Sbjct: 406 LMDQMIMEGLKPDKFTYNSMLTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLC 465

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G ++ A  +   +   G++ +   YN +IQ L K+   + A+ +F EM  KG  P++ 
Sbjct: 466 KAGRVEVASRLLRSIQLKGMVLTPHAYNPVIQALFKRKRTKEAMRLFREMEEKGNTPDAF 525

Query: 349 TYNVVIRGLCHT-GEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           TY +V RGL ++ G +  A++FV  M +    P   ++ +L    C
Sbjct: 526 TYKIVFRGLSNSGGPIGEAVDFVIEMIEKGFLPEFSSFYMLAEGLC 571



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 123/467 (26%), Positives = 202/467 (43%), Gaps = 62/467 (13%)

Query: 40  PAALASLILTSTDPRTLTQTLHCPSLHWTP-QLVDQIIKRLWNHALKALHFFNILSYHPT 98
           P + ++L   ST   T T      S ++TP QL+D +  R  N    AL   +  S  P 
Sbjct: 30  PISNSTLSFASTQQHTATL-----SSNFTPAQLLDTL--RRQNDETAALRLLSWASKQPN 82

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           +  + S ++  +    ++  + ++  ++  MK L                    + DR V
Sbjct: 83  FRPNSSIYEEILRKLGKVGSFNSMKDILQEMKGLDC------------------QIDRGV 124

Query: 159 K-IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGW 217
             IF+         S   F    ++LC  + +E  + L          D + YN + N  
Sbjct: 125 LLIFID--------SYAKFELYEEILCIVEVMEVEFGL--------ALDTLLYNFLLNVL 168

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
               +      V   MV +G+ P+++T+NI++K   +A QI  A     EM       D 
Sbjct: 169 VDGNKLKLVENVHSTMVSKGIKPDVSTFNILIKALCKAHQIRPAILVMEEMSSYGLVPDE 228

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN------- 330
            T+TT++ GF   G +  A  V + M++ G   +  T N ++   CK+  +E        
Sbjct: 229 KTFTTLMQGFIEEGNMDGAFRVKEQMLDAGCPVTNVTVNVLVHGFCKEGRIEEALSFIDE 288

Query: 331 ---------AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
                    AI ++ EM  KG  P+  TYN++I  LC+ G+++ AL  +  M+   C  N
Sbjct: 289 MSNEGKHTMAIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISGCARN 348

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
           V TYN LI  FC   +IE   E+F++M       N  TYN LI  +    KS  +  A +
Sbjct: 349 VITYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLC---KSRRVQEAAQ 405

Query: 442 LLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           L+ +M+  G  P KFT+N +L      G+   A +I++  +  G  P
Sbjct: 406 LMDQMIMEGLKPDKFTYNSMLTYFCREGDIQKAADIVQTMTSNGCEP 452


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 100/357 (28%), Positives = 181/357 (50%), Gaps = 5/357 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P + T++ +     + G  +RA+ +F    E G + S+  +NT++  L K+  V +A  L
Sbjct: 354 PDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQL 413

Query: 196 FK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            K +       D+ +YN++ NG C +   + A  +L + + +G  P++ T+N ++ GY +
Sbjct: 414 MKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCK 473

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
              +++A      M       DV+TY T+++G     ++    + F  M+  G  P++ T
Sbjct: 474 QRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIIT 533

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE-FVGRM 373
           YN +I+  CK   V  A+ +F+EM  +G  P+  T   +I GLC  GE+++A E FV   
Sbjct: 534 YNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIE 593

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
           K+ +   +   +NI+I  FC+   +    +LF KMG   C P+  TY ++I S     K+
Sbjct: 594 KEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYC---KT 650

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
            ++ +A   L+E + +G +P   T  +VLN L +      A  I+ L  + G +P +
Sbjct: 651 GNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVPEE 707



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 108/416 (25%), Positives = 200/416 (48%), Gaps = 6/416 (1%)

Query: 76  IKRLWNHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLS 133
           I R +    K     N+      Y   PS  S++  +++      +     +  RMK + 
Sbjct: 82  IMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIG 141

Query: 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
           + P   T  I  + +   G+   A+++  +M   GC  +  S+  ++    KE    +AY
Sbjct: 142 IYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAY 201

Query: 194 NLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
           +LF ++ +     D++++N + +  C      ++ ++  +++ RG+ PNL T+NI ++G 
Sbjct: 202 HLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGL 261

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
            R G I+EA R    +       DV++Y T++ GF    ++  A      MVN GV P+ 
Sbjct: 262 CRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNE 321

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            TYN +I   CK   ++NA  +  + + KG++P+  TY+ +I GLC+ G+M RA+     
Sbjct: 322 FTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYE 381

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
             +   + ++  YN L++     G + + L+L + M    C P++ TYN++++ +    K
Sbjct: 382 AMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLC---K 438

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
              L  A  +L + + +G +P  FTFN +++G     N   A EIL      G  P
Sbjct: 439 MGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITP 494



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 175/375 (46%), Gaps = 4/375 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  I +  +  + +    L  ++    + P   TF I  +     G  D A ++  S+
Sbjct: 218 TFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESI 277

Query: 165 HEHGCRQSLNSFNTILDLLCKEKK-VEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRT 223
              G    + S+NT++   CK  K VE    L K+     + +  +YN I NG+C     
Sbjct: 278 VSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMM 337

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
             A ++L++ + +G  P+  TY+ ++ G    G +  A   F E  ++  +  ++ Y T+
Sbjct: 338 QNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTL 397

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           V G    G + +A  +   M+  G  P + TYN ++  LCK   + +A  +  + + KG 
Sbjct: 398 VKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGC 457

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
           +P+  T+N +I G C    M++A+E +  M      P+V TYN L+   C A +++  ++
Sbjct: 458 IPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVD 517

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
            F+ M    C PN+ TYNILI S    +K  +   A +L  EM  RG  P   T   ++ 
Sbjct: 518 TFKAMLEKGCTPNIITYNILIESFCKDRKVSE---AMELFKEMKTRGLTPDIVTLCTLIC 574

Query: 464 GLLLIGNQGLAKEIL 478
           GL   G    A E+ 
Sbjct: 575 GLCSNGELDKAYELF 589



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 113/457 (24%), Positives = 207/457 (45%), Gaps = 35/457 (7%)

Query: 69  PQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHR 128
           P+ V  +I R  N  L AL  FN +     + H+  ++   I+       +  +  ++  
Sbjct: 7   PKHVAAVI-RYQNDPLNALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAE 65

Query: 129 M-KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           M K++     +  +  I   Y   GK   AV +F  M  + C  S+ S+N I+++L +  
Sbjct: 66  MRKNVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYG 125

Query: 188 KVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
              +A+ ++   +      DV ++ +    +C+  R   AL +L  M  +G   N  +Y 
Sbjct: 126 YFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYC 185

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
            V+ G+++     EA+  F EM K+    D++T+  ++H     G ++ +  +F  ++  
Sbjct: 186 AVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKR 245

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           GV P++ T+N  IQ LC+K +++ A  + E +V +G  P+  +YN +I G C   ++  A
Sbjct: 246 GVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEA 305

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
             ++ +M +   EPN  TYN +I  FC AG ++   ++         +P+  TY+ LI+ 
Sbjct: 306 ECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLING 365

Query: 427 M------------------------------FVRKKSDDLLV--AGKLLIEMVDRGFMPR 454
           +                               V+  S   LV  A +L+ +M++ G  P 
Sbjct: 366 LCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPD 425

Query: 455 KFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
            +T+N V+NGL  +G    A  IL      G +P  F
Sbjct: 426 IWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIF 462



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 2/159 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  I+   + R       L   MK+  L P   T   +     S G+ D+A ++F+++
Sbjct: 533 TYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTI 592

Query: 165 H-EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKR 222
             E+    S   FN +++  C++  V  A  LF    G   A D  +Y V+ + +C    
Sbjct: 593 EKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGN 652

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
            + A   L E + +GL P+ TT   VL       ++ EA
Sbjct: 653 IDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEA 691


>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
 gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
          Length = 653

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/362 (27%), Positives = 172/362 (47%), Gaps = 16/362 (4%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S D A+ L   LRD  T         S    P   ++  + +    A +  R   +   M
Sbjct: 204 SVDEALRL---LRDLPT---------SFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEM 251

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRT 223
              GC  ++ +FNT++  LC+    E+ +  L ++       D+  Y  + +G C     
Sbjct: 252 VRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHL 311

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
             A E+L  M   GL PN+  YN VLKG   A + E+A     EM    C +D VT+  +
Sbjct: 312 EVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNIL 371

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           V  F   G + R   + + M+  G +P V TY  +I   CK+  ++ A+++ + M   G 
Sbjct: 372 VDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGC 431

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN+ +Y +V++GLC       A + + +M +  C PN  T+N +I + C  G +E+ +E
Sbjct: 432 RPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIE 491

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           L ++M    C P+L +Y+ +I  +    K+D+ L   +LL  MV++G  P    ++ + +
Sbjct: 492 LLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEAL---ELLNVMVNKGMSPNTIIYSSIAS 548

Query: 464 GL 465
            L
Sbjct: 549 AL 550



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 185/388 (47%), Gaps = 4/388 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  I    R   +  V  ++ +M      P  + +A + +     G  + A +I   M
Sbjct: 262 TFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRM 321

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
             +G + ++  +NT+L  LC  ++ E+A  L  ++F      D +++N++ + +C     
Sbjct: 322 PSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLV 381

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            + +E+L++M++ G  P++ TY  V+ G+ + G I+EA      M    C  + ++YT +
Sbjct: 382 YRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIV 441

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G         A ++   M+  G  P+  T+N +I  LCKK  VE AI + ++M+  G 
Sbjct: 442 LKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGC 501

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+  +Y+ VI GL   G+ + ALE +  M +    PN   Y+ +       G I R ++
Sbjct: 502 SPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQ 561

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           +F+ +       +   YN +ISS+  R  +D    A + L  MV  G MP + T+  ++ 
Sbjct: 562 MFDNIQDVTIRSDAVLYNAVISSLCKRGGTDR---AIEFLAYMVSSGCMPNESTYTILIR 618

Query: 464 GLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           GL   G    A+E+L      G L + F
Sbjct: 619 GLASEGFVKEAQEMLTELCSKGALRKHF 646



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 165/351 (47%), Gaps = 8/351 (2%)

Query: 63  PSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDYR 120
           P +     ++D + K    H L+  H   IL   P+Y   P+   ++  +        + 
Sbjct: 293 PDIRMYATVLDGVCKE--GH-LEVAH--EILDRMPSYGLKPNVVCYNTVLKGLCSAERWE 347

Query: 121 TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180
               L+  M          TF I+ + +   G   R +++   M EHGC   + ++ T++
Sbjct: 348 QAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVI 407

Query: 181 DLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
           +  CKE  +++A  L K       + + ISY ++  G C  +R   A +++ +M+++G +
Sbjct: 408 NGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCS 467

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           PN  T+N V+    + G +E+A     +M    C  D+++Y+T++ G G  G+   A  +
Sbjct: 468 PNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALEL 527

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
            + MVN G+ P+   Y+++   L K+  +   I +F+ +       ++  YN VI  LC 
Sbjct: 528 LNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVISSLCK 587

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
            G  +RA+EF+  M    C PN  TY ILIR     G ++   E+  ++ S
Sbjct: 588 RGGTDRAIEFLAYMVSSGCMPNESTYTILIRGLASEGFVKEAQEMLTELCS 638



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 140/351 (39%), Gaps = 75/351 (21%)

Query: 210 YNVIANGWCLV--------------------------------KRTNKALEVLKEMVDRG 237
           YN + +G+C                                   R   AL VL EM  RG
Sbjct: 86  YNAMVSGYCRAGQLASARRLAASVPVPPNAYTYFPVVRALCARGRIADALSVLDEMRRRG 145

Query: 238 LNPNLTTYNIVLKG--------YFRA-------------------------------GQI 258
             P    Y+++L+          FR+                               G +
Sbjct: 146 CAPIPPMYHVILEAACSRGGGGGFRSAVRVLQDLHGRGCALDVGNCNLVLNAVCDQGGSV 205

Query: 259 EEAWRFFLEMKKR-KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           +EA R   ++     C+ DVV+Y  ++ G  +     R +++ + MV  G  P+V T+N 
Sbjct: 206 DEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNT 265

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           +I  LC+    E    V  +MV  G  P+   Y  V+ G+C  G +E A E + RM    
Sbjct: 266 LIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYG 325

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
            +PNV  YN +++  C A   E+  EL  +M    C  +  T+NIL+   F +      +
Sbjct: 326 LKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILV-DFFCQNGLVYRV 384

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           +  +LL +M++ G +P   T+  V+NG    G    A  +L+  + CG  P
Sbjct: 385 I--ELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRP 433


>gi|50582688|gb|AAT78758.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
 gi|108709716|gb|ABF97511.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1025

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/373 (29%), Positives = 189/373 (50%), Gaps = 32/373 (8%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           +++ +MK+  L P   T+  I   YV  G+   A++I   M ++G    L ++N ++D L
Sbjct: 251 SMLQKMKNCRL-PNAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKL 309

Query: 184 CKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CK K+  +AY L K  R      D  SYN + +G+    + N A+ +  +M+ + L P++
Sbjct: 310 CKLKRSARAYLLLKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSV 369

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKR--------------KCEI------DVVTYTT 282
            TY  ++ GY R G+ +EA R   EM+                KC +      DV+TY+ 
Sbjct: 370 ATYTALIDGYCRNGRTDEARRVLYEMQITGVRPREVSKAKQILKCMLADGIDPDVITYSA 429

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           +++  G++ E ++ +     M    +   VA++N +I   C++ +V  A  V++ MV  G
Sbjct: 430 LINE-GMIAEAEQFKQYMSRM---KISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHG 485

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
           + P+  TY  ++RGLC  G + +A EF+  + +  C  + +T N L+   C  G ++  L
Sbjct: 486 WPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEAL 545

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           +L EKM +   LP+  TY IL+     R K    L+   LL  M+++G +P    +  +L
Sbjct: 546 DLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALI---LLQMMLEKGLVPDTIAYTCLL 602

Query: 463 NGLLLIGNQGLAK 475
           NGL+   N+G  K
Sbjct: 603 NGLV---NEGQVK 612



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/389 (24%), Positives = 187/389 (48%), Gaps = 5/389 (1%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           +SF+  ID   +  +    +++   M      P   T+  +       G   +A +  + 
Sbjct: 456 ASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVY 515

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKR 222
           + E  C     + NT+L  +CK   +++A +L  K+       D  +Y ++ +G+C   +
Sbjct: 516 LLEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGK 575

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK-KRKCEIDVVTYT 281
              AL +L+ M+++GL P+   Y  +L G    GQ++ A   F E+  K     D + Y 
Sbjct: 576 VVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYN 635

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
           ++++G+   G+I     +   M    V PS A+YN ++    KK  +   + ++ +MV +
Sbjct: 636 SMMNGYLKGGQINEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKE 695

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
           G  P++ TY ++I GLC  G +E A++F+ +M  +   P+   ++ILI+ F +  ++   
Sbjct: 696 GIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNA 755

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
           L+LF  M      P+  TY  +++ + +RK  + L  + ++L +MV+ G  P+   +  +
Sbjct: 756 LQLFSYMKWLHMSPSSKTYVAMVNGL-IRK--NWLQQSYEILHDMVESGLQPKHTHYIAL 812

Query: 462 LNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
           +N    +G+   A E+       G +P +
Sbjct: 813 INAKCRVGDIDGAFELKEDMKALGVVPSE 841



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 161/331 (48%), Gaps = 6/331 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M    + P+  ++ I+   Y+  G+  R + ++  M + G +    ++  ++  LC
Sbjct: 653 LMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLC 712

Query: 185 KEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           +   +E A    +  V  G F  D ++++++   +    + + AL++   M    ++P+ 
Sbjct: 713 EYGLIEIAVKFLEKMVLEGVF-PDNLAFDILIKAFSEKSKMSNALQLFSYMKWLHMSPSS 771

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TY  ++ G  R   +++++    +M +   +     Y  +++    VG+I  A  + + 
Sbjct: 772 KTYVAMVNGLIRKNWLQQSYEILHDMVESGLQPKHTHYIALINAKCRVGDIDGAFELKED 831

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M   GV+PS    +++++ LCK   VE AI+VF  ++  G +P   T+  ++ GLC   +
Sbjct: 832 MKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFK 891

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           ++ A      M+    + +V TYN+LI   C+   I   L+L+E+M S   LPN+ TY  
Sbjct: 892 IDDAFHLKQLMESCGLKVDVVTYNVLITGLCNKKCICDALDLYEEMKSKGLLPNITTYIT 951

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
           L  +M+      D     KLL ++ DRG +P
Sbjct: 952 LTGAMYATGTMQD---GEKLLKDIEDRGIVP 979



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 163/343 (47%), Gaps = 5/343 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L  +M + ++ P   T+ I+ + +   GK   A+ +   M E G      ++  +L+ L 
Sbjct: 547 LCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQMMLEKGLVPDTIAYTCLLNGLV 606

Query: 185 KEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
            E +V+ A  +F+  + +    AD I+YN + NG+    + N+   +++ M +  + P+ 
Sbjct: 607 NEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMHENEVYPSS 666

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            +YNI++ GY + GQ+      + +M K   + D VTY  ++ G    G I+ A    + 
Sbjct: 667 ASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEK 726

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           MV  GV P    ++ +I+   +K  + NA+ +F  M      P+S TY  ++ GL     
Sbjct: 727 MVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKWLHMSPSSKTYVAMVNGLIRKNW 786

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           ++++ E +  M +   +P    Y  LI   C  G+I+   EL E M +   +P+    + 
Sbjct: 787 LQQSYEILHDMVESGLQPKHTHYIALINAKCRVGDIDGAFELKEDMKALGVVPSEVAESS 846

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           ++  +    K ++ ++   +   ++  G +P   TF  +++GL
Sbjct: 847 IVRGLCKCGKVEEAII---VFSSIMRAGMVPTIATFTTLMHGL 886



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 97/443 (21%), Positives = 181/443 (40%), Gaps = 91/443 (20%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   +L+     + L+ RM+ ++L P + ++  +   +   GK + A+ IF  M
Sbjct: 301 TYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQM 360

Query: 165 HEHGCRQSLNSFNTILDLLCKE--------------------KKVEKAYNLFKVF----- 199
                + S+ ++  ++D  C+                     ++V KA  + K       
Sbjct: 361 LRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPREVSKAKQILKCMLADGI 420

Query: 200 ---------------------------RGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
                                      R K   DV S+N I + +C      +A  V   
Sbjct: 421 DPDVITYSALINEGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDN 480

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           MV  G  P++ TY  +L+G  + G + +A  F + + ++ C ID  T  T++ G    G 
Sbjct: 481 MVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGT 540

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           +  A ++ + MV   +LP   TY  ++   CK+  V  A+++ + M+ KG +P++  Y  
Sbjct: 541 LDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQMMLEKGLVPDTIAYTC 600

Query: 353 VIRGLCHTGEMERA-----------------------------------LEFVGR-MKDD 376
           ++ GL + G+++ A                                   +E + R M ++
Sbjct: 601 LLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMHEN 660

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
           E  P+  +YNIL+  +   G++ R L L+  M      P+  TY +LI   F   +   +
Sbjct: 661 EVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLI---FGLCEYGLI 717

Query: 437 LVAGKLLIEMVDRGFMPRKFTFN 459
            +A K L +MV  G  P    F+
Sbjct: 718 EIAVKFLEKMVLEGVFPDNLAFD 740



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 157/358 (43%), Gaps = 31/358 (8%)

Query: 143 IIAERYVSAGKA-DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFR 200
           ++   YV  GK  D A  IF  M E G + SL S N IL+ L    K E  +   K    
Sbjct: 165 LLVNAYVKEGKVLDAAAAIFF-MDECGFKASLFSCNNILNALVGINKSEYVWLFLKESLD 223

Query: 201 GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
            KF  DV + N++ N  C   + +KA  +L++M +  L PN  TYN +L  Y + G+ + 
Sbjct: 224 RKFPLDVTTCNIVLNSLCTQGKLSKAESMLQKMKNCRL-PNAVTYNTILNWYVKKGRCKS 282

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
           A R   +M+K   E D+ TY  ++     +    RA  +   M    + P   +YN +I 
Sbjct: 283 ALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSYNTLIH 342

Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG------------------- 361
               +  +  AI +F +M+ +   P+  TY  +I G C  G                   
Sbjct: 343 GFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRP 402

Query: 362 -EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
            E+ +A + +  M  D  +P+V TY+ LI    + G I    +  + M       ++ ++
Sbjct: 403 REVSKAKQILKCMLADGIDPDVITYSALI----NEGMIAEAEQFKQYMSRMKISFDVASF 458

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           N +I S   R    ++L A  +   MV  G+ P   T+  +L GL   G+   AKE +
Sbjct: 459 NCIIDSYCQR---GNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFM 513



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 142/318 (44%), Gaps = 5/318 (1%)

Query: 103 PSSFDHAIDLAARLRD---YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           PSS  + I +   ++     RT++ L   M    + P   T+ ++       G  + AVK
Sbjct: 664 PSSASYNILMHGYIKKGQLSRTLY-LYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVK 722

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWC 218
               M   G      +F+ ++    ++ K+  A  LF   +         +Y  + NG  
Sbjct: 723 FLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKWLHMSPSSKTYVAMVNGLI 782

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
                 ++ E+L +MV+ GL P  T Y  ++    R G I+ A+    +MK        V
Sbjct: 783 RKNWLQQSYEILHDMVESGLQPKHTHYIALINAKCRVGDIDGAFELKEDMKALGVVPSEV 842

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
             ++IV G    G+++ A  VF  ++  G++P++AT+  ++  LCK+  +++A  + + M
Sbjct: 843 AESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQLM 902

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
              G   +  TYNV+I GLC+   +  AL+    MK     PN+ TY  L       G +
Sbjct: 903 ESCGLKVDVVTYNVLITGLCNKKCICDALDLYEEMKSKGLLPNITTYITLTGAMYATGTM 962

Query: 399 ERGLELFEKMGSGVCLPN 416
           + G +L + +     +P+
Sbjct: 963 QDGEKLLKDIEDRGIVPS 980



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 115/244 (47%), Gaps = 5/244 (2%)

Query: 172 SLNSFNTILDLLCKEKKV-EKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVL 230
           +L S + +++   KE KV + A  +F +    FKA + S N I N    + ++      L
Sbjct: 159 NLFSVDLLVNAYVKEGKVLDAAAAIFFMDECGFKASLFSCNNILNALVGINKSEYVWLFL 218

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI-DVVTYTTIVHGFGV 289
           KE +DR    ++TT NIVL      G++ +A     +MK   C + + VTY TI++ +  
Sbjct: 219 KESLDRKFPLDVTTCNIVLNSLCTQGKLSKAESMLQKMK--NCRLPNAVTYNTILNWYVK 276

Query: 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
            G  K A  + D M   G+   + TYN MI  LCK      A L+ + M      P+  +
Sbjct: 277 KGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECS 336

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE-LFEKM 408
           YN +I G    G++  A+    +M     +P+V TY  LI  +C  G  +     L+E  
Sbjct: 337 YNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQ 396

Query: 409 GSGV 412
            +GV
Sbjct: 397 ITGV 400



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 106/215 (49%), Gaps = 12/215 (5%)

Query: 65  LHWTPQ------LVDQIIKRLW-NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLR 117
           LH +P       +V+ +I++ W   + + LH        P + H    +   I+   R+ 
Sbjct: 765 LHMSPSSKTYVAMVNGLIRKNWLQQSYEILHDMVESGLQPKHTH----YIALINAKCRVG 820

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177
           D    + L   MK+L + P++   + I       GK + A+ +F S+   G   ++ +F 
Sbjct: 821 DIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFT 880

Query: 178 TILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
           T++  LCKE K++ A++L ++      K DV++YNV+  G C  K    AL++ +EM  +
Sbjct: 881 TLMHGLCKEFKIDDAFHLKQLMESCGLKVDVVTYNVLITGLCNKKCICDALDLYEEMKSK 940

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
           GL PN+TTY  +    +  G +++  +   +++ R
Sbjct: 941 GLLPNITTYITLTGAMYATGTMQDGEKLLKDIEDR 975


>gi|255549482|ref|XP_002515794.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545122|gb|EEF46633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 924

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 179/366 (48%), Gaps = 4/366 (1%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            LV  M+   +      +  + + Y   G  ++ + +F  + E G   S+ S+  +++L 
Sbjct: 432 ALVREMEGEGIDAPIDIYHTMMDGYTMVGNEEKCLTVFERLKECGFAPSVVSYGCLINLY 491

Query: 184 CKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
            K  K+ KA  + K+      K ++ +Y+++ NG+  +K    A  + +++V  GL P++
Sbjct: 492 AKVGKISKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDVVKDGLKPDV 551

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
             YN +++ +   G ++ A     EM+K +      T+  I+HGF   GE+KRA +VFD 
Sbjct: 552 VLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALDVFDM 611

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M   G +P+V T+NA+I  L +K  +E AI + +EM   G  PN  TY  ++ G    G+
Sbjct: 612 MRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAGVSPNEHTYTTIMHGYAALGD 671

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
             +A E+  +++D+  + +V TY  L++  C +G ++  L + ++M +     N   YNI
Sbjct: 672 TGKAFEYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFVYNI 731

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           LI     R    D+  A  L+ +M   G  P   T+   +N     G+   A +++    
Sbjct: 732 LIDGWARR---GDVWEAADLMQQMKQGGVKPDIHTYTSFINACCKAGDMLRASKMMEEME 788

Query: 483 RCGRLP 488
             G  P
Sbjct: 789 TSGVKP 794



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 171/364 (46%), Gaps = 4/364 (1%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
           AR  D          M++  + PT   +  +   Y      + A+     M E G   SL
Sbjct: 317 ARRGDMHRARQTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSCARKMKEEGVEMSL 376

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKFK-ADVISYNVIANGWCLVKRTNKALEVLKE 232
            +++ I+    K    + A   FK  + +    + I Y  +   +C     ++A  +++E
Sbjct: 377 VTYSIIVGGFAKIGNADAADRWFKEAKDRHSHMNAIIYGNMIYAYCQTCNMDQAEALVRE 436

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M   G++  +  Y+ ++ GY   G  E+    F  +K+      VV+Y  +++ +  VG+
Sbjct: 437 MEGEGIDAPIDIYHTMMDGYTMVGNEEKCLTVFERLKECGFAPSVVSYGCLINLYAKVGK 496

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           I +A  V   M + G+  ++ TY+ +I    K     NA  +FE++V  G  P+   YN 
Sbjct: 497 ISKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDVVKDGLKPDVVLYNN 556

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           +IR  C  G M+RA+  V  M+ +   P  +T+  +I  F  AGE++R L++F+ M    
Sbjct: 557 IIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALDVFDMMRRSG 616

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
           C+P + T+N LI  +  +++ +  +   ++L EM   G  P + T+  +++G   +G+ G
Sbjct: 617 CIPTVHTFNALILGLVEKRQMEKAI---EILDEMALAGVSPNEHTYTTIMHGYAALGDTG 673

Query: 473 LAKE 476
            A E
Sbjct: 674 KAFE 677



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 175/379 (46%), Gaps = 39/379 (10%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           T+  R+K     P+  ++  +   Y   GK  +A+++   M   G + ++ +++ +++  
Sbjct: 467 TVFERLKECGFAPSVVSYGCLINLYAKVGKISKALEVSKMMESAGIKHNMKTYSMLINGF 526

Query: 184 CKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
            K K    A+ +F+ V +   K DV+ YN I   +C +   ++A+ ++KEM      P  
Sbjct: 527 LKLKDWANAFAIFEDVVKDGLKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPTS 586

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC----------------------EIDVV-- 278
            T+  ++ G+ RAG+++ A   F  M++  C                       I+++  
Sbjct: 587 RTFMPIIHGFARAGEMKRALDVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDE 646

Query: 279 -----------TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
                      TYTTI+HG+  +G+  +A   F  + + G+   V TY A+++  CK   
Sbjct: 647 MALAGVSPNEHTYTTIMHGYAALGDTGKAFEYFTKLRDEGLQLDVYTYEALLKACCKSGR 706

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
           +++A+ V +EM  +    N+  YN++I G    G++  A + + +MK    +P++ TY  
Sbjct: 707 MQSALAVTKEMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQGGVKPDIHTYTS 766

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
            I   C AG++ R  ++ E+M +    PN+ TY  LI         +  L   +   EM 
Sbjct: 767 FINACCKAGDMLRASKMMEEMETSGVKPNVKTYTTLIHGWARASLPEKAL---RCFQEMK 823

Query: 448 DRGFMPRKFTFNRVLNGLL 466
             G  P K  ++ ++  LL
Sbjct: 824 LAGLKPDKAVYHCLMTALL 842



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 111/275 (40%), Gaps = 38/275 (13%)

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
           +R   P+   Y +++  Y R G +  A + F  M+ R  E     YT+++H + V  +++
Sbjct: 299 ERIKKPSRREYGLMVSYYARRGDMHRARQTFESMRARGIEPTSHVYTSLIHAYAVGRDME 358

Query: 295 RARNVFDGMVNGGVLPSVATY-----------NA------------------------MI 319
            A +    M   GV  S+ TY           NA                        MI
Sbjct: 359 EALSCARKMKEEGVEMSLVTYSIIVGGFAKIGNADAADRWFKEAKDRHSHMNAIIYGNMI 418

Query: 320 QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
              C+  +++ A  +  EM G+G       Y+ ++ G    G  E+ L    R+K+    
Sbjct: 419 YAYCQTCNMDQAEALVREMEGEGIDAPIDIYHTMMDGYTMVGNEEKCLTVFERLKECGFA 478

Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA 439
           P+V +Y  LI  +   G+I + LE+ + M S     N+ TY++LI+      K  D   A
Sbjct: 479 PSVVSYGCLINLYAKVGKISKALEVSKMMESAGIKHNMKTYSMLINGFL---KLKDWANA 535

Query: 440 GKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
             +  ++V  G  P    +N ++     +G    A
Sbjct: 536 FAIFEDVVKDGLKPDVVLYNNIIRAFCGMGTMDRA 570



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 3/179 (1%)

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           PS   Y  M+    ++  +  A   FE M  +G  P S  Y  +I       +ME AL  
Sbjct: 304 PSRREYGLMVSYYARRGDMHRARQTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSC 363

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
             +MK++  E ++ TY+I++  F   G  +     F++        N   Y  +I   + 
Sbjct: 364 ARKMKEEGVEMSLVTYSIIVGGFAKIGNADAADRWFKEAKDRHSHMNAIIYGNMI---YA 420

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             ++ ++  A  L+ EM   G       ++ +++G  ++GN+     +      CG  P
Sbjct: 421 YCQTCNMDQAEALVREMEGEGIDAPIDIYHTMMDGYTMVGNEEKCLTVFERLKECGFAP 479


>gi|357127305|ref|XP_003565323.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Brachypodium distachyon]
          Length = 746

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/357 (29%), Positives = 176/357 (49%), Gaps = 7/357 (1%)

Query: 125 LVHR-MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           +VHR + +  L P + T++ +      AG+ D AV +   M   G   +  +FN +L  +
Sbjct: 300 VVHRSIPAWKLVPDKFTYSTVVSALADAGRVDDAVALVHEMVVDGVVAA-EAFNPVLGAM 358

Query: 184 CKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
            +   V  A  LF   + K  A    +YNV+ +G  L  R   A+ V++ M    + P +
Sbjct: 359 LRTGDVTGAAKLFSFMQLKGCAPSAATYNVLLHGLLLCGRAKAAMGVMRRMERAEVVPGV 418

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TY  V+ G  R G++E+A +   EM+ +    +   ++ ++ GF  +GE+ RA  V+D 
Sbjct: 419 MTYGAVVDGLVRCGRLEDACKVIEEMRSKGLVPNEFVFSPVITGFCKLGEVDRASRVWDT 478

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           MV  G+ P+V  Y+AMI  L +   +  A L+F EM+    +PN  TY+ ++RG    G+
Sbjct: 479 MVAAGIKPNVVLYSAMIDGLARCGKMTEAELLFREMIEAKCVPNIMTYSSMVRGYFQIGD 538

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
             +AL F   M    C PN  TY++LI   C+ G  +  + +++ M    C+P+   Y  
Sbjct: 539 SSQALSFWEDMLRIGCTPNAVTYSVLINGLCNVGRSKDAMMVWKHMLGRGCVPDTIAYTS 598

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRG-FMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           +I    V    D  L   +L  +M+ RG   P    +N +L+GLL   +   A ++L
Sbjct: 599 MIKGFCVSGMVDAGL---RLFYDMLARGDTHPDVICYNVLLDGLLRAKDLPRAMDLL 652



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 166/346 (47%), Gaps = 29/346 (8%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++ RM+   + P   T+  + +  V  G+ + A K+   M   G   +   F+ ++   C
Sbjct: 405 VMRRMERAEVVPGVMTYGAVVDGLVRCGRLEDACKVIEEMRSKGLVPNEFVFSPVITGFC 464

Query: 185 KEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  +V++A  ++        K +V+ Y+ + +G     +  +A  + +EM++    PN+ 
Sbjct: 465 KLGEVDRASRVWDTMVAAGIKPNVVLYSAMIDGLARCGKMTEAELLFREMIEAKCVPNIM 524

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY+ +++GYF+ G   +A  F+ +M +  C  + VTY+ +++G   VG  K A  V+  M
Sbjct: 525 TYSSMVRGYFQIGDSSQALSFWEDMLRIGCTPNAVTYSVLINGLCNVGRSKDAMMVWKHM 584

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG-YMPNSTTYNVVIRGLCHTGE 362
           +  G +P    Y +MI+  C    V+  + +F +M+ +G   P+   YNV++ GL    +
Sbjct: 585 LGRGCVPDTIAYTSMIKGFCVSGMVDAGLRLFYDMLARGDTHPDVICYNVLLDGLLRAKD 644

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE---RGLELFEKMGSGVCLPNLDT 419
           + RA++ + +M D  C+P+  T N  +R      EIE   +G E  E +   +C      
Sbjct: 645 LPRAMDLLNQMLDQACDPDTVTCNTFLR------EIEVGQKGQEFLEGLVVRLC------ 692

Query: 420 YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
                     RK++     AG++L+ M+ +  +P       V+ G+
Sbjct: 693 ---------NRKRNK---AAGEVLMVMLAKYIVPEAAVLEMVVRGV 726



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/318 (20%), Positives = 133/318 (41%), Gaps = 54/318 (16%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   +D   R         ++  M+S  L P +  F+ +   +   G+ DRA +++ +M
Sbjct: 420 TYGAVVDGLVRCGRLEDACKVIEEMRSKGLVPNEFVFSPVITGFCKLGEVDRASRVWDTM 479

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK----------------VFRGKFK---- 204
              G + ++  ++ ++D L +  K+ +A  LF+                + RG F+    
Sbjct: 480 VAAGIKPNVVLYSAMIDGLARCGKMTEAELLFREMIEAKCVPNIMTYSSMVRGYFQIGDS 539

Query: 205 ----------------ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
                            + ++Y+V+ NG C V R+  A+ V K M+ RG  P+   Y  +
Sbjct: 540 SQALSFWEDMLRIGCTPNAVTYSVLINGLCNVGRSKDAMMVWKHMLGRGCVPDTIAYTSM 599

Query: 249 LKGYFRAGQIEEAWRFFLEMKKR-KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           +KG+  +G ++   R F +M  R     DV+ Y  ++ G     ++ RA ++ + M++  
Sbjct: 600 IKGFCVSGMVDAGLRLFYDMLARGDTHPDVICYNVLLDGLLRAKDLPRAMDLLNQMLDQA 659

Query: 308 VLPSVATYN-----------------AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
             P   T N                  ++  LC +   + A  V   M+ K  +P +   
Sbjct: 660 CDPDTVTCNTFLREIEVGQKGQEFLEGLVVRLCNRKRNKAAGEVLMVMLAKYIVPEAAVL 719

Query: 351 NVVIRGLCHTGEMERALE 368
            +V+RG+C    + R ++
Sbjct: 720 EMVVRGVCRRKRVWRVID 737



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 128/295 (43%), Gaps = 12/295 (4%)

Query: 202 KFKADVISYNVIANGWC--LVKRTNKA-LEVLKEMVDRG-----LNPNLTTYNIVLKGYF 253
           +    ++S+N++    C  LV R ++  LE+   +V R      L P+  TY+ V+    
Sbjct: 266 RLAPTLLSFNLLLKCVCSSLVPRNHQLYLELALRVVHRSIPAWKLVPDKFTYSTVVSALA 325

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
            AG++++A     EM      +    +  ++      G++  A  +F  M   G  PS A
Sbjct: 326 DAGRVDDAVALVHEMVVDGV-VAAEAFNPVLGAMLRTGDVTGAAKLFSFMQLKGCAPSAA 384

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           TYN ++  L      + A+ V   M     +P   TY  V+ GL   G +E A + +  M
Sbjct: 385 TYNVLLHGLLLCGRAKAAMGVMRRMERAEVVPGVMTYGAVVDGLVRCGRLEDACKVIEEM 444

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
           +     PN   ++ +I  FC  GE++R   +++ M +    PN+  Y+ +I  +    + 
Sbjct: 445 RSKGLVPNEFVFSPVITGFCKLGEVDRASRVWDTMVAAGIKPNVVLYSAMIDGL---ARC 501

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             +  A  L  EM++   +P   T++ ++ G   IG+   A        R G  P
Sbjct: 502 GKMTEAELLFREMIEAKCVPNIMTYSSMVRGYFQIGDSSQALSFWEDMLRIGCTP 556


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/387 (28%), Positives = 183/387 (47%), Gaps = 6/387 (1%)

Query: 81  NHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQ 138
           N + +AL   ++++        P   S+   I+   +  D    ++  H M    + P  
Sbjct: 172 NRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDV 231

Query: 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV 198
            T+  I      A   D+A+++  +M ++G      ++N+IL   C   + ++A    K 
Sbjct: 232 VTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKK 291

Query: 199 FRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
            R    + DV++Y+++ +  C   R  +A ++   M  RGL P +TTY  +L+GY   G 
Sbjct: 292 MRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGA 351

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           + E       M +     D   ++ ++  +   G++ +A  VF  M   G+ P+  TY A
Sbjct: 352 LVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGA 411

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           +I +LCK   VE+A+L FE+M+ +G  P +  YN +I GLC   + ERA E +  M D  
Sbjct: 412 VIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRG 471

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
              N   +N +I   C  G +    +LFE M      PN+ TYN LI+   +  K D+  
Sbjct: 472 ICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDE-- 529

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNG 464
            A KLL  MV  G  P   T++ ++NG
Sbjct: 530 -AMKLLSGMVSVGLKPNTVTYSTLING 555



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 192/376 (51%), Gaps = 21/376 (5%)

Query: 116 LRDYRTVWTLVHRMKSLSL------GPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           L+ Y T   LV     L L       P    F+I+   Y + GK D+A+ +F  M + G 
Sbjct: 343 LQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGL 402

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
             +  ++  ++ +LCK  +VE A   F ++         I YN + +G C   +  +A E
Sbjct: 403 NPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEE 462

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           ++ EM+DRG+  N   +N ++  + + G++ E+ + F  M +   + +V+TY T+++G+ 
Sbjct: 463 LILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYC 522

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
           + G++  A  +  GMV+ G+ P+  TY+ +I   CK   +E+A+++F+EM   G  P+  
Sbjct: 523 LAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDII 582

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           TYN++++GL  T     A E   R+ +   +  + TYNI++   C     +  L++F+ +
Sbjct: 583 TYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNL 642

Query: 409 GSGVCLPNLD----TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
               CL +L     T+NI+I ++    ++D+   A  L +     G +P  +T+  +   
Sbjct: 643 ----CLMDLKLEARTFNIMIDALLKVGRNDE---AKDLFVAFSSNGLVPNYWTYRLMAEN 695

Query: 465 LLLIGNQGLAKEILRL 480
           ++    QGL +E+ +L
Sbjct: 696 II---GQGLLEELDQL 708



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 177/352 (50%), Gaps = 17/352 (4%)

Query: 117 RDYRTVWT-LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ---S 172
            D R V+  L+ R +  S+    +  A +A    +A     AV  +  M   G  +    
Sbjct: 32  EDARHVFDELLRRGRGASIYGLNRALADVARDSPAA-----AVSRYNRMARAGADEVTPD 86

Query: 173 LNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNKALE-VL 230
           L ++  ++   C+  +++  +  L  V +  F+ D I++  +  G C  KRT+ A++ VL
Sbjct: 87  LCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVL 146

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK---CEIDVVTYTTIVHGF 287
           + M + G  PN+ +YNI+LKG     + +EA      M   +      DVV+YTT+++GF
Sbjct: 147 RRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGF 206

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
              G+  +A + +  M++ G+LP V TYN++I  LCK  +++ A+ V   MV  G MP+ 
Sbjct: 207 FKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDC 266

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
            TYN ++ G C +G+ + A+ F+ +M+ D  EP+V TY++L+ Y C  G      ++F+ 
Sbjct: 267 MTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDS 326

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
           M      P + TY  L+     +     L+    LL  MV  G  P  + F+
Sbjct: 327 MTKRGLKPEITTYGTLLQGYATKGA---LVEMHGLLDLMVRNGIHPDHYVFS 375



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 173/342 (50%), Gaps = 4/342 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
            + +M+S  + P   T++++ +     G+   A KIF SM + G +  + ++ T+L    
Sbjct: 288 FLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYA 347

Query: 185 KEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            +  + + + L  +  R     D   ++++   +    + ++A+ V  +M  +GLNPN  
Sbjct: 348 TKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAV 407

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY  V+    ++G++E+A  +F +M         + Y +++HG     + +RA  +   M
Sbjct: 408 TYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEM 467

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           ++ G+  +   +N++I   CK+  V  +  +FE MV  G  PN  TYN +I G C  G+M
Sbjct: 468 LDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKM 527

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A++ +  M     +PN  TY+ LI  +C    +E  L LF++M S    P++ TYNI+
Sbjct: 528 DEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNII 587

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           +  +F  +++     A +L + + + G      T+N +L+GL
Sbjct: 588 LQGLFQTRRT---AAAKELYVRITESGTQIELSTYNIILHGL 626



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 114/400 (28%), Positives = 170/400 (42%), Gaps = 79/400 (19%)

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR----GKFKADVISYNVIANGW-- 217
           M E GC  ++ S+N +L  LC E + ++A  L  +      G    DV+SY  + NG+  
Sbjct: 149 MTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFK 208

Query: 218 ---------------------------------CLVKRTNKALEVLKEMVDRGLNPNLTT 244
                                            C  +  +KA+EVL  MV  G+ P+  T
Sbjct: 209 EGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMT 268

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           YN +L GY  +GQ +EA  F  +M+    E DVVTY+ ++      G    AR +FD M 
Sbjct: 269 YNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMT 328

Query: 305 NGGVLPSVATYNAMIQ--------------------------------VLC---KKDSVE 329
             G+ P + TY  ++Q                                ++C    +  V+
Sbjct: 329 KRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVD 388

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
            A+LVF +M  +G  PN+ TY  VI  LC +G +E A+ +  +M D+   P    YN LI
Sbjct: 389 QAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLI 448

Query: 390 RYFCDAGEIERGLEL-FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
              C   + ER  EL  E +  G+CL N   +N +I S     K   ++ + KL   MV 
Sbjct: 449 HGLCTCNKWERAEELILEMLDRGICL-NTIFFNSIIDS---HCKEGRVIESEKLFELMVR 504

Query: 449 RGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            G  P   T+N ++NG  L G    A ++L      G  P
Sbjct: 505 IGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKP 544



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 145/305 (47%), Gaps = 1/305 (0%)

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186
            +M    L P    +  +     +  K +RA ++ L M + G   +   FN+I+D  CKE
Sbjct: 430 EQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKE 489

Query: 187 KKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
            +V ++  LF++  R   K +VI+YN + NG+CL  + ++A+++L  MV  GL PN  TY
Sbjct: 490 GRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTY 549

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           + ++ GY +  ++E+A   F EM+      D++TY  I+ G         A+ ++  +  
Sbjct: 550 STLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITE 609

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G    ++TYN ++  LCK    ++A+ +F+ +        + T+N++I  L   G  + 
Sbjct: 610 SGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDE 669

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           A +       +   PN  TY ++       G +E   +LF  M    C  +    N ++ 
Sbjct: 670 AKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVR 729

Query: 426 SMFVR 430
            +  R
Sbjct: 730 ELLQR 734



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/396 (23%), Positives = 171/396 (43%), Gaps = 43/396 (10%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           +  + R  +  + P   T+ I+      AG+ D       ++ + G R    +F  +L  
Sbjct: 72  YNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKG 131

Query: 183 LCKEKKVEKAYNLF--KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR---G 237
           LC +K+   A ++   ++       +V SYN++  G C   R+ +ALE+L  M D    G
Sbjct: 132 LCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGG 191

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
             P++ +Y  V+ G+F+ G  ++A+  + EM  R    DVVTY +I+        + +A 
Sbjct: 192 SPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAM 251

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
            V + MV  GV+P   TYN+++   C     + AI   ++M   G  P+  TY++++  L
Sbjct: 252 EVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYL 311

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTY-------------------------------- 385
           C  G    A +    M     +P + TY                                
Sbjct: 312 CKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDH 371

Query: 386 ---NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
              +ILI  + + G++++ + +F KM      PN  TY  +I  +    + +D ++    
Sbjct: 372 YVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAML---Y 428

Query: 443 LIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
             +M+D G  P    +N +++GL        A+E++
Sbjct: 429 FEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELI 464



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 123/266 (46%), Gaps = 1/266 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L   M  + + P   T+  +   Y  AGK D A+K+   M   G + +  +++T+++  C
Sbjct: 498 LFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYC 557

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  ++E A  LFK         D+I+YN+I  G    +RT  A E+   + + G    L+
Sbjct: 558 KISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELS 617

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYNI+L G  +    ++A + F  +     +++  T+  ++     VG    A+++F   
Sbjct: 618 TYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAF 677

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            + G++P+  TY  M + +  +  +E    +F  M   G   +S   N ++R L   GE+
Sbjct: 678 SSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEI 737

Query: 364 ERALEFVGRMKDDECEPNVQTYNILI 389
            RA  ++  + +        T ++ I
Sbjct: 738 TRAGTYLSMIDEKHFSLEASTASLFI 763



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 124/293 (42%), Gaps = 42/293 (14%)

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
           + P+L TY I++    RAG+++  +     + K+   +D + +T ++ G         A 
Sbjct: 83  VTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAM 142

Query: 298 N-VFDGMVNGGVLPSVATYNAMIQVLC--------------------------------- 323
           + V   M   G +P+V +YN +++ LC                                 
Sbjct: 143 DIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTV 202

Query: 324 -----KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
                K+   + A   + EM+ +G +P+  TYN +I  LC    M++A+E +  M  +  
Sbjct: 203 INGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGV 262

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
            P+  TYN ++  +C +G+ +  +   +KM S    P++ TY++L+  +    K+   + 
Sbjct: 263 MPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLC---KNGRCME 319

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           A K+   M  RG  P   T+  +L G    G       +L L  R G  P  +
Sbjct: 320 ARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHY 372


>gi|302759663|ref|XP_002963254.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
 gi|300168522|gb|EFJ35125.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
          Length = 495

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/296 (32%), Positives = 151/296 (51%), Gaps = 4/296 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+ I+        K D A+++   M       +    N ++  LCK  KV+ AY L
Sbjct: 70  PNIYTYGIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAAYEL 129

Query: 196 FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
           +K    +   D ISYN++  G C   + ++AL V  EM +  + P+L TYN +L GY RA
Sbjct: 130 YKRLSDECSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRA 189

Query: 256 GQIEEAWRFFLEMKKRKCEIDVV----TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
           G++E+A     EM + K   DVV    +Y T++ GF    ++  AR V   M+  G  P+
Sbjct: 190 GRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPN 249

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
           V T+N ++  LC    ++ A  +FE MV +   P + TY V+I G      +++A ++  
Sbjct: 250 VVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFV 309

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
            M     EPNV TY  LI   CDA ++E  LE+ ++M S    PN+ TY  +I ++
Sbjct: 310 DMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTYTRVIGAL 365



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 95/310 (30%), Positives = 155/310 (50%), Gaps = 22/310 (7%)

Query: 107 DHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE 166
           D A +L  RL D  ++  + + M +  L                A + DRA+ +F  M E
Sbjct: 124 DAAYELYKRLSDECSLDRISYNMLTYGL--------------CKADQIDRALAVFGEMEE 169

Query: 167 HGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVI----SYNVIANGWCLVK 221
           +    SL ++N +L   C+  ++E+A  L + +  GK  +DV+    SYN + +G+C  +
Sbjct: 170 NAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKAR 229

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
           +   A  VL+ M+  G +PN+ T+N +L G    G+++EA   F  M +R CE   VTYT
Sbjct: 230 QLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYT 289

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
            ++ G      I +A + F  M+  GV P+V TY A+I  LC  + VE+A+ + + M   
Sbjct: 290 VLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSST 349

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRM---KDDECEPNVQTYNILIRYFCDAGEI 398
           G  PN  TY  VI  LC  G++ERA +        +  +C+P+   Y+ +I + C   + 
Sbjct: 350 GREPNVVTYTRVIGALCKGGQIERATKLFNDAMGSRTAKCKPDSYAYSTIIYWLCRQSKF 409

Query: 399 ERGLELFEKM 408
               E F +M
Sbjct: 410 LEAYEYFLRM 419



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 155/319 (48%), Gaps = 9/319 (2%)

Query: 175 SFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           ++N  L+ L K     KA  +F  +   +   ++ +Y ++  G C   +T+ ALE+L++M
Sbjct: 39  TYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTYGIVLRGLCDDAKTDAALELLQDM 98

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
             + L P     N+++    + G+++ A+  +  +   +C +D ++Y  + +G     +I
Sbjct: 99  ESKMLTPTTFIVNMLVSCLCKNGKVDAAYELYKRLSD-ECSLDRISYNMLTYGLCKADQI 157

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV----GKGYMPNSTT 349
            RA  VF  M    V+PS+ TYN ++   C+   +E A+ + EEM+    G   +P+  +
Sbjct: 158 DRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYS 217

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
           YN VI G C   ++  A   + RM    C PNV T+N L+   C  G+++    +FE M 
Sbjct: 218 YNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYMV 277

Query: 410 SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
              C P   TY +LI+      + D    A    ++M+ RG  P  +T+  ++ GL    
Sbjct: 278 ERNCEPTAVTYTVLITGHARALRIDK---ANDYFVDMLRRGVEPNVYTYTALIGGLCDAN 334

Query: 470 NQGLAKEILRLQSRCGRLP 488
               A EIL+  S  GR P
Sbjct: 335 KVEDALEILKRMSSTGREP 353



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 152/328 (46%), Gaps = 10/328 (3%)

Query: 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADV 207
           V  G   +A KIF  M    C  ++ ++  +L  LC + K + A  L +    K      
Sbjct: 48  VKGGHGSKARKIFDDMLYKECLPNIYTYGIVLRGLCDDAKTDAALELLQDMESKMLTPTT 107

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
              N++ +  C   + + A E+ K + D   + +  +YN++  G  +A QI+ A   F E
Sbjct: 108 FIVNMLVSCLCKNGKVDAAYELYKRLSDE-CSLDRISYNMLTYGLCKADQIDRALAVFGE 166

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG----GVLPSVATYNAMIQVLC 323
           M++      ++TY  +++G+   G +++A  + + M+ G     V+P + +YN +I   C
Sbjct: 167 MEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFC 226

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
           K   +  A  V   M+  G  PN  T+N ++ GLC TG+++ A      M +  CEP   
Sbjct: 227 KARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAV 286

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
           TY +LI     A  I++  + F  M      PN+ TY  LI  +    K +D L   ++L
Sbjct: 287 TYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDAL---EIL 343

Query: 444 IEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
             M   G  P   T+ RV+ G L  G Q
Sbjct: 344 KRMSSTGREPNVVTYTRVI-GALCKGGQ 370



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 108/235 (45%), Gaps = 43/235 (18%)

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
           E  V TY   ++     G   +AR +FD M+    LP++ TY  +++ LC     + A+ 
Sbjct: 34  EHTVFTYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTYGIVLRGLCDDAKTDAALE 93

Query: 334 VFEEMVGKGYMPNS----------------------------------TTYNVVIRGLCH 359
           + ++M  K   P +                                   +YN++  GLC 
Sbjct: 94  LLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAAYELYKRLSDECSLDRISYNMLTYGLCK 153

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-----GSGVCL 414
             +++RAL   G M+++   P++ TYN L+  +C AG +E+ + L E+M     GS V +
Sbjct: 154 ADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDV-V 212

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
           P++ +YN +IS      K+  L  A  +L  M+  G  P   TFN +L+GL L G
Sbjct: 213 PDMYSYNTVISGFC---KARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTG 264



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 103/236 (43%), Gaps = 7/236 (2%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S++  I    + R   T   ++ RM      P   TF  + +     GK D A  +F  M
Sbjct: 217 SYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYM 276

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
            E  C  +  ++  ++    +  +++KA + F  + R   + +V +Y  +  G C   + 
Sbjct: 277 VERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKV 336

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF---LEMKKRKCEIDVVTY 280
             ALE+LK M   G  PN+ TY  V+    + GQIE A + F   +  +  KC+ D   Y
Sbjct: 337 EDALEILKRMSSTGREPNVVTYTRVIGALCKGGQIERATKLFNDAMGSRTAKCKPDSYAY 396

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM---IQVLCKKDSVENAIL 333
           +TI++      +   A   F  MV   ++     Y AM   ++++ + + VE   L
Sbjct: 397 STIIYWLCRQSKFLEAYEYFLRMVESKLVAKPHIYKAMADGLELVQETEKVERVCL 452



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 82/168 (48%), Gaps = 4/168 (2%)

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           +V TYNA +  L K      A  +F++M+ K  +PN  TY +V+RGLC   + + ALE +
Sbjct: 36  TVFTYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTYGIVLRGLCDDAKTDAALELL 95

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
             M+     P     N+L+   C  G+++   EL++++     L  + +YN+L   +   
Sbjct: 96  QDMESKMLTPTTFIVNMLVSCLCKNGKVDAAYELYKRLSDECSLDRI-SYNMLTYGLC-- 152

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
            K+D +  A  +  EM +   +P   T+N +L G    G    A  +L
Sbjct: 153 -KADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLL 199



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
           R  ++  R +D   E  V TYN  +      G   +  ++F+ M    CLPN+ TY I++
Sbjct: 22  RVFKWAARQED--FEHTVFTYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTYGIVL 79

Query: 425 SSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL-RLQSR 483
             +    K+D  L   +LL +M  +   P  F  N +++ L   G    A E+  RL   
Sbjct: 80  RGLCDDAKTDAAL---ELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAAYELYKRLSDE 136

Query: 484 CG 485
           C 
Sbjct: 137 CS 138


>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 526

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 172/309 (55%), Gaps = 4/309 (1%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           +L ++M++  + P    +  +     ++G+   A  +   M +   +  + +FN ++D  
Sbjct: 197 SLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAF 256

Query: 184 CKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
            KE K+  A  L+ ++ +     ++ +Y  + NG C+  R ++A ++   M  +G  P++
Sbjct: 257 VKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDV 316

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
             Y  ++ G+ +  ++E+A + F EM ++    + +TYTT++ GFG+VG+   A+ VF  
Sbjct: 317 VAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGH 376

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK---GYMPNSTTYNVVIRGLCH 359
           MV+ GV P++ TYN ++  LC    V  A+++FE+M  +   G  PN  TYNV++ GLC+
Sbjct: 377 MVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCY 436

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419
            G++E+AL   G M+  + +  + TY I+I+  C AG+++  L LF  + S    PN+ T
Sbjct: 437 NGKLEKALMVFGDMQKRDMDIGIITYTIIIQGMCKAGKVKDALNLFCSLPSKGVKPNVVT 496

Query: 420 YNILISSMF 428
           Y  +IS +F
Sbjct: 497 YTTMISGLF 505



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 162/325 (49%), Gaps = 7/325 (2%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           + + ++  L   P   TF  +   +    + + A+ +   M E G +  +  + TI+D L
Sbjct: 127 SFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTIIDSL 186

Query: 184 CKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CK   V+ A +LF        + DV+ Y  + NG C   R   A  +L+ M+ R + P++
Sbjct: 187 CKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKPDV 246

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            T+N ++  + + G++ +A   + EM +     ++ TYT++++G  + G +  AR +F  
Sbjct: 247 ITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYL 306

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M   G  P V  Y ++I   CK   VE+A+ +F EM  KG   N+ TY  +I+G    G+
Sbjct: 307 METKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGK 366

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG----SGVCLPNLD 418
              A E  G M      PN++TYN+L+   C  G++ + L +FE M      GV  PN+ 
Sbjct: 367 PNVAQEVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGV-PPNIR 425

Query: 419 TYNILISSMFVRKKSDD-LLVAGKL 442
           TYN+L+  +    K +  L+V G +
Sbjct: 426 TYNVLLHGLCYNGKLEKALMVFGDM 450



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 173/362 (47%), Gaps = 17/362 (4%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
            F+ A+DL + + + R + +++   + L++    K F             D  + +   +
Sbjct: 51  QFNEALDLFSHMVESRPLPSIIDFTRLLNVIAKMKKF-------------DVVINLCKHL 97

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRT 223
              G    L + N +++  C+  +   A + L K+ +  F+ D+ ++  + NG+CL  R 
Sbjct: 98  QIMGVSNDLYTCNLLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRI 157

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A+ ++ +MV+ G+ P++  Y  ++    + G ++ A   F +M+      DVV YT++
Sbjct: 158 EEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSL 217

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           V+G    G  + A  +  GM+   + P V T+NA+I    K+  + +A  ++ EM+    
Sbjct: 218 VNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSI 277

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN  TY  +I GLC  G ++ A +    M+   C P+V  Y  LI  FC   ++E  ++
Sbjct: 278 APNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMK 337

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           +F +M       N  TY  LI    +  K +   VA ++   MV RG  P   T+N +L+
Sbjct: 338 IFYEMSQKGLTGNTITYTTLIQGFGLVGKPN---VAQEVFGHMVSRGVPPNIRTYNVLLH 394

Query: 464 GL 465
            L
Sbjct: 395 CL 396



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 86/278 (30%), Positives = 137/278 (49%), Gaps = 8/278 (2%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  ID   +         L + M  +S+ P   T+  +       G+ D A ++F  M
Sbjct: 248 TFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLM 307

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
              GC   + ++ ++++  CK KKVE A  +F     K    + I+Y  +  G+ LV + 
Sbjct: 308 ETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKP 367

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV----- 278
           N A EV   MV RG+ PN+ TYN++L      G++ +A   F +M+KR  EID V     
Sbjct: 368 NVAQEVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKR--EIDGVPPNIR 425

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TY  ++HG    G++++A  VF  M    +   + TY  +IQ +CK   V++A+ +F  +
Sbjct: 426 TYNVLLHGLCYNGKLEKALMVFGDMQKRDMDIGIITYTIIIQGMCKAGKVKDALNLFCSL 485

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
             KG  PN  TY  +I GL   G M  A     +MK+D
Sbjct: 486 PSKGVKPNVVTYTTMISGLFREGLMLEAHVLFRKMKED 523



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 117/265 (44%), Gaps = 3/265 (1%)

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           N+AL++   MV+    P++  +  +L    +  + +        ++      D+ T   +
Sbjct: 53  NEALDLFSHMVESRPLPSIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCNLL 112

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++ F    +   A +    ++  G  P + T+ ++I   C  + +E A+ +  +MV  G 
Sbjct: 113 MNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGI 172

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+   Y  +I  LC  G ++ AL    +M++    P+V  Y  L+   C++G       
Sbjct: 173 KPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADL 232

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           L   M      P++ T+N LI + FV  K   LL A +L  EM+     P  FT+  ++N
Sbjct: 233 LLRGMMKRKIKPDVITFNALIDA-FV--KEGKLLDAKELYNEMIQMSIAPNIFTYTSLIN 289

Query: 464 GLLLIGNQGLAKEILRLQSRCGRLP 488
           GL + G    A+++  L    G  P
Sbjct: 290 GLCMEGRLDEARQMFYLMETKGCFP 314



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 100/208 (48%), Gaps = 4/208 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   I+   + +       + + M    L     T+  + + +   GK + A ++F  M
Sbjct: 318 AYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHM 377

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK----FKADVISYNVIANGWCLV 220
              G   ++ ++N +L  LC   KV KA  +F+  + +       ++ +YNV+ +G C  
Sbjct: 378 VSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCYN 437

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
            +  KAL V  +M  R ++  + TY I+++G  +AG++++A   F  +  +  + +VVTY
Sbjct: 438 GKLEKALMVFGDMQKRDMDIGIITYTIIIQGMCKAGKVKDALNLFCSLPSKGVKPNVVTY 497

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           TT++ G    G +  A  +F  M   GV
Sbjct: 498 TTMISGLFREGLMLEAHVLFRKMKEDGV 525



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 87/201 (43%), Gaps = 8/201 (3%)

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
           +   A ++F  MV    LPS+  +  ++ V+ K    +  I + + +   G   +  T N
Sbjct: 51  QFNEALDLFSHMVESRPLPSIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCN 110

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
           +++   C + +   A  F+G++     EP++ T+  LI  FC    IE  + +  +M   
Sbjct: 111 LLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEM 170

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
              P++  Y  +I S+      D+ L    L  +M + G  P    +  ++NGL   G  
Sbjct: 171 GIKPDVVIYTTIIDSLCKNGHVDNAL---SLFNQMENYGIRPDVVMYTSLVNGLCNSGRW 227

Query: 472 GLAKEILRLQSRCGRLPRQFK 492
             A  +LR     G + R+ K
Sbjct: 228 RDADLLLR-----GMMKRKIK 243


>gi|302785562|ref|XP_002974552.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
 gi|300157447|gb|EFJ24072.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
          Length = 495

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/296 (32%), Positives = 151/296 (51%), Gaps = 4/296 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+ I+        K D A+++   M       +    N ++  LCK  KV+ AY L
Sbjct: 70  PNIYTYGIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAAYEL 129

Query: 196 FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
           +K    +   D ISYN++  G C   + ++AL V  EM +  + P+L TYN +L GY RA
Sbjct: 130 YKRLSDECSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRA 189

Query: 256 GQIEEAWRFFLEMKKRKCEIDVV----TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
           G++E+A     EM + K   DVV    +Y T++ GF    ++  AR V   M+  G  P+
Sbjct: 190 GRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPN 249

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
           V T+N ++  LC    ++ A  +FE MV +   P + TY V+I G      +++A ++  
Sbjct: 250 VVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFV 309

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
            M     EPNV TY  LI   CDA ++E  LE+ ++M S    PN+ TY  +I ++
Sbjct: 310 DMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTYTRVIGAL 365



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 155/310 (50%), Gaps = 22/310 (7%)

Query: 107 DHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE 166
           D A +L  RL D  ++  + + M +  L                A + DRA+ +F  M E
Sbjct: 124 DAAYELYKRLSDECSLDRISYNMLTYGL--------------CKADQIDRALAVFGEMEE 169

Query: 167 HGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVI----SYNVIANGWCLVK 221
           +    SL ++N +L   C+  ++E+A  L + +  GK  +DV+    SYN + +G+C  +
Sbjct: 170 NAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKAR 229

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
           +   A  VL+ M+  G +PN+ T+N +L G    G+++EA   F  M +R CE   VTYT
Sbjct: 230 QLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYT 289

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
            ++ G      I +A + F  M+  GV P+V TY A+I  LC  + VE+A+ + + M   
Sbjct: 290 VLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSST 349

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRM---KDDECEPNVQTYNILIRYFCDAGEI 398
           G  PN  TY  VI  LC  G++ERA +        +  +C+P+   Y+ ++ + C   + 
Sbjct: 350 GREPNVVTYTRVIGALCKGGQIERATKLFNDAMGSRTAKCKPDSYAYSTIVYWLCRQSKF 409

Query: 399 ERGLELFEKM 408
               E F +M
Sbjct: 410 LEAYEYFLRM 419



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 158/324 (48%), Gaps = 9/324 (2%)

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALE 228
           + ++ ++N  L+ L K     KA  +F  +   +   ++ +Y ++  G C   +T+ ALE
Sbjct: 34  QHTVFTYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTYGIVLRGLCDDAKTDAALE 93

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           +L++M  + L P     N+++    + G+++ A+  +  +   +C +D ++Y  + +G  
Sbjct: 94  LLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAAYELYKRLSD-ECSLDRISYNMLTYGLC 152

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV----GKGYM 344
              +I RA  VF  M    V+PS+ TYN ++   C+   +E A+ + EEM+    G   +
Sbjct: 153 KADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVV 212

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           P+  +YN VI G C   ++  A   + RM    C PNV T+N L+   C  G+++    +
Sbjct: 213 PDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAM 272

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           FE M    C P   TY +LI+      + D    A    ++M+ RG  P  +T+  ++ G
Sbjct: 273 FEYMVERNCEPTAVTYTVLITGHARALRIDK---ANDYFVDMLRRGVEPNVYTYTALIGG 329

Query: 465 LLLIGNQGLAKEILRLQSRCGRLP 488
           L        A EIL+  S  GR P
Sbjct: 330 LCDANKVEDALEILKRMSSTGREP 353



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 167/376 (44%), Gaps = 27/376 (7%)

Query: 102 SPSSFDHAIDLAARLRDYR-TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           SP         AAR  D++ TV+T    + +L                V  G   +A KI
Sbjct: 16  SPKLASRVFKWAARQEDFQHTVFTYNAYLNAL----------------VKGGHGSKARKI 59

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCL 219
           F  M    C  ++ ++  +L  LC + K + A  L +    K         N++ +  C 
Sbjct: 60  FDDMLYKECLPNIYTYGIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLCK 119

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
             + + A E+ K + D   + +  +YN++  G  +A QI+ A   F EM++      ++T
Sbjct: 120 NGKVDAAYELYKRLSDE-CSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLT 178

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNG----GVLPSVATYNAMIQVLCKKDSVENAILVF 335
           Y  +++G+   G +++A  + + M+ G     V+P + +YN +I   CK   +  A  V 
Sbjct: 179 YNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVL 238

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
             M+  G  PN  T+N ++ GLC TG+++ A      M +  CEP   TY +LI     A
Sbjct: 239 RRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARA 298

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
             I++  + F  M      PN+ TY  LI  +    K +D L   ++L  M   G  P  
Sbjct: 299 LRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDAL---EILKRMSSTGREPNV 355

Query: 456 FTFNRVLNGLLLIGNQ 471
            T+ RV+ G L  G Q
Sbjct: 356 VTYTRVI-GALCKGGQ 370



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 103/236 (43%), Gaps = 7/236 (2%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S++  I    + R   T   ++ RM      P   TF  + +     GK D A  +F  M
Sbjct: 217 SYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYM 276

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
            E  C  +  ++  ++    +  +++KA + F  + R   + +V +Y  +  G C   + 
Sbjct: 277 VERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKV 336

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF---LEMKKRKCEIDVVTY 280
             ALE+LK M   G  PN+ TY  V+    + GQIE A + F   +  +  KC+ D   Y
Sbjct: 337 EDALEILKRMSSTGREPNVVTYTRVIGALCKGGQIERATKLFNDAMGSRTAKCKPDSYAY 396

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM---IQVLCKKDSVENAIL 333
           +TIV+      +   A   F  MV   ++     Y AM   ++++ + + VE   L
Sbjct: 397 STIVYWLCRQSKFLEAYEYFLRMVESKLVAKPHIYKAMADGLELVQETEKVERVCL 452



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
           R  ++  R +D   +  V TYN  +      G   +  ++F+ M    CLPN+ TY I++
Sbjct: 22  RVFKWAARQED--FQHTVFTYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTYGIVL 79

Query: 425 SSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL-RLQSR 483
             +    K+D  L   +LL +M  +   P  F  N +++ L   G    A E+  RL   
Sbjct: 80  RGLCDDAKTDAAL---ELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAAYELYKRLSDE 136

Query: 484 CG 485
           C 
Sbjct: 137 CS 138


>gi|356561683|ref|XP_003549109.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 182/375 (48%), Gaps = 4/375 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           F++ +    + + Y TV +L  + +   + P   T +I+   +        A  +F ++ 
Sbjct: 64  FNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHLTHITFAFSVFANIL 123

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTN 224
           + G   +  + NT++  LC   ++++A +   KV    F+ D +SY  + NG C    T 
Sbjct: 124 KRGYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQLDQVSYGTLINGLCKAGETK 183

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
               +L+++    + P+L  Y  ++    +   + +A   + EM  +    +V TYTT++
Sbjct: 184 AVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVKGISPNVFTYTTLI 243

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
           HGF ++G +K A ++ + M    + P V T+N +I  L K+  ++ A+ +FEEM  K   
Sbjct: 244 HGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALAKEGKIDEAMSLFEEMKHKNMF 303

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           PN  TY  +I GLC    +ERA+    +MK+   +PNV +Y IL+   C  G +E   + 
Sbjct: 304 PNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPNVYSYTILLDALCKGGRLENAKQF 363

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           F+ +       N+ TYN++I+ +       D++    L  +M  +G MP   TF  ++  
Sbjct: 364 FQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVM---DLKSKMEGKGCMPNAITFKTIICA 420

Query: 465 LLLIGNQGLAKEILR 479
           LL       A++ LR
Sbjct: 421 LLEKDENDKAEKFLR 435



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 158/318 (49%), Gaps = 4/318 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T   + +     G+  RA+     +   G +    S+ T+++ LCK  + +    L
Sbjct: 129 PNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQLDQVSYGTLINGLCKAGETKAVARL 188

Query: 196 FKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            +   G   K D++ Y  I +  C  K    A ++  EM+ +G++PN+ TY  ++ G+  
Sbjct: 189 LRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVKGISPNVFTYTTLIHGFCI 248

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G ++EA+    EMK +    DV T+  ++      G+I  A ++F+ M +  + P++ T
Sbjct: 249 MGNLKEAFSLLNEMKLKNINPDVYTFNILIDALAKEGKIDEAMSLFEEMKHKNMFPNIVT 308

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y ++I  LCK   +E AI + ++M  +G  PN  +Y +++  LC  G +E A +F   + 
Sbjct: 309 YTSLIDGLCKNHHLERAIALCKKMKEQGIQPNVYSYTILLDALCKGGRLENAKQFFQHLL 368

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
                 NV+TYN++I   C AG     ++L  KM    C+PN  T+  +I ++  + ++D
Sbjct: 369 VKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPNAITFKTIICALLEKDEND 428

Query: 435 DLLVAGKLLIEMVDRGFM 452
               A K L EM+ RG +
Sbjct: 429 K---AEKFLREMIARGLL 443



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 103/213 (48%), Gaps = 1/213 (0%)

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
            + P   T+  +   +   G    A  +   M        + +FN ++D L KE K+++A
Sbjct: 231 GISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALAKEGKIDEA 290

Query: 193 YNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
            +LF+  + K    ++++Y  + +G C      +A+ + K+M ++G+ PN+ +Y I+L  
Sbjct: 291 MSLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPNVYSYTILLDA 350

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
             + G++E A +FF  +  +   ++V TY  +++G    G      ++   M   G +P+
Sbjct: 351 LCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPN 410

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
             T+  +I  L +KD  + A     EM+ +G +
Sbjct: 411 AITFKTIICALLEKDENDKAEKFLREMIARGLL 443



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 107/261 (40%), Gaps = 38/261 (14%)

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           P    +N +L    +  +       F + +      D+ T + +++ F  +  I  A +V
Sbjct: 59  PPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHLTHITFAFSV 118

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
           F  ++  G  P+  T N +I+ LC    ++ A+   +++V +G+  +  +Y  +I GLC 
Sbjct: 119 FANILKRGYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQLDQVSYGTLINGLCK 178

Query: 360 TGEMERALEFVGRMK------------------------DDECE-----------PNVQT 384
            GE +     + +++                         D C+           PNV T
Sbjct: 179 AGETKAVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVKGISPNVFT 238

Query: 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLI 444
           Y  LI  FC  G ++    L  +M      P++ T+NILI ++    K D+   A  L  
Sbjct: 239 YTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALAKEGKIDE---AMSLFE 295

Query: 445 EMVDRGFMPRKFTFNRVLNGL 465
           EM  +   P   T+  +++GL
Sbjct: 296 EMKHKNMFPNIVTYTSLIDGL 316



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 1/168 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  ID  A+        +L   MK  ++ P   T+  + +        +RA+ +   M
Sbjct: 273 TFNILIDALAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKM 332

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
            E G + ++ S+  +LD LCK  ++E A   F+    K +  +V +YNV+ NG C     
Sbjct: 333 KEQGIQPNVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLF 392

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
              +++  +M  +G  PN  T+  ++       + ++A +F  EM  R
Sbjct: 393 GDVMDLKSKMEGKGCMPNAITFKTIICALLEKDENDKAEKFLREMIAR 440


>gi|15227316|ref|NP_179280.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75217061|sp|Q9ZVX5.1|PP156_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g16880
 gi|3757517|gb|AAC64219.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|18175643|gb|AAL59902.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|20465657|gb|AAM20297.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251452|gb|AEC06546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/377 (28%), Positives = 183/377 (48%), Gaps = 7/377 (1%)

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
           R    L+  MKSL L P   T+  + +     G +  A K+   M   G + +  + N  
Sbjct: 327 REGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHNIS 386

Query: 180 LDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           L  LCKE+K E      K  V    F  D+++Y+ +   +  V   + ALE+++EM  +G
Sbjct: 387 LKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKG 446

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
           +  N  T N +L    +  +++EA        KR   +D VTY T++ GF    ++++A 
Sbjct: 447 IKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKAL 506

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
            ++D M    + P+V+T+N++I  LC     E A+  F+E+   G +P+ +T+N +I G 
Sbjct: 507 EMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGY 566

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
           C  G +E+A EF         +P+  T NIL+   C  G  E+ L  F  +     +  +
Sbjct: 567 CKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEEREVDTV 626

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
            TYN +IS+    KK   L  A  LL EM ++G  P +FT+N  ++ L+  G      E+
Sbjct: 627 -TYNTMISAFCKDKK---LKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETDEL 682

Query: 478 L-RLQSRCGRLPRQFKL 493
           L +   + G + R  ++
Sbjct: 683 LKKFSGKFGSMKRDLQV 699



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 170/351 (48%), Gaps = 15/351 (4%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           +L+H    LS  P++  F I    Y+  GK   A++IF  M     + +L + NT+L  L
Sbjct: 117 SLLHPNLHLSPPPSKALFDIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGL 176

Query: 184 CKEKKVEKAYNLFKVFRGKFKA----DVISYNVIANGWCLVKRTNKALEVLKEMVDR-GL 238
            +        +  +VF    K     +V ++NV+ NG+CL  +   AL +L+ MV    +
Sbjct: 177 VRYPSSFSISSAREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKV 236

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
           NP+  TYN +LK   + G++ +     L+MKK     + VTY  +V+G+  +G +K A  
Sbjct: 237 NPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQ 296

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
           + + M    VLP + TYN +I  LC   S+   + + + M      P+  TYN +I G  
Sbjct: 297 IVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCF 356

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE----RGLELFEKMGSGVCL 414
             G    A + + +M++D  + N  T+NI +++ C   + E    +  EL +  G     
Sbjct: 357 ELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFS--- 413

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           P++ TY+ LI +     K  DL  A +++ EM  +G      T N +L+ L
Sbjct: 414 PDIVTYHTLIKAYL---KVGDLSGALEMMREMGQKGIKMNTITLNTILDAL 461



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 9/151 (5%)

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL----IRYFCDAGEIER 400
           P+   +++ +    H G+   AL+   +M   + +PN+ T N L    +RY   +  I  
Sbjct: 129 PSKALFDIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRY-PSSFSISS 187

Query: 401 GLELFEKMGS-GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
             E+F+ M   GV L N+ T+N+L++   +  K +D L  G L   + +    P   T+N
Sbjct: 188 AREVFDDMVKIGVSL-NVQTFNVLVNGYCLEGKLEDAL--GMLERMVSEFKVNPDNVTYN 244

Query: 460 RVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
            +L  +   G     KE+L    + G +P +
Sbjct: 245 TILKAMSKKGRLSDLKELLLDMKKNGLVPNR 275


>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
 gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
          Length = 820

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 164/339 (48%), Gaps = 8/339 (2%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA-YNLFKV 198
           ++A + E +   G+ D A+++F  + +      + +   ++  LC  ++ E+  Y L K+
Sbjct: 201 SYAALIEGFCETGRVDEALELFRELEQ----PDMYTHAALVKGLCDARRGEEGLYMLQKM 256

Query: 199 FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
               ++    +Y  + + WC  ++  +A ++L EM D GL P   T   V+  Y R G++
Sbjct: 257 KELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRM 316

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
             A R F  MK + CE +V TY  +V GF  VG++ +A  + D M   GV P V TYN +
Sbjct: 317 SGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLL 376

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           I+  C    +E+A  +   M G G   +  TYNV+I  LC TG+++ A      ++    
Sbjct: 377 IRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGI 436

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
            PN  T+N +I   C  G+ +      EKM S  C P+  TY+  I ++   K S + L 
Sbjct: 437 RPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREGL- 495

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
               + EM+ +   P    +  V++ L    N GLA  I
Sbjct: 496 --SFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRI 532



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 100/359 (27%), Positives = 167/359 (46%), Gaps = 10/359 (2%)

Query: 135 GPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN 194
            PT  T+  +            A +    M   G R    +FN+++   C+ ++++ A +
Sbjct: 126 APTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLDVAQD 185

Query: 195 LFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
           LF     RG F  D +SY  +  G+C   R ++ALE+ +E+      P++ T+  ++KG 
Sbjct: 186 LFDKMPLRG-FSQDAVSYAALIEGFCETGRVDEALELFRELE----QPDMYTHAALVKGL 240

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
             A + EE      +MK+         Y  +V  +    + + A  + + M + G++P  
Sbjct: 241 CDARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCA 300

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            T  A++   C++  +  A+ VFE M  KG  PN  TYN +++G C+ G++ +A+  + +
Sbjct: 301 VTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQ 360

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           M++   EP+V TYN+LIR  C  G IE    L   M       +  TYN+LI ++    K
Sbjct: 361 MRECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGK 420

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
            D+   A  L   +  RG  P   TFN V+NGL   G   +A   L      G  P  +
Sbjct: 421 VDE---ACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTY 476



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 155/350 (44%), Gaps = 4/350 (1%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           +DL  R +       +++ M    L P   T   +   Y   G+   AV++F SM   GC
Sbjct: 272 VDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGC 331

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALE 228
             ++ ++N ++   C   KV KA  L    R    + DV++YN++  G C+      A  
Sbjct: 332 EPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAFR 391

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           +L+ M   GL  +  TYN+++    + G+++EA   F  ++ R    + VT+ T+++G  
Sbjct: 392 LLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLC 451

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G+   A    + MV+ G  P   TY+  I+ LCK       +   +EM+ K   P++ 
Sbjct: 452 KGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQKDVKPSTV 511

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            Y +VI  L        A    G+M    C P+V TY   +R +C+ G +     +  +M
Sbjct: 512 NYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVMEM 571

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
             G  + +   YN LI       K+D    A  +L  M     MP  FTF
Sbjct: 572 KKGGIIVDAMAYNTLIDGHTSIGKTDH---AVTILKHMTGVASMPNHFTF 618



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 137/309 (44%), Gaps = 1/309 (0%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           MK     P   T+  + + + + GK  +A+ +   M E G    + ++N ++   C +  
Sbjct: 326 MKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGH 385

Query: 189 VEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           +E A+ L ++  G    AD  +YNV+ +  C   + ++A  +   +  RG+ PN  T+N 
Sbjct: 386 IESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNT 445

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           V+ G  + G+ + A  F  +M    C  D  TY+  +         +   +  D M+   
Sbjct: 446 VINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQKD 505

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           V PS   Y  +I  L K+ +   A  ++ +MV  G  P+  TY   +R  C+ G +  A 
Sbjct: 506 VKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAE 565

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
             V  MK      +   YN LI      G+ +  + + + M     +PN  T+ IL+  +
Sbjct: 566 NVVMEMKKGGIIVDAMAYNTLIDGHTSIGKTDHAVTILKHMTGVASMPNHFTFFILLRHL 625

Query: 428 FVRKKSDDL 436
             R+ ++D+
Sbjct: 626 LQRRLAEDV 634



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/419 (21%), Positives = 169/419 (40%), Gaps = 57/419 (13%)

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
            + + L+  M+   L   Q T+ ++ +     GK D A  +F  +   G R +  +FNT+
Sbjct: 387 ESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTV 446

Query: 180 LDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM----- 233
           ++ LCK  K + A   L K+       D  +Y+      C  K + + L  + EM     
Sbjct: 447 INGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQKDV 506

Query: 234 ----------VDR--------------------GLNPNLTTYNIVLKGYFRAGQIEEAWR 263
                     +DR                    G +P++ TY   ++ Y   G++ EA  
Sbjct: 507 KPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAEN 566

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
             +EMKK    +D + Y T++ G   +G+   A  +   M     +P+  T+  +++ L 
Sbjct: 567 VVMEMKKGGIIVDAMAYNTLIDGHTSIGKTDHAVTILKHMTGVASMPNHFTFFILLRHLL 626

Query: 324 KKDSVENAIL-------------VFE--EMVGKGYMPNST-TYNVVIRGLCHTGEMERAL 367
           ++   E+  L             VFE  E++ K  +P+S   Y  ++ G      ++   
Sbjct: 627 QRRLAEDVPLKTTSVWKTIELADVFELFELMKKNSVPSSARAYLAILEGFSEERRLDEVT 686

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
             V  MK+D+   N   Y  L+  FC          L   M     LPNL +Y  L+S  
Sbjct: 687 SLVSHMKEDDLPLNEDIYTSLVNCFCKLRMYPDAWALLCSMIGHGFLPNLISYQYLLSGF 746

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL--QSRC 484
               ++D    A ++   +  + +   +  +  +++GL+  G+  +  +++ +  Q +C
Sbjct: 747 TAEGQADR---AKEIFRGLRWKEYNTDEIVWKIIIDGLIRQGHPDMCHDMISILEQMKC 802



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/343 (18%), Positives = 133/343 (38%), Gaps = 57/343 (16%)

Query: 98  TYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRA 157
           TY +SP      I+   + +  R   + +  M    + P+   + I+ +R         A
Sbjct: 475 TYTYSP-----FIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLA 529

Query: 158 VKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL-FKVFRGKFKADVISYNVIANG 216
            +I+  M   GC   + ++ T +   C E ++ +A N+  ++ +G    D ++YN + +G
Sbjct: 530 TRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNTLIDG 589

Query: 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTY--------------NIVLK--GYFRAGQIEE 260
              + +T+ A+ +LK M      PN  T+              ++ LK    ++  ++ +
Sbjct: 590 HTSIGKTDHAVTILKHMTGVASMPNHFTFFILLRHLLQRRLAEDVPLKTTSVWKTIELAD 649

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
            +  F  MKK         Y  I+ GF     +    ++   M    +  +   Y +++ 
Sbjct: 650 VFELFELMKKNSVPSSARAYLAILEGFSEERRLDEVTSLVSHMKEDDLPLNEDIYTSLVN 709

Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE------------ 368
             CK     +A  +   M+G G++PN  +Y  ++ G    G+ +RA E            
Sbjct: 710 CFCKLRMYPDAWALLCSMIGHGFLPNLISYQYLLSGFTAEGQADRAKEIFRGLRWKEYNT 769

Query: 369 -----------------------FVGRMKDDECEPNVQTYNIL 388
                                   +  ++  +C+P+ +TY +L
Sbjct: 770 DEIVWKIIIDGLIRQGHPDMCHDMISILEQMKCKPSDETYAML 812



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 34/191 (17%)

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
           +G   P+ ATYNA+I+ LC++  + +A      MV  G+ P++ T+N +I G C T +++
Sbjct: 122 HGPPAPTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLD 181

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS-----------GVC 413
            A +   +M       +  +Y  LI  FC+ G ++  LELF ++             G+C
Sbjct: 182 VAQDLFDKMPLRGFSQDAVSYAALIEGFCETGRVDEALELFRELEQPDMYTHAALVKGLC 241

Query: 414 --------------------LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
                                P    Y  L+      +K+++   A K+L EM D G +P
Sbjct: 242 DARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEE---AEKMLNEMFDNGLVP 298

Query: 454 RKFTFNRVLNG 464
              T   V+N 
Sbjct: 299 CAVTCTAVVNA 309


>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/379 (28%), Positives = 179/379 (47%), Gaps = 19/379 (5%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L   M +  L P    F  +       G    + ++   + + G   +L +FN  +  LC
Sbjct: 203 LFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLC 262

Query: 185 KEKKVEKAYN----------LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           +E  +++A            L K+  G F+ D ++YN I +G+C       A  VLK+ V
Sbjct: 263 REGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAV 322

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
            +G  P+  TY  ++ G+ + G  + A   F +   +     +V Y T++ G    G I 
Sbjct: 323 FKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLIL 382

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
            A  + + M   G LP++ TYN +I  LCK   V +A  + ++ + KG  P+  TYN +I
Sbjct: 383 PALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLI 442

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
            G C   +++ A E V RM      P+V TYN L+   C AG+ E  +E+F+ M    C 
Sbjct: 443 DGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCT 502

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           PN+ TYNI++ S+   KK ++   A  LL EM  +G  P   +F  +  G   IG+   A
Sbjct: 503 PNIITYNIIVDSLCKAKKVNE---AVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGA 559

Query: 475 KEILRLQSRCGRLPRQFKL 493
            ++ R      R+ +Q+ +
Sbjct: 560 YQLFR------RMEKQYDV 572



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 176/365 (48%), Gaps = 7/365 (1%)

Query: 109 AIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG 168
           A+D A R          + +M +    P   T+  I + Y   G    A ++       G
Sbjct: 266 ALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKG 325

Query: 169 CRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKAL 227
            +    ++ ++++  CK+   ++A  +FK   GK  +  ++ YN +  G         AL
Sbjct: 326 FKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPAL 385

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
           +++ EM + G  PN+ TYN+V+ G  + G + +A     +   + C  D+ TY T++ G+
Sbjct: 386 QLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGY 445

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
               ++  A  + + M + G+ P V TYN ++  LCK    E  + +F+ M  KG  PN 
Sbjct: 446 CKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNI 505

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
            TYN+++  LC   ++  A++ +G MK    +P+V ++  L   FC  G+I+   +LF +
Sbjct: 506 ITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRR 565

Query: 408 MGS--GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           M     VC     TYNI++S+     +  ++ +A KL   M + G  P  +T+  V++G 
Sbjct: 566 MEKQYDVCHTTA-TYNIIVSAF---SEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGF 621

Query: 466 LLIGN 470
             +GN
Sbjct: 622 CKMGN 626



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 106/413 (25%), Positives = 198/413 (47%), Gaps = 17/413 (4%)

Query: 69  PQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHR 128
           P+ V  ++K +    LKAL  FN       + H+ S++   +       ++  +  L+  
Sbjct: 7   PKHVAAVVK-IQTDPLKALEMFNSAKSEDGFKHTASTYKCIVQKLGHHGEFEEMEKLLSE 65

Query: 129 MK-SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           M+ +++    +  +    + Y   GK   AV  F  M  + C  S++S N I+++L +  
Sbjct: 66  MRENVNNALLEGAYIEAMKNYGRKGKVQEAVDTFERMDFYNCDPSVHSHNAIMNILVEFG 125

Query: 188 KVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
              +A+ ++   R +  ++DV +Y +    +C   R   AL +L+ M + G + N   Y 
Sbjct: 126 YHNQAHKVYMRMRDRGVQSDVYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYC 185

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
            V+ G + +G+ + A   F EM  R    DVV +  +VH     G +  +  +   ++  
Sbjct: 186 TVVAGLYDSGEHDHARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKR 245

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAIL---------VFEEMVGKGYMPNSTTYNVVIRGL 357
           GV P++ T+N  +Q LC++ +++ A+             +MV  G+ P+  TYN +I G 
Sbjct: 246 GVCPNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGY 305

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF-EKMGSGVCLPN 416
           C  G ++ A   +        +P+  TY  LI  FC  G+ +R + +F + +G G+  P+
Sbjct: 306 CKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGL-RPS 364

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
           +  YN LI  +    +   +L A +L+ EM + G +P  +T+N V+NGL  +G
Sbjct: 365 IVLYNTLIKGL---SQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMG 414



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 114/500 (22%), Positives = 206/500 (41%), Gaps = 54/500 (10%)

Query: 40  PAALASLILTSTDPRTLTQTLHCP----SLHWTPQLVDQIIKRLWNHAL--KALHFFNIL 93
           P  +A+++   TDP    +  +          T      I+++L +H    +     + +
Sbjct: 7   PKHVAAVVKIQTDPLKALEMFNSAKSEDGFKHTASTYKCIVQKLGHHGEFEEMEKLLSEM 66

Query: 94  SYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGK 153
             +   A    ++  A+    R    +       RM   +  P+  +   I    V  G 
Sbjct: 67  RENVNNALLEGAYIEAMKNYGRKGKVQEAVDTFERMDFYNCDPSVHSHNAIMNILVEFGY 126

Query: 154 ADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK---------------- 197
            ++A K+++ M + G +  + ++   +   CK  +   A  L +                
Sbjct: 127 HNQAHKVYMRMRDRGVQSDVYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCT 186

Query: 198 VFRGKFKA--------------------DVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           V  G + +                    DV+++N + +  C      ++  +L +++ RG
Sbjct: 187 VVAGLYDSGEHDHARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRG 246

Query: 238 LNPNLTTYNIVLKGYFRAGQIE---------EAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           + PNL T+NI ++G  R G ++         EA  +  +M     E D +TY +I+ G+ 
Sbjct: 247 VCPNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYC 306

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G ++ A  V    V  G  P   TY ++I   CK    + A+ VF++ +GKG  P+  
Sbjct: 307 KKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIV 366

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            YN +I+GL   G +  AL+ +  M ++ C PN+ TYN++I   C  G +     L +  
Sbjct: 367 LYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDA 426

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
            +  C P++ TYN LI     + K D    A +++  M  +G  P   T+N +LNGL   
Sbjct: 427 IAKGCPPDIFTYNTLIDGYCKQLKLDS---ATEMVNRMWSQGMTPDVITYNTLLNGLCKA 483

Query: 469 GNQGLAKEILRLQSRCGRLP 488
           G      EI +     G  P
Sbjct: 484 GKSEEVMEIFKAMEEKGCTP 503



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 153/300 (51%), Gaps = 5/300 (1%)

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIAN 215
           A+++   M E+GC  ++ ++N +++ LCK   V  A +L      K    D+ +YN + +
Sbjct: 384 ALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLID 443

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
           G+C   + + A E++  M  +G+ P++ TYN +L G  +AG+ EE    F  M+++ C  
Sbjct: 444 GYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTP 503

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
           +++TY  IV       ++  A ++   M + G+ P V ++  +    CK   ++ A  +F
Sbjct: 504 NIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLF 563

Query: 336 EEMVGKGYMPNST-TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
             M  +  + ++T TYN+++        M  A++    MK+  C+P+  TY ++I  FC 
Sbjct: 564 RRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGFCK 623

Query: 395 AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
            G I +G +   +      +P+L T+  +++ + V+ K  +   A  ++  M+ +G +P 
Sbjct: 624 MGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDKVHE---AVGIIHLMLQKGIVPE 680



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 134/290 (46%), Gaps = 42/290 (14%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   +     +   +V+RM S  + P   T+  +      AGK++  ++IF +M
Sbjct: 437 TYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAM 496

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWC----- 218
            E GC  ++ ++N I+D LCK KKV +A +L    + K  K DV+S+  +  G+C     
Sbjct: 497 EEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDI 556

Query: 219 -----LVKRTNK--------------------------ALEVLKEMVDRGLNPNLTTYNI 247
                L +R  K                          A+++   M + G +P+  TY +
Sbjct: 557 DGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRV 616

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           V+ G+ + G I + ++F LE  +++    + T+  +++   V  ++  A  +   M+  G
Sbjct: 617 VIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDKVHEAVGIIHLMLQKG 676

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
           ++P   T N + +    K  V    ++ E+++ KG++    TY ++  G+
Sbjct: 677 IVPE--TVNTIFEA--DKKVVAAPKILVEDLLKKGHIA-YYTYELLYDGI 721



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 119/275 (43%), Gaps = 12/275 (4%)

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           K L  ++E V+  L      Y   +K Y R G+++EA   F  M    C+  V ++  I+
Sbjct: 61  KLLSEMRENVNNALLEG--AYIEAMKNYGRKGKVQEAVDTFERMDFYNCDPSVHSHNAIM 118

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
           +     G   +A  V+  M + GV   V TY   I+  CK      A+ +   M   G  
Sbjct: 119 NILVEFGYHNQAHKVYMRMRDRGVQSDVYTYTIRIKSFCKTARPYAALRLLRNMPELGCD 178

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
            N+  Y  V+ GL  +GE + A E    M      P+V  +N L+   C  G +     L
Sbjct: 179 SNAVAYCTVVAGLYDSGEHDHARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERL 238

Query: 405 FEK-MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE-------MVDRGFMPRKF 456
             K +  GVC PNL T+NI +  +  R+ + D  V    ++E       MV+ GF P   
Sbjct: 239 LGKVLKRGVC-PNLFTFNIFVQGL-CREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDL 296

Query: 457 TFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           T+N +++G    G    A  +L+     G  P +F
Sbjct: 297 TYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEF 331


>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
 gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
          Length = 695

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 181/342 (52%), Gaps = 3/342 (0%)

Query: 98  TYAHSPSSFDHAI--DLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKAD 155
           +Y+  P  F ++I  D   R  D RT+ +L        +     T +I+       GK  
Sbjct: 293 SYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVA 352

Query: 156 RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIA 214
           +A ++   +   G   +   +NT+++  C+ + ++ A+++F+  + +  + D I+YN + 
Sbjct: 353 KAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALI 412

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
           NG C ++   +A +++ EM   G++P++ T+N ++  Y RAGQ+E+ +    +M+ +  +
Sbjct: 413 NGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIK 472

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
            +V+++ ++V  F   G+I  A  + D M++  V+P+   YN++I    +    E A L+
Sbjct: 473 SNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLL 532

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
            E+M   G   +  TYN++++GLC   +++ A E +  + +    P+V +YN +I   C+
Sbjct: 533 VEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCN 592

Query: 395 AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
            G+ +R LEL ++M      P L TY+ L+S++    +  D+
Sbjct: 593 KGDTDRALELLQEMHKYDIRPTLRTYHPLLSALGSAGRVHDM 634



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 175/355 (49%), Gaps = 9/355 (2%)

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
           A R+ + R    L+  M S S+ P   T++I+ +     G +   + +F    + G    
Sbjct: 278 AGRMDETRA---LMDEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIG 334

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVL 230
             + + +L+ LCK+ KV KA  + +  V  G      I YN + NG+C V+    A  + 
Sbjct: 335 AYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAI-YNTLINGYCQVRDLQGAFSIF 393

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
           ++M  R + P+  TYN ++ G  +   I EA    +EM+K   +  V T+ T++  +G  
Sbjct: 394 EQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRA 453

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           G++++   V   M + G+  +V ++ ++++  CK   +  A+ + ++M+ K  +PN+  Y
Sbjct: 454 GQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVY 513

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           N +I     +G  E+A   V +MK      ++ TYN+L++  C   +I+   EL   + +
Sbjct: 514 NSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTN 573

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
               P++ +YN +IS+   +  +D  L   +LL EM      P   T++ +L+ L
Sbjct: 574 QGLRPDVVSYNTIISACCNKGDTDRAL---ELLQEMHKYDIRPTLRTYHPLLSAL 625



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 178/373 (47%), Gaps = 10/373 (2%)

Query: 103 PSSF--DHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA---IIAERYVSAGKADRA 157
           P +F  + A+       D      ++ RM      P    F+   +IA  + S GK   A
Sbjct: 156 PDTFAWNKAVQACVAAGDLDEALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRS-GKGSDA 214

Query: 158 VKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL-FKVFRGKFKADVISYNVIANG 216
           +K+F  M + G   +  ++NT++D   K   +E  + L  ++ +   K +V++YNV+ +G
Sbjct: 215 LKVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSG 274

Query: 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID 276
            C   R ++   ++ EM    + P+  TY+I+  G  R G        F E  K+   I 
Sbjct: 275 LCRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIG 334

Query: 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE 336
             T + +++G    G++ +A  V + +V+ G++P+ A YN +I   C+   ++ A  +FE
Sbjct: 335 AYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFE 394

Query: 337 EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
           +M  +   P+  TYN +I GLC    +  A + V  M+    +P+V+T+N LI  +  AG
Sbjct: 395 QMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAG 454

Query: 397 EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
           ++E+   +   M       N+ ++  ++ +     K+  +  A  +L +M+ +  +P   
Sbjct: 455 QLEKCFTVLSDMQDKGIKSNVISFGSVVKAFC---KNGKIPEAVAILDDMIHKDVVPNAQ 511

Query: 457 TFNRVLNGLLLIG 469
            +N +++  +  G
Sbjct: 512 VYNSIIDAYIESG 524



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 155/332 (46%), Gaps = 6/332 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P+  +  ++ E  +S G+       F  +   G R    ++N  +        +++A  +
Sbjct: 121 PSLSSCNLLLESLLSVGRHADVRAAFGLLVAAGARPDTFAWNKAVQACVAAGDLDEALAM 180

Query: 196 FKVF---RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
            +      G    D  SYNV+  G     + + AL+V  EMVDRG+ PN  TYN ++ G+
Sbjct: 181 LRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDGH 240

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
            + G +E  +R   +M +   + +VVTY  ++ G    G +   R + D M +  +LP  
Sbjct: 241 VKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDG 300

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            TY+ +   L +       + +F E + KG +  + T ++++ GLC  G++ +A + +  
Sbjct: 301 FTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEM 360

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           +      P    YN LI  +C   +++    +FE+M S    P+  TYN LI+ +    K
Sbjct: 361 LVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLC---K 417

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
            + +  A  L++EM   G  P   TFN +++ 
Sbjct: 418 MEMITEAEDLVMEMEKSGVDPSVETFNTLIDA 449



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 122/265 (46%), Gaps = 11/265 (4%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           ++RD +  +++  +MKS  + P   T+  +            A  + + M + G   S+ 
Sbjct: 382 QVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVE 441

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           +FNT++D   +  ++EK + +    + K  K++VIS+  +   +C   +  +A+ +L +M
Sbjct: 442 TFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDM 501

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           + + + PN   YN ++  Y  +G  E+A+    +MK       + TY  ++ G     +I
Sbjct: 502 IHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQI 561

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
             A  +   + N G+ P V +YN +I   C K   + A+ + +EM      P   TY+ +
Sbjct: 562 DEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEMHKYDIRPTLRTYHPL 621

Query: 354 IRGLCHTGEMERALEFVGRMKDDEC 378
           +           AL   GR+ D EC
Sbjct: 622 L----------SALGSAGRVHDMEC 636



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 123/268 (45%), Gaps = 7/268 (2%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           LV  M+   + P+ +TF  + + Y  AG+ ++   +   M + G + ++ SF +++   C
Sbjct: 427 LVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFC 486

Query: 185 KEKKVEKAYNLFKVFRGKFKADVIS----YNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
           K  K+ +A     +       DV+     YN I + +     T +A  ++++M   G++ 
Sbjct: 487 KNGKIPEA---VAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSA 543

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           ++ TYN++LKG  +  QI+EA      +  +    DVV+Y TI+      G+  RA  + 
Sbjct: 544 SIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELL 603

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
             M    + P++ TY+ ++  L     V +   +++ MV K   P+S+ Y          
Sbjct: 604 QEMHKYDIRPTLRTYHPLLSALGSAGRVHDMECLYQHMVHKNVEPSSSIYGTRCENESKV 663

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNIL 388
             +++ +   G   DD    N++   I+
Sbjct: 664 ASLKKEMSEKGIAFDDTERTNLELDRII 691



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 7/185 (3%)

Query: 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM---PN 346
           VG     R  F  +V  G  P    +N  +Q       ++ A+ +   M G+      P+
Sbjct: 136 VGRHADVRAAFGLLVAAGARPDTFAWNKAVQACVAAGDLDEALAMLRRM-GRSEGAPPPD 194

Query: 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
           + +YNVVI GL  +G+   AL+    M D    PN  TYN +I      G++E G  L +
Sbjct: 195 AFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRD 254

Query: 407 KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
           +M      PN+ TYN+L+S +    + D+      L+ EM     +P  FT++ + +GL 
Sbjct: 255 QMLQDGRKPNVVTYNVLLSGLCRAGRMDETRA---LMDEMTSYSMLPDGFTYSILFDGLT 311

Query: 467 LIGNQ 471
             G+ 
Sbjct: 312 RTGDS 316



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 8/196 (4%)

Query: 301 DGMVNGGV---LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
           DG   G V   LPS+++ N +++ L       +    F  +V  G  P++  +N  ++  
Sbjct: 109 DGACAGSVRSPLPSLSSCNLLLESLLSVGRHADVRAAFGLLVAAGARPDTFAWNKAVQAC 168

Query: 358 CHTGEMERALEFVGRMKDDECEP--NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
              G+++ AL  + RM   E  P  +  +YN++I     +G+    L++F++M      P
Sbjct: 169 VAAGDLDEALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAP 228

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
           N  TYN +I       K  DL    +L  +M+  G  P   T+N +L+GL   G     +
Sbjct: 229 NQITYNTMIDGHV---KGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETR 285

Query: 476 EILRLQSRCGRLPRQF 491
            ++   +    LP  F
Sbjct: 286 ALMDEMTSYSMLPDGF 301


>gi|413924892|gb|AFW64824.1| hypothetical protein ZEAMMB73_716034 [Zea mays]
          Length = 721

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 113/371 (30%), Positives = 176/371 (47%), Gaps = 5/371 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  I   AR         LV  M+ LS   +  T+  +    +  G   +A  + + M
Sbjct: 276 TFNVVISFLAREGHLENAVKLVDSMR-LSKKASSFTYNPLITALLERGFVRKAEALQMEM 334

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRT 223
              G   ++ ++N I+  L K ++ E A   F   R      DVI+YN + N +C     
Sbjct: 335 ENEGIMPTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNL 394

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +AL +L ++   GL P + TYN ++ GY R G + EA R   EM ++ C  DV TYT +
Sbjct: 395 KEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTIL 454

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++G   V  +  AR  FD M++ G+ P    YN  I       S   A  + E M+ KG 
Sbjct: 455 MNGSRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRICAELTLSSTPMAFQLREVMMLKGI 514

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P++ TYNV+I GLC TG ++ A     +M  D  +P+  TY  LI   C+ G +    +
Sbjct: 515 YPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREARK 574

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           L   M S    P++ TY IL+ +   R    +L  A     +M+D G  P + T+N +++
Sbjct: 575 LLNGMVSDGLQPSVVTYTILVHTCCRR---GNLYSAYGWFRKMLDVGIEPNEITYNVLIH 631

Query: 464 GLLLIGNQGLA 474
            L + G   LA
Sbjct: 632 ALCMTGRTPLA 642



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 144/303 (47%), Gaps = 2/303 (0%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
           +W L+  ++   L PT  T+  + + Y   G    A ++   M E GC   + ++  +++
Sbjct: 398 LW-LLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTILMN 456

Query: 182 LLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
              K + +  A   F     K  + D  +YN        +  T  A ++ + M+ +G+ P
Sbjct: 457 GSRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRICAELTLSSTPMAFQLREVMMLKGIYP 516

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           +  TYN+++ G  + G +++A R   +M     + D +TYT ++H     G ++ AR + 
Sbjct: 517 DTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREARKLL 576

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           +GMV+ G+ PSV TY  ++   C++ ++ +A   F +M+  G  PN  TYNV+I  LC T
Sbjct: 577 NGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCMT 636

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
           G    A      M +    PN  TY +LI   C  G     + L+ +M      P+  T+
Sbjct: 637 GRTPLAFRHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTH 696

Query: 421 NIL 423
           N L
Sbjct: 697 NAL 699



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 146/339 (43%), Gaps = 6/339 (1%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M+++ L P   T+  +  RY  AG    A+ +   +   G   ++ ++NT++D  C+   
Sbjct: 369 MRAMGLLPDVITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGD 428

Query: 189 VEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
           + +A  L +  V +G F  DV +Y ++ NG   V+    A E   EM+ +GL P+   YN
Sbjct: 429 LAEARRLKEEMVEQGCFP-DVCTYTILMNGSRKVRNLAMAREFFDEMLSKGLQPDCFAYN 487

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
             +           A++    M  +    D VTY  I+ G    G +K A+ +   MV+ 
Sbjct: 488 TRICAELTLSSTPMAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSD 547

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G+ P   TY  +I   C++  +  A  +   MV  G  P+  TY +++   C  G +  A
Sbjct: 548 GLQPDCITYTCLIHAHCERGLLREARKLLNGMVSDGLQPSVVTYTILVHTCCRRGNLYSA 607

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
             +  +M D   EPN  TYN+LI   C  G        F +M      PN  TY +LI  
Sbjct: 608 YGWFRKMLDVGIEPNEITYNVLIHALCMTGRTPLAFRHFHEMLERGLAPNKYTYTLLIDG 667

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
                   D   A +L  EM   G  P   T N +  G 
Sbjct: 668 NCREGNWAD---AIRLYFEMHQNGIPPDYCTHNALFKGF 703



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 159/349 (45%), Gaps = 42/349 (12%)

Query: 167 HGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNK 225
           HG    +   N +L +L    + +    ++ ++ + + +  +++YN + + +    R ++
Sbjct: 196 HGVAPDVRDCNRVLRVLRDAARWDDVRAVYGEMLQLRVEPTIVTYNTLLDSFLKEGRKDE 255

Query: 226 ALEVLKEMVDRG--LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           A  +LKEM  +G   + N  T+N+V+    R G +E A +    M+  K +    TY  +
Sbjct: 256 ASMLLKEMETQGGGFSLNDVTFNVVISFLAREGHLENAVKLVDSMRLSK-KASSFTYNPL 314

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +      G +++A  +   M N G++P+V TYNA+I  L K +  E A + F EM   G 
Sbjct: 315 ITALLERGFVRKAEALQMEMENEGIMPTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMGL 374

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
           +P+  TYN ++   C  G ++ AL  +G ++     P V TYN LI  +C  G++     
Sbjct: 375 LPDVITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARR 434

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF------- 456
           L E+M    C P++ TY IL++     +K  +L +A +   EM+ +G  P  F       
Sbjct: 435 LKEEMVEQGCFPDVCTYTILMNG---SRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRIC 491

Query: 457 ----------------------------TFNRVLNGLLLIGNQGLAKEI 477
                                       T+N +++GL   GN   AK +
Sbjct: 492 AELTLSSTPMAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKRL 540



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 126/308 (40%), Gaps = 2/308 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   RL D      L   M      P   T+ I+            A + F  M
Sbjct: 415 TYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTILMNGSRKVRNLAMAREFFDEM 474

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
              G +    ++NT +           A+ L +V   K    D ++YNVI +G C     
Sbjct: 475 LSKGLQPDCFAYNTRICAELTLSSTPMAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNL 534

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
             A  +  +MV  GL P+  TY  ++  +   G + EA +    M     +  VVTYT +
Sbjct: 535 KDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREARKLLNGMVSDGLQPSVVTYTIL 594

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           VH     G +  A   F  M++ G+ P+  TYN +I  LC       A   F EM+ +G 
Sbjct: 595 VHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCMTGRTPLAFRHFHEMLERGL 654

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN  TY ++I G C  G    A+     M  +   P+  T+N L + F D G +   +E
Sbjct: 655 APNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNALFKGF-DEGHMYHAIE 713

Query: 404 LFEKMGSG 411
             E +  G
Sbjct: 714 YMENIVLG 721



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 90/194 (46%), Gaps = 6/194 (3%)

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM--VGKGYMPNSTTYNVVI 354
           R V+  M+   V P++ TYN ++    K+   + A ++ +EM   G G+  N  T+NVVI
Sbjct: 222 RAVYGEMLQLRVEPTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGFSLNDVTFNVVI 281

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
             L   G +E A++ V  M+  + + +  TYN LI    + G + +   L  +M +   +
Sbjct: 282 SFLAREGHLENAVKLVDSMRLSK-KASSFTYNPLITALLERGFVRKAEALQMEMENEGIM 340

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           P + TYN +I  +    K +    A     EM   G +P   T+N +LN     GN   A
Sbjct: 341 PTVVTYNAIIHGLL---KCEQAEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEA 397

Query: 475 KEILRLQSRCGRLP 488
             +L    R G  P
Sbjct: 398 LWLLGDLRRAGLAP 411


>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
          Length = 692

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 172/383 (44%), Gaps = 42/383 (10%)

Query: 85  KALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           +ALH    L   P++   P   S++  +      + +  V  L+  M  ++  P   TF 
Sbjct: 247 EALHLLRDL---PSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFN 303

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK 202
            +       G  +R  ++   M EHGC   +  + TI+D +CKE  +E A+         
Sbjct: 304 TLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAH--------- 354

Query: 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262
                                    E+L  M   GL PN+  YN +LKG   A + EE  
Sbjct: 355 -------------------------EILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETE 389

Query: 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322
               EM  + C +D VT+  +V  F   G + R   + + M+  G +P V TY  +I   
Sbjct: 390 ELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGF 449

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
           CK+  ++ A+++ + M   G  PN+ +Y +V++GLC       A + + +M    C  N 
Sbjct: 450 CKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNP 509

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
            T+N LI + C  G +E+ +EL ++M    C P+L +Y+ +I  +    K+D+ L   +L
Sbjct: 510 ITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEAL---EL 566

Query: 443 LIEMVDRGFMPRKFTFNRVLNGL 465
           L  MV++G  P    ++ + + L
Sbjct: 567 LNVMVNKGMSPNTIIYSSIASAL 589



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 130/279 (46%), Gaps = 3/279 (1%)

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           Y+VI    C       A+ VL+++  RG   ++   N+VL      G ++EA     ++ 
Sbjct: 197 YHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLP 256

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
              CE DVV+Y  ++ G  +       + + + MV     P++ T+N +I  LC+    E
Sbjct: 257 SFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFE 316

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
               V  +MV  G  P+   Y  +I G+C  G +E A E + RM     +PNV  YN L+
Sbjct: 317 RVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLL 376

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
           +  C A   E   EL  +M    C  +  T+NIL+   F +    D ++  +LL +M++ 
Sbjct: 377 KGLCSAERWEETEELLAEMFDKDCPLDDVTFNILV-DFFCQNGLVDRVI--ELLEQMLEH 433

Query: 450 GFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           G MP   T+  V+NG    G    A  +L+  + CG  P
Sbjct: 434 GCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKP 472



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 110/256 (42%), Gaps = 6/256 (2%)

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           YN +  G+C   +   A  +   +    + PN  TY  V++     G+I +A     EM 
Sbjct: 130 YNAMVAGYCRAGQLESARRLAAAV---PVPPNAYTYFPVVRALCARGRIADALAVLDEMP 186

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
           +R C      Y  I+      G  + A  V + +   G    V   N ++  +C + SV+
Sbjct: 187 RRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVD 246

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
            A+ +  ++   G  P+  +YN V++GLC         E +  M    C PN+ T+N LI
Sbjct: 247 EALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLI 306

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
            Y C  G  ER  E+  +M    C P++  Y  +I  +    K   L VA ++L  M   
Sbjct: 307 SYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGIC---KEGHLEVAHEILNRMPSY 363

Query: 450 GFMPRKFTFNRVLNGL 465
           G  P    +N +L GL
Sbjct: 364 GLKPNVVCYNTLLKGL 379



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 96/221 (43%), Gaps = 36/221 (16%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M +    P   ++ I+ +   SA +   A  +   M + GC  +  +FNT+++ LC
Sbjct: 461 LLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLC 520

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL- 242
           K+  VE+A  L K +       D+ISY+ + +G     +T++ALE+L  MV++G++PN  
Sbjct: 521 KKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTI 580

Query: 243 ---------------------------TT-------YNIVLKGYFRAGQIEEAWRFFLEM 268
                                      TT       YN V+    + G+ E A  F   M
Sbjct: 581 IYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYM 640

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
               C  +  TYT ++ G    G +K A+ +   + + G L
Sbjct: 641 VSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKGAL 681


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 181/341 (53%), Gaps = 6/341 (1%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M+S  + P    F+ +   +  +G  D+A+  F S+ E G       +  ++   C++  
Sbjct: 356 MRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGM 415

Query: 189 VEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           + +A NL  ++ +     DV++YN I +G C  K   +A ++  EM +RGL P+  T  I
Sbjct: 416 ISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTI 475

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ G+ + G ++ A   F +MK+++ ++DVVTY T++ GFG VG+I  A+ ++  MV+  
Sbjct: 476 LIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKE 535

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           +LP+  +++ ++  LC K  +  A  V++EM+ K   P     N +I+G C +G      
Sbjct: 536 ILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGE 595

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM--GSGVCLPNLDTYNILIS 425
            F+ +M  +   P+  +YN LI  F     + +   L +KM    G  +P++ TYN ++ 
Sbjct: 596 IFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILH 655

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
             F R+  + +  A  +L +M++RG  P + T+  ++NG +
Sbjct: 656 G-FCRE--NQMKEAEAVLRKMIERGVNPDRSTYTSLINGFV 693



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 105/434 (24%), Positives = 197/434 (45%), Gaps = 22/434 (5%)

Query: 65  LHWTPQLVDQIIKRLWNHALKALHFFNILSYH-PTYAH---SPSSFDHAIDLAARLRDYR 120
           +   P  V +++ R  N       F + L ++ P + H   S S+  H +  + RL D +
Sbjct: 64  IRLNPLAVVEVLYRCRNDLSLGQRFVDQLGFNFPNFKHTSLSLSAMIHILVRSGRLSDAQ 123

Query: 121 TVWTLVHRMKSLS--------------LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE 166
           +    + R   +S               G     F ++   +V A K   A + F  +  
Sbjct: 124 SCVLRMIRRSGVSRVEIVNSLVSTYSNCGSNDSVFDLLIRTFVQARKLREAYEAFTLLRS 183

Query: 167 HGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNK 225
            G   S+++ N ++  L +   VE A+ +++ + R     +V + N++ N  C   +  K
Sbjct: 184 KGYTVSIDACNALIGSLVRIGWVELAWRIYQEISRSGVGVNVYTLNIMVNALCKDGKMEK 243

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
               L E+ ++G+ P++ TYN ++  Y   G +EEA+     M  +     V TY T+++
Sbjct: 244 VGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVIN 303

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
           G    G+ +RA+ VF  M+  G+ P   TY +++   CKK        +F +M  +  +P
Sbjct: 304 GLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVP 363

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           +   ++ ++     +G +++AL +   +K+    P+   Y ILI+ +C  G I   + L 
Sbjct: 364 DLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLR 423

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            +M    C  ++ TYN ++  +  RK    L  A KL  EM +RG  P  +T   +++G 
Sbjct: 424 NEMLQQGCAMDVVTYNTILHGLCKRKM---LGEADKLFNEMTERGLFPDSYTLTILIDGH 480

Query: 466 LLIGNQGLAKEILR 479
             +GN   A E+ +
Sbjct: 481 CKLGNLQNAMELFK 494



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 158/344 (45%), Gaps = 4/344 (1%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           W +   +    +G    T  I+       GK ++       + E G    + ++NT++  
Sbjct: 210 WRIYQEISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISA 269

Query: 183 LCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
              +  +E+A+ L      K F   V +YN + NG C   +  +A EV  EM+  GL+P+
Sbjct: 270 YSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPD 329

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
            TTY  +L    + G   E    F +M+ R    D+V +++++  F   G + +A   F+
Sbjct: 330 STTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFN 389

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            +   G++P    Y  +IQ  C+K  +  A+ +  EM+ +G   +  TYN ++ GLC   
Sbjct: 390 SVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRK 449

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
            +  A +    M +    P+  T  ILI   C  G ++  +ELF+KM       ++ TYN
Sbjct: 450 MLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYN 509

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            L+       K  D+  A ++  +MV +  +P   +F+ ++N L
Sbjct: 510 TLLDGF---GKVGDIDTAKEIWADMVSKEILPTPISFSILVNAL 550



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 174/395 (44%), Gaps = 41/395 (10%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           + L+H M S    P   T+  +       GK +RA ++F  M   G      ++ ++L  
Sbjct: 280 FELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLME 339

Query: 183 LCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
            CK+    +  N+F   R +    D++ ++ + + +      +KAL     + + GL P+
Sbjct: 340 ACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPD 399

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
              Y I+++GY R G I EA     EM ++ C +DVVTY TI+HG      +  A  +F+
Sbjct: 400 NVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFN 459

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE------------------------- 336
            M   G+ P   T   +I   CK  +++NA+ +F+                         
Sbjct: 460 EMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVG 519

Query: 337 ----------EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
                     +MV K  +P   ++++++  LC  G +  A      M     +P V   N
Sbjct: 520 DIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICN 579

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            +I+ +C +G    G    EKM S   +P+  +YN LI   FV  K +++  A  L+ +M
Sbjct: 580 SMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYG-FV--KEENMSKAFGLVKKM 636

Query: 447 VDR--GFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
            ++  G +P  FT+N +L+G         A+ +LR
Sbjct: 637 EEKQGGLVPDVFTYNSILHGFCRENQMKEAEAVLR 671



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 118/252 (46%), Gaps = 3/252 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L + M    L P   T  I+ + +   G    A+++F  M E   +  + ++NT+LD   
Sbjct: 457 LFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFG 516

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K   ++ A  ++     K      IS++++ N  C     ++A  V  EM+ + + P + 
Sbjct: 517 KVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVM 576

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
             N ++KGY R+G   +   F  +M       D ++Y T+++GF     + +A  +   M
Sbjct: 577 ICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKM 636

Query: 304 V--NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
               GG++P V TYN+++   C+++ ++ A  V  +M+ +G  P+ +TY  +I G     
Sbjct: 637 EEKQGGLVPDVFTYNSILHGFCRENQMKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQD 696

Query: 362 EMERALEFVGRM 373
            +  A  F   M
Sbjct: 697 NLTEAFRFHDEM 708



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 122/273 (44%), Gaps = 6/273 (2%)

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           ++++   +   ++  +A E    +  +G   ++   N ++    R G +E AWR + E+ 
Sbjct: 158 FDLLIRTFVQARKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEIS 217

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
           +    ++V T   +V+     G++++       +   GV P + TYN +I     +  +E
Sbjct: 218 RSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLME 277

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
            A  +   M  KG+ P   TYN VI GLC  G+ ERA E    M      P+  TY  L+
Sbjct: 278 EAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLL 337

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
              C  G+      +F  M S   +P+L  ++ ++ S+F R  S +L  A      + + 
Sbjct: 338 MEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMM-SLFTR--SGNLDKALMYFNSVKEA 394

Query: 450 GFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           G +P    +  ++ G      +G+  E + L++
Sbjct: 395 GLIPDNVIYTILIQGYC---RKGMISEAMNLRN 424



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 117/240 (48%), Gaps = 3/240 (1%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID   +L + +    L  +MK   +     T+  + + +   G  D A +I+  M     
Sbjct: 477 IDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEI 536

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
             +  SF+ +++ LC +  + +A+ ++ ++     K  V+  N +  G+C     +    
Sbjct: 537 LPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEI 596

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI--DVVTYTTIVHG 286
            L++M+  G  P+  +YN ++ G+ +   + +A+    +M++++  +  DV TY +I+HG
Sbjct: 597 FLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHG 656

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
           F    ++K A  V   M+  GV P  +TY ++I     +D++  A    +EM+ +G+ P+
Sbjct: 657 FCRENQMKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQDNLTEAFRFHDEMLQRGFSPD 716



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 11/177 (6%)

Query: 102 SPSSFD---HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           +P SF    +A+     L +   VW     M S S+ PT      + + Y  +G A    
Sbjct: 539 TPISFSILVNALCSKGHLSEAFRVW---DEMISKSIKPTVMICNSMIKGYCRSGNASDG- 594

Query: 159 KIFLS-MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF---RGKFKADVISYNVIA 214
           +IFL  M   G      S+NT++    KE+ + KA+ L K     +G    DV +YN I 
Sbjct: 595 EIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSIL 654

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
           +G+C   +  +A  VL++M++RG+NP+ +TY  ++ G+     + EA+RF  EM +R
Sbjct: 655 HGFCRENQMKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQDNLTEAFRFHDEMLQR 711



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 98/209 (46%), Gaps = 3/209 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  +D   ++ D  T   +   M S  + PT  +F+I+     S G    A +++  M
Sbjct: 507 TYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEM 566

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKA-YNLFKVFRGKFKADVISYNVIANGWCLVKRT 223
                + ++   N+++   C+          L K+    F  D ISYN +  G+   +  
Sbjct: 567 ISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENM 626

Query: 224 NKALEVLKEMVDR--GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
           +KA  ++K+M ++  GL P++ TYN +L G+ R  Q++EA     +M +R    D  TYT
Sbjct: 627 SKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQMKEAEAVLRKMIERGVNPDRSTYT 686

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
           ++++GF     +  A    D M+  G  P
Sbjct: 687 SLINGFVSQDNLTEAFRFHDEMLQRGFSP 715


>gi|356549285|ref|XP_003543024.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Glycine max]
          Length = 479

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 120/448 (26%), Positives = 204/448 (45%), Gaps = 52/448 (11%)

Query: 67  WTPQLVDQIIKRLWN---HALKALHFFN--ILSYHPTYAHSPSSFDHAIDLAARLRDYRT 121
           W  Q+ + ++ +L        KA++ F+     Y   + H   +F   I     +  +R 
Sbjct: 9   WPKQITNSLVVQLIKAEKDVHKAVNMFDSATAEYGNGFRHDHETFGLIISRLVTVNQFRP 68

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
              ++ RMK      T+  F  I   Y    +   A+++F  M     R +  ++ TILD
Sbjct: 69  AEGMLERMKQEKCMVTEDIFLSICRGYGRVHRPLDAIRVFHKMEGFQLRPTQKAYLTILD 128

Query: 182 LLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRT-NKALEVLKEMVDRGLN 239
           +L +E  V++A   ++  R     + V+S N++    C  K T + AL + +EM +RG  
Sbjct: 129 ILVEENHVKRAIGFYREMRELGIPSSVVSLNILIKALCKNKETVDSALRIFQEMPNRGCQ 188

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF----------GV 289
           P+  TY  ++ G  R G I EA   F EM+++     VVTYT+++HG           G+
Sbjct: 189 PDSYTYGTLINGLCRLGNISEAKELFKEMEQKGFSASVVTYTSLIHGLCQSNNLDEAIGL 248

Query: 290 VGEIKRAR---NVF------DGMVNGGV----------------LPSVATYNAMIQVLCK 324
           + E+KR     NVF      DG+  GG                 LP++ TY+ +I  LCK
Sbjct: 249 LEEMKRNDIEPNVFTYSSLMDGLCKGGHSSQAMQLLEVMDKKHHLPNMVTYSTLINGLCK 308

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN--- 381
           +  +  A+ + + M  +G  PN+  Y  +I GLC  G  + A  F+  M      PN   
Sbjct: 309 ERKLREAVEILDRMRIQGLKPNAGLYGKIISGLCAAGSYQEAANFIDEMVLGGISPNRAS 368

Query: 382 ----VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
               V+ +N++++  C+  +  R  +L+  M +      +DT++ L+       K  DL 
Sbjct: 369 WSLHVRMHNMVVQGLCNNVDPPRAFQLYLSMRTRCISVEIDTFDCLVKCFC---KRGDLH 425

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            A ++L EMV  G +P +  +N V+ GL
Sbjct: 426 KAARILEEMVLDGCIPDEGVWNVVIGGL 453



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 115/253 (45%), Gaps = 4/253 (1%)

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           G   +  T+ +++       Q   A      MK+ KC +    + +I  G+G V     A
Sbjct: 45  GFRHDHETFGLIISRLVTVNQFRPAEGMLERMKQEKCMVTEDIFLSICRGYGRVHRPLDA 104

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
             VF  M    + P+   Y  ++ +L +++ V+ AI  + EM   G   +  + N++I+ 
Sbjct: 105 IRVFHKMEGFQLRPTQKAYLTILDILVEENHVKRAIGFYREMRELGIPSSVVSLNILIKA 164

Query: 357 LCHTGE-MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
           LC   E ++ AL     M +  C+P+  TY  LI   C  G I    ELF++M       
Sbjct: 165 LCKNKETVDSALRIFQEMPNRGCQPDSYTYGTLINGLCRLGNISEAKELFKEMEQKGFSA 224

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
           ++ TY  LI  +    +S++L  A  LL EM      P  FT++ +++GL   G+   A 
Sbjct: 225 SVVTYTSLIHGLC---QSNNLDEAIGLLEEMKRNDIEPNVFTYSSLMDGLCKGGHSSQAM 281

Query: 476 EILRLQSRCGRLP 488
           ++L +  +   LP
Sbjct: 282 QLLEVMDKKHHLP 294



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 89/211 (42%), Gaps = 5/211 (2%)

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMV---NGGVLPSVATYNAMIQVLCKKDSVENAILV 334
           +T + +V       ++ +A N+FD        G      T+  +I  L   +    A  +
Sbjct: 13  ITNSLVVQLIKAEKDVHKAVNMFDSATAEYGNGFRHDHETFGLIISRLVTVNQFRPAEGM 72

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
            E M  +  M     +  + RG         A+    +M+  +  P  + Y  ++    +
Sbjct: 73  LERMKQEKCMVTEDIFLSICRGYGRVHRPLDAIRVFHKMEGFQLRPTQKAYLTILDILVE 132

Query: 395 AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
              ++R +  + +M       ++ + NILI ++   K++ D   A ++  EM +RG  P 
Sbjct: 133 ENHVKRAIGFYREMRELGIPSSVVSLNILIKALCKNKETVD--SALRIFQEMPNRGCQPD 190

Query: 455 KFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
            +T+  ++NGL  +GN   AKE+ +   + G
Sbjct: 191 SYTYGTLINGLCRLGNISEAKELFKEMEQKG 221


>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
 gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 465

 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 199/402 (49%), Gaps = 9/402 (2%)

Query: 81  NHALKALHFFN-ILSYHPTYAHSPS-SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQ 138
           N    A+  FN +L  +PT    P+  F+  +    + + Y TV  L  +M+   + P  
Sbjct: 66  NDVDDAVSLFNCLLRQNPT---PPAIEFNKILGSLVKSKHYHTVLYLSKKMEFRGIKPNL 122

Query: 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-K 197
               I+   +   G    A  +F  + + G   +  +F T++  LC + ++ +A N   K
Sbjct: 123 VNCNILINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLCLKGQIHQALNFHDK 182

Query: 198 VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
           +    F+ + ISY  + +G C V  T  AL++L+ +  + + PN+  Y+ ++ G  +   
Sbjct: 183 LVALGFQFNQISYGTLIDGLCKVGETRAALDLLRRVDGKLVQPNVVMYSTIIDGMCKDKH 242

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           + +A+  + EM  +    +VVTY+ ++ GF  VG++K A ++F+ M++  + P V T+N 
Sbjct: 243 VNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPDVYTFNI 302

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           ++ V CK   +  A+ + +EM  +G  PN  TY+ ++  LC T  +++A+  + ++KD  
Sbjct: 303 LVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAVALLTKLKDQG 362

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
             PN+ TY ILI   C +G++E    +FE +        + TY ++      +   D+  
Sbjct: 363 IRPNMHTYTILIDGLCTSGKLEDARNIFEDLLVKGYDITVVTYIVMFYGFCKKGLFDE-- 420

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
            A  LL +M + G +P   T+  +   L   G   +A+++ R
Sbjct: 421 -ASALLSKMEENGCIPDAKTYELIKLSLFKKGENDMAEKLHR 461



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 128/286 (44%), Gaps = 3/286 (1%)

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
           K ++I Y+  +  +      + A+ +   ++ +   P    +N +L    ++        
Sbjct: 49  KINLIPYSSTSTTFHSNNDVDDAVSLFNCLLRQNPTPPAIEFNKILGSLVKSKHYHTVLY 108

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
              +M+ R  + ++V    +++ F  +G I  A +VF  ++  G  P+  T+  +I+ LC
Sbjct: 109 LSKKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLC 168

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
            K  +  A+   +++V  G+  N  +Y  +I GLC  GE   AL+ + R+     +PNV 
Sbjct: 169 LKGQIHQALNFHDKLVALGFQFNQISYGTLIDGLCKVGETRAALDLLRRVDGKLVQPNVV 228

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
            Y+ +I   C    +    +L+ +M S    PN+ TY+ LIS  F   K  D   A  L 
Sbjct: 229 MYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKD---AVDLF 285

Query: 444 IEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPR 489
            +M+     P  +TFN +++     G    A +++      G+ P 
Sbjct: 286 NKMISENIKPDVYTFNILVDVFCKSGKISYALKLVDEMHDRGQPPN 331



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 82/172 (47%), Gaps = 6/172 (3%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  +D+  +         LV  M      P   T++ I +      + D+AV +   +
Sbjct: 299 TFNILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAVALLTKL 358

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
            + G R +++++  ++D LC   K+E A N+F+    K +   V++Y V+  G+C     
Sbjct: 359 KDQGIRPNMHTYTILIDGLCTSGKLEDARNIFEDLLVKGYDITVVTYIVMFYGFCKKGLF 418

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
           ++A  +L +M + G  P+  TY ++    F+ G+ + A +       R+CEI
Sbjct: 419 DEASALLSKMEENGCIPDAKTYELIKLSLFKKGENDMAEKL-----HRECEI 465


>gi|147828617|emb|CAN73046.1| hypothetical protein VITISV_008668 [Vitis vinifera]
          Length = 477

 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 114/414 (27%), Positives = 191/414 (46%), Gaps = 20/414 (4%)

Query: 65  LHWTPQL----VDQIIKRLWNHALKALHFFN--ILSYHPTYAHSPSSFDHAIDLAARLRD 118
           + W+ Q+    V Q+IK   +   KA+  F+     Y   + HS  +F   I        
Sbjct: 7   IKWSKQIGSAQVAQLIKAERD-IQKAIVIFDSATAEYTNGFRHSHQTFSLMISRLVSANH 65

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           +R    L+ RMK      T+  F  I   Y    K   AV++F  M E+ C  S  S+ T
Sbjct: 66  FRLAEELLCRMKEEKCNITEDIFLSICRAYGRVHKPLDAVRVFRKMKEYECEPSQKSYIT 125

Query: 179 ILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRT-NKALEVLKEMVDR 236
           +  +L  E +++ A   ++  R       V S NV+    C    T + AL + +EM +R
Sbjct: 126 VFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNR 185

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           G  P+  TY  ++ G  R G+I EA   F EM+ + C   VVTY +++HG     ++  A
Sbjct: 186 GCPPHSYTYGTLIXGLCRLGKIGEAKELFKEMETKACSPTVVTYXSLIHGLCQSKDLDSA 245

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
             + + M + G+ P+V TY++++   CK      A+ + + MV + ++PN  TY+ ++ G
Sbjct: 246 IRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHG 305

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
           LC  G+++ A+E + RMK     P+   Y  +I  FCD  +        ++M  G   PN
Sbjct: 306 LCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGISPN 365

Query: 417 LDTY-------NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
             T+       NI++  +     +     A +L + M  RG      TF+ ++N
Sbjct: 366 RLTWSLHVRIHNIVVQGLCTEHPNR----AFQLYLSMRTRGISIDAKTFDSLVN 415



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 158/313 (50%), Gaps = 10/313 (3%)

Query: 129 MKSLSLGPTQKTFAIIAERYV-SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           M+ + + P+  +  ++ +    ++G  D A++IF  M   GC     ++ T++  LC+  
Sbjct: 146 MREMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPHSYTYGTLIXGLCRLG 205

Query: 188 KVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
           K+ +A  LFK    K     V++Y  + +G C  K  + A+ +L+EM  +G+ PN+ TY+
Sbjct: 206 KIGEAKELFKEMETKACSPTVVTYXSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYS 265

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
            ++ G+ ++G    A      M  R+   +++TY+T+VHG    G+++ A  + D M   
Sbjct: 266 SLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQ 325

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY-------NVVIRGLCH 359
           G+ P    Y  +I   C       A    +EMV  G  PN  T+       N+V++GLC 
Sbjct: 326 GLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGISPNRLTWSLHVRIHNIVVQGLC- 384

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419
           T    RA +    M+      + +T++ L+ YFC+ G++ +   L ++M    C+P+  T
Sbjct: 385 TEHPNRAFQLYLSMRTRGISIDAKTFDSLVNYFCNKGDLHKAAHLVDEMVLDGCIPDEXT 444

Query: 420 YNILISSMFVRKK 432
           +N ++ + + R+K
Sbjct: 445 WNAVVCAFWDRRK 457



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 144/305 (47%), Gaps = 8/305 (2%)

Query: 179 ILDLLCKEKKVEKAYNLFKV----FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           +  L+  E+ ++KA  +F      +   F+    +++++ +          A E+L  M 
Sbjct: 18  VAQLIKAERDIQKAIVIFDSATAEYTNGFRHSHQTFSLMISRLVSANHFRLAEELLCRMK 77

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
           +   N     +  + + Y R  +  +A R F +MK+ +CE    +Y T+        ++K
Sbjct: 78  EEKCNITEDIFLSICRAYGRVHKPLDAVRVFRKMKEYECEPSQKSYITVFAILVGENQLK 137

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL-VFEEMVGKGYMPNSTTYNVV 353
            A   +  M   G+ PSVA+ N +I+ LCK     +A L +F EM  +G  P+S TY  +
Sbjct: 138 LALRFYRYMREMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPHSYTYGTL 197

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           I GLC  G++  A E    M+   C P V TY  LI   C + +++  + L E+M S   
Sbjct: 198 IXGLCRLGKIGEAKELFKEMETKACSPTVVTYXSLIHGLCQSKDLDSAIRLLEEMASKGI 257

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGL 473
            PN+ TY+ L+       KS     A +LL  MV R  +P   T++ +++GL   G    
Sbjct: 258 KPNVFTYSSLMDG---HCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQE 314

Query: 474 AKEIL 478
           A EIL
Sbjct: 315 AVEIL 319



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 117/253 (46%), Gaps = 4/253 (1%)

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           G   +  T+++++     A     A      MK+ KC I    + +I   +G V +   A
Sbjct: 45  GFRHSHQTFSLMISRLVSANHFRLAEELLCRMKEEKCNITEDIFLSICRAYGRVHKPLDA 104

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
             VF  M      PS  +Y  +  +L  ++ ++ A+  +  M   G  P+  + NV+I+ 
Sbjct: 105 VRVFRKMKEYECEPSQKSYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIKA 164

Query: 357 LC-HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
           LC ++G M+ AL     M +  C P+  TY  LI   C  G+I    ELF++M +  C P
Sbjct: 165 LCKNSGTMDAALRIFREMPNRGCPPHSYTYGTLIXGLCRLGKIGEAKELFKEMETKACSP 224

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
            + TY  LI  +    +S DL  A +LL EM  +G  P  FT++ +++G    G    A 
Sbjct: 225 TVVTYXSLIHGLC---QSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRAL 281

Query: 476 EILRLQSRCGRLP 488
           E+L +      LP
Sbjct: 282 ELLDMMVSRRHLP 294



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 88/195 (45%), Gaps = 13/195 (6%)

Query: 292 EIKRARNVFDGMV---NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
           +I++A  +FD        G   S  T++ MI  L       N   + EE++ +       
Sbjct: 27  DIQKAIVIFDSATAEYTNGFRHSHQTFSLMISRLVSA----NHFRLAEELLCRMKEEKCN 82

Query: 349 TYNVVIRGLCHT-GEMERALEFVG---RMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
               +   +C   G + + L+ V    +MK+ ECEP+ ++Y  +        +++  L  
Sbjct: 83  ITEDIFLSICRAYGRVHKPLDAVRVFRKMKEYECEPSQKSYITVFAILVGENQLKLALRF 142

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           +  M      P++ + N+LI ++   K S  +  A ++  EM +RG  P  +T+  ++ G
Sbjct: 143 YRYMREMGIPPSVASLNVLIKALC--KNSGTMDAALRIFREMPNRGCPPHSYTYGTLIXG 200

Query: 465 LLLIGNQGLAKEILR 479
           L  +G  G AKE+ +
Sbjct: 201 LCRLGKIGEAKELFK 215


>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 804

 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 110/399 (27%), Positives = 179/399 (44%), Gaps = 52/399 (13%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           ++F   ID   +    +    +   M    + P + T+ II      A KAD A ++F++
Sbjct: 197 ATFSILIDGMCKSGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQAQKADVAYRLFIA 256

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR----------------GKFKA-- 205
           M +HGC     ++N +L   CK  +V++A  L K F                 G F+A  
Sbjct: 257 MKDHGCIPDSVTYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCLIDGLFRARR 316

Query: 206 ------------------DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
                             DVI Y ++  G     +   AL +L EM +RGL P+   YN 
Sbjct: 317 FEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCYNA 376

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++KGY   G ++EA    LE+ K  C     TYT ++ G    G +  A+ +F+ M   G
Sbjct: 377 LIKGYCDLGLLDEAKSLHLEISKNDCFSSACTYTILICGMCRSGLVGDAQQIFNEMEKHG 436

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEM-------------VGKGYMPNSTTYNVVI 354
             PSV T+NA+I   CK  ++E A L+F +M              G   + ++ +   ++
Sbjct: 437 CYPSVVTFNALIDGFCKAGNIEKAQLLFYKMEIGRNPSLFLRLSQGANRVLDTASLQTMV 496

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
             LC +G + +A   + ++ D    PN+ TYNILI  FC AG I    +LF+++      
Sbjct: 497 EQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIHGFCKAGNINGAFKLFKELQLKGLS 556

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
           P+  TY  LI+ +    + +D   A  +L +++  G  P
Sbjct: 557 PDSVTYGTLINGLLSANREED---AFTVLDQILKNGCTP 592



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 111/446 (24%), Positives = 204/446 (45%), Gaps = 9/446 (2%)

Query: 47  ILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSF 106
           I+ S +P         P L  +P +V  IIK   N +L    FF I +       S  S 
Sbjct: 39  IIDSVNPIEPALESKVPFL--SPSIVTYIIKNPPN-SLLGFRFF-IWASKFRRLRSWVSH 94

Query: 107 DHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE 166
           +  ID+  +   +   W ++  +K      +   F ++ + Y      ++AV+ F  M +
Sbjct: 95  NMIIDMLIKDNGFELYWQVLKEIKRCGFSISADAFTVLIQAYAKMDMIEKAVESFEMMKD 154

Query: 167 HGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNK 225
             C+  + ++NT+L ++ +++ V  A  ++ ++ +     ++ +++++ +G C   +T  
Sbjct: 155 FDCKPDVFTYNTVLHVMVRKEVVLLALGIYNRMLKLNCLPNIATFSILIDGMCKSGKTQN 214

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
           AL++  EM  R + PN  TY I++ G  +A + + A+R F+ MK   C  D VTY  ++H
Sbjct: 215 ALQMFDEMTQRRILPNKITYTIIISGLCQAQKADVAYRLFIAMKDHGCIPDSVTYNALLH 274

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
           GF  +G +  A  +         +     Y+ +I  L +    E+A + + +M      P
Sbjct: 275 GFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCLIDGLFRARRFEDAQVWYRKMTEHNIKP 334

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           +   Y ++++GL   G+ + AL  +  M +    P+   YN LI+ +CD G ++    L 
Sbjct: 335 DVILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCYNALIKGYCDLGLLDEAKSLH 394

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            ++    C  +  TY ILI  M       D   A ++  EM   G  P   TFN +++G 
Sbjct: 395 LEISKNDCFSSACTYTILICGMCRSGLVGD---AQQIFNEMEKHGCYPSVVTFNALIDGF 451

Query: 466 LLIGNQGLAKEILRLQSRCGRLPRQF 491
              GN   A ++L  +   GR P  F
Sbjct: 452 CKAGNIEKA-QLLFYKMEIGRNPSLF 476



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 158/351 (45%), Gaps = 38/351 (10%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF--- 196
           T+ I+      +G    A +IF  M +HGC  S+ +FN ++D  CK   +EKA  LF   
Sbjct: 408 TYTILICGMCRSGLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKM 467

Query: 197 ----------KVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
                     ++ +G  +  D  S   +    C      KA  +L ++ D G  PN+ TY
Sbjct: 468 EIGRNPSLFLRLSQGANRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITY 527

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           NI++ G+ +AG I  A++ F E++ +    D VTY T+++G       + A  V D ++ 
Sbjct: 528 NILIHGFCKAGNINGAFKLFKELQLKGLSPDSVTYGTLINGLLSANREEDAFTVLDQILK 587

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G  P    Y + +   C+++ +  A  ++ + +      +S     V       GE+E 
Sbjct: 588 NGCTPITEVYKSFMTWSCRRNKITLAFSLWLKYLRSIPGRDSEVLKSVEENF-EKGEVEE 646

Query: 366 A----LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
           A    LE   ++ D +  P    Y I +   C AG +E  L++F           L+ +N
Sbjct: 647 AVRGLLEMDFKLNDFQLAP----YTIWLIGLCQAGRLEEALKIF---------FTLEEHN 693

Query: 422 ILISS------MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
           +L++       ++   K  +L +A ++ +  +D+G+M      NR+L  LL
Sbjct: 694 VLVTPPSCVKLIYRLLKVGNLDLAAEIFLYTIDKGYMLMPRICNRLLKSLL 744



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 133/338 (39%), Gaps = 50/338 (14%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMK-----SLSLGPTQ-- 138
           A   FN +  H  Y  S  +F+  ID   +  +      L ++M+     SL L  +Q  
Sbjct: 425 AQQIFNEMEKHGCYP-SVVTFNALIDGFCKAGNIEKAQLLFYKMEIGRNPSLFLRLSQGA 483

Query: 139 ------KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
                  +   + E+   +G   +A  I + + + G   ++ ++N ++   CK   +  A
Sbjct: 484 NRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIHGFCKAGNINGA 543

Query: 193 YNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY------ 245
           + LFK  + K    D ++Y  + NG     R   A  VL +++  G  P    Y      
Sbjct: 544 FKLFKELQLKGLSPDSVTYGTLINGLLSANREEDAFTVLDQILKNGCTPITEVYKSFMTW 603

Query: 246 -------------------------NIVLKGY---FRAGQIEEAWRFFLEMKKRKCEIDV 277
                                    + VLK     F  G++EEA R  LEM  +  +  +
Sbjct: 604 SCRRNKITLAFSLWLKYLRSIPGRDSEVLKSVEENFEKGEVEEAVRGLLEMDFKLNDFQL 663

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
             YT  + G    G ++ A  +F  +    VL +  +   +I  L K  +++ A  +F  
Sbjct: 664 APYTIWLIGLCQAGRLEEALKIFFTLEEHNVLVTPPSCVKLIYRLLKVGNLDLAAEIFLY 723

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEM-ERALEFVGRMK 374
            + KGYM      N +++ L  + +   RA + + RMK
Sbjct: 724 TIDKGYMLMPRICNRLLKSLLRSEDKRNRAFDLLSRMK 761


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 126/476 (26%), Positives = 230/476 (48%), Gaps = 28/476 (5%)

Query: 33  LPPAAADPAALASLILTSTDPRTL-------TQTLHCPSLHWTPQLVDQIIKRLWNHALK 85
           L P   D   LA +   + +PRT        ++TL  P++  T  +VD +I  +++   K
Sbjct: 84  LSPHEFDQCFLA-IGSNNVNPRTAFNFFHFASETLFEPAVAVT--VVDLLI-HVYSTQFK 139

Query: 86  ALHF---FNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKT 140
            L F   F + S        PS  + +  +    +  + +  + +   M    + P    
Sbjct: 140 HLGFGVVFELFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYL 199

Query: 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL-FKVF 199
           F+ +   + + G+ D A+++F  M + G   ++ ++N I+  LCK  ++++A+    K+ 
Sbjct: 200 FSTMVNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKME 259

Query: 200 RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
           + + K  +++Y V+ NG   ++R ++A  +LKEM DRG  PN   YN ++ GY R G I 
Sbjct: 260 KERVKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNIS 319

Query: 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319
            A +   +M       + VT  +++ G+    +++ A ++ + M+ GG + +  T+ ++I
Sbjct: 320 TALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVI 379

Query: 320 QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
             LC K   ++A+L   EM+ + + PN     +++ GLC  G+   A+E   R+ +    
Sbjct: 380 HRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFA 439

Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
            N  T N LI   C+AG  E   +L ++M   G+ L ++ +YN LI +     K ++   
Sbjct: 440 ANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSI-SYNTLILACCKEGKVEE--- 495

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC---GRLPRQF 491
             KL  EMV RG  P  +T+N +L+GL    N G  +E   L   C   G  P  +
Sbjct: 496 GFKLKEEMVRRGIQPDMYTYNMLLHGLC---NMGKIEEAGGLWHECKKNGNFPDAY 548



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 174/383 (45%), Gaps = 7/383 (1%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           +S  H + L  R   + +    +  M   +  P      ++       GK   A++++  
Sbjct: 376 TSVIHRLCLKCR---FDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYR 432

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKR 222
           + E G   +  + N ++  LC+    E+A  L K +       D ISYN +    C   +
Sbjct: 433 LLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGK 492

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
             +  ++ +EMV RG+ P++ TYN++L G    G+IEEA   + E KK     D  TY  
Sbjct: 493 VEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGI 552

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++ G+     ++    +F  MV   +  +   Y  +I+  C+  ++  A  + ++M  +G
Sbjct: 553 MIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRG 612

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
               S TY+ +I GL + G ++ A + +  M+ +   PNV  Y  LI  +C  G++ +  
Sbjct: 613 IPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVD 672

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
            + ++M      PN  TY I+I+      K  ++  A KLL EM  +G +P   T+N + 
Sbjct: 673 SILQEMSINNVHPNKITYTIMING---HCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALT 729

Query: 463 NGLLLIGNQGLAKEILRLQSRCG 485
           NG    G    A ++  L S  G
Sbjct: 730 NGFCKEGKMEEALKVCDLMSTGG 752



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 152/315 (48%), Gaps = 4/315 (1%)

Query: 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL-FKVFRGKFKADVIS 209
           AG  + A K+   M E G      S+NT++   CKE KVE+ + L  ++ R   + D+ +
Sbjct: 455 AGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYT 514

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           YN++ +G C + +  +A  +  E    G  P+  TY I++ GY +A ++EE  + F EM 
Sbjct: 515 YNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMV 574

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
             K E + V Y T++  +   G ++ A  + D M + G+  + ATY+++I  L     V+
Sbjct: 575 TMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVD 634

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
           +A  + +EM  +G  PN   Y  +I G C  G+M +    +  M  +   PN  TY I+I
Sbjct: 635 SANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMI 694

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
              C  G ++   +L  +M     +P+  TYN L +      K ++ L    L   M   
Sbjct: 695 NGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCDL---MSTG 751

Query: 450 GFMPRKFTFNRVLNG 464
           G      T+  +++G
Sbjct: 752 GISLDDITYTTLIDG 766



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 124/302 (41%), Gaps = 34/302 (11%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           + L   M    + P   T+ ++     + GK + A  ++    ++G      ++  ++D 
Sbjct: 497 FKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDG 556

Query: 183 LCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
            CK  +VE+   LF                                  +EMV   +  N 
Sbjct: 557 YCKANRVEEGEKLF----------------------------------QEMVTMKIEQNA 582

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
             Y  +++ Y   G + EA+R   +M+ R       TY++++HG   +G +  A  + D 
Sbjct: 583 VVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDE 642

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M   G+ P+V  Y A+I   CK   +     + +EM      PN  TY ++I G C  G 
Sbjct: 643 MRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGN 702

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           M+ A + +  M      P+  TYN L   FC  G++E  L++ + M +G    +  TY  
Sbjct: 703 MKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGISLDDITYTT 762

Query: 423 LI 424
           LI
Sbjct: 763 LI 764



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 82/171 (47%), Gaps = 1/171 (0%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177
           + R  + L   M+S  +  T  T++ +     + G  D A ++   M + G   ++  + 
Sbjct: 597 NMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYT 656

Query: 178 TILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
            ++   CK  ++ K  ++ +         + I+Y ++ NG C +     A ++L EM  +
Sbjct: 657 ALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQK 716

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
           G+ P+  TYN +  G+ + G++EEA +    M      +D +TYTT++ G+
Sbjct: 717 GIVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGISLDDITYTTLIDGW 767



 Score = 43.1 bits (100), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 1/104 (0%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           +L     V +++  M   ++ P + T+ I+   +   G    A K+   M + G      
Sbjct: 664 KLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAV 723

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGW 217
           ++N + +  CKE K+E+A  +  +   G    D I+Y  + +GW
Sbjct: 724 TYNALTNGFCKEGKMEEALKVCDLMSTGGISLDDITYTTLIDGW 767



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/131 (20%), Positives = 56/131 (42%), Gaps = 1/131 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M+   L P    +  +   Y   G+  +   I   M  +    +  ++  +++  C
Sbjct: 639 LLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHC 698

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K   ++ A  L      K    D ++YN + NG+C   +  +AL+V   M   G++ +  
Sbjct: 699 KLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGISLDDI 758

Query: 244 TYNIVLKGYFR 254
           TY  ++ G+ +
Sbjct: 759 TYTTLIDGWHK 769


>gi|242075962|ref|XP_002447917.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
 gi|241939100|gb|EES12245.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
          Length = 550

 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 168/330 (50%), Gaps = 4/330 (1%)

Query: 103 PSSFDHAIDL-AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           P ++++ ++L  AR R    V      ++     P   +F ++ +     G   +A+++ 
Sbjct: 182 PYAYNNLLNLLIARGRAQDAVALFESWIQDGLYSPDGWSFNVVIKGVCRVGNFQKALELV 241

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR--GKFKADVISYNVIANGWCL 219
             M E GC     + N ++D LC+ K+V + ++L +  +  G    +V++Y  + +G+C 
Sbjct: 242 ERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYTSVISGYCK 301

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
             R   AL V  +M++ G  PN  TYN+++ GY +A  +E A R + ++  R+C  DVVT
Sbjct: 302 AGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRRCPPDVVT 361

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           +++++ G+   G++  A  ++  M    + P+V T++ +I  LCK++    A+    E+ 
Sbjct: 362 FSSLIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCKQNRSAEALGFLRELN 421

Query: 340 GKGYM-PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
            +  + P +  YN VI  LC  G++E A   V  M++  C P+  TY ILI   C  G I
Sbjct: 422 MRADIAPQTFIYNPVIDILCKGGQVEEANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRI 481

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMF 428
              + LF KM    C P+  T N  IS + 
Sbjct: 482 PEAITLFHKMVETGCRPDKITVNSFISCVL 511



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 182/400 (45%), Gaps = 45/400 (11%)

Query: 78  RLWNHALKALHFFNILSYHP-TYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLS-LG 135
           RL   A  AL  F+ L   P +   S  S+ H I L  R   +R    L  +M   S   
Sbjct: 85  RLAPCAGSALRIFSALHSPPLSVPPSEQSYSHVITLLCRSGRHRDALKLFDQMTDQSGYL 144

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P    F+ +A    +AG  D AV +     + G R    ++N +L+LL    + + A  L
Sbjct: 145 PDAVFFSFVAGSCTNAGLLDAAVTLLTKASQFGRRIEPYAYNNLLNLLIARGRAQDAVAL 204

Query: 196 FK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
           F+  +  G +  D         GW                          ++N+V+KG  
Sbjct: 205 FESWIQDGLYSPD---------GW--------------------------SFNVVIKGVC 229

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV-LPSV 312
           R G  ++A      M +  C  D +T+  +V G     ++ R  ++   +   GV +P+V
Sbjct: 230 RVGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQRDGVCMPNV 289

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            TY ++I   CK   +E+A+ V+ +M+  G  PN+ TYNV+I G     +ME A+    +
Sbjct: 290 VTYTSVISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQ 349

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           +    C P+V T++ LI  +C  G+++  + ++++MG     PN+ T++I+I S+  + +
Sbjct: 350 LILRRCPPDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCKQNR 409

Query: 433 SDDLLVAGKLLIEMVDRG-FMPRKFTFNRVLNGLLLIGNQ 471
           S + L     L E+  R    P+ F +N V++ +L  G Q
Sbjct: 410 SAEAL---GFLRELNMRADIAPQTFIYNPVID-ILCKGGQ 445



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 86/206 (41%), Gaps = 44/206 (21%)

Query: 98  TYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRA 157
           TY    + +  A+D+ + +R YR +  ++ R       P   TF+ + + Y   G+ D A
Sbjct: 326 TYNVLINGYGKALDMESAVRMYRQL--ILRRCP-----PDVVTFSSLIDGYCRCGQLDDA 378

Query: 158 VKIFLSMHEHG---------------CRQSLNS---------------------FNTILD 181
           ++I+  M +H                C+Q+ ++                     +N ++D
Sbjct: 379 MRIWKEMGQHHIQPNVYTFSIIIHSLCKQNRSAEALGFLRELNMRADIAPQTFIYNPVID 438

Query: 182 LLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
           +LCK  +VE+A  +      K    D  +Y ++  G C+  R  +A+ +  +MV+ G  P
Sbjct: 439 ILCKGGQVEEANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVETGCRP 498

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFL 266
           +  T N  +    +AG   E  +  L
Sbjct: 499 DKITVNSFISCVLKAGMPNEVDQIML 524



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 83/180 (46%), Gaps = 5/180 (2%)

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK-GYMPNSTTYNVVIRGLCHTGEMERA 366
           V PS  +Y+ +I +LC+     +A+ +F++M  + GY+P++  ++ V     + G ++ A
Sbjct: 107 VPPSEQSYSHVITLLCRSGRHRDALKLFDQMTDQSGYLPDAVFFSFVAGSCTNAGLLDAA 166

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK-MGSGVCLPNLDTYNILIS 425
           +  + +            YN L+      G  +  + LFE  +  G+  P+  ++N++I 
Sbjct: 167 VTLLTKASQFGRRIEPYAYNNLLNLLIARGRAQDAVALFESWIQDGLYSPDGWSFNVVIK 226

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
            +    +  +   A +L+  M + G  P   T N +++GL          ++LR   R G
Sbjct: 227 GVC---RVGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQRDG 283


>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
          Length = 691

 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/386 (26%), Positives = 193/386 (50%), Gaps = 8/386 (2%)

Query: 103 PSSFDHAI--DLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P  F ++I  D  +R  D + + +L  +     +     T +I+       GK   A ++
Sbjct: 303 PDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEV 362

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCL 219
             S+   G   +   +NT+++  C+  ++E A++ F   + +  K D I+YN + NG C 
Sbjct: 363 LQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCK 422

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
            +R   A ++L EM D G+NP + T+N ++  Y R GQ+E+ +    EM++   + +VV+
Sbjct: 423 AERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVS 482

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y +IV+ F   G+I  A  + D M +  VLP+   YNA+I    +    + A ++ E+M 
Sbjct: 483 YGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMK 542

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             G  P+  TYN++I+GLC+  ++  A E +  + +    P+  +YN LI   C  G I+
Sbjct: 543 SNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNID 602

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
           + L+L ++M        + TY+ LIS +    + +++     L  +M+    +P     N
Sbjct: 603 KALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEY---LYQKMMQNNVVPSNAIHN 659

Query: 460 RVLNGLLLIGNQGLAKEILR--LQSR 483
            ++      GN+  A+++ +  LQ R
Sbjct: 660 IMVEAYSKYGNEIKAEDLRKEMLQKR 685



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 163/380 (42%), Gaps = 41/380 (10%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   ++ ++      AG+   AV++F  M E     +  ++NT++D   K   +E  + L
Sbjct: 198 PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 257

Query: 196 FK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
               V  G  K + I+YNV+ +G C   R  +   +L EM  + + P+  TY+I+  G  
Sbjct: 258 RDQMVCHG-LKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLS 316

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
           R G  +     F +  K    I   T + +++G    G++  A  V   +VN G++P+  
Sbjct: 317 RNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRV 376

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC--------------- 358
            YN +I   C+   +E A   F +M  +   P+  TYN +I GLC               
Sbjct: 377 IYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEM 436

Query: 359 --------------------HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
                                TG++E+    +  M+++  +PNV +Y  ++  FC  G+I
Sbjct: 437 QDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKI 496

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
              + + + M     LPN   YN +I +      +D   +   L+ +M   G  P   T+
Sbjct: 497 PEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFI---LVEKMKSNGISPSIVTY 553

Query: 459 NRVLNGLLLIGNQGLAKEIL 478
           N ++ GL        A+EI+
Sbjct: 554 NLLIKGLCNQSQISEAEEII 573



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 148/335 (44%), Gaps = 7/335 (2%)

Query: 133 SLGPTQKTFA--IIAERYVSAGKADRAVKIFLSMHEHGCRQ-SLNSFNTILDLLCKEKKV 189
           S G    TFA     +  V+AG    AV +   M   G    +  S+N ++  + +  + 
Sbjct: 157 SAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRG 216

Query: 190 EKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
             A  +F ++       + I+YN + +G            +  +MV  GL PN  TYN++
Sbjct: 217 GDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVL 276

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           L G  RAG++ E      EM  +K   D  TY+ +  G    G+ K   ++F   +  GV
Sbjct: 277 LSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGV 336

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
                T + ++  LCK   V  A  V + +V  G +P    YN +I G C TGE+E A  
Sbjct: 337 TIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFS 396

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
             G+MK    +P+  TYN LI   C A  I    +L  +M      P ++T+N LI +  
Sbjct: 397 TFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYG 456

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
              + +   +   +L EM + G  P   ++  ++N
Sbjct: 457 RTGQLEKCFI---VLSEMQENGLKPNVVSYGSIVN 488



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 121/268 (45%), Gaps = 6/268 (2%)

Query: 224 NKALEVLKEMVD--RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
           + AL +L ++ D  R   P+L++ N++L+     G+  +  R F  +       D   + 
Sbjct: 109 DGALRLLSDLADEARAPLPSLSSCNLLLEALLSLGRHADVRRAFGILASAGARPDTFAWN 168

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA-TYNAMIQVLCKKDSVENAILVFEEMVG 340
             V      G++  A  +   M   G  P  A +YN +I  + +     +A+ VF+EM  
Sbjct: 169 KAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTE 228

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           +  +PN  TYN +I G    G++E       +M     +PN  TYN+L+   C AG +  
Sbjct: 229 RAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGE 288

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
              L ++M S   +P+  TY+IL   +     S  +L    L  + +  G     +T + 
Sbjct: 289 TSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAML---SLFGKYLKNGVTIGDYTCSI 345

Query: 461 VLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           +LNGL   G   +A+E+L+     G +P
Sbjct: 346 LLNGLCKDGKVSIAEEVLQSLVNAGLVP 373


>gi|15220166|ref|NP_178170.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75264854|sp|Q9M8M3.1|PP136_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g80550, mitochondrial; Flags: Precursor
 gi|6730729|gb|AAF27119.1|AC018849_7 unknown protein; 31926-33272 [Arabidopsis thaliana]
 gi|332198297|gb|AEE36418.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 448

 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 119/441 (26%), Positives = 205/441 (46%), Gaps = 31/441 (7%)

Query: 23  SPLTTTSPAPLPPAAADPAALASL---ILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRL 79
           SP +    +  P +  D A   S      +S D +T+ + L C S  W            
Sbjct: 14  SPYSVRLLSVKPISNVDDAKFRSQEEEDQSSYDQKTVCEALTCYSNDWQ----------- 62

Query: 80  WNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRM-KSLSLGPTQ 138
                KAL FFN +     + H+  +F+  ID+  +  ++   W L++RM  +    P  
Sbjct: 63  -----KALEFFNWVERESGFRHTTETFNRVIDILGKYFEFEISWALINRMIGNTESVPNH 117

Query: 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-- 196
            TF I+ +RYV+A     A+  +  + +   R    SF  ++D LC+ K V +A  L   
Sbjct: 118 VTFRIVFKRYVTAHLVQEAIDAYDKLDDFNLRDE-TSFYNLVDALCEHKHVVEAEELCFG 176

Query: 197 -KVFRGKFK-ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             V    F  ++   +N+I  GW  +    K  E  K+M   G+  +L +Y+I +    +
Sbjct: 177 KNVIGNGFSVSNTKIHNLILRGWSKLGWWGKCKEYWKKMDTEGVTKDLFSYSIYMDIMCK 236

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
           +G+  +A + + EMK R+ ++DVV Y T++   G    ++    VF  M   G  P+VAT
Sbjct: 237 SGKPWKAVKLYKEMKSRRMKLDVVAYNTVIRAIGASQGVEFGIRVFREMRERGCEPNVAT 296

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           +N +I++LC+   + +A  + +EM  +G  P+S TY  +   L    E+   L   GRM 
Sbjct: 297 HNTIIKLLCEDGRMRDAYRMLDEMPKRGCQPDSITYMCLFSRLEKPSEI---LSLFGRMI 353

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
                P + TY +L+R F   G ++  L +++ M      P+   YN +I ++  +   D
Sbjct: 354 RSGVRPKMDTYVMLMRKFERWGFLQPVLYVWKTMKESGDTPDSAAYNAVIDALIQKGMLD 413

Query: 435 DLLVAGKLLIEMVDRGFMPRK 455
              +A +   EM++RG  PR+
Sbjct: 414 ---MAREYEEEMIERGLSPRR 431


>gi|225430658|ref|XP_002268375.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
           mitochondrial [Vitis vinifera]
 gi|296085168|emb|CBI28663.3| unnamed protein product [Vitis vinifera]
          Length = 454

 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 111/428 (25%), Positives = 192/428 (44%), Gaps = 44/428 (10%)

Query: 56  LTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAAR 115
           L +TL+   +  T  LV ++++   N   ++L FFN    H +Y  +   ++  +   AR
Sbjct: 63  LERTLNKLPISVTSDLVYRVLRSCPNSGTESLRFFNWARSHLSYQPTTLEYEELLKTLAR 122

Query: 116 LRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH-GCRQSLN 174
            + ++ +W + H+M++LS  PT    + I E +   G  D+AV++F        C Q++ 
Sbjct: 123 TKQFQPMWKIAHQMQTLS--PT--VVSSIIEEFGKHGLVDQAVEVFNKAKSALNCPQTIE 178

Query: 175 SFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
            +N++L  LC+ K    AY L + + R     +  +Y+V+ NGWC   +  +A + L+EM
Sbjct: 179 VYNSLLFALCEVKYFHGAYALIRRMIRKGVTPNKQTYSVLVNGWCAAGKMKEAQDFLEEM 238

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
             +G NP +   ++++ G   AG +E A     +M K  C  DV T  +++      GE 
Sbjct: 239 SRKGFNPPVRGRDLLVDGLLNAGYLEAAKEMVRKMTKEGCAPDVETLNSMLEAICKAGEA 298

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           +   ++++ +   GV P+V TY  MI   CK+  ++ A  +    +  G+ P  + Y  +
Sbjct: 299 EFCIDIYNDVCRLGVSPNVGTYKIMIPAACKEGRIDEAFRILHRSIEDGHRPFPSLYAPI 358

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           I+ LC  G+ + A  F   MK     PN   Y +LI   C  G                 
Sbjct: 359 IKALCRNGQFDDAFCFFSDMKVKGHPPNRPVYTMLIT-MCGRG----------------- 400

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGL 473
                         FV         A   L+EM +    P    F+ V +GL   G   L
Sbjct: 401 ------------GRFVD--------AANYLVEMTELNLTPISRCFDMVTDGLKNCGKHDL 440

Query: 474 AKEILRLQ 481
           A++I +L+
Sbjct: 441 ARKIEQLE 448



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 75/180 (41%), Gaps = 8/180 (4%)

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           P+   Y  +++ L +    +    +  +M       + T  + +I      G +++A+E 
Sbjct: 108 PTTLEYEELLKTLARTKQFQPMWKIAHQM----QTLSPTVVSSIIEEFGKHGLVDQAVEV 163

Query: 370 VGRMKDD-ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
             + K    C   ++ YN L+   C+         L  +M      PN  TY++L++   
Sbjct: 164 FNKAKSALNCPQTIEVYNSLLFALCEVKYFHGAYALIRRMIRKGVTPNKQTYSVLVNGWC 223

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
              K  +   A   L EM  +GF P     + +++GLL  G    AKE++R  ++ G  P
Sbjct: 224 AAGKMKE---AQDFLEEMSRKGFNPPVRGRDLLVDGLLNAGYLEAAKEMVRKMTKEGCAP 280



 Score = 43.1 bits (100), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 8/148 (5%)

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
            Y P +  Y  +++ L  T + +   +   +M+     P V +   +I  F   G +++ 
Sbjct: 105 SYQPTTLEYEELLKTLARTKQFQPMWKIAHQMQ--TLSPTVVSS--IIEEFGKHGLVDQA 160

Query: 402 LELFEKMGSGV-CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
           +E+F K  S + C   ++ YN L   +F   +      A  L+  M+ +G  P K T++ 
Sbjct: 161 VEVFNKAKSALNCPQTIEVYNSL---LFALCEVKYFHGAYALIRRMIRKGVTPNKQTYSV 217

Query: 461 VLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           ++NG    G    A++ L   SR G  P
Sbjct: 218 LVNGWCAAGKMKEAQDFLEEMSRKGFNP 245


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 110/401 (27%), Positives = 190/401 (47%), Gaps = 42/401 (10%)

Query: 117 RDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG--CRQSLN 174
           R    V  L+HRM  L   P   +++II +       + RA+ +F  M + G  C  ++ 
Sbjct: 207 RTEEAVNVLLHRMSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVV 266

Query: 175 SFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           ++NT++    KE +  KA +LF ++ R   K DV++YN+I +  C  +  +KA  VL++M
Sbjct: 267 AYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQM 326

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR---------------------- 271
              G  P+  TYN ++ GY   G+++EA + F +MK R                      
Sbjct: 327 TTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRS 386

Query: 272 --KCEI-----------DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
               EI           D+V+Y T++HG+   G       +F+ M + G+      +N +
Sbjct: 387 KEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNIL 446

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           I    K+  V++A+L+F EM  +G  P+  TY+ VI      G +  A+E   +M     
Sbjct: 447 IHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGI 506

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISSMFVRKKSDDLL 437
           +PN   Y+ +I+ FC  G + +  EL  +M   G+  P++  +N +I+S+    K   ++
Sbjct: 507 QPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLC---KDGRVM 563

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
            A  +   + D G  P   TF  +++G  L+G    A +IL
Sbjct: 564 DAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKIL 604



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 165/332 (49%), Gaps = 7/332 (2%)

Query: 151 AGKADRAVKIFL-SMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR---GKFKAD 206
           A + + AV + L  M E GC  ++ S++ IL  LC     ++A +LF++     G    +
Sbjct: 205 ANRTEEAVNVLLHRMSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPN 264

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           V++YN + +G+     T KA  +  EM  +G+ P++ TYN+++    +A  +++A     
Sbjct: 265 VVAYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLR 324

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           +M     + D VTY  ++HG+  +G +K A  +F  M + G++P++   N+ +  LCK  
Sbjct: 325 QMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHG 384

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
             + A  +F+ M  KG+ P+  +Y  ++ G    G     +     MK +    + + +N
Sbjct: 385 RSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFN 444

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
           ILI  +   G ++  + +F +M      P++ TY+ +IS+     +   L  A +   +M
Sbjct: 445 ILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAF---SRMGRLTDAMEKFNQM 501

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           V RG  P    ++ ++ G  + G    AKE++
Sbjct: 502 VARGIQPNTAVYHSIIQGFCMHGGLVKAKELV 533



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 173/374 (46%), Gaps = 5/374 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   + R       ++ +M +    P   T+  +   Y + G+   A K+F  M
Sbjct: 302 TYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKM 361

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
              G   ++   N+ L  LCK  + ++A  +F     K  K D++SY  + +G+      
Sbjct: 362 KSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWF 421

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
              + +   M   G+  +   +NI++  Y + G +++A   F EM+++    DVVTY+T+
Sbjct: 422 ADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTV 481

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +  F  +G +  A   F+ MV  G+ P+ A Y+++IQ  C    +  A  +  EM+ KG 
Sbjct: 482 ISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGI 541

Query: 344 -MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
             P+   +N VI  LC  G +  A +    + D    P+V T+  LI  +C  G++++  
Sbjct: 542 PRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAF 601

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           ++ + M       ++ TY+ L+   F   + +D L    L  EM  +G  P   T+  +L
Sbjct: 602 KILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLT---LFREMQRKGVKPNTVTYGIML 658

Query: 463 NGLLLIGNQGLAKE 476
            GL   G    A++
Sbjct: 659 AGLFRAGRTVAARK 672



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 156/342 (45%), Gaps = 38/342 (11%)

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC-RQSLNSFNTILDLLCK 185
           ++M +  + P    +  I + +   G   +A ++   M   G  R  +  FN++++ LCK
Sbjct: 499 NQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCK 558

Query: 186 EKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
           + +V  A+++F +      + DVI++  + +G+CLV + +KA ++L  M   G+  ++ T
Sbjct: 559 DGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDIVT 618

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           Y+ +L GYF+ G+I +    F EM+++  + + VTY  ++ G    G    AR  F  M+
Sbjct: 619 YSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMI 678

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM-------------------------- 338
             G   +V+ Y  ++  LC+ +  + AI++F+++                          
Sbjct: 679 ESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKE 738

Query: 339 ---------VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
                       G +PN +TY V+I  L   G +E A      M+     P  +  N +I
Sbjct: 739 EAKELFATISASGLLPNESTYGVMIINLLKDGAVEDANNMFSSMEKSGIVPGSRLLNRII 798

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
           R   + GEI +      K+     L    T ++++ S+F RK
Sbjct: 799 RMLLEKGEIAKAGNYLSKVDGKRILLEASTTSLML-SLFSRK 839



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 7/185 (3%)

Query: 308 VLP-SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           V+P +V TY+ ++   C+    +  +++F  ++  G   +  T + +++ LC+    E A
Sbjct: 152 VVPLTVHTYSILMDCCCRARRPDLGLVLFGCILRTGLKIHQITASTLLKCLCYANRTEEA 211

Query: 367 LE-FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG--SGVCLPNLDTYNIL 423
           +   + RM +  C PNV +Y+I+++  CD    +R L+LF+ M    G C PN+  YN +
Sbjct: 212 VNVLLHRMSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTV 271

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I   F   K  +   A  L  EM  +G  P   T+N +++ L        A+ +LR  + 
Sbjct: 272 IHGFF---KEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTT 328

Query: 484 CGRLP 488
            G  P
Sbjct: 329 NGAQP 333



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/277 (20%), Positives = 115/277 (41%), Gaps = 39/277 (14%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            R+ D   ++ LV     +   P   TF  + + Y   GK D+A KI  +M   G    +
Sbjct: 560 GRVMDAHDIFDLV---TDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDI 616

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKE 232
            +++T+LD   K  ++     LF+  + K  K + ++Y ++  G     RT  A +   E
Sbjct: 617 VTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHE 676

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG------ 286
           M++ G    ++ Y I+L G  R    +EA   F ++     +  +    T+++       
Sbjct: 677 MIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQR 736

Query: 287 ----------------------FGVV-------GEIKRARNVFDGMVNGGVLPSVATYNA 317
                                 +GV+       G ++ A N+F  M   G++P     N 
Sbjct: 737 KEEAKELFATISASGLLPNESTYGVMIINLLKDGAVEDANNMFSSMEKSGIVPGSRLLNR 796

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
           +I++L +K  +  A     ++ GK  +  ++T ++++
Sbjct: 797 IIRMLLEKGEIAKAGNYLSKVDGKRILLEASTTSLML 833



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 87/203 (42%), Gaps = 1/203 (0%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           TL   M+   + P   T+ I+      AG+   A K F  M E G   +++ +  IL  L
Sbjct: 637 TLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGL 696

Query: 184 CKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           C+    ++A  LF K+     K  +   N + N    V+R  +A E+   +   GL PN 
Sbjct: 697 CRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNE 756

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
           +TY +++    + G +E+A   F  M+K            I+      GEI +A N    
Sbjct: 757 STYGVMIINLLKDGAVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAKAGNYLSK 816

Query: 303 MVNGGVLPSVATYNAMIQVLCKK 325
           +    +L   +T + M+ +  +K
Sbjct: 817 VDGKRILLEASTTSLMLSLFSRK 839


>gi|356547408|ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Glycine max]
          Length = 631

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 106/392 (27%), Positives = 184/392 (46%), Gaps = 7/392 (1%)

Query: 58  QTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLR 117
           + L    L   P+LV +I+K     ++K + FF        + H  +++   I      R
Sbjct: 74  KALEVLKLKVDPRLVREILKIDVEVSVK-IQFFKWAGKRRNFEHDSTTYMALIRCLDEHR 132

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177
            +  VW  +  M   S        + I      A   +RA+ +F  +    CR + +++N
Sbjct: 133 MFGEVWKTIQDMVKGSCAMAPAELSEIVRILGKAKMVNRALSVFYQVKGRKCRPTASTYN 192

Query: 178 TILDLLCKEKKVEKAYNLFKVFRGKFKA--DVISYNVIANGWCLVKRTNKALEVLKEMVD 235
           +I+ +L +E   EK + L+     +     D ++Y+ + + +  + R + A+ +  EM +
Sbjct: 193 SIILMLMQEGHHEKVHELYNEMCSEVHCFPDTVTYSALISAFAKLNRDDSAIRLFDEMKE 252

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
            GL P    Y  ++  YF+ G++EEA     EM+ R+C + V TYT ++ G G  G ++ 
Sbjct: 253 NGLQPTAKIYTTLMGIYFKVGKVEEALGLVKEMRARRCLLTVFTYTELIRGLGKSGRVED 312

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
           A   +  M+  G  P V   N +I +L + + + +AI +F+EM      PN  TYN +I+
Sbjct: 313 AYMTYKNMLKDGCKPDVVLMNNLINILGRSNHLRDAIKLFDEMKLLNCAPNVVTYNTIIK 372

Query: 356 GLCHT-GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
            L      +  A  +  RMK D   P+  TY+ILI  +C    +E+ L L E+M      
Sbjct: 373 SLFEAKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCKTNRVEKALLLLEEMDEKGFP 432

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
           P    Y  LI+++ V K+ D   VA +L  E+
Sbjct: 433 PCPAAYCSLINTLGVAKRYD---VANELFQEL 461



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 102/430 (23%), Positives = 182/430 (42%), Gaps = 56/430 (13%)

Query: 76  IKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLG 135
           +  L+N     +H F       TY+   S+F       A+L    +   L   MK   L 
Sbjct: 207 VHELYNEMCSEVHCF---PDTVTYSALISAF-------AKLNRDDSAIRLFDEMKENGLQ 256

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           PT K +  +   Y   GK + A+ +   M    C  ++ ++  ++  L K  +VE AY  
Sbjct: 257 PTAKIYTTLMGIYFKVGKVEEALGLVKEMRARRCLLTVFTYTELIRGLGKSGRVEDAYMT 316

Query: 196 FK-VFRGKFKADVISYNVIANGWCLVKRTN---KALEVLKEMVDRGLNPNLTTYNIVLKG 251
           +K + +   K DV+  N + N   ++ R+N    A+++  EM      PN+ TYN ++K 
Sbjct: 317 YKNMLKDGCKPDVVLMNNLIN---ILGRSNHLRDAIKLFDEMKLLNCAPNVVTYNTIIKS 373

Query: 252 YFRA-GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
            F A   + EA  +F  MKK        TY+ ++ G+     +++A  + + M   G  P
Sbjct: 374 LFEAKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPP 433

Query: 311 SVATYNAMIQVL--CKKDSVEN---------------------------------AILVF 335
             A Y ++I  L   K+  V N                                 AI +F
Sbjct: 434 CPAAYCSLINTLGVAKRYDVANELFQELKENCGCSSARVYAVMIKHFGKCGRLNEAINLF 493

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
            EM   G  P+   YN ++ G+     M+ A      M+++ C P++ ++NI++      
Sbjct: 494 NEMKKLGCTPDVYAYNALMTGMVRAERMDEAFSLFRTMEENGCTPDINSHNIILNGLART 553

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
           G  +  LE+F KM +    P++ ++N ++  +    ++     A KL+ EM  +GF    
Sbjct: 554 GGPKGALEMFTKMKNSTIKPDVVSFNTILGCL---SRAGLFEEAAKLMQEMSSKGFQYDL 610

Query: 456 FTFNRVLNGL 465
            T++ +L  +
Sbjct: 611 ITYSSILEAV 620



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 98/193 (50%), Gaps = 1/193 (0%)

Query: 103 PSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFL 162
           P+++   I+     + Y     L   +K      + + +A++ + +   G+ + A+ +F 
Sbjct: 435 PAAYCSLINTLGVAKRYDVANELFQELKENCGCSSARVYAVMIKHFGKCGRLNEAINLFN 494

Query: 163 SMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVK 221
            M + GC   + ++N ++  + + +++++A++LF+         D+ S+N+I NG     
Sbjct: 495 EMKKLGCTPDVYAYNALMTGMVRAERMDEAFSLFRTMEENGCTPDINSHNIILNGLARTG 554

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
               ALE+  +M +  + P++ ++N +L    RAG  EEA +   EM  +  + D++TY+
Sbjct: 555 GPKGALEMFTKMKNSTIKPDVVSFNTILGCLSRAGLFEEAAKLMQEMSSKGFQYDLITYS 614

Query: 282 TIVHGFGVVGEIK 294
           +I+   G V + K
Sbjct: 615 SILEAVGKVDDCK 627



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 101/228 (44%), Gaps = 3/228 (1%)

Query: 103 PSSFDHAIDLAARLRDYRT--VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           PSSF ++I +    +  R      L+  M      P    +  +      A + D A ++
Sbjct: 398 PSSFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINTLGVAKRYDVANEL 457

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCL 219
           F  + E+    S   +  ++    K  ++ +A NLF   +      DV +YN +  G   
Sbjct: 458 FQELKENCGCSSARVYAVMIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVR 517

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
            +R ++A  + + M + G  P++ ++NI+L G  R G  + A   F +MK    + DVV+
Sbjct: 518 AERMDEAFSLFRTMEENGCTPDINSHNIILNGLARTGGPKGALEMFTKMKNSTIKPDVVS 577

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           + TI+      G  + A  +   M + G    + TY+++++ + K D 
Sbjct: 578 FNTILGCLSRAGLFEEAAKLMQEMSSKGFQYDLITYSSILEAVGKVDD 625


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 179/400 (44%), Gaps = 39/400 (9%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           S  +F   +  + + R+ +TV  L+  M+S+ L P   T+ I        GK D A +I 
Sbjct: 228 SLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIM 287

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK------------------- 202
             M + GC   + ++  ++D LC  +K++ A  LF   +                     
Sbjct: 288 KRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDC 347

Query: 203 -----------------FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
                            +  DV+++ ++ N  C   R N+A ++L  M  +G+ PNL TY
Sbjct: 348 GHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTY 407

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           N ++ G  RA ++++A   F  M+    E    TY  ++   G  G   +A   F+ M  
Sbjct: 408 NTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKA 467

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G+ P++   NA +  L +   +  A  +F E+   G  P+S TYN++++     G+++ 
Sbjct: 468 RGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDE 527

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           A++ +  M   +CEP+V   N LI     AG +E   ++F +M      P + TYNIL++
Sbjct: 528 AIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLA 587

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            +    K   +  A +L   M   G  P   TFN +L+ L
Sbjct: 588 GL---GKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCL 624



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 162/315 (51%), Gaps = 5/315 (1%)

Query: 179  ILDLLCKEKKVEKAYNLFKVFRGKF--KADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
            I+ +LCK KK   A N+F  F  +   K  +  YN++ +G+  V     A  + +EM   
Sbjct: 760  IIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSA 819

Query: 237  GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
            G  P+  TYN ++  + ++G+I E +  + EM  R C+ + +TY  ++        + +A
Sbjct: 820  GCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKA 879

Query: 297  RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
             +++  +V+G   P+  T+  +I  L K   +++A  +F+ MV  G  PNS  YN+++ G
Sbjct: 880  MDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNG 939

Query: 357  LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
                G ++ A EF  RM  +   P++++Y IL+   C AG ++  L  FEK+      P+
Sbjct: 940  YGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPD 999

Query: 417  LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKE 476
            L  YN++I+ +   +++++ L    L  EM +RG +P  +T+N ++  L ++G    A +
Sbjct: 1000 LVAYNLMINGLGRSQRTEEAL---SLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGK 1056

Query: 477  ILRLQSRCGRLPRQF 491
            I       G  P  F
Sbjct: 1057 IYEELQFIGLKPNVF 1071



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 97/366 (26%), Positives = 170/366 (46%), Gaps = 3/366 (0%)

Query: 58   QTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAAR 115
            + L C ++     ++  IIK L  H   ++     + +       P+   ++  ID    
Sbjct: 743  ERLVCRAICKDDSVLIPIIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLE 802

Query: 116  LRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS 175
            + +    W L   MKS    P   T+  + + +  +GK +    ++  M   GC+ +  +
Sbjct: 803  VHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTIT 862

Query: 176  FNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
            +N ++  L K  +++KA +L+  +  G F     ++  + +G     R + A E+   MV
Sbjct: 863  YNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMV 922

Query: 235  DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
              G  PN   YNI++ GY + G ++ A  FF  M K     D+ +YT +V    + G + 
Sbjct: 923  HYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVD 982

Query: 295  RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
             A + F+ +   G+ P +  YN MI  L +    E A+ +F EM  +G +P+  TYN +I
Sbjct: 983  DALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLI 1042

Query: 355  RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
              L   G +E A +    ++    +PNV TYN LIR +  +G  E    +++KM  G C 
Sbjct: 1043 LNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCD 1102

Query: 415  PNLDTY 420
            PN  T+
Sbjct: 1103 PNTGTF 1108



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 154/331 (46%), Gaps = 39/331 (11%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
             L     +WT    M++    P   TF I+      AG+ + A  +  +M + G   +L
Sbjct: 348 GHLDKVEKIWT---EMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNL 404

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRG-------------------------------K 202
           +++NT++  L +  +++ A +LF                                    K
Sbjct: 405 HTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEK 464

Query: 203 FKADVISYNVIANGWCL-----VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
            KA  I+ N++A    L     + R  +A  +  E+   GL P+  TYN+++K Y + GQ
Sbjct: 465 MKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQ 524

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           ++EA +   EM K +CE DV+   +++      G ++ A  +F  M    + P+V TYN 
Sbjct: 525 VDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNI 584

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           ++  L K+  ++ A+ +FE M G G  PN+ T+N ++  LC   E++ AL+   +M    
Sbjct: 585 LLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMN 644

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           C P+V T+N +I  F    +I+  + LF +M
Sbjct: 645 CRPDVLTFNTIIHGFIKQNQIKNAIWLFHQM 675



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 166/336 (49%), Gaps = 6/336 (1%)

Query: 130  KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV 189
            K L + PT K + ++ + ++     + A  +F  M   GC     ++N+++D   K  K+
Sbjct: 782  KELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKI 841

Query: 190  EKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
             + ++L+   + RG  K + I+YN++ +      R +KA+++   +V    +P   T+  
Sbjct: 842  NELFDLYDEMLTRG-CKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGP 900

Query: 248  VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
            ++ G  ++G++++A   F  M    C  +   Y  +V+G+G +G +  A   F  MV  G
Sbjct: 901  LIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEG 960

Query: 308  VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
            + P + +Y  ++ +LC    V++A+  FE++   G  P+   YN++I GL  +   E AL
Sbjct: 961  IRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEAL 1020

Query: 368  EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
                 M++    P++ TYN LI      G IE   +++E++      PN+ TYN LI   
Sbjct: 1021 SLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGY 1080

Query: 428  FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
             +   S+   +A  +  +M+  G  P   TF ++ N
Sbjct: 1081 TLSGNSE---LAYGIYKKMMVGGCDPNTGTFAQLPN 1113



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 155/358 (43%), Gaps = 37/358 (10%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID     R       L  +MKS S  P + T+  + +++   G  D+  KI+  M   G 
Sbjct: 306 IDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGY 365

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTN---- 224
              + +F  +++ LCK  ++ +A++L    R +    ++ +YN + +G     R +    
Sbjct: 366 APDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALD 425

Query: 225 -------------------------------KALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
                                          KALE  ++M  RG+ PN+   N  L    
Sbjct: 426 LFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLA 485

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
             G++ EA   F E+K      D VTY  ++  +  VG++  A  +   M      P V 
Sbjct: 486 EMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVI 545

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
             N++I  L K   VE A  +F  M      P   TYN+++ GL   G++++A++    M
Sbjct: 546 VINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESM 605

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
               C PN  T+N L+   C   E++  L++F KM +  C P++ T+N +I   F+++
Sbjct: 606 NGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHG-FIKQ 662



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 158/317 (49%), Gaps = 9/317 (2%)

Query: 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           H+ ++    +  A RL D      L   M+SL + PT  T+ ++ + +  +G   +A++ 
Sbjct: 405 HTYNTLISGLLRANRLDD---ALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALET 461

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCL 219
           F  M   G   ++ + N  L  L +  ++ +A  +F   +    A D ++YN++   +  
Sbjct: 462 FEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSK 521

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
           V + ++A+++L EM      P++   N ++   ++AG++EEAW+ F  M++      VVT
Sbjct: 522 VGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVT 581

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y  ++ G G  G+I++A  +F+ M   G  P+  T+N ++  LCK D V+ A+ +F +M 
Sbjct: 582 YNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMT 641

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
                P+  T+N +I G     +++ A+    +MK     P+  T   L+     +G+IE
Sbjct: 642 TMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQMK-KLLRPDHVTLCTLLPGVIKSGQIE 700

Query: 400 RGL----ELFEKMGSGV 412
                  + F ++GS +
Sbjct: 701 DAFRITEDFFYQVGSNI 717



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 156/378 (41%), Gaps = 43/378 (11%)

Query: 84  LKALHFFNILSYHPTYAHSPSSFDHAIDLAA---RLRDYRTVWTLVHRMKSLSLGPTQKT 140
           + AL +F  +   P   H+  + +H +++     R+ D   V+ L+ R     +     T
Sbjct: 105 IHALFYFKSVGELPNVVHTTETCNHMLEILRVHRRVEDMAFVFDLMQRQ---IIRRNVDT 161

Query: 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR 200
           + II +     G   +A      M E G   +  S+N ++  L                 
Sbjct: 162 YLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGLIHFL----------------- 204

Query: 201 GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
                       + +G+C      +ALEV + MV  GL P+L T++ ++    +   I+ 
Sbjct: 205 ------------LQSGFC-----KEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKT 247

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
                 EM+      ++ TYT  +   G  G+I  A  +   M + G  P V TY  +I 
Sbjct: 248 VMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLID 307

Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
            LC    +++A+ +F +M    + P+  TY  ++      G +++  +    M+ D   P
Sbjct: 308 ALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAP 367

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAG 440
           +V T+ IL+   C AG I    +L + M     LPNL TYN LIS +    + DD L   
Sbjct: 368 DVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDAL--- 424

Query: 441 KLLIEMVDRGFMPRKFTF 458
            L   M   G  P  +T+
Sbjct: 425 DLFSNMESLGVEPTAYTY 442



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 120/248 (48%), Gaps = 3/248 (1%)

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           N+ TY I+ K  F  G + +A     +M++    ++  +Y  ++H     G  K A  V+
Sbjct: 158 NVDTYLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGLIHFLLQSGFCKEALEVY 217

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
             MV+ G+ PS+ T++A++    K+ +++  + + EEM   G  PN  TY + IR L   
Sbjct: 218 RRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRD 277

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
           G+++ A   + RM DD C P+V TY +LI   C A +++  + LF KM S    P+  TY
Sbjct: 278 GKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTY 337

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
             L+           L    K+  EM   G+ P   TF  ++N L   G    A ++L  
Sbjct: 338 VTLLDKF---SDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDT 394

Query: 481 QSRCGRLP 488
             + G LP
Sbjct: 395 MRKQGVLP 402



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 144/291 (49%), Gaps = 4/291 (1%)

Query: 177 NTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235
           N +L++L   ++VE    +F +  R   + +V +Y +I     +     +A   L++M +
Sbjct: 128 NHMLEILRVHRRVEDMAFVFDLMQRQIIRRNVDTYLIIFKSLFIRGGLRQAPSALEKMRE 187

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
            G   N  +YN ++    ++G  +EA   +  M     +  + T++ ++   G    IK 
Sbjct: 188 AGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKT 247

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
              + + M + G+ P++ TY   I+VL +   ++ A  + + M   G  P+  TY V+I 
Sbjct: 248 VMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLID 307

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
            LC   +++ A+    +MK    +P+  TY  L+  F D G +++  +++ +M +    P
Sbjct: 308 ALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAP 367

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
           ++ T+ IL++++    K+  +  A  LL  M  +G +P   T+N +++GLL
Sbjct: 368 DVVTFTILVNALC---KAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLL 415



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 10/181 (5%)

Query: 307 GVLPSVA----TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           G LP+V     T N M+++L     VE+   VF+ M  +    N  TY ++ + L   G 
Sbjct: 115 GELPNVVHTTETCNHMLEILRVHRRVEDMAFVFDLMQRQIIRRNVDTYLIIFKSLFIRGG 174

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           + +A   + +M++     N  +YN LI +   +G  +  LE++ +M S    P+L T++ 
Sbjct: 175 LRQAPSALEKMREAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSA 234

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           L   M    K  ++     LL EM   G  P  +T+   +    ++G  G   E  R+  
Sbjct: 235 L---MVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIR---VLGRDGKIDEAYRIMK 288

Query: 483 R 483
           R
Sbjct: 289 R 289


>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 680

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 172/379 (45%), Gaps = 42/379 (11%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P+  T+ ++ E    +     A+ +   M   GC  ++ ++N I++ +C+E +V+ A  +
Sbjct: 185 PSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEI 244

Query: 196 FKVFRG-KFKADVISYNVIANGWCLVKR-------------------------------- 222
                   F+ D++SY  +  G C  +R                                
Sbjct: 245 LNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCR 304

Query: 223 ---TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
                +A++VL++M   G  PN T  NIV+    + G++++A+ F   M    C  D ++
Sbjct: 305 GGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTIS 364

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           YTT++ G    G  + A+ +   MV     P+  T+N  I +LC+K  +E AI + E M 
Sbjct: 365 YTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMP 424

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             G      TYN ++ G C  G ++ ALE    +    CEPN  TY  L+   C A  ++
Sbjct: 425 EYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLP---CEPNTITYTTLLTGLCHAERLD 481

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
              EL  +M    C  N  T+N+L+S  F +K   +   A +L+ +M++ G  P   TFN
Sbjct: 482 AAAELLAEMIQKDCPLNAVTFNVLVS-FFCQKGFVE--EAMELVNQMMEHGCTPNLITFN 538

Query: 460 RVLNGLLLIGNQGLAKEIL 478
            +L+G+    N   A E+L
Sbjct: 539 TLLDGITKDCNSEEALELL 557



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 97/318 (30%), Positives = 150/318 (47%), Gaps = 9/318 (2%)

Query: 163 SMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVK 221
           +M + GC+ S+ ++  +L+ +CK     +A N+    R K    ++++YNVI NG C   
Sbjct: 177 TMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREG 236

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
           R + A E+L  +   G  P++ +Y  VLKG   A + ++    F EM  +KC  + VT+ 
Sbjct: 237 RVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFD 296

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
            +V  F   G ++RA  V   M   G  P+    N +I  +CK+  V++A      M   
Sbjct: 297 MLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMY 356

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
           G  P++ +Y  V+RGLC  G  E A E +  M    C PN  T+N  I   C  G IE+ 
Sbjct: 357 GCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQA 416

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL-VAGKLLIEMVDRGFMPRKFTFNR 460
           ++L E M    C   + TYN L+    V+ + D  L +   L  E       P   T+  
Sbjct: 417 IKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCE-------PNTITYTT 469

Query: 461 VLNGLLLIGNQGLAKEIL 478
           +L GL        A E+L
Sbjct: 470 LLTGLCHAERLDAAAELL 487



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 153/321 (47%), Gaps = 7/321 (2%)

Query: 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH 167
           +AI    R+ D    +  ++ M      P   ++  +      AG+ + A ++   M   
Sbjct: 335 NAICKQGRVDD---AYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRK 391

Query: 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKA 226
            C  +  +FNT + +LC++  +E+A  L ++         +++YN + +G+C+  R + A
Sbjct: 392 NCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSA 451

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
           LE+   +      PN  TY  +L G   A +++ A     EM ++ C ++ VT+  +V  
Sbjct: 452 LELFNNL---PCEPNTITYTTLLTGLCHAERLDAAAELLAEMIQKDCPLNAVTFNVLVSF 508

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
           F   G ++ A  + + M+  G  P++ T+N ++  + K  + E A+ +   +V KG   +
Sbjct: 509 FCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLD 568

Query: 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
           + TY+ V+  L      E A++ +  ++D    P V  YN ++   C   E ++ ++ F 
Sbjct: 569 TITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFA 628

Query: 407 KMGSGVCLPNLDTYNILISSM 427
            M S  C+PN  TY ILI  +
Sbjct: 629 YMVSNGCMPNESTYIILIEGL 649



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 95/424 (22%), Positives = 174/424 (41%), Gaps = 49/424 (11%)

Query: 92  ILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149
           IL+   +Y   P   S+   +      R +  V  L   M      P + TF ++   + 
Sbjct: 244 ILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFC 303

Query: 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF--KADV 207
             G  +RA+++   M +HGC  +    N +++ +CK+ +V+ AY+      G +    D 
Sbjct: 304 RGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNM-GMYGCNPDT 362

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN-------------------------- 241
           ISY  +  G C   R   A E+L EMV +   PN                          
Sbjct: 363 ISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIEL 422

Query: 242 ---------LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
                    + TYN ++ G+   G+++ A   F  +    CE + +TYTT++ G      
Sbjct: 423 MPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLP---CEPNTITYTTLLTGLCHAER 479

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           +  A  +   M+      +  T+N ++   C+K  VE A+ +  +M+  G  PN  T+N 
Sbjct: 480 LDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNT 539

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           ++ G+      E ALE +  +       +  TY+ ++         E  +++   +    
Sbjct: 540 LLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMG 599

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
             P +  YN ++ ++  R ++D  +        MV  G MP + T+  ++ GL    ++G
Sbjct: 600 MRPKVGMYNKILFALCKRCETDQAI---DFFAYMVSNGCMPNESTYIILIEGL---AHEG 653

Query: 473 LAKE 476
           L KE
Sbjct: 654 LLKE 657



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 144/311 (46%), Gaps = 8/311 (2%)

Query: 90  FNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWT----LVHRMKSLSLGPTQKTFAIIA 145
           ++ L+    Y  +P +  +   L    R  R  W     L+  M   +  P + TF    
Sbjct: 347 YDFLNNMGMYGCNPDTISYTTVLRGLCRAGR--WEHAKELLPEMVRKNCPPNEVTFNTFI 404

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA 205
                 G  ++A+K+   M E+GC   + ++N ++   C + +V+ A  LF       + 
Sbjct: 405 CILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNL--PCEP 462

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           + I+Y  +  G C  +R + A E+L EM+ +    N  T+N+++  + + G +EEA    
Sbjct: 463 NTITYTTLLTGLCHAERLDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELV 522

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
            +M +  C  +++T+ T++ G       + A  +  G+V+ GV     TY++++ VL ++
Sbjct: 523 NQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSRE 582

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
           D  E AI +   +   G  P    YN ++  LC   E ++A++F   M  + C PN  TY
Sbjct: 583 DRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTY 642

Query: 386 NILIRYFCDAG 396
            ILI      G
Sbjct: 643 IILIEGLAHEG 653



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 103/235 (43%), Gaps = 38/235 (16%)

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           T T    G     E    R+    M+  G  PSV TY  +++ +CK      A+ V +EM
Sbjct: 154 TPTRPSSGASATAEGSATRSPCSTMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEM 213

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR-------------------------- 372
             KG  PN  TYNV+I G+C  G ++ A E + R                          
Sbjct: 214 RAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRW 273

Query: 373 ---------MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
                    M D +C PN  T+++L+R+FC  G +ER +++ ++M    C PN    NI+
Sbjct: 274 DDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIV 333

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           I+++  + + DD   A   L  M   G  P   ++  VL GL   G    AKE+L
Sbjct: 334 INAICKQGRVDD---AYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELL 385


>gi|6721172|gb|AAF26800.1|AC016829_24 hypothetical protein [Arabidopsis thaliana]
          Length = 572

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 113/402 (28%), Positives = 188/402 (46%), Gaps = 13/402 (3%)

Query: 62  CPSLHWTPQLVDQIIKRL---WNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRD 118
           C  ++ +  LV +++ R    W  AL  L +      H    HS  ++D A+D+  + + 
Sbjct: 144 CKRVNLSDGLVHKLLHRFRDDWRSALGILKWAESCKGH---KHSSDAYDMAVDILGKAKK 200

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           +  +   V RM+   L  T  T A I  R+  AG+ + AV IF  + E G  ++  S N 
Sbjct: 201 WDRMKEFVERMRGDKL-VTLNTVAKIMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESMNL 259

Query: 179 ILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           +LD LCKEK+VE+A  +    +     +  ++N+  +GWC   R  +AL  ++EM   G 
Sbjct: 260 LLDTLCKEKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGF 319

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
            P + +Y  +++ Y +  +  + +    EM+      + +TYTTI+       E + A  
Sbjct: 320 RPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALR 379

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE-EMVGKGYMPNSTTYNVVIRGL 357
           V   M   G  P    YN +I  L +   +E A  VF  EM   G   N++TYN +I   
Sbjct: 380 VATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMY 439

Query: 358 CHTGEMERALEFVGRMKDDE-CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP- 415
           CH  E ++A+E +  M+    C P+V TY  L+R     G++    +L ++M +   L  
Sbjct: 440 CHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSL 499

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           +  TY  LI  +    +++    A  L  EM+ +   PR  T
Sbjct: 500 DESTYTFLIQRLC---RANMCEWAYCLFEEMISQDITPRHRT 538


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 90/268 (33%), Positives = 142/268 (52%), Gaps = 6/268 (2%)

Query: 195 LFKVFRGKFKADVISYNVIANGWCLVKRTNKALE-VLKEMVDRGLNPNLTTYNIVLKGYF 253
           L  V +  F+ D I++  +  G C  KRT+ A++ VL+ M   G  PN+ +YNI+LKG  
Sbjct: 114 LGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLC 173

Query: 254 RAGQIEEAWRFFLEMKKR--KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
              + +EA      M      C  DVV+YTT+++GF   G++ +A   +  M++ G+LP+
Sbjct: 174 DENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPN 233

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
           V TY+++I  LCK  +++ A+ V   MV  G MPN  TYN ++ G C +G+ + A+ F+ 
Sbjct: 234 VVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLK 293

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
           +M  D  EP+V TYN L+ Y C  G      ++F+ M      P + TY  L+     + 
Sbjct: 294 KMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKG 353

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
               L+    LL  MV  G  P  + F+
Sbjct: 354 A---LVEMHGLLDLMVRNGIHPNHYVFS 378



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 181/365 (49%), Gaps = 18/365 (4%)

Query: 116 LRDYRTVWTLVHRMKSLSL------GPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           L+ Y T   LV     L L       P    F+I+   Y   GK D+A+ +F  M + G 
Sbjct: 346 LQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGL 405

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
                ++ T++ +LCK  +VE A   F ++   +     I YN + +  C+  + +KA E
Sbjct: 406 NPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKE 465

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           ++ EM+DRG+  +   +N ++  + + G++ E+ + F  M +   + D++TY+T++ G+ 
Sbjct: 466 LILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYC 525

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
           + G++  A  +   MV+ G+ P   TYN +I   CK   +E+A+++F EM   G  P+  
Sbjct: 526 LAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDII 585

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           TYN++++GL  T     A E    + +   +  + TYNI++   C     +  L +F+ +
Sbjct: 586 TYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNL 645

Query: 409 GSGVCLPNLD----TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
               CL +L     T+NI+I ++    ++D+   A  L   +   G +P   T++ +   
Sbjct: 646 ----CLTDLQLETRTFNIMIGALLKVGRNDE---AKDLFAALSANGLVPDVRTYSLMAEN 698

Query: 465 LLLIG 469
           L+  G
Sbjct: 699 LIEQG 703



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 181/380 (47%), Gaps = 6/380 (1%)

Query: 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG--C 169
           L A  R    +  ++ RM  L   P   ++ I+ +      ++  A+++   M + G  C
Sbjct: 136 LCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDC 195

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
              + S+ T+++   KE  ++KAY  + ++       +V++Y+ I    C  +  +KA+E
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAME 255

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           VL  MV  G+ PN  TYN ++ GY  +GQ +EA  F  +M     E DVVTY +++    
Sbjct: 256 VLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLC 315

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G    AR +FD M   G+ P + TY  ++Q    K ++     + + MV  G  PN  
Sbjct: 316 KNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHY 375

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            ++++I      G++++A+    +M+     P+  TY  +I   C +G +E  +  FE+M
Sbjct: 376 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM 435

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
                 P    YN LI S+ +  K D    A +L++EM+DRG       FN +++     
Sbjct: 436 IDERLSPGNIVYNSLIHSLCIFDKWDK---AKELILEMLDRGICLDTIFFNSIIDSHCKE 492

Query: 469 GNQGLAKEILRLQSRCGRLP 488
           G    ++++  L  R G  P
Sbjct: 493 GRVIESEKLFDLMVRIGVKP 512



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 97/424 (22%), Positives = 183/424 (43%), Gaps = 74/424 (17%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P  +T+  I   Y S+G+   A+     MH  G    + ++N+++D LCK  +  +A  +
Sbjct: 267 PNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKM 326

Query: 196 FKVFRGK-FKADVISYNVIANGWC----LVK----------------------------- 221
           F     +  K ++ +Y  +  G+     LV+                             
Sbjct: 327 FDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAK 386

Query: 222 --RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
             + ++A+ V  +M  +GLNP+  TY  V+    ++G++E+A R+F +M   +     + 
Sbjct: 387 QGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIV 446

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y +++H   +  +  +A+ +   M++ G+      +N++I   CK+  V  +  +F+ MV
Sbjct: 447 YNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMV 506

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             G  P+  TY+ +I G C  G+M+ A + +  M     +P+  TYN LI  +C    +E
Sbjct: 507 RIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRME 566

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP------ 453
             L LF +M S    P++ TYNI++  +F  +++     A +L + + + G         
Sbjct: 567 DALVLFREMESSGVSPDIITYNIILQGLFQTRRT---AAAKELYVGITESGTQLELSTYN 623

Query: 454 ----------------RKF-------------TFNRVLNGLLLIGNQGLAKEILRLQSRC 484
                           R F             TFN ++  LL +G    AK++    S  
Sbjct: 624 IILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSAN 683

Query: 485 GRLP 488
           G +P
Sbjct: 684 GLVP 687



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 150/300 (50%), Gaps = 4/300 (1%)

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYN 211
           K D+A ++ L M + G       FN+I+D  CKE +V ++  LF +  R   K D+I+Y+
Sbjct: 459 KWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYS 518

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
            + +G+CL  + ++A ++L  MV  G+ P+  TYN ++ GY +  ++E+A   F EM+  
Sbjct: 519 TLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESS 578

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
               D++TY  I+ G         A+ ++ G+   G    ++TYN ++  LCK +  + A
Sbjct: 579 GVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEA 638

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
           + +F+ +        + T+N++I  L   G  + A +    +  +   P+V+TY+++   
Sbjct: 639 LRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAEN 698

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
             + G +E   +LF  M    C  N    N ++  +  R    D+  AG  L  + ++ F
Sbjct: 699 LIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRG---DITRAGTYLFMIDEKHF 755



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/395 (24%), Positives = 175/395 (44%), Gaps = 42/395 (10%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           +  + R  +  + P   T+ I+      AG+ D       ++ + G R    +F  +L  
Sbjct: 76  YNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKG 135

Query: 183 LCKEKKVEKAYNLF--KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN- 239
           LC +K+   A ++   ++ +     +V SYN++  G C   R+ +ALE+L+ M D G + 
Sbjct: 136 LCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDC 195

Query: 240 -PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT----------------- 281
            P++ +Y  V+ G+F+ G +++A+  + EM  R    +VVTY+                 
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAME 255

Query: 282 ------------------TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
                             +IVHG+   G+ K A      M + GV P V TYN+++  LC
Sbjct: 256 VLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLC 315

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
           K      A  +F+ M  +G  P  TTY  +++G    G +      +  M  +   PN  
Sbjct: 316 KNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHY 375

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
            ++ILI  +   G++++ + +F KM      P+  TY  +I  +    + +D   A +  
Sbjct: 376 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVED---AMRYF 432

Query: 444 IEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
            +M+D    P    +N +++ L +      AKE++
Sbjct: 433 EQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELI 467



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 110/244 (45%), Gaps = 8/244 (3%)

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI--DVVTYTTI 283
           A  V  E++ RG   ++   N  L    R        R+    +    E+  ++ TY  +
Sbjct: 38  ARHVFDELLRRGRGASIYGLNCALADVARHSPAAAVSRYNRMARAGADEVTPNLCTYGIL 97

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI-LVFEEMVGKG 342
           +      G +         ++  G       +  +++ LC      +A+ +V   M   G
Sbjct: 98  IGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLG 157

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD--ECEPNVQTYNILIRYFCDAGEIER 400
            +PN  +YN++++GLC     + ALE +  M DD  +C P+V +Y  +I  F   G++++
Sbjct: 158 CIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDK 217

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
               + +M     LPN+ TY+ +I+++   +  D    A ++L  MV  G MP   T+N 
Sbjct: 218 AYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDK---AMEVLTSMVKNGVMPNCRTYNS 274

Query: 461 VLNG 464
           +++G
Sbjct: 275 IVHG 278


>gi|356566887|ref|XP_003551657.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 525

 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 109/352 (30%), Positives = 176/352 (50%), Gaps = 40/352 (11%)

Query: 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISY 210
           GK   A+++   M + G R +L  +N ++D LCKE  V +A  L     GK    DV +Y
Sbjct: 175 GKTRDAIELLRKMEKGGVRPNLIMYNMVVDGLCKEGLVTEACGLCSEMVGKGICIDVFTY 234

Query: 211 NVIANGWCLVKRTNKALEVLKEMV-DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           N + +G+C   +   A+ +L EMV    + P++ T+NI++    + G + EA   F  M 
Sbjct: 235 NSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFNILVDALCKLGMVAEARNVFGLMI 294

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
           KR  E DVV+   +++G+ + G +  A+ VFD MV  G LP+V +Y+ +I   CK   V+
Sbjct: 295 KRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGKLPNVISYSTLINGYCKVKMVD 354

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE--------------------------- 362
            A+ +  EM  +  +P++ TYN ++ GL  +G                            
Sbjct: 355 EALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVLL 414

Query: 363 --------MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
                   +++AL     + D    PN++TYNILI   C  G ++   E+F+ +    C 
Sbjct: 415 DDYLKRECLDKALALFQHIVDTGISPNIRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCR 474

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
           PN+ TYNI+I+ +   ++   L  A  LL+EMVD GF P   TF+ ++  LL
Sbjct: 475 PNIRTYNIMINGL---RREGLLDEAEALLLEMVDDGFPPNAVTFDPLVRALL 523



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 123/439 (28%), Positives = 194/439 (44%), Gaps = 45/439 (10%)

Query: 89  FFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSL-GPTQKTFAIIAER 147
           F  +L  HP    S  S +  +    + + Y TV +L   + S     P+  T +I    
Sbjct: 43  FHRMLHLHP--PPSIVSLNKLLSSIMKTKHYPTVVSLCSHLDSKGTPKPSLVTLSIFINS 100

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKA 205
               G+   A  +   + + G      +  T++  LC + +  +A NL+   V +G F  
Sbjct: 101 LTHLGQMGLAFSVMAKIVKRGFGVDPFTLTTLMKGLCLKGRTFEALNLYDHAVSKG-FSF 159

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           D + Y  + NG C + +T  A+E+L++M   G+ PNL  YN+V+ G  + G + EA    
Sbjct: 160 DEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVDGLCKEGLVTEACGLC 219

Query: 266 LEMKKRKCEIDVVTYTTIVHGF-------GVV---------------------------- 290
            EM  +   IDV TY +++HGF       G V                            
Sbjct: 220 SEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFNILVDALCK 279

Query: 291 -GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
            G +  ARNVF  M+  G+ P V + NA++   C +  +  A  VF+ MV +G +PN  +
Sbjct: 280 LGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGKLPNVIS 339

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
           Y+ +I G C    ++ AL  +  M      P+  TYN L+     +G +    +L E M 
Sbjct: 340 YSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYEWDLVEAMR 399

Query: 410 SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
           +    P+L TYN+L+     R+  D  L    L   +VD G  P   T+N +++GL   G
Sbjct: 400 ASGQAPDLITYNVLLDDYLKRECLDKALA---LFQHIVDTGISPNIRTYNILIDGLCKGG 456

Query: 470 NQGLAKEILRLQSRCGRLP 488
               AKEI +L S  G  P
Sbjct: 457 RMKAAKEIFQLLSVKGCRP 475



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 152/292 (52%), Gaps = 4/292 (1%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSM-HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV 198
           T+  +   +  AG+   AV++   M  +   R  + +FN ++D LCK   V +A N+F +
Sbjct: 233 TYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFNILVDALCKLGMVAEARNVFGL 292

Query: 199 F--RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256
              RG  + DV+S N + NGWCL    ++A EV   MV+RG  PN+ +Y+ ++ GY +  
Sbjct: 293 MIKRG-LEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGKLPNVISYSTLINGYCKVK 351

Query: 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
            ++EA R   EM +R    D VTY  ++ G    G +    ++ + M   G  P + TYN
Sbjct: 352 MVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYEWDLVEAMRASGQAPDLITYN 411

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
            ++    K++ ++ A+ +F+ +V  G  PN  TYN++I GLC  G M+ A E    +   
Sbjct: 412 VLLDDYLKRECLDKALALFQHIVDTGISPNIRTYNILIDGLCKGGRMKAAKEIFQLLSVK 471

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
            C PN++TYNI+I      G ++    L  +M      PN  T++ L+ ++ 
Sbjct: 472 GCRPNIRTYNIMINGLRREGLLDEAEALLLEMVDDGFPPNAVTFDPLVRALL 523



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 101/191 (52%), Gaps = 1/191 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   +++ +   Y      D A+++   MH+        ++N +LD L K  +V   ++L
Sbjct: 335 PNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYEWDL 394

Query: 196 FKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            +  R   +A D+I+YNV+ + +   +  +KAL + + +VD G++PN+ TYNI++ G  +
Sbjct: 395 VEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGISPNIRTYNILIDGLCK 454

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G+++ A   F  +  + C  ++ TY  +++G    G +  A  +   MV+ G  P+  T
Sbjct: 455 GGRMKAAKEIFQLLSVKGCRPNIRTYNIMINGLRREGLLDEAEALLLEMVDDGFPPNAVT 514

Query: 315 YNAMIQVLCKK 325
           ++ +++ L +K
Sbjct: 515 FDPLVRALLEK 525


>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 115/461 (24%), Positives = 206/461 (44%), Gaps = 43/461 (9%)

Query: 69  PQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVW-TLVH 127
           P+ V  +I R     +KAL  FN +     + H+ S++   I+       +  +   LV 
Sbjct: 7   PKHVTTVI-RCQKDPMKALEMFNSMRKEDGFKHTLSTYRSIIEKLGLYGKFEAMEEVLVD 65

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
             +++     +  +    + Y   GK   AV +F  M  + C  ++ S+N I+ +L    
Sbjct: 66  MRQNVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSG 125

Query: 188 KVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
             ++A+ ++   R +    DV S+ +    +C   R + AL +L  M  +G   N+  Y 
Sbjct: 126 YFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYC 185

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
            V+ G++     +E +  F +M      + + T+  ++H     G++K    + D ++  
Sbjct: 186 TVVGGFYEENFKDEGYELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKR 245

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           GVLP++ TYN  IQ LC+K  ++ A+ +   ++ +G  P+  TYN +I GLC   + + A
Sbjct: 246 GVLPNLFTYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEA 305

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDA------------------------------- 395
             ++G++ ++  EP+  TYN LI  +C                                 
Sbjct: 306 EVYLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDG 365

Query: 396 ----GEIERGLELF-EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450
               GE  R L LF E +G G+  PN+  YN LI  +        +L A +L  EM ++G
Sbjct: 366 LCHEGETNRALALFNEALGKGI-KPNVILYNTLIKGL---SNQGLILEAAQLASEMSEKG 421

Query: 451 FMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
            +P   TFN ++NGL  +G    A  ++++    G  P  F
Sbjct: 422 LIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIF 462



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 178/358 (49%), Gaps = 5/358 (1%)

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
            L P   T+  +   Y   G    A +I ++   +G      ++ +++D LC E +  +A
Sbjct: 316 GLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRA 375

Query: 193 YNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
             LF    GK  K +VI YN +  G        +A ++  EM ++GL P + T+NI++ G
Sbjct: 376 LALFNEALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNG 435

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
             + G + +A      M  +    D+ T+  ++HG+    +++ A  + D M++ GV P 
Sbjct: 436 LCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPD 495

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
           V TYN+++  LCK    E+ +  ++ MV KG  PN  T+N+++  LC   ++++AL  + 
Sbjct: 496 VYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLE 555

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP-NLDTYNILISSMFVR 430
            MK+    P+  T+  LI  FC  G+++    LF KM     +  +  TYNI+I + F  
Sbjct: 556 EMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEVYMVSCSTPTYNIIIHA-FTE 614

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           K   ++ +A KL  EMVDR   P  +T+  +++G    GN  L  + L      G +P
Sbjct: 615 KL--NVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVDLGYKFLLEMMENGFIP 670



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 104/381 (27%), Positives = 180/381 (47%), Gaps = 12/381 (3%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           S+F+  + +  +  D +    L+ ++    + P   T+    +     G+ D AV++   
Sbjct: 217 STFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAVRMVGR 276

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF-----KADVISYNVIANGWC 218
           + + G +  + ++N ++  LCK  K ++A    +V+ GK      + D  +YN +  G+C
Sbjct: 277 LIDQGPKPDVVTYNYLIYGLCKNSKFQEA----EVYLGKLVNEGLEPDSFTYNTLIAGYC 332

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
                  A  +L   V  G  P+  TY  ++ G    G+   A   F E   +  + +V+
Sbjct: 333 KGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVI 392

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
            Y T++ G    G I  A  +   M   G++P V T+N ++  LCK   V +A  + + M
Sbjct: 393 LYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVM 452

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
           + KGY P+  T+N++I G     +ME ALE +  M D+  +P+V TYN L+   C   + 
Sbjct: 453 ISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKY 512

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           E  +E ++ M    C PNL T+NIL+ S+    K D  L    LL EM ++   P   TF
Sbjct: 513 EDVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKAL---GLLEEMKNKSVNPDAVTF 569

Query: 459 NRVLNGLLLIGNQGLAKEILR 479
             +++G    G+   A  + R
Sbjct: 570 GTLIDGFCKNGDLDGAYTLFR 590



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 131/274 (47%), Gaps = 8/274 (2%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAG---KADRAVKIFLSMHEHGCRQSLNSFNTILD 181
           L   M    L P  +TF I+       G    AD  VK+ +S    G    + +FN ++ 
Sbjct: 413 LASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMIS---KGYFPDIFTFNILIH 469

Query: 182 LLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
               + K+E A  +  V        DV +YN + NG C   +    +E  K MV++G  P
Sbjct: 470 GYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAP 529

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           NL T+NI+L+   R  ++++A     EMK +    D VT+ T++ GF   G++  A  +F
Sbjct: 530 NLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLF 589

Query: 301 DGMVNGGVLP-SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
             M    ++  S  TYN +I    +K +V  A  +F+EMV +   P+  TY +++ G C 
Sbjct: 590 RKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCK 649

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           TG ++   +F+  M ++   P++ T   +I   C
Sbjct: 650 TGNVDLGYKFLLEMMENGFIPSLTTLGRVINCLC 683



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 109/261 (41%), Gaps = 37/261 (14%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           LV  M S    P   TF I+   Y +  K + A++I   M ++G    + ++N++L+ LC
Sbjct: 448 LVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLC 507

Query: 185 KEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  K E     +K    K  A ++ ++N++    C   + +KAL +L+EM ++ +NP+  
Sbjct: 508 KTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAV 567

Query: 244 T------------------------------------YNIVLKGYFRAGQIEEAWRFFLE 267
           T                                    YNI++  +     +  A + F E
Sbjct: 568 TFGTLIDGFCKNGDLDGAYTLFRKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQE 627

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M  R    D  TY  +V GF   G +         M+  G +PS+ T   +I  LC +D 
Sbjct: 628 MVDRCLGPDGYTYRLMVDGFCKTGNVDLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDR 687

Query: 328 VENAILVFEEMVGKGYMPNST 348
           V  A  +   MV KG +P + 
Sbjct: 688 VYEAAGIIHRMVQKGLVPEAV 708


>gi|225447562|ref|XP_002269867.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Vitis vinifera]
          Length = 616

 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 176/376 (46%), Gaps = 4/376 (1%)

Query: 89  FFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERY 148
           F  IL  +     SP  FD      A+++  R    +  +MK     P  ++        
Sbjct: 230 FEAILYSYRICDSSPCVFDSLFKTYAQMKKLRNAIDVFCQMKDYGFLPRVESCNAYISAS 289

Query: 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADV 207
           +S  + D A+  +  M  +    ++ + N ++   CK  K+EKA  +FK      F   +
Sbjct: 290 ISLQRGDIALTFYREMQRYRISPNVYTLNMVMCAFCKWGKLEKAIEVFKRMETMGFSPTI 349

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
            SYN +  G+C     N  +++   M   G+ P+  T+N ++ G+ R G++ EA + F E
Sbjct: 350 TSYNTLIAGYCNKGLLNSGMKLKILMEKNGVRPDDVTFNTLINGFCRGGKLHEANKIFSE 409

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           MK      + +TY T+++G+  VG  +    + D M+  G+   + TYNA+I  LC +  
Sbjct: 410 MKANDVVPNTITYNTLINGYSQVGNSEMGGRLHDEMLRNGIKADILTYNALILGLCMEGR 469

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
            + A  + +E+  +  +PNS+T++ +I G C     ERA +    M    C PN  T+ +
Sbjct: 470 TKKAAYLVKELDRENLVPNSSTFSALITGQCVRKNSERAFQLYKSMIRSGCHPNYHTFKM 529

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           LI  FC   + +  +E+  +M      P+ DT + L   +++  K +   +A KL  EM 
Sbjct: 530 LISTFCKNEDFDGAVEVVREMSERSIAPDSDTLSELCRGLWLSGKEE---LALKLCKEME 586

Query: 448 DRGFMPRKFTFNRVLN 463
            +  MP  F  ++ +N
Sbjct: 587 MKHLMPEGFDKSKTIN 602



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 131/275 (47%), Gaps = 1/275 (0%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           RM+++   PT  ++  +   Y + G  +  +K+ + M ++G R    +FNT+++  C+  
Sbjct: 339 RMETMGFSPTITSYNTLIAGYCNKGLLNSGMKLKILMEKNGVRPDDVTFNTLINGFCRGG 398

Query: 188 KVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
           K+ +A  +F   +      + I+YN + NG+  V  +     +  EM+  G+  ++ TYN
Sbjct: 399 KLHEANKIFSEMKANDVVPNTITYNTLINGYSQVGNSEMGGRLHDEMLRNGIKADILTYN 458

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
            ++ G    G+ ++A     E+ +     +  T++ ++ G  V    +RA  ++  M+  
Sbjct: 459 ALILGLCMEGRTKKAAYLVKELDRENLVPNSSTFSALITGQCVRKNSERAFQLYKSMIRS 518

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G  P+  T+  +I   CK +  + A+ V  EM  +   P+S T + + RGL  +G+ E A
Sbjct: 519 GCHPNYHTFKMLISTFCKNEDFDGAVEVVREMSERSIAPDSDTLSELCRGLWLSGKEELA 578

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
           L+    M+     P     +  I +  ++ E E G
Sbjct: 579 LKLCKEMEMKHLMPEGFDKSKTINFRAESEEKENG 613



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 144/337 (42%), Gaps = 57/337 (16%)

Query: 171 QSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK---------FKADVISYNVIANGWCL-- 219
           Q+L +++ IL +L K  K + A ++ K   G          F+A + SY +  +  C+  
Sbjct: 189 QTLETYSIILHILTKNHKFKSAESVLKGILGSGSIDHPSKLFEAILYSYRICDSSPCVFD 248

Query: 220 --------VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
                   +K+   A++V  +M D G  P + + N  +       + + A  F+ EM++ 
Sbjct: 249 SLFKTYAQMKKLRNAIDVFCQMKDYGFLPRVESCNAYISASISLQRGDIALTFYREMQRY 308

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
           +                                   + P+V T N ++   CK   +E A
Sbjct: 309 R-----------------------------------ISPNVYTLNMVMCAFCKWGKLEKA 333

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
           I VF+ M   G+ P  T+YN +I G C+ G +   ++    M+ +   P+  T+N LI  
Sbjct: 334 IEVFKRMETMGFSPTITSYNTLIAGYCNKGLLNSGMKLKILMEKNGVRPDDVTFNTLING 393

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
           FC  G++    ++F +M +   +PN  TYN LI+       S+   + G+L  EM+  G 
Sbjct: 394 FCRGGKLHEANKIFSEMKANDVVPNTITYNTLINGYSQVGNSE---MGGRLHDEMLRNGI 450

Query: 452 MPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
                T+N ++ GL + G    A  +++   R   +P
Sbjct: 451 KADILTYNALILGLCMEGRTKKAAYLVKELDRENLVP 487


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 173/367 (47%), Gaps = 4/367 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   +  D   V  LV  M+         T+  +   +   G+ ++A   F  M
Sbjct: 237 TYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEM 296

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
              G   ++ +F+T +D  CKE  V++A  LF   R +    +  +Y  + +G C   R 
Sbjct: 297 KRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRL 356

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A+ +L EMV +GL PN+ TY +++ G  + G++ EA      M++   + + + YTT+
Sbjct: 357 DDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTL 416

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +HG  +    +RA ++ + M N G+   V+ Y  +I  LCK   V+ A  +  +M G G 
Sbjct: 417 IHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGL 476

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN+  Y  ++  L   G+   A+  + ++ D   +PNV TY  LI   C AG I   + 
Sbjct: 477 RPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAIS 536

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
            F KM      PN+  Y  LI       K   L  A  L+ EM+D+G    K  +  +++
Sbjct: 537 HFNKMRELGLDPNVQAYTALIDGFC---KIGSLNKAMHLMNEMIDKGMSLDKVVYTSLID 593

Query: 464 GLLLIGN 470
           G +   N
Sbjct: 594 GYMKQAN 600



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 180/397 (45%), Gaps = 17/397 (4%)

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSA----GKA 154
           +AHS       +    R     ++  L+HR  +L+LGP +     + +  +S     G  
Sbjct: 92  FAHSRRLLSRLLGAGHRPHLAASLVDLLHR-AALALGPRRSALPSVVDTLLSLLADHGLL 150

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK---VEKAYNLFKVFRGKFKADVISYN 211
           D AV+    + +     +  + N IL  L + ++   V + ++L  V       +V ++N
Sbjct: 151 DDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRLFDLLPV------PNVFTFN 204

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
           ++ +  C      +A  +   M   G +P++ TYN ++ GY + G +EE  +   EM+K 
Sbjct: 205 IVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKS 264

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
            C  DVVTY  +++ F   G +++A + F  M   GV+ +V T++  +   CK+  V+ A
Sbjct: 265 GCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEA 324

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
           + +F +M  +G MPN  TY  ++ G C  G ++ A+  +  M      PNV TY +++  
Sbjct: 325 MKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDG 384

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
            C  G++     +   M  G    N   Y  LI   F+   S+  L    LL +M ++G 
Sbjct: 385 LCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERAL---DLLNQMKNKGM 441

Query: 452 MPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
                 +  ++ GL        AK +L   + CG  P
Sbjct: 442 ELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRP 478



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 164/365 (44%), Gaps = 8/365 (2%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L  +M+   + P + T+  + +    AG+ D A+ +   M   G   ++ ++  ++D LC
Sbjct: 327 LFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLC 386

Query: 185 KEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           KE KV +A N+  +  RG  KA+ + Y  + +G  +   + +AL++L +M ++G+  +++
Sbjct: 387 KEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVS 446

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            Y  ++ G  +  +++EA     +M       + V YTTI+      G+   A  +   +
Sbjct: 447 LYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKI 506

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           ++ G  P+V TY A+I  LCK  S+  AI  F +M   G  PN   Y  +I G C  G +
Sbjct: 507 LDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSL 566

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
            +A+  +  M D     +   Y  LI  +     ++    L  KM       +L  Y   
Sbjct: 567 NKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCF 626

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN----QGLAKEILR 479
           IS         +   A  +L EM+  G  P K  +N ++     +GN      L  E+  
Sbjct: 627 ISGFCNMNMMQE---ARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASSLQNEMES 683

Query: 480 LQSRC 484
           + S C
Sbjct: 684 VLSSC 688


>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
 gi|224033903|gb|ACN36027.1| unknown [Zea mays]
          Length = 655

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 172/383 (44%), Gaps = 42/383 (10%)

Query: 85  KALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           +ALH    L   P++   P   S++  +      + +  V  L+  M  ++  P   TF 
Sbjct: 210 EALHLLRDL---PSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFN 266

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK 202
            +       G  +R  ++   M EHGC   +  + TI+D +CKE  +E A+         
Sbjct: 267 TLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAH--------- 317

Query: 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262
                                    E+L  M   GL PN+  YN +LKG   A + EE  
Sbjct: 318 -------------------------EILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETE 352

Query: 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322
               EM  + C +D VT+  +V  F   G + R   + + M+  G +P V TY  +I   
Sbjct: 353 ELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGF 412

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
           CK+  ++ A+++ + M   G  PN+ +Y +V++GLC       A + + +M    C  N 
Sbjct: 413 CKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNP 472

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
            T+N LI + C  G +E+ +EL ++M    C P+L +Y+ +I  +    K+D+ L   +L
Sbjct: 473 ITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEAL---EL 529

Query: 443 LIEMVDRGFMPRKFTFNRVLNGL 465
           L  MV++G  P    ++ + + L
Sbjct: 530 LNVMVNKGMSPNTIIYSSIASAL 552



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 131/279 (46%), Gaps = 3/279 (1%)

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           Y+VI    C       A+ VL+++  RG   ++   N+VL      G ++EA     ++ 
Sbjct: 160 YHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLP 219

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
              CE DVV+Y  ++ G  +       + + + MV     P++ T+N +I  LC+    E
Sbjct: 220 SFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFE 279

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
               V  +MV  G  P+   Y  +I G+C  G +E A E + RM     +PNV  YN L+
Sbjct: 280 RVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLL 339

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
           +  C A   E   EL  +M    C  +  T+NIL+   F +    D ++  +LL +M++R
Sbjct: 340 KGLCSAERWEETEELLAEMFDKDCPLDDVTFNILV-DFFCQNGLVDRVI--ELLEQMLER 396

Query: 450 GFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           G MP   T+  V+NG    G    A  +L+  + CG  P
Sbjct: 397 GCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKP 435



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 110/256 (42%), Gaps = 6/256 (2%)

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           YN +  G+C   +   A  +   +    + PN  TY  V++     G+I +A     EM 
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAV---PVPPNAYTYFPVVRALCARGRIADALAVLDEMP 149

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
           +R C      Y  I+      G  + A  V + +   G    V   N ++  +C + SV+
Sbjct: 150 RRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVD 209

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
            A+ +  ++   G  P+  +YN V++GLC         E +  M    C PN+ T+N LI
Sbjct: 210 EALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLI 269

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
            Y C  G  ER  E+  +M    C P++  Y  +I  +    K   L VA ++L  M   
Sbjct: 270 SYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGIC---KEGHLEVAHEILNRMPSY 326

Query: 450 GFMPRKFTFNRVLNGL 465
           G  P    +N +L GL
Sbjct: 327 GLKPNVVCYNTLLKGL 342



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 96/221 (43%), Gaps = 36/221 (16%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M +    P   ++ I+ +   SA +   A  +   M + GC  +  +FNT+++ LC
Sbjct: 424 LLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLC 483

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL- 242
           K+  VE+A  L K +       D+ISY+ + +G     +T++ALE+L  MV++G++PN  
Sbjct: 484 KKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTI 543

Query: 243 ---------------------------TT-------YNIVLKGYFRAGQIEEAWRFFLEM 268
                                      TT       YN V+    + G+ E A  F   M
Sbjct: 544 IYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYM 603

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
               C  +  TYT ++ G    G +K A+ +   + + G L
Sbjct: 604 VSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKGAL 644


>gi|297836398|ref|XP_002886081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331921|gb|EFH62340.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 743

 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 109/377 (28%), Positives = 182/377 (48%), Gaps = 7/377 (1%)

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
           R    L+  MKSL L P   T+  + +     G +  A K+   M   G + +  + N  
Sbjct: 327 REGLELMDVMKSLKLQPDVVTYNTLIDGCFELGLSLEAKKLMEQMENDGVKPNQVTHNIS 386

Query: 180 LDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           L  LCKE+K E+     K  V    F  D+++Y+ +   +  V   + ALE+++EM  +G
Sbjct: 387 LKWLCKEEKREEVTRKVKELVEMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKG 446

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
           +  N  T N +L    +  +++EA        KR   +D VTY T++ G+    ++++A 
Sbjct: 447 IKMNTITLNTILDALCKERKVDEAHNLLDSAHKRGYIVDEVTYGTLIMGYFREEKVEKAF 506

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
            ++D M    + P+V T+N++I  LC     E A+  F+E+   G +P+  T+N +I G 
Sbjct: 507 EMWDEMKRIKITPTVTTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDCTFNSIILGY 566

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
           C  G +E+A EF         +P+  T NIL+   C  G  E+ L  F  + +   +  +
Sbjct: 567 CKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLITEREVDTV 626

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
            TYN +IS+    KK   L  A  LL EM ++   P +FT+N ++  L+  G    A E+
Sbjct: 627 -TYNTMISAFCKDKK---LKEAYDLLSEMEEKRLEPDRFTYNSIITSLMEDGKLSEADEL 682

Query: 478 L-RLQSRCGRLPRQFKL 493
           L +   + G + R   L
Sbjct: 683 LKKFSGKFGSMKRNLHL 699



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 173/351 (49%), Gaps = 15/351 (4%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           +L+H    LS  P++  F I    Y+ AGK   A+++F  M     + +L + NT+L  L
Sbjct: 117 SLLHPNLHLSPPPSKALFDIALSAYLHAGKPHVALQVFQKMIRLKLKPNLLTCNTLLIGL 176

Query: 184 CKEKKVEKAYNLFKVFRGKFKA----DVISYNVIANGWCLVKRTNKALEVLKEMVDR-GL 238
            +        +  +VF    K     DV ++NV+ NG+CL  +   AL +L+ MV    +
Sbjct: 177 VRYPSSFSIASAREVFDDMVKIGVSLDVKTFNVLVNGYCLEGKLEDALGMLERMVSEFNV 236

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
           NP+  TYN +LK   + G++ +     L+MK+     + VTY  +V+G+  +G +K A  
Sbjct: 237 NPDNVTYNTILKAMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCKLGSLKEAFQ 296

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
           + + M    +LP + TYN +I  +C   S+   + + + M      P+  TYN +I G  
Sbjct: 297 IVELMKQTNILPDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVVTYNTLIDGCF 356

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA---GEIERGL-ELFEKMGSGVCL 414
             G    A + + +M++D  +PN  T+NI +++ C      E+ R + EL E  G     
Sbjct: 357 ELGLSLEAKKLMEQMENDGVKPNQVTHNISLKWLCKEEKREEVTRKVKELVEMHGFS--- 413

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           P++ TY+ LI +     K  DL  A +++ EM  +G      T N +L+ L
Sbjct: 414 PDIVTYHTLIKAYL---KVGDLSGALEMMREMGQKGIKMNTITLNTILDAL 461



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 124/255 (48%), Gaps = 7/255 (2%)

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG---FGVVGEIKRA 296
           P+   ++I L  Y  AG+   A + F +M + K + +++T  T++ G   +     I  A
Sbjct: 129 PSKALFDIALSAYLHAGKPHVALQVFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSIASA 188

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK-GYMPNSTTYNVVIR 355
           R VFD MV  GV   V T+N ++   C +  +E+A+ + E MV +    P++ TYN +++
Sbjct: 189 REVFDDMVKIGVSLDVKTFNVLVNGYCLEGKLEDALGMLERMVSEFNVNPDNVTYNTILK 248

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
            +   G +    + +  MK +   PN  TYN L+  +C  G ++   ++ E M     LP
Sbjct: 249 AMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNILP 308

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
           +L TYNILI+ +     +  +    +L+  M      P   T+N +++G   +G    AK
Sbjct: 309 DLCTYNILINGVC---NAGSIREGLELMDVMKSLKLQPDVVTYNTLIDGCFELGLSLEAK 365

Query: 476 EILRLQSRCGRLPRQ 490
           +++      G  P Q
Sbjct: 366 KLMEQMENDGVKPNQ 380


>gi|162460542|ref|NP_001105869.1| pentatricopeptide repeat protein [Zea mays]
 gi|95931777|gb|ABF57644.1| pentatricopeptide repeat protein [Zea mays]
          Length = 886

 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 177/365 (48%), Gaps = 4/365 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           LV  M+   +      +  +   Y       + + +F  + E G + ++ S+  +++L  
Sbjct: 378 LVREMEEDGIDAPIDVYHSMMHGYTVVQDEKKCLIVFERLKECGFKPTIISYGCLINLYV 437

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  KV KA  + K       K +  +Y+++ NG+  +     A  + ++M+  GL P+  
Sbjct: 438 KVGKVPKAIAISKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRA 497

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            YN++++ + + G ++ A R F  M+K + +    T+  I+ GF V G++KRA +  D M
Sbjct: 498 IYNLLVEAFCKMGNMDRAIRIFERMQKERMQPSNRTFRPIIEGFAVAGDMKRAFDTLDLM 557

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G  P+V TYNA+I  L +K  VE A+ V ++M   G  PN  TY +++RG   +G++
Sbjct: 558 RRSGCAPTVMTYNALIHGLVRKHQVEKAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDI 617

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
            +A E+  ++K+   + +V  Y  L+R  C +G ++  L +  +M       N   YNIL
Sbjct: 618 GKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNIL 677

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I     R    D+  A  LL +M + G  P   TF   +N     G+   A+ +++  + 
Sbjct: 678 IDGWARR---GDVWEAADLLKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMAD 734

Query: 484 CGRLP 488
            G  P
Sbjct: 735 VGLKP 739



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 161/331 (48%), Gaps = 1/331 (0%)

Query: 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           H+  ++   I+    L D+   +++   M    L P +  + ++ E +   G  DRA++I
Sbjct: 459 HNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRI 518

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCL 219
           F  M +   + S  +F  I++       +++A++   + R    A  V++YN + +G   
Sbjct: 519 FERMQKERMQPSNRTFRPIIEGFAVAGDMKRAFDTLDLMRRSGCAPTVMTYNALIHGLVR 578

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
             +  KA+ VL +M   G+ PN  TY I+++GY  +G I +A+ +F ++K+   ++DV  
Sbjct: 579 KHQVEKAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYI 638

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y T++      G ++ A  V   M    +  +   YN +I    ++  V  A  + ++M 
Sbjct: 639 YETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLLKQMK 698

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             G  PN  T+   I   C  G+M+RA   +  M D   +PNV+T+  LI+ +      +
Sbjct: 699 EDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWARVSLPD 758

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
           R L+ FE+M S    P+   Y+ L++S+  R
Sbjct: 759 RALKCFEEMKSAGLKPDEAAYHCLVTSLLSR 789



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 166/349 (47%), Gaps = 4/349 (1%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M++  + P    F  +   Y  AG    A+     M   G   ++ +++ ++    K   
Sbjct: 277 MRARGIEPNAFVFTSLVHAYAVAGDMRGALSCVEEMKSEGIEMTVVTYSILISGYGKTND 336

Query: 189 VEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
            + A NLFK  + K    + I Y+ I +  C     ++A E+++EM + G++  +  Y+ 
Sbjct: 337 AQSADNLFKEAKTKLDNLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHS 396

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ GY      ++    F  +K+   +  +++Y  +++ +  VG++ +A  +   M + G
Sbjct: 397 MMHGYTVVQDEKKCLIVFERLKECGFKPTIISYGCLINLYVKVGKVPKAIAISKEMESHG 456

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           +  +  TY+ +I          NA  +FE+M+  G  P+   YN+++   C  G M+RA+
Sbjct: 457 IKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAI 516

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
               RM+ +  +P+ +T+  +I  F  AG+++R  +  + M    C P + TYN LI  +
Sbjct: 517 RIFERMQKERMQPSNRTFRPIIEGFAVAGDMKRAFDTLDLMRRSGCAPTVMTYNALIHGL 576

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKE 476
            VRK   +  V+  +L +M   G  P + T+  ++ G    G+ G A E
Sbjct: 577 -VRKHQVEKAVS--VLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFE 622



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/381 (22%), Positives = 147/381 (38%), Gaps = 55/381 (14%)

Query: 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE-KKVEKAYN-LFKVFRGKFK 204
           R+V AG    A   +    E  CR+    F  +L+   ++ + V  A+  + K  R +F 
Sbjct: 200 RWVEAGVVREASSPWHKGREDACRE----FRRVLESRPEDWQAVVSAFERIPKPSRREFG 255

Query: 205 ADVISYNVIANGWCLVKRTNK--ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262
             V+ Y          KR +K  A    + M  RG+ PN   +  ++  Y  AG +  A 
Sbjct: 256 LMVVYY---------AKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVAGDMRGAL 306

Query: 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD--------------------- 301
               EMK    E+ VVTY+ ++ G+G   + + A N+F                      
Sbjct: 307 SCVEEMKSEGIEMTVVTYSILISGYGKTNDAQSADNLFKEAKTKLDNLNGIIYSNIIHAH 366

Query: 302 --------------GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
                          M   G+   +  Y++M+         +  ++VFE +   G+ P  
Sbjct: 367 CQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVVQDEKKCLIVFERLKECGFKPTI 426

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
            +Y  +I      G++ +A+     M+    + N +TY++LI  F    +      +FE 
Sbjct: 427 ISYGCLINLYVKVGKVPKAIAISKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFED 486

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467
           M      P+   YN+L+ +     K  ++  A ++   M      P   TF  ++ G  +
Sbjct: 487 MIKSGLQPDRAIYNLLVEAFC---KMGNMDRAIRIFERMQKERMQPSNRTFRPIIEGFAV 543

Query: 468 IGNQGLAKEILRLQSRCGRLP 488
            G+   A + L L  R G  P
Sbjct: 544 AGDMKRAFDTLDLMRRSGCAP 564


>gi|356523400|ref|XP_003530328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Glycine max]
          Length = 664

 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 122/452 (26%), Positives = 206/452 (45%), Gaps = 46/452 (10%)

Query: 45  SLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALK-------ALHFFNILSYHP 97
           SL+L    P +L   L    L+  P     + +    HAL+       AL  F  L+   
Sbjct: 8   SLLLKHRKPSSLPLVLATRPLNPPPSSASLLHESHVAHALRREPNVLYALQHFQYLTNTL 67

Query: 98  TYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRA 157
            + H+P ++   I+   R  +   +  ++H+MK   +  +Q +F  +   Y ++G  DRA
Sbjct: 68  AFKHTPLTYHVMIEKLGRNSELDALHYILHQMKIERIPCSQDSFICVLNSYKNSGLGDRA 127

Query: 158 VKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGW 217
           +K+F  + E GC+ ++  +N +LD L  E       N F +                   
Sbjct: 128 LKMFYRIKEFGCKPTVKIYNHLLDALLGESG-----NKFHMIGA---------------- 166

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
                      V + M   G+ PN+ TYN++LK   + G+++ A +  +EM KR C  D 
Sbjct: 167 -----------VYENMRGEGMEPNVFTYNVLLKALCKNGKLDGACKLLVEMSKRGCVPDG 215

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           V+YTT+V      G ++ AR V       GV   V+  NA+I  LC++  V     + +E
Sbjct: 216 VSYTTVVAAMCEDGRVEEAREVARRFGAEGV---VSVCNALICGLCREGRVGEVFGLMDE 272

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           MVG G  PN  +Y+ VI  L   GE+E AL  +G+M    C PNV T++ L++ +   G 
Sbjct: 273 MVGNGVDPNVVSYSSVISWLSDVGEVELALAVLGKMIRRGCRPNVHTFSSLMKGYFLGGR 332

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK-SDDLLVAGKLLIEMVDRGFMPRKF 456
           +  G+ L+  M      PN+  YN L++ +      ++ + V G++  +   R   P   
Sbjct: 333 VGEGVGLWRVMVLEGVRPNVVVYNTLLNGLCCSGNLAEAVDVCGRMEKDCFCR---PNVT 389

Query: 457 TFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           T++ +++G +  G+   A E+      CG  P
Sbjct: 390 TYSTLVHGFVKAGDLQGASEVWNKMVNCGVRP 421



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 113/456 (24%), Positives = 191/456 (41%), Gaps = 80/456 (17%)

Query: 79  LWNHALKALHFFNILSYHPTYAHSPSSFDHAID--LAARLRDYRTVWTLVHRMKSLSLGP 136
           L + ALK  +        PT       ++H +D  L      +  +  +   M+   + P
Sbjct: 123 LGDRALKMFYRIKEFGCKPTV----KIYNHLLDALLGESGNKFHMIGAVYENMRGEGMEP 178

Query: 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF 196
              T+ ++ +     GK D A K+ + M + GC     S+ T++  +C++ +VE+A  + 
Sbjct: 179 NVFTYNVLLKALCKNGKLDGACKLLVEMSKRGCVPDGVSYTTVVAAMCEDGRVEEAREVA 238

Query: 197 KVFRGK---------------------------------FKADVISYNVIANGWCLVKRT 223
           + F  +                                    +V+SY+ + +    V   
Sbjct: 239 RRFGAEGVVSVCNALICGLCREGRVGEVFGLMDEMVGNGVDPNVVSYSSVISWLSDVGEV 298

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA---WRFFLEMKKRK-------- 272
             AL VL +M+ RG  PN+ T++ ++KGYF  G++ E    WR  +    R         
Sbjct: 299 ELALAVLGKMIRRGCRPNVHTFSSLMKGYFLGGRVGEGVGLWRVMVLEGVRPNVVVYNTL 358

Query: 273 -------------------------CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
                                    C  +V TY+T+VHGF   G+++ A  V++ MVN G
Sbjct: 359 LNGLCCSGNLAEAVDVCGRMEKDCFCRPNVTTYSTLVHGFVKAGDLQGASEVWNKMVNCG 418

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           V P+V  Y +M+ VLCK    + A  + + M   G  P   T+N  I+GLC  G +  A+
Sbjct: 419 VRPNVVVYTSMVDVLCKNSMFDQAYRLIDNMATDGCPPTVVTFNTFIKGLCCGGRVLWAM 478

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
             V +M+   C P+ +TYN L+       E++   EL  ++       NL TYN ++   
Sbjct: 479 RVVDQMQRYGCLPDTRTYNELLDGLFSVNELKEACELIRELEERKVELNLVTYNTVMYGF 538

Query: 428 FVRKKSDDLL-VAGKLLIEMVDRGFMPRKFTFNRVL 462
               K + +L V G++L+     G  P   T N V+
Sbjct: 539 SSHGKEEWVLQVLGRMLVN----GVKPDAITVNVVI 570



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/369 (22%), Positives = 167/369 (45%), Gaps = 14/369 (3%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S+   I   + + +      ++ +M      P   TF+ + + Y   G+    V ++  M
Sbjct: 284 SYSSVISWLSDVGEVELALAVLGKMIRRGCRPNVHTFSSLMKGYFLGGRVGEGVGLWRVM 343

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKAD------VISYNVIANGWC 218
              G R ++  +NT+L+ LC    + +A ++     G+ + D      V +Y+ + +G+ 
Sbjct: 344 VLEGVRPNVVVYNTLLNGLCCSGNLAEAVDVC----GRMEKDCFCRPNVTTYSTLVHGFV 399

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
                  A EV  +MV+ G+ PN+  Y  ++    +    ++A+R    M    C   VV
Sbjct: 400 KAGDLQGASEVWNKMVNCGVRPNVVVYTSMVDVLCKNSMFDQAYRLIDNMATDGCPPTVV 459

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           T+ T + G    G +  A  V D M   G LP   TYN ++  L   + ++ A  +  E+
Sbjct: 460 TFNTFIKGLCCGGRVLWAMRVVDQMQRYGCLPDTRTYNELLDGLFSVNELKEACELIREL 519

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
             +    N  TYN V+ G    G+ E  L+ +GRM  +  +P+  T N++I  +   G++
Sbjct: 520 EERKVELNLVTYNTVMYGFSSHGKEEWVLQVLGRMLVNGVKPDAITVNVVIYAYSKLGKV 579

Query: 399 ERGLELFEKMGSGVCL-PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
              ++  +++ +G  L P++  +  L+  +      ++ +V    L +M+++G  P   T
Sbjct: 580 RTAIQFLDRITAGKELCPDIIAHTSLLWGICNSLGIEEAIV---YLNKMLNKGIFPNIAT 636

Query: 458 FNRVLNGLL 466
           ++ ++ G  
Sbjct: 637 WDVLVRGFF 645



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/240 (22%), Positives = 117/240 (48%), Gaps = 4/240 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           +   +D+  +   +   + L+  M +    PT  TF    +     G+   A+++   M 
Sbjct: 426 YTSMVDVLCKNSMFDQAYRLIDNMATDGCPPTVVTFNTFIKGLCCGGRVLWAMRVVDQMQ 485

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTN 224
            +GC     ++N +LD L    ++++A  L +     K + ++++YN +  G+    +  
Sbjct: 486 RYGCLPDTRTYNELLDGLFSVNELKEACELIRELEERKVELNLVTYNTVMYGFSSHGKEE 545

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF--LEMKKRKCEIDVVTYTT 282
             L+VL  M+  G+ P+  T N+V+  Y + G++  A +F   +   K  C  D++ +T+
Sbjct: 546 WVLQVLGRMLVNGVKPDAITVNVVIYAYSKLGKVRTAIQFLDRITAGKELCP-DIIAHTS 604

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++ G      I+ A    + M+N G+ P++AT++ +++   KK      I + ++++GKG
Sbjct: 605 LLWGICNSLGIEEAIVYLNKMLNKGIFPNIATWDVLVRGFFKKLGHMGPIRILDDILGKG 664


>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
          Length = 700

 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 110/453 (24%), Positives = 202/453 (44%), Gaps = 37/453 (8%)

Query: 73  DQIIK--RLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMK 130
           D ++K   L   A  AL FF        Y H+  ++   ID+  R + +  + +L+ +M+
Sbjct: 184 DAVVKVLNLQTDAQNALRFFQWADKQEGYDHNTDAYFTMIDILGRAKMFTELQSLLQKMQ 243

Query: 131 SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL--NSFNTILDLLCKEKK 188
           +     T+         Y  +G+   +++ F  M E G    L   ++N++L  L K KK
Sbjct: 244 TQGREITRSMLHSFVMSYGRSGRFKESLEAFNLMKEMGYEPGLIDTAYNSVLVSLVKNKK 303

Query: 189 VEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           ++ A NLF ++       + ++Y  +   + L ++   A+++L +M+     P++ TY I
Sbjct: 304 LDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTI 363

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           V+    +   IE+A+    +M++  CE ++ TY  ++ G   V   + A  +   M  GG
Sbjct: 364 VISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLMEQGG 423

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           V P++ TY  +   LCK   ++ A  +F E + +G  PN  TYN ++ G C    +  A+
Sbjct: 424 VPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEAM 483

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI--- 424
           + +  M  ++C P+  TY  LI+      ++   L + ++M +     N DT NIL    
Sbjct: 484 DILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNILARGL 543

Query: 425 --------SSMFVRKKSD---------------------DLLVAGKLLIEMVDRGFMPRK 455
                   +S+F R+  D                     ++  A  LL EM+++G+ P  
Sbjct: 544 ARVGNHKDASIFYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYSPNL 603

Query: 456 FTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            T+N ++ G    G    A  +L      G  P
Sbjct: 604 TTYNTMIKGFCRQGRLDDADAMLNFMIENGIGP 636



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 143/317 (45%), Gaps = 36/317 (11%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M   +  P   T+ I+          ++A  +   M E+GC  ++ ++N ++  LC
Sbjct: 345 LLDDMIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLC 404

Query: 185 KEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
             ++ E+A  L  +  +G    ++ +Y ++ +G C ++R ++A E+  E + RGL PN  
Sbjct: 405 AVRRPEEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRV 464

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF---------------- 287
           TYN +L GY R  ++ EA     EM +  C  D VTYTT++ G                 
Sbjct: 465 TYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEM 524

Query: 288 -------------------GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
                                VG  K A   +  M + G   S + Y   I  L     +
Sbjct: 525 ENKGYDVNFDTLNILARGLARVGNHKDASIFYRRMKDRGFAYSASDYYLAIHCLSTAGEM 584

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           E A  +  EM+ KGY PN TTYN +I+G C  G ++ A   +  M ++   P+  +YNIL
Sbjct: 585 EEAQALLYEMINKGYSPNLTTYNTMIKGFCRQGRLDDADAMLNFMIENGIGPDTGSYNIL 644

Query: 389 IRYFCDAGEIERGLELF 405
           I+ F + G  +   +L+
Sbjct: 645 IKEFHNQGRTQDADQLY 661



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 94/214 (43%), Gaps = 1/214 (0%)

Query: 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
           L P + T+  +   Y    +   A+ I   MH++ C     ++ T++  L +  ++  A 
Sbjct: 459 LKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDAL 518

Query: 194 NLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
            +      K +  +  + N++A G   V     A    + M DRG   + + Y + +   
Sbjct: 519 RMHDEMENKGYDVNFDTLNILARGLARVGNHKDASIFYRRMKDRGFAYSASDYYLAIHCL 578

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
             AG++EEA     EM  +    ++ TY T++ GF   G +  A  + + M+  G+ P  
Sbjct: 579 STAGEMEEAQALLYEMINKGYSPNLTTYNTMIKGFCRQGRLDDADAMLNFMIENGIGPDT 638

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
            +YN +I+    +   ++A  ++   + +G + N
Sbjct: 639 GSYNILIKEFHNQGRTQDADQLYATALERGVVLN 672


>gi|222624423|gb|EEE58555.1| hypothetical protein OsJ_09859 [Oryza sativa Japonica Group]
          Length = 858

 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 120/502 (23%), Positives = 223/502 (44%), Gaps = 27/502 (5%)

Query: 8   PPKNHLHFF-CIYRGLSPLTTTSPAP---------LPPAAADPAALASLILTSTDPRTLT 57
           PPK     F  + +   P    +PAP         +  + AD  A+  ++  +  P  + 
Sbjct: 2   PPKPERRLFQYVSKPRRPAREPAPAPEVCGGGGEEVVASDADADAVYRMVTAAPTPSAME 61

Query: 58  QTLHCPSLHWTPQLVDQIIKRL-WNHALKALHFFNILSYHPTYAHSPSSF--DHAIDLAA 114
             L    +  +  L+D +++R  + H         +      +  +PS F  D A+ +  
Sbjct: 62  SALSASGVAISAPLLDLVLRRFRFAHGDPLRALSLLSLALDRHGVAPSPFALDTALYVLG 121

Query: 115 RLRDYRTVWTLVHRMKSLSLGP-TQKTFAIIAERYVSAGKADRAVKIFLSMHE----HGC 169
           R R +  +W L+   + L     T +T  ++  R          V  F  +       G 
Sbjct: 122 RARRFAHMWDLLRSSRRLVPDAVTPRTAMVVLGRVAKVCSVRETVDSFRRLSRMLRGRGD 181

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEV 229
            Q    FN +L  LC+EK +  A N++   + +FK +  ++N++ +GW   K    A   
Sbjct: 182 DQEGQLFNALLRTLCQEKSMSDARNVYHALKYEFKVNRQTFNILLSGW---KSAEDAEAF 238

Query: 230 LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289
           + EM + G+ P+L TYN ++  + +   +E A++   EM+++    DV+TYT+++ G G+
Sbjct: 239 VAEMRELGVEPDLVTYNSLIDCHCKNRGVENAYKLLDEMREKDISPDVITYTSLIGGLGL 298

Query: 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
           +G+  +A+++   M   G  P V  YN  I+       + +A  + EEM  KG MPN+TT
Sbjct: 299 IGQPDKAKHLLKEMHELGCYPDVPAYNTAIRNFVIAKRLGDAFALMEEMASKGLMPNATT 358

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
           YN+  R      ++  A +   RM+ + C PN Q+   ++R     G + + LEL+  M 
Sbjct: 359 YNLFFRCYYWAYDIGSAWQLYERMRSEGCFPNTQSCMFIVRLCHRHGRVAQALELWSDMV 418

Query: 410 SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
           +          ++L   +    K D+   A +   +M++ G  P    F R+   L+ + 
Sbjct: 419 NNGFGSFTLVSDVLFDLLCDEGKLDE---AERCFHQMIELGQKPSNVAFRRI-KILMQLA 474

Query: 470 NQGLAKEILRLQSRCGRLPRQF 491
           N+   + I RL ++  +  R+ 
Sbjct: 475 NR--EESIARLTAQMAQFGREI 494


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 112/421 (26%), Positives = 179/421 (42%), Gaps = 74/421 (17%)

Query: 117 RDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSF 176
           RD   V  L+  M+ L L P   TF I       AGK D A +IF  M + GC   L ++
Sbjct: 241 RDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTY 300

Query: 177 NTILDLLCKEKKVEKAYNL-------------------------------FKVFRGKFKA 205
             ++D LC   ++E A  L                               FK F  + +A
Sbjct: 301 TVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEA 360

Query: 206 -----DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
                DV+++ ++ +  C  +  ++A      M  +G+ PNL TYN ++ G  RAG+IE+
Sbjct: 361 DGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIED 420

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE---------------------------- 292
           A +    M+    +    TY T +  FG  GE                            
Sbjct: 421 ALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLY 480

Query: 293 -------IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
                  ++ A+ +F+G+   G+ P   TYN M++   K   V+ A+ +  EM+  G  P
Sbjct: 481 SLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEP 540

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           +    N +I  L   G ++ A +   RMKD +  P V TYN L+      G +++ +ELF
Sbjct: 541 DVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELF 600

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           E M    C PN  ++N L+       K+D++ +A K+  +M      P   T+N V+ GL
Sbjct: 601 ESMIXKKCSPNTISFNTLLDCFC---KNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGL 657

Query: 466 L 466
           +
Sbjct: 658 I 658



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 147/296 (49%), Gaps = 1/296 (0%)

Query: 130  KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV 189
            K L + PT  ++  +    +     ++A  +F  M   GC     +FN +L +  K  K+
Sbjct: 780  KKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKI 839

Query: 190  EKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
             + + L+K +   + K D I+YN++ +        +KAL+   ++V     P   TY  +
Sbjct: 840  TELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPL 899

Query: 249  LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
            + G  + G++EEA R F EM    C+ +   +  +++G+G +G+ + A  +F  MVN G+
Sbjct: 900  IDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGI 959

Query: 309  LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
             P + +Y  ++  LC    V+ A+  F E+   G  P+   YN +I GL  +  ME AL 
Sbjct: 960  RPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALA 1019

Query: 369  FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
                M++    P++ TYN L+     AG +E+   ++E++      P++ TYN LI
Sbjct: 1020 LYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALI 1075



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 156/315 (49%), Gaps = 5/315 (1%)

Query: 179  ILDLLCKEKKVEKAYNLFKVFRGKF--KADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
            ++ +LCK K+   AY +F  F  K      + SYN +      V  T KA ++ K+M + 
Sbjct: 758  LVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNV 817

Query: 237  GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
            G  P+  T+N++L  + ++G+I E +  + EM  R+C+ D +TY  ++        + +A
Sbjct: 818  GCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKA 877

Query: 297  RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
             + F  +V+    P+  TY  +I  L K   +E A+ +FEEM   G  PN   +N++I G
Sbjct: 878  LDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILING 937

Query: 357  LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
                G+ E A +   RM ++   P++++Y IL+   C AG ++  L  F ++ S    P+
Sbjct: 938  YGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPD 997

Query: 417  LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKE 476
               YN +I+ +    KS  +  A  L  EM +RG +P  +T+N ++  L L G    AK 
Sbjct: 998  FIAYNRIINGL---GKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKR 1054

Query: 477  ILRLQSRCGRLPRQF 491
            +       G  P  F
Sbjct: 1055 MYEELQLAGLEPDVF 1069



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 172/370 (46%), Gaps = 4/370 (1%)

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
           R + T++++M+         ++  +    + +G    A++++  M   G + SL +++ +
Sbjct: 174 RQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSAL 233

Query: 180 LDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           +  L K++  E    L K       + +V ++ +         + ++A E+ + M D G 
Sbjct: 234 MVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGC 293

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
            P+L TY +++     AGQ+E A   F++MK    + D V Y T++  F   G++   + 
Sbjct: 294 GPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKE 353

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
            +  M   G +P V T+  ++ VLCK    + A   F+ M  +G +PN  TYN +I GL 
Sbjct: 354 FWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLL 413

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLD 418
             G +E AL+ +  M+    +P   TY   I YF  +GE  + +E FEKM +   +PN+ 
Sbjct: 414 RAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIV 473

Query: 419 TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
             N   +S++   +   L  A  +   + + G  P   T+N ++     +G    A  +L
Sbjct: 474 ACN---ASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLL 530

Query: 479 RLQSRCGRLP 488
               R G  P
Sbjct: 531 SEMIRNGCEP 540



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 162/365 (44%), Gaps = 8/365 (2%)

Query: 116 LRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS 175
           L  ++  W+   +M++    P   TF I+ +    A   D A   F  M + G   +L++
Sbjct: 348 LDTFKEFWS---QMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHT 404

Query: 176 FNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           +NT++  L +  ++E A  L         +    +Y    + +     T KA+E  ++M 
Sbjct: 405 YNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMK 464

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
            +G+ PN+   N  L      G++ EA   F  +++     D VTY  ++  +  VG++ 
Sbjct: 465 AKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVD 524

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
            A N+   M+  G  P V   N++I  L K   V+ A  +F+ M      P   TYN ++
Sbjct: 525 EAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLL 584

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
            GL   G +++A+E    M   +C PN  ++N L+  FC   E+E  L++F KM    C 
Sbjct: 585 SGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCK 644

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           P++ TYN +I  +    K +            + +   P   T   +L GL+  G  G A
Sbjct: 645 PDVLTYNTVIYGLIKENKVNHAF----WFFHQLKKSMHPDHVTICTLLPGLVKCGQIGDA 700

Query: 475 KEILR 479
             I R
Sbjct: 701 ISIAR 705



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 160/349 (45%), Gaps = 3/349 (0%)

Query: 75   IIKRLWNH--ALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSL 132
            +++ L  H   L A   F+  +     + + +S++  I     +      W L   MK++
Sbjct: 758  LVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNV 817

Query: 133  SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
               P   TF ++   +  +GK     +++  M    C+    ++N ++  L K   ++KA
Sbjct: 818  GCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKA 877

Query: 193  YNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
             + F  +    F+    +Y  + +G   V R  +A+ + +EM D G  PN   +NI++ G
Sbjct: 878  LDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILING 937

Query: 252  YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
            Y + G  E A + F  M       D+ +YT +V    + G +  A   F+ + + G+ P 
Sbjct: 938  YGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPD 997

Query: 312  VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
               YN +I  L K   +E A+ ++ EM  +G +P+  TYN ++  L   G +E+A     
Sbjct: 998  FIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYE 1057

Query: 372  RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
             ++    EP+V TYN LIR +  +   E    +++ M    C PN+ TY
Sbjct: 1058 ELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTY 1106



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/419 (21%), Positives = 161/419 (38%), Gaps = 75/419 (17%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           W +  RMK + L PT  T+  +       G+  +A+++F SM    C  +  SFNT+LD 
Sbjct: 562 WQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDC 621

Query: 183 LCK-----------------------------------EKKVEKAYNLFKVFRGKFKADV 207
            CK                                   E KV  A+  F   +     D 
Sbjct: 622 FCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKKSMHPDH 681

Query: 208 ISYNVIANGWCLVKRTNKALEVLKE-MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           ++   +  G     +   A+ + ++ M       N + +  ++ G     ++++A  F  
Sbjct: 682 VTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEMDKAIIFAE 741

Query: 267 EM------------------------------------KKRKCEIDVVTYTTIVHGFGVV 290
           E+                                    KK      + +Y  ++     V
Sbjct: 742 ELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEV 801

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
              ++A ++F  M N G  P   T+N ++ V  K   +     +++EM+ +   P++ TY
Sbjct: 802 HYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITY 861

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           N+VI  L  +  +++AL+F   +   +  P  +TY  LI      G +E  + LFE+M  
Sbjct: 862 NIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSD 921

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
             C PN   +NILI+      K  D   A +L   MV+ G  P   ++  +++ L L G
Sbjct: 922 YGCKPNCAIFNILINGY---GKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAG 977



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 114/237 (48%), Gaps = 3/237 (1%)

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           V + M  + +  +L TY  + K     G + +      +M+K    ++  +Y  ++H   
Sbjct: 144 VFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLI 203

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G    A  V+  MV+ G+ PS+ TY+A++  L KK   E  +++ +EM   G  PN  
Sbjct: 204 QSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVY 263

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           T+ + IR L   G+++ A E   RM D+ C P++ TY +LI   C+AG++E   ELF KM
Sbjct: 264 TFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKM 323

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            +    P+   Y  L+          DL    +   +M   G+MP   TF  +++ L
Sbjct: 324 KANGHKPDQVIYITLLDKF---NDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVL 377



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 153/338 (45%), Gaps = 5/338 (1%)

Query: 156 RAVKIFLSMHEH-GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF-KADVISYNVI 213
           RA+  F S+ E      +  + N +L+ L    KVE    +F+  + K  + D+ +Y  I
Sbjct: 104 RALSYFYSISEFPTVLHTTETCNFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTI 163

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
                +     +   VL +M   G   N  +YN ++    ++G   EA   +  M     
Sbjct: 164 FKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGL 223

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
           +  + TY+ ++   G   + +    +   M + G+ P+V T+   I+VL +   ++ A  
Sbjct: 224 KPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYE 283

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           +F  M  +G  P+  TY V+I  LC+ G++E A E   +MK +  +P+   Y  L+  F 
Sbjct: 284 IFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFN 343

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
           D G+++   E + +M +   +P++ T+ IL+    V  K+ D   A      M  +G +P
Sbjct: 344 DFGDLDTFKEFWSQMEADGYMPDVVTFTILVD---VLCKARDFDEAFATFDVMRKQGILP 400

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
              T+N ++ GLL  G    A ++L      G  P  +
Sbjct: 401 NLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAY 438



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 93/242 (38%), Gaps = 43/242 (17%)

Query: 81   NHALKALHFFNIL---SYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPT 137
            N+  KAL FF  L    + PT    P ++   ID  A++        L   M      P 
Sbjct: 872  NNLDKALDFFYDLVSSDFRPT----PRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPN 927

Query: 138  QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK 197
               F I+   Y   G  + A ++F  M   G R  L S+  ++D LC   +V++A   F 
Sbjct: 928  CAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFN 987

Query: 198  VFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG------------------- 237
              +      D I+YN I NG    +R  +AL +  EM +RG                   
Sbjct: 988  ELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAG 1047

Query: 238  ----------------LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
                            L P++ TYN +++GY  +   E A+  +  M    C  ++ TY 
Sbjct: 1048 MVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYA 1107

Query: 282  TI 283
             +
Sbjct: 1108 QL 1109


>gi|224107983|ref|XP_002314677.1| predicted protein [Populus trichocarpa]
 gi|222863717|gb|EEF00848.1| predicted protein [Populus trichocarpa]
          Length = 481

 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 191/411 (46%), Gaps = 3/411 (0%)

Query: 55  TLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAA 114
            + + L    ++ T  LV Q+++R  N  + AL  F        Y H+P  +D  +D+  
Sbjct: 51  AVVKALDESGINATNDLVSQLLERFSNQWITALGVFIWAKNQTGYVHTPRLYDLVVDILG 110

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           + + +  +W +V+ M  L+   +  T +I+  R  S+G     + +   + ++  ++   
Sbjct: 111 KCKKFGIMWKVVNEMNELNGQVSFSTMSIVVRRLASSGMYKDVIDVLRGLEKYRVKKDTV 170

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           + N ++  L K+   + AY++F  F+     D  S+N++ +G+C  +  + A + ++EM 
Sbjct: 171 ALNMVMHALAKQGGAKDAYSVFLEFKDSITLDSHSFNILIHGYCEARMLDDARKTMEEME 230

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
             G  P+ ++Y   +K Y +            EM ++ CE DV+ Y+  +   G   +I 
Sbjct: 231 KHGFRPDASSYTCFIKAYCKQKDFRNVEVILNEMGEKGCEPDVIAYSIYIRALGKARKIN 290

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
            A  V++ M      P    ++ +I VL +   + +A  VFE+M   G   +  TYN +I
Sbjct: 291 EALEVYEKMNKNSCKPDAKFFSTLIYVLGRSGRLNDAWYVFEDMENHGVSRDLWTYNAMI 350

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
              C   +   AL+ + RM+ + C+P+++TY  L++  C   +++    L   M +    
Sbjct: 351 YHACANRQGNSALKLLERMEVNSCKPDLETYQPLLKMCCKMKDMKVLKFLLSHMFNNNVR 410

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            +L TY +LI  +    +S  L  A     + V  G +P+  T+  +L  L
Sbjct: 411 IDLSTYALLIREL---AESGKLEHACFFFQDAVLNGIVPKDRTYEILLKEL 458



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 119/267 (44%), Gaps = 6/267 (2%)

Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           +HS +   H    A  L D R     +  M+     P   ++    + Y    K  R V+
Sbjct: 203 SHSFNILIHGYCEARMLDDARKT---MEEMEKHGFRPDASSYTCFIKAYCKQ-KDFRNVE 258

Query: 160 IFLS-MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGW 217
           + L+ M E GC   + +++  +  L K +K+ +A  ++ K+ +   K D   ++ +    
Sbjct: 259 VILNEMGEKGCEPDVIAYSIYIRALGKARKINEALEVYEKMNKNSCKPDAKFFSTLIYVL 318

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
               R N A  V ++M + G++ +L TYN ++       Q   A +    M+   C+ D+
Sbjct: 319 GRSGRLNDAWYVFEDMENHGVSRDLWTYNAMIYHACANRQGNSALKLLERMEVNSCKPDL 378

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
            TY  ++     + ++K  + +   M N  V   ++TY  +I+ L +   +E+A   F++
Sbjct: 379 ETYQPLLKMCCKMKDMKVLKFLLSHMFNNNVRIDLSTYALLIRELAESGKLEHACFFFQD 438

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEME 364
            V  G +P   TY ++++ L     +E
Sbjct: 439 AVLNGIVPKDRTYEILLKELGQNNMVE 465


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 105/375 (28%), Positives = 183/375 (48%), Gaps = 7/375 (1%)

Query: 81  NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKT 140
           N+ L+A   F+ +  H   +    SF   I +++R             MK+  L P    
Sbjct: 304 NNFLEAKDIFSDM-LHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVI 362

Query: 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--V 198
           + I+   Y   G    A++I   M E GC   + ++NTIL+ LCK+K +  A  LF   V
Sbjct: 363 YTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMV 422

Query: 199 FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
            RG    D  ++  + +G C      KAL +   M  + + P++ TYNI++ G+ +  ++
Sbjct: 423 ERG-VVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEM 481

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           E+A   + EM  RK   + ++Y  +V+G+  +G +  A  ++D M+  G+ P++ T N +
Sbjct: 482 EKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTV 541

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           I+  C+   +  A     +M+ +G  P+S TYN +I G      M++A   + +M+    
Sbjct: 542 IKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGL 601

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
           +P+V TYN+++  FC  G ++    +  KM      P+  TY  LI+        D+L  
Sbjct: 602 QPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYV---SQDNLKE 658

Query: 439 AGKLLIEMVDRGFMP 453
           A +   EM+ RGF+P
Sbjct: 659 AFRFHDEMLQRGFVP 673



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 172/344 (50%), Gaps = 12/344 (3%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KV 198
           T+  +   Y   G    A ++  SM   G + +L ++N +++ LCK+ +  +A  +F ++
Sbjct: 222 TYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEM 281

Query: 199 FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
                  D  +YN +    C      +A ++  +M+ RG++P+L +++ ++    R G +
Sbjct: 282 LSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHL 341

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           ++A  +F +MK      D V YT +++G+   G +  A  + D M+  G    V  YN +
Sbjct: 342 DQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTI 401

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           +  LCKK  + +A  +F+EMV +G +P+  T+  +I G C  G M +AL   G M     
Sbjct: 402 LNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNI 461

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM----FVRKKSD 434
           +P++ TYNILI  FC   E+E+  EL+ +M S    PN  +Y IL++      FV +   
Sbjct: 462 KPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSE--- 518

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
               A +L  EM+ +G  P   T N V+ G    G+   A E L
Sbjct: 519 ----AFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFL 558



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 167/346 (48%), Gaps = 6/346 (1%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           + +++ M    L PT  T+  +       G+  RA  +F  M   G      ++NT+L  
Sbjct: 240 FEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVE 299

Query: 183 LCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
            C+     +A ++F   + RG    D+IS++ +          ++AL   ++M   GL P
Sbjct: 300 SCRNNNFLEAKDIFSDMLHRG-VSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVP 358

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           +   Y I++ GY R G + EA     +M ++ C +DVV Y TI++G      +  A  +F
Sbjct: 359 DNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALF 418

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           D MV  GV+P   T+  +I   CK+ ++  A+ +F  M  K   P+  TYN++I G C T
Sbjct: 419 DEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKT 478

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
            EME+A E    M   +  PN  +Y IL+  +C+ G +     L+++M      P L T 
Sbjct: 479 TEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTC 538

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
           N +I       +S DL  A + L +M+  G  P   T+N ++NG +
Sbjct: 539 NTVIKGYC---RSGDLSKADEFLGKMISEGVGPDSITYNTLINGFV 581



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 172/354 (48%), Gaps = 4/354 (1%)

Query: 131 SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190
           S + G     F ++   YV A K +     F  +   G   S+N+ N++L  L K   V+
Sbjct: 108 SSTCGVDNLVFDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVD 167

Query: 191 KAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL 249
            A+ ++ ++ R   + +V + N++ N  C   + +     L +M  +G+  ++ TYN ++
Sbjct: 168 LAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLI 227

Query: 250 KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
             Y R G + EA+     M  +  +  + TY  +++G    G   RA+ VF+ M++ G+ 
Sbjct: 228 NAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLS 287

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           P   TYN ++   C+ ++   A  +F +M+ +G  P+  +++ +I      G +++AL +
Sbjct: 288 PDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMY 347

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
              MK     P+   Y ILI  +C  G +   LE+ +KM    C  ++  YN +++ +  
Sbjct: 348 FRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCK 407

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           +K   D   A  L  EMV+RG +P   TF  +++G    GN G A  +  + ++
Sbjct: 408 KKLLAD---ANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQ 458



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 121/259 (46%), Gaps = 36/259 (13%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L   M    + P   TF  +   +   G   +A+ +F  M +   +  + ++N ++D  C
Sbjct: 417 LFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFC 476

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  ++EKA  L+ ++   K   + ISY ++ NG+C +   ++A  +  EM+ +G+ P L 
Sbjct: 477 KTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLV 536

Query: 244 TYNIVLKGYFRAGQIEEAWRF---------------------------------FL--EM 268
           T N V+KGY R+G + +A  F                                 FL  +M
Sbjct: 537 TCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKM 596

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
           + +  + DVVTY  I++GF   G ++ A  +   M+  G+ P  +TY  +I     +D++
Sbjct: 597 ETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNL 656

Query: 329 ENAILVFEEMVGKGYMPNS 347
           + A    +EM+ +G++P+ 
Sbjct: 657 KEAFRFHDEMLQRGFVPDD 675



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 81/216 (37%), Gaps = 38/216 (17%)

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
           C +D + +  ++  +    ++    + F  +   G L S+   N+++  L K   V+ A 
Sbjct: 111 CGVDNLVFDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAW 170

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
            V+ E+   G   N  T N+++  LC   +++    F+  M+      ++ TYN LI  +
Sbjct: 171 EVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAY 230

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
           C  G +    E FE M S                                   M  +G  
Sbjct: 231 CREGLLG---EAFEVMNS-----------------------------------MSGKGLK 252

Query: 453 PRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           P  FT+N V+NGL   G    AK +       G  P
Sbjct: 253 PTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSP 288


>gi|224063295|ref|XP_002301082.1| predicted protein [Populus trichocarpa]
 gi|222842808|gb|EEE80355.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 126/478 (26%), Positives = 224/478 (46%), Gaps = 23/478 (4%)

Query: 19  YRGLSPLTTTSPAPLPPAAADPAALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQII-K 77
           +R  S L   SP        DP            P+TL +    P        V+ I  +
Sbjct: 12  HRSFSSLPWISPLHFLTPKLDPP-----------PKTLLEPRRKPKFISHETAVNLIKHE 60

Query: 78  RLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPT 137
           R   HAL+    FN++     + H+ +++   ID  AR + ++ V  L+ +M   +    
Sbjct: 61  RDPQHALE---IFNLVVEQKGFNHNHATYSTIIDKLARAKKFQAVDALLRQMMYETCKFH 117

Query: 138 QKTFAIIAERYVSAGKADRAVKIFLSMHE-HGCRQSLNSFNTILDLLCKEKKVE--KAYN 194
           +  F  + + +  + + +R V++F  +      + SL + +T L+LL + K+V+  + + 
Sbjct: 118 ESLFLNLMKYFAKSSEFERVVEMFNKIQPIVREKPSLKAISTCLNLLVESKQVDLLRGFL 177

Query: 195 LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN-PNLTTYNIVLKGYF 253
           L        K +   +N+     C       A  V+KEM    ++ PNL TY+ ++ G  
Sbjct: 178 LDLNKDHMLKPNTCIFNIFIKYHCKSGDLESAFAVVKEMKKSSISYPNLITYSTLMDGLC 237

Query: 254 RAGQIEEAWRFFLEM-KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
            +G+++EA   F EM  K +   D +TY  +++GF   G++ RA+ + + M + G  P+V
Sbjct: 238 ESGRLKEAIELFEEMVSKDQILPDALTYNVLINGFSCWGKVDRAKKIMEFMKSNGCSPNV 297

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
             Y+A++   CK+  +E A+  FEEM   G   ++  Y ++I   C  G ++ A+  +  
Sbjct: 298 FNYSALMSGFCKEGRLEEAMDAFEEMKIFGLKQDTVGYTILINYFCRFGRIDEAMALLEE 357

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           MK+ +C+ ++ T N+L+R FC  G  E  L +  ++ S     N  +Y I+++S+    +
Sbjct: 358 MKETKCKADIVTVNVLLRGFCGEGRTEEALGMLNRLSSEGIYLNKASYRIVLNSLC---Q 414

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
             DL  A +LL   + RGF+P   T N +L GL   G    A   L   +  G  P Q
Sbjct: 415 KGDLDKALELLGLTLSRGFVPHHATSNELLVGLCKAGMADDAVVALYGLAEMGFKPEQ 472



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 150/299 (50%), Gaps = 3/299 (1%)

Query: 118 DYRTVWTLVHRMKSLSLG-PTQKTFAIIAERYVSAGKADRAVKIFLSM-HEHGCRQSLNS 175
           D  + + +V  MK  S+  P   T++ + +    +G+   A+++F  M  +        +
Sbjct: 205 DLESAFAVVKEMKKSSISYPNLITYSTLMDGLCESGRLKEAIELFEEMVSKDQILPDALT 264

Query: 176 FNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           +N +++      KV++A  + +  +      +V +Y+ + +G+C   R  +A++  +EM 
Sbjct: 265 YNVLINGFSCWGKVDRAKKIMEFMKSNGCSPNVFNYSALMSGFCKEGRLEEAMDAFEEMK 324

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
             GL  +   Y I++  + R G+I+EA     EMK+ KC+ D+VT   ++ GF   G  +
Sbjct: 325 IFGLKQDTVGYTILINYFCRFGRIDEAMALLEEMKETKCKADIVTVNVLLRGFCGEGRTE 384

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
            A  + + + + G+  + A+Y  ++  LC+K  ++ A+ +    + +G++P+  T N ++
Sbjct: 385 EALGMLNRLSSEGIYLNKASYRIVLNSLCQKGDLDKALELLGLTLSRGFVPHHATSNELL 444

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
            GLC  G  + A+  +  + +   +P   ++ +L+ + C   ++    EL +++ +  C
Sbjct: 445 VGLCKAGMADDAVVALYGLAEMGFKPEQDSWALLVEFVCRERKLLLAFELLDELTANEC 503



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 127/252 (50%), Gaps = 5/252 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+ ++   +   GK DRA KI   M  +GC  ++ +++ ++   CKE ++E+A + 
Sbjct: 260 PDALTYNVLINGFSCWGKVDRAKKIMEFMKSNGCSPNVFNYSALMSGFCKEGRLEEAMDA 319

Query: 196 F---KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
           F   K+F    K D + Y ++ N +C   R ++A+ +L+EM +     ++ T N++L+G+
Sbjct: 320 FEEMKIF--GLKQDTVGYTILINYFCRFGRIDEAMALLEEMKETKCKADIVTVNVLLRGF 377

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
              G+ EEA      +      ++  +Y  +++     G++ +A  +    ++ G +P  
Sbjct: 378 CGEGRTEEALGMLNRLSSEGIYLNKASYRIVLNSLCQKGDLDKALELLGLTLSRGFVPHH 437

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
           AT N ++  LCK    ++A++    +   G+ P   ++ +++  +C   ++  A E +  
Sbjct: 438 ATSNELLVGLCKAGMADDAVVALYGLAEMGFKPEQDSWALLVEFVCRERKLLLAFELLDE 497

Query: 373 MKDDECEPNVQT 384
           +  +ECE  V +
Sbjct: 498 LTANECEDFVPS 509



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 117/291 (40%), Gaps = 39/291 (13%)

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVD-RGLNPNLTTYNIVLKGYFRAGQIEEAW 262
           K   IS+    N     +    ALE+   +V+ +G N N  TY+ ++    RA + +   
Sbjct: 44  KPKFISHETAVNLIKHERDPQHALEIFNLVVEQKGFNHNHATYSTIIDKLARAKKFQAVD 103

Query: 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322
               +M    C+     +  ++  F    E +R   +F+                 IQ +
Sbjct: 104 ALLRQMMYETCKFHESLFLNLMKYFAKSSEFERVVEMFNK----------------IQPI 147

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
            ++     AI              ST  N+++       ++ R    +   KD   +PN 
Sbjct: 148 VREKPSLKAI--------------STCLNLLVES--KQVDLLRGF-LLDLNKDHMLKPNT 190

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMG-SGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
             +NI I+Y C +G++E    + ++M  S +  PNL TY+ L+  +    +S  L  A +
Sbjct: 191 CIFNIFIKYHCKSGDLESAFAVVKEMKKSSISYPNLITYSTLMDGLC---ESGRLKEAIE 247

Query: 442 LLIEMVDRG-FMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           L  EMV +   +P   T+N ++NG    G    AK+I+      G  P  F
Sbjct: 248 LFEEMVSKDQILPDALTYNVLINGFSCWGKVDRAKKIMEFMKSNGCSPNVF 298


>gi|147801213|emb|CAN73209.1| hypothetical protein VITISV_002838 [Vitis vinifera]
          Length = 1024

 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 140/504 (27%), Positives = 226/504 (44%), Gaps = 78/504 (15%)

Query: 8   PPKN----HLHFFCIYRGLSPLTTTSPAPLPPAAADPAALASLILTSTDP--RTLTQTLH 61
           PP N    H  F        P+  T    L  A     + A   L +T+P    L  +L 
Sbjct: 121 PPLNSLLIHTQFISSISSQQPIKITPNEGLKAATKTKRSQAMARLINTEPWSHELQSSLA 180

Query: 62  --CPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDY 119
              PSL  T  L  Q ++ +   A KALHFF  +     + H+  S+   I++  R R+ 
Sbjct: 181 ELAPSLSKTTVL--QTLQLIRTPA-KALHFFRWVEAK-GFTHNEQSYFLMIEILGRSRNL 236

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
                 V  ++  S G                     ++K+F +M E G   S+ +FN++
Sbjct: 237 NAARNFVFSIEKKSGGA-------------------ESIKVFKTMKEIGVSPSVVTFNSL 277

Query: 180 LDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR-GL 238
           L ++ K              RG                    RT+ A ++  EM+D  G+
Sbjct: 278 LSIVLK--------------RG--------------------RTSMAKQLFDEMLDTYGV 303

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
            P+  T+NI+++G+     ++E + FF EM + KC+ DVVTY T+V G    G++K A N
Sbjct: 304 TPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHN 363

Query: 299 VFDGMV--NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
           V  GMV  +  + P+V TY  +I+  C K  +  A+ +  EMV +G  PN  TYN +I+G
Sbjct: 364 VVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQG 423

Query: 357 LCHTGEMERALEFV-GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
           LC   ++++  E + G + D    P+  T N LI+  C  G++E    +FEKM      P
Sbjct: 424 LCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQP 483

Query: 416 NLDTYNILISSMFVR---KKSD---DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
           +  TY++L+ S+  R   ++++   D L   ++L+   D G  P    +N +   L   G
Sbjct: 484 DSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLH--DVGCKPLVAAYNPMFEYLCSNG 541

Query: 470 NQGLAKEILR-LQSRCGRLPRQFK 492
               A+ + R L  R  + P  +K
Sbjct: 542 KTKKAERVFRQLMKRGTQDPPSYK 565



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 165/366 (45%), Gaps = 54/366 (14%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   TF I+   +      D     F  M    C   + ++NT++D LC+  KV+ A+N+
Sbjct: 305 PDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNV 364

Query: 196 FKVFRGK---FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
            K    K      +V++Y  +  G+C+ +   +AL +L EMV RGL PN  TYN +++G 
Sbjct: 365 VKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGL 424

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG-VLPS 311
             A +++                                   + + + +GMV  G  +P 
Sbjct: 425 CEAQKLD-----------------------------------KIKEILEGMVGDGGFIPD 449

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
             T N +I+  C    +E A  VFE+M      P+S TY+V++R LC  G+  RA EF  
Sbjct: 450 TCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFD 509

Query: 372 RMKDDE-------CEPNVQTYNILIRYFCDAGEIERGLELFEK-MGSGVCLPNLDTYNIL 423
            + + E       C+P V  YN +  Y C  G+ ++   +F + M  G   P   +Y  L
Sbjct: 510 ELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDP--PSYKTL 567

Query: 424 ISSMFVRKKSDDLLVAG-KLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           I     R+ + +   AG  LL+ M+ R F+P   T+  +++GLL  G+  LA + L    
Sbjct: 568 ILG-HCREGTPE---AGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKML 623

Query: 483 RCGRLP 488
           +   LP
Sbjct: 624 KSSHLP 629



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/332 (20%), Positives = 139/332 (41%), Gaps = 33/332 (9%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRM--KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFL 162
           +++  +D   R    +    +V  M  KS +L P   T+  +   Y        A+ +  
Sbjct: 344 TYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLA 403

Query: 163 SMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLV 220
            M   G + +  ++NT++  LC+ +K++K   + +  V  G F  D  + N +    C +
Sbjct: 404 EMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTM 463

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
            +  +A  V ++M +  + P+  TY+++++   + G    A  FF E+ +++  +  V  
Sbjct: 464 GKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDV-- 521

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
                                     G  P VA YN M + LC     + A  VF +++ 
Sbjct: 522 --------------------------GCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMK 555

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           +G   +  +Y  +I G C  G  E   + +  M   +  P+ +TY ++I      G+   
Sbjct: 556 RGTQ-DPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVL 614

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
             +  EKM     LP    ++ +++++  +++
Sbjct: 615 AHKSLEKMLKSSHLPTTAIFHSILAALVEKER 646


>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 566

 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 174/357 (48%), Gaps = 37/357 (10%)

Query: 142 AIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK---- 197
           A+I E +   G+   A +I   + E G     NS+N +++  CK  ++E+A  +      
Sbjct: 109 ALIRE-FCKIGRTKNATRIMGILEESGAVIDANSYNVLINAYCKSGEIEEALRVLDHTSV 167

Query: 198 --------------VFRGKFKA---------------DVISYNVIANGWCLVKRTNKALE 228
                           RGK K                DV++  V+ +  C      +A++
Sbjct: 168 APNAATYDAVLCSLCDRGKLKQAMQVLDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMK 227

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           +  EM  +G  P++ TYN+++KG+ + G+++EA  F  ++    C+ DV+++  I+    
Sbjct: 228 LFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLC 287

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G    A  +   M+  G  PSV T+N +I  LC+K  +  A+ V E M   G+ PNS 
Sbjct: 288 SGGRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSR 347

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           ++N +I+G C+   ++RA+E +  M    C P++ TYNIL+   C  G+++  + +  ++
Sbjct: 348 SFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQL 407

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            S  C P+L +YN +I  +    K++   +A +LL EM  +G  P   T   V+ GL
Sbjct: 408 SSKGCSPSLISYNTVIDGLLKVGKAE---LAVELLEEMCYKGLKPDLITCTSVVGGL 461



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 168/347 (48%), Gaps = 4/347 (1%)

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
           S+ P   T+  +       GK  +A+++     +  C   + +   ++D  CKE  V +A
Sbjct: 166 SVAPNAATYDAVLCSLCDRGKLKQAMQVLDRQLQSKCYPDVVTCTVLIDATCKESGVGQA 225

Query: 193 YNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
             LF   RGK  K DV++YNV+  G+C   R ++A+  LK++   G   ++ ++N++L+ 
Sbjct: 226 MKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRS 285

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
               G+  +A +    M ++ C   VVT+  +++     G + +A NV + M   G  P+
Sbjct: 286 LCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPN 345

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
             ++N +IQ  C +  ++ AI   E MV +G  P+  TYN+++  LC  G+++ A+  + 
Sbjct: 346 SRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILS 405

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
           ++    C P++ +YN +I      G+ E  +EL E+M      P+L T   ++  +    
Sbjct: 406 QLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREG 465

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           K  + +   K    +   G  P  F +N ++ GL       LA + L
Sbjct: 466 KVHEAI---KFFHYLKGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFL 509



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 183/389 (47%), Gaps = 39/389 (10%)

Query: 108 HAIDLAARLRDYRT---VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           H   L+  + D+R     W+  H      LG     FA+   +Y ++G     +K  L  
Sbjct: 6   HVFGLSGGVIDFRKPKGTWSRKH------LGNC--VFAV--SKYENSG-----LKGNLQH 50

Query: 165 HEHGCRQSLNSFNTILDL-------LCK---EKKVEKAYNLFKVFRGKFK-ADVISYNVI 213
            E   + +LN  NT L+        LC+     ++E+     +    K K  DV++   +
Sbjct: 51  SERFSKGALNGVNTSLNFEESEIHHLCRLIRNGELEEGSRFLEYMTNKGKIPDVVACTAL 110

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
              +C + RT  A  ++  + + G   +  +YN+++  Y ++G+IEEA R    +     
Sbjct: 111 IREFCKIGRTKNATRIMGILEESGAVIDANSYNVLINAYCKSGEIEEALRV---LDHTSV 167

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
             +  TY  ++      G++K+A  V D  +     P V T   +I   CK+  V  A+ 
Sbjct: 168 APNAATYDAVLCSLCDRGKLKQAMQVLDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMK 227

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           +F EM GKG  P+  TYNV+I+G C  G ++ A+ F+ ++    C+ +V ++N+++R  C
Sbjct: 228 LFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLC 287

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR-GFM 452
             G     ++L   M    C P++ T+NILI+  F+ +K   LL     ++EM+ + G  
Sbjct: 288 SGGRWMDAMKLLATMLRKGCFPSVVTFNILIN--FLCQKG--LLGKALNVLEMMPKHGHT 343

Query: 453 PRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481
           P   +FN ++ G      +G+ + I  L+
Sbjct: 344 PNSRSFNPLIQG--FCNRKGIDRAIEHLE 370



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 154/349 (44%), Gaps = 6/349 (1%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID   +         L + M+     P   T+ ++ + +   G+ D A+     +  +GC
Sbjct: 213 IDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGC 272

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKRTNKAL 227
           +  + S N IL  LC   +   A  L      +G F + V+++N++ N  C      KAL
Sbjct: 273 QSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPS-VVTFNILINFLCQKGLLGKAL 331

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
            VL+ M   G  PN  ++N +++G+     I+ A      M  R C  D+VTY  ++   
Sbjct: 332 NVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTAL 391

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
              G++  A  +   + + G  PS+ +YN +I  L K    E A+ + EEM  KG  P+ 
Sbjct: 392 CKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDL 451

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
            T   V+ GL   G++  A++F   +K    +PN   YN ++   C A +    ++    
Sbjct: 452 ITCTSVVGGLSREGKVHEAIKFFHYLKGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFLVD 511

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
           M +  C P   +Y  LI  +     +++   A KL  E+  RG + +  
Sbjct: 512 MVANGCKPTEASYTTLIKGITYEGLAEE---ASKLSNELYSRGLVKKSL 557



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 152/343 (44%), Gaps = 7/343 (2%)

Query: 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA- 205
           R +  G+ +   +    M   G    + +   ++   CK  + + A  +  +        
Sbjct: 78  RLIRNGELEEGSRFLEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILEESGAVI 137

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           D  SYNV+ N +C      +AL VL       + PN  TY+ VL      G++++A +  
Sbjct: 138 DANSYNVLINAYCKSGEIEEALRVLDHT---SVAPNAATYDAVLCSLCDRGKLKQAMQVL 194

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
               + KC  DVVT T ++        + +A  +F+ M   G  P V TYN +I+  CK+
Sbjct: 195 DRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKE 254

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
             ++ AI+  +++   G   +  ++N+++R LC  G    A++ +  M    C P+V T+
Sbjct: 255 GRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTF 314

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           NILI + C  G + + L + E M      PN  ++N LI     RK  D  +   + L  
Sbjct: 315 NILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAI---EHLEI 371

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           MV RG  P   T+N +L  L   G    A  IL   S  G  P
Sbjct: 372 MVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSP 414


>gi|147772266|emb|CAN67349.1| hypothetical protein VITISV_018089 [Vitis vinifera]
          Length = 483

 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 175/376 (46%), Gaps = 4/376 (1%)

Query: 89  FFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERY 148
           F  IL  +     SP  FD      A+++  R    +  +MK     P  ++        
Sbjct: 97  FEAILYSYRICDSSPCVFDSLFKTYAQMKKLRNAIDVFCQMKDYGFLPRVESCNAYISAS 156

Query: 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADV 207
           +S  + D A+  +  M  +    ++ + N ++   CK  K+EKA  +FK      F   +
Sbjct: 157 ISLQRGDIALTFYREMQRYRISPNVYTLNMVMCAFCKWGKLEKAIEVFKKMETMGFSPTI 216

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
            SYN +  G+C     N  +++   M   G+ P+  T+N ++ G+ R G++ EA + F E
Sbjct: 217 TSYNTLIAGYCNKGLLNSGMKLKILMEKNGVRPDDVTFNTLINGFCRGGKLHEANKIFSE 276

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           MK      + +TY T+++G+  VG  +    + D M+  G+   + TYNA+I  LC +  
Sbjct: 277 MKANDVVPNTITYNTLINGYSQVGNSEMGGRLHDEMLRNGIKADILTYNALILGLCMEGR 336

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
            + A  + +E+  +  +PNS+T++ +I G C     ERA +    M    C PN  T+ +
Sbjct: 337 TKKAAYLVKELDRENLVPNSSTFSALITGQCVRKNSERAFQLYKSMIRSGCHPNYHTFKM 396

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           LI  FC   + +  +E+  +M      P+ DT + L   +++  K +   +A KL  EM 
Sbjct: 397 LISTFCKNEDFDGAVEVVREMSERSIAPDSDTLSELCRGLWLSGKEE---LALKLCKEME 453

Query: 448 DRGFMPRKFTFNRVLN 463
            +  MP  F   + +N
Sbjct: 454 MKHLMPEGFDKXKTIN 469



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 127/296 (42%), Gaps = 48/296 (16%)

Query: 203 FKADVISYNVIANGWCL----------VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
           F+A + SY +  +  C+          +K+   A++V  +M D G  P + + N  +   
Sbjct: 97  FEAILYSYRICDSSPCVFDSLFKTYAQMKKLRNAIDVFCQMKDYGFLPRVESCNAYISAS 156

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
               + + A  F+ EM++ +                                   + P+V
Sbjct: 157 ISLQRGDIALTFYREMQRYR-----------------------------------ISPNV 181

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            T N ++   CK   +E AI VF++M   G+ P  T+YN +I G C+ G +   ++    
Sbjct: 182 YTLNMVMCAFCKWGKLEKAIEVFKKMETMGFSPTITSYNTLIAGYCNKGLLNSGMKLKIL 241

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           M+ +   P+  T+N LI  FC  G++    ++F +M +   +PN  TYN LI+       
Sbjct: 242 MEKNGVRPDDVTFNTLINGFCRGGKLHEANKIFSEMKANDVVPNTITYNTLINGYSQVGN 301

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           S+   + G+L  EM+  G      T+N ++ GL + G    A  +++   R   +P
Sbjct: 302 SE---MGGRLHDEMLRNGIKADILTYNALILGLCMEGRTKKAAYLVKELDRENLVP 354


>gi|297743431|emb|CBI36298.3| unnamed protein product [Vitis vinifera]
          Length = 641

 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 114/427 (26%), Positives = 201/427 (47%), Gaps = 28/427 (6%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAI 143
            L FF+ +S    Y+   + F ++  + L AR R +  +  ++  M+   + PT++  +I
Sbjct: 76  GLKFFDWVS-RGQYSGPINGFAYSSLLKLLARSRVFSEMEVVLENMRVEEMSPTREAMSI 134

Query: 144 IAERYVSAGKADRAVKIF---LSMHEH-----GCRQSLN------------SFNTIL-DL 182
           + + Y  +G  ++A++++   L  + +      C   LN             F  I+   
Sbjct: 135 VIQAYSDSGLVEKALELYYFVLKTYTYFPDVIACNSLLNMLVKLGRIEIARKFTCIMVKG 194

Query: 183 LCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           LCKE K+E+   L +   G+    ++I YN + +G+C       A  +  E+  +G  P 
Sbjct: 195 LCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPT 254

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           + TY  ++ G+ + G  +   R  +EM  R   ++V  Y TI+      G I +A    +
Sbjct: 255 VETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIE 314

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
           GM+  G  P + TYN +I   C+   V  A  + E+ +GKG MPN  +Y  +I   C  G
Sbjct: 315 GMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQG 374

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
             +RA  ++  M +   +P++ TY  L+     AGE++  L + EKM      P+   YN
Sbjct: 375 GYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYN 434

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481
           IL+S +  + K   L  A  LL EM+D+  +P  F +  +++G +  GN   A+++  L 
Sbjct: 435 ILMSGLCKKFK---LPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELT 491

Query: 482 SRCGRLP 488
              G  P
Sbjct: 492 IEKGMNP 498



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 169/364 (46%), Gaps = 7/364 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           ++  ID   +  D      L   +K     PT +T+  I   +   G      ++ + M+
Sbjct: 223 YNTLIDGYCKKGDMEMANGLFIELKLKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMN 282

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTN 224
             G   ++  +NTI+D   K   + KA    + +     K D+++YN + +G C   + +
Sbjct: 283 SRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVS 342

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           +A ++L++ + +GL PN  +Y  ++  Y + G  + A  + +EM +R  + D+VTY  +V
Sbjct: 343 EADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALV 402

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
           HG  V GE+  A  + + M+  GV P    YN ++  LCKK  +  A L+  EM+ +  +
Sbjct: 403 HGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVL 462

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           P++  Y  ++ G    G ++ A +      +    P +  YN +I+ +C  G ++  +  
Sbjct: 463 PDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMAC 522

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
             +M      P+  TY+ +I       K  DL  A K+  EMV    M  K      L G
Sbjct: 523 INRMKKRHLAPDEFTYSTVIDGYV---KQHDLDGAQKMFREMVK---MKCKPNVMDGLQG 576

Query: 465 LLLI 468
           LLLI
Sbjct: 577 LLLI 580


>gi|356547426|ref|XP_003542113.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Glycine max]
          Length = 825

 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 102/361 (28%), Positives = 173/361 (47%), Gaps = 4/361 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           F++ ID   +         ++ RM  +  GP   T+ I+       G+ + A ++     
Sbjct: 313 FNNVIDAEYKYGLVTEAAEMLRRMAEMGCGPDITTYNIMINFSCKGGRIEEADELLEKAK 372

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTN 224
           E G   +  S+  ++   CK+    KA   LF++     K+D++SY    +G  +    +
Sbjct: 373 ERGLLPNKFSYTPLMHAYCKKGDYVKASGMLFRIAEIGEKSDLVSYGAFIHGVVVAGEID 432

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
            AL V ++M+++G+ P+   YNI++ G  + G+I        EM  R  + DV  + T++
Sbjct: 433 VALMVREKMMEKGVFPDAQIYNILMSGLCKKGRIPAMKLLLSEMLDRNVQPDVYVFATLI 492

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            GF   GE+  A  +F  ++  GV P +  YNAMI+  CK   + +A+    EM    + 
Sbjct: 493 DGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNEMNSVHHA 552

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           P+  TY+ VI G     +M  AL+  G+M   + +PNV TY  LI  FC   ++ R  ++
Sbjct: 553 PDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKV 612

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           F  M S   +PN+ TY  L+   F   K +    A  +   M+  G +P   TF+ ++NG
Sbjct: 613 FSGMKSFDLVPNVVTYTTLVGGFFKAGKPER---ATSIFELMLMNGCLPNDATFHYLING 669

Query: 465 L 465
           L
Sbjct: 670 L 670



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 116/458 (25%), Positives = 205/458 (44%), Gaps = 50/458 (10%)

Query: 75  IIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHA--IDLAARLRDYRTVWTLVHRMKSL 132
           +I R+ +  L  L FF+  S  P ++ S     H+  + L A  R +  +  ++  MK+ 
Sbjct: 67  VIDRVHDAEL-GLKFFDWASTRP-FSCSLDGVAHSSLLKLLASYRVFPEIELVLENMKAQ 124

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE-HGCRQSLNSFNTILDLLCKEKKVEK 191
            L PT++ F+ +   Y  +G  DRA+++F ++ E H C  +  + N +L+ L K  KV+ 
Sbjct: 125 HLKPTREAFSALILAYAESGSLDRALQLFHTVREMHNCFPTFVASNLLLNGLVKSGKVDV 184

Query: 192 AYNLF-KVFR------------------------GKFKAD---------------VISYN 211
           A  L+ K+ +                        GK +                 V+ YN
Sbjct: 185 ALQLYDKMLQTDDGTGAVVDNYTTSIMVKGLCNLGKIEEGRRLIKHRWGKCCVPHVVFYN 244

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
           +I +G+C       A   L E+  +G+ P + TY  ++ G+ +AG+ E   +   EM  R
Sbjct: 245 MIIDGYCKKGDLQCATRALNELKMKGVLPTVETYGALINGFCKAGEFEAVDQLLTEMAAR 304

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
              ++V  +  ++      G +  A  +   M   G  P + TYN MI   CK   +E A
Sbjct: 305 GLNMNVKVFNNVIDAEYKYGLVTEAAEMLRRMAEMGCGPDITTYNIMINFSCKGGRIEEA 364

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
             + E+   +G +PN  +Y  ++   C  G+  +A   + R+ +   + ++ +Y   I  
Sbjct: 365 DELLEKAKERGLLPNKFSYTPLMHAYCKKGDYVKASGMLFRIAEIGEKSDLVSYGAFIHG 424

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLI-EMVDRG 450
              AGEI+  L + EKM      P+   YNIL+S +  + +    + A KLL+ EM+DR 
Sbjct: 425 VVVAGEIDVALMVREKMMEKGVFPDAQIYNILMSGLCKKGR----IPAMKLLLSEMLDRN 480

Query: 451 FMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             P  + F  +++G +  G    A +I ++  R G  P
Sbjct: 481 VQPDVYVFATLIDGFIRNGELDEAIKIFKVIIRKGVDP 518



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 151/323 (46%), Gaps = 20/323 (6%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           S  +F H + +A  +        +  +M    + P  + + I+       G+   A+K+ 
Sbjct: 417 SYGAFIHGVVVAGEID---VALMVREKMMEKGVFPDAQIYNILMSGLCKKGRIP-AMKLL 472

Query: 162 LS-MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCL 219
           LS M +   +  +  F T++D   +  ++++A  +FKV  R      ++ YN +  G+C 
Sbjct: 473 LSEMLDRNVQPDVYVFATLIDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCK 532

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
             +   AL  L EM      P+  TY+ V+ GY +   +  A + F +M K K + +V+T
Sbjct: 533 FGKMTDALSCLNEMNSVHHAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVIT 592

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           YT++++GF    ++ RA  VF GM +  ++P+V TY  ++    K    E A  +FE M+
Sbjct: 593 YTSLINGFCKKADMIRAEKVFSGMKSFDLVPNVVTYTTLVGGFFKAGKPERATSIFELML 652

Query: 340 GKGYMPNSTTYNVVIRGLCHTG------------EMERA--LEFVGRMKDDECEPNVQTY 385
             G +PN  T++ +I GL +T             E ER+  L+F   M  D  +  +  Y
Sbjct: 653 MNGCLPNDATFHYLINGLTNTATSPVLIEEKDSKENERSLILDFFTMMLLDGWDQVIAAY 712

Query: 386 NILIRYFCDAGEIERGLELFEKM 408
           N +I   C  G ++    L  KM
Sbjct: 713 NSVIVCLCKHGTVDTAQLLLTKM 735



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 126/288 (43%), Gaps = 50/288 (17%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M   ++ P    FA + + ++  G+ D A+KIF  +   G    +  +N ++   C
Sbjct: 472 LLSEMLDRNVQPDVYVFATLIDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFC 531

Query: 185 KEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  K+  A +          A D  +Y+ + +G+      + AL++  +M+     PN+ 
Sbjct: 532 KFGKMTDALSCLNEMNSVHHAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVI 591

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY  ++ G+ +   +  A + F  MK      +VVTYTT+V GF   G+ +RA ++F+ M
Sbjct: 592 TYTSLINGFCKKADMIRAEKVFSGMKSFDLVPNVVTYTTLVGGFFKAGKPERATSIFELM 651

Query: 304 VNGGVLPS-------------------------------------------------VAT 314
           +  G LP+                                                 +A 
Sbjct: 652 LMNGCLPNDATFHYLINGLTNTATSPVLIEEKDSKENERSLILDFFTMMLLDGWDQVIAA 711

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           YN++I  LCK  +V+ A L+  +M+ KG++ +S  +  ++ GLCH G+
Sbjct: 712 YNSVIVCLCKHGTVDTAQLLLTKMLTKGFLIDSVCFTALLHGLCHKGK 759



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 124/269 (46%), Gaps = 10/269 (3%)

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK-RKCEIDVVTYTTIVHGF 287
           VL+ M  + L P    ++ ++  Y  +G ++ A + F  +++   C    V    +++G 
Sbjct: 117 VLENMKAQHLKPTREAFSALILAYAESGSLDRALQLFHTVREMHNCFPTFVASNLLLNGL 176

Query: 288 GVVGEIKRARNVFDGMVN-----GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
              G++  A  ++D M+      G V+ +  T + M++ LC    +E    + +   GK 
Sbjct: 177 VKSGKVDVALQLYDKMLQTDDGTGAVVDNYTT-SIMVKGLCNLGKIEEGRRLIKHRWGKC 235

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
            +P+   YN++I G C  G+++ A   +  +K     P V+TY  LI  FC AGE E   
Sbjct: 236 CVPHVVFYNMIIDGYCKKGDLQCATRALNELKMKGVLPTVETYGALINGFCKAGEFEAVD 295

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           +L  +M +     N+  +N +I + +   K   +  A ++L  M + G  P   T+N ++
Sbjct: 296 QLLTEMAARGLNMNVKVFNNVIDAEY---KYGLVTEAAEMLRRMAEMGCGPDITTYNIMI 352

Query: 463 NGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           N     G    A E+L      G LP +F
Sbjct: 353 NFSCKGGRIEEADELLEKAKERGLLPNKF 381



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/266 (16%), Positives = 105/266 (39%), Gaps = 50/266 (18%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           + ++ M S+   P + T++ + + YV       A+K+F  M +H  + ++ ++ ++++  
Sbjct: 541 SCLNEMNSVHHAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGF 600

Query: 184 CKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CK+  + +A  +F   +      +V++Y  +  G+    +  +A  + + M+  G  PN 
Sbjct: 601 CKKADMIRAEKVFSGMKSFDLVPNVVTYTTLVGGFFKAGKPERATSIFELMLMNGCLPND 660

Query: 243 TTYNIVLKG--------------------------YF----------------------- 253
            T++ ++ G                          +F                       
Sbjct: 661 ATFHYLINGLTNTATSPVLIEEKDSKENERSLILDFFTMMLLDGWDQVIAAYNSVIVCLC 720

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
           + G ++ A     +M  +   ID V +T ++HG    G+ K  RN+    +N   L +  
Sbjct: 721 KHGTVDTAQLLLTKMLTKGFLIDSVCFTALLHGLCHKGKSKEWRNIISCDLNKIELQTAV 780

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMV 339
            Y+  +     +  +  A ++ + +V
Sbjct: 781 KYSLTLDKYLYQGRLSEASVILQTLV 806


>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
          Length = 609

 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 152/287 (52%), Gaps = 1/287 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
            ++ M S    P   T  II     S G+   A K+   M   GC  S+ +FN +++ LC
Sbjct: 139 FLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLC 198

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           ++  + +A ++  K+       + +SYN + +G+C  K+ ++A+E L  MV RG  P++ 
Sbjct: 199 RQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIV 258

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN +L    + G+++ A     ++  + C   ++TY T++ G   VG+ +RA  + D M
Sbjct: 259 TYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEM 318

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G+ P + TY++++  L ++  V+ AI  F ++ G G  PN+ TYN ++ GLC + + 
Sbjct: 319 RRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQT 378

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           +RA++F+  M    C+P   TY ILI      G  +  L+L  ++ S
Sbjct: 379 DRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCS 425



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 154/295 (52%), Gaps = 4/295 (1%)

Query: 172 SLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVL 230
           SL+ F+  +   CKE  V +A  L    R K  K DV++YNV+ NG C   R ++A++ L
Sbjct: 81  SLSGFSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFL 140

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
             M   G  PN+ T+NI+L+     G+  +A +   +M ++ C   VVT+  +++     
Sbjct: 141 NNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQ 200

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           G + RA ++ + M   G  P+  +YN ++   CK+  ++ AI   + MV +G  P+  TY
Sbjct: 201 GLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTY 260

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           N ++  LC  G+++ A+E + ++    C P + TYN +I      G+ ER ++L ++M  
Sbjct: 261 NTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRR 320

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
               P++ TY+ L+S +    K D+   A K   ++   G  P   T+N ++ GL
Sbjct: 321 KGLKPDIITYSSLVSGLSREGKVDE---AIKFFHDLEGLGIRPNAITYNSIMLGL 372



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 144/293 (49%), Gaps = 8/293 (2%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYR--TVWTLVHRMKSLSLGPTQKTFA 142
           +A+ F N +   P+Y   P+   H I L +     R      L+  M      P+  TF 
Sbjct: 135 EAIKFLNNM---PSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFN 191

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--R 200
           I+       G   RA+ I   M  HGC  +  S+N +L   CKEKK+++A     +   R
Sbjct: 192 ILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSR 251

Query: 201 GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
           G +  D+++YN +    C   + + A+E+L ++  +G +P L TYN V+ G  + G+ E 
Sbjct: 252 GCY-PDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTER 310

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
           A +   EM+++  + D++TY+++V G    G++  A   F  +   G+ P+  TYN+++ 
Sbjct: 311 AIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIML 370

Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
            LCK    + AI     M+ K   P   TY ++I G+ + G  + AL+ +  +
Sbjct: 371 GLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNEL 423



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 131/248 (52%), Gaps = 3/248 (1%)

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           +L+ ++  ++   +   + +A +   EM+ +  + DVVTY  +++G    G +  A    
Sbjct: 81  SLSGFSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFL 140

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           + M + G  P+V T+N +++ +C      +A  +  +M+ KG  P+  T+N++I  LC  
Sbjct: 141 NNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQ 200

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
           G + RA++ + +M    C PN  +YN L+  FC   +++R +E  + M S  C P++ TY
Sbjct: 201 GLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTY 260

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           N L++++    K D   VA ++L ++  +G  P   T+N V++GL  +G    A ++L  
Sbjct: 261 NTLLTALCKDGKVD---VAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDE 317

Query: 481 QSRCGRLP 488
             R G  P
Sbjct: 318 MRRKGLKP 325


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 174/358 (48%), Gaps = 5/358 (1%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           ++  L L P   TF  +        +   A+ +F  M E  CR ++ +F T+++ LC+E 
Sbjct: 139 KITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREG 198

Query: 188 KVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG-LNPNLTTY 245
           ++ +A  L  ++     +   I+Y  I +G C    T  AL +L++M +   + PN+  Y
Sbjct: 199 RIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIY 258

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           + ++    + G+  +A   F EM+++    D+ TY +++ GF   G    A  +   M+ 
Sbjct: 259 SAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLE 318

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
             + P V TYNA+I    K+     A  +++EM+ +G +PN+ TY+ +I G C    ++ 
Sbjct: 319 RKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDA 378

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           A      M    C PN+ T+N LI  +C A  I+ G+EL  +M     + +  TYN LI 
Sbjct: 379 AEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIH 438

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
             ++     DL  A  LL EM+  G  P   T + +L+GL   G    A E+ ++  +
Sbjct: 439 GFYL---VGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQK 493



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 113/431 (26%), Positives = 192/431 (44%), Gaps = 55/431 (12%)

Query: 83  ALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           AL        L  HP    + ++  H + +  R+ +      L H+M   +  P   TF 
Sbjct: 133 ALSTFGKITKLGLHPDVV-TFTTLLHGLCVEDRVSE---ALNLFHQMFETTCRPNVVTFT 188

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-- 200
            +       G+   AV +   M E G + +  ++ TI+D +CK+     A NL +     
Sbjct: 189 TLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEV 248

Query: 201 GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
                +V+ Y+ I +  C   R + A  +  EM ++G+ P+L TYN ++ G+  +G+  +
Sbjct: 249 SHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSD 308

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
           A +   EM +RK   DVVTY  +++ F   G+   A  ++D M+  G++P+  TY++MI 
Sbjct: 309 AEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMID 368

Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
             CK++ ++ A  +F  M  KG  PN  T+N +I G C    ++  +E +  M +     
Sbjct: 369 GFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVA 428

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKM-GSGVC-------------------------- 413
           +  TYN LI  F   G++   L+L ++M  SG+C                          
Sbjct: 429 DTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMF 488

Query: 414 -------------------LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
                               P++ TYNILIS +    K    L A +L  EM  RG +P 
Sbjct: 489 KVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGK---FLEAEELYEEMPHRGIVPD 545

Query: 455 KFTFNRVLNGL 465
             T++ +++GL
Sbjct: 546 TITYSSMIDGL 556



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 113/416 (27%), Positives = 191/416 (45%), Gaps = 16/416 (3%)

Query: 82  HALKALH-----FFNILSYHPTYAHSPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSL 134
           H +K L      F ++L   P     PS  D    + +  R+     V +L  +M+   +
Sbjct: 55  HEIKGLEDAIDLFSDMLRSRPL----PSVVDFCKLMGVVVRMERPDLVISLYQKMERKQI 110

Query: 135 GPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN 194
                +F I+ + + S  K   A+  F  + + G    + +F T+L  LC E +V +A N
Sbjct: 111 RCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALN 170

Query: 195 LF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
           LF ++F    + +V+++  + NG C   R  +A+ +L  M++ GL P   TY  ++ G  
Sbjct: 171 LFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMC 230

Query: 254 RAGQIEEAWRFFLEMKKRKCEI-DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
           + G    A     +M++    I +VV Y+ I+      G    A+N+F  M   G+ P +
Sbjct: 231 KKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDL 290

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            TYN+MI   C      +A  + +EM+ +   P+  TYN +I      G+   A E    
Sbjct: 291 FTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDE 350

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           M      PN  TY+ +I  FC    ++    +F  M +  C PNL T+N LI      K+
Sbjct: 351 MLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKR 410

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            DD +   +LL EM + G +    T+N +++G  L+G+   A ++L+     G  P
Sbjct: 411 IDDGM---ELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCP 463



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 154/309 (49%), Gaps = 12/309 (3%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T++ + + +    + D A  +F  M   GC  +L +FNT++D  C  K+++    L
Sbjct: 358 PNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMEL 417

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             ++      AD  +YN + +G+ LV   N AL++L+EM+  GL P++ T + +L G   
Sbjct: 418 LHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCD 477

Query: 255 AGQIEEAWRFFLEMKKRK-----------CEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            G++++A   F  M+K K            E DV TY  ++ G    G+   A  +++ M
Sbjct: 478 NGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEM 537

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            + G++P   TY++MI  LCK+  ++ A  +F+ M  K + PN  T+  +I G C  G +
Sbjct: 538 PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRV 597

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           +  LE    M       N  TY  LI  F   G I   L++F++M S    P+  T   +
Sbjct: 598 DDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNM 657

Query: 424 ISSMFVRKK 432
           ++ ++ +++
Sbjct: 658 LTGLWSKEE 666



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 181/396 (45%), Gaps = 17/396 (4%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           +   ID   +   +     L   M+   + P   T+  +   + S+G+   A ++   M 
Sbjct: 258 YSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEML 317

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKRT 223
           E      + ++N +++   KE K  +A  L+     RG    + I+Y+ + +G+C   R 
Sbjct: 318 ERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGII-PNTITYSSMIDGFCKQNRL 376

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A  +   M  +G +PNL T+N ++ GY  A +I++      EM +     D  TY T+
Sbjct: 377 DAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTL 436

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK-- 341
           +HGF +VG++  A ++   M++ G+ P + T + ++  LC    +++A+ +F+ M     
Sbjct: 437 IHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKK 496

Query: 342 ---------GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
                    G  P+  TYN++I GL + G+   A E    M      P+  TY+ +I   
Sbjct: 497 DLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGL 556

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
           C    ++   ++F+ MGS    PN+ T+  LI+      + DD L   +L  EM  RG +
Sbjct: 557 CKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGL---ELFCEMGRRGIV 613

Query: 453 PRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
               T+  ++ G   +GN   A +I +     G  P
Sbjct: 614 ANAITYITLICGFRKVGNINGALDIFQEMISSGVYP 649



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 152/326 (46%), Gaps = 19/326 (5%)

Query: 63  PSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDYR 120
           P+      ++D   K+  N    A H F +++   T   SP+  +F+  ID     +   
Sbjct: 358 PNTITYSSMIDGFCKQ--NRLDAAEHMFYLMA---TKGCSPNLITFNTLIDGYCGAKRID 412

Query: 121 TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180
               L+H M    L     T+  +   +   G  + A+ +   M   G    + + +T+L
Sbjct: 413 DGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLL 472

Query: 181 DLLCKEKKVEKAYNLFKVFRGKFK------------ADVISYNVIANGWCLVKRTNKALE 228
           D LC   K++ A  +FKV +   K             DV +YN++ +G     +  +A E
Sbjct: 473 DGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEE 532

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           + +EM  RG+ P+  TY+ ++ G  +  +++EA + F  M  +    +VVT+TT+++G+ 
Sbjct: 533 LYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYC 592

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G +     +F  M   G++ +  TY  +I    K  ++  A+ +F+EM+  G  P++ 
Sbjct: 593 KAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTI 652

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMK 374
           T   ++ GL    E++RA+  + +++
Sbjct: 653 TIRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 95/194 (48%), Gaps = 3/194 (1%)

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
           GF  +  ++ A ++F  M+    LPSV  +  ++ V+ + +  +  I ++++M  K    
Sbjct: 53  GFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRC 112

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           +  ++N++I+  C   ++  AL   G++      P+V T+  L+   C    +   L LF
Sbjct: 113 DIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLF 172

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            +M    C PN+ T+  L++ +    +   ++ A  LL  M++ G  P + T+  +++G+
Sbjct: 173 HQMFETTCRPNVVTFTTLMNGLCREGR---IVEAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 466 LLIGNQGLAKEILR 479
              G+   A  +LR
Sbjct: 230 CKKGDTVSALNLLR 243


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 112/422 (26%), Positives = 191/422 (45%), Gaps = 41/422 (9%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII 144
           +AL  F ++        + S+++  ID+          + ++  M+  SL P   T  I+
Sbjct: 372 EALSLFEVMKKDAE--PNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIM 429

Query: 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKF 203
            +R   A K + A KIF S  + GC     ++ +++D L K+ +V++AY LF K+     
Sbjct: 430 VDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGH 489

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT-------------------- 243
            A+ + Y  +   + +  R     ++ KE++ RG  P+LT                    
Sbjct: 490 NANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRM 549

Query: 244 ---------------TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
                          +Y+I++ G  +AGQ  E    F  MK++   +D   Y  +V GF 
Sbjct: 550 IFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFC 609

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G++ +A  + + M    V P+VATY A++  L K D ++ A ++FEE   KG   N  
Sbjct: 610 KSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVV 669

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            Y+ +I G    G ++ A   +  M      PNV T+N L+     A EI   L  F+ M
Sbjct: 670 LYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSM 729

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
               C PN  TY+ILI+ +   +K +   V  +   +M  +G +P   T+  +++GL  +
Sbjct: 730 KEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQ---DMQKQGLVPNVVTYTTMISGLAKV 786

Query: 469 GN 470
           GN
Sbjct: 787 GN 788



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 149/278 (53%), Gaps = 1/278 (0%)

Query: 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVIS 209
           AG+ ++   IF  +  +G    + S++ ++  L K  +  +  N+F   + + F  D  +
Sbjct: 541 AGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARA 600

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           YN + +G+C   + +KA E+L+EM ++ + P + TY  ++ G  +  +++EA+  F E K
Sbjct: 601 YNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAK 660

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
            +  E++VV Y++++ GFG VG I  A  + + M+  G+ P+V T+N+++  L K + + 
Sbjct: 661 SKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEIN 720

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
            A++ F+ M      PN+ TY+++I GLC   +  +A  F   M+     PNV TY  +I
Sbjct: 721 EALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMI 780

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
                 G I     LFE+  +   +P+  ++N LI  M
Sbjct: 781 SGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGM 818



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 192/420 (45%), Gaps = 56/420 (13%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAII-AER--------------YVSAGKADRAVKIFLSMHE 166
           +W L    K+  LG  ++ FA + AER              Y SAG+ + A K+   + E
Sbjct: 291 IWVLC---KAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRE 347

Query: 167 HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKA 226
            GC  S+ SFN+IL  L K++KV++A +LF+V +   + +  +YN+I +  CL  R  +A
Sbjct: 348 RGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGRVEEA 407

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
             +L EM    L PNL T NI++    +A ++EEA++ F    +R C  D VTY +++ G
Sbjct: 408 YRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDG 467

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL--------------------CKKD 326
            G  G++  A  +F+ M++ G   +   Y ++I+                      CK D
Sbjct: 468 LGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPD 527

Query: 327 ---------------SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
                           VE   ++FE++   G++P+  +Y+++I GL   G+         
Sbjct: 528 LTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFH 587

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
            MK      + + YN ++  FC +G++ +  E+ E+M      P + TY  ++  +    
Sbjct: 588 AMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGL---A 644

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           K D L  A  L  E   +G       ++ +++G   +G    A  IL    + G  P  +
Sbjct: 645 KIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVY 704



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 174/363 (47%), Gaps = 5/363 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           SF+  +    + R      +L   MK     P   T+ II +     G+ + A +I   M
Sbjct: 356 SFNSILTCLGKKRKVDEALSLFEVMKK-DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEM 414

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
                  +L + N ++D LCK +K+E+AY +F+    +    D ++Y  + +G     + 
Sbjct: 415 EHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQV 474

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           ++A  + ++M+D G N N   Y  +++ +F  G+ E+  + F E+ +R C+ D+    T 
Sbjct: 475 DEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTY 534

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +      GE+++ R +F+ + + G LP V +Y+ +I  L K         +F  M  +G+
Sbjct: 535 MDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGF 594

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
             ++  YN V+ G C +G++ +A E +  MK+   +P V TY  ++        ++    
Sbjct: 595 ALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYM 654

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           LFE+  S     N+  Y+ LI       + D+  +   +L EM+ +G  P  +T+N +L+
Sbjct: 655 LFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYL---ILEEMMKKGLTPNVYTWNSLLD 711

Query: 464 GLL 466
            L+
Sbjct: 712 ALV 714



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 173/364 (47%), Gaps = 5/364 (1%)

Query: 126 VHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185
           V  M+ L   P    + ++      A + +RA+++   M E G    ++ F T++  L +
Sbjct: 167 VAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAR 226

Query: 186 EKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
           E +V  A  L    +G   + D++ YNV  + +      + A +   E+  +GL P+  +
Sbjct: 227 EGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVS 286

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           Y  ++    +AG++ EA   F +M+  +       Y T++ G+G  G  + A  + + + 
Sbjct: 287 YTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLR 346

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
             G +PSV ++N+++  L KK  V+ A+ +FE M  K   PNS+TYN++I  LC  G +E
Sbjct: 347 ERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVM-KKDAEPNSSTYNIIIDMLCLGGRVE 405

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
            A   +  M+     PN+ T NI++   C A ++E   ++FE      C P+  TY  LI
Sbjct: 406 EAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLI 465

Query: 425 SSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484
             +  + + D+   A +L  +M+D G       +  ++    + G +    +I +   R 
Sbjct: 466 DGLGKKGQVDE---AYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRR 522

Query: 485 GRLP 488
           G  P
Sbjct: 523 GCKP 526



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 150/320 (46%), Gaps = 1/320 (0%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           ++S    P  ++++I+      AG+A     IF +M + G      ++N ++D  CK  K
Sbjct: 554 IRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGK 613

Query: 189 VEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           V KAY + +  + K  +  V +Y  I +G   + R ++A  + +E   +G+  N+  Y+ 
Sbjct: 614 VHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSS 673

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ G+ + G+I+EA+    EM K+    +V T+ +++       EI  A   F  M    
Sbjct: 674 LIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMK 733

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
             P+  TY+ +I  LC+      A + +++M  +G +PN  TY  +I GL   G +  A 
Sbjct: 734 CPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAY 793

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
               R K +   P+  ++N LI    +A       ++FE+     C  N+ +   L+ ++
Sbjct: 794 SLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQVFEETRLRGCRINIKSCISLLDAL 853

Query: 428 FVRKKSDDLLVAGKLLIEMV 447
              +  +   + G +L E+ 
Sbjct: 854 NKSECLEQAAIVGAVLREIA 873



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 166/359 (46%), Gaps = 7/359 (1%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
           AR         LV  +K   L P    + +  + +  AG  D A K F  +   G +   
Sbjct: 225 AREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDD 284

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKAD-VISYNVIANGWCLVKRTNKALEVLKE 232
            S+ +++ +LCK  ++ +A  LF     +       +YN +  G+    R   A ++L+ 
Sbjct: 285 VSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLER 344

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           + +RG  P++ ++N +L    +  +++EA   F E+ K+  E +  TY  I+    + G 
Sbjct: 345 LRERGCIPSVVSFNSILTCLGKKRKVDEALSLF-EVMKKDAEPNSSTYNIIIDMLCLGGR 403

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           ++ A  + D M +  + P++ T N M+  LCK   +E A  +FE    +G  P+  TY  
Sbjct: 404 VEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCS 463

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           +I GL   G+++ A     +M D     N   Y  LIR F   G  E G ++F+++    
Sbjct: 464 LIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRG 523

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV-DRGFMPRKFTFNRVLNGLLLIGN 470
           C P+L   N  +  +F   + +     G+++ E +   GF+P   +++ +++GL   G 
Sbjct: 524 CKPDLTLLNTYMDCVFKAGEVEK----GRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQ 578



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 142/333 (42%), Gaps = 41/333 (12%)

Query: 183 LCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           L + ++++ A     V R  KF+    +Y V+       +R  +ALE+L++M + G    
Sbjct: 154 LVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVG 213

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           +  +  +++   R GQ+ +A     E+K    E D+V Y   +  FG  G +  A   F 
Sbjct: 214 VHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFH 273

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            +   G+ P   +Y +MI VLCK   +  A  +F +M  +  +P +  YN +I G    G
Sbjct: 274 ELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAG 333

Query: 362 EMERALEFVGRMKDDEC----------------------------------EPNVQTYNI 387
             E A + + R+++  C                                  EPN  TYNI
Sbjct: 334 RFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNI 393

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           +I   C  G +E    + ++M      PNL T NI++  +   +K ++   A K+     
Sbjct: 394 IIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEE---AYKIFESAS 450

Query: 448 DRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
            RG  P   T+  +++GL   G +G   E  RL
Sbjct: 451 QRGCNPDCVTYCSLIDGL---GKKGQVDEAYRL 480



 Score = 46.6 bits (109), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 32/158 (20%), Positives = 68/158 (43%), Gaps = 1/158 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  +D   +  +          MK +   P   T++I+        K ++A   +  M
Sbjct: 705 TWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDM 764

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFK-ADVISYNVIANGWCLVKRT 223
            + G   ++ ++ T++  L K   +  AY+LF+ F+      D  S+N +  G     R 
Sbjct: 765 QKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRA 824

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
            +A +V +E   RG   N+ +   +L    ++  +E+A
Sbjct: 825 MEAYQVFEETRLRGCRINIKSCISLLDALNKSECLEQA 862


>gi|357167655|ref|XP_003581269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 587

 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 167/344 (48%), Gaps = 9/344 (2%)

Query: 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF 196
           T  T++ +A+ Y   G+ D A ++   M       S  ++N ++  LC   +V  A  L 
Sbjct: 119 TAVTYSALADGYCRVGRLDEARRVVDGMP---VLPSAYAYNPLMHALCVRGQVRDALVLL 175

Query: 197 K--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
              ++RG    DV++YN++    C  +   +A+E++  M   G  P   TYN+++ G  R
Sbjct: 176 DNMLYRG-CAPDVVTYNILLEAACKGRGYRQAMELIDLMRVEGCTPTNVTYNVIMDGMCR 234

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G ++ A      +    C  + V Y T++ G    G  +    +   M +    PS AT
Sbjct: 235 EGDVDYARELLNSLPSYGCTPNTVNYNTVLKGLRTAGRWEDVEELIAEMFSENCPPSEAT 294

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
            + +I  LC++   + AI + E+M       N  TYN V+ GLC  G ++ AL  +  M+
Sbjct: 295 LSVVISSLCQEGLFQRAIRLLEKMSKHDCTANIVTYNAVVSGLCEQGHVDGALYLLSNMQ 354

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
            D C+PN+ TYNIL++  C+A   E   +L  KM    CLP++ T+N +I  +  +  + 
Sbjct: 355 TDGCKPNIFTYNILVKGLCNAERWEDAEDLMAKMSQTDCLPDILTFNTIIGFLCQKGLT- 413

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
             + A ++  +M ++G  P   T++ V+ GL   G    + E+L
Sbjct: 414 --MQAVEVFKQMPEKGCCPNSVTYSSVIEGLAKTGKMEQSLELL 455



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 102/393 (25%), Positives = 181/393 (46%), Gaps = 10/393 (2%)

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           YA++P    HA+ +  ++RD      L+  M      P   T+ I+ E         +A+
Sbjct: 153 YAYNP--LMHALCVRGQVRD---ALVLLDNMLYRGCAPDVVTYNILLEAACKGRGYRQAM 207

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGW 217
           ++   M   GC  +  ++N I+D +C+E  V+ A  L           + ++YN +  G 
Sbjct: 208 ELIDLMRVEGCTPTNVTYNVIMDGMCREGDVDYARELLNSLPSYGCTPNTVNYNTVLKGL 267

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
               R     E++ EM      P+  T ++V+    + G  + A R   +M K  C  ++
Sbjct: 268 RTAGRWEDVEELIAEMFSENCPPSEATLSVVISSLCQEGLFQRAIRLLEKMSKHDCTANI 327

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           VTY  +V G    G +  A  +   M   G  P++ TYN +++ LC  +  E+A  +  +
Sbjct: 328 VTYNAVVSGLCEQGHVDGALYLLSNMQTDGCKPNIFTYNILVKGLCNAERWEDAEDLMAK 387

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M     +P+  T+N +I  LC  G   +A+E   +M +  C PN  TY+ +I      G+
Sbjct: 388 MSQTDCLPDILTFNTIIGFLCQKGLTMQAVEVFKQMPEKGCCPNSVTYSSVIEGLAKTGK 447

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           +E+ LEL  +MGS    P ++ Y++L   +    + D L+ A +++ ++ D G  P+   
Sbjct: 448 MEQSLELLNEMGSKGFNPEIN-YHLLAECL---NEEDKLVEAIQMVHKLQDTGISPQAVL 503

Query: 458 FNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
           +N +L GL   G    A +IL      G +P +
Sbjct: 504 YNTILLGLCRNGKTDQAIDILSNMVSDGCMPDE 536



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 165/359 (45%), Gaps = 37/359 (10%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ++ A + R YR    L+  M+     PT  T+ +I +     G  D A ++  S+
Sbjct: 189 TYNILLEAACKGRGYRQAMELIDLMRVEGCTPTNVTYNVIMDGMCREGDVDYARELLNSL 248

Query: 165 HEHGCRQSLNSFNTIL-----------------------------------DLLCKEKKV 189
             +GC  +  ++NT+L                                     LC+E   
Sbjct: 249 PSYGCTPNTVNYNTVLKGLRTAGRWEDVEELIAEMFSENCPPSEATLSVVISSLCQEGLF 308

Query: 190 EKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
           ++A  L  K+ +    A++++YN + +G C     + AL +L  M   G  PN+ TYNI+
Sbjct: 309 QRAIRLLEKMSKHDCTANIVTYNAVVSGLCEQGHVDGALYLLSNMQTDGCKPNIFTYNIL 368

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           +KG   A + E+A     +M +  C  D++T+ TI+      G   +A  VF  M   G 
Sbjct: 369 VKGLCNAERWEDAEDLMAKMSQTDCLPDILTFNTIIGFLCQKGLTMQAVEVFKQMPEKGC 428

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
            P+  TY+++I+ L K   +E ++ +  EM  KG+ P    Y+++   L    ++  A++
Sbjct: 429 CPNSVTYSSVIEGLAKTGKMEQSLELLNEMGSKGFNP-EINYHLLAECLNEEDKLVEAIQ 487

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
            V +++D    P    YN ++   C  G+ ++ +++   M S  C+P+  TY+ILI  +
Sbjct: 488 MVHKLQDTGISPQAVLYNTILLGLCRNGKTDQAIDILSNMVSDGCMPDESTYSILIQGL 546



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 165/325 (50%), Gaps = 10/325 (3%)

Query: 92  ILSYHPTYAHSPSSFDH-----AIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAE 146
           +L+  P+Y  +P++ ++      +  A R  D   V  L+  M S +  P++ T +++  
Sbjct: 244 LLNSLPSYGCTPNTVNYNTVLKGLRTAGRWED---VEELIAEMFSENCPPSEATLSVVIS 300

Query: 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA-YNLFKVFRGKFKA 205
                G   RA+++   M +H C  ++ ++N ++  LC++  V+ A Y L  +     K 
Sbjct: 301 SLCQEGLFQRAIRLLEKMSKHDCTANIVTYNAVVSGLCEQGHVDGALYLLSNMQTDGCKP 360

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           ++ +YN++  G C  +R   A +++ +M      P++ T+N ++    + G   +A   F
Sbjct: 361 NIFTYNILVKGLCNAERWEDAEDLMAKMSQTDCLPDILTFNTIIGFLCQKGLTMQAVEVF 420

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
            +M ++ C  + VTY++++ G    G+++++  + + M + G  P +  Y+ + + L ++
Sbjct: 421 KQMPEKGCCPNSVTYSSVIEGLAKTGKMEQSLELLNEMGSKGFNPEI-NYHLLAECLNEE 479

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
           D +  AI +  ++   G  P +  YN ++ GLC  G+ ++A++ +  M  D C P+  TY
Sbjct: 480 DKLVEAIQMVHKLQDTGISPQAVLYNTILLGLCRNGKTDQAIDILSNMVSDGCMPDESTY 539

Query: 386 NILIRYFCDAGEIERGLELFEKMGS 410
           +ILI+     G ++   EL   + S
Sbjct: 540 SILIQGLAHEGYMKEARELLSTLSS 564



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 145/317 (45%), Gaps = 11/317 (3%)

Query: 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVI 208
           V  G+ D A+++  S     C   +   N ++  LC+  +   A  + +       A  +
Sbjct: 67  VHRGELDAALRVVESSL---CPPDVALANRLVRDLCRRGRPADAARVVEACGSA--ATAV 121

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           +Y+ +A+G+C V R ++A  V+  M    + P+   YN ++      GQ+ +A      M
Sbjct: 122 TYSALADGYCRVGRLDEARRVVDGM---PVLPSAYAYNPLMHALCVRGQVRDALVLLDNM 178

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
             R C  DVVTY  ++         ++A  + D M   G  P+  TYN ++  +C++  V
Sbjct: 179 LYRGCAPDVVTYNILLEAACKGRGYRQAMELIDLMRVEGCTPTNVTYNVIMDGMCREGDV 238

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           + A  +   +   G  PN+  YN V++GL   G  E   E +  M  + C P+  T +++
Sbjct: 239 DYARELLNSLPSYGCTPNTVNYNTVLKGLRTAGRWEDVEELIAEMFSENCPPSEATLSVV 298

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           I   C  G  +R + L EKM    C  N+ TYN ++S +  +   D  L    LL  M  
Sbjct: 299 ISSLCQEGLFQRAIRLLEKMSKHDCTANIVTYNAVVSGLCEQGHVDGALY---LLSNMQT 355

Query: 449 RGFMPRKFTFNRVLNGL 465
            G  P  FT+N ++ GL
Sbjct: 356 DGCKPNIFTYNILVKGL 372



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 95/203 (46%), Gaps = 9/203 (4%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+ +M      P   TF  I       G   +AV++F  M E GC  +  +++++++ L 
Sbjct: 384 LMAKMSQTDCLPDILTFNTIIGFLCQKGLTMQAVEVFKQMPEKGCCPNSVTYSSVIEGLA 443

Query: 185 KEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
           K  K+E++  L      K     I+Y+++A       +  +A++++ ++ D G++P    
Sbjct: 444 KTGKMEQSLELLNEMGSKGFNPEINYHLLAECLNEEDKLVEAIQMVHKLQDTGISPQAVL 503

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           YN +L G  R G+ ++A      M    C  D  TY+ ++ G    G +K AR       
Sbjct: 504 YNTILLGLCRNGKTDQAIDILSNMVSDGCMPDESTYSILIQGLAHEGYMKEARE------ 557

Query: 305 NGGVLPSVATYNAMIQVLCKKDS 327
              +L ++++ + ++  L K D+
Sbjct: 558 ---LLSTLSSRDVIVDNLIKNDA 577


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 154/278 (55%), Gaps = 6/278 (2%)

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           DV++YN + NG C  +R   A  +L EM +RG+ P+L T+  ++ GY   G++++A + F
Sbjct: 50  DVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLF 109

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
             M  ++   D+VTY T++ G    G++ +A +++D M +  + P+  TY+ +I   C+K
Sbjct: 110 DTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEK 169

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
             VE+A    +EM+ KG +PN  TYN +I+G C +G + +  +F+ +M  ++  P++ TY
Sbjct: 170 GQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITY 229

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           N LI  +    ++    +L   M      P++ TYN+LI+   V     +   AG +  +
Sbjct: 230 NTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQE---AGWIFEK 286

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           M  +G  P ++T+  ++NG +  GN   +KE  +L   
Sbjct: 287 MCAKGIEPDRYTYMSMINGHVTAGN---SKEAFQLHDE 321



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 172/329 (52%), Gaps = 4/329 (1%)

Query: 126 VHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185
           +  M+   L P    + ++   +  AG    A+++   M   GC   + ++NT+L+ LCK
Sbjct: 4   LREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCK 63

Query: 186 EKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
           E+++  A  L    R +    D+ ++  + +G+C+  + +KAL++   M+++ L P++ T
Sbjct: 64  ERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVT 123

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           YN ++ G  R G +++A   + +M  R+   + VTY+ ++      G+++ A    D M+
Sbjct: 124 YNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMI 183

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
           N G+LP++ TYN++I+  C+  +V       ++M+     P+  TYN +I G     +M 
Sbjct: 184 NKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMH 243

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
            A + +  M+ ++ +P+V TYN+LI  F   G ++    +FEKM +    P+  TY  +I
Sbjct: 244 DAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMI 303

Query: 425 SSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
           +       S +   A +L  EM+ RGF P
Sbjct: 304 NGHVTAGNSKE---AFQLHDEMLQRGFAP 329



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 150/286 (52%), Gaps = 3/286 (1%)

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           D + Y ++  G+C     + AL V  EMV  G  P++ TYN +L G  +  ++ +A    
Sbjct: 15  DGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLL 74

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
            EM++R    D+ T+TT++HG+ + G++ +A  +FD M+N  + P + TYN +I  +C++
Sbjct: 75  NEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQ 134

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
             ++ A  ++++M  +   PN  TY+++I   C  G++E A  F+  M +    PN+ TY
Sbjct: 135 GDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTY 194

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           N +I+ +C +G + +G +  +KM      P+L TYN LI       K D +  A KLL  
Sbjct: 195 NSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYI---KEDKMHDAFKLLNM 251

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           M      P   T+N ++NG  + GN   A  I       G  P ++
Sbjct: 252 MEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRY 297



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 131/250 (52%), Gaps = 1/250 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L++ M+   + P   TF  +   Y   GK D+A+++F +M     R  + ++NT++D +C
Sbjct: 73  LLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMC 132

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           ++  ++KA +L+     +    + ++Y+++ +  C   +   A   L EM+++G+ PN+ 
Sbjct: 133 RQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIM 192

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN ++KGY R+G + +  +F  +M   K   D++TY T++HG+    ++  A  + + M
Sbjct: 193 TYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMM 252

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
               V P V TYN +I       +V+ A  +FE+M  KG  P+  TY  +I G    G  
Sbjct: 253 EKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNS 312

Query: 364 ERALEFVGRM 373
           + A +    M
Sbjct: 313 KEAFQLHDEM 322



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 97/208 (46%), Gaps = 1/208 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   R  D      L   M S  + P   T++I+ + +   G+ + A      M
Sbjct: 123 TYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEM 182

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRT 223
              G   ++ ++N+I+   C+   V K    L K+   K   D+I+YN + +G+    + 
Sbjct: 183 INKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKM 242

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A ++L  M    + P++ TYN+++ G+   G ++EA   F +M  +  E D  TY ++
Sbjct: 243 HDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSM 302

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPS 311
           ++G    G  K A  + D M+  G  P 
Sbjct: 303 INGHVTAGNSKEAFQLHDEMLQRGFAPD 330


>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Glycine max]
          Length = 615

 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 167/343 (48%), Gaps = 4/343 (1%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           W L   +      P    F ++   +  AG    A  +F  + + G R ++ SFNT++  
Sbjct: 233 WALYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISG 292

Query: 183 LCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
            CK   VE+ + L  V   +    DV +++ + NG C   R ++   +  EM  RGL PN
Sbjct: 293 CCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPN 352

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
             T+  ++ G  + G+++ A + F  M  +    D+VTY  +++G   VG++K AR + +
Sbjct: 353 GVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVN 412

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M   G+ P   T+  +I   CK   +E+A+ +   MV +G   +   +  +I GLC  G
Sbjct: 413 EMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREG 472

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
            +  A   +  M     +P+  TY ++I  FC  G+++ G +L ++M S   +P + TYN
Sbjct: 473 RVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYN 532

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
            L++ +    K   +  A  LL  M++ G  P   T+N +L+G
Sbjct: 533 ALMNGLC---KQGQMKNAKMLLDAMLNVGVAPNDITYNILLDG 572



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 157/338 (46%), Gaps = 4/338 (1%)

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVI 213
           +R+  ++L + + G    +  FN ++   CK   V  A  +F ++ +   +  V+S+N +
Sbjct: 230 ERSWALYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTL 289

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
            +G C      +   +   M   G+ P++ T++ ++ G  + G+++E    F EM  R  
Sbjct: 290 ISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGL 349

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
             + VT+TT++ G    G++  A   F  M+  GV P + TYNA+I  LCK   ++ A  
Sbjct: 350 VPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARR 409

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           +  EM   G  P+  T+  +I G C  G+ME ALE   RM ++  E +   +  LI   C
Sbjct: 410 LVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLC 469

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
             G +     +   M S    P+  TY ++I       K  D+ +  KLL EM   G +P
Sbjct: 470 REGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFC---KKGDVKMGFKLLKEMQSDGHVP 526

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
              T+N ++NGL   G    AK +L      G  P   
Sbjct: 527 GVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDI 564



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 134/286 (46%), Gaps = 1/286 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           SF+  I    +  D    + L   M+S  + P   TF+ +       G+ D    +F  M
Sbjct: 285 SFNTLISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEM 344

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
              G   +  +F T++D  CK  KV+ A   F++   +  + D+++YN + NG C V   
Sbjct: 345 CGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDL 404

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A  ++ EM   GL P+  T+  ++ G  + G +E A      M +   E+D V +T +
Sbjct: 405 KEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTAL 464

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G    G +  A  +   M++ G  P   TY  +I   CKK  V+    + +EM   G+
Sbjct: 465 ISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGH 524

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
           +P   TYN ++ GLC  G+M+ A   +  M +    PN  TYNIL+
Sbjct: 525 VPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITYNILL 570



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 150/335 (44%), Gaps = 28/335 (8%)

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNL--FKVFRGKFKADVISYNVIANGWCLVKRTNKAL 227
           R +L+S+ T+L  LC  + + +A++L  F V R    +    ++ I          + ++
Sbjct: 116 RHTLHSYCTMLHFLCLHRMLPQAHSLVSFLVSRKGTNSASTLFSSILRTMPRHHHHHHSV 175

Query: 228 -----EVLKEMVDRGLNPN-LTTYNIVLKGYF-----------------RAGQIEEAWRF 264
                 ++   VD G  P+ +  + +V K  F                 R  +IE +W  
Sbjct: 176 GLVFDALISAYVDSGFTPDAVQCFRLVTKNKFPVPIRGCENLLRRVVRLRPVEIERSWAL 235

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
           +LE+        +  +  ++HGF   G++  AR VFD +   G+ P+V ++N +I   CK
Sbjct: 236 YLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCK 295

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
              VE    +   M  +G  P+  T++ +I GLC  G ++        M      PN  T
Sbjct: 296 SGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVT 355

Query: 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLI 444
           +  LI   C  G+++  L+ F+ M +    P+L TYN LI+ +    K  DL  A +L+ 
Sbjct: 356 FTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLC---KVGDLKEARRLVN 412

Query: 445 EMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           EM   G  P K TF  +++G    G+   A EI R
Sbjct: 413 EMTASGLKPDKITFTTLIDGCCKDGDMESALEIKR 447



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 96/217 (44%), Gaps = 4/217 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  I+   ++ D +    LV+ M +  L P + TF  + +     G  + A++I   M
Sbjct: 390 TYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRM 449

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
            E G      +F  ++  LC+E +V  A  +   +    FK D  +Y ++ + +C     
Sbjct: 450 VEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDV 509

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
               ++LKEM   G  P + TYN ++ G  + GQ++ A      M       + +TY  +
Sbjct: 510 KMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITYNIL 569

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
           + G    G      ++F+     G++   A+Y A++ 
Sbjct: 570 LDGHSKHGSSVDV-DIFNS--EKGLVTDYASYTALVN 603


>gi|18396782|ref|NP_566222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|79312733|ref|NP_001030630.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546763|sp|Q9M8W9.2|PP211_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04130, mitochondrial; Flags: Precursor
 gi|332640519|gb|AEE74040.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332640520|gb|AEE74041.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 508

 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 113/402 (28%), Positives = 188/402 (46%), Gaps = 13/402 (3%)

Query: 62  CPSLHWTPQLVDQIIKRL---WNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRD 118
           C  ++ +  LV +++ R    W  AL  L +      H    HS  ++D A+D+  + + 
Sbjct: 80  CKRVNLSDGLVHKLLHRFRDDWRSALGILKWAESCKGHK---HSSDAYDMAVDILGKAKK 136

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           +  +   V RM+   L  T  T A I  R+  AG+ + AV IF  + E G  ++  S N 
Sbjct: 137 WDRMKEFVERMRGDKL-VTLNTVAKIMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESMNL 195

Query: 179 ILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           +LD LCKEK+VE+A  +    +     +  ++N+  +GWC   R  +AL  ++EM   G 
Sbjct: 196 LLDTLCKEKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGF 255

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
            P + +Y  +++ Y +  +  + +    EM+      + +TYTTI+       E + A  
Sbjct: 256 RPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALR 315

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE-EMVGKGYMPNSTTYNVVIRGL 357
           V   M   G  P    YN +I  L +   +E A  VF  EM   G   N++TYN +I   
Sbjct: 316 VATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMY 375

Query: 358 CHTGEMERALEFVGRMKDDE-CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP- 415
           CH  E ++A+E +  M+    C P+V TY  L+R     G++    +L ++M +   L  
Sbjct: 376 CHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSL 435

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           +  TY  LI  +    +++    A  L  EM+ +   PR  T
Sbjct: 436 DESTYTFLIQRLC---RANMCEWAYCLFEEMISQDITPRHRT 474


>gi|357113487|ref|XP_003558534.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Brachypodium distachyon]
          Length = 520

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 118/447 (26%), Positives = 208/447 (46%), Gaps = 30/447 (6%)

Query: 31  APLPPAAADPAALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRL-WNHALKALHF 89
           A  P + AD  ++  ++  +  P  +   L   S+  +  L+D ++ R  + H       
Sbjct: 32  AEFPASDADADSVYRIVTGAPTPSAMESALSTSSILLSAPLLDLVLSRFRFAHGDPLRAL 91

Query: 90  FNILSYHPTYAHSPSSF--DHAIDLAARLRDYRTVWTLVHRMKSLSLGP-TQKTFAIIAE 146
             +         +PS F  D AI +  R R +  +W LVH    L     T +T  ++  
Sbjct: 92  SLLSLAVDRCGVAPSPFTLDTAIYVLGRARRFTHMWDLVHSYHRLCPDAVTARTAMVVLG 151

Query: 147 RY-----VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG 201
           R      V    A     + L     G  +S + FN +L  LC+EK +  A N+F   + 
Sbjct: 152 RVAKICSVRETVASFRRLLRLFRGREGT-ESADLFNALLRTLCQEKSMSDARNVFHAHKY 210

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
           +F+ +  ++N++ +GW   K +  A     EM + G++P+L TYN ++    +   +E+A
Sbjct: 211 EFQVNRQTFNILLSGW---KTSEDAEAFFAEMRELGIDPDLVTYNSLIDCQCKNRDVEKA 267

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
           ++   EM++++   DV+TYT+++ G G++G+  +AR++   M   G  P V  YNA I+ 
Sbjct: 268 YKLLDEMREKEISPDVITYTSLIGGLGLIGQPDKARHLLKEMCELGCHPDVPAYNATIRN 327

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
                 + +A  + +EM  KG MPN+TTYN+  R      ++  A     RM+ + C PN
Sbjct: 328 FVIAKRLGDAFALMDEMASKGLMPNATTYNLFFRFYYWAYDIGSAWLLYERMRSERCFPN 387

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISSMFVRKKSDDLLVAG 440
            Q+   ++R     G++ + LEL+  M G+G       ++ ++   +F     D L   G
Sbjct: 388 TQSCMFIVRLCHRHGKVMQALELWSDMVGNG-----FGSFTLVSDVLF-----DLLCDEG 437

Query: 441 KL------LIEMVDRGFMPRKFTFNRV 461
           KL        +MV+ G  P    F R+
Sbjct: 438 KLEEAERCFHQMVELGQKPSSVAFRRI 464



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 65/139 (46%), Gaps = 7/139 (5%)

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
           +N ++R LC    M  A       K  E + N QT+NIL+  +  + + E     F +M 
Sbjct: 185 FNALLRTLCQEKSMSDARNVFHAHKY-EFQVNRQTFNILLSGWKTSEDAE---AFFAEMR 240

Query: 410 SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
                P+L TYN LI     + K+ D+  A KLL EM ++   P   T+  ++ GL LIG
Sbjct: 241 ELGIDPDLVTYNSLID---CQCKNRDVEKAYKLLDEMREKEISPDVITYTSLIGGLGLIG 297

Query: 470 NQGLAKEILRLQSRCGRLP 488
               A+ +L+     G  P
Sbjct: 298 QPDKARHLLKEMCELGCHP 316


>gi|297724885|ref|NP_001174806.1| Os06g0499301 [Oryza sativa Japonica Group]
 gi|52076487|dbj|BAD45366.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|125597333|gb|EAZ37113.1| hypothetical protein OsJ_21452 [Oryza sativa Japonica Group]
 gi|255677074|dbj|BAH93534.1| Os06g0499301 [Oryza sativa Japonica Group]
          Length = 642

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/347 (29%), Positives = 168/347 (48%), Gaps = 6/347 (1%)

Query: 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
           L P + T++ +      AG+ D AV +   M   G   +  +FN +L  + +   V+ A 
Sbjct: 205 LAPDKFTYSTVVSALADAGRVDDAVALVHEMVADGVVAA-EAFNPVLRAMLRAGDVKGAA 263

Query: 194 NLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
            LF   + K       +YNV+ +G  +  R   A+ V++ M   G+ P + TY  V+ G 
Sbjct: 264 KLFGFMQLKGCVPTTATYNVLVHGLLVCGRAGAAMGVMRRMEREGVVPGVMTYGAVVDGL 323

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
            R G++++AW+   EM++     +   Y+T++ GF   GEI  A  V++ MV   V P+V
Sbjct: 324 VRCGRVKDAWKVAEEMERNGLAWNEFVYSTVITGFCKSGEIDCALKVWEAMVASPVRPNV 383

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
             Y+AMI  L     +  A L+F EM+     PN  TY  +I+G    G+  RAL     
Sbjct: 384 VLYSAMIGGLANFGKMTEAELLFREMIHSKCAPNIITYGSIIQGYFKIGDTSRALSVWEE 443

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           M    C PN  +Y+ILI   C+ G ++  + +++ M    C P+   Y  +I  + V   
Sbjct: 444 MIGAGCVPNAVSYSILINGLCNVGRLKDAMMVWKHMLDRGCAPDTIAYTSMIKGLCVSGM 503

Query: 433 SDDLLVAGKLLIEMVDRGFM-PRKFTFNRVLNGLLLIGNQGLAKEIL 478
            D  L   +L  +M+  G   P   ++N +L+GLLL  +   A ++L
Sbjct: 504 VDGGL---RLFYDMLASGHADPDVISYNVLLDGLLLAKDLPRAMDLL 547



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 174/350 (49%), Gaps = 3/350 (0%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           +  +F+  +    R  D +    L   M+     PT  T+ ++    +  G+A  A+ + 
Sbjct: 242 AAEAFNPVLRAMLRAGDVKGAAKLFGFMQLKGCVPTTATYNVLVHGLLVCGRAGAAMGVM 301

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLV 220
             M   G    + ++  ++D L +  +V+ A+ + +   R     +   Y+ +  G+C  
Sbjct: 302 RRMEREGVVPGVMTYGAVVDGLVRCGRVKDAWKVAEEMERNGLAWNEFVYSTVITGFCKS 361

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
              + AL+V + MV   + PN+  Y+ ++ G    G++ EA   F EM   KC  +++TY
Sbjct: 362 GEIDCALKVWEAMVASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMIHSKCAPNIITY 421

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
            +I+ G+  +G+  RA +V++ M+  G +P+  +Y+ +I  LC    +++A++V++ M+ 
Sbjct: 422 GSIIQGYFKIGDTSRALSVWEEMIGAGCVPNAVSYSILINGLCNVGRLKDAMMVWKHMLD 481

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALE-FVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
           +G  P++  Y  +I+GLC +G ++  L  F   +     +P+V +YN+L+     A ++ 
Sbjct: 482 RGCAPDTIAYTSMIKGLCVSGMVDGGLRLFYDMLASGHADPDVISYNVLLDGLLLAKDLP 541

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
           R ++L  +M    C P+  T NI +      ++     + G L++ + DR
Sbjct: 542 RAMDLLNRMLDQGCDPDTVTCNIFLREFGAGERKGREFLEG-LVVRLCDR 590



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 132/298 (44%), Gaps = 12/298 (4%)

Query: 199 FRGKFKADVISYNVIANGWC--LVKRT-----NKALEVLKEMV-DRGLNPNLTTYNIVLK 250
           F G+    ++S+N++    C  LV R      + AL +L E++    L P+  TY+ V+ 
Sbjct: 158 FPGRLAPTLLSFNLLLKCVCSSLVPRDPGRYLDVALRILHEIIPGWDLAPDKFTYSTVVS 217

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
               AG++++A     EM      +    +  ++      G++K A  +F  M   G +P
Sbjct: 218 ALADAGRVDDAVALVHEMVADGV-VAAEAFNPVLRAMLRAGDVKGAAKLFGFMQLKGCVP 276

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           + ATYN ++  L        A+ V   M  +G +P   TY  V+ GL   G ++ A +  
Sbjct: 277 TTATYNVLVHGLLVCGRAGAAMGVMRRMEREGVVPGVMTYGAVVDGLVRCGRVKDAWKVA 336

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
             M+ +    N   Y+ +I  FC +GEI+  L+++E M +    PN+  Y+ +I  +   
Sbjct: 337 EEMERNGLAWNEFVYSTVITGFCKSGEIDCALKVWEAMVASPVRPNVVLYSAMIGGLANF 396

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            K  +   A  L  EM+     P   T+  ++ G   IG+   A  +       G +P
Sbjct: 397 GKMTE---AELLFREMIHSKCAPNIITYGSIIQGYFKIGDTSRALSVWEEMIGAGCVP 451



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/319 (20%), Positives = 132/319 (41%), Gaps = 55/319 (17%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   +D   R    +  W +   M+   L   +  ++ +   +  +G+ D A+K++ +M
Sbjct: 315 TYGAVVDGLVRCGRVKDAWKVAEEMERNGLAWNEFVYSTVITGFCKSGEIDCALKVWEAM 374

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRT 223
                R ++  ++ ++  L    K+ +A  LF+ +   K   ++I+Y  I  G+  +  T
Sbjct: 375 VASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMIHSKCAPNIITYGSIIQGYFKIGDT 434

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           ++AL V +EM+  G  PN  +Y+I++ G    G++++A   +  M  R C  D + YT++
Sbjct: 435 SRALSVWEEMIGAGCVPNAVSYSILINGLCNVGRLKDAMMVWKHMLDRGCAPDTIAYTSM 494

Query: 284 VHGFGVVGEIKRARNVF-DGMVNGGVLPSVATYNAMIQVL-------------------- 322
           + G  V G +     +F D + +G   P V +YN ++  L                    
Sbjct: 495 IKGLCVSGMVDGGLRLFYDMLASGHADPDVISYNVLLDGLLLAKDLPRAMDLLNRMLDQG 554

Query: 323 CKKDSVENAILVFE---------------------------------EMVGKGYMPNSTT 349
           C  D+V   I + E                                  M+ K  +P +  
Sbjct: 555 CDPDTVTCNIFLREFGAGERKGREFLEGLVVRLCDRRRNMAAGEVLMVMLAKYIVPEAPI 614

Query: 350 YNVVIRGLCHTGEMERALE 368
           + +V+R +C    + R ++
Sbjct: 615 WEMVVRDVCRRKRVWRVID 633


>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
          Length = 769

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 115/419 (27%), Positives = 184/419 (43%), Gaps = 55/419 (13%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII------AERYVSAGKAD 155
           +PS F+  +      +DY   + L++RM +    P    + I        E+  S    D
Sbjct: 345 NPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLD 404

Query: 156 RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIA 214
            A KI+  M    C  +  +       LC   K +KA+ L K + R  F  D  +Y+ + 
Sbjct: 405 LAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVI 464

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
              C   +  KA  + +EM   G+ P++ TY I++  + +AG IE+A   F EM+   C 
Sbjct: 465 TFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCS 524

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
             VVTYT ++H +    ++ +A ++F  MV+ G  P+  TY A++  LCK  ++  A  V
Sbjct: 525 PTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEV 584

Query: 335 FEEMVGKG----------------YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           + +++G                    PN  TY  ++ GLC   +++ A E +  M    C
Sbjct: 585 YAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGC 644

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD---- 434
           EPN   Y+ LI  FC AG+I+   E+F +M     LP++ TY  LI  MF   + D    
Sbjct: 645 EPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMK 704

Query: 435 ---------------------DLLV-------AGKLLIEMVDRGFMPRKFTFNRVLNGL 465
                                D L        A KLL  M ++G  P   T+  +++GL
Sbjct: 705 VLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGL 763



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 109/413 (26%), Positives = 182/413 (44%), Gaps = 61/413 (14%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           + +HRM+  S  P   T+  +   ++   +     +I   M   GC  + + FN+++   
Sbjct: 297 SFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSY 356

Query: 184 CKEKKVEKAYNL---------------FKVFRG------------------KFKADVISY 210
           C EK    AY L               + +F G                  K   ++++ 
Sbjct: 357 CNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAA 416

Query: 211 NVIANG---------WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
           N + N           C V + +KA +++KEM+ +G  P+ +TY+ V+     A ++E+A
Sbjct: 417 NCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKA 476

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
           +  F EMK      DV TYT ++  F   G I++A+ +F+ M + G  P+V TY A+I  
Sbjct: 477 FLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHA 536

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM------KD 375
             K   V  A  +F  MV  G  PN  TY  ++ GLC  G + +A E   ++       D
Sbjct: 537 YLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSAD 596

Query: 376 DE----CE------PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
            +    CE      PNV TY  L+   C A +++   EL + M S  C PN   Y+ LI 
Sbjct: 597 SDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALID 656

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
                 K D    A ++ ++M   G++P   T+  +++ +   G   LA ++L
Sbjct: 657 GFCKAGKIDS---AQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVL 706



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 102/469 (21%), Positives = 175/469 (37%), Gaps = 89/469 (18%)

Query: 89  FFNILSYHPTYAHSPSSFD---HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           FF        Y+H+ + +D    A+    R RD   +   +       LG   +   ++ 
Sbjct: 125 FFLWAERQVGYSHTGACYDALADALGFDGRARDAERLLREIGEEDREVLG---RLLNVLV 181

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFK 204
            R    G  + A++    + + G R S  ++N ++ +L    +V+  + + K +    F 
Sbjct: 182 RRCCRGGMWNEALEELGRLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFC 241

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
            D  +    A+  C   R   AL+++ E  D  L+  L T+  ++ G   A   +EA  F
Sbjct: 242 MDRFTVGCFAHALCKEGRWADALDMI-EREDFKLDTVLCTH--MISGLMEASYFDEAMSF 298

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
              M+   C  +VVTY T++ GF    ++   + + + M+  G  P+ + +N+++   C 
Sbjct: 299 LHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCN 358

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVI------------------------------ 354
           +     A  +   M   G  P    YN+ I                              
Sbjct: 359 EKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANC 418

Query: 355 -----------RGLCHTGEMERALEFVGRMKDDECEPNVQTYN----------------- 386
                      R LC  G+ ++A + +  M      P+  TY+                 
Sbjct: 419 VLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFL 478

Query: 387 ------------------ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
                             ILI  FC AG IE+   LFE+M S  C P + TY  LI +  
Sbjct: 479 LFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYL 538

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
              K+  +  A  +   MVD G  P   T+  +++GL   GN   A E+
Sbjct: 539 ---KAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEV 584



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 80/157 (50%), Gaps = 1/157 (0%)

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
           +L P   T+  + +    A K D A ++  +M   GC  +   ++ ++D  CK  K++ A
Sbjct: 608 TLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSA 667

Query: 193 YNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
             +F ++ +  +   V +Y  + +      R + A++VL +M+     PN+ TY  ++ G
Sbjct: 668 QEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDG 727

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
             R G+ E+A +    M+++ C  +VVTYT ++ G G
Sbjct: 728 LCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLG 764



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 74/134 (55%), Gaps = 1/134 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M S    P    +  + + +  AGK D A ++FL M + G   S++++ +++D + 
Sbjct: 635 LLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMF 694

Query: 185 KEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K+ +++ A   L ++ +     +V++Y  + +G C +  + KAL++L  M ++G +PN+ 
Sbjct: 695 KDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVV 754

Query: 244 TYNIVLKGYFRAGQ 257
           TY  ++ G  ++ Q
Sbjct: 755 TYTALIDGLGQSWQ 768


>gi|449456681|ref|XP_004146077.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g53330-like [Cucumis sativus]
          Length = 527

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/419 (26%), Positives = 198/419 (47%), Gaps = 14/419 (3%)

Query: 78  RLWNHALKALHFFNILSYHPTYAHSPS-------SFDHAIDLAARLRDYRTVWTLVHRMK 130
           RL      AL  F  L+ +P+ +  P        S+D  I    R + +  +  ++ ++K
Sbjct: 85  RLQKDPTLALQLF--LNPNPSSSEPPKPFRYSLLSYDLIISKLGRAKMFDEMEEILQQLK 142

Query: 131 SLS-LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV 189
             +   P +  F  +   Y  A   DRA ++F  +    C++++ S N++L  L K +++
Sbjct: 143 QETRFAPHEVIFCNVIAFYGRAHLPDRAFQVFERIPSFRCKRTVKSVNSLLAALLKNRQL 202

Query: 190 EKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL 249
           EK   +F         D  ++N++ +  CL    +    V  EM  RG+ PN+ T+  ++
Sbjct: 203 EKMTQVFVDISNYGSPDACTFNILIHAACLCGDLDAVWGVFDEMQKRGVKPNVVTFGTLI 262

Query: 250 KGYFRAGQIEEAWRFFLEM-KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
            G     +++EA R   +M K    + +   YTT++ GF  VGE+  A  + + MV   V
Sbjct: 263 YGLSLNSKLKEALRLKEDMVKVYMIKPNASIYTTLIKGFCGVGELNFAFKLKEEMVTSNV 322

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
               A Y+ +I  L K    E    +  EM   G  P++ TYN +I G C   ++E A  
Sbjct: 323 KLVSAVYSTLISALFKHGRKEEVSDILREMGENGCKPDTVTYNAIINGHCKENDLESAHR 382

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
            +  M +  C+P+V ++N +I + C  G++++ ++L E M    C P++ +Y I+   + 
Sbjct: 383 VMDEMVEKGCKPDVFSFNTIIGWLCKEGKLDKAMDLLEDMPRRGCPPDVLSYRIIFDGLC 442

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
              +   L  A  +L EM+ +G++PR  + N++++ L    N  L   IL    R  R+
Sbjct: 443 EMMQ---LKEATSILDEMIFKGYVPRNESINKLVDRLCQECNMELLWMILNSLGRGNRM 498



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 174/387 (44%), Gaps = 31/387 (8%)

Query: 72  VDQIIKRLWNHALKALH---FFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWT---- 124
           +++I+++L      A H   F N+++++   AH P       +     R  RTV +    
Sbjct: 134 MEEILQQLKQETRFAPHEVIFCNVIAFY-GRAHLPDRAFQVFERIPSFRCKRTVKSVNSL 192

Query: 125 LVHRMKSLSL--------------GPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCR 170
           L   +K+  L               P   TF I+       G  D    +F  M + G +
Sbjct: 193 LAALLKNRQLEKMTQVFVDISNYGSPDACTFNILIHAACLCGDLDAVWGVFDEMQKRGVK 252

Query: 171 QSLNSFNTILDLLCKEKKVEKAY----NLFKVFRGKFKADVISYNVIANGWCLVKRTNKA 226
            ++ +F T++  L    K+++A     ++ KV+  K  A +  Y  +  G+C V   N A
Sbjct: 253 PNVVTFGTLIYGLSLNSKLKEALRLKEDMVKVYMIKPNASI--YTTLIKGFCGVGELNFA 310

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
            ++ +EMV   +      Y+ ++   F+ G+ EE      EM +  C+ D VTY  I++G
Sbjct: 311 FKLKEEMVTSNVKLVSAVYSTLISALFKHGRKEEVSDILREMGENGCKPDTVTYNAIING 370

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
                +++ A  V D MV  G  P V ++N +I  LCK+  ++ A+ + E+M  +G  P+
Sbjct: 371 HCKENDLESAHRVMDEMVEKGCKPDVFSFNTIIGWLCKEGKLDKAMDLLEDMPRRGCPPD 430

Query: 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
             +Y ++  GLC   +++ A   +  M      P  ++ N L+   C    +E    +  
Sbjct: 431 VLSYRIIFDGLCEMMQLKEATSILDEMIFKGYVPRNESINKLVDRLCQECNMELLWMILN 490

Query: 407 KMGSGVCLPNLDTYNILISSMFVRKKS 433
            +G G  + N+D +  +++  FV K++
Sbjct: 491 SLGRGNRM-NMDMWARVVA--FVYKEN 514



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 156/328 (47%), Gaps = 19/328 (5%)

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFK---ADVISYNVIANGWCLVKRTNKA 226
           R SL S++ I+  L + K  ++   + +  + + +    +VI  NVIA  +      ++A
Sbjct: 112 RYSLLSYDLIISKLGRAKMFDEMEEILQQLKQETRFAPHEVIFCNVIA-FYGRAHLPDRA 170

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
            +V + +        + + N +L    +  Q+E+  + F+++       D  T+  ++H 
Sbjct: 171 FQVFERIPSFRCKRTVKSVNSLLAALLKNRQLEKMTQVFVDISNYGSP-DACTFNILIHA 229

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM-- 344
             + G++     VFD M   GV P+V T+  +I  L     ++ A+ + E+MV K YM  
Sbjct: 230 ACLCGDLDAVWGVFDEMQKRGVKPNVVTFGTLIYGLSLNSKLKEALRLKEDMV-KVYMIK 288

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ----TYNILIRYFCDAGEIER 400
           PN++ Y  +I+G C  GE    L F  ++K++    NV+     Y+ LI      G  E 
Sbjct: 289 PNASIYTTLIKGFCGVGE----LNFAFKLKEEMVTSNVKLVSAVYSTLISALFKHGRKEE 344

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
             ++  +MG   C P+  TYN +I+      K +DL  A +++ EMV++G  P  F+FN 
Sbjct: 345 VSDILREMGENGCKPDTVTYNAIING---HCKENDLESAHRVMDEMVEKGCKPDVFSFNT 401

Query: 461 VLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           ++  L   G    A ++L    R G  P
Sbjct: 402 IIGWLCKEGKLDKAMDLLEDMPRRGCPP 429


>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
 gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
 gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
          Length = 913

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 174/367 (47%), Gaps = 8/367 (2%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           ++FD  +     L   R    LV RM +    P   T+  + +      +AD A  +   
Sbjct: 246 NTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGR 305

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKR 222
           + E     ++  FNT++     E K+ +A  L++    K  + D  +Y+++ +G C + R
Sbjct: 306 VPE----LNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGR 361

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
              A+ +L+EM  +G  PN+ TY IVL  + + G  ++      EM  +   ++   Y  
Sbjct: 362 IGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNG 421

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           +++     G +  A  +   M + G  P + +YN +I  LC  + +E A  +FE ++ +G
Sbjct: 422 MIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEG 481

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
            + N  TYN +I  L   G  + A+     M    C  +V +YN LI+  C  G ++R L
Sbjct: 482 VVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSL 541

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
            L E+M      PN  +YNILIS +   ++  D L   K   +M+++G  P   T+N ++
Sbjct: 542 VLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSK---QMLNQGLAPDIVTYNTLI 598

Query: 463 NGLLLIG 469
           NGL  +G
Sbjct: 599 NGLCKMG 605



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 104/400 (26%), Positives = 185/400 (46%), Gaps = 13/400 (3%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLS-LGPTQKTFAI 143
           +ALH  + L        S  S++  + + AR   +     L  RM     + PT  TF +
Sbjct: 121 RALHLLDQLPRRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGV 180

Query: 144 IAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGK 202
            A      G+AD A+ +   M  HGC      + T++  LC +  V +A  L  ++    
Sbjct: 181 AARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMG 240

Query: 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262
             ADV +++ +  G C + R  +A  ++  M+ +G  P + TY  +L+G  R  Q +EA 
Sbjct: 241 CAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEA- 299

Query: 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322
                M  R  E++VV + T++ G    G++  A  +++ M   G  P   TY+ ++  L
Sbjct: 300 ---RAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGL 356

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
           CK   + +A+ +  EM  KG+ PN  TY +V+   C  G  +     +  M       N 
Sbjct: 357 CKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNS 416

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
           Q YN +I   C  G ++  + L ++M S  C P++ +YN +I  +   ++ ++   A  +
Sbjct: 417 QGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEE---AEHM 473

Query: 443 LIEMVDRGFMPRKFTFNRVLNGLLLIGNQG----LAKEIL 478
              +++ G +    T+N +++ LL  G       LAKE++
Sbjct: 474 FENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMI 513



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 143/290 (49%), Gaps = 1/290 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M+     P   T+ I+   +   G  D    +   M   G   +   +N ++  LC
Sbjct: 368 LLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALC 427

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K+ ++++A  L +  R +    D+ SYN I    C  ++  +A  + + +++ G+  N  
Sbjct: 428 KDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGI 487

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN ++    R G+ ++A R   EM    C +DVV+Y  ++      G + R+  + + M
Sbjct: 488 TYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEM 547

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G+ P+  +YN +I  LCK+  V +A+ + ++M+ +G  P+  TYN +I GLC  G M
Sbjct: 548 AEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWM 607

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
             AL  + ++ ++   P++ TYNILI + C    ++    L  +  + VC
Sbjct: 608 HAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNRAMAAVC 657



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 143/291 (49%), Gaps = 1/291 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T++I+       G+   AV++   M + G   ++ ++  +L   CK    +    L
Sbjct: 344 PDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRAL 403

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            +    K    +   YN +    C   R ++A+ +++EM  +G NP++ +YN ++     
Sbjct: 404 LEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCN 463

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
             Q+EEA   F  + +     + +TY TI+H     G  + A  +   M+  G    V +
Sbjct: 464 NEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVS 523

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN +I+ +CK  +V+ ++++ EEM  KG  PN+ +YN++I  LC    +  ALE   +M 
Sbjct: 524 YNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQML 583

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           +    P++ TYN LI   C  G +   L L EK+ +    P++ TYNILIS
Sbjct: 584 NQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILIS 634



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 116/273 (42%), Gaps = 21/273 (7%)

Query: 224 NKALEVLKEMVDR-GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
            +AL +L ++  R G+ P+  +YN+VL    RA    +A   +  M  R    D V  TT
Sbjct: 120 GRALHLLDQLPRRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHR----DRVPPTT 175

Query: 283 IVHGFGV-----VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
              G        +G    A  +  GM   G +P    Y  +I  LC +  V  A  +  E
Sbjct: 176 FTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNE 235

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M+  G   +  T++ V+RG+C  G +  A   V RM    C P V TY  L++  C   +
Sbjct: 236 MLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQ 295

Query: 398 IERGLELFEKMGSGVCLPNLDT--YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
            +    +  +      +P L+   +N +I       K   L  A +L   M  +G  P  
Sbjct: 296 ADEARAMLGR------VPELNVVLFNTVIGGCLAEGK---LAEATELYETMGLKGCQPDA 346

Query: 456 FTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            T++ +++GL  +G  G A  +LR   + G  P
Sbjct: 347 HTYSILMHGLCKLGRIGSAVRLLREMEKKGFAP 379


>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 665

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 105/442 (23%), Positives = 185/442 (41%), Gaps = 100/442 (22%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           +L+  M      P+  T+ ++ E    +    +A+K+   M   GC  ++ ++N I++ +
Sbjct: 158 SLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGM 217

Query: 184 CKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKR-------------------- 222
           C+E +V+ A  +        F+ D +SY  +  G C  KR                    
Sbjct: 218 CREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNE 277

Query: 223 ---------------TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
                            +A+EVL  M + G   N T  NIV+    + G++++A+ F   
Sbjct: 278 VTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNN 337

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M    C  D ++YTT++ G    G  + A+ + + MV     P+  T+N  I +LC+K  
Sbjct: 338 MGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICILCQKGL 397

Query: 328 VENAILVFEEM------VG--------KGYM------------------PNSTTYNVVIR 355
           ++ AIL+ E+M      VG         G+                   PN+ TY  ++ 
Sbjct: 398 IDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFNSLPCEPNTITYTTLLT 457

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
           GLCH   ++ A E +  M  ++C  NV T+N+L+ +FC  G +E  +EL ++M    C P
Sbjct: 458 GLCHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHGCTP 517

Query: 416 NLDTYNILI--------------------------------SSMFVRKKSDDLLVAGKLL 443
           NL T+N L+                                S + V  + D +  A ++ 
Sbjct: 518 NLITFNTLLDGITEDCNSEEALELLHGLVSKGISLDTITYSSIVDVLSREDRIEEAVQMF 577

Query: 444 IEMVDRGFMPRKFTFNRVLNGL 465
             + D G  P+   +N++L+ L
Sbjct: 578 HAVQDMGMRPKAVMYNKILSAL 599



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/379 (26%), Positives = 181/379 (47%), Gaps = 9/379 (2%)

Query: 103 PSSFDHAIDLAARLRD--YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           PS   + + L A  +   +     ++  M++    P   T+ +I        + D A +I
Sbjct: 170 PSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQI 229

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCL 219
              +  +G +    S+ T+L  LC  K+ E    LF ++       + ++++++   +C 
Sbjct: 230 LNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCR 289

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
                +A+EVL  M + G   N T  NIV+    + G++++A+ F   M    C  D ++
Sbjct: 290 GGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTIS 349

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           YTT++ G    G  + A+ + + MV     P+  T+N  I +LC+K  ++ AIL+ E+M 
Sbjct: 350 YTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICILCQKGLIDQAILLIEQMP 409

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             G      TYN ++ G C  G ++ ALE    +    CEPN  TY  L+   C A  ++
Sbjct: 410 EYGCSVGIVTYNALVNGFCVQGRVDSALELFNSLP---CEPNTITYTTLLTGLCHAERLD 466

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
              EL  +M    C  N+ T+N+L+ S F +K   +  +  +L+ +M++ G  P   TFN
Sbjct: 467 AAAELLAEMMQNDCPLNVVTFNVLV-SFFCQKGFVEEAI--ELVQQMMEHGCTPNLITFN 523

Query: 460 RVLNGLLLIGNQGLAKEIL 478
            +L+G+    N   A E+L
Sbjct: 524 TLLDGITEDCNSEEALELL 542



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 162/360 (45%), Gaps = 11/360 (3%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           + S+ + P   T+  +       G+   A+ +   M    C+ S+ ++  +L+ +CK   
Sbjct: 128 IASMPVPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSG 187

Query: 189 VEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
             +A  +    R K    ++++YNVI NG C   R + A ++L  +   G  P+  +Y  
Sbjct: 188 FGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTT 247

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           VLKG   A + E+    F EM +  C  + VT+  +V  F   G ++RA  V D M   G
Sbjct: 248 VLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHG 307

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
              +    N +I  +CK+  V++A      M   G  P++ +Y  V++GLC  G  E A 
Sbjct: 308 CTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAK 367

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           E +  M    C PN  T+N  I   C  G I++ + L E+M    C   + TYN L++  
Sbjct: 368 ELLNEMVRKNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGF 427

Query: 428 FVRKKSDDLL-VAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR--LQSRC 484
            V+ + D  L +   L  E       P   T+  +L GL        A E+L   +Q+ C
Sbjct: 428 CVQGRVDSALELFNSLPCE-------PNTITYTTLLTGLCHAERLDAAAELLAEMMQNDC 480



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 105/441 (23%), Positives = 178/441 (40%), Gaps = 75/441 (17%)

Query: 91  NILSYHPTYAHSPSSFDHAIDLAA--RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERY 148
            IL+   +Y   P +  +   L      + +  V  L   M   +  P + TF ++   +
Sbjct: 228 QILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFF 287

Query: 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF--KAD 206
              G  +RA+++   M EHGC  +    N +++ +CK+ +V+ A+       G +    D
Sbjct: 288 CRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNM-GSYGCSPD 346

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
            ISY  +  G C   R   A E+L EMV +   PN  T+N  +    + G I++A     
Sbjct: 347 TISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICILCQKGLIDQAILLIE 406

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG------------------------ 302
           +M +  C + +VTY  +V+GF V G +  A  +F+                         
Sbjct: 407 QMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFNSLPCEPNTITYTTLLTGLCHAERLD 466

Query: 303 --------MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
                   M+      +V T+N ++   C+K  VE AI + ++M+  G  PN  T+N ++
Sbjct: 467 AAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHGCTPNLITFNTLL 526

Query: 355 RGLCHTGEMERALEFVGRM--------------------KDDECEPNVQT---------- 384
            G+      E ALE +  +                    ++D  E  VQ           
Sbjct: 527 DGITEDCNSEEALELLHGLVSKGISLDTITYSSIVDVLSREDRIEEAVQMFHAVQDMGMR 586

Query: 385 -----YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA 439
                YN ++   C   E +R ++ F  M S  C+PN  TY ILI  +    +   L  A
Sbjct: 587 PKAVMYNKILSALCKRCETDRAIDFFAHMVSNSCMPNESTYVILIEGL---AREGLLKEA 643

Query: 440 GKLLIEMVDRGFMPRKFTFNR 460
             +L E+  RG + +    +R
Sbjct: 644 RYVLSELCSRGVLSKSLIEDR 664



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 154/325 (47%), Gaps = 8/325 (2%)

Query: 90  FNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWT----LVHRMKSLSLGPTQKTFAIIA 145
           F  L+   +Y  SP +  +   L    R  R  W     L++ M   +  P + TF    
Sbjct: 332 FEFLNNMGSYGCSPDTISYTTVLKGLCRAGR--WEDAKELLNEMVRKNCPPNEVTFNTFI 389

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA 205
                 G  D+A+ +   M E+GC   + ++N +++  C + +V+ A  LF       + 
Sbjct: 390 CILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFNSL--PCEP 447

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           + I+Y  +  G C  +R + A E+L EM+      N+ T+N+++  + + G +EEA    
Sbjct: 448 NTITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELV 507

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
            +M +  C  +++T+ T++ G       + A  +  G+V+ G+     TY++++ VL ++
Sbjct: 508 QQMMEHGCTPNLITFNTLLDGITEDCNSEEALELLHGLVSKGISLDTITYSSIVDVLSRE 567

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
           D +E A+ +F  +   G  P +  YN ++  LC   E +RA++F   M  + C PN  TY
Sbjct: 568 DRIEEAVQMFHAVQDMGMRPKAVMYNKILSALCKRCETDRAIDFFAHMVSNSCMPNESTY 627

Query: 386 NILIRYFCDAGEIERGLELFEKMGS 410
            ILI      G ++    +  ++ S
Sbjct: 628 VILIEGLAREGLLKEARYVLSELCS 652



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 137/305 (44%), Gaps = 35/305 (11%)

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           DV     +    C   RT+ A  VL+     G   ++  YN ++ GY R G+++ A R  
Sbjct: 69  DVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNTLVAGYCRYGRLDAARRLI 128

Query: 266 L--------------------------------EMKKRKCEIDVVTYTTIVHGFGVVGEI 293
                                            +M +R+C+  VVTYT ++         
Sbjct: 129 ASMPVPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGF 188

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
            +A  V D M   G  P++ TYN +I  +C++D V++A  +   +   G+ P++ +Y  V
Sbjct: 189 GQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTV 248

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           ++GLC     E        M ++ C PN  T+++L+R+FC  G +ER +E+ ++M    C
Sbjct: 249 LKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGC 308

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGL 473
             N    NI+I+S+  + + DD   A + L  M   G  P   ++  VL GL   G    
Sbjct: 309 TANTTLCNIVINSICKQGRVDD---AFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWED 365

Query: 474 AKEIL 478
           AKE+L
Sbjct: 366 AKELL 370



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 87/197 (44%), Gaps = 6/197 (3%)

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
           ++  A  + +   + G  P V     +I+ LC++    +A  V     G G   +   YN
Sbjct: 50  DLAEAARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYN 109

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
            ++ G C  G ++ A   +  M      P+  TY  LIR  CD G +   L L + M   
Sbjct: 110 TLVAGYCRYGRLDAARRLIASMP---VPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRR 166

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
            C P++ TY +L+ ++    KS     A K+L EM  +G  P   T+N ++NG+      
Sbjct: 167 ECQPSVVTYTVLLEAVC---KSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRV 223

Query: 472 GLAKEILRLQSRCGRLP 488
             A++IL   S  G  P
Sbjct: 224 DDARQILNRLSSYGFQP 240


>gi|222423065|dbj|BAH19514.1| AT3G04130 [Arabidopsis thaliana]
          Length = 508

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/402 (28%), Positives = 188/402 (46%), Gaps = 13/402 (3%)

Query: 62  CPSLHWTPQLVDQIIKRL---WNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRD 118
           C  ++ +  LV +++ R    W  AL  L +      H    HS  ++D A+D+  + + 
Sbjct: 80  CKRVNLSDGLVHKLLHRFRDDWRSALGILKWAESCKGHK---HSSDAYDMAVDILGKAKK 136

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           +  +   V RM+   L  T  T A I  R+  AG+ + AV IF  + E G  ++  S N 
Sbjct: 137 WDRMKEFVERMRGDKL-VTLNTVAKIMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESMNL 195

Query: 179 ILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           +LD LCKEK+VE+A  +    +     +  ++N+  +GWC   R  +AL  ++EM   G 
Sbjct: 196 LLDTLCKEKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGF 255

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
            P + +Y  +++ Y +  +  + +    EM+      + +TYTTI+       E + A  
Sbjct: 256 RPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALR 315

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE-EMVGKGYMPNSTTYNVVIRGL 357
           V   M   G  P    YN +I  L +   +E A  VF  EM   G   N++TYN +I   
Sbjct: 316 VATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMY 375

Query: 358 CHTGEMERALEFVGRMKDDE-CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP- 415
           CH  E ++A+E +  M+    C P+V TY  L+R     G++    +L ++M +   L  
Sbjct: 376 CHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSL 435

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           +  TY  LI  +    +++    A  L  EM+ +   PR  T
Sbjct: 436 DESTYTFLIQRLC---RANMCEWAYCLFEEMISQDITPRHRT 474


>gi|297807861|ref|XP_002871814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317651|gb|EFH48073.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 459

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/426 (24%), Positives = 187/426 (43%), Gaps = 40/426 (9%)

Query: 58  QTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLR 117
           ++L+   L  T + V ++++     A  +L FFN    +P+Y  +   ++      A  +
Sbjct: 66  RSLNSLRLPVTSEFVFRVLRATSRSANDSLRFFNWARSNPSYTPTSMEYEELAKSLASHK 125

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH-GCRQSLNSF 176
            Y ++W ++ +MK LSL  + +T   I E+Y   G  D+AV++F  + +  GC+Q+++ +
Sbjct: 126 KYESMWKILKQMKDLSLDISGETLCFIIEQYGKNGHVDQAVELFNGVPKTLGCQQTVDVY 185

Query: 177 NTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235
           N +L  LC  K    AY L + + R   K D  +Y ++ NGWC   +  +A E L EM  
Sbjct: 186 NALLHALCDVKMFHGAYALIRRMIRKGLKPDKRTYAILVNGWCSAGKMKEAQEFLDEMSR 245

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
           +G NP     +++++G   AG +E A     +M K     D++T+ T++      GE++ 
Sbjct: 246 KGFNPPARGRDLLIEGLLNAGYLESAKEIVDKMTKGGFVPDILTFNTLIEAISKSGEVEF 305

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
              ++      G+   + TY  +I  + K   ++ A  +    V  G+ P  + Y  +I+
Sbjct: 306 CIEMYYTACKLGLCVDIDTYKTLIPAVSKIGKIDEAFRLLNNCVEDGHKPFPSLYAPIIK 365

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
           G+C  G  + A  F   MK     PN   Y +LI      G+                  
Sbjct: 366 GMCRNGMFDDAFSFFSDMKVKAHPPNRPVYTMLITMCGRGGK------------------ 407

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
                                + A   L+EM + G +P    F+ V +GL   G   LA 
Sbjct: 408 --------------------FVDAANYLVEMTEMGLVPISRCFDMVTDGLKNSGKHDLAM 447

Query: 476 EILRLQ 481
            I +L+
Sbjct: 448 RIEQLE 453



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 75/185 (40%), Gaps = 4/185 (2%)

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
           N    P+   Y  + + L      E+   + ++M       +  T   +I      G ++
Sbjct: 104 NPSYTPTSMEYEELAKSLASHKKYESMWKILKQMKDLSLDISGETLCFIIEQYGKNGHVD 163

Query: 365 RALE-FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           +A+E F G  K   C+  V  YN L+   CD         L  +M      P+  TY IL
Sbjct: 164 QAVELFNGVPKTLGCQQTVDVYNALLHALCDVKMFHGAYALIRRMIRKGLKPDKRTYAIL 223

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           ++      K  +   A + L EM  +GF P     + ++ GLL  G    AKEI+   ++
Sbjct: 224 VNGWCSAGKMKE---AQEFLDEMSRKGFNPPARGRDLLIEGLLNAGYLESAKEIVDKMTK 280

Query: 484 CGRLP 488
            G +P
Sbjct: 281 GGFVP 285


>gi|357129397|ref|XP_003566348.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Brachypodium distachyon]
          Length = 649

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 108/423 (25%), Positives = 198/423 (46%), Gaps = 10/423 (2%)

Query: 41  AALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYA 100
           AA+A ++    D   L  TL   S   +  LV  ++ R  +    +  FF   +    + 
Sbjct: 177 AAIADVMAAGADA-NLEATLSALSPPLSEALVLAVLDRFKHAHRPSRRFFQWAAASDEFE 235

Query: 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRM-KSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           H+P ++   + +  + R + T+  LV  M K+ +L      F I  + + +AG+   AV 
Sbjct: 236 HTPVTYCKMLHILGKARQFETMVALVQEMGKAGAL--CMDAFKIAIKSFAAAGEIKNAVG 293

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCL 219
           +F  M  HG    + SFN +L  L +E   ++A  +F   R ++  D+ SY  +   WC 
Sbjct: 294 VFEMMRVHGFDDGVESFNCLLVALAQEGLGKEAARVFDRMRDQYTPDLRSYTALMLAWCN 353

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
            +   +A  V  +M+++G+ P++  +N ++ G  R  +  EA + F  MK +    +V T
Sbjct: 354 ARNLVEAGRVWNDMLEKGMKPDVVVHNTMIDGLLRGQRRPEAVKMFELMKAKGPPPNVWT 413

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           YT ++      G++  A   F+ M   G  P VATY  ++        ++    + EEM 
Sbjct: 414 YTMLIRDHCKQGKLDMAMRCFEEMQVAGCQPEVATYTCLLVGYGNAKRMDRVTAMLEEMA 473

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR-YFCDAGEI 398
            KG  P+  TYN +I+ L +    + A+    +M     EP + TYN++++ YF      
Sbjct: 474 QKGCPPDGRTYNALIKLLTNRNMPDDAVRIYKKMITKGLEPTIHTYNMMMKSYFLGGRNY 533

Query: 399 ERGLELFEKMG-SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
             G  ++E+M   G+C P++++Y + I+      +  +   A K L EM+ +G    +  
Sbjct: 534 AMGCAVWEEMHRKGIC-PDVNSYTVFINGHIRHGRPAE---ACKFLEEMIQKGMKAPQID 589

Query: 458 FNR 460
           +N+
Sbjct: 590 YNK 592



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIAN 215
           AVK+F  M   G   ++ ++  ++   CK+ K++ A   F+  +    + +V +Y  +  
Sbjct: 395 AVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKLDMAMRCFEEMQVAGCQPEVATYTCLLV 454

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
           G+   KR ++   +L+EM  +G  P+  TYN ++K        ++A R + +M  +  E 
Sbjct: 455 GYGNAKRMDRVTAMLEEMAQKGCPPDGRTYNALIKLLTNRNMPDDAVRIYKKMITKGLEP 514

Query: 276 DVVTYTTIVHGFGVVGE-IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
            + TY  ++  + + G        V++ M   G+ P V +Y   I    +      A   
Sbjct: 515 TIHTYNMMMKSYFLGGRNYAMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPAEACKF 574

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTG------EMERALEFVGR 372
            EEM+ KG       YN         G      E+ + ++F G+
Sbjct: 575 LEEMIQKGMKAPQIDYNKFAADFSKAGKPDILYELAQKVKFTGK 618



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 71/153 (46%), Gaps = 5/153 (3%)

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           TY  M+ +L K    E  + + +EM GK        + + I+     GE++ A+     M
Sbjct: 240 TYCKMLHILGKARQFETMVALVQEM-GKAGALCMDAFKIAIKSFAAAGEIKNAVGVFEMM 298

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
           +    +  V+++N L+      G  +    +F++M      P+L +Y  L   M     +
Sbjct: 299 RVHGFDDGVESFNCLLVALAQEGLGKEAARVFDRMRDQY-TPDLRSYTAL---MLAWCNA 354

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
            +L+ AG++  +M+++G  P     N +++GLL
Sbjct: 355 RNLVEAGRVWNDMLEKGMKPDVVVHNTMIDGLL 387



 Score = 40.8 bits (94), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 2/138 (1%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
           V  ++  M      P  +T+  + +   +    D AV+I+  M   G   +++++N ++ 
Sbjct: 465 VTAMLEEMAQKGCPPDGRTYNALIKLLTNRNMPDDAVRIYKKMITKGLEPTIHTYNMMMK 524

Query: 182 --LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
              L             ++ R     DV SY V  NG     R  +A + L+EM+ +G+ 
Sbjct: 525 SYFLGGRNYAMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPAEACKFLEEMIQKGMK 584

Query: 240 PNLTTYNIVLKGYFRAGQ 257
                YN     + +AG+
Sbjct: 585 APQIDYNKFAADFSKAGK 602


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 173/377 (45%), Gaps = 39/377 (10%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++  M S         F  I        + + A++    M     R +     T++  LC
Sbjct: 475 ILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLC 534

Query: 185 KEKKVEKAYNL-FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           KE K   A  L F++    F A++++ N + +G C      +A+ +LK+M++RG   +  
Sbjct: 535 KEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKI 594

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN ++ G  + G++EE ++   EM K+  E D  TY  ++HG   +G++  A N+++  
Sbjct: 595 TYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNEC 654

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE-------------------------- 337
            +  ++P+V TY  MI   CK D +E    +F E                          
Sbjct: 655 KSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNT 714

Query: 338 ---------MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
                    M  KG  P + TY+ +I G+C+ G ME A   +  M+ +   PNV  Y  L
Sbjct: 715 VEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTAL 774

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           I  +C  G++++ + + ++M S    PN  TY ++I       KS D+  A KLL EMV 
Sbjct: 775 IGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGY---SKSGDMKTAAKLLHEMVG 831

Query: 449 RGFMPRKFTFNRVLNGL 465
           +G +P   T+N + NG 
Sbjct: 832 KGIVPDTVTYNVLTNGF 848



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 159/297 (53%), Gaps = 7/297 (2%)

Query: 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL-FKVFRGKFKADVIS 209
            G    AV++   M E G      ++NT++   CKE KVE+ + L  ++ +   + D  +
Sbjct: 571 TGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFT 630

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           YN++ +G C + + ++A+ +  E   R L PN+ TY +++ GY +A +IEE  + F E+ 
Sbjct: 631 YNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELL 690

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
            +  E++ V Y T++  +   G    A  + D M + G+ P+ ATY+++I  +C    +E
Sbjct: 691 TQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRME 750

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
           +A  + +EM  +G +PN   Y  +I G C  G+M++ +  +  M   +  PN  TY ++I
Sbjct: 751 DAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMI 810

Query: 390 RYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
             +  +G+++   +L  +M G G+ +P+  TYN+L +      K ++    GKLL E
Sbjct: 811 DGYSKSGDMKTAAKLLHEMVGKGI-VPDTVTYNVLTNGFCKEGKIEE----GKLLAE 862



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/366 (26%), Positives = 180/366 (49%), Gaps = 9/366 (2%)

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
           ++ W      + +S  P    F+     +   GK + A+++F  M + G   ++ ++N +
Sbjct: 297 KSYWVFETMRQGVS--PDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNL 354

Query: 180 LDLLCKEKKVEKAYNL-FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           +  LCK   +++A+    K+ +    A +I+Y+V+ NG   +++ N+A  VLKE +++G 
Sbjct: 355 IHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGF 414

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
            PN   YN ++ GY + G + +A R   +M  +    + VT  +I+ GF  +G++++A  
Sbjct: 415 TPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAEC 474

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
           + + M++ G   +   +  +I  LC     E+A+    EM+ +   PN      ++ GLC
Sbjct: 475 ILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLC 534

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLD 418
             G+   A+E   R+ +     N+ T N LI   C  G ++  + L +KM     + +  
Sbjct: 535 KEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKI 594

Query: 419 TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           TYN LIS      K ++     KL  EMV +G  P  FT+N +++G+  IG      E +
Sbjct: 595 TYNTLISGCCKEGKVEE---GFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGK---LDEAV 648

Query: 479 RLQSRC 484
            L + C
Sbjct: 649 NLWNEC 654



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 178/401 (44%), Gaps = 39/401 (9%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           F  AI+   +         L   M+ L + P   T+  +       G  D A +    M 
Sbjct: 316 FSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMV 375

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTN 224
           + G   +L +++ +++ L K +K  +A ++ K      F  + + YN + +G+C +    
Sbjct: 376 KDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLG 435

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
            AL +  +MV +G+NPN  T N +++G+ + GQ+E+A     EM  R   I+   +TTI+
Sbjct: 436 DALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTII 495

Query: 285 H-----------------------------------GFGVVGEIKRARNVFDGMVNGGVL 309
           H                                   G    G+   A  ++  ++  G  
Sbjct: 496 HWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFG 555

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
            ++ T NA+I  LCK  +++ A+ + ++M+ +G++ +  TYN +I G C  G++E   + 
Sbjct: 556 ANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKL 615

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
            G M     EP+  TYN+LI   C  G+++  + L+ +  S   +PN+ TY ++I     
Sbjct: 616 RGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYC- 674

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
             K+D +    KL  E++ +        +N ++      GN
Sbjct: 675 --KADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGN 713



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 128/520 (24%), Positives = 223/520 (42%), Gaps = 53/520 (10%)

Query: 3   ALLRKPPKNHLHFFC-IYRGLSPLTTTSP---APLP----PAAADPAALASLILTSTDPR 54
            LL KP       FC I R L+ +T+ +P   +PLP    P ++D A L S+    ++P 
Sbjct: 73  TLLPKPTP----IFCPIARPLTCVTSAAPHPPSPLPSQNQPPSSDHALLKSVTSILSNP- 127

Query: 55  TLTQTLHCPSL--HWTPQLVDQI---IKRLWNHALKALHFFNILSYHPTYAHSPSSF--- 106
           +L  T  C  L  H +P   D +   ++R  N    AL+FF   S    +  +  S+   
Sbjct: 128 SLDST-QCKQLIPHLSPHQFDSVFFSVRRNVNPK-TALNFFYFASDSCGFRFTLRSYCVL 185

Query: 107 ----------DHAIDLAARLRDYR-TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKAD 155
                       A  L  RL D +  V     + + + +         + E  V+    D
Sbjct: 186 MRSLIVSGFVSPARLLLIRLIDRKLPVLFGDPKNRHIEIASAMADLNEVGESGVAVAAVD 245

Query: 156 ----------------RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
                            A+ +F  +   G   ++ +   +L  L K  ++EK+Y +F+  
Sbjct: 246 LLIHVYCTQFRNVGFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETM 305

Query: 200 RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
           R     DV  ++   N +C   +   A+++  +M   G++PN+ TYN ++ G  + G ++
Sbjct: 306 RQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLD 365

Query: 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319
           EA+RF  +M K      ++TY+ +++G   + +   A +V    +  G  P+   YN +I
Sbjct: 366 EAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLI 425

Query: 320 QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
              CK  ++ +A+ +  +MV KG  PNS T N +I+G C  G+ME+A   +  M      
Sbjct: 426 DGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFS 485

Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA 439
            N   +  +I + C     E  L    +M      PN      L+  +    K  D   A
Sbjct: 486 INPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSD---A 542

Query: 440 GKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
            +L   ++++GF     T N +++GL   GN   A  +L+
Sbjct: 543 VELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLK 582



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 107/234 (45%), Gaps = 4/234 (1%)

Query: 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH 167
           H +    +L +   +W   +  KS  L P   T+ ++ + Y  A K +   K+F  +   
Sbjct: 636 HGMCRIGKLDEAVNLW---NECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQ 692

Query: 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKA 226
               +   +NT++   C+     +A+ L    R K       +Y+ + +G C + R   A
Sbjct: 693 NLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDA 752

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
             ++ EM   GL PN+  Y  ++ GY + GQ+++      EM       + +TYT ++ G
Sbjct: 753 KCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDG 812

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
           +   G++K A  +   MV  G++P   TYN +    CK+  +E   L+ E+ VG
Sbjct: 813 YSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGKLLAEDGVG 866


>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
 gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
          Length = 651

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/383 (28%), Positives = 178/383 (46%), Gaps = 36/383 (9%)

Query: 120 RTVWTLVH-RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           R V  L H R  +    P   T+  +      AGK D A  +   M   GC     +F+T
Sbjct: 59  RVVEALEHFRAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFST 118

Query: 179 ILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
           ++D LCK    E+A+ + +  + RG   +D     +I            A +VL  ++ +
Sbjct: 119 LIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAK 178

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           G  P +  +N+V+ G+ +A  ++ A++    M ++ C  +V T+T ++ G      +  A
Sbjct: 179 GFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEA 238

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
           + + + MV GG  P+V TY+ +I  LCK+  V++A  +F+ M  +   PN  T+N++I G
Sbjct: 239 QQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDG 298

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGVCLP 415
           LC    +E A +   RM++  C P++ TYN LI   C + +++   +LF+ +  SGV   
Sbjct: 299 LCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAA 358

Query: 416 NLDTYNIL---------------ISSMFVRKK-SDDLLVAGKLLIE-------------- 445
           N  TY+ L               I SM V K  S DL     L++E              
Sbjct: 359 NAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELV 418

Query: 446 --MVDRGFMPRKFTFNRVLNGLL 466
             M  +GF PR  T + VL GL 
Sbjct: 419 EEMASKGFPPRVNTLSAVLGGLF 441



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 109/428 (25%), Positives = 203/428 (47%), Gaps = 18/428 (4%)

Query: 73  DQIIKRLWNH------ALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLV 126
           + II+RL N       A K L       + PT       F+  I+   + +D  + + L+
Sbjct: 152 ETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLM----FNLVINGFCKAKDLDSAYKLL 207

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186
             M      P   TF I+      A +   A ++   M   GC  ++ +++T+++ LCK+
Sbjct: 208 EVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQ 267

Query: 187 KKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
            +V+ AY LF++  R     +V+++N++ +G C  KR  +A ++   M + G  P++ TY
Sbjct: 268 GQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITY 327

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEI-DVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           N ++ G  ++ Q++EA++ F  + +      + VTY+T+ HG+  +G +  A  +F  +V
Sbjct: 328 NSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLV 387

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
           + G  P +ATY ++I   CK       + + EEM  KG+ P   T + V+ GL      E
Sbjct: 388 DKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTE 447

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM---GSGVCLPNLDTYN 421
           RA++    M    C  +   YN+++     A +  + L + E++         P+    +
Sbjct: 448 RAIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLEQVIDKRDRKFNPSSSAVD 507

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481
            L+ S+    ++DD   A +LL +M +RGF     ++N +L+GL  +     A ++    
Sbjct: 508 ALVESLCQVGRTDD---AKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAM 564

Query: 482 SRCGRLPR 489
              G  P 
Sbjct: 565 VSAGPAPE 572



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 165/331 (49%), Gaps = 4/331 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P + T+ I+   + SAG  D A+++   M  +G   +     T++  LC   +V +A   
Sbjct: 7   PNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEH 66

Query: 196 FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
           F+        DV++Y  + +  C   + ++A  +L+EM+ RG  P+  T++ ++ G  + 
Sbjct: 67  FRAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKF 126

Query: 256 GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF-GVVGEIKRARNVFDGMVNGGVLPSVAT 314
           G  E+A+R   ++ +R        + TI+         ++ A  V   ++  G  P+V  
Sbjct: 127 GSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLM 186

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           +N +I   CK   +++A  + E M+ KG +PN  T+ ++I GLC    +  A + + +M 
Sbjct: 187 FNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMV 246

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
              C PNV TY+ +I   C  G+++   ELF+ M    C PN+ T+NILI  +   K+ +
Sbjct: 247 TGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIE 306

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           +   A +L   M + G  P   T+N +++GL
Sbjct: 307 E---ARQLYHRMRETGCAPDIITYNSLIDGL 334



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 167/378 (44%), Gaps = 43/378 (11%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
            + L   M+  +  P   T  I+ +    A + + A +++  M E GC   + ++N+++D
Sbjct: 273 AYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLID 332

Query: 182 LLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
            LCK  +V++A+ LF+     G   A+ ++Y+ + +G+  + R   A  +   +VD+G +
Sbjct: 333 GLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFS 392

Query: 240 PNLTTY-----------------------------------NIVLKGYFRAGQIEEAWRF 264
           P+L TY                                   + VL G F     E A + 
Sbjct: 393 PDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQL 452

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG---GVLPSVATYNAMIQV 321
           F  M  R C  D + Y  +V G     +  +A  V + +++       PS +  +A+++ 
Sbjct: 453 FDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLEQVIDKRDRKFNPSSSAVDALVES 512

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           LC+    ++A  +  +M  +G+    ++YN ++ GL      + A +    M      P 
Sbjct: 513 LCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAMVSAGPAPE 572

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
           + T N++I + C A +++   EL ++M    C P+++T N LI       ++D   +A K
Sbjct: 573 ISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRAD---LARK 629

Query: 442 LLIEMVDRGFMPRKFTFN 459
           LL EM + G  P   T +
Sbjct: 630 LLEEMTEAGLEPNDTTHD 647



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 4/136 (2%)

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
           MPN  TY ++IRG    G+++ A++ +  MK +  E N   +  L++  CDAG +   LE
Sbjct: 6   MPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALE 65

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
            F  M    C P++ TY  L+ ++    K D+   A  +L EM+ RG  P   TF+ +++
Sbjct: 66  HFRAMAKD-CAPDVMTYTALVHALCKAGKFDE---AQGMLREMIARGCAPDTVTFSTLID 121

Query: 464 GLLLIGNQGLAKEILR 479
           GL   G++  A  +L 
Sbjct: 122 GLCKFGSEEQAFRVLE 137



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 91/216 (42%), Gaps = 34/216 (15%)

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
           +P+  TY  +I+       ++ AI + EEM   G+  N+  +  +++GLC  G +  ALE
Sbjct: 6   MPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALE 65

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
               M  D C P+V TY  L+   C AG+ +    +  +M +  C P+  T++ LI  + 
Sbjct: 66  HFRAMAKD-CAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLC 124

Query: 429 ---------------------------------VRKKSDDLLVAGKLLIEMVDRGFMPRK 455
                                            +  K + + +A K+L  ++ +GF P  
Sbjct: 125 KFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTV 184

Query: 456 FTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
             FN V+NG     +   A ++L +    G +P  F
Sbjct: 185 LMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVF 220


>gi|115451461|ref|NP_001049331.1| Os03g0208600 [Oryza sativa Japonica Group]
 gi|26006498|gb|AAN77307.1| Hypothetical protein [Oryza sativa Japonica Group]
 gi|108706773|gb|ABF94568.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547802|dbj|BAF11245.1| Os03g0208600 [Oryza sativa Japonica Group]
          Length = 531

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 120/500 (24%), Positives = 222/500 (44%), Gaps = 27/500 (5%)

Query: 8   PPKNHLHFF-CIYRGLSPLTTTSPAP---------LPPAAADPAALASLILTSTDPRTLT 57
           PPK     F  + +   P    +PAP         +  + AD  A+  ++  +  P  + 
Sbjct: 2   PPKPERRLFQYVSKPRRPAREPAPAPEVCGGGGEEVVASDADADAVYRMVTAAPTPSAME 61

Query: 58  QTLHCPSLHWTPQLVDQIIKRL-WNHALKALHFFNILSYHPTYAHSPSSF--DHAIDLAA 114
             L    +  +  L+D +++R  + H         +      +  +PS F  D A+ +  
Sbjct: 62  SALSASGVAISAPLLDLVLRRFRFAHGDPLRALSLLSLALDRHGVAPSPFALDTALYVLG 121

Query: 115 RLRDYRTVWTLVHRMKSL-SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE----HGC 169
           R R +  +W L+   + L     T +T  ++  R          V  F  +       G 
Sbjct: 122 RARRFAHMWDLLRSSRRLVPDAVTPRTAMVVLGRVAKVCSVRETVDSFRRLSRMLRGRGD 181

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEV 229
            Q    FN +L  LC+EK +  A N++   + +FK +  ++N++ +GW   K    A   
Sbjct: 182 DQEGQLFNALLRTLCQEKSMSDARNVYHALKYEFKVNRQTFNILLSGW---KSAEDAEAF 238

Query: 230 LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289
           + EM + G+ P+L TYN ++  + +   +E A++   EM+++    DV+TYT+++ G G+
Sbjct: 239 VAEMRELGVEPDLVTYNSLIDCHCKNRGVENAYKLLDEMREKDISPDVITYTSLIGGLGL 298

Query: 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
           +G+  +A+++   M   G  P V  YN  I+       + +A  + EEM  KG MPN+TT
Sbjct: 299 IGQPDKAKHLLKEMHELGCYPDVPAYNTAIRNFVIAKRLGDAFALMEEMASKGLMPNATT 358

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
           YN+  R      ++  A +   RM+ + C PN Q+   ++R     G + + LEL+  M 
Sbjct: 359 YNLFFRCYYWAYDIGSAWQLYERMRSEGCFPNTQSCMFIVRLCHRHGRVAQALELWSDMV 418

Query: 410 SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
           +          ++L   +    K D+   A +   +M++ G  P    F R+   L+ + 
Sbjct: 419 NNGFGSFTLVSDVLFDLLCDEGKLDE---AERCFHQMIELGQKPSNVAFRRI-KILMQLA 474

Query: 470 NQGLAKEILRLQSRCGRLPR 489
           N+   + I RL ++  +  R
Sbjct: 475 NR--EESIARLTAQMAQFGR 492


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/357 (28%), Positives = 180/357 (50%), Gaps = 5/357 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P + T++ +     + G  +RA+ +F    E G + S+  +NT++  L K+  V +A  L
Sbjct: 354 PDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQL 413

Query: 196 FK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            K +       D+ +YN++ NG C +   + A  +L + + +G  P++ T+N ++ GY +
Sbjct: 414 MKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCK 473

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
              +++A      M       DV+TY T+++G     ++    + F  M+  G  P++ T
Sbjct: 474 QRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIIT 533

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE-FVGRM 373
           YN +I+  CK   V  A+ +F+EM  +G  P+  T   +I GLC  GE+++A E FV   
Sbjct: 534 YNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIE 593

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
           K+ +   +   +NI+I  FC    +    +LF KMG   C P+  TY ++I S     K+
Sbjct: 594 KEYKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYC---KT 650

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
            ++ +A   L+E + +G +P   T  +VLN L +      A  I+ L  + G +P +
Sbjct: 651 GNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVPEE 707



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/406 (26%), Positives = 198/406 (48%), Gaps = 6/406 (1%)

Query: 76  IKRLWNHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLS 133
           I R +    K     N+      Y   PS  S++  +++      +     +  RMK + 
Sbjct: 82  IMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIG 141

Query: 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
           + P   T  I  + +   G+   A+++  +M   GC  +  S+  ++    KE    +AY
Sbjct: 142 IYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAY 201

Query: 194 NLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
           +LF ++ +     D++++N + +  C      ++ ++  +++ RG+ PNL T+NI ++G 
Sbjct: 202 HLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGL 261

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
            R G I+EA R    +       DV++Y T++ GF    ++  A      MVN GV P+ 
Sbjct: 262 CRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNE 321

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            TYN +I   CK   ++NA  +  + + KG++P+  TY+ +I GLC+ G+M RA+     
Sbjct: 322 FTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYE 381

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
             +   + ++  YN L++     G + + L+L + M    C P++ TYN++++ +    K
Sbjct: 382 AMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLC---K 438

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
              L  A  +L + + +G +P  FTFN +++G     N   A EIL
Sbjct: 439 MGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEIL 484



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 175/375 (46%), Gaps = 4/375 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  I +  +  + +    L  ++    + P   TF I  +     G  D A ++  S+
Sbjct: 218 TFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESI 277

Query: 165 HEHGCRQSLNSFNTILDLLCKEKK-VEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRT 223
              G    + S+NT++   CK  K VE    L K+     + +  +YN I NG+C     
Sbjct: 278 VSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMM 337

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
             A ++L++ + +G  P+  TY+ ++ G    G +  A   F E  ++  +  ++ Y T+
Sbjct: 338 QNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTL 397

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           V G    G + +A  +   M+  G  P + TYN ++  LCK   + +A  +  + + KG 
Sbjct: 398 VKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGC 457

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
           +P+  T+N +I G C    M++A+E +  M      P+V TYN L+   C A +++  ++
Sbjct: 458 IPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVD 517

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
            F+ M    C PN+ TYNILI S    +K  +   A +L  EM  RG  P   T   ++ 
Sbjct: 518 TFKAMLEKGCTPNIITYNILIESFCKDRKVSE---AMELFKEMKTRGLTPDIVTLCTLIC 574

Query: 464 GLLLIGNQGLAKEIL 478
           GL   G    A E+ 
Sbjct: 575 GLCSNGELDKAYELF 589



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 113/457 (24%), Positives = 207/457 (45%), Gaps = 35/457 (7%)

Query: 69  PQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHR 128
           P+ V  +I R  N  L AL  FN +     + H+  ++   I+       +  +  ++  
Sbjct: 7   PKHVAAVI-RYQNDPLNALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAE 65

Query: 129 M-KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           M K++     +  +  I   Y   GK   AV +F  M  + C  S+ S+N I+++L +  
Sbjct: 66  MRKNVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYG 125

Query: 188 KVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
              +A+ ++   +      DV ++ +    +C+  R   AL +L  M  +G   N  +Y 
Sbjct: 126 YFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYC 185

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
            V+ G+++     EA+  F EM K+    D++T+  ++H     G ++ +  +F  ++  
Sbjct: 186 AVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKR 245

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           GV P++ T+N  IQ LC+K +++ A  + E +V +G  P+  +YN +I G C   ++  A
Sbjct: 246 GVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEA 305

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
             ++ +M +   EPN  TYN +I  FC AG ++   ++         +P+  TY+ LI+ 
Sbjct: 306 ECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLING 365

Query: 427 M------------------------------FVRKKSDDLLV--AGKLLIEMVDRGFMPR 454
           +                               V+  S   LV  A +L+ +M++ G  P 
Sbjct: 366 LCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPD 425

Query: 455 KFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
            +T+N V+NGL  +G    A  IL      G +P  F
Sbjct: 426 IWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIF 462



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 2/159 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  I+   + R       L   MK+  L P   T   +     S G+ D+A ++F+++
Sbjct: 533 TYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTI 592

Query: 165 H-EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKR 222
             E+    S   FN +++  C +  V  A  LF    G   A D  +Y V+ + +C    
Sbjct: 593 EKEYKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGN 652

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
            + A   L E + +GL P+ TT   VL       ++ EA
Sbjct: 653 IDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEA 691


>gi|357160857|ref|XP_003578899.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Brachypodium distachyon]
          Length = 714

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/338 (29%), Positives = 168/338 (49%), Gaps = 4/338 (1%)

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVI 213
           ++A  + L M   G   ++ ++NT++D L K    E A   F   R K    D+I+YN +
Sbjct: 317 EKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNAEAAQVKFDEMRAKGLLPDLITYNSL 376

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
            NG+C      +AL +  ++   GL P + TYNI++ GY R G +E A R   EM +  C
Sbjct: 377 INGYCKAGNLKQALCLFGDLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDC 436

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
             DV TYT +++G  +V  +   R  FD M++ G+ P    YN  I       ++ NA  
Sbjct: 437 LPDVCTYTILMNGSCMVRNLAMVRIFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQ 496

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           + EEM+ +G   ++ TYNV+I GLC TG ++ A     +M  D    +  TY  LI   C
Sbjct: 497 LREEMMLRGISSDTVTYNVLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHC 556

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
           + G +     +F+ M +    P++ TY I I + + R+   +L +A     +M++ G  P
Sbjct: 557 ERGRLIEAKNIFDGMVASGLSPSVVTYTIFIHT-YCRR--GNLYLAYGWFRKMLEEGVEP 613

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
            + T+N +++ L  +G    A +        G +P ++
Sbjct: 614 NEVTYNVLMHALCRMGRTESAYQHFHEMLERGLVPNKY 651



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 164/341 (48%), Gaps = 8/341 (2%)

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH--GCR 170
           AAR  D R V++    M  L + P+  T+  + + +  AG+ D+AV +   M     GC 
Sbjct: 207 AARWDDMRAVYS---DMLQLGVEPSIFTYNTLLDSFCKAGRMDQAVALLKDMEARAAGCL 263

Query: 171 QSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVL 230
            +  ++N +++ L ++ ++EKA  L  + R   KA   +YN +  G        KA  +L
Sbjct: 264 PNDVTYNVVINGLARKGELEKAAQLVDIMRLSKKASAFTYNPLITGLLARDFVEKAGALL 323

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
            EM + G+ P + TYN ++ G F+ G  E A   F EM+ +    D++TY ++++G+   
Sbjct: 324 LEMENEGIVPTVVTYNTLIDGLFKTGNAEAAQVKFDEMRAKGLLPDLITYNSLINGYCKA 383

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           G +K+A  +F  +   G+ P+V TYN +I   C+   +E A  + EEM  +  +P+  TY
Sbjct: 384 GNLKQALCLFGDLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTY 443

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
            +++ G C    +     F   M     EP+   YN  I      G I    +L E+M  
Sbjct: 444 TILMNGSCMVRNLAMVRIFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMML 503

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
                +  TYN+LI  +    K+  L  A  L ++MV  G 
Sbjct: 504 RGISSDTVTYNVLIDGLC---KTGSLKDAYVLWMKMVTDGL 541



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 153/320 (47%), Gaps = 1/320 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  I+   +  + +    L   +K   LGPT  T+ I+ + Y   G  + A ++   M
Sbjct: 372 TYNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEM 431

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
            E  C   + ++  +++  C  + +      F     K  + D  +YN   +    +   
Sbjct: 432 TEEDCLPDVCTYTILMNGSCMVRNLAMVRIFFDEMLSKGLEPDCFAYNTRISAELTIGAI 491

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
             A ++ +EM+ RG++ +  TYN+++ G  + G +++A+  +++M      +D VTYT +
Sbjct: 492 TNAFQLREEMMLRGISSDTVTYNVLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCL 551

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +H     G +  A+N+FDGMV  G+ PSV TY   I   C++ ++  A   F +M+ +G 
Sbjct: 552 IHAHCERGRLIEAKNIFDGMVASGLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGV 611

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN  TYNV++  LC  G  E A +    M +    PN  TY +LI   C  G     + 
Sbjct: 612 EPNEVTYNVLMHALCRMGRTESAYQHFHEMLERGLVPNKYTYTLLIDGSCKEGNWVHAIR 671

Query: 404 LFEKMGSGVCLPNLDTYNIL 423
           L+ +M      P+  T+N L
Sbjct: 672 LYCEMHQKGIHPDHCTHNAL 691



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 151/339 (44%), Gaps = 4/339 (1%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
            M++  L P   T+  +   Y  AG   +A+ +F  +   G   ++ ++N ++D  C+  
Sbjct: 360 EMRAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYNILIDGYCRLG 419

Query: 188 KVEKAYNL-FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
            +E A  L  ++       DV +Y ++ NG C+V+          EM+ +GL P+   YN
Sbjct: 420 DLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVRNLAMVRIFFDEMLSKGLEPDCFAYN 479

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
             +      G I  A++   EM  R    D VTY  ++ G    G +K A  ++  MV  
Sbjct: 480 TRISAELTIGAITNAFQLREEMMLRGISSDTVTYNVLIDGLCKTGSLKDAYVLWMKMVTD 539

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G+     TY  +I   C++  +  A  +F+ MV  G  P+  TY + I   C  G +  A
Sbjct: 540 GLRLDCVTYTCLIHAHCERGRLIEAKNIFDGMVASGLSPSVVTYTIFIHTYCRRGNLYLA 599

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
             +  +M ++  EPN  TYN+L+   C  G  E   + F +M     +PN  TY +LI  
Sbjct: 600 YGWFRKMLEEGVEPNEVTYNVLMHALCRMGRTESAYQHFHEMLERGLVPNKYTYTLLIDG 659

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
                K  + + A +L  EM  +G  P   T N +  G 
Sbjct: 660 ---SCKEGNWVHAIRLYCEMHQKGIHPDHCTHNALFKGF 695



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 89/180 (49%), Gaps = 6/180 (3%)

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
           + F  M   GV P V   N +++VL      ++   V+ +M+  G  P+  TYN ++   
Sbjct: 180 SAFQEMARHGVAPFVKECNCVLRVLRDAARWDDMRAVYSDMLQLGVEPSIFTYNTLLDSF 239

Query: 358 CHTGEMERALEFVGRM--KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
           C  G M++A+  +  M  +   C PN  TYN++I      GE+E+  +L + M       
Sbjct: 240 CKAGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGELEKAAQLVDIMRLSKKAS 299

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
              TYN LI+ +  R   D +  AG LL+EM + G +P   T+N +++GL   GN   A+
Sbjct: 300 AF-TYNPLITGLLAR---DFVEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNAEAAQ 355



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 83/185 (44%), Gaps = 1/185 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID   +    +  + L  +M +  L     T+  +   +   G+   A  IF  M
Sbjct: 512 TYNVLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAKNIFDGM 571

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
              G   S+ ++   +   C+   +  AY  F K+     + + ++YNV+ +  C + RT
Sbjct: 572 VASGLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVLMHALCRMGRT 631

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
             A +   EM++RGL PN  TY +++ G  + G    A R + EM ++    D  T+  +
Sbjct: 632 ESAYQHFHEMLERGLVPNKYTYTLLIDGSCKEGNWVHAIRLYCEMHQKGIHPDHCTHNAL 691

Query: 284 VHGFG 288
             GFG
Sbjct: 692 FKGFG 696


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 125/480 (26%), Positives = 206/480 (42%), Gaps = 93/480 (19%)

Query: 75  IIKRLWNHALKALH------------FFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTV 122
           I KRL N++    H            F   +   PT   S  +    ID   + R Y  V
Sbjct: 2   IPKRLLNNSSSIAHTQPHSLSDAVSLFHRTIDNDPTSPPSEPACSTLIDNLRKARQYDAV 61

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
            ++ H+M S  + P   + + + E +V+      A  +   M + G   ++ + N +L  
Sbjct: 62  VSVYHKMVSALVLPRFTSLSALTESFVNTHHPSFAFSVLSLMTKRGFGVNVYNLNLVLKG 121

Query: 183 LCKEKKVEKAYNLFKVFRGKFKA---DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
            C+  + +KA +LF   +  +     D ++YN + NG+C  KR  +A  VL E + +G +
Sbjct: 122 FCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCKAKRLAEA-RVLFEAMKKGGD 180

Query: 240 --PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
             PNL TY++++  Y ++G++ E      EM++   + DV  Y++++  F   G+I+  R
Sbjct: 181 CRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSSLISAFCGEGDIETGR 240

Query: 298 NVFDGMVNGGVLPSVATYNAMIQ-----------------------------------VL 322
            +FD M+   V P+V TY+ ++Q                                    L
Sbjct: 241 ELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLADGL 300

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
           CK     +AI V + MV KG  P + TYNVV+ GLC    M+ A   V  M     +P+ 
Sbjct: 301 CKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDA 360

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGS-----------------GVCLP---------- 415
            TYN L++  C AG+I   ++L++ + S                 G+C            
Sbjct: 361 VTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIH 420

Query: 416 ----------NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
                     N+ TYN LI      +K   L+ A KL    V+ GF P   T++ ++NGL
Sbjct: 421 SSMVEMGLQGNIVTYNFLIEGYLAARK---LIEALKLWKYAVESGFSPNSMTYSVMINGL 477



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/375 (27%), Positives = 172/375 (45%), Gaps = 8/375 (2%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177
           D  T   L   M    + P   T++ + +     G+   A ++   M   G R  + ++ 
Sbjct: 235 DIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYT 294

Query: 178 TILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
            + D LCK  +   A  +  +   K +    ++YNV+ NG C   R + A  V++ MV +
Sbjct: 295 VLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKK 354

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEA---WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           G  P+  TYN +LKG   AG+I EA   W+  L  +K   + DV T   ++ G    G +
Sbjct: 355 GKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLS-EKFHVKPDVFTCNNLIQGLCKEGRV 413

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
             A  +   MV  G+  ++ TYN +I+       +  A+ +++  V  G+ PNS TY+V+
Sbjct: 414 HDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVESGFSPNSMTYSVM 473

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           I GLC    +  A     +MKD    P V  YN L+   C    +E+   LF++M +   
Sbjct: 474 INGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQARSLFQEMRNVNH 533

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGL 473
             ++ ++NI+I       K+ D+  A +LL EM     +P   TF+ ++N    +G    
Sbjct: 534 NVDVVSFNIIIDGTL---KAGDVKSAKELLSEMFMMDLVPDAVTFSILINRFSKLGMLDE 590

Query: 474 AKEILRLQSRCGRLP 488
           A  +      CG +P
Sbjct: 591 AMGLYEKMVSCGHVP 605



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 164/317 (51%), Gaps = 6/317 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+ ++        + D A  +   M + G +    ++NT+L  LC   K+ +A +L
Sbjct: 323 PGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDL 382

Query: 196 FKVFRGK---FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
           +K+   +    K DV + N +  G C   R + A  +   MV+ GL  N+ TYN +++GY
Sbjct: 383 WKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGY 442

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
             A ++ EA + +    +     + +TY+ +++G   +  +  AR +F  M + G+ P+V
Sbjct: 443 LAARKLIEALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTV 502

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
             YNA++  LC++DS+E A  +F+EM    +  +  ++N++I G    G+++ A E +  
Sbjct: 503 IDYNALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSE 562

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           M   +  P+  T++ILI  F   G ++  + L+EKM S   +P +  ++ L+    ++ +
Sbjct: 563 MFMMDLVPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCGHVPGVVVFDSLLKGYGLKGE 622

Query: 433 SDDLLVAGKLLIEMVDR 449
           ++ ++    LL +M D+
Sbjct: 623 TEKII---SLLHQMADK 636



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 138/282 (48%), Gaps = 2/282 (0%)

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
           A ++ +   +W L+   K   + P   T   + +     G+   A +I  SM E G + +
Sbjct: 373 AGKIHEAMDLWKLLLSEK-FHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGN 431

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLK 231
           + ++N +++     +K+ +A  L+K      F  + ++Y+V+ NG C ++  + A  +  
Sbjct: 432 IVTYNFLIEGYLAARKLIEALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFC 491

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
           +M D G+ P +  YN ++    R   +E+A   F EM+     +DVV++  I+ G    G
Sbjct: 492 KMKDSGIRPTVIDYNALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAG 551

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
           ++K A+ +   M    ++P   T++ +I    K   ++ A+ ++E+MV  G++P    ++
Sbjct: 552 DVKSAKELLSEMFMMDLVPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCGHVPGVVVFD 611

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
            +++G    GE E+ +  + +M D +   + +  + ++   C
Sbjct: 612 SLLKGYGLKGETEKIISLLHQMADKDVVLDSKLTSTILACLC 653



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 114/230 (49%), Gaps = 4/230 (1%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KV 198
           T+  + E Y++A K   A+K++    E G   +  +++ +++ LCK + +  A  LF K+
Sbjct: 434 TYNFLIEGYLAARKLIEALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKM 493

Query: 199 FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
                +  VI YN +    C      +A  + +EM +   N ++ ++NI++ G  +AG +
Sbjct: 494 KDSGIRPTVIDYNALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDV 553

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           + A     EM       D VT++ +++ F  +G +  A  +++ MV+ G +P V  ++++
Sbjct: 554 KSAKELLSEMFMMDLVPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCGHVPGVVVFDSL 613

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
           ++    K   E  I +  +M  K  + +S   + ++  LCH   M R L+
Sbjct: 614 LKGYGLKGETEKIISLLHQMADKDVVLDSKLTSTILACLCH---MSRNLD 660


>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
          Length = 683

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 171/351 (48%), Gaps = 8/351 (2%)

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
           R    LV RM +    P+  T+  + +      +AD A  +   + E     ++   NT+
Sbjct: 264 REAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAMLGRLPE----VNVVMLNTV 319

Query: 180 LDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           +     E K+ +A  L+++   K    DV +Y+++ +G C + R   A+ +L EM ++G 
Sbjct: 320 IRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGC 379

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
            PN+ TY+ +L  + R G  ++A     +M  +   ++   Y  I++     G++ +A  
Sbjct: 380 APNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATR 439

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
           +   M + G  P + TYN MI  LC  D +E A  +F  ++ +G + N  TYN +I  L 
Sbjct: 440 LVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALL 499

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLD 418
             G  +  L     M    C+ +V +YN LI+  C  G ++R + L E+M +    PN  
Sbjct: 500 RNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNF 559

Query: 419 TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
           +YN+LI+ +    K  D L   K   EM+++G  P   T+N ++NGL  +G
Sbjct: 560 SYNMLINELCKAGKVRDALELSK---EMLNQGLTPDIVTYNTLINGLCKVG 607



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 165/336 (49%), Gaps = 5/336 (1%)

Query: 97  PTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADR 156
           P   H+ S   H +    +L  + +   ++  M+     P   T++ +   +   G  D 
Sbjct: 345 PPDVHTYSILMHGL---CKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDD 401

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIAN 215
           A  +   M   G   +   +N I+  LCK+ K+++A  L +  + +  K D+ +YN +  
Sbjct: 402 ARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIY 461

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
             C      +A  + + +++ G+  N  TYN ++    R G+ +E  R   EM    C++
Sbjct: 462 HLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQL 521

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
           DV++Y  ++      G + R+  + + MV  G+ P+  +YN +I  LCK   V +A+ + 
Sbjct: 522 DVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALELS 581

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
           +EM+ +G  P+  TYN +I GLC  G    AL  + ++ ++   P++ TYNILI + C  
Sbjct: 582 KEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKV 641

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
             ++    L +K  SG  +PN  T+ +++ + FVR+
Sbjct: 642 RLLDDAAMLLDKAISGGIVPNERTWGMMVQN-FVRQ 676



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 132/295 (44%), Gaps = 8/295 (2%)

Query: 172 SLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVL 230
           S  S+N +L  L +      A  L++ + R +      ++ V A   C + R   AL +L
Sbjct: 141 SFRSYNVVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARALCRLGRAGDALALL 200

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
           + M   G  P+   Y  V+      G + EA     EM    C  DV T+  +V G   +
Sbjct: 201 RGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAADVNTFNDLVLGLCGL 260

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           G ++ A  + D M+  G +PSV TY  ++Q LC+    + A      M+G+    N    
Sbjct: 261 GRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEAC----AMLGRLPEVNVVML 316

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           N VIRG    G++ RA E    M    C P+V TY+IL+   C  G     + + ++M  
Sbjct: 317 NTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEE 376

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
             C PN+ TY+ L+ S       DD   A  +L +M+ +GF      +N ++  L
Sbjct: 377 KGCAPNIVTYSTLLHSFCRNGMWDD---ARAMLDQMLAKGFSMNSQGYNGIIYAL 428


>gi|296084463|emb|CBI25022.3| unnamed protein product [Vitis vinifera]
          Length = 927

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 178/365 (48%), Gaps = 4/365 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           LV  M+   +      +  + + Y   G  ++ + +F  + E G   S+ S+  +++L  
Sbjct: 395 LVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKECGFTPSVISYGCLINLYI 454

Query: 185 KEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  KV KA  + K+      K ++ +Y+++ NG+  +K    A  V +++V  GL P++ 
Sbjct: 455 KIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAVFEDVVKDGLKPDVV 514

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            YN +++ +   G ++ A R   EM+K +      T+  I+HGF   G+++RA  +FD M
Sbjct: 515 LYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSGDMRRALEIFDMM 574

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G +P+V T+NA+I  L +K  +E A+ + +EM   G  PN  TY  ++ G    G+ 
Sbjct: 575 RWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHTYTTIMHGYASLGDT 634

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
            +A E+  ++K +  E +V TY  L++  C +G ++  L +  +M S     N   YNIL
Sbjct: 635 GKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMSSQKIPRNTFVYNIL 694

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I     R    D+  A +L+ +M   G  P   T+   +N     G+   A + ++    
Sbjct: 695 IDGWARR---GDVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQRATKTIQEMEV 751

Query: 484 CGRLP 488
            G  P
Sbjct: 752 VGVKP 756



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 171/376 (45%), Gaps = 4/376 (1%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           S   F   +   AR  D          M++  + PT   +  +   Y      + A+   
Sbjct: 267 SRKEFGLMVTYYARRGDMHHARGTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSCV 326

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLV 220
             M E G   SL +++ ++    K    E A + FK  + +    + I Y  I    C  
Sbjct: 327 RKMKEEGIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNIIYAHCQA 386

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
               +A  +++EM + G++  +  Y+ ++ GY   G  E+    F  +K+      V++Y
Sbjct: 387 CNMTQAEALVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKECGFTPSVISY 446

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
             +++ +  +G++ +A  V   M   G+  ++ TY+ +I    +     NA  VFE++V 
Sbjct: 447 GCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAVFEDVVK 506

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
            G  P+   YN +IR  C  G M+RA+  V  M+ +   P  +T+  +I  F  +G++ R
Sbjct: 507 DGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSGDMRR 566

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
            LE+F+ M    C+P + T+N LI  +  + + +    A ++L EM   G  P + T+  
Sbjct: 567 ALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEK---AVEILDEMSLAGISPNEHTYTT 623

Query: 461 VLNGLLLIGNQGLAKE 476
           +++G   +G+ G A E
Sbjct: 624 IMHGYASLGDTGKAFE 639



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 168/375 (44%), Gaps = 39/375 (10%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           R+K     P+  ++  +   Y+  GK  +A+++   M   G + ++ +++ +++   + K
Sbjct: 433 RLKECGFTPSVISYGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLK 492

Query: 188 KVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
               A+ +F+ V +   K DV+ YN I   +C +   ++A+  +KEM      P   T+ 
Sbjct: 493 DWANAFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFM 552

Query: 247 IVLKGYFRAGQIEEAWRFFLEMK------------------KRKCEIDVV---------- 278
            ++ G+ R+G +  A   F  M+                    KC+++            
Sbjct: 553 PIIHGFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLA 612

Query: 279 -------TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
                  TYTTI+HG+  +G+  +A   F  +   G+   V TY A+++  CK   +++A
Sbjct: 613 GISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSA 672

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
           + V  EM  +    N+  YN++I G    G++  A E + +MK +  +P++ TY   I  
Sbjct: 673 LAVTREMSSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINA 732

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
            C AG+++R  +  ++M      PN+ TY  LI         +  L   K   EM   G 
Sbjct: 733 CCKAGDMQRATKTIQEMEVVGVKPNIKTYTTLIHGWARASLPEKAL---KCFQEMKSAGL 789

Query: 452 MPRKFTFNRVLNGLL 466
            P K  ++ ++  LL
Sbjct: 790 KPDKAVYHCLMTSLL 804



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 165/352 (46%), Gaps = 4/352 (1%)

Query: 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           H+  ++   I+   RL+D+   + +   +    L P    +  I   +   G  DRA++ 
Sbjct: 476 HNMKTYSMLINGFVRLKDWANAFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRT 535

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCL 219
              M +   R +  +F  I+    +   + +A  +F + R       V ++N +  G   
Sbjct: 536 VKEMQKERHRPTTRTFMPIIHGFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVE 595

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
             +  KA+E+L EM   G++PN  TY  ++ GY   G   +A+ +F ++K    E+DV T
Sbjct: 596 KCQMEKAVEILDEMSLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYT 655

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y  ++      G ++ A  V   M +  +  +   YN +I    ++  V  A  + ++M 
Sbjct: 656 YEALLKACCKSGRMQSALAVTREMSSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMK 715

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            +G  P+  TY   I   C  G+M+RA + +  M+    +PN++TY  LI  +  A   E
Sbjct: 716 QEGVQPDIHTYTSFINACCKAGDMQRATKTIQEMEVVGVKPNIKTYTTLIHGWARASLPE 775

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKK-SDDLLVAGKLLI--EMVD 448
           + L+ F++M S    P+   Y+ L++S+  R   +++ + +G + I  EM++
Sbjct: 776 KALKCFQEMKSAGLKPDKAVYHCLMTSLLSRASVAEEYIYSGVVGICREMIE 827



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 113/282 (40%), Gaps = 38/282 (13%)

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
           + + +  +R   P+   + +++  Y R G +  A   F  M+ R  E     YT+++H +
Sbjct: 254 QAVVQAFERIKKPSRKEFGLMVTYYARRGDMHHARGTFESMRARGIEPTSHVYTSLIHAY 313

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
            V  +++ A +    M   G+  S+ TY+ ++    K    E A   F+E   +    N+
Sbjct: 314 AVGRDMEEALSCVRKMKEEGIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERHTTLNA 373

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDD------------------------------- 376
             Y  +I   C    M +A   V  M+++                               
Sbjct: 374 IIYGNIIYAHCQACNMTQAEALVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDR 433

Query: 377 --EC--EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
             EC   P+V +Y  LI  +   G++ + LE+ + M       N+ TY++LI+  FVR K
Sbjct: 434 LKECGFTPSVISYGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLING-FVRLK 492

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
             D   A  +  ++V  G  P    +N ++     +GN   A
Sbjct: 493 --DWANAFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRA 532



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/202 (17%), Positives = 81/202 (40%), Gaps = 6/202 (2%)

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
           ++   +   M S  +      + I+ + +   G    A ++   M + G +  ++++ + 
Sbjct: 670 QSALAVTREMSSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSF 729

Query: 180 LDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           ++  CK   +++A    +       K ++ +Y  + +GW       KAL+  +EM   GL
Sbjct: 730 INACCKAGDMQRATKTIQEMEVVGVKPNIKTYTTLIHGWARASLPEKALKCFQEMKSAGL 789

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFF----LEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
            P+   Y+ ++        + E + +     +  +  +CE+  V   T VH    + +I+
Sbjct: 790 KPDKAVYHCLMTSLLSRASVAEEYIYSGVVGICREMIECEL-TVDMGTAVHWSKCLRKIE 848

Query: 295 RARNVFDGMVNGGVLPSVATYN 316
           R        +     P   +YN
Sbjct: 849 RTGGELTEALQKTFPPDWNSYN 870


>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/363 (29%), Positives = 178/363 (49%), Gaps = 8/363 (2%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   I+   R ++ R  + L+  MK  ++  +  T+  + +   S+G  D A  I   M
Sbjct: 384 AYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEM 443

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRT 223
              GCR ++  + T++    +  +   A  + K  + +  A D+  YN +  G    KR 
Sbjct: 444 IASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRM 503

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI--DVVTYT 281
           ++A   L EMV+ GL PN  TY   + GY  A +   A ++  EM  R+C +  + V  T
Sbjct: 504 DEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEM--RECGVLPNKVLCT 561

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
            +++ +    ++  A + +  MV+ G+L    TY  ++  L K D V++A  +F EM GK
Sbjct: 562 GLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGK 621

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
           G  P+  +Y V+I G    G M++A      M ++   PNV  YN+L+  FC +GEIE+ 
Sbjct: 622 GIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKA 681

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
            EL ++M      PN  TY  +I       KS DL  A +L  EM  +G +P  F +  +
Sbjct: 682 KELLDEMSVKGLHPNAVTYCTIIDGYC---KSGDLAEAFRLFDEMKLKGLVPDSFVYTTL 738

Query: 462 LNG 464
           ++G
Sbjct: 739 VDG 741



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 95/424 (22%), Positives = 186/424 (43%), Gaps = 38/424 (8%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           SP ++   +       D    + +V  M +    P    +  + + ++   +   A+++ 
Sbjct: 416 SPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVL 475

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGW--- 217
             M E G    +  +N+++  L K K++++A + L ++     K +  +Y    +G+   
Sbjct: 476 KEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEA 535

Query: 218 --------------------------------CLVKRTNKALEVLKEMVDRGLNPNLTTY 245
                                           C  ++  +A    + MVD+G+  +  TY
Sbjct: 536 SEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTY 595

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
            +++ G F+  ++++A   F EM+ +    DV +Y  +++GF  +G +++A ++FD MV 
Sbjct: 596 TVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVE 655

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G+ P+V  YN ++   C+   +E A  + +EM  KG  PN+ TY  +I G C +G++  
Sbjct: 656 EGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAE 715

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           A      MK     P+   Y  L+   C   ++ER + +F     G C  +   +N LI+
Sbjct: 716 AFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKG-CASSTAPFNALIN 774

Query: 426 SMFVRKKSD-DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484
            +F   K++    V  +L+    DR   P   T+N +++ L   GN   AKE+       
Sbjct: 775 WVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNA 834

Query: 485 GRLP 488
             +P
Sbjct: 835 NLMP 838



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/429 (24%), Positives = 184/429 (42%), Gaps = 43/429 (10%)

Query: 103 PSSFDHAIDLAARLR--DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P++F +   ++  +   ++ +    V  M+   + P +     +   Y    K   A   
Sbjct: 520 PNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKEKVIEACSA 579

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCL 219
           + SM + G      ++  +++ L K  KV+ A  +F+  RGK  A DV SY V+ NG+  
Sbjct: 580 YRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSK 639

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
           +    KA  +  EMV+ GL PN+  YN++L G+ R+G+IE+A     EM  +    + VT
Sbjct: 640 LGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVT 699

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE-- 337
           Y TI+ G+   G++  A  +FD M   G++P    Y  ++   C+ + VE AI +F    
Sbjct: 700 YCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNK 759

Query: 338 ------------------MVGKGYM------------------PNSTTYNVVIRGLCHTG 361
                               GK  +                  PN  TYN++I  LC  G
Sbjct: 760 KGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEG 819

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
            +E A E   +M++    P V TY  L+  +   G       +F++  +    P+   Y+
Sbjct: 820 NLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYS 879

Query: 422 ILISSMFVRKKSDDLLVAGKLLI--EMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           ++I++      +   LV    +     VD G      T   +L+G   +G   +A++++ 
Sbjct: 880 VIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVME 939

Query: 480 LQSRCGRLP 488
              R   +P
Sbjct: 940 NMVRLQYIP 948



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 167/388 (43%), Gaps = 10/388 (2%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++D  ID   +++      +L+  M SL +     T++++ +  +    AD A  +   M
Sbjct: 279 TYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEM 338

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVI----SYNVIANGWCLV 220
             HG       ++  + ++ KE  +EKA  LF    G   + +I    +Y  +  G+C  
Sbjct: 339 VSHGINIKPYMYDCCICVMSKEGVMEKAKALFD---GMIASGLIPQAQAYASLIEGYCRE 395

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
           K   +  E+L EM  R +  +  TY  V+KG   +G ++ A+    EM    C  +VV Y
Sbjct: 396 KNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIY 455

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
           TT++  F        A  V   M   G+ P +  YN++I  L K   ++ A     EMV 
Sbjct: 456 TTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVE 515

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
            G  PN+ TY   I G     E   A ++V  M++    PN      LI  +C   ++  
Sbjct: 516 NGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKEKVIE 575

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
               +  M     L +  TY +L++ +F   K DD   A ++  EM  +G  P  F++  
Sbjct: 576 ACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDD---AEEIFREMRGKGIAPDVFSYGV 632

Query: 461 VLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           ++NG   +GN   A  I       G  P
Sbjct: 633 LINGFSKLGNMQKASSIFDEMVEEGLTP 660



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 134/282 (47%), Gaps = 3/282 (1%)

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           +Y+V+ +G C +KR   A  +L EM   G++ +  TY++++ G  +    + A     EM
Sbjct: 279 TYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEM 338

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
                 I    Y   +      G +++A+ +FDGM+  G++P    Y ++I+  C++ +V
Sbjct: 339 VSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNV 398

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
                +  EM  +  + +  TY  V++G+C +G+++ A   V  M    C PNV  Y  L
Sbjct: 399 RQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTL 458

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           I+ F         + + ++M      P++  YN LI  +   K+ D+   A   L+EMV+
Sbjct: 459 IKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDE---ARSFLVEMVE 515

Query: 449 RGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
            G  P  FT+   ++G +       A + ++    CG LP +
Sbjct: 516 NGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNK 557



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 119/278 (42%), Gaps = 9/278 (3%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M    L P   T+  I + Y  +G    A ++F  M   G       + T++D  C
Sbjct: 684 LLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCC 743

Query: 185 KEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN----P 240
           +   VE+A  +F   +    +    +N + N      +T    EVL  ++D   +    P
Sbjct: 744 RLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKP 803

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           N  TYNI++    + G +E A   F +M+       V+TYT++++G+  +G       VF
Sbjct: 804 NDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVF 863

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS-----TTYNVVIR 355
           D  +  G+ P    Y+ +I    K+     A+++ ++M  K  + +      +T   ++ 
Sbjct: 864 DEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLS 923

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           G    GEME A + +  M   +  P+  T   LI   C
Sbjct: 924 GFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESC 961



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 139/319 (43%), Gaps = 13/319 (4%)

Query: 102 SPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           +P  F +   I+  ++L + +   ++   M    L P    + ++   +  +G+ ++A +
Sbjct: 624 APDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKE 683

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWC 218
           +   M   G   +  ++ TI+D  CK   + +A+ LF   + K    D   Y  + +G C
Sbjct: 684 LLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCC 743

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE---EAWRFFLEMK-KRKCE 274
            +    +A+ +      +G   +   +N ++   F+ G+ E   E     ++    R  +
Sbjct: 744 RLNDVERAITIFGTN-KKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGK 802

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
            + VTY  ++      G ++ A+ +F  M N  ++P+V TY +++    K         V
Sbjct: 803 PNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPV 862

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM-----KDDECEPNVQTYNILI 389
           F+E +  G  P+   Y+V+I      G   +AL  V +M      DD C+ ++ T   L+
Sbjct: 863 FDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALL 922

Query: 390 RYFCDAGEIERGLELFEKM 408
             F   GE+E   ++ E M
Sbjct: 923 SGFAKVGEMEVAEKVMENM 941


>gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 176/356 (49%), Gaps = 4/356 (1%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           +D   +L    TVW     +           F I+  ++   G    A K+F  + +   
Sbjct: 212 LDRMMKLNPTGTVWGFYMEILDAGFPLNVYVFNILMNKFCKEGNICDAQKVFDEITKRSL 271

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNL-FKVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
           R ++ SFNT+++  CK   ++  + L   + + + + DV +Y+ + N  C   + + A  
Sbjct: 272 RPTVVSFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVFTYSALINALCKENKMDGAHR 331

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           +  EM +RGL PN   +  ++ G+ R GQI+     + +M  +  + D+V Y T+V+GF 
Sbjct: 332 LFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFC 391

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G++  ARN+ DGM+  G+ P   TY  +I   C+   V+ A+ + +EM   G   +  
Sbjct: 392 KNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRV 451

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            ++ +I G+C  G +  A   +  M     +P+  TY +++  FC  G+ + G +L ++M
Sbjct: 452 GFSALICGMCKEGRVIDAERALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEM 511

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
            S   +PN+ TYN+L++ +    K   +  A  LL  M++ G +P   T+N +L G
Sbjct: 512 QSDGHIPNVVTYNVLLNGLC---KLGQMKNADMLLDAMLNVGVVPDDITYNTLLEG 564



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 146/314 (46%), Gaps = 4/314 (1%)

Query: 176 FNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           FN +++  CKE  +  A  +F ++ +   +  V+S+N + NG+C V   +    +   M 
Sbjct: 243 FNILMNKFCKEGNICDAQKVFDEITKRSLRPTVVSFNTLINGYCKVGNLDVGFRLKHHME 302

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
                P++ TY+ ++    +  +++ A R F EM +R    + V +TT++HG    G+I 
Sbjct: 303 KSRTRPDVFTYSALINALCKENKMDGAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQID 362

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
             +  +  M++ G+ P +  YN ++   CK   +  A  + + M+ +G  P+  TY  +I
Sbjct: 363 LMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLI 422

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
            G C  G+++ ALE    M  +  E +   ++ LI   C  G +        +M      
Sbjct: 423 DGFCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAERALREMLRAGMK 482

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           P+  TY +++ +     K  D     KLL EM   G +P   T+N +LNGL  +G    A
Sbjct: 483 PDDVTYTMMMDAFC---KKGDAQTGFKLLKEMQSDGHIPNVVTYNVLLNGLCKLGQMKNA 539

Query: 475 KEILRLQSRCGRLP 488
             +L      G +P
Sbjct: 540 DMLLDAMLNVGVVP 553



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 132/286 (46%), Gaps = 1/286 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           SF+  I+   ++ +    + L H M+     P   T++ +        K D A ++F  M
Sbjct: 277 SFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVFTYSALINALCKENKMDGAHRLFYEM 336

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
            E G   +   F T++    +  +++     + K+     + D++ YN + NG+C     
Sbjct: 337 CERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDL 396

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
             A  ++  M+ RGL P+  TY  ++ G+ R G ++ A     EM +   E+D V ++ +
Sbjct: 397 VAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSAL 456

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G    G +  A      M+  G+ P   TY  M+   CKK   +    + +EM   G+
Sbjct: 457 ICGMCKEGRVIDAERALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGH 516

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
           +PN  TYNV++ GLC  G+M+ A   +  M +    P+  TYN L+
Sbjct: 517 IPNVVTYNVLLNGLCKLGQMKNADMLLDAMLNVGVVPDDITYNTLL 562



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 79/181 (43%), Gaps = 12/181 (6%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID   R  D  T   +   M    +   +  F+ +       G+   A +    M   G 
Sbjct: 422 IDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAERALREMLRAGM 481

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFK-ADVISYNVIANGWCLVKRTNKALE 228
           +    ++  ++D  CK+   +  + L K  +      +V++YNV+ NG C + +   A  
Sbjct: 482 KPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHIPNVVTYNVLLNGLCKLGQMKNADM 541

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI----DVVTYTTIV 284
           +L  M++ G+ P+  TYN +L+G+ R     + +       K+K EI    D+ +Y ++V
Sbjct: 542 LLDAMLNVGVVPDDITYNTLLEGHHRHANASKHY-------KQKPEIGIVADLASYKSLV 594

Query: 285 H 285
           +
Sbjct: 595 N 595


>gi|356577532|ref|XP_003556878.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Glycine max]
          Length = 932

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 178/365 (48%), Gaps = 4/365 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           LV  M+   +      +  + + Y   G  ++ + +F  + E G   S+ S+  +++L  
Sbjct: 411 LVREMEEQGIDAPIDIYHTMMDGYTMIGNEEKCLIVFDRLKECGFFPSVISYGCLINLYT 470

Query: 185 KEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  KV KA  + K+ +    K ++ +Y+++ NG+  +K    A  V ++    GL P++ 
Sbjct: 471 KVGKVSKALEISKMMKMSGIKHNMKTYSMLINGFLKLKDWANAFSVFEDFTKDGLKPDVV 530

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            YN ++  +   G ++ A     +M+K +      T+  I+HGF   GE++RA  +FD M
Sbjct: 531 LYNNIITAFCGMGNMDRAICMVRQMQKERHRPTTRTFLPIIHGFARAGEMRRALEIFDMM 590

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G +P+V TYNA+I  L +K  +  A+ + +EM   G  PN  TY  +++G    G+ 
Sbjct: 591 RRSGCIPTVHTYNALILGLVEKRQMTKAVAILDEMNVAGVGPNEHTYTTLMQGYASLGDT 650

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           E+A ++   ++++  E +V TY  L++  C +G ++  L + ++M +     N   YNIL
Sbjct: 651 EKAFQYFTVLRNEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSAKNIPRNTFVYNIL 710

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I     R    D+  A  L+ +M   G +P   T+   +N     G+   A EI++    
Sbjct: 711 IDGWARR---GDVWEAADLMQQMRKEGLLPDIHTYTSFINACCKAGDMQKATEIIQEMEA 767

Query: 484 CGRLP 488
            G  P
Sbjct: 768 SGIKP 772



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 164/343 (47%), Gaps = 4/343 (1%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M++  + P+   ++ +   Y      + A+     M E G   ++ +++ I+    K   
Sbjct: 310 MRARGIEPSSHVYSSLIHAYAVGRDMEEALHCVRKMKEEGIEMTIVTYSIIVGGFAKMGN 369

Query: 189 VEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
            + A + F+  + K  + + + Y  I    C +   ++A  +++EM ++G++  +  Y+ 
Sbjct: 370 ADAADHWFEEAKEKLPSLNAVIYGGIIYAHCQICNMDRAEALVREMEEQGIDAPIDIYHT 429

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ GY   G  E+    F  +K+      V++Y  +++ +  VG++ +A  +   M   G
Sbjct: 430 MMDGYTMIGNEEKCLIVFDRLKECGFFPSVISYGCLINLYTKVGKVSKALEISKMMKMSG 489

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           +  ++ TY+ +I    K     NA  VFE+    G  P+   YN +I   C  G M+RA+
Sbjct: 490 IKHNMKTYSMLINGFLKLKDWANAFSVFEDFTKDGLKPDVVLYNNIITAFCGMGNMDRAI 549

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
             V +M+ +   P  +T+  +I  F  AGE+ R LE+F+ M    C+P + TYN LI  +
Sbjct: 550 CMVRQMQKERHRPTTRTFLPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTYNALILGL 609

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
             +++   +  A  +L EM   G  P + T+  ++ G   +G+
Sbjct: 610 VEKRQ---MTKAVAILDEMNVAGVGPNEHTYTTLMQGYASLGD 649



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 153/331 (46%), Gaps = 1/331 (0%)

Query: 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           H+  ++   I+   +L+D+   +++        L P    +  I   +   G  DRA+ +
Sbjct: 492 HNMKTYSMLINGFLKLKDWANAFSVFEDFTKDGLKPDVVLYNNIITAFCGMGNMDRAICM 551

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCL 219
              M +   R +  +F  I+    +  ++ +A  +F + R       V +YN +  G   
Sbjct: 552 VRQMQKERHRPTTRTFLPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTYNALILGLVE 611

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
            ++  KA+ +L EM   G+ PN  TY  +++GY   G  E+A+++F  ++    EIDV T
Sbjct: 612 KRQMTKAVAILDEMNVAGVGPNEHTYTTLMQGYASLGDTEKAFQYFTVLRNEGLEIDVYT 671

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y  ++      G ++ A  V   M    +  +   YN +I    ++  V  A  + ++M 
Sbjct: 672 YEALLKSCCKSGRMQSALAVTKEMSAKNIPRNTFVYNILIDGWARRGDVWEAADLMQQMR 731

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            +G +P+  TY   I   C  G+M++A E +  M+    +PN++TY  LI  +  A   E
Sbjct: 732 KEGLLPDIHTYTSFINACCKAGDMQKATEIIQEMEASGIKPNLKTYTTLINGWARASMPE 791

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
           + L  FE+M      P+   Y+ L++S+  R
Sbjct: 792 KALSCFEEMKLAGFKPDKAVYHCLVTSLLSR 822



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 125/283 (44%), Gaps = 36/283 (12%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           +V +M+     PT +TF  I   +  AG+  RA++IF  M   GC  +++++N ++  L 
Sbjct: 551 MVRQMQKERHRPTTRTFLPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTYNALILGLV 610

Query: 185 KEKKV-----------------------------------EKAYNLFKVFRGK-FKADVI 208
           +++++                                   EKA+  F V R +  + DV 
Sbjct: 611 EKRQMTKAVAILDEMNVAGVGPNEHTYTTLMQGYASLGDTEKAFQYFTVLRNEGLEIDVY 670

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           +Y  +    C   R   AL V KEM  + +  N   YNI++ G+ R G + EA     +M
Sbjct: 671 TYEALLKSCCKSGRMQSALAVTKEMSAKNIPRNTFVYNILIDGWARRGDVWEAADLMQQM 730

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
           +K     D+ TYT+ ++     G++++A  +   M   G+ P++ TY  +I    +    
Sbjct: 731 RKEGLLPDIHTYTSFINACCKAGDMQKATEIIQEMEASGIKPNLKTYTTLINGWARASMP 790

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
           E A+  FEEM   G+ P+   Y+ ++  L       ++  + G
Sbjct: 791 EKALSCFEEMKLAGFKPDKAVYHCLVTSLLSRATFAQSYVYSG 833



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 114/256 (44%), Gaps = 7/256 (2%)

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
           A +  + M  RG+ P+   Y+ ++  Y     +EEA     +MK+   E+ +VTY+ IV 
Sbjct: 303 ARQTFESMRARGIEPSSHVYSSLIHAYAVGRDMEEALHCVRKMKEEGIEMTIVTYSIIVG 362

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSV--ATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           GF  +G    A + F+       LPS+    Y  +I   C+  +++ A  +  EM  +G 
Sbjct: 363 GFAKMGNADAADHWFEEAKEK--LPSLNAVIYGGIIYAHCQICNMDRAEALVREMEEQGI 420

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
                 Y+ ++ G    G  E+ L    R+K+    P+V +Y  LI  +   G++ + LE
Sbjct: 421 DAPIDIYHTMMDGYTMIGNEEKCLIVFDRLKECGFFPSVISYGCLINLYTKVGKVSKALE 480

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           + + M       N+ TY++LI+      K  D   A  +  +    G  P    +N ++ 
Sbjct: 481 ISKMMKMSGIKHNMKTYSMLINGFL---KLKDWANAFSVFEDFTKDGLKPDVVLYNNIIT 537

Query: 464 GLLLIGNQGLAKEILR 479
               +GN   A  ++R
Sbjct: 538 AFCGMGNMDRAICMVR 553



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 82/179 (45%), Gaps = 3/179 (1%)

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           P+   Y  M++   ++  + +A   FE M  +G  P+S  Y+ +I       +ME AL  
Sbjct: 282 PARKEYGLMVKYYGRRGDMHHARQTFESMRARGIEPSSHVYSSLIHAYAVGRDMEEALHC 341

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
           V +MK++  E  + TY+I++  F   G  +     FE+      LP+L+   I    ++ 
Sbjct: 342 VRKMKEEGIEMTIVTYSIIVGGFAKMGNADAADHWFEEAKEK--LPSLNAV-IYGGIIYA 398

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             +  ++  A  L+ EM ++G       ++ +++G  +IGN+     +      CG  P
Sbjct: 399 HCQICNMDRAEALVREMEEQGIDAPIDIYHTMMDGYTMIGNEEKCLIVFDRLKECGFFP 457


>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
          Length = 897

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 174/369 (47%), Gaps = 12/369 (3%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           ++FD  +     L   R    LV RM +    P   T+  + +      +AD A  +   
Sbjct: 230 NTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGR 289

Query: 164 MHEHGCRQSLNS--FNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLV 220
           + E      LN   FNT++     E K+ +A  L++    K  + D  +Y+++ +G C +
Sbjct: 290 VPE------LNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKL 343

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
            R   A+ +L+EM  +G  PN+ TY IVL  + + G  ++      EM  +   ++   Y
Sbjct: 344 GRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGY 403

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
             +++     G +  A  +   M + G  P + +YN +I  LC  + +E A  +FE ++ 
Sbjct: 404 NGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLE 463

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           +G + N  TYN +I  L   G  + A+     M    C  +V +YN LI+  C  G ++R
Sbjct: 464 EGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDR 523

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
            L L E+M      PN  +YNILIS +   ++  D L   K   +M+++G  P   T+N 
Sbjct: 524 SLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSK---QMLNQGLAPDIVTYNT 580

Query: 461 VLNGLLLIG 469
           ++NGL  +G
Sbjct: 581 LINGLCKMG 589



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 175/369 (47%), Gaps = 15/369 (4%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           R R +     +VHR +   + PT  TF + A      G+AD A+ +   M  HGC     
Sbjct: 139 RARRFALYRRMVHRDR---VPPTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAV 195

Query: 175 SFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
            + T++  LC +  V +A  L  ++      ADV +++ +  G C + R  +A  ++  M
Sbjct: 196 LYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRM 255

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           + +G  P + TY  +L+G  R  Q +EA      M  R  E++VV + T++ G    G++
Sbjct: 256 MTKGCMPGVMTYGFLLQGLCRVRQADEA----RAMLGRVPELNVVLFNTVIGGCLAEGKL 311

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
             A  +++ M   G  P   TY+ ++  LCK   + +A+ +  EM  KG+ PN  TY +V
Sbjct: 312 AEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIV 371

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           +   C  G  +     +  M       N Q YN +I   C  G ++  + L ++M S  C
Sbjct: 372 LHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGC 431

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG- 472
            P++ +YN +I  +   ++ ++   A  +   +++ G +    T+N +++ LL  G    
Sbjct: 432 NPDICSYNTIIYHLCNNEQMEE---AEHMFENLLEEGVVANGITYNTIIHALLRDGRWQD 488

Query: 473 ---LAKEIL 478
              LAKE++
Sbjct: 489 AVRLAKEMI 497



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 143/290 (49%), Gaps = 1/290 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M+     P   T+ I+   +   G  D    +   M   G   +   +N ++  LC
Sbjct: 352 LLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALC 411

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K+ ++++A  L +  R +    D+ SYN I    C  ++  +A  + + +++ G+  N  
Sbjct: 412 KDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGI 471

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN ++    R G+ ++A R   EM    C +DVV+Y  ++      G + R+  + + M
Sbjct: 472 TYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEM 531

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G+ P+  +YN +I  LCK+  V +A+ + ++M+ +G  P+  TYN +I GLC  G M
Sbjct: 532 AEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWM 591

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
             AL  + ++ ++   P++ TYNILI + C    ++    L  +  + VC
Sbjct: 592 HAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNRAMAAVC 641



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 143/291 (49%), Gaps = 1/291 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T++I+       G+   AV++   M + G   ++ ++  +L   CK    +    L
Sbjct: 328 PDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRAL 387

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            +    K    +   YN +    C   R ++A+ +++EM  +G NP++ +YN ++     
Sbjct: 388 LEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCN 447

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
             Q+EEA   F  + +     + +TY TI+H     G  + A  +   M+  G    V +
Sbjct: 448 NEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVS 507

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN +I+ +CK  +V+ ++++ EEM  KG  PN+ +YN++I  LC    +  ALE   +M 
Sbjct: 508 YNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQML 567

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           +    P++ TYN LI   C  G +   L L EK+ +    P++ TYNILIS
Sbjct: 568 NQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILIS 618



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 99/240 (41%), Gaps = 18/240 (7%)

Query: 256 GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV-----VGEIKRARNVFDGMVNGGVLP 310
           G +  A RF L   +R    D V  TT   G        +G    A  +  GM   G +P
Sbjct: 135 GGLPRARRFAL--YRRMVHRDRVPPTTFTFGVAARALCRLGRADEALALLRGMARHGCVP 192

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
               Y  +I  LC +  V  A  +  EM+  G   +  T++ V+RG+C  G +  A   V
Sbjct: 193 DAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLV 252

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT--YNILISSMF 428
            RM    C P V TY  L++  C   + +    +  +      +P L+   +N +I    
Sbjct: 253 DRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGR------VPELNVVLFNTVIGGCL 306

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
              K   L  A +L   M  +G  P   T++ +++GL  +G  G A  +LR   + G  P
Sbjct: 307 AEGK---LAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAP 363


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 148/278 (53%), Gaps = 1/278 (0%)

Query: 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVIS 209
           AG+ ++   IF  M   G    + S++ ++  L K  +  +  N+F+    + F  D  +
Sbjct: 538 AGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARA 597

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           YN + +G C   + +KA EVL+EM  + ++P + TY  ++ G  +  +++EA+  F E K
Sbjct: 598 YNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAK 657

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
            +  E++V+ Y++++ GFG VG I  A  + + M+  G+ P+V T+N+++  L K + ++
Sbjct: 658 SKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEID 717

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
            A++ F+ M      PN+ TY+++I GLC   +  +A  F   M+     PNV TY  +I
Sbjct: 718 EALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMI 777

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
                 G I     LFE+  +   +P+  ++N LI  M
Sbjct: 778 SGLAKVGNITDAYSLFERFKTNGGIPDSASFNALIEGM 815



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 171/363 (47%), Gaps = 4/363 (1%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           S+++  ID+          + +   M+   L P   +  I+ +R   A + + A +IF S
Sbjct: 386 STYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFES 445

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKR 222
             E GC  +  ++ +++D L K+ K++ AY LF K+      A+ I Y  +   + +  R
Sbjct: 446 ASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGR 505

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
                ++ KEM+ RG  P+LT  N  +   F+AG++E+    F +MK      DV +Y+ 
Sbjct: 506 KEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSI 565

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++HG    G+ +   N+F  M   G       YNA++  LCK   V+ A  V EEM  K 
Sbjct: 566 LIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKH 625

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
             P   TY  ++ GL     ++ A       K    E NV  Y+ LI  F   G I+   
Sbjct: 626 VHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAY 685

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
            + E+M      PN+ T+N L+ ++   ++ D+ L+  + + EM      P  +T++ ++
Sbjct: 686 LILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEM---KCSPNTYTYSILI 742

Query: 463 NGL 465
           NGL
Sbjct: 743 NGL 745



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/362 (29%), Positives = 178/362 (49%), Gaps = 21/362 (5%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAII-AER--------------YVSAGKADRAVKIFLSMHE 166
           VW L    K+  LG  ++ F  + AER              Y SA + D A K+   + E
Sbjct: 288 VWVLC---KAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRE 344

Query: 167 HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKA 226
            GC  S+ SFN+IL  L K++KV++A  LF V +   K ++ +YN+I +  C+  R N+A
Sbjct: 345 RGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKKDAKPNISTYNIIIDMLCMAGRVNEA 404

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
            ++  EM   GL PNL + NI++    +A Q+EEA R F    +R C  + VTY +++ G
Sbjct: 405 YKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDG 464

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
            G  G+I  A  +F+ M++ G   +   Y ++I+        E+   +++EM+ +G  P+
Sbjct: 465 LGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPD 524

Query: 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
            T  N  +  +   GE+E+       MK     P+V++Y+ILI     AG+      +F+
Sbjct: 525 LTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQ 584

Query: 407 KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
            M       +   YN ++  +    K D    A ++L EM  +   P   T+  +++GL 
Sbjct: 585 AMSQQGFALDARAYNAVVDGLCKSGKVDK---AYEVLEEMKVKHVHPTVATYGSIVDGLA 641

Query: 467 LI 468
            I
Sbjct: 642 KI 643



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 107/406 (26%), Positives = 180/406 (44%), Gaps = 48/406 (11%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
           AR         LV  +K   L P    + +  + +  AG  D A K F  +  HG R   
Sbjct: 222 AREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDD 281

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKAD-----VISYNVIANGWCLVKRTNKALE 228
            S+ +++ +LCK  ++ +A  LF    G+ +A+       +YN +  G+   +R + A +
Sbjct: 282 VSYTSMVWVLCKAGRLGEAEELF----GQMEAERDVPCAYAYNTMIMGYGSAERFDDAYK 337

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           +L+ + +RG  P++ ++N +L    +  +++EA   F  MKK   + ++ TY  I+    
Sbjct: 338 LLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKK-DAKPNISTYNIIIDMLC 396

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
           + G +  A  + D M   G+ P++ + N M+  LCK + +E A  +FE    +G  PNS 
Sbjct: 397 MAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSV 456

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF---------------- 392
           TY  +I GL   G+++ A     +M D   + N   Y  LIR F                
Sbjct: 457 TYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEM 516

Query: 393 -----------------C--DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
                            C   AGE+E+G  +FE M S   LP++ +Y+ILI  +    K+
Sbjct: 517 IRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGL---TKA 573

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
                   +   M  +GF      +N V++GL   G    A E+L 
Sbjct: 574 GQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLE 619



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 172/375 (45%), Gaps = 5/375 (1%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           R R     + ++  M+ L   P    + ++      A + +RA+++   M + G   S+ 
Sbjct: 153 RSRRLEDAFRVIGAMRHLKFRPPFSAYTVLIGALAEARQPERALELLRQMQDVGYEVSVP 212

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEM 233
            F T++  L +E ++E A  L    +G   + D++ YNV  + +      + A +   E+
Sbjct: 213 LFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHEL 272

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
              GL P+  +Y  ++    +AG++ EA   F +M+  +       Y T++ G+G     
Sbjct: 273 KAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERF 332

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
             A  + + +   G +PSV ++N+++  L KK  V+ A+ +F+ M  K   PN +TYN++
Sbjct: 333 DDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVM-KKDAKPNISTYNII 391

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           I  LC  G +  A +    M+     PN+ + NI++   C A ++E    +FE      C
Sbjct: 392 IDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGC 451

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGL 473
            PN  TY  LI  +  + K DD   A +L  +M+D G       +  ++    + G +  
Sbjct: 452 NPNSVTYCSLIDGLGKKGKIDD---AYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKED 508

Query: 474 AKEILRLQSRCGRLP 488
             +I +   R G  P
Sbjct: 509 GHKIYKEMIRRGGRP 523



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 151/320 (47%), Gaps = 1/320 (0%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           MKS    P  ++++I+      AG+A     IF +M + G      ++N ++D LCK  K
Sbjct: 551 MKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGK 610

Query: 189 VEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           V+KAY + +  + K     V +Y  I +G   + R ++A  + +E   +G+  N+  Y+ 
Sbjct: 611 VDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSS 670

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ G+ + G+I+EA+    EM K+    +V T+ +++       EI  A   F  M    
Sbjct: 671 LIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMK 730

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
             P+  TY+ +I  LC+      A + ++EM  +G +PN  TY  +I GL   G +  A 
Sbjct: 731 CSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAY 790

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
               R K +   P+  ++N LI    +A       ++FE+     C  N+ T   L+ ++
Sbjct: 791 SLFERFKTNGGIPDSASFNALIEGMSNANRPMEAYQVFEETRLRGCRLNVKTCISLLDAL 850

Query: 428 FVRKKSDDLLVAGKLLIEMV 447
              +  +   + G +L E+ 
Sbjct: 851 NKTECLEQAAIVGAVLSEIA 870



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 146/333 (43%), Gaps = 41/333 (12%)

Query: 183 LCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           L + +++E A+ +    R  KF+    +Y V+       ++  +ALE+L++M D G   +
Sbjct: 151 LVRSRRLEDAFRVIGAMRHLKFRPPFSAYTVLIGALAEARQPERALELLRQMQDVGYEVS 210

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           +  +  +++   R GQ+E A     E+K    E D+V Y   +  FG  G +  A   F 
Sbjct: 211 VPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFH 270

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            +   G+ P   +Y +M+ VLCK   +  A  +F +M  +  +P +  YN +I G     
Sbjct: 271 ELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAE 330

Query: 362 EMERALEFVGRMKDDEC----------------------------------EPNVQTYNI 387
             + A + + R+++  C                                  +PN+ TYNI
Sbjct: 331 RFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKKDAKPNISTYNI 390

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           +I   C AG +    ++ ++M      PNL + NI++  +    K++ L  A ++     
Sbjct: 391 IIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLC---KANQLEEAHRIFESAS 447

Query: 448 DRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           +RG  P   T+  +++GL   G +G   +  RL
Sbjct: 448 ERGCNPNSVTYCSLIDGL---GKKGKIDDAYRL 477



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 5/163 (3%)

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
           A++  L +   +E+A  V   M    + P  + Y V+I  L    + ERALE + +M+D 
Sbjct: 146 ALVATLVRSRRLEDAFRVIGAMRHLKFRPPFSAYTVLIGALAEARQPERALELLRQMQDV 205

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL-PNLDTYNILISSMFVRKKSDD 435
             E +V  +  L+R     G++E  L L +++  G CL P++  YN+ I   F +  S D
Sbjct: 206 GYEVSVPLFTTLVRALAREGQMEPALALVDEV-KGSCLEPDIVLYNVCIDC-FGKAGSVD 263

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           +  A K   E+   G  P   ++  ++  L   G  G A+E+ 
Sbjct: 264 M--AWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELF 304


>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
 gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
          Length = 699

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/428 (25%), Positives = 205/428 (47%), Gaps = 18/428 (4%)

Query: 73  DQIIKRLWNH------ALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLV 126
           + II+RL N       A K L       + PT       F+  I+   + +D  + + L+
Sbjct: 200 ETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLM----FNLVINGFCKAKDLDSAYKLL 255

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186
             M      P   TF I+      A +   A ++   M   GC  ++ +++T+++ LCK+
Sbjct: 256 EVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQ 315

Query: 187 KKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
            +V+ AY LF++  R     +V+++N++ +G C  KR  +A ++   M + G  P++ TY
Sbjct: 316 GQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITY 375

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEI-DVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           N ++ G  ++ Q++EA++ F  + +      + VTY+T+ HG+  +G +  A  +F  +V
Sbjct: 376 NSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLV 435

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
           + G  P +ATY ++I   CK       + + EEM  KG+ P   T + V+ GL      E
Sbjct: 436 DKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTE 495

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM---GSGVCLPNLDTYN 421
           RA++    M    C  +   YN+++     A + ++ L + E++         P+    +
Sbjct: 496 RAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQVIDKRDRKFNPSSSAVD 555

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481
            L+ S+    K+DD   A +LL +M +RGF     ++NR+L+GL  +     A ++    
Sbjct: 556 ALVESLCQVGKTDD---AKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAM 612

Query: 482 SRCGRLPR 489
              G  P 
Sbjct: 613 VSAGPAPE 620



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/383 (28%), Positives = 178/383 (46%), Gaps = 36/383 (9%)

Query: 120 RTVWTLVH-RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           R V  L H R  +    P   T+  +      AGK D A  +   M   GC     +F+T
Sbjct: 107 RVVEALEHFRAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFST 166

Query: 179 ILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
           ++D LCK    E+A+ + +  + RG   +D     +I            A +VL  ++ +
Sbjct: 167 LIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAK 226

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           G  P +  +N+V+ G+ +A  ++ A++    M ++ C  +V T+T ++ G      +  A
Sbjct: 227 GFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEA 286

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
           + + + MV GG  P+V TY+ +I  LCK+  V++A  +F+ M  +   PN  T+N++I G
Sbjct: 287 QQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDG 346

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGVCLP 415
           LC    +E A +   RM++  C P++ TYN LI   C + +++   +LF+ +  SGV   
Sbjct: 347 LCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAA 406

Query: 416 NLDTYNIL---------------ISSMFVRKK-SDDLLVAGKLLIE-------------- 445
           N  TY+ L               I SM V K  S DL     L++E              
Sbjct: 407 NAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELV 466

Query: 446 --MVDRGFMPRKFTFNRVLNGLL 466
             M  +GF PR  T + VL GL 
Sbjct: 467 EEMASKGFPPRVNTLSAVLGGLF 489



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 177/367 (48%), Gaps = 4/367 (1%)

Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
            H+  S + A+D+  RL   +    L     +    P + T+ I+   + SAG  D A++
Sbjct: 19  GHNVFSCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQ 78

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCL 219
           +   M   G   +     T++  LC   +V +A   F+        DV++Y  + +  C 
Sbjct: 79  LLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKDCAPDVMTYTALVHALCK 138

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
             + ++A  +L+EMV +G  P+  T++ ++ G  + G  E+A+R   ++ +R        
Sbjct: 139 AGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAA 198

Query: 280 YTTIVHGF-GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           + TI+         ++ A  V   ++  G  P+V  +N +I   CK   +++A  + E M
Sbjct: 199 FETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVM 258

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
           + KG +PN  T+ ++I GLC    +  A + + +M    C PNV TY+ +I   C  G++
Sbjct: 259 IEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQV 318

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           +   ELF+ M    C PN+ T+NILI  +   K+ ++   A +L   M + G  P   T+
Sbjct: 319 DDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEE---ARQLYHRMRETGCAPDIITY 375

Query: 459 NRVLNGL 465
           N +++GL
Sbjct: 376 NSLIDGL 382



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 167/378 (44%), Gaps = 43/378 (11%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
            + L   M+  +  P   T  I+ +    A + + A +++  M E GC   + ++N+++D
Sbjct: 321 AYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLID 380

Query: 182 LLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
            LCK  +V++A+ LF+     G   A+ ++Y+ + +G+  + R   A  +   +VD+G +
Sbjct: 381 GLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFS 440

Query: 240 PNLTTY-----------------------------------NIVLKGYFRAGQIEEAWRF 264
           P+L TY                                   + VL G F     E A + 
Sbjct: 441 PDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQL 500

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG---GVLPSVATYNAMIQV 321
           F  M  R C  D + Y  +V G     +  +A  V + +++       PS +  +A+++ 
Sbjct: 501 FDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQVIDKRDRKFNPSSSAVDALVES 560

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           LC+    ++A  +  +M  +G+    ++YN ++ GL      + A +    M      P 
Sbjct: 561 LCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVSAGPAPE 620

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
           + T N++I + C A +++   EL ++M    C P+++T N LI       ++D   +A K
Sbjct: 621 ISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRAD---LARK 677

Query: 442 LLIEMVDRGFMPRKFTFN 459
           LL EM + G  P   T +
Sbjct: 678 LLEEMTEAGLEPNDTTHD 695



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 147/324 (45%), Gaps = 38/324 (11%)

Query: 195 LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            F   R +   +V S N   +  C + R  +AL + +  + R   PN  TY I+++G+  
Sbjct: 10  FFDWARSRVGHNVFSCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSS 69

Query: 255 AGQIEEAWRFFLEMKK----------------------------------RKCEIDVVTY 280
           AG ++ A +   EMK                                   + C  DV+TY
Sbjct: 70  AGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKDCAPDVMTY 129

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
           T +VH     G+   A+ +   MV  G  P   T++ +I  LCK  S E A  V E+++ 
Sbjct: 130 TALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQ 189

Query: 341 KGYMPNSTTYNVVIRGLCHT-GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
           +G   +   +  +I+ LC+    +E A + +G +      P V  +N++I  FC A +++
Sbjct: 190 RGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLD 249

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
              +L E M    C+PN+ T+ ILI+ +    K++ +  A +LL +MV  G  P   T++
Sbjct: 250 SAYKLLEVMIEKGCVPNVFTFTILITGLC---KANRVGEAQQLLEKMVMGGCSPNVVTYS 306

Query: 460 RVLNGLLLIGNQGLAKEILRLQSR 483
            V+NGL   G    A E+ +L  R
Sbjct: 307 TVINGLCKQGQVDDAYELFQLMER 330



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 109/255 (42%), Gaps = 11/255 (4%)

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           N+ + N  L    R  + +EA   F     R C  +  TY  ++ GF   G++  A  + 
Sbjct: 21  NVFSCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLL 80

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           + M + G   +   +  +++ LC    V  A+  F  M  K   P+  TY  ++  LC  
Sbjct: 81  EEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAM-AKDCAPDVMTYTALVHALCKA 139

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM---GSGVCLPNL 417
           G+ + A   +  M    C P+  T++ LI   C  G  E+   + E +   G G    N 
Sbjct: 140 GKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMG----NS 195

Query: 418 DT-YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKE 476
           D  +  +I  +  +  S +L  A K+L  ++ +GF P    FN V+NG     +   A +
Sbjct: 196 DAAFETIIQRLCNKYNSVEL--ASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYK 253

Query: 477 ILRLQSRCGRLPRQF 491
           +L +    G +P  F
Sbjct: 254 LLEVMIEKGCVPNVF 268


>gi|326528911|dbj|BAJ97477.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 913

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 176/365 (48%), Gaps = 4/365 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           LVH M+   +      +  +   Y       + + +F  + E     S+ S+  +++L  
Sbjct: 404 LVHEMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKECCFTPSIISYGCLINLYV 463

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  KV KA  + K       K +  +Y+++ +G+  +     A  + +EM+  GL P+  
Sbjct: 464 KIGKVAKAIAISKEMESSGIKHNNKTYSMLISGFIHLHDFTNAFRIFEEMLKSGLQPDRA 523

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            YN++++ + + G ++ A R   +M+K + +     +  I+ GF V G++KRA ++ D M
Sbjct: 524 IYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALDILDLM 583

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G  P+V TYNA+I  L +K+ VE A+ V  +M   G  PN  TY +++RG   TG++
Sbjct: 584 RRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAATGDI 643

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
            +A E+  ++K+   + +V  Y  L+R  C +G ++  L +  +M S     N   YNIL
Sbjct: 644 AKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSSQKIARNTFVYNIL 703

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I     R    D+  A  L+ +M + G  P   T+   +N     G+   A+ ++   S 
Sbjct: 704 IDGWARR---GDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQTVIDEMSD 760

Query: 484 CGRLP 488
            G  P
Sbjct: 761 VGLKP 765



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 163/347 (46%), Gaps = 8/347 (2%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII 144
           K +    I   + TY+   S F H       L D+   + +   M    L P +  + ++
Sbjct: 476 KEMESSGIKHNNKTYSMLISGFIH-------LHDFTNAFRIFEEMLKSGLQPDRAIYNLL 528

Query: 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFK 204
            E +   G  DRA++I   M +   + S  +F  I++       +++A ++  + R    
Sbjct: 529 IEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALDILDLMRRSGC 588

Query: 205 A-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
           A  V++YN + +G     +  +A+ VL +M   G+ PN  TY I+++GY   G I +A+ 
Sbjct: 589 APTVMTYNALIHGLIRKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAATGDIAKAFE 648

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
           +F ++K+   ++DV  Y T++      G ++ A  V   M +  +  +   YN +I    
Sbjct: 649 YFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSSQKIARNTFVYNILIDGWA 708

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
           ++  V  A  + ++M   G  PN  TY   I   C  G+M+RA   +  M D   +PN++
Sbjct: 709 RRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQTVIDEMSDVGLKPNLK 768

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
           TY  LI+ +  A   +R L+ FE+M      P+   Y+ L++S+  R
Sbjct: 769 TYTTLIKGWARASLPDRALKCFEEMKLAGLKPDEAAYHCLVTSLLSR 815



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/405 (21%), Positives = 175/405 (43%), Gaps = 17/405 (4%)

Query: 96  HPTYAHSPSSFDHAIDLA---------ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAE 146
           H     +PS + H  D A         +R  D++ V +   R+      P+++ F ++  
Sbjct: 230 HGQGKEAPSPWHHGRDEACREFRRVVESRPEDWQAVVSAFERIPK----PSRREFGLMIV 285

Query: 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKA 205
            Y   G    A   F +M   G   +   F +++      + +  A +  +  + +  + 
Sbjct: 286 YYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCTEEMKAEGIEL 345

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
            +++Y+++ +G+  +  T  A  + KE      + N   Y+ ++  + ++G ++ A    
Sbjct: 346 TIVTYSILISGFGKINDTQSADNLFKEAKTNLGDLNGIIYSNIIHAHCQSGNMDRAEELV 405

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
            EM++   +  +  Y +++HG+ ++ + K+   VF+ +      PS+ +Y  +I +  K 
Sbjct: 406 HEMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKECCFTPSIISYGCLINLYVKI 465

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
             V  AI + +EM   G   N+ TY+++I G  H  +   A      M     +P+   Y
Sbjct: 466 GKVAKAIAISKEMESSGIKHNNKTYSMLISGFIHLHDFTNAFRIFEEMLKSGLQPDRAIY 525

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           N+LI  FC  G ++R + + EKM      P+   +  +I    V   + D+  A  +L  
Sbjct: 526 NLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAV---AGDMKRALDILDL 582

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
           M   G  P   T+N +++GL+       A  +L   S  G  P +
Sbjct: 583 MRRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMSIAGITPNE 627


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 182/344 (52%), Gaps = 9/344 (2%)

Query: 100 AHS--PSSFDHAI--DLAARLRDYRTVWTLVHRM--KSLSLGPTQKTFAIIAERYVSAGK 153
           +HS  P  F ++I  D   R  + RT+ +L      K + LG    T +I+       GK
Sbjct: 292 SHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAY--TCSILLNGLCKDGK 349

Query: 154 ADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNV 212
             +A ++   +   G   +   +NT+++  C+ + +  A+ +F+  + +  + D I+YN 
Sbjct: 350 VAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNA 409

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           + NG C ++   KA +++ EM   G++P++ T+N ++  Y  AGQ+E+ +    +M+++ 
Sbjct: 410 LINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKG 469

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
            + DV+++ ++V  F   G+I  A  + D M+   V P+   YN++I    +    E A 
Sbjct: 470 IKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAF 529

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
           L+ E+M   G   +  TYN++++GLC + +++ A E +  +++    P+V +YN +I   
Sbjct: 530 LLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISAC 589

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
           C+ G+ ++ LEL ++M      P L TY+ L+S++    +  D+
Sbjct: 590 CNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDM 633



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 179/359 (49%), Gaps = 9/359 (2%)

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
           A R+ + R    L+  M S S+ P   T++I+ +     G++   + +F    + G    
Sbjct: 277 AGRMDETRV---LMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLG 333

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVL 230
             + + +L+ LCK+ KV KA  + +  V  G     VI YN + NG+C V+    A  + 
Sbjct: 334 AYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVI-YNTLINGYCQVRDLRGAFCIF 392

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
           ++M  R + P+  TYN ++ G  +   + +A    +EM+K   +  V T+ T++  +G  
Sbjct: 393 EQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTA 452

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           G++++   V   M   G+   V ++ ++++  CK   +  A+ + ++M+ K   PN+  Y
Sbjct: 453 GQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVY 512

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           N +I     +G+ E+A   V +MK+     ++ TYN+L++  C + +I+   EL   + +
Sbjct: 513 NSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRN 572

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
               P++ +YN +IS+   +  +D  L   +LL EM   G  P   T++ +++ L   G
Sbjct: 573 QGLRPDVVSYNTIISACCNKGDTDKAL---ELLQEMNKYGIRPTLRTYHTLVSALASAG 628



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 171/357 (47%), Gaps = 8/357 (2%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFA---IIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           D      +V RM      P    F+   +IA  + S GK   A+K+F  M + G   +  
Sbjct: 172 DLDVALAMVRRMGRSEGAPPPDAFSYNVVIAGLWRS-GKGSDALKVFDEMVDMGVVPNWI 230

Query: 175 SFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           ++NT++D   K   +E  + L  ++     K ++++YNV+ +G C   R ++   ++ EM
Sbjct: 231 TYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEM 290

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
               + P+  TY+I+  G  R G+       F E  K+   +   T + +++G    G++
Sbjct: 291 ASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKV 350

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
            +A  V + +V+ G++P+   YN +I   C+   +  A  +FE+M  +   P+  TYN +
Sbjct: 351 AKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNAL 410

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           I GLC    + +A + V  M+    +P+V+T+N LI  +  AG++E+   +   M     
Sbjct: 411 INGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGI 470

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
             ++ ++  ++ +     K+  +  A  +L +M+ +   P    +N +++  +  G+
Sbjct: 471 KSDVISFGSVVKAFC---KNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGD 524



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 135/299 (45%), Gaps = 10/299 (3%)

Query: 172 SLNSFNTILDLLC---KEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
           SL+S N +L+ L    +   V  A+ L        + D  ++N +          + AL 
Sbjct: 121 SLSSCNLLLESLLFVGRHADVRAAFGLL--VAAGARPDTFAWNKVVQACVAAGDLDVALA 178

Query: 229 VLKEM--VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
           +++ M   +    P+  +YN+V+ G +R+G+  +A + F EM       + +TY T++ G
Sbjct: 179 MVRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDG 238

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
               G+++    + D M++ G  P++ TYN ++  LC+   ++   ++ +EM      P+
Sbjct: 239 HVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPD 298

Query: 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
             TY+++  GL  TGE    L                T +IL+   C  G++ +  ++ E
Sbjct: 299 GFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLE 358

Query: 407 KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            +     +P    YN LI+     +   DL  A  +  +M  R   P   T+N ++NGL
Sbjct: 359 MLVHTGLVPTTVIYNTLINGYCQVR---DLRGAFCIFEQMKSRHIRPDHITYNALINGL 414



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 73/179 (40%), Gaps = 36/179 (20%)

Query: 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
           + P  + +  I + Y+ +G  ++A  +   M   G   S+ ++N +L  LC+  ++++A 
Sbjct: 505 VAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAE 564

Query: 194 NLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN------ 246
            L    R +  + DV+SYN I +  C    T+KALE+L+EM   G+ P L TY+      
Sbjct: 565 ELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSAL 624

Query: 247 -----------------------------IVLKGYFRAGQIEEAWRFFLEMKKRKCEID 276
                                        I++  Y R     +      EM ++    D
Sbjct: 625 ASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIAFD 683



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 61/123 (49%), Gaps = 5/123 (4%)

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
           +P+ ++ N+++  L   G         G +      P+   +N +++    AG+++  L 
Sbjct: 119 LPSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALA 178

Query: 404 LFEKMG--SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
           +  +MG   G   P+  +YN++I+ ++   K  D L   K+  EMVD G +P   T+N +
Sbjct: 179 MVRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDAL---KVFDEMVDMGVVPNWITYNTM 235

Query: 462 LNG 464
           ++G
Sbjct: 236 IDG 238


>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
          Length = 820

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 174/368 (47%), Gaps = 4/368 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++ +MK L   PT + +A + + +    KA+ A KI   M + G    + +   +++  C
Sbjct: 252 MLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYC 311

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           +E ++  A  +F+  R K  + +V +YN I  G+C   +  KA+ +L +M + G+ P++ 
Sbjct: 312 REGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVV 371

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN++++G    G I  A+R    M+      D  TY  ++      G++  A ++FDG+
Sbjct: 372 TYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGL 431

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G+ P+  T+N +I  LCK    + A    E M+  GY P++ TY+  I  LC T   
Sbjct: 432 EYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKGS 491

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           +  L F+  M   + +P+   Y I+I    +         ++ +M S  C P++ TY   
Sbjct: 492 QEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTS 551

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           + +     + D+   A  ++ EM     +     +N +++G   IG    A  IL+  + 
Sbjct: 552 VRAYCNEGRLDE---AENVVTEMKKCRTIVDAMAYNTLIDGHTSIGQTDRAVTILKHMTG 608

Query: 484 CGRLPRQF 491
              +P  F
Sbjct: 609 VASMPNHF 616



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 162/339 (47%), Gaps = 8/339 (2%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           ++A + E +  AG+ D A+++F  M +      + +   ++  LC   + E+   + +  
Sbjct: 201 SYAALIEGFCEAGRIDEALELFREMTQ----PDMYTHAALVKGLCDAGRGEEGLCMLQKM 256

Query: 200 RG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
           +   ++    +Y  + + WC  ++  +A ++L EM D GL P + T  IV+  Y R G++
Sbjct: 257 KELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRM 316

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
             A R F  M+ + CE +V TY  IV GF   G++ +A  + D M   GV P V TYN +
Sbjct: 317 SGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLL 376

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           I+  C    + +A  +   M G G   +  TYNV+I  LC TG+++ A      ++    
Sbjct: 377 IRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGI 436

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
            PN  T+N +I   C AG+ +      E M S    P+  TY+  I ++   K S + L 
Sbjct: 437 RPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQEGLF 496

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
               + EM+ +   P    +  V+N L    N GLA  I
Sbjct: 497 ---FIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRI 532



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 164/367 (44%), Gaps = 8/367 (2%)

Query: 93  LSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAG 152
           L + PT      ++   +DL  R +       +++ M    L P   T  I+   Y   G
Sbjct: 259 LGWRPT----TRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREG 314

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYN 211
           +   AV++F SM   GC  ++ ++N I+   C   KV KA  L    R    + DV++YN
Sbjct: 315 RMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYN 374

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
           ++  G C+      A  +L+ M   GL  +  TYN+++    + G+++EA   F  ++ R
Sbjct: 375 LLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYR 434

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
               + VT+ T+++G    G+   A    + M++ G  P   TY+  I+ LCK    +  
Sbjct: 435 GIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQEG 494

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
           +   +EM+ K   P++  Y +VI  L +      A    G+M    C P+V TY   +R 
Sbjct: 495 LFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRA 554

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
           +C+ G ++    +  +M     + +   YN LI       ++D    A  +L  M     
Sbjct: 555 YCNEGRLDEAENVVTEMKKCRTIVDAMAYNTLIDGHTSIGQTDR---AVTILKHMTGVAS 611

Query: 452 MPRKFTF 458
           MP  FTF
Sbjct: 612 MPNHFTF 618



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 164/371 (44%), Gaps = 44/371 (11%)

Query: 158 VKIFLSMHEHGCRQSLN-SFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIAN 215
           +++F  M+ H        ++N ++  LC+   +  A     +  R  ++ D  ++N +  
Sbjct: 113 LRLFAHMYRHAPPAPTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLIL 172

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
           G+C  ++   A ++  +M  RG + +  +Y  +++G+  AG+I+EA   F EM +     
Sbjct: 173 GYCRTQQLEVAHDLFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMTQP---- 228

Query: 276 DVVTYTTIVHGFGVVG-----------------------------------EIKRARNVF 300
           D+ T+  +V G    G                                   + + A  + 
Sbjct: 229 DMYTHAALVKGLCDAGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKIL 288

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           + M + G++P V T   ++   C++  +  A+ VFE M  KG  PN  TYN +++G C+ 
Sbjct: 289 NEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNA 348

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
           G++ +A+  + +M++   EP+V TYN+LIR  C  G I     L   M       +  TY
Sbjct: 349 GKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTY 408

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           N+LI ++    K D+   A  L   +  RG  P   TFN V+NGL   G   +A   L  
Sbjct: 409 NVLIDALCKTGKVDE---ACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLEN 465

Query: 481 QSRCGRLPRQF 491
               G  P  +
Sbjct: 466 MISAGYAPDTY 476



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 156/377 (41%), Gaps = 22/377 (5%)

Query: 121 TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180
           + + L+  M+   L   Q T+ ++ +     GK D A  +F  +   G R +  +FNT++
Sbjct: 388 SAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVI 447

Query: 181 DLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
           + LCK  K + A    + +    +  D  +Y+      C  K + + L  + EM+ + + 
Sbjct: 448 NGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVK 507

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           P+   Y IV+   F       A R + +M  + C  DVVTYTT V  +   G +  A NV
Sbjct: 508 PSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEAENV 567

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR---- 355
              M     +     YN +I         + A+ + + M G   MPN  T+ +++R    
Sbjct: 568 VTEMKKCRTIVDAMAYNTLIDGHTSIGQTDRAVTILKHMTGVASMPNHFTFFILLRHLLQ 627

Query: 356 ------------GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
                        +  T E+    E    MK +    + +TY  ++  F +   ++    
Sbjct: 628 RRLAEHVPLKATSVWKTIELADVFELFELMKKNSVPSSARTYLSILEGFSEERRLDEVTS 687

Query: 404 LFEKMGSGVCLPNLDTYNILISSMF-VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           L   M       N D YN L++    +R  SD    A  LL  M+  GF+P    +  +L
Sbjct: 688 LVSLMKEENLPLNEDIYNALVNCFCKLRMYSD----AWALLCSMIGHGFLPNLIFYQYLL 743

Query: 463 NGLLLIGNQGLAKEILR 479
           +GL   G    AKEI R
Sbjct: 744 SGLTAEGQADRAKEIFR 760



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/361 (20%), Positives = 154/361 (42%), Gaps = 25/361 (6%)

Query: 91  NILS--YHP-TYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
           N++S  Y P TY +SP      I+   + +  +     +  M    + P+   + I+  R
Sbjct: 465 NMISAGYAPDTYTYSP-----FIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINR 519

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKAD 206
             +      A +I+  M   GC   + ++ T +   C E ++++A N+  ++ + +   D
Sbjct: 520 LFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCRTIVD 579

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY--------------NIVLKG- 251
            ++YN + +G   + +T++A+ +LK M      PN  T+              ++ LK  
Sbjct: 580 AMAYNTLIDGHTSIGQTDRAVTILKHMTGVASMPNHFTFFILLRHLLQRRLAEHVPLKAT 639

Query: 252 -YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
             ++  ++ + +  F  MKK        TY +I+ GF     +    ++   M    +  
Sbjct: 640 SVWKTIELADVFELFELMKKNSVPSSARTYLSILEGFSEERRLDEVTSLVSLMKEENLPL 699

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           +   YNA++   CK     +A  +   M+G G++PN   Y  ++ GL   G+ +RA E  
Sbjct: 700 NEDIYNALVNCFCKLRMYSDAWALLCSMIGHGFLPNLIFYQYLLSGLTAEGQADRAKEIF 759

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
              +  E   +   + ++I  F   G  +   ++   +    C P+ +TY +L   +  R
Sbjct: 760 RSSRWKEYNTDEIVWKVIIDGFIRKGHADMCHDMISMLEQMKCKPSDETYAMLTEELPTR 819

Query: 431 K 431
           +
Sbjct: 820 E 820


>gi|242058841|ref|XP_002458566.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
 gi|241930541|gb|EES03686.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
          Length = 796

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 167/345 (48%), Gaps = 4/345 (1%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
           V  L+  M +  L P         +    +GK + A +I+  +   G   ++ + N ++ 
Sbjct: 406 VLRLIREMLARFLKPNDALMTACIQELCKSGKHEEAAEIWFQVLGKGLGVNVATSNALIH 465

Query: 182 LLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
            LC+   +++A  + K       + D I+YN++  G C   + ++A+++  +M+ RG  P
Sbjct: 466 GLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRGFKP 525

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           +L T+NI L  Y   G++EE      +MK    + D+VTY TI+ G+    ++ +A    
Sbjct: 526 DLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKANEYL 585

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
             ++  G+ P+   YNA+I    +  ++ +AI + + M   G  P   TYN ++  +CH 
Sbjct: 586 TELMKNGLRPNAVIYNALIGGYGRNGNISDAIGILDTMKYNGIQPTPVTYNSLMYWMCHA 645

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
           G +E       +    + E  V  Y I+I+ FC  G+I+  +  F++M S    PN  TY
Sbjct: 646 GLVEEVKAVFAQCIVKDIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTY 705

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
             L   MF   KS +   A KL  EMV  G +P   ++N +++G 
Sbjct: 706 TTL---MFAYSKSGNKEEASKLFDEMVSLGIVPDSVSYNTLISGF 747



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 183/384 (47%), Gaps = 12/384 (3%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F   I   AR + +  V  ++  M+   + P +  +  +   +   G    A+K+F  M
Sbjct: 283 TFGILISGLARGQQFGEVGAVLQEMQGFGITPNEVIYNEMIGWHCRKGHCSEALKLFDEM 342

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCL--V 220
              G +Q++ ++N I   LCKE ++E A  +    +  G      +  +V+A  W L   
Sbjct: 343 VSKGIKQTVVTYNLIAKALCKEGEMEHAEKILDEMLLAGMMVHCSLFNSVVA--WHLRGT 400

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
            R +  L +++EM+ R L PN       ++   ++G+ EEA   + ++  +   ++V T 
Sbjct: 401 GRLDLVLRLIREMLARFLKPNDALMTACIQELCKSGKHEEAAEIWFQVLGKGLGVNVATS 460

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
             ++HG      +K A  V   MVN GV     TYN MIQ  CK   ++ AI + ++M+ 
Sbjct: 461 NALIHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMIK 520

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           +G+ P+  T+N+ +   C+ G++E  L  + +MK +  +P++ TY  +I  +C A ++ +
Sbjct: 521 RGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHK 580

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
             E   ++      PN   YN LI       ++ ++  A  +L  M   G  P   T+N 
Sbjct: 581 ANEYLTELMKNGLRPNAVIYNALIGGY---GRNGNISDAIGILDTMKYNGIQPTPVTYNS 637

Query: 461 VLNGLLLIGNQGLAKEILRLQSRC 484
           ++  +    + GL +E+  + ++C
Sbjct: 638 LMYWMC---HAGLVEEVKAVFAQC 658



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 178/396 (44%), Gaps = 52/396 (13%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
            D A  +   +RD +TV   VH            T+  + +    AG+ D A  +   + 
Sbjct: 191 LDVARKVFGEMRDGKTVAPDVH------------TYTAMIKALCRAGEIDAAFAMLAELR 238

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNL-FKVFRGKFKADVISYNVIANGWCLVKRTN 224
             G + ++ ++N ++D LCK  +VE+A+ L  ++  G+ +  ++++ ++ +G    ++  
Sbjct: 239 RSGIQPTVVTYNVLMDALCKSGRVEEAFRLKGRMVEGRVRPSIVTFGILISGLARGQQFG 298

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           +   VL+EM   G+ PN   YN ++  + R G   EA + F EM  +  +  VVTY  I 
Sbjct: 299 EVGAVLQEMQGFGITPNEVIYNEMIGWHCRKGHCSEALKLFDEMVSKGIKQTVVTYNLIA 358

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVL----------------------------------- 309
                 GE++ A  + D M+  G++                                   
Sbjct: 359 KALCKEGEMEHAEKILDEMLLAGMMVHCSLFNSVVAWHLRGTGRLDLVLRLIREMLARFL 418

Query: 310 -PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
            P+ A   A IQ LCK    E A  ++ +++GKG   N  T N +I GLC    M+ A +
Sbjct: 419 KPNDALMTACIQELCKSGKHEEAAEIWFQVLGKGLGVNVATSNALIHGLCQGNNMKEATK 478

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
            +  M +   E +  TYNI+I+  C A +++  ++L + M      P+L T+NI + +  
Sbjct: 479 VLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRGFKPDLFTFNIFLHTYC 538

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
              K +++L    LL +M   G  P   T+  +++G
Sbjct: 539 NLGKVEEIL---HLLDQMKSEGLKPDIVTYGTIIDG 571



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 138/289 (47%), Gaps = 1/289 (0%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           T+ I+ +    A K D A+++   M + G +  L +FN  L   C   KVE+  +L    
Sbjct: 494 TYNIMIQGCCKASKMDEAIQLRDDMIKRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQM 553

Query: 200 RGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
           + +  K D+++Y  I +G+C  K  +KA E L E++  GL PN   YN ++ GY R G I
Sbjct: 554 KSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELMKNGLRPNAVIYNALIGGYGRNGNI 613

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
            +A      MK    +   VTY ++++     G ++  + VF   +   +   V  Y  +
Sbjct: 614 SDAIGILDTMKYNGIQPTPVTYNSLMYWMCHAGLVEEVKAVFAQCIVKDIELGVIGYTII 673

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           IQ  CK   ++ A++ F+EM  +G  PN  TY  ++     +G  E A +    M     
Sbjct: 674 IQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFDEMVSLGI 733

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
            P+  +YN LI  FC+   +++ +E   +M S V   +  +YN  +  +
Sbjct: 734 VPDSVSYNTLISGFCEVDSLDKMVESPAEMSSQVLKQDGCSYNAFVDGI 782



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 102/402 (25%), Positives = 161/402 (40%), Gaps = 79/402 (19%)

Query: 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKA-DVIS 209
           G   RA   FL +   G   S+ + + +++ L    +++ A  +F   R GK  A DV +
Sbjct: 154 GSLSRAADAFLELSARGASPSIKTCSILVEALGCGGQLDVARKVFGEMRDGKTVAPDVHT 213

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           Y  +    C     + A  +L E+   G+ P + TYN+++    ++G++EEA+R    M 
Sbjct: 214 YTAMIKALCRAGEIDAAFAMLAELRRSGIQPTVVTYNVLMDALCKSGRVEEAFRLKGRMV 273

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
           + +    +VT+  ++ G     +      V   M   G+ P+   YN MI   C+K    
Sbjct: 274 EGRVRPSIVTFGILISGLARGQQFGEVGAVLQEMQGFGITPNEVIYNEMIGWHCRKGHCS 333

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA----------------------- 366
            A+ +F+EMV KG      TYN++ + LC  GEME A                       
Sbjct: 334 EALKLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEKILDEMLLAGMMVHCSLFNSVV 393

Query: 367 -------------LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL-FEKMGS-- 410
                        L  +  M     +PN       I+  C +G+ E   E+ F+ +G   
Sbjct: 394 AWHLRGTGRLDLVLRLIREMLARFLKPNDALMTACIQELCKSGKHEEAAEIWFQVLGKGL 453

Query: 411 ------------GVCLPN------------------LD--TYNILISSMFVRKKSDDLLV 438
                       G+C  N                  LD  TYNI+I       K D+ + 
Sbjct: 454 GVNVATSNALIHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAI- 512

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
             +L  +M+ RGF P  FTFN  L+      N G  +EIL L
Sbjct: 513 --QLRDDMIKRGFKPDLFTFNIFLHTYC---NLGKVEEILHL 549


>gi|326499175|dbj|BAK06078.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 566

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 110/395 (27%), Positives = 195/395 (49%), Gaps = 11/395 (2%)

Query: 83  ALKALHFFNIL-SYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLS-LGPTQ 138
           A   LH F+ L S H   A  PS  S+ + I L  +   +     L  +M   S   P  
Sbjct: 104 ASSTLHLFSALHSPHSQLAMPPSAHSYRYVISLMCQSGRHTDALQLFDQMTDQSGYFPNA 163

Query: 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK- 197
           +  + ++    +AG  D A  +     + GC     ++N ++DL     +V+ A  LF+ 
Sbjct: 164 RFLSFLSGSCAAAGLLDAAAALLSKASQFGCSIEAYAYNKLMDLFIGHGRVQDAVALFEG 223

Query: 198 -VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256
            +  G +  DV S+NV+  G C V    KALE+++ M + G +P+  T+NI++ G  RA 
Sbjct: 224 WIQGGVYSPDVWSFNVVIKGVCKVGDVQKALELVERMDEFGCSPDTVTHNILVNGLCRAK 283

Query: 257 QIEEAWRFFLEMKKRK-CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
           ++ +       +++   C  +VVTYT+++ G+   G ++ A  V++ MV  G  P+V TY
Sbjct: 284 EVSKGREVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTY 343

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           N +I    K  ++ +A+ V+++M+ +  +P+  T++ +I G C  G+++ A++    M  
Sbjct: 344 NVLINGYGKAGNMGSAVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQ 403

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL-PNLDTYNILISSMFVRKKSD 434
              +PN  T+ I+I  FC        L   +KM     + P    YN +I  +    K D
Sbjct: 404 YHIQPNAHTFCIIIHTFCKQNRSGEALHFLKKMNMRTDIAPQAFIYNPVIDVLCKGGKVD 463

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
           +   A  +LIEM ++G  P K+T+  ++ G  + G
Sbjct: 464 E---ANMILIEMEEKGCRPDKYTYTILIIGHCMKG 495



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 147/296 (49%), Gaps = 3/296 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   +F ++ +     G   +A+++   M E GC     + N +++ LC+ K+V K   +
Sbjct: 232 PDVWSFNVVIKGVCKVGDVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREV 291

Query: 196 FKVFR--GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
            +  +  G    +V++Y  + +G+C   R   A+ V  +MV  G +PN+ TYN+++ GY 
Sbjct: 292 LRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYG 351

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
           +AG +  A   + +M  R+C  DVVT+++++ G+   G++  A  ++  M    + P+  
Sbjct: 352 KAGNMGSAVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAH 411

Query: 314 TYNAMIQVLCKKDSVENAILVFEEM-VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
           T+  +I   CK++    A+   ++M +     P +  YN VI  LC  G+++ A   +  
Sbjct: 412 TFCIIIHTFCKQNRSGEALHFLKKMNMRTDIAPQAFIYNPVIDVLCKGGKVDEANMILIE 471

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
           M++  C P+  TY ILI   C  G I   +  F KM    C P+    N  IS + 
Sbjct: 472 MEEKGCRPDKYTYTILIIGHCMKGRIAEAVTFFHKMVETGCSPDSIVVNSFISCLL 527



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 94/168 (55%), Gaps = 5/168 (2%)

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKG-YMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            YN ++ +      V++A+ +FE  +  G Y P+  ++NVVI+G+C  G++++ALE V R
Sbjct: 200 AYNKLMDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNVVIKGVCKVGDVQKALELVER 259

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG-SGVCLPNLDTYNILISSMFVRK 431
           M +  C P+  T+NIL+   C A E+ +G E+  ++   GVC+PN+ TY  +IS      
Sbjct: 260 MDEFGCSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDGVCMPNVVTYTSVISGYCKAG 319

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           + +D +    +  +MV  G  P   T+N ++NG    GN G A  + +
Sbjct: 320 RMEDAMA---VYNDMVAVGTSPNVVTYNVLINGYGKAGNMGSAVAVYQ 364



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 5/178 (2%)

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGK-GYMPNSTTYNVVIRGLCHTGEMERALE 368
           PS  +Y  +I ++C+     +A+ +F++M  + GY PN+   + +       G ++ A  
Sbjct: 125 PSAHSYRYVISLMCQSGRHTDALQLFDQMTDQSGYFPNARFLSFLSGSCAAAGLLDAAAA 184

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK-MGSGVCLPNLDTYNILISSM 427
            + +     C      YN L+  F   G ++  + LFE  +  GV  P++ ++N++I  +
Sbjct: 185 LLSKASQFGCSIEAYAYNKLMDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNVVIKGV 244

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
               K  D+  A +L+  M + G  P   T N ++NGL         +E+LR   R G
Sbjct: 245 C---KVGDVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDG 299


>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
          Length = 913

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 176/357 (49%), Gaps = 8/357 (2%)

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
           A R+ +   +W ++ +        T  ++ I+        K D A+ I+  + E  C   
Sbjct: 313 AGRIEECLELWKVMEKEGC----RTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCAD 368

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLK 231
             ++  ++  LCK   + KA ++ +    G+   D  +Y+ + NG C   R ++   VL 
Sbjct: 369 SMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLD 428

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
           +M   G  PN    N V+ G+ RA ++E+A RFF  M  + C   VVTY T+++G     
Sbjct: 429 QMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAE 488

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
               A  +   M+  G  P++ TY+ ++  LC+   ++ A+ ++ + + KG+ P+   +N
Sbjct: 489 RFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHN 548

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
           ++I GLC +G++E AL+    MK   C PN+ T+N L+  F    + ER  ++++ +   
Sbjct: 549 IIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQY 608

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
              P++ +YNI +  +    +  D   A   L + VDRG +P   T+N ++ G L +
Sbjct: 609 GLQPDIISYNITLKGLCSCHRISD---AVGFLNDAVDRGVLPTAITWNILVQGYLAL 662



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 106/430 (24%), Positives = 196/430 (45%), Gaps = 40/430 (9%)

Query: 71  LVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMK 130
           L+D   K+     L A   +  L   P+   +  S++  I+   +   +   + + HRMK
Sbjct: 200 LIDGFFKK--GDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMK 257

Query: 131 SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190
               G    T++ +      +G  D A +++  M E+G    +  +NT+L+   +  ++E
Sbjct: 258 KNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIE 317

Query: 191 KAYNLFKVFRGKFKADVISYN-----------------------------------VIAN 215
           +   L+KV   +    V+SYN                                   V+ +
Sbjct: 318 ECLELWKVMEKEGCRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVH 377

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
           G C     NKAL +L+E  +   + +   Y+ ++ G  R G+++E      +M K  C+ 
Sbjct: 378 GLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKP 437

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
           +      +++GF    +++ A   F  MV+ G  P+V TYN +I  L K +    A  + 
Sbjct: 438 NPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALV 497

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
           +EM+ KG+ PN  TY++++ GLC   +++ AL    +  +   +P+V+ +NI+I   C +
Sbjct: 498 KEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSS 557

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
           G++E  L+L+ +M    C+PNL T+N L+   +   K  D   A K+   ++  G  P  
Sbjct: 558 GKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFY---KVRDFERASKIWDHILQYGLQPDI 614

Query: 456 FTFNRVLNGL 465
            ++N  L GL
Sbjct: 615 ISYNITLKGL 624



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 115/423 (27%), Positives = 204/423 (48%), Gaps = 36/423 (8%)

Query: 68  TPQLVDQIIKRLWN-HALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLV 126
           +P+ V +++K   N H+  AL  F+ ++  P Y+H+P  F H +    RL D +      
Sbjct: 9   SPKRVIKLLKSEKNPHS--ALSIFDSVTRFPGYSHTPYVFHHIL---KRLFDPK------ 57

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE-HGCRQSLNSFNTILDLLCK 185
                           ++A  Y      D+A+ IF  MHE  GC+  + S+N++L+ L +
Sbjct: 58  ----------------LVAHAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIE 101

Query: 186 EKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
             K ++A + F  F       ++ +YN++    C  K+ +KA E+L  M  +G +P++ +
Sbjct: 102 SNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWGQGFSPDVFS 161

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           Y  ++    + G + +A + F EM +R    DV  Y  ++ GF   G+I  A  +++ ++
Sbjct: 162 YGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLL 221

Query: 305 NG-GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            G  V P++ +YN MI  LCK    + +  ++  M       +  TY+ +I GLC +G +
Sbjct: 222 KGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNL 281

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A      M ++   P+V  YN ++  +  AG IE  LEL++ M    C   + +YNIL
Sbjct: 282 DGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGC-RTVVSYNIL 340

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I  +F   K D+ +   +LL E   +       T+  +++GL   G    A  IL  ++ 
Sbjct: 341 IRGLFENAKVDEAISIWELLPE---KDCCADSMTYGVLVHGLCKNGYLNKALSILE-EAE 396

Query: 484 CGR 486
            GR
Sbjct: 397 NGR 399


>gi|225464410|ref|XP_002269194.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic [Vitis vinifera]
          Length = 929

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 178/365 (48%), Gaps = 4/365 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           LV  M+   +      +  + + Y   G  ++ + +F  + E G   S+ S+  +++L  
Sbjct: 416 LVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKECGFTPSVISYGCLINLYI 475

Query: 185 KEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  KV KA  + K+      K ++ +Y+++ NG+  +K    A  V +++V  GL P++ 
Sbjct: 476 KIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAVFEDVVKDGLKPDVV 535

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            YN +++ +   G ++ A R   EM+K +      T+  I+HGF   G+++RA  +FD M
Sbjct: 536 LYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSGDMRRALEIFDMM 595

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G +P+V T+NA+I  L +K  +E A+ + +EM   G  PN  TY  ++ G    G+ 
Sbjct: 596 RWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHTYTTIMHGYASLGDT 655

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
            +A E+  ++K +  E +V TY  L++  C +G ++  L +  +M S     N   YNIL
Sbjct: 656 GKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMSSQKIPRNTFVYNIL 715

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I     R    D+  A +L+ +M   G  P   T+   +N     G+   A + ++    
Sbjct: 716 IDGWARR---GDVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQRATKTIQEMEV 772

Query: 484 CGRLP 488
            G  P
Sbjct: 773 VGVKP 777



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 171/376 (45%), Gaps = 4/376 (1%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           S   F   +   AR  D          M++  + PT   +  +   Y      + A+   
Sbjct: 288 SRKEFGLMVTYYARRGDMHHARGTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSCV 347

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLV 220
             M E G   SL +++ ++    K    E A + FK  + +    + I Y  I    C  
Sbjct: 348 RKMKEEGIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNIIYAHCQA 407

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
               +A  +++EM + G++  +  Y+ ++ GY   G  E+    F  +K+      V++Y
Sbjct: 408 CNMTQAEALVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKECGFTPSVISY 467

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
             +++ +  +G++ +A  V   M   G+  ++ TY+ +I    +     NA  VFE++V 
Sbjct: 468 GCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAVFEDVVK 527

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
            G  P+   YN +IR  C  G M+RA+  V  M+ +   P  +T+  +I  F  +G++ R
Sbjct: 528 DGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSGDMRR 587

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
            LE+F+ M    C+P + T+N LI  +  + + +    A ++L EM   G  P + T+  
Sbjct: 588 ALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEK---AVEILDEMSLAGISPNEHTYTT 644

Query: 461 VLNGLLLIGNQGLAKE 476
           +++G   +G+ G A E
Sbjct: 645 IMHGYASLGDTGKAFE 660



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 168/375 (44%), Gaps = 39/375 (10%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           R+K     P+  ++  +   Y+  GK  +A+++   M   G + ++ +++ +++   + K
Sbjct: 454 RLKECGFTPSVISYGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLK 513

Query: 188 KVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
               A+ +F+ V +   K DV+ YN I   +C +   ++A+  +KEM      P   T+ 
Sbjct: 514 DWANAFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFM 573

Query: 247 IVLKGYFRAGQIEEAWRFFLEMK------------------KRKCEIDVV---------- 278
            ++ G+ R+G +  A   F  M+                    KC+++            
Sbjct: 574 PIIHGFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLA 633

Query: 279 -------TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
                  TYTTI+HG+  +G+  +A   F  +   G+   V TY A+++  CK   +++A
Sbjct: 634 GISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSA 693

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
           + V  EM  +    N+  YN++I G    G++  A E + +MK +  +P++ TY   I  
Sbjct: 694 LAVTREMSSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINA 753

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
            C AG+++R  +  ++M      PN+ TY  LI         +  L   K   EM   G 
Sbjct: 754 CCKAGDMQRATKTIQEMEVVGVKPNIKTYTTLIHGWARASLPEKAL---KCFQEMKSAGL 810

Query: 452 MPRKFTFNRVLNGLL 466
            P K  ++ ++  LL
Sbjct: 811 KPDKAVYHCLMTSLL 825



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 165/352 (46%), Gaps = 4/352 (1%)

Query: 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           H+  ++   I+   RL+D+   + +   +    L P    +  I   +   G  DRA++ 
Sbjct: 497 HNMKTYSMLINGFVRLKDWANAFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRT 556

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCL 219
              M +   R +  +F  I+    +   + +A  +F + R       V ++N +  G   
Sbjct: 557 VKEMQKERHRPTTRTFMPIIHGFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVE 616

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
             +  KA+E+L EM   G++PN  TY  ++ GY   G   +A+ +F ++K    E+DV T
Sbjct: 617 KCQMEKAVEILDEMSLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYT 676

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y  ++      G ++ A  V   M +  +  +   YN +I    ++  V  A  + ++M 
Sbjct: 677 YEALLKACCKSGRMQSALAVTREMSSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMK 736

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            +G  P+  TY   I   C  G+M+RA + +  M+    +PN++TY  LI  +  A   E
Sbjct: 737 QEGVQPDIHTYTSFINACCKAGDMQRATKTIQEMEVVGVKPNIKTYTTLIHGWARASLPE 796

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKK-SDDLLVAGKLLI--EMVD 448
           + L+ F++M S    P+   Y+ L++S+  R   +++ + +G + I  EM++
Sbjct: 797 KALKCFQEMKSAGLKPDKAVYHCLMTSLLSRASVAEEYIYSGVVGICREMIE 848



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 113/282 (40%), Gaps = 38/282 (13%)

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
           + + +  +R   P+   + +++  Y R G +  A   F  M+ R  E     YT+++H +
Sbjct: 275 QAVVQAFERIKKPSRKEFGLMVTYYARRGDMHHARGTFESMRARGIEPTSHVYTSLIHAY 334

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
            V  +++ A +    M   G+  S+ TY+ ++    K    E A   F+E   +    N+
Sbjct: 335 AVGRDMEEALSCVRKMKEEGIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERHTTLNA 394

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDD------------------------------- 376
             Y  +I   C    M +A   V  M+++                               
Sbjct: 395 IIYGNIIYAHCQACNMTQAEALVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDR 454

Query: 377 --EC--EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
             EC   P+V +Y  LI  +   G++ + LE+ + M       N+ TY++LI+  FVR K
Sbjct: 455 LKECGFTPSVISYGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLING-FVRLK 513

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
             D   A  +  ++V  G  P    +N ++     +GN   A
Sbjct: 514 --DWANAFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRA 553



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 35/202 (17%), Positives = 81/202 (40%), Gaps = 6/202 (2%)

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
           ++   +   M S  +      + I+ + +   G    A ++   M + G +  ++++ + 
Sbjct: 691 QSALAVTREMSSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSF 750

Query: 180 LDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           ++  CK   +++A    +       K ++ +Y  + +GW       KAL+  +EM   GL
Sbjct: 751 INACCKAGDMQRATKTIQEMEVVGVKPNIKTYTTLIHGWARASLPEKALKCFQEMKSAGL 810

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFF----LEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
            P+   Y+ ++        + E + +     +  +  +CE+  V   T VH    + +I+
Sbjct: 811 KPDKAVYHCLMTSLLSRASVAEEYIYSGVVGICREMIECEL-TVDMGTAVHWSKCLRKIE 869

Query: 295 RARNVFDGMVNGGVLPSVATYN 316
           R        +     P   +YN
Sbjct: 870 RTGGELTEALQKTFPPDWNSYN 891


>gi|326506436|dbj|BAJ86536.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 616

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 175/403 (43%), Gaps = 52/403 (12%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           T++  M       T     +I E     G    AV+    +H  GC     + N ++  +
Sbjct: 129 TVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRALQVLHAKGCTLDSGNCNLVVSAI 188

Query: 184 CKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMV-------- 234
           C++  V++   L +       + D++SYN +  G C+ KR +   E++ EMV        
Sbjct: 189 CEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVHEALSQ 248

Query: 235 -------------------------------------DRGLNPNLTTYNIVLKGYFRAGQ 257
                                                  GL PN+  YN VLKG   A +
Sbjct: 249 MPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAER 308

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
            EEA     EM +  C +D VT+  +V  F   G + R   + + M+  G +P V TY  
Sbjct: 309 WEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTT 368

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           +I   CK+  V+ A+++ + M   G  PN+ +Y +V++GLC       A E +  M    
Sbjct: 369 VINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQG 428

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
           C PN  T+N LI + C  G  E+ +EL ++M    C P+L +Y+ +I  +    K+++ L
Sbjct: 429 CLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEAL 488

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
              +LL  M+++G  P    ++ + + L     +G   +I+++
Sbjct: 489 ---ELLNVMINKGITPNTIIYSSMASAL---SREGRTDKIIQM 525



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 161/351 (45%), Gaps = 8/351 (2%)

Query: 63  PSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDYR 120
           P L     ++D I K   +         +ILS  P+Y   P+   ++  +        + 
Sbjct: 256 PDLRMYATIIDGICKDGHHEVAN-----DILSRMPSYGLKPNVVCYNTVLKGLCSAERWE 310

Query: 121 TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180
               L+  M          TF I+ + +   G  DR +++   M EHGC   + ++ T++
Sbjct: 311 EAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVI 370

Query: 181 DLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
           +  CKE  V++A  L K       K + ISY ++  G C  +R   A E++  M+ +G  
Sbjct: 371 NGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCL 430

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           PN  T+N ++    + G  E+A     +M    C  D+++Y+T++ G G  G+ + A  +
Sbjct: 431 PNPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALEL 490

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
            + M+N G+ P+   Y++M   L ++   +  I +F+ +       ++  YN VI  LC 
Sbjct: 491 LNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCK 550

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
             E +RA++F   M  + C PN  TY ILIR     G +    +L  ++ S
Sbjct: 551 RWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVREAQDLLSELCS 601



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 159/349 (45%), Gaps = 40/349 (11%)

Query: 126 VHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185
           + +M      P  + +A I +     G  + A  I   M  +G + ++  +NT+L  LC 
Sbjct: 246 LSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCS 305

Query: 186 EKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
            ++ E+A +L  ++F+     D +++N++ + +C     ++ +E+L++M++ G  P++ T
Sbjct: 306 AERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVIT 365

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           Y  V+ G+ + G ++EA      M    C+ + ++YT ++ G         A+ +   M+
Sbjct: 366 YTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMI 425

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
             G LP+  T+N +I  +CKK   E AI + ++M+  G  P+  +Y+ VI GL   G+ E
Sbjct: 426 QQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTE 485

Query: 365 RALEFVGRMKDDECEPN-----------------------------------VQTYNILI 389
            ALE +  M +    PN                                      YN +I
Sbjct: 486 EALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVI 545

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI----SSMFVRKKSD 434
              C   E +R ++ F  M S  C+PN  TY ILI    S   VR+  D
Sbjct: 546 SSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVREAQD 594



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 123/294 (41%), Gaps = 13/294 (4%)

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           +Y  I    C       AL VL EM  RG        +++L+   R G    A R    +
Sbjct: 110 TYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRALQVL 169

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC---KK 325
             + C +D      +V      G +     +   + + G  P + +YNA+++ LC   + 
Sbjct: 170 HAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRW 229

Query: 326 DSVENAIL-------VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           D VE  ++          +M   G  P+   Y  +I G+C  G  E A + + RM     
Sbjct: 230 DDVEELMVEMVRVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGL 289

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
           +PNV  YN +++  C A   E   +L  +M    C  +  T+NIL+   F +    D ++
Sbjct: 290 KPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILV-DFFCQNGLVDRVI 348

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQFK 492
             +LL +M++ G +P   T+  V+NG    G    A  +L+  S CG  P    
Sbjct: 349 --ELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTIS 400



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 104/218 (47%), Gaps = 1/218 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M +    P   ++ I+ +    A +   A ++   M + GC  +  +FNT+++ +C
Sbjct: 385 LLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMC 444

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K+   E+A  L K +       D+ISY+ + +G     +T +ALE+L  M+++G+ PN  
Sbjct: 445 KKGLAEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTI 504

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            Y+ +     R G+ ++  + F  ++      D   Y  ++       E  RA + F  M
Sbjct: 505 IYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYM 564

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
           V+ G +P+ +TY  +I+ L  +  V  A  +  E+  +
Sbjct: 565 VSNGCMPNESTYTILIRGLASEGLVREAQDLLSELCSR 602



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 102/212 (48%), Gaps = 16/212 (7%)

Query: 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE 336
           VV Y  ++ G+   G++  AR +   +    V P+  TY  +++ LC +  + +A+ V +
Sbjct: 76  VVAYNAMIAGYCRAGQVAAARRLAAAV---PVPPNAYTYFPIVRSLCARGLIADALTVLD 132

Query: 337 EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
           EM  +G        +V++   C  G    A+  +  +    C  +    N+++   C+ G
Sbjct: 133 EMPLRGCAATPPMCHVILEAACRGGGFRSAVRALQVLHAKGCTLDSGNCNLVVSAICEQG 192

Query: 397 EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV--------- 447
            ++ G+EL  K+ S  C P++ +YN ++  + + K+ DD+    +L++EMV         
Sbjct: 193 CVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDV---EELMVEMVRVHEALSQM 249

Query: 448 -DRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
            + G  P    +  +++G+   G+  +A +IL
Sbjct: 250 PEHGCTPDLRMYATIIDGICKDGHHEVANDIL 281



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 86/226 (38%), Gaps = 43/226 (19%)

Query: 103 PSSFDHAIDLAARLRDYRTV--WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P++  + I L    R  R V    L+  M      P   TF  +       G A++A+++
Sbjct: 396 PNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIEL 455

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK------------------ 202
              M  +GC   L S++T++D L K  K E+A  L  V   K                  
Sbjct: 456 LKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSR 515

Query: 203 ------------------FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
                              ++D   YN + +  C    T++A++    MV  G  PN +T
Sbjct: 516 EGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNEST 575

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
           Y I+++G    G + EA     E+  R+          +V  FG+V
Sbjct: 576 YTILIRGLASEGLVREAQDLLSELCSRR-----AVRKHLVRHFGIV 616


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/439 (25%), Positives = 199/439 (45%), Gaps = 41/439 (9%)

Query: 69  PQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHR 128
           P+LV  +I+RL +  + ALH+F  +       HSP +++  + L AR R+   +  ++  
Sbjct: 99  PELVVGVIRRLKDVRV-ALHYFRWVERKTKQLHSPEAYNALLMLMARTRNLEYLEQILEE 157

Query: 129 MKSLSLGPTQKTFAIIAERYV-----------------------------------SAGK 153
           M     GP+  T   +   +V                                   +A +
Sbjct: 158 MSMAGFGPSNNTCIEMVASFVKSRKLREAFGVIETMRKFKFRPAYSAYTTLIGALSAAHE 217

Query: 154 ADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNV 212
           AD  + +   M E G   +++ F T++ +  +E +V+ A +L    +   F AD++ YNV
Sbjct: 218 ADPMLTLLRQMQEIGYEVTVHLFTTLICVFAREGRVDAALSLLDEMKSNSFNADLVLYNV 277

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
             + +  V + + A +   E+  +GL P+  T+  ++    +A +++EA   F E+   K
Sbjct: 278 CIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNK 337

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
               V  Y T++ G+G VG+   A ++ +     G +PSV  YN ++  L +K  VE A+
Sbjct: 338 SVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEAL 397

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
            + E M      PN T+YN++I  LC  GE+E AL+    MK+    PN+ T NI+I   
Sbjct: 398 RILEAMKMDA-APNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRL 456

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
           C A  ++    +F  +   VC P+  T+  LI  +    K +D   A  L  +M+D G  
Sbjct: 457 CKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVND---AYMLYEKMLDSGQT 513

Query: 453 PRKFTFNRVLNGLLLIGNQ 471
           P    +  ++      G +
Sbjct: 514 PNAVVYTSLIRNFFKCGRK 532



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 166/379 (43%), Gaps = 36/379 (9%)

Query: 96  HPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKAD 155
           H        +F   ID   R       + L  +M      P    +  +   +   G+ +
Sbjct: 474 HKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKE 533

Query: 156 RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK------------------ 197
              KI+  M   GC   L   N  +D + K  ++EK   LF+                  
Sbjct: 534 DGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILI 593

Query: 198 --VFRGKFKADVI----------------SYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
             + +G F  D                  +YN++ +G+C   + NKA ++L+EM  +GL 
Sbjct: 594 HGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQ 653

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           P + TY  V+ G  +  +++EA+  F E K +  +++VV Y++++ GFG VG I  A  +
Sbjct: 654 PTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLI 713

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
            + ++  G+ P+  T+N ++  L K + ++ A++ F+ M      PN  TY++++ GLC 
Sbjct: 714 LEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCK 773

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419
             +  +A  F   M+    +PN  TY  +I      G +    +LFE+  S   +P+   
Sbjct: 774 VRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNVLEAKDLFERFKSSGGIPDSAC 833

Query: 420 YNILISSMFVRKKSDDLLV 438
           YN +I  +    K+ D  +
Sbjct: 834 YNAMIEGLSNANKAMDAYI 852



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 104/421 (24%), Positives = 183/421 (43%), Gaps = 39/421 (9%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           +S++  ID+  +  +      +   MK   L P   T  I+ +R   A + D A  IFL 
Sbjct: 412 TSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLG 471

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKR 222
           +    C     +F +++D L +  KV  AY L+ K+       + + Y  +   +    R
Sbjct: 472 LDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGR 531

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE----------------------- 259
                ++ KEM+ RG +P+L   N  +   F+AG+IE                       
Sbjct: 532 KEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSI 591

Query: 260 ------------EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
                       + ++ F EMK++   +D   Y  ++ GF   G++ +A  + + M   G
Sbjct: 592 LIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKG 651

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           + P+V TY ++I  L K D ++ A ++FEE   K    N   Y+ +I G    G ++ A 
Sbjct: 652 LQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAY 711

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
             +  +      PN  T+N L+     A EI+  L  F+ M +  C PN  TY+I+++ +
Sbjct: 712 LILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGL 771

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
              +K +   V  +   EM  +G  P   T+  +++GL  +GN   AK++       G +
Sbjct: 772 CKVRKFNKAFVFWQ---EMQKQGLKPNTITYTTMISGLARVGNVLEAKDLFERFKSSGGI 828

Query: 488 P 488
           P
Sbjct: 829 P 829



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 101/398 (25%), Positives = 176/398 (44%), Gaps = 38/398 (9%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII------AER------------ 147
           ++  ID   ++      W   H +KS  L P   TF  +      AER            
Sbjct: 275 YNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELD 334

Query: 148 -----------------YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190
                            Y S GK + A  +       GC  S+ ++N IL  L ++ KVE
Sbjct: 335 SNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVE 394

Query: 191 KAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250
           +A  + +  +     ++ SYN++ +  C       AL+V   M + GL PN+ T NI++ 
Sbjct: 395 EALRILEAMKMDAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMID 454

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
              +A +++EA   FL +  + C  D VT+ +++ G G  G++  A  +++ M++ G  P
Sbjct: 455 RLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTP 514

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           +   Y ++I+   K    E+   +++EM+ +G  P+    N  +  +   GE+E+     
Sbjct: 515 NAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALF 574

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
             +K     P+V++Y+ILI      G  +   +LF +M       +   YNI+I      
Sbjct: 575 EEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFC-- 632

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
            KS  +  A +LL EM  +G  P   T+  V++GL  I
Sbjct: 633 -KSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKI 669



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 112/253 (44%), Gaps = 6/253 (2%)

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
           ++L+EM   G  P+  T   ++  + ++ ++ EA+     M+K K       YTT++   
Sbjct: 153 QILEEMSMAGFGPSNNTCIEMVASFVKSRKLREAFGVIETMRKFKFRPAYSAYTTLIGAL 212

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
               E      +   M   G   +V  +  +I V  ++  V+ A+ + +EM    +  + 
Sbjct: 213 SAAHEADPMLTLLRQMQEIGYEVTVHLFTTLICVFAREGRVDAALSLLDEMKSNSFNADL 272

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
             YNV I      G+++ A +F   +K     P+  T+  +I   C A  ++  +ELFE+
Sbjct: 273 VLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEE 332

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467
           + S   +P +  YN +I       K ++   A  LL     +G +P    +N +L  L  
Sbjct: 333 LDSNKSVPCVYAYNTMIMGYGSVGKFNE---AYSLLERQKRKGCIPSVIAYNCILTCL-- 387

Query: 468 IGNQGLAKEILRL 480
            G +G  +E LR+
Sbjct: 388 -GRKGKVEEALRI 399



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/171 (20%), Positives = 78/171 (45%), Gaps = 1/171 (0%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           +   ID   ++      + ++  +    L P   T+  + +  V A + D A+  F +M 
Sbjct: 694 YSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMK 753

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTN 224
              C  +  +++ +++ LCK +K  KA+  ++  + +  K + I+Y  + +G   V    
Sbjct: 754 NLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNVL 813

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
           +A ++ +     G  P+   YN +++G   A +  +A+  F E + + C I
Sbjct: 814 EAKDLFERFKSSGGIPDSACYNAMIEGLSNANKAMDAYILFEETRLKGCRI 864


>gi|297820986|ref|XP_002878376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324214|gb|EFH54635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 498

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 112/405 (27%), Positives = 199/405 (49%), Gaps = 21/405 (5%)

Query: 59  TLHCPSLHWTPQLVDQIIKRLW---NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAAR 115
           T H P    +P+ V +++  L+   ++ LKAL FF         + +  SF+  + + AR
Sbjct: 56  TKHIPLSSLSPEFVSEVLGSLFAAHSNGLKALEFFKYSLKSSNSSPTSDSFEKTLHILAR 115

Query: 116 LRDYRTVWTLVHRMKS-----LSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCR 170
           +R +   W L+  ++      LS     K+ +II  +    G  +  ++ F+ M +   R
Sbjct: 116 MRYFDQAWALMAEIRKDYPDLLSF----KSMSIILCKIAKFGSYEETLEAFVKMEKEIFR 171

Query: 171 Q--SLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
           +   ++ FN +L   C E+++++A ++F+    +FK DV + N++  G+           
Sbjct: 172 KKFGVDEFNILLRAFCTEREMKEARSIFEKLHSRFKPDVKTMNILLLGFKEAGDITATEL 231

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
              EMV RG  PN  TY I + G+ +     EA R F +M ++   I V   TT++HG G
Sbjct: 232 FYHEMVKRGFKPNSVTYGIRIDGFCKKRNFGEALRLFEDMDRQDIYITVQILTTLIHGSG 291

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
           VV    +AR +FD +   G+ P    YNA++  L K   V +AI V +EM  K   P+S 
Sbjct: 292 VVRNKIKARQLFDEIPKRGLTPDCGAYNALMSSLMKCGDVSDAIKVMKEMEEKEIEPDSV 351

Query: 349 TYNVVIRGLCHTGE--MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
           T++ +  G+  + E       E+  +MK+    P   T  +L++ FC  GE+  GL+L++
Sbjct: 352 TFHSMFIGMMKSKEFGFSGVCEYYQKMKERSLVPKTPTVVMLMKLFCQNGEVNLGLDLWK 411

Query: 407 KM-GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450
            M   G C P+     +L +++  R++++D     +   + V+RG
Sbjct: 412 YMLEKGYC-PHGHALELLTTALCARRRANDAFECSR---QTVERG 452



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 9/134 (6%)

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDD--ECEPNVQTYNILIRYFCDAGEIERGLELFE 406
           + ++++  +   G  E  LE   +M+ +    +  V  +NIL+R FC   E++    +FE
Sbjct: 141 SMSIILCKIAKFGSYEETLEAFVKMEKEIFRKKFGVDEFNILLRAFCTEREMKEARSIFE 200

Query: 407 KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
           K+ S    P++ T NIL+      K++ D+        EMV RGF P   T+   ++G  
Sbjct: 201 KLHSRF-KPDVKTMNILLLGF---KEAGDITATELFYHEMVKRGFKPNSVTYGIRIDGFC 256

Query: 467 LIGNQGLAKEILRL 480
              N G   E LRL
Sbjct: 257 KKRNFG---EALRL 267


>gi|242047600|ref|XP_002461546.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
 gi|241924923|gb|EER98067.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
          Length = 532

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 120/431 (27%), Positives = 192/431 (44%), Gaps = 76/431 (17%)

Query: 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG--C 169
           L A+ R    +  ++ RM  L   P   +++ + +   +  K + A ++   M E G  C
Sbjct: 58  LCAKKRTSDAMNIVLRRMPELGCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDGDNC 117

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
              + S++T++    KE  V KAY LF K+       +V++ N + +G C V+  +KA  
Sbjct: 118 PPDVVSYSTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEA 177

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR-------------KC-- 273
           VL++M+D  + PN TTYN ++ GY  +GQ  EA R   EM +               C  
Sbjct: 178 VLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLC 237

Query: 274 ---------EI-----------DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
                    EI           D  TY +++HG+   G +    NV D MV  G+  +  
Sbjct: 238 KSGFHAEAREIFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNGMRSNHH 297

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           T++  I   CK   ++ A L F +M   G+MP+  TY  VI GLC  G ++ A+    +M
Sbjct: 298 TFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQM 357

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELF-EKMGSGV-------------------- 412
            DD   PN+ T+  LI  F   G+ E+  ELF E M  G+                    
Sbjct: 358 IDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPDVTIFTAMIDRLFKEGKV 417

Query: 413 --------------CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
                           PN+ +YN +I   F+  +  +++   KLL +M+  G  P   TF
Sbjct: 418 TEAQKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVM---KLLDDMLLIGLKPTAVTF 474

Query: 459 NRVLNGLLLIG 469
           N +L+G++ +G
Sbjct: 475 NTLLDGMVSMG 485



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 115/445 (25%), Positives = 205/445 (46%), Gaps = 25/445 (5%)

Query: 41  AALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYA 100
           AAL  +I T          L   ++ +TP L     K+  + A+       +L   P   
Sbjct: 34  AALGQIIKTG---------LRADAVAFTPLLRTLCAKKRTSDAMNI-----VLRRMPELG 79

Query: 101 HSPSSFDHAIDLAARLRDYRT--VWTLVHRM--KSLSLGPTQKTFAIIAERYVSAGKADR 156
            +P  F ++  L     + +      L+H M     +  P   +++ +   +   G   +
Sbjct: 80  CTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPDVVSYSTVIHGFFKEGDVGK 139

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIAN 215
           A  +F  M +HG   ++ + N+++D LCK + ++KA  + + +       +  +YN + +
Sbjct: 140 AYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIH 199

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
           G+    +  +A+ +LKEM   G  PN+ TYN+++    ++G   EA   F  M +   + 
Sbjct: 200 GYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCKSGFHAEAREIFNSMIQSGPKP 259

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
           D  TY +++HG+   G +    NV D MV  G+  +  T++  I   CK   ++ A L F
Sbjct: 260 DATTYGSLLHGYATEGNLVEMNNVKDLMVQNGMRSNHHTFSIEIYAYCKCGRLDEASLTF 319

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
            +M   G+MP+  TY  VI GLC  G ++ A+    +M DD   PN+ T+  LI  F   
Sbjct: 320 IKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMY 379

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
           G+ E+  ELF +M      P++  +  +I  +F   K  +   A KL   M   G  P  
Sbjct: 380 GKWEKAEELFYEMMDRGIPPDVTIFTAMIDRLFKEGKVTE---AQKLFDLMPRAGAKPNV 436

Query: 456 FTFNRVLNGLLLIGNQGLAKEILRL 480
            ++N +++G  + G  G   E+++L
Sbjct: 437 VSYNTMIHGYFIAGEVG---EVMKL 458



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 166/359 (46%), Gaps = 1/359 (0%)

Query: 107 DHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE 166
           +  ID   +++       ++ +M    + P   T+  +   Y+S+G+   AV+I   M  
Sbjct: 160 NSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSR 219

Query: 167 HGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNK 225
            G R ++ ++N ++D LCK     +A  +F  + +   K D  +Y  + +G+       +
Sbjct: 220 DGQRPNVVTYNMLIDCLCKSGFHAEAREIFNSMIQSGPKPDATTYGSLLHGYATEGNLVE 279

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
              V   MV  G+  N  T++I +  Y + G+++EA   F++M++     D+VTYTT++ 
Sbjct: 280 MNNVKDLMVQNGMRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVID 339

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
           G   +G +  A + F  M++ G+ P++ T+  +I         E A  +F EM+ +G  P
Sbjct: 340 GLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPP 399

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           + T +  +I  L   G++  A +    M     +PNV +YN +I  +  AGE+   ++L 
Sbjct: 400 DVTIFTAMIDRLFKEGKVTEAQKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLL 459

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           + M      P   T+N L+  M       D+     L+    + G +    T  R + G
Sbjct: 460 DDMLLIGLKPTAVTFNTLLDGMVSMGLKPDVDTCKTLIDSCCEDGRIEDILTLFREMLG 518



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 119/233 (51%), Gaps = 20/233 (8%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KV 198
           TF+I    Y   G+ D A   F+ M + G    + ++ T++D LCK  +++ A + F ++
Sbjct: 298 TFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQM 357

Query: 199 FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
                  ++I++  + +G+ +  +  KA E+  EM+DRG+ P++T +  ++   F+ G++
Sbjct: 358 IDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPDVTIFTAMIDRLFKEGKV 417

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA-------------------RNV 299
            EA + F  M +   + +VV+Y T++HG+ + GE+                        +
Sbjct: 418 TEAQKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTL 477

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
            DGMV+ G+ P V T   +I   C+   +E+ + +F EM+GK    ++ T N+
Sbjct: 478 LDGMVSMGLKPDVDTCKTLIDSCCEDGRIEDILTLFREMLGKADKTDTITENI 530



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 102/221 (46%), Gaps = 6/221 (2%)

Query: 271 RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
           +K   D+ T+  ++      G +         ++  G+      +  +++ LC K    +
Sbjct: 7   KKVAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRADAVAFTPLLRTLCAKKRTSD 66

Query: 331 AI-LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD--ECEPNVQTYNI 387
           A+ +V   M   G  P+  +Y+ +++GLC   + E A E +  M +D   C P+V +Y+ 
Sbjct: 67  AMNIVLRRMPELGCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPDVVSYST 126

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           +I  F   G++ +   LF KM      PN+ T N +I  +   +  D    A  +L +M+
Sbjct: 127 VIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDK---AEAVLQQMI 183

Query: 448 DRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           D   MP   T+N +++G L  G    A  IL+  SR G+ P
Sbjct: 184 DEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRP 224



 Score = 42.4 bits (98), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 62/156 (39%), Gaps = 17/156 (10%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L + M    + P    F  + +R    GK   A K+F  M   G + ++ S+NT++    
Sbjct: 388 LFYEMMDRGIPPDVTIFTAMIDRLFKEGKVTEAQKLFDLMPRAGAKPNVVSYNTMIHGYF 447

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
              +V +   L   +     K   +++N + +G                MV  GL P++ 
Sbjct: 448 IAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDG----------------MVSMGLKPDVD 491

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
           T   ++      G+IE+    F EM  +  + D +T
Sbjct: 492 TCKTLIDSCCEDGRIEDILTLFREMLGKADKTDTIT 527


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 104/386 (26%), Positives = 193/386 (50%), Gaps = 8/386 (2%)

Query: 103 PSSFDHAI--DLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P  F ++I  D  +R  D + + +L  +     +     T +I+       GK   A ++
Sbjct: 118 PDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEV 177

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCL 219
             S+   G   +   +NT+++  C+  ++E A++ F   + +  K D I+YN + NG C 
Sbjct: 178 LQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCK 237

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
            +R   A ++L EM D G+NP + T+N ++  Y R GQ+E+ +    EM++   + +VV+
Sbjct: 238 AERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVS 297

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y +IV+ F   G+I  A  + D M +  VLP+   YNA+I    +    + A ++ E+M 
Sbjct: 298 YGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMK 357

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             G  P+  TYN++I+GLC+  ++  A E +  + +    P+  +YN LI   C  G I+
Sbjct: 358 SNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNID 417

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
           + L+L ++M        + TY+ LIS +    + +++     L  +M+    +P     N
Sbjct: 418 KALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEY---LYQKMMQNNVVPSNAIHN 474

Query: 460 RVLNGLLLIGNQGLAKEILR--LQSR 483
            ++      GN+  A+++ +  LQ R
Sbjct: 475 IMVEAYSKYGNEIKAEDLRKEMLQKR 500



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 163/380 (42%), Gaps = 41/380 (10%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   ++ ++      AG+   AV++F  M E     +  ++NT++D   K   +E  + L
Sbjct: 13  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 72

Query: 196 FK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
               V  G  K + I+YNV+ +G C   R  +   +L EM  + + P+  TY+I+  G  
Sbjct: 73  RDQMVCHG-LKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLS 131

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
           R G  +     F +  K    I   T + +++G    G++  A  V   +VN G++P+  
Sbjct: 132 RNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRV 191

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC--------------- 358
            YN +I   C+   +E A   F +M  +   P+  TYN +I GLC               
Sbjct: 192 IYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEM 251

Query: 359 --------------------HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
                                TG++E+    +  M+++  +PNV +Y  ++  FC  G+I
Sbjct: 252 QDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKI 311

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
              + + + M     LPN   YN +I +      +D   +   L+ +M   G  P   T+
Sbjct: 312 PEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFI---LVEKMKSNGISPSIVTY 368

Query: 459 NRVLNGLLLIGNQGLAKEIL 478
           N ++ GL        A+EI+
Sbjct: 369 NLLIKGLCNQSQISEAEEII 388



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 3/184 (1%)

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
           +G   P+  +YN +I  + +     +A+ VF+EM  +  +PN  TYN +I G    G++E
Sbjct: 8   DGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLE 67

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
                  +M     +PN  TYN+L+   C AG +     L ++M S   +P+  TY+IL 
Sbjct: 68  AGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILF 127

Query: 425 SSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484
             +     S  +L    L  + +  G     +T + +LNGL   G   +A+E+L+     
Sbjct: 128 DGLSRNGDSKAML---SLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNA 184

Query: 485 GRLP 488
           G +P
Sbjct: 185 GLVP 188



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
           +D    PN  +YN++I     AG     +E+F++M     LPN  TYN +I       K 
Sbjct: 7   RDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHI---KG 63

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
            DL    +L  +MV  G  P   T+N +L+GL   G  G    +L   +    +P  F
Sbjct: 64  GDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGF 121


>gi|302765176|ref|XP_002966009.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
 gi|300166823|gb|EFJ33429.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
          Length = 413

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 155/322 (48%), Gaps = 5/322 (1%)

Query: 169 CRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR--GKFKADVISYNVIANGWCLVKRTNKA 226
           C   + ++NT++   CK    ++A ++F+  +  G  K + +S++ +    C + R   A
Sbjct: 7   CAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDA 66

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
           L V +EM+  GL  ++   N ++    R G + +A R    M      +DV TY+ ++  
Sbjct: 67  LAVFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYLMDA 126

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
            G  G   +A  VF  M   G +P    YN +I  L K+  V+ A+ + E+M  KG MP+
Sbjct: 127 LGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPD 186

Query: 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
             TYN+VI  L   G  E+A  F G MK  +  P+V TYN L+         +   +LF+
Sbjct: 187 CRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFD 246

Query: 407 KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
           +M +  C+P+L T+  LI ++    + +D L     L++M   G +P  + +N +++G  
Sbjct: 247 EMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKM---GHVPNSYIYNALISGFC 303

Query: 467 LIGNQGLAKEILRLQSRCGRLP 488
             G      E+ +    C   P
Sbjct: 304 RSGQVDKGYELFQDMIECSCFP 325



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 102/354 (28%), Positives = 171/354 (48%), Gaps = 37/354 (10%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           I    RL   R    L+H M + +      T++ + +    AG+A +A+++F +M + GC
Sbjct: 89  IHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYLMDALGKAGRAAKALEVFSNMQKAGC 148

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEV 229
                 +N ++  L K+ KV++                                  ALE+
Sbjct: 149 MPDTVVYNVLISCLGKQGKVDE----------------------------------ALEL 174

Query: 230 LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289
           L++M  +G+ P+  TYNIV+      G+ E+A+ FF  MK+RK   DVVTY T+++G   
Sbjct: 175 LEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKK 234

Query: 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
           +     A ++FD M     +P + T+  +I  L K   +E+A+     +V  G++PNS  
Sbjct: 235 LRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYI 294

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
           YN +I G C +G++++  E    M +  C P+  TY IL+  F   G     +EL ++M 
Sbjct: 295 YNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMV 354

Query: 410 SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
                P L TYN+LI S+ +  + +D   A  L  EM+ +GF P   T++ + N
Sbjct: 355 REGHTPALATYNVLIRSLSMAGQVED---AYTLFKEMIAKGFNPDMQTYSALPN 405



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 162/378 (42%), Gaps = 40/378 (10%)

Query: 130 KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG-CRQSLNSFNTILDLLCKEKK 188
           ++    P    +  +   Y  AG  DRA+ +F  + + G C+ +  SF+T++  LCK  +
Sbjct: 3   ETCDCAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSR 62

Query: 189 VEKAYNLFKVFRGK------------------------------------FKADVISYNV 212
              A  +F+   G                                     F  DV +Y+ 
Sbjct: 63  ATDALAVFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSY 122

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           + +      R  KALEV   M   G  P+   YN+++    + G+++EA     +M ++ 
Sbjct: 123 LMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKG 182

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
              D  TY  ++      G  ++A + F  M      P V TYN ++  L K    + A 
Sbjct: 183 IMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEAC 242

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
            +F+EM     MP+ TT+  +I  L   G ME ALE   R+      PN   YN LI  F
Sbjct: 243 DLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGF 302

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
           C +G++++G ELF+ M    C P+  TY IL+     R  +    +A +LL EMV  G  
Sbjct: 303 CRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTS---MAMELLQEMVREGHT 359

Query: 453 PRKFTFNRVLNGLLLIGN 470
           P   T+N ++  L + G 
Sbjct: 360 PALATYNVLIRSLSMAGQ 377



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 98/218 (44%), Gaps = 7/218 (3%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID+ +    Y   ++    MK     P   T+  +        + D A  +F  M
Sbjct: 189 TYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEM 248

Query: 165 HEHGCRQSLNSFNTILDLLCK----EKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV 220
             + C   L +F T++D L K    E  +E++  L K+  G      I YN + +G+C  
Sbjct: 249 QANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKM--GHVPNSYI-YNALISGFCRS 305

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
            + +K  E+ ++M++    P+  TY I++ G+ R G    A     EM +      + TY
Sbjct: 306 GQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATY 365

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
             ++    + G+++ A  +F  M+  G  P + TY+A+
Sbjct: 366 NVLIRSLSMAGQVEDAYTLFKEMIAKGFNPDMQTYSAL 403



 Score = 46.2 bits (108), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 59/145 (40%), Gaps = 33/145 (22%)

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS-GVCLPNLDTYNILISSMFVRKKSDD 435
           +C P+V  YN LI  +C AG+ +R L++F ++   G C PN  +++ L+  +    ++ D
Sbjct: 6   DCAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATD 65

Query: 436 LLV--------------------------------AGKLLIEMVDRGFMPRKFTFNRVLN 463
            L                                 A +LL  M    F+   FT++ +++
Sbjct: 66  ALAVFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYLMD 125

Query: 464 GLLLIGNQGLAKEILRLQSRCGRLP 488
            L   G    A E+     + G +P
Sbjct: 126 ALGKAGRAAKALEVFSNMQKAGCMP 150


>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
 gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
          Length = 614

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 155/331 (46%), Gaps = 7/331 (2%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  +    +  D  +   L   M    + P   T+    +    AG+   AV++F  M
Sbjct: 281 TFNTLMSGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEM 340

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKR 222
            E G   +   F T++D  CKE  V     L +    RG  K D+++YN +ANG C V+ 
Sbjct: 341 RERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRG-IKTDLVAYNALANGLCRVRD 399

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
              A ++++EM + GL P+  TY  ++ G+ + G+++ A     EM      +D VTYTT
Sbjct: 400 LKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTT 459

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++ G    G    +  +   M+  G+ P   TY  +I   CK   V+    + +EM  KG
Sbjct: 460 LISGLSKSGRSVDSERILCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKG 519

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
             P   TYNVV+ G C  G+M+ A   +  M +    P+  TYNIL+   C  G++    
Sbjct: 520 RKPGVVTYNVVMNGFCILGQMKNADMLLNAMLNIGVCPDDITYNILLDGHCKHGKVRDAE 579

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
           EL    G    + +   Y  LI+  FV+KKS
Sbjct: 580 ELKSAKG---MVSDFGLYTSLINE-FVKKKS 606



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 167/355 (47%), Gaps = 4/355 (1%)

Query: 111 DLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCR 170
           DL  RL      +    ++    + P  K F ++    + +GK   A  +F  M   G  
Sbjct: 217 DLMNRLPSVPEAYAFYLQLLDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVP 276

Query: 171 QSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEV 229
            ++ +FNT++  +CK   +  A  L  +  +     DV +Y     G C   R   A+E+
Sbjct: 277 PTVVTFNTLMSGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEM 336

Query: 230 LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289
            +EM +RG+NPN   +  ++  + + G +        EM  R  + D+V Y  + +G   
Sbjct: 337 FEEMRERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCR 396

Query: 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
           V ++K A ++ + M N G+ P   TY  +I   CK+  ++ A+ + +EM  +G   +  T
Sbjct: 397 VRDLKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVT 456

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
           Y  +I GL  +G    +   +  M +   EP+  TY ++I  FC   +++ G +L ++M 
Sbjct: 457 YTTLISGLSKSGRSVDSERILCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQ 516

Query: 410 SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           +    P + TYN++++   +  +  +   A  LL  M++ G  P   T+N +L+G
Sbjct: 517 NKGRKPGVVTYNVVMNGFCILGQMKN---ADMLLNAMLNIGVCPDDITYNILLDG 568



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 156/335 (46%), Gaps = 6/335 (1%)

Query: 156 RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIA 214
            A   +L + + G       FN ++  + +  K+  A N+F ++ R      V+++N + 
Sbjct: 227 EAYAFYLQLLDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLM 286

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
           +G C     N A  +   M   G+ P++ TY   ++G  +AG+I++A   F EM++R   
Sbjct: 287 SGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVN 346

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
            + V +TT++      G +     +   M   G+   +  YNA+   LC+   ++ A  +
Sbjct: 347 PNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDI 406

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
            EEM   G  P+  TY  +I G C  GE++ A+E    M D+    +  TY  LI     
Sbjct: 407 VEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSK 466

Query: 395 AG-EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
           +G  ++    L E M +G+  P+  TY ++I +     K+ D+    KLL EM ++G  P
Sbjct: 467 SGRSVDSERILCEMMEAGL-EPDNTTYTMVIDAFC---KNSDVKTGFKLLKEMQNKGRKP 522

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
              T+N V+NG  ++G    A  +L      G  P
Sbjct: 523 GVVTYNVVMNGFCILGQMKNADMLLNAMLNIGVCP 557



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 63/153 (41%), Gaps = 3/153 (1%)

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
           SV  A   + +++  G  P +  +N+++R +  +G++  A      M      P V T+N
Sbjct: 224 SVPEAYAFYLQLLDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFN 283

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            L+   C A ++     L   M      P++ TY   +  +    +  D   A ++  EM
Sbjct: 284 TLMSGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQD---AVEMFEEM 340

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
            +RG  P    F  +++     GN     E+ R
Sbjct: 341 RERGVNPNTVVFTTLIDAHCKEGNVAAGLELHR 373


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 173/358 (48%), Gaps = 5/358 (1%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           ++  L L P   TF  +        +   A+  F  M E  CR ++ +F T+++ LC+E 
Sbjct: 139 KITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREG 198

Query: 188 KVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG-LNPNLTTY 245
           ++ +A  L  ++     +   I+Y  I +G C    T  AL +L++M +   + PN+  Y
Sbjct: 199 RIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIY 258

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           + ++    + G+  +A   F EM+++    D+ TY +++ GF   G    A  +   M+ 
Sbjct: 259 SAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLE 318

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
             + P V TYNA+I    K+     A  +++EM+ +G +PN+ TY+ +I G C    ++ 
Sbjct: 319 RKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDA 378

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           A      M    C PN+ T+N LI  +C A  I+ G+EL  +M     + +  TYN LI 
Sbjct: 379 AEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIH 438

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
             ++     DL  A  LL EM+  G  P   T + +L+GL   G    A E+ ++  +
Sbjct: 439 GFYL---VGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQK 493



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 105/387 (27%), Positives = 177/387 (45%), Gaps = 51/387 (13%)

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186
           H+M   +  P   TF  +       G+   AV +   M E G + +  ++ TI+D +CK+
Sbjct: 173 HQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKK 232

Query: 187 KKVEKAYNLFKVFR--GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
                A NL +          +V+ Y+ I +  C   R + A  +  EM ++G+ P+L T
Sbjct: 233 GDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFT 292

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           YN ++ G+  +G+  +A +   EM +RK   DVVTY  +++ F   G+   A  ++D M+
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEML 352

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
             G++P+  TY++MI   CK++ ++ A  +F  M  KG  PN  T+N +I G C    ++
Sbjct: 353 PRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRID 412

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGVC---------- 413
             +E +  M +     +  TYN LI  F   G++   L+L ++M  SG+C          
Sbjct: 413 DGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLL 472

Query: 414 -----------------------------------LPNLDTYNILISSMFVRKKSDDLLV 438
                                               P++ TYNILIS +    K    L 
Sbjct: 473 DGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGK---FLE 529

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           A +L  EM  RG +P   T++ +++GL
Sbjct: 530 AEELYEEMPHRGIVPDTITYSSMIDGL 556



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 111/416 (26%), Positives = 190/416 (45%), Gaps = 16/416 (3%)

Query: 82  HALKALH-----FFNILSYHPTYAHSPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSL 134
           H +K L      F ++L   P     PS  D    + +  R+     V +L  +M+   +
Sbjct: 55  HEIKGLEDAIDLFSDMLRSRPL----PSVVDFCKLMGVVVRMERPDLVISLYQKMERKQI 110

Query: 135 GPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN 194
                +F I+ + + S  K   A+  F  + + G    + +F T+L  LC E +V +A +
Sbjct: 111 RCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALD 170

Query: 195 LF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
            F ++F    + +V+++  + NG C   R  +A+ +L  M++ GL P   TY  ++ G  
Sbjct: 171 FFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMC 230

Query: 254 RAGQIEEAWRFFLEMKKRKCEI-DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
           + G    A     +M++    I +VV Y+ I+      G    A+N+F  M   G+ P +
Sbjct: 231 KKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDL 290

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            TYN+MI   C      +A  + +EM+ +   P+  TYN +I      G+   A E    
Sbjct: 291 FTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDE 350

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           M      PN  TY+ +I  FC    ++    +F  M +  C PNL T+N LI      K+
Sbjct: 351 MLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKR 410

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            DD +   +LL EM + G +    T+N +++G  L+G+   A ++L+     G  P
Sbjct: 411 IDDGM---ELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCP 463



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 154/309 (49%), Gaps = 12/309 (3%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T++ + + +    + D A  +F  M   GC  +L +FNT++D  C  K+++    L
Sbjct: 358 PNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMEL 417

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             ++      AD  +YN + +G+ LV   N AL++L+EM+  GL P++ T + +L G   
Sbjct: 418 LHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCD 477

Query: 255 AGQIEEAWRFFLEMKKRK-----------CEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            G++++A   F  M+K K            E DV TY  ++ G    G+   A  +++ M
Sbjct: 478 NGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEM 537

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            + G++P   TY++MI  LCK+  ++ A  +F+ M  K + PN  T+  +I G C  G +
Sbjct: 538 PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRV 597

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           +  LE    M       N  TY  LI  F   G I   L++F++M S    P+  T   +
Sbjct: 598 DDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNM 657

Query: 424 ISSMFVRKK 432
           ++ ++ +++
Sbjct: 658 LTGLWSKEE 666



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 181/396 (45%), Gaps = 17/396 (4%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           +   ID   +   +     L   M+   + P   T+  +   + S+G+   A ++   M 
Sbjct: 258 YSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEML 317

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKRT 223
           E      + ++N +++   KE K  +A  L+     RG    + I+Y+ + +G+C   R 
Sbjct: 318 ERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGII-PNTITYSSMIDGFCKQNRL 376

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A  +   M  +G +PNL T+N ++ GY  A +I++      EM +     D  TY T+
Sbjct: 377 DAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTL 436

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK-- 341
           +HGF +VG++  A ++   M++ G+ P + T + ++  LC    +++A+ +F+ M     
Sbjct: 437 IHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKK 496

Query: 342 ---------GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
                    G  P+  TYN++I GL + G+   A E    M      P+  TY+ +I   
Sbjct: 497 DLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGL 556

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
           C    ++   ++F+ MGS    PN+ T+  LI+      + DD L   +L  EM  RG +
Sbjct: 557 CKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGL---ELFCEMGRRGIV 613

Query: 453 PRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
               T+  ++ G   +GN   A +I +     G  P
Sbjct: 614 ANAITYITLICGFRKVGNINGALDIFQEMISSGVYP 649



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 152/326 (46%), Gaps = 19/326 (5%)

Query: 63  PSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDYR 120
           P+      ++D   K+  N    A H F +++   T   SP+  +F+  ID     +   
Sbjct: 358 PNTITYSSMIDGFCKQ--NRLDAAEHMFYLMA---TKGCSPNLITFNTLIDGYCGAKRID 412

Query: 121 TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180
               L+H M    L     T+  +   +   G  + A+ +   M   G    + + +T+L
Sbjct: 413 DGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLL 472

Query: 181 DLLCKEKKVEKAYNLFKVFRGKFK------------ADVISYNVIANGWCLVKRTNKALE 228
           D LC   K++ A  +FKV +   K             DV +YN++ +G     +  +A E
Sbjct: 473 DGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEE 532

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           + +EM  RG+ P+  TY+ ++ G  +  +++EA + F  M  +    +VVT+TT+++G+ 
Sbjct: 533 LYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYC 592

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G +     +F  M   G++ +  TY  +I    K  ++  A+ +F+EM+  G  P++ 
Sbjct: 593 KAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTI 652

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMK 374
           T   ++ GL    E++RA+  + +++
Sbjct: 653 TIRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 95/194 (48%), Gaps = 3/194 (1%)

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
           GF  +  ++ A ++F  M+    LPSV  +  ++ V+ + +  +  I ++++M  K    
Sbjct: 53  GFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRC 112

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           +  ++N++I+  C   ++  AL   G++      P+V T+  L+   C    +   L+ F
Sbjct: 113 DIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFF 172

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            +M    C PN+ T+  L++ +    +   ++ A  LL  M++ G  P + T+  +++G+
Sbjct: 173 HQMFETTCRPNVVTFTTLMNGLCREGR---IVEAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 466 LLIGNQGLAKEILR 479
              G+   A  +LR
Sbjct: 230 CKKGDTVSALNLLR 243


>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
           [Vitis vinifera]
          Length = 691

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 202/414 (48%), Gaps = 30/414 (7%)

Query: 78  RLWNHALKALHFF-NILSYHPTYAH--SPSSFDHAIDLAARLR------DYRTVWTLVH- 127
            +W   LK    + NI SY+           FD + ++  R++      D  T  TL+H 
Sbjct: 240 EIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHG 299

Query: 128 ---------------RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
                           M    + P    +  +   Y+ AG+ +  ++++  M + GCR +
Sbjct: 300 LCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCR-T 358

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLK 231
           + S+N ++  L +  KV++A +++++   K   AD ++Y V+ +G C     NKAL +L+
Sbjct: 359 VVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILE 418

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
           E  +   + +   Y+ ++ G  R G+++E      +M K  C+ +      +++GF    
Sbjct: 419 EAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRAS 478

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
           +++ A   F  MV+ G  P+V TYN +I  L K +    A  + +EM+ KG+ PN  TY+
Sbjct: 479 KLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYS 538

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
           +++ GLC   +++ AL    +  +   +P+V+ +NI+I   C +G++E  L+L+ +M   
Sbjct: 539 LLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQR 598

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            C+PNL T+N L+   +   K  D   A K+   ++  G  P   ++N  L GL
Sbjct: 599 KCVPNLVTHNTLMEGFY---KVRDFERASKIWDHILQYGPQPDIISYNITLKGL 649



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 177/355 (49%), Gaps = 8/355 (2%)

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
           A R+ +   +W ++ +        T  ++ I+        K D A+ I+  + E  C   
Sbjct: 338 AGRIEECLELWKVMEKEGC----RTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCAD 393

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLK 231
             ++  ++  LCK   + KA ++ +    G+   D  +Y+ + NG C   R ++   VL 
Sbjct: 394 SMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLD 453

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
           +M   G  PN    N V+ G+ RA ++E+A RFF  M  + C   VVTY T+++G     
Sbjct: 454 QMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAE 513

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
               A  +   M++ G  P++ TY+ ++  LC+   ++ A+ ++ + + KG+ P+   +N
Sbjct: 514 RFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHN 573

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
           ++I GLC +G++E AL+    MK  +C PN+ T+N L+  F    + ER  ++++ +   
Sbjct: 574 IIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQY 633

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
              P++ +YNI +  +    +  D   A   L + VDRG +P   T+N ++  +L
Sbjct: 634 GPQPDIISYNITLKGLCSCHRISD---AVGFLNDAVDRGVLPTAITWNILVRAVL 685



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 141/574 (24%), Positives = 226/574 (39%), Gaps = 165/574 (28%)

Query: 68  TPQLVDQIIKRLWN-HALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLV 126
           +P+ V +++K   N H+  AL  F+ ++  P Y+H+P  F H +    RL D + V    
Sbjct: 9   SPKRVIKLLKSEKNPHS--ALSIFDSVTRFPGYSHTPYVFHHIL---KRLFDPKLV---A 60

Query: 127 HRMKSLSLGPTQKTFA------IIAERYVSAGKADRAVKIFLSMHE-HGCRQSLNSFNTI 179
           H  + + L  TQK          + + Y      D+A+ IF  MHE  GC+  + S+N++
Sbjct: 61  HVSRIVELIRTQKCKCPEDVALTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSL 120

Query: 180 LDLL-----------------------------------CKEKKVEKAYNLFK-VFRGKF 203
           L+ L                                   C++K+ +KA  L   ++   F
Sbjct: 121 LNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGF 180

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI----- 258
             DV SY  + N        + AL++  EM +RG+ P++  YNI++ G+F+ G I     
Sbjct: 181 SPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASE 240

Query: 259 -------------------------------EEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
                                          +E++  +  MKK +   D+ TY+T++HG 
Sbjct: 241 IWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGL 300

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAM----------------------------- 318
              G +  A  V+  M   GV P V  YN M                             
Sbjct: 301 CGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVV 360

Query: 319 -----IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV--- 370
                I+ L +   V+ AI ++E +  K    +S TY V++ GLC  G + +AL  +   
Sbjct: 361 SYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEA 420

Query: 371 --GR------------------------------MKDDECEPNVQTYNILIRYFCDAGEI 398
             GR                              M    C+PN    N +I  F  A ++
Sbjct: 421 ENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKL 480

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           E  L  F  M S  C P + TYN LI+ +    K++    A  L+ EM+ +G+ P   T+
Sbjct: 481 EDALRFFGNMVSKGCFPTVVTYNTLINGL---SKAERFSEAYALVKEMLHKGWKPNMITY 537

Query: 459 NRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQFK 492
           + ++NGL     QG  K  + L   C  L + FK
Sbjct: 538 SLLMNGLC----QG-KKLDMALNLWCQALEKGFK 566



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 138/240 (57%), Gaps = 1/240 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++ +M      P       +   +V A K + A++ F +M   GC  ++ ++NT+++ L 
Sbjct: 451 VLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLS 510

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K ++  +AY L K +    +K ++I+Y+++ NG C  K+ + AL +  + +++G  P++ 
Sbjct: 511 KAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVK 570

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            +NI++ G   +G++E+A + + EMK+RKC  ++VT+ T++ GF  V + +RA  ++D +
Sbjct: 571 MHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHI 630

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           +  G  P + +YN  ++ LC    + +A+    + V +G +P + T+N+++R +   G +
Sbjct: 631 LQYGPQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILVRAVLDNGAL 690



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 129/249 (51%), Gaps = 3/249 (1%)

Query: 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVIS 209
           G+ D    +   M +HGC+ + +  N +++   +  K+E A   F   V +G F   V++
Sbjct: 443 GRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPT-VVT 501

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           YN + NG    +R ++A  ++KEM+ +G  PN+ TY++++ G  +  +++ A   + +  
Sbjct: 502 YNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQAL 561

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
           ++  + DV  +  I+HG    G+++ A  ++  M     +P++ T+N +++   K    E
Sbjct: 562 EKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFE 621

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
            A  +++ ++  G  P+  +YN+ ++GLC    +  A+ F+    D    P   T+NIL+
Sbjct: 622 RASKIWDHILQYGPQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILV 681

Query: 390 RYFCDAGEI 398
           R   D G +
Sbjct: 682 RAVLDNGAL 690


>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
 gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
          Length = 789

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 110/425 (25%), Positives = 203/425 (47%), Gaps = 7/425 (1%)

Query: 68  TPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVH 127
           +P++V  II+   N  L    FF I + +     +  S D   DL             + 
Sbjct: 58  SPKIVTSIIQNPPNPQL-GFRFF-IWASNFKRFRAWESCDLITDLLINQNGLELYCQTLE 115

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
            +K+  +      F ++ + Y+  G  D+A++ F SM +  C   + ++N ILD+L ++ 
Sbjct: 116 ALKNGGIKVHNDAFFVLIKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVLIQKN 175

Query: 188 KVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
            +  A  ++ ++ +     +V +++++ +G C       AL +  EM  RG+ P+  TY 
Sbjct: 176 FLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYC 235

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
           +V+ G  R+ ++++A+R F +MK      D VT   +++GF ++  +  A ++       
Sbjct: 236 VVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKD 295

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G +  V  Y+ +I+ L +    E+  L++ +M+     P+   Y ++++GL   G++  A
Sbjct: 296 GYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDA 355

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
           LE +  M +    P+   YN+LI+ FCD G +     L  ++    C PN+ TY+ILIS 
Sbjct: 356 LELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILISG 415

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGR 486
           M     + D   A ++  EM   G  P   TFN +++GL   G    A  +L  +   GR
Sbjct: 416 MCRNGLTRD---AQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKA-HLLFYKMEIGR 471

Query: 487 LPRQF 491
            P  F
Sbjct: 472 NPSLF 476



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 180/368 (48%), Gaps = 13/368 (3%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           T+  RM  L+  P   TF+I+ +    +G    A+ +F  M + G      ++  ++  L
Sbjct: 182 TVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGL 241

Query: 184 CKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           C+ K+V+ AY LF K+       D ++ N + NG+C++ R ++A  +L+     G   ++
Sbjct: 242 CRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDV 301

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
             Y+ +++G FRA + E+    + +M +   + DV  YT ++ G    G+++ A  + + 
Sbjct: 302 RGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNE 361

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M   GV+P    YN +I+  C    +  A  +  E+      PN  TY+++I G+C  G 
Sbjct: 362 MTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILISGMCRNGL 421

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL----- 417
              A E    M+   C P+  T+N LI   C  G++E+   LF KM  G   P+L     
Sbjct: 422 TRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKMEIGRN-PSLFLRLS 480

Query: 418 DTYNILISSMFVRKKSDDLLVAG------KLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
              + ++ S  ++K  + L  +G      ++L+++ D G  P  +T+N ++NG   +GN 
Sbjct: 481 QGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNF 540

Query: 472 GLAKEILR 479
             A ++ R
Sbjct: 541 NGAYKLFR 548



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 156/351 (44%), Gaps = 30/351 (8%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P  KT++I+       G    A +IF  M + GC  S  +FN+++D LCK  ++EKA+ L
Sbjct: 404 PNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLL 463

Query: 196 F-KVFRGKFKA-------------DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           F K+  G+  +             D  S   +    C     +KA  +L ++ D G  P 
Sbjct: 464 FYKMEIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPG 523

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           + TYNI++ G+ + G    A++ F EM+ +    D VTY T+++G       + A  VFD
Sbjct: 524 IYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFD 583

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M   G  P  A Y  M+  +C++  +  A  ++ + + +            I G     
Sbjct: 584 QMEKNGCTPDAAVYRTMMTWMCRRMELPRAFSLWLKYL-RNIRSQEDEAIKAIEGYFEKQ 642

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
           E+E+A+  +  M     + ++  Y I +   C    +   L++F           L+ Y 
Sbjct: 643 EVEKAVRGLLEMDFKLNDFDLGPYAIWLIGLCQTRRVGEALKIFLI---------LEEYK 693

Query: 422 ILISS------MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
           ++I+       ++   K  DL  A  + +  +++G++ R+   NR+L  L+
Sbjct: 694 VVITPPCCVKLIYFLLKEGDLDRAIDVFLYTIEKGYLLRRRVANRILTKLV 744



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/264 (20%), Positives = 106/264 (40%), Gaps = 38/264 (14%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            +L ++   + L   M+   L P   T+  +    +   + + A K+F  M ++GC    
Sbjct: 535 CKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQMEKNGCTPDA 594

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
             + T++  +C+  ++ +A++L                     W       K L  ++  
Sbjct: 595 AVYRTMMTWMCRRMELPRAFSL---------------------WL------KYLRNIRSQ 627

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
            D  +          ++GYF   ++E+A R  LEM  +  + D+  Y   + G      +
Sbjct: 628 EDEAIK--------AIEGYFEKQEVEKAVRGLLEMDFKLNDFDLGPYAIWLIGLCQTRRV 679

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
             A  +F  +    V+ +      +I  L K+  ++ AI VF   + KGY+      N +
Sbjct: 680 GEALKIFLILEEYKVVITPPCCVKLIYFLLKEGDLDRAIDVFLYTIEKGYLLRRRVANRI 739

Query: 354 IRGLC-HTGEM--ERALEFVGRMK 374
           +  L    GEM  +RA+  + RMK
Sbjct: 740 LTKLVRRKGEMGKDRAIYLLCRMK 763


>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62914, mitochondrial; Flags: Precursor
 gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats. EST gb|AA728420 comes from this gene
           [Arabidopsis thaliana]
 gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 528

 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 158/305 (51%), Gaps = 1/305 (0%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            L+ RM      P   T+  +       G  D A+ +   M       ++  ++T++D L
Sbjct: 204 ALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSL 263

Query: 184 CKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CK +  + A NLF     K  + +VI+Y+ + +  C   R + A  +L +M++R +NPNL
Sbjct: 264 CKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNL 323

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            T++ ++  + + G++ +A + + EM KR  + ++ TY+++++GF ++  +  A+ + + 
Sbjct: 324 VTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLEL 383

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M+    LP+V TYN +I   CK   V+  + +F EM  +G + N+ TY  +I G     +
Sbjct: 384 MIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARD 443

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
            + A     +M      PN+ TYNIL+   C  G++ + + +FE +      P++ TYNI
Sbjct: 444 CDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNI 503

Query: 423 LISSM 427
           +I  M
Sbjct: 504 MIEGM 508



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 109/429 (25%), Positives = 191/429 (44%), Gaps = 42/429 (9%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           A+  F +++    +  S   F   +   A++  +  V +   +M+ L +     T+ I+ 
Sbjct: 62  AIGLFGVMAQSRPFP-SIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILI 120

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFK 204
             +    +   A+ +   M + G    + + N++L+  C   ++  A  L  ++    +K
Sbjct: 121 NCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYK 180

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
            D +++  + +G  L  + ++A+ ++  MV RG  P+L TY  V+ G  + G  + A   
Sbjct: 181 PDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNL 240

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC- 323
             +M+  K E +VV Y+T++           A N+F  M N GV P+V TY+++I  LC 
Sbjct: 241 LNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCN 300

Query: 324 ----------------------------------KKDSVENAILVFEEMVGKGYMPNSTT 349
                                             KK  +  A  ++EEM+ +   PN  T
Sbjct: 301 YGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFT 360

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
           Y+ +I G C    +  A + +  M   +C PNV TYN LI  FC A  +++G+ELF +M 
Sbjct: 361 YSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMS 420

Query: 410 SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
               + N  TY  LI   F  +  D+   A  +  +MV  G  P   T+N +L+G  L  
Sbjct: 421 QRGLVGNTVTYTTLIHGFFQARDCDN---AQMVFKQMVSVGVHPNILTYNILLDG--LCK 475

Query: 470 NQGLAKEIL 478
           N  LAK ++
Sbjct: 476 NGKLAKAMV 484



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 169/351 (48%), Gaps = 4/351 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK-EKKVEKAYN 194
           P+   F+ +        K D  +     M   G   +L ++N +++  C+  +       
Sbjct: 76  PSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSRLSLALAL 135

Query: 195 LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           L K+ +  ++ D+++ N + NG+C   R + A+ ++ +MV+ G  P+  T+  ++ G F 
Sbjct: 136 LGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFL 195

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
             +  EA      M +R C+ D+VTY  +V+G    G+   A N+ + M    +  +V  
Sbjct: 196 HNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVI 255

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y+ +I  LCK    ++A+ +F EM  KG  PN  TY+ +I  LC+ G    A   +  M 
Sbjct: 256 YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMI 315

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
           + +  PN+ T++ LI  F   G++ +  +L+E+M      PN+ TY+ LI+   +    D
Sbjct: 316 ERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCML---D 372

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
            L  A ++L  M+ +  +P   T+N ++NG           E+ R  S+ G
Sbjct: 373 RLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRG 423



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 138/258 (53%), Gaps = 1/258 (0%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           +   ID   + R       L   M++  + P   T++ +     + G+   A ++   M 
Sbjct: 256 YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMI 315

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTN 224
           E     +L +F+ ++D   K+ K+ KA  L++ + +     ++ +Y+ + NG+C++ R  
Sbjct: 316 ERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLG 375

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           +A ++L+ M+ +   PN+ TYN ++ G+ +A ++++    F EM +R    + VTYTT++
Sbjct: 376 EAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLI 435

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
           HGF    +   A+ VF  MV+ GV P++ TYN ++  LCK   +  A++VFE +      
Sbjct: 436 HGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTME 495

Query: 345 PNSTTYNVVIRGLCHTGE 362
           P+  TYN++I G+C  G+
Sbjct: 496 PDIYTYNIMIEGMCKAGK 513



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 138/306 (45%), Gaps = 38/306 (12%)

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
           N + LV    + +E+L      G++ NL TYNI++  + R  ++  A     +M K   E
Sbjct: 92  NKFDLVISFGEKMEIL------GISHNLYTYNILINCFCRCSRLSLALALLGKMMKLGYE 145

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
            D+VT  ++++GF     I  A  + D MV  G  P   T+  +I  L   +    A+ +
Sbjct: 146 PDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVAL 205

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
            + MV +G  P+  TY  V+ GLC  G+ + AL  + +M+  + E NV  Y+ +I   C 
Sbjct: 206 IDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCK 265

Query: 395 AGEIERGLELFEKMGSGVCLPNLDTYNILI----------------SSMFVRK------- 431
               +  L LF +M +    PN+ TY+ LI                S M  RK       
Sbjct: 266 YRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVT 325

Query: 432 ---------KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
                    K   L+ A KL  EM+ R   P  FT++ ++NG  ++   G AK++L L  
Sbjct: 326 FSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMI 385

Query: 483 RCGRLP 488
           R   LP
Sbjct: 386 RKDCLP 391



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 53/269 (19%), Positives = 107/269 (39%), Gaps = 38/269 (14%)

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           Y  VL+      ++++A   F  M + +    ++ ++ ++     + +     +  + M 
Sbjct: 46  YREVLRTGLSDIELDDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKME 105

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM- 363
             G+  ++ TYN +I   C+   +  A+ +  +M+  GY P+  T N ++ G CH   + 
Sbjct: 106 ILGISHNLYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRIS 165

Query: 364 ----------------------------------ERALEFVGRMKDDECEPNVQTYNILI 389
                                               A+  + RM    C+P++ TY  ++
Sbjct: 166 DAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVV 225

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
              C  G+ +  L L  KM +     N+  Y+ +I S+   +  DD L    L  EM ++
Sbjct: 226 NGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDAL---NLFTEMENK 282

Query: 450 GFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           G  P   T++ +++ L   G    A  +L
Sbjct: 283 GVRPNVITYSSLISCLCNYGRWSDASRLL 311



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/213 (20%), Positives = 98/213 (46%), Gaps = 20/213 (9%)

Query: 63  PSLHWTPQLVDQIIKR--------LWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAA 114
           P+L     L+D  +K+        L+   +K     NI +Y        SS  +   +  
Sbjct: 321 PNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTY--------SSLINGFCMLD 372

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           RL + + +  L+ R   L   P   T+  +   +  A + D+ +++F  M + G   +  
Sbjct: 373 RLGEAKQMLELMIRKDCL---PNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTV 429

Query: 175 SFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           ++ T++    + +  + A  +FK +       ++++YN++ +G C   +  KA+ V + +
Sbjct: 430 TYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYL 489

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
               + P++ TYNI+++G  +AG+ +    +F+
Sbjct: 490 QRSTMEPDIYTYNIMIEGMCKAGKWKMGGIYFV 522


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 152/292 (52%), Gaps = 7/292 (2%)

Query: 172 SLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNKALE-V 229
           +L ++  ++   C   +++  +  L  V +  F  D I++  +  G C  KRT+ A++ V
Sbjct: 90  NLCTYGILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDAMDIV 149

Query: 230 LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR--KCEIDVVTYTTIVHGF 287
           L+ M   G  PN+ +YNI+LKG     + +EA      M      C  DVV+YTT+++GF
Sbjct: 150 LRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGF 209

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
              G++ +A   +  M++ G+LP+V TY+++I  LCK  +++ A+ V   MV  G MPN 
Sbjct: 210 FKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNC 269

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
            TYN ++ G C +G+ + A+ F+ +M  D  EP+V TYN L+ Y C  G      ++F+ 
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDS 329

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
           M      P + TY  L+     +     L+    LL  MV  G  P  + F+
Sbjct: 330 MTKRGLKPEITTYGTLLQGYATKGA---LVEMHGLLDLMVRNGIHPNHYVFS 378



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 181/365 (49%), Gaps = 18/365 (4%)

Query: 116 LRDYRTVWTLVHRMKSLSL------GPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           L+ Y T   LV     L L       P    F+I+   Y   GK D+A+ +F  M + G 
Sbjct: 346 LQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGL 405

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
                ++ T++ +LCK  +VE A   F ++   +     I YN + +  C+  + +KA E
Sbjct: 406 NPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKE 465

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           ++ EM+DRG+  +   +N ++  + + G++ E+ + F  M +   + D++TY+T++ G+ 
Sbjct: 466 LILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYC 525

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
           + G++  A  +   MV+ G+ P   TYN +I   CK   +E+A+++F EM   G  P+  
Sbjct: 526 LAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDII 585

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           TYN++++GL  T     A E    + +   +  + TYNI++   C     +  L +F+ +
Sbjct: 586 TYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNL 645

Query: 409 GSGVCLPNLD----TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
               CL +L     T+NI+I ++    ++D+   A  L   +   G +P   T++ +   
Sbjct: 646 ----CLTDLQLETRTFNIMIGALLKVGRNDE---AKDLFAALSANGLVPDVRTYSLMAEN 698

Query: 465 LLLIG 469
           L+  G
Sbjct: 699 LIEQG 703



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 181/380 (47%), Gaps = 6/380 (1%)

Query: 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG--C 169
           L A  R    +  ++ RM  L   P   ++ I+ +      ++  A+++   M + G  C
Sbjct: 136 LCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDC 195

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
              + S+ T+++   KE  ++KAY  + ++       +V++Y+ I    C  +  +KA+E
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAME 255

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           VL  MV  G+ PN  TYN ++ GY  +GQ +EA  F  +M     E DVVTY +++    
Sbjct: 256 VLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLC 315

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G    AR +FD M   G+ P + TY  ++Q    K ++     + + MV  G  PN  
Sbjct: 316 KNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHY 375

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            ++++I      G++++A+    +M+     P+  TY  +I   C +G +E  +  FE+M
Sbjct: 376 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM 435

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
                 P    YN LI S+ +  K D    A +L++EM+DRG       FN +++     
Sbjct: 436 IDERLSPGNIVYNSLIHSLCIFDKWDK---AKELILEMLDRGICLDTIFFNSIIDSHCKE 492

Query: 469 GNQGLAKEILRLQSRCGRLP 488
           G    ++++  L  R G  P
Sbjct: 493 GRVIESEKLFDLMVRIGVKP 512



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 97/424 (22%), Positives = 183/424 (43%), Gaps = 74/424 (17%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P  +T+  I   Y S+G+   A+     MH  G    + ++N+++D LCK  +  +A  +
Sbjct: 267 PNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKM 326

Query: 196 FKVFRGK-FKADVISYNVIANGWC----LVK----------------------------- 221
           F     +  K ++ +Y  +  G+     LV+                             
Sbjct: 327 FDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAK 386

Query: 222 --RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
             + ++A+ V  +M  +GLNP+  TY  V+    ++G++E+A R+F +M   +     + 
Sbjct: 387 QGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIV 446

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y +++H   +  +  +A+ +   M++ G+      +N++I   CK+  V  +  +F+ MV
Sbjct: 447 YNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMV 506

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             G  P+  TY+ +I G C  G+M+ A + +  M     +P+  TYN LI  +C    +E
Sbjct: 507 RIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRME 566

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP------ 453
             L LF +M S    P++ TYNI++  +F  +++     A +L + + + G         
Sbjct: 567 DALVLFREMESSGVSPDIITYNIILQGLFQTRRT---AAAKELYVGITESGTQLELSTYN 623

Query: 454 ----------------RKF-------------TFNRVLNGLLLIGNQGLAKEILRLQSRC 484
                           R F             TFN ++  LL +G    AK++    S  
Sbjct: 624 IILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSAN 683

Query: 485 GRLP 488
           G +P
Sbjct: 684 GLVP 687



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 150/300 (50%), Gaps = 4/300 (1%)

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYN 211
           K D+A ++ L M + G       FN+I+D  CKE +V ++  LF +  R   K D+I+Y+
Sbjct: 459 KWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYS 518

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
            + +G+CL  + ++A ++L  MV  G+ P+  TYN ++ GY +  ++E+A   F EM+  
Sbjct: 519 TLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESS 578

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
               D++TY  I+ G         A+ ++ G+   G    ++TYN ++  LCK +  + A
Sbjct: 579 GVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEA 638

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
           + +F+ +        + T+N++I  L   G  + A +    +  +   P+V+TY+++   
Sbjct: 639 LRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAEN 698

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
             + G +E   +LF  M    C  N    N ++  +  R    D+  AG  L  + ++ F
Sbjct: 699 LIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRG---DITRAGTYLFMIDEKHF 755



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 111/244 (45%), Gaps = 8/244 (3%)

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI--DVVTYTTI 283
           A  V  E++ RG   ++   N  L    R        R+    +    E+  ++ TY  +
Sbjct: 38  ARHVFDELLRRGRGASIYGLNCALADVARHSPAAAVSRYNRMARAGADEVTPNLCTYGIL 97

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI-LVFEEMVGKG 342
           +      G +         ++  G +     +  M++ LC      +A+ +V   M   G
Sbjct: 98  MGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDAMDIVLRRMTQLG 157

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD--ECEPNVQTYNILIRYFCDAGEIER 400
            +PN  +YN++++GLC     + ALE +  M DD  +C P+V +Y  +I  F   G++++
Sbjct: 158 CIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDK 217

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
               + +M     LPN+ TY+ +I+++   +  D    A ++L  MV  G MP   T+N 
Sbjct: 218 AYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDK---AMEVLTSMVKNGVMPNCRTYNS 274

Query: 461 VLNG 464
           +++G
Sbjct: 275 IVHG 278


>gi|356546852|ref|XP_003541836.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Glycine max]
          Length = 481

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/395 (28%), Positives = 195/395 (49%), Gaps = 18/395 (4%)

Query: 71  LVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSS--FDHAIDLAARLRDYRTVWTLVHR 128
           LV  +++R  +    A  FFN  S   T  + PSS   +  +D+  +++ ++ +  ++  
Sbjct: 69  LVLDVLRRHRSDWRPAHVFFNWAS-KTTTGYQPSSDVCNEIVDILGKMQRFQELHQVLDE 127

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M        +  FA +  R+V A K D A+++F    E G   +  +F T+L  LC+ K 
Sbjct: 128 MSKREELLDEAVFATLVRRFVGAHKVDEAIQLFYRRKEFGLELNSEAFRTLLMWLCRYKH 187

Query: 189 VEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           VE A  LF    +   +AD+  +NVI NGWC++  +++A  V +++V     P++ TY  
Sbjct: 188 VEDAEALFHNSVKKGLRADIKMWNVILNGWCVLGNSHEAKRVWRDIVASPCKPDIFTYAT 247

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
            +K   + G++  A + F  M  +  + DVV    I+        I  A  +F  M   G
Sbjct: 248 FIKALTKKGKLGTALKLFRGMWDKGGKPDVVICNCIIDALCFKKRIPEALEIFCDMSERG 307

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK--GYMPNSTTYNVVIRGLCHTGEMER 365
             P+VATYN++I+ +CK   ++    + +EM  K    +PN+ TY  +++ L   GE+ R
Sbjct: 308 CEPNVATYNSLIKYMCKIQRMKKVYELVDEMERKKGSCLPNAVTYCYLLKSLKEPGEVCR 367

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFC---DAGEIERGLELFEKMGSGVCLPNLDTYNI 422
            LE   RM+ + C  N   YN+++R +    D   + +  E  E+ G G   P+  +Y I
Sbjct: 368 VLE---RMERNGCGMNDDVYNMVLRLYMKWDDGDGVRKTWEEMERNGWG---PDRRSYTI 421

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           +I   F + +  D   A + L EM+ +G +P + T
Sbjct: 422 MIHENFEKGRVKD---AVRYLEEMISKGMVPERRT 453



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 102/232 (43%), Gaps = 3/232 (1%)

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           G  P+    N ++    +  + +E  +   EM KR+  +D   + T+V  F    ++  A
Sbjct: 97  GYQPSSDVCNEIVDILGKMQRFQELHQVLDEMSKREELLDEAVFATLVRRFVGAHKVDEA 156

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
             +F      G+  +   +  ++  LC+   VE+A  +F   V KG   +   +NV++ G
Sbjct: 157 IQLFYRRKEFGLELNSEAFRTLLMWLCRYKHVEDAEALFHNSVKKGLRADIKMWNVILNG 216

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
            C  G    A      +    C+P++ TY   I+     G++   L+LF  M      P+
Sbjct: 217 WCVLGNSHEAKRVWRDIVASPCKPDIFTYATFIKALTKKGKLGTALKLFRGMWDKGGKPD 276

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
           +   N +I ++  +K+  + L   ++  +M +RG  P   T+N ++  +  I
Sbjct: 277 VVICNCIIDALCFKKRIPEAL---EIFCDMSERGCEPNVATYNSLIKYMCKI 325


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/386 (26%), Positives = 193/386 (50%), Gaps = 8/386 (2%)

Query: 103 PSSFDHAI--DLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P  F ++I  D  +R  D + + +L  +     +     T +I+       GK   A ++
Sbjct: 166 PDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEV 225

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCL 219
             S+   G   +   +NT+++  C+  ++E A++ F   + +  K D I+YN + NG C 
Sbjct: 226 LQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCK 285

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
            +R   A ++L EM D G+NP + T+N ++  Y R GQ+E+ +    EM++   + +VV+
Sbjct: 286 AERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVS 345

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y +IV+ F   G+I  A  + D M +  VLP+   YNA+I    +    + A ++ E+M 
Sbjct: 346 YGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMK 405

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             G  P+  TYN++I+GLC+  ++  A E +  + +    P+  +YN LI   C  G I+
Sbjct: 406 SNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNID 465

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
           + L+L ++M        + TY+ LIS +    + +++     L  +M+    +P     N
Sbjct: 466 KALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEY---LYQKMMQNNVVPSNAIHN 522

Query: 460 RVLNGLLLIGNQGLAKEILR--LQSR 483
            ++      GN+  A+++ +  LQ R
Sbjct: 523 IMVEAYSKYGNEIKAEDLRKEMLQKR 548



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 163/380 (42%), Gaps = 41/380 (10%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   ++ ++      AG+   AV++F  M E     +  ++NT++D   K   +E  + L
Sbjct: 61  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 120

Query: 196 FK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
               V  G  K + I+YNV+ +G C   R  +   +L EM  + + P+  TY+I+  G  
Sbjct: 121 RDQMVCHG-LKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLS 179

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
           R G  +     F +  K    I   T + +++G    G++  A  V   +VN G++P+  
Sbjct: 180 RNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRV 239

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC--------------- 358
            YN +I   C+   +E A   F +M  +   P+  TYN +I GLC               
Sbjct: 240 IYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEM 299

Query: 359 --------------------HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
                                TG++E+    +  M+++  +PNV +Y  ++  FC  G+I
Sbjct: 300 QDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKI 359

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
              + + + M     LPN   YN +I +      +D   +   L+ +M   G  P   T+
Sbjct: 360 PEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFI---LVEKMKSNGISPSIVTY 416

Query: 459 NRVLNGLLLIGNQGLAKEIL 478
           N ++ GL        A+EI+
Sbjct: 417 NLLIKGLCNQSQISEAEEII 436



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 148/335 (44%), Gaps = 7/335 (2%)

Query: 133 SLGPTQKTFA--IIAERYVSAGKADRAVKIFLSMHEHGCRQ-SLNSFNTILDLLCKEKKV 189
           S G    TFA     +  V+AG    AV +   M   G    +  S+N ++  + +  + 
Sbjct: 20  SAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRG 79

Query: 190 EKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
             A  +F ++       + I+YN + +G            +  +MV  GL PN  TYN++
Sbjct: 80  GDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVL 139

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           L G  RAG++ E      EM  +K   D  TY+ +  G    G+ K   ++F   +  GV
Sbjct: 140 LSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGV 199

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
                T + ++  LCK   V  A  V + +V  G +P    YN +I G C TGE+E A  
Sbjct: 200 TIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFS 259

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
             G+MK    +P+  TYN LI   C A  I    +L  +M      P ++T+N LI +  
Sbjct: 260 TFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYG 319

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
              + +   +   +L EM + G  P   ++  ++N
Sbjct: 320 RTGQLEKCFI---VLSEMQENGLKPNVVSYGSIVN 351



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 102/234 (43%), Gaps = 4/234 (1%)

Query: 256 GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA-T 314
           G+  +  R F  +       D   +   V      G++  A  +   M   G  P  A +
Sbjct: 6   GRHADVRRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFS 65

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN +I  + +     +A+ VF+EM  +  +PN  TYN +I G    G++E       +M 
Sbjct: 66  YNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMV 125

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
               +PN  TYN+L+   C AG +     L ++M S   +P+  TY+IL   +     S 
Sbjct: 126 CHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSK 185

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            +L    L  + +  G     +T + +LNGL   G   +A+E+L+     G +P
Sbjct: 186 AML---SLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVP 236


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 114/416 (27%), Positives = 192/416 (46%), Gaps = 16/416 (3%)

Query: 82  HALKALH-----FFNILSYHPTYAHSPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSL 134
           H +K L      F ++L   P     PS  D    + +  R+     V +L  +M+   +
Sbjct: 55  HEIKGLEDAIDLFSDMLRSRPL----PSVVDFCKLMGVVVRMERPDLVISLYQKMERKQI 110

Query: 135 GPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN 194
                +F I+ + + S  K   A+  F  + + G    + +FNT+L  LC E +V +A N
Sbjct: 111 RCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALN 170

Query: 195 LF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
           LF ++F    + +V+++  + NG C   R  +A+ +L  M++ GL P   TY  ++ G  
Sbjct: 171 LFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMC 230

Query: 254 RAGQIEEAWRFFLEMKKRKCEI-DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
           + G    A     +M++    I +VV Y+ I+      G    A+N+F  M   G+ P +
Sbjct: 231 KKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDL 290

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            TYN+MI   C      +A  + +EM+ +   P+  TYN +I      G+   A E    
Sbjct: 291 FTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDE 350

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           M      PN  TY+ +I  FC    ++    +F  M +  C PNL T+N LI      K+
Sbjct: 351 MLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKR 410

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            DD +   +LL EM + G +    T+N +++G  L+G+   A ++L+     G  P
Sbjct: 411 IDDGM---ELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCP 463



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 113/431 (26%), Positives = 192/431 (44%), Gaps = 55/431 (12%)

Query: 83  ALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           AL        L  HP    + ++  H + +  R+ +      L H+M   +  P   TF 
Sbjct: 133 ALSTFGKLTKLGLHPDVV-TFNTLLHGLCVEDRVSE---ALNLFHQMFETTCRPNVVTFT 188

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-- 200
            +       G+   AV +   M E G + +  ++ TI+D +CK+     A NL +     
Sbjct: 189 TLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEV 248

Query: 201 GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
                +V+ Y+ I +  C   R + A  +  EM ++G+ P+L TYN ++ G+  +G+  +
Sbjct: 249 SHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSD 308

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
           A +   EM +RK   DVVTY  +++ F   G+   A  ++D M+  G++P+  TY++MI 
Sbjct: 309 AEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMID 368

Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
             CK++ ++ A  +F  M  KG  PN  T+N +I G C    ++  +E +  M +     
Sbjct: 369 GFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVA 428

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKM-GSGVC-------------------------- 413
           +  TYN LI  F   G++   L+L ++M  SG+C                          
Sbjct: 429 DTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMF 488

Query: 414 -------------------LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
                               P++ TYNILIS +    K    L A +L  EM  RG +P 
Sbjct: 489 KVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGK---FLEAEELYEEMPHRGIVPD 545

Query: 455 KFTFNRVLNGL 465
             T++ +++GL
Sbjct: 546 TITYSSMIDGL 556



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 154/309 (49%), Gaps = 12/309 (3%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T++ + + +    + D A  +F  M   GC  +L +FNT++D  C  K+++    L
Sbjct: 358 PNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMEL 417

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             ++      AD  +YN + +G+ LV   N AL++L+EM+  GL P++ T + +L G   
Sbjct: 418 LHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCD 477

Query: 255 AGQIEEAWRFFLEMKKRK-----------CEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            G++++A   F  M+K K            E DV TY  ++ G    G+   A  +++ M
Sbjct: 478 NGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEM 537

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            + G++P   TY++MI  LCK+  ++ A  +F+ M  K + PN  T+  +I G C  G +
Sbjct: 538 PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRV 597

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           +  LE    M       N  TY  LI  F   G I   L++F++M S    P+  T   +
Sbjct: 598 DDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNM 657

Query: 424 ISSMFVRKK 432
           ++ ++ +++
Sbjct: 658 LTGLWSKEE 666



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 181/396 (45%), Gaps = 17/396 (4%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           +   ID   +   +     L   M+   + P   T+  +   + S+G+   A ++   M 
Sbjct: 258 YSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEML 317

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKRT 223
           E      + ++N +++   KE K  +A  L+     RG    + I+Y+ + +G+C   R 
Sbjct: 318 ERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGII-PNTITYSSMIDGFCKQNRL 376

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A  +   M  +G +PNL T+N ++ GY  A +I++      EM +     D  TY T+
Sbjct: 377 DAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTL 436

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK-- 341
           +HGF +VG++  A ++   M++ G+ P + T + ++  LC    +++A+ +F+ M     
Sbjct: 437 IHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKK 496

Query: 342 ---------GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
                    G  P+  TYN++I GL + G+   A E    M      P+  TY+ +I   
Sbjct: 497 DLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGL 556

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
           C    ++   ++F+ MGS    PN+ T+  LI+      + DD L   +L  EM  RG +
Sbjct: 557 CKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGL---ELFCEMGRRGIV 613

Query: 453 PRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
               T+  ++ G   +GN   A +I +     G  P
Sbjct: 614 ANAITYITLICGFRKVGNINGALDIFQEMISSGVYP 649



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 152/326 (46%), Gaps = 19/326 (5%)

Query: 63  PSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDYR 120
           P+      ++D   K+  N    A H F +++   T   SP+  +F+  ID     +   
Sbjct: 358 PNTITYSSMIDGFCKQ--NRLDAAEHMFYLMA---TKGCSPNLITFNTLIDGYCGAKRID 412

Query: 121 TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180
               L+H M    L     T+  +   +   G  + A+ +   M   G    + + +T+L
Sbjct: 413 DGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLL 472

Query: 181 DLLCKEKKVEKAYNLFKVFRGKFK------------ADVISYNVIANGWCLVKRTNKALE 228
           D LC   K++ A  +FKV +   K             DV +YN++ +G     +  +A E
Sbjct: 473 DGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEE 532

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           + +EM  RG+ P+  TY+ ++ G  +  +++EA + F  M  +    +VVT+TT+++G+ 
Sbjct: 533 LYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYC 592

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G +     +F  M   G++ +  TY  +I    K  ++  A+ +F+EM+  G  P++ 
Sbjct: 593 KAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTI 652

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMK 374
           T   ++ GL    E++RA+  + +++
Sbjct: 653 TIRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 128/268 (47%), Gaps = 4/268 (1%)

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           + +G+  +K    A+++  +M+     P++  +  ++    R  + +     + +M++++
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
              D+ ++T ++  F    ++  A + F  +   G+ P V T+N ++  LC +D V  A+
Sbjct: 110 IRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEAL 169

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
            +F +M      PN  T+  ++ GLC  G +  A+  + RM +D  +P   TY  ++   
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 393 CDAGEIERGLELFEKMGS-GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
           C  G+    L L  KM      +PN+  Y+ +I S+    +  D   A  L  EM ++G 
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSD---AQNLFTEMQEKGI 286

Query: 452 MPRKFTFNRVLNGLLLIGNQGLAKEILR 479
            P  FT+N ++ G    G    A+++L+
Sbjct: 287 FPDLFTYNSMIVGFCSSGRWSDAEQLLQ 314



 Score = 42.7 bits (99), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 17/170 (10%)

Query: 328 VENAILVFEEMVGKGYMPNSTTY----NVVIRGLCHTGEMER---ALEFVGRMKDDECEP 380
           +E+AI +F +M+    +P+   +     VV+R       MER    +    +M+  +   
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVR-------MERPDLVISLYQKMERKQIRC 112

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAG 440
           ++ ++ ILI+ FC   ++   L  F K+      P++ T+N L+  + V  +  + L   
Sbjct: 113 DIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEAL--- 169

Query: 441 KLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
            L  +M +    P   TF  ++NGL   G    A  +L      G  P Q
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQ 219


>gi|449449535|ref|XP_004142520.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
           mitochondrial-like [Cucumis sativus]
 gi|449518358|ref|XP_004166209.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
           mitochondrial-like [Cucumis sativus]
          Length = 455

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 109/415 (26%), Positives = 185/415 (44%), Gaps = 41/415 (9%)

Query: 70  QLVDQIIKRLWNHALKALHFFN-ILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHR 128
           +LV ++++   N   ++  FFN   S++P+Y  +   F+  +   AR R Y T+W ++ +
Sbjct: 73  ELVFRVLRACSNSGTESFRFFNWACSHNPSYQPTTLEFEELVKTLARTRKYTTMWKVLLQ 132

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH-GCRQSLNSFNTILDLLCKEK 187
           MK+ +L  + +T + I + Y   G  D AV IF    +   C Q++  +N +L  LC+ K
Sbjct: 133 MKTQNLKISPETISFIIQEYGKQGLVDNAVTIFNQCSKSIDCPQTVEVYNALLFALCEVK 192

Query: 188 KVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
               AY L + + R     D  +Y  +  GWC   +  +A E L+EM  +G NP L   +
Sbjct: 193 MFHGAYALIRRMIRKGVTPDKKTYGTLVTGWCSAGKMKEAQEFLEEMSQKGFNPPLRGRD 252

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
           ++++G   AG +E A     +M K     D+ T+ +++      GE+    N+F  +   
Sbjct: 253 LLVEGLLNAGYLESAKDMVRKMTKEGSVPDIGTFNSLIDVICNSGEVDFCINIFHEVCKL 312

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G+ P + TY  +I    K   ++ A  +    +  G++P  + Y  +++G+C  G+ + A
Sbjct: 313 GLCPDINTYKILIPATSKVGRIDEAFRLLHCCIEDGHVPFPSLYGPILKGMCKRGQFDDA 372

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
             F G MK     PN   Y +LI   C  G                              
Sbjct: 373 FCFFGDMKHKGHPPNRPVYTMLIT-MCGRG-----------------------------G 402

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481
            FV         A   L+EM + G  P    F+ V +GL   G   LAK+I +L+
Sbjct: 403 RFVD--------AANYLMEMAELGLPPISRCFDMVTDGLKNCGKHDLAKKIEQLE 449



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 68/179 (37%), Gaps = 39/179 (21%)

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST-TYNVVIRGLCHTGEMERALEF 369
           S  T + +IQ   K+  V+NA+ +F +       P +   YN ++  LC       A   
Sbjct: 141 SPETISFIIQEYGKQGLVDNAVTIFNQCSKSIDCPQTVEVYNALLFALCEVKMFHGAYAL 200

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
           + RM      P+ +TY  L+  +C AG+++   E  E                       
Sbjct: 201 IRRMIRKGVTPDKKTYGTLVTGWCSAGKMKEAQEFLE----------------------- 237

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
                          EM  +GF P     + ++ GLL  G    AK+++R  ++ G +P
Sbjct: 238 ---------------EMSQKGFNPPLRGRDLLVEGLLNAGYLESAKDMVRKMTKEGSVP 281


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/389 (26%), Positives = 190/389 (48%), Gaps = 14/389 (3%)

Query: 82  HALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYR--TVWTLVHRMKSLSLGPTQK 139
           H  K L    I+    T    P    ++I + A  +D        L++ MK  ++ P   
Sbjct: 183 HTEKTLSLLRIMEQGNT---KPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIF 239

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-V 198
           T+  + +     G+ ++   +   M       ++++F+ ++D LCKE KVE A  + + +
Sbjct: 240 TYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHM 299

Query: 199 FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
                + D+I+Y+ I +G+CL  + ++A  V   + D+G+ PN+ +Y+I++ GY +   +
Sbjct: 300 IEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNL 359

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
            +A + F E+ ++  + D VTY+TI+HG   VG I  A+ +FD M+  G  P +  ++ +
Sbjct: 360 AKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTL 419

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           +    K   VE A+L+F ++       N + Y VVI GLC    +  A     ++     
Sbjct: 420 LFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGL 479

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
            P+V+TYN++I  FC  G  +    +  KM    C  N  TYN+++   F   K  +++ 
Sbjct: 480 IPDVRTYNVMITGFCREGLFDEVKGILRKMEDNGCPANNITYNVIMQGFFRSNKISEIV- 538

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467
               + EM  RG     F+F+    G+L+
Sbjct: 539 --SFMKEMAGRG-----FSFDATTTGVLI 560



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 182/375 (48%), Gaps = 12/375 (3%)

Query: 116 LRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS 175
           ++ Y  V +L   M+ L +  +     I+   Y    + D A  +     + G   ++ +
Sbjct: 75  MKHYSAVVSLFREMRILGIPISDSILNIVTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVT 134

Query: 176 FNTILDLLCKEKKVEKAYNLFK-VFRGKF-KADVISYNVIANGWCLVKRTNKALEVLKEM 233
           FNT+L  L  E KV  A  LFK + R K  + + + Y  + NG      T K L +L+ M
Sbjct: 135 FNTLLGGLFAENKVTDAVVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIM 194

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
                 P++ TY+IV+    +   ++ A     EMK++    ++ TY +++ G   +G+ 
Sbjct: 195 EQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQW 254

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           ++ + +   MVN  + P+V T++ +I  LCK+  VE+A  V   M+ KG  P+  TY+ +
Sbjct: 255 EKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAI 314

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           + G C  G+++RA      ++D   +PN+ +Y+ILI  +C    + + ++LF ++     
Sbjct: 315 MDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGL 374

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG--NQ 471
            P+  TY+ ++  +    +  D   A K+  EM+  G  P     +  L+  LL G    
Sbjct: 375 KPDTVTYSTILHGLIEVGRIGD---AKKIFDEMLRVGPTP-----DICLHSTLLFGYFKY 426

Query: 472 GLAKEILRLQSRCGR 486
           GL +E + L S+  R
Sbjct: 427 GLVEEAMLLFSKLER 441



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 161/337 (47%), Gaps = 7/337 (2%)

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR--GKFKADVISYNV 212
           D AV +F  M       S+  F+ +   +   K      +LF+  R  G   +D I  N+
Sbjct: 44  DDAVSLFHRMVRMKPLPSVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSI-LNI 102

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           + N +CL  R + A  VL   +  G+  N+ T+N +L G F   ++ +A   F ++ + K
Sbjct: 103 VTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVREK 162

Query: 273 -CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
            CE + V Y T+++G    G  ++  ++   M  G   P V TY+ +I  LCK  +++ A
Sbjct: 163 ICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAA 222

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
           I +  EM  K   PN  TYN +I GLC  G+ E+    +  M +    PNV T++ILI  
Sbjct: 223 INLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDG 282

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
            C  G++E   E+   M      P++ TY+ ++    +R + D    A ++   + D+G 
Sbjct: 283 LCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDR---ARRVFNVLRDKGI 339

Query: 452 MPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            P  F+++ ++NG     N   A ++    S+ G  P
Sbjct: 340 KPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKP 376



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 158/372 (42%), Gaps = 75/372 (20%)

Query: 189 VEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           ++ A +LF ++ R K    VI ++ +      +K  +  + + +EM   G+  + +  NI
Sbjct: 43  LDDAVSLFHRMVRMKPLPSVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSILNI 102

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG--------------------- 286
           V   Y    +I+ A+       K     +VVT+ T++ G                     
Sbjct: 103 VTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVREK 162

Query: 287 --------FGVV-------GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
                   +G V       G  ++  ++   M  G   P V TY+ +I  LCK  +++ A
Sbjct: 163 ICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAA 222

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
           I +  EM  K   PN  TYN +I GLC  G+ E+    +  M +    PNV T++ILI  
Sbjct: 223 INLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDG 282

Query: 392 FCDAGE-----------IERGLE----LFEKMGSGVCL--------------------PN 416
            C  G+           IE+G+E     +  +  G CL                    PN
Sbjct: 283 LCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPN 342

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKE 476
           + +Y+ILI+  + +KK  +L  A +L  E+  +G  P   T++ +L+GL+ +G  G AK+
Sbjct: 343 IFSYSILING-YCKKK--NLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKK 399

Query: 477 ILRLQSRCGRLP 488
           I     R G  P
Sbjct: 400 IFDEMLRVGPTP 411



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 108/251 (43%), Gaps = 6/251 (2%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAA--RLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           +A   FN+L         P+ F ++I +    + ++      L   +    L P   T++
Sbjct: 326 RARRVFNVLR---DKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYS 382

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRG 201
            I    +  G+   A KIF  M   G    +   +T+L    K   VE+A  LF K+ R 
Sbjct: 383 TILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERN 442

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
           +   ++  Y V+ NG C   R  +A  + +++   GL P++ TYN+++ G+ R G  +E 
Sbjct: 443 REDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEV 502

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
                +M+   C  + +TY  I+ GF    +I    +    M   G      T   +I V
Sbjct: 503 KGILRKMEDNGCPANNITYNVIMQGFFRSNKISEIVSFMKEMAGRGFSFDATTTGVLINV 562

Query: 322 LCKKDSVENAI 332
           L +  S+ + I
Sbjct: 563 LKENPSIVDMI 573


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 114/411 (27%), Positives = 182/411 (44%), Gaps = 77/411 (18%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG---CRQSLNSFNTILDLLC 184
           RM  L   P   ++  + +      K+  A+++ + M   G   C  ++ S+NT++D   
Sbjct: 152 RMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVIDGFF 211

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           KE +V+KAY LF    G+    DV++YN + +G C  +  +KA+ +L+ M D+G+ P+  
Sbjct: 212 KEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTR 271

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYNI+++GY   GQ+EEA R   +M     + DVVTY+ ++  +  +G    AR+VFD M
Sbjct: 272 TYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSM 331

Query: 304 VNGGVLPSVATY-----------------------------------NAMIQVLCKKDSV 328
           V  G  P+   Y                                   N +I    K  +V
Sbjct: 332 VRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAV 391

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           + A+  F EM   G  P+  +Y+ VI  LC TG +E A+    +M  +   PN+ ++  L
Sbjct: 392 DKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSL 451

Query: 389 IRYFCDAGEIERGLEL-FEKMGSGV----------------------------------C 413
           I   C  GE ++  EL FE +  G+                                   
Sbjct: 452 IHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGV 511

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
            P++ +YN LI       K D+ +   K L  MV  G  P  +T+N +LNG
Sbjct: 512 KPDVVSYNTLIDGYCFVGKMDESI---KQLDRMVSIGLRPDSWTYNSLLNG 559



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 164/326 (50%), Gaps = 4/326 (1%)

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186
           ++M S  L P   +F  +     S G+  +  ++   M   G        NTI+D LCKE
Sbjct: 434 NQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKE 493

Query: 187 KKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
            +V +A + F  V     K DV+SYN + +G+C V + +++++ L  MV  GL P+  TY
Sbjct: 494 GRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTY 553

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           N +L GYF+ G++E+A   + EM ++  +   +T   ++HG    G I  AR ++  MV+
Sbjct: 554 NSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMVD 613

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G    + TYN ++  LC+   V+ A+ +FE++  K +  +  T+++VI  L   G ++ 
Sbjct: 614 RGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRIDE 673

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           A      M      P+V TY+++I+   + G +E    LF  M    C  +    NI++ 
Sbjct: 674 AKSLFSAMVLRGPVPDVITYSLMIKSHIEEGLLEESDNLFLSMEKNGCAADSHMLNIIVR 733

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGF 451
            +    +  D+  AG  L ++ ++ F
Sbjct: 734 RLL---EKGDVRRAGTYLTKIDEKNF 756



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 167/342 (48%), Gaps = 4/342 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+ +M    L P   T++++ + Y   G+   A  +F SM   G + +   ++ +L    
Sbjct: 292 LLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYA 351

Query: 185 KEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            +  +    +L  +  R     +  ++N++   +      +KA+    EM   GL P++ 
Sbjct: 352 TKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVV 411

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           +Y+ V+    + G++E+A   F +M       +++++T+++HG   +GE K+   +   M
Sbjct: 412 SYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEM 471

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           +N G+ P     N ++  LCK+  V  A   F+ ++  G  P+  +YN +I G C  G+M
Sbjct: 472 INRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKM 531

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + +++ + RM      P+  TYN L+  +   G +E  L L+ +M          T NI+
Sbjct: 532 DESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIM 591

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           +  +F   ++  ++ A +L ++MVDRG   R  T+N VL GL
Sbjct: 592 LHGLF---QAGRIVAARELYMKMVDRGTQLRIETYNTVLGGL 630



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 132/259 (50%), Gaps = 1/259 (0%)

Query: 132 LSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEK 191
           + + P   ++  + + Y   GK D ++K    M   G R    ++N++L+   K  +VE 
Sbjct: 509 IGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVED 568

Query: 192 AYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250
           A  L++ +FR   K   I+ N++ +G     R   A E+  +MVDRG    + TYN VL 
Sbjct: 569 ALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLG 628

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
           G      ++EA R F +++ ++ E+DV T++ +++    VG I  A+++F  MV  G +P
Sbjct: 629 GLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVP 688

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
            V TY+ MI+   ++  +E +  +F  M   G   +S   N+++R L   G++ RA  ++
Sbjct: 689 DVITYSLMIKSHIEEGLLEESDNLFLSMEKNGCAADSHMLNIIVRRLLEKGDVRRAGTYL 748

Query: 371 GRMKDDECEPNVQTYNILI 389
            ++ +        T  +LI
Sbjct: 749 TKIDEKNFSLEASTAALLI 767



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 89/190 (46%), Gaps = 9/190 (4%)

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
           A ++F+ MV  GV    A    +I+  C    ++ A   F   +  G+   + T N +I+
Sbjct: 75  AVSLFNTMVRSGVNMMAAIIGILIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLIK 134

Query: 356 GLCHTGEMERALEFV-GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM---GSG 411
           GLC     + A++ V  RM +    P+V +YN LI+  C   + +  LEL   M   G  
Sbjct: 135 GLCDGNRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGY 194

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
            C PN+ +YN +I   F   + D    A  L  EM+ +G  P   T+N +++G  L   Q
Sbjct: 195 NCSPNVVSYNTVIDGFFKEGEVDK---AYFLFHEMMGQGLPPDVVTYNSLIDG--LCKAQ 249

Query: 472 GLAKEILRLQ 481
            + K +  LQ
Sbjct: 250 AMDKAVAILQ 259


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/434 (25%), Positives = 196/434 (45%), Gaps = 44/434 (10%)

Query: 72  VDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRT--VWTLVHRM 129
           ++Q++K L +          +L   P     P +  + I L     + R      L+H M
Sbjct: 128 INQLLKGLCHGKRVGEAMDVLLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMM 187

Query: 130 KS---LSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186
                    P   +++I+   + + G+ D+   +FL M + G    + ++ T++D LCK 
Sbjct: 188 ADDHGRRCPPNVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKA 247

Query: 187 KKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
           +  ++A  +F ++    FK +  +YN + +G+  + +  + +++L+EM  RGL P+  TY
Sbjct: 248 QLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTY 307

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV---------------- 289
             +L    + G+  EA  FF  M ++  +  V TY  ++HG+                  
Sbjct: 308 GSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVE 367

Query: 290 -------------------VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
                               G I +A ++F+ M   G+ P+V  Y A+I  LCK   V++
Sbjct: 368 NGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDD 427

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           A + F +M+ +G  PN   +N ++ GLC   + ERA E V  M D    PN   +N LI 
Sbjct: 428 AEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLIC 487

Query: 391 YFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450
             C+ G +  G  L + M      P+  +Y  LIS   +  ++D+   A K+   MV  G
Sbjct: 488 NLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDE---AEKVFDGMVSIG 544

Query: 451 FMPRKFTFNRVLNG 464
             P + T+N +L+G
Sbjct: 545 LSPTEVTYNTLLHG 558



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 117/439 (26%), Positives = 191/439 (43%), Gaps = 50/439 (11%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLR-DYRTVWTLVH-----RMKSLSLGPTQK 139
           AL  F+ L +H   A S  +F+H +   +R R    +   + H     R  S  + P   
Sbjct: 33  ALKLFDELLHHARPA-SVRAFNHLLTAVSRARCSSASELAVSHFNRMVRECSDKVAPNLC 91

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF--K 197
           T++I+  R+   G  +     F  + + G R    + N +L  LC  K+V +A ++   +
Sbjct: 92  TYSILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHGKRVGEAMDVLLQR 151

Query: 198 VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD---RGLNPNLTTYNIVLKGYFR 254
           +       D +SY ++  G C  KR  +ALE+L  M D   R   PN+ +Y+IV+ G+F 
Sbjct: 152 MPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVINGFFT 211

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            GQ+++ +  FLEM  R    DVVTYTT++ G        RA  VF  M++ G  P+  T
Sbjct: 212 EGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYT 271

Query: 315 YNAMIQ-----------------------------------VLCKKDSVENAILVFEEMV 339
           YN +I                                     LCK      A   F+ M+
Sbjct: 272 YNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMI 331

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            KG  P  +TY ++I G    G +     F+  M ++   P+   +NI    +   G I+
Sbjct: 332 RKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMID 391

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
           + +++F KM      PN+  Y  LI ++    + DD  V      +M++ G  P    FN
Sbjct: 392 KAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVK---FNQMINEGVTPNIVVFN 448

Query: 460 RVLNGLLLIGNQGLAKEIL 478
            ++ GL  +     A+E++
Sbjct: 449 SLVYGLCTVDKWERAEELV 467



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 177/373 (47%), Gaps = 9/373 (2%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM-HEHG--CRQSLNSFNTILD 181
           L+ RM  L   P   ++ I+ +   +  +A+ A+++   M  +HG  C  ++ S++ +++
Sbjct: 148 LLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVIN 207

Query: 182 LLCKEKKVEKAYNLF--KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
               E +V+K YNLF   + RG    DV++Y  + +G C  +  ++A  V ++M+D G  
Sbjct: 208 GFFTEGQVDKPYNLFLEMIDRG-IPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFK 266

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           PN  TYN ++ GY   G+ +E  +   EM  R  + D  TY ++++     G  + AR  
Sbjct: 267 PNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFF 326

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
           FD M+  G+ P V+TY  +I     K ++       + MV  G  P+   +N+       
Sbjct: 327 FDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAK 386

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419
            G +++A++   +M+     PNV  Y  LI   C  G ++     F +M +    PN+  
Sbjct: 387 CGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVV 446

Query: 420 YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           +N L+  +    K +    A +L+ EM+D+G  P    FN ++  L  +G     + ++ 
Sbjct: 447 FNSLVYGLCTVDKWER---AEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLID 503

Query: 480 LQSRCGRLPRQFK 492
           L    G  P  F 
Sbjct: 504 LMEHVGVRPDAFS 516



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/370 (27%), Positives = 170/370 (45%), Gaps = 9/370 (2%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           KA+  FN +  H     SP+  ++   ID   +L          ++M +  + P    F 
Sbjct: 392 KAMDIFNKMRQH---GLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFN 448

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG- 201
            +     +  K +RA ++   M + G   +   FNT++  LC   +V +   L  +    
Sbjct: 449 SLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHV 508

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
             + D  SY  + +G+CL  RT++A +V   MV  GL+P   TYN +L GY  A +I++A
Sbjct: 509 GVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDA 568

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
           +  F EM ++     VVTY TI+HG         A+ ++  M+N G    + TYN ++  
Sbjct: 569 YCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNG 628

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           LCK + V+ A  +F+ +  KG   N  T+ ++I  L   G  E A++    +  +   PN
Sbjct: 629 LCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPN 688

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
           V TY ++     + G +E    LF  M      PN    N L+  +  R    D+  AG 
Sbjct: 689 VVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHR---GDISRAGA 745

Query: 442 LLIEMVDRGF 451
            L ++ +R F
Sbjct: 746 YLSKLDERNF 755



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 171/374 (45%), Gaps = 4/374 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   ID   + + +     +  +M      P   T+  +   Y+S GK    V++   M
Sbjct: 236 TYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEM 295

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
              G +    ++ ++L+ LCK  +  +A   F  + R   K  V +Y ++ +G+      
Sbjct: 296 SARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGAL 355

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           ++    L  MV+ GL+P+   +NI    Y + G I++A   F +M++     +VV Y  +
Sbjct: 356 SEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGAL 415

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +     +G +  A   F+ M+N GV P++  +N+++  LC  D  E A  +  EM+ +G 
Sbjct: 416 IDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGI 475

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN+  +N +I  LC+ G +      +  M+     P+  +Y  LI  +C  G  +   +
Sbjct: 476 CPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEK 535

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           +F+ M S    P   TYN L+       + DD   A  L  EM+ +G  P   T+N +L+
Sbjct: 536 VFDGMVSIGLSPTEVTYNTLLHGYCSASRIDD---AYCLFREMLRKGVTPGVVTYNTILH 592

Query: 464 GLLLIGNQGLAKEI 477
           GL        AKE+
Sbjct: 593 GLFQTKRFSEAKEL 606



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 157/364 (43%), Gaps = 50/364 (13%)

Query: 143 IIAERYVSAGKA-DRAVKIFLSMHEHGCRQSLNSFNTILDLL------------------ 183
           IIAER  S     D A+K+F  +  H    S+ +FN +L  +                  
Sbjct: 18  IIAERARSRSLGLDDALKLFDELLHHARPASVRAFNHLLTAVSRARCSSASELAVSHFNR 77

Query: 184 -----------------------CKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCL 219
                                  C+   +E  +  F  + +  ++ D I+ N +  G C 
Sbjct: 78  MVRECSDKVAPNLCTYSILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCH 137

Query: 220 VKRTNKALEV-LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK---RKCEI 275
            KR  +A++V L+ M + G  P+  +Y I+LKG     + EEA      M     R+C  
Sbjct: 138 GKRVGEAMDVLLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPP 197

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
           +VV+Y+ +++GF   G++ +  N+F  M++ G+ P V TY  +I  LCK    + A  VF
Sbjct: 198 NVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVF 257

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
           ++M+  G+ PN+ TYN +I G    G+ +  ++ +  M     +P+  TY  L+ Y C  
Sbjct: 258 QQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKN 317

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
           G        F+ M      P + TY ILI     +    ++      L  MV+ G  P  
Sbjct: 318 GRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEM---HSFLDLMVENGLSPDH 374

Query: 456 FTFN 459
             FN
Sbjct: 375 HIFN 378



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 139/269 (51%), Gaps = 1/269 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M+ + + P   ++  +   Y   G+ D A K+F  M   G   +  ++NT+L   C
Sbjct: 501 LIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYC 560

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
              +++ AY LF+ + R      V++YN I +G    KR ++A E+   M++ G   ++ 
Sbjct: 561 SASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIY 620

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYNI+L G  ++  ++EA++ F  +  +  +++++T+T ++      G  + A ++F  +
Sbjct: 621 TYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAI 680

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G++P+V TY  + + L ++ S+E    +F  M   G  PNS   N ++R L H G++
Sbjct: 681 PANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDI 740

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYF 392
            RA  ++ ++ +        T ++L+  F
Sbjct: 741 SRAGAYLSKLDERNFSVEASTTSLLMSIF 769



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 132/306 (43%), Gaps = 16/306 (5%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           LV+ M    + P    F  +     + G+     ++   M   G R    S+  ++   C
Sbjct: 466 LVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYC 525

Query: 185 KEKKVEKAYNLFKVFRGKFKADV----ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
              + ++A    KVF G     +    ++YN + +G+C   R + A  + +EM+ +G+ P
Sbjct: 526 LTGRTDEAE---KVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTP 582

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
            + TYN +L G F+  +  EA   +L M     + D+ TY  I++G      +  A  +F
Sbjct: 583 GVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMF 642

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
             + + G+  ++ T+  MI  L K    E+A+ +F  +   G +PN  TY +V   L   
Sbjct: 643 QSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEE 702

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
           G +E        M+ +   PN Q  N L+R     G+I R         +G  L  LD  
Sbjct: 703 GSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISR---------AGAYLSKLDER 753

Query: 421 NILISS 426
           N  + +
Sbjct: 754 NFSVEA 759



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 130/275 (47%), Gaps = 13/275 (4%)

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA---GQIEEAWRFFLEMKKR---KCEIDV 277
           + AL++  E++      ++  +N +L    RA      E A   F  M +    K   ++
Sbjct: 31  DDALKLFDELLHHARPASVRAFNHLLTAVSRARCSSASELAVSHFNRMVRECSDKVAPNL 90

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI-LVFE 336
            TY+ ++  F  +G ++     F  ++  G        N +++ LC    V  A+ ++ +
Sbjct: 91  CTYSILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHGKRVGEAMDVLLQ 150

Query: 337 EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE---CEPNVQTYNILIRYFC 393
            M   G MP++ +Y ++++GLC+    E ALE +  M DD    C PNV +Y+I+I  F 
Sbjct: 151 RMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVINGFF 210

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
             G++++   LF +M      P++ TY  +I  +   +  D    A  +  +M+D GF P
Sbjct: 211 TEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDR---AEGVFQQMIDNGFKP 267

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             +T+N +++G L IG      ++L   S  G  P
Sbjct: 268 NNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKP 302


>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
          Length = 825

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/357 (29%), Positives = 173/357 (48%), Gaps = 7/357 (1%)

Query: 135 GPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN 194
            PT  T+ I+   Y  A + D  + +F  +   G    + S+N ++D   KE +V+KA++
Sbjct: 186 APTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHD 245

Query: 195 LF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
           LF K+       +V++Y+ + NG C  K  +KA  VL++MV  G+ PN  TYN ++ GY 
Sbjct: 246 LFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYS 305

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
            +G  +E+ R F EM       DV    + +      G IK AR++FD MV  G  P V 
Sbjct: 306 TSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVI 365

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           +Y A++        +     +F  MV +G +P+   +N +I      G M+++L     M
Sbjct: 366 SYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDM 425

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
                 P++ T++ +I  FC  G ++  +E F  M      P+   Y+ LI     R+  
Sbjct: 426 TKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRR-- 483

Query: 434 DDLLVAGKLLIEMVDRGFMPR--KFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            DL+ A +L+ +M+ +G  P   KF F  ++N L   G     K+++ L    G+ P
Sbjct: 484 -DLVKAKELISDMLSKGIPPPCIKF-FTSIINNLCKEGRVAEGKDVVDLIIHTGQRP 538



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 97/395 (24%), Positives = 194/395 (49%), Gaps = 7/395 (1%)

Query: 97  PTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADR 156
           P  A +  +++  I+   R R       +  R+    LGP   ++  + + +   G+ D+
Sbjct: 183 PEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDK 242

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIAN 215
           A  +F  M E G   ++ +++++++ LCK K+++KA  + +   G   + + ++YN + +
Sbjct: 243 AHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIH 302

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
           G+       +++ V KEM    L P++   N  +    + G+I+EA   F  M  +  + 
Sbjct: 303 GYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKP 362

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
           DV++Y  ++HG+   G I    N+F+ MV  GV+P    +N +I    +   ++ ++L+F
Sbjct: 363 DVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMF 422

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
           E+M  +G  P+  T++ VI   C  G ++ A+E    M D    P+   Y+ LI+  C+ 
Sbjct: 423 EDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNR 482

Query: 396 GEIERGLELFEKMGS-GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM-VDRGFMP 453
            ++ +  EL   M S G+  P +  +  +I+++    +    +  GK ++++ +  G  P
Sbjct: 483 RDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGR----VAEGKDVVDLIIHTGQRP 538

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
              TFN +++G  L+GN   A  +L      G  P
Sbjct: 539 NLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEP 573



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 171/379 (45%), Gaps = 42/379 (11%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++ +M    + P   T+  +   Y ++G    +V++F  M        + + N+ +  LC
Sbjct: 281 VLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALC 340

Query: 185 KEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           K  ++++A ++F   V +G  K DVISY  + +G+           +   MV  G+ P+ 
Sbjct: 341 KHGRIKEARDIFDSMVLKGP-KPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDR 399

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
             +N ++  Y R G ++++   F +M K+    D++T++T++  F  +G +  A   F+ 
Sbjct: 400 HVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNH 459

Query: 303 MVNGGVLPSVATYNAMIQ------------------------------------VLCKKD 326
           M++ GV P  A Y+ +IQ                                     LCK+ 
Sbjct: 460 MIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEG 519

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            V     V + ++  G  PN  T+N ++ G C  G M+ A+  +  M+    EP++ TYN
Sbjct: 520 RVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYN 579

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            L+  +C  G I+  L LF  M          +YNI++  +F  +++   +VA ++  EM
Sbjct: 580 TLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRT---IVAKEMFHEM 636

Query: 447 VDRGFMPRKFTFNRVLNGL 465
           ++ G      T+  VL GL
Sbjct: 637 IESGMAVSIHTYATVLGGL 655



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 151/319 (47%), Gaps = 13/319 (4%)

Query: 176 FNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           F +I++ LCKE +V +  ++   +     + ++I++N + +G+CLV    +A+ +L  M 
Sbjct: 508 FTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSME 567

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
             G+ P++ TYN ++ GY + G+I++A   F +M  ++  +  V+Y  I+HG        
Sbjct: 568 SVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTI 627

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
            A+ +F  M+  G+  S+ TY  ++  LC+ +  + A ++ E++       +  T+N+VI
Sbjct: 628 VAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVI 687

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
           R +   G  + A E    +      P + TY ++I         E    LF  M    C 
Sbjct: 688 RAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCT 747

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           P+    N +I  +       ++  AG  L ++  +G +P   T + +   + L    G  
Sbjct: 748 PDSRILNEIIRMLL---NKGEVAKAGNYLSKIDKKGILPEATTTSLL---IYLFSVNGKY 801

Query: 475 KEILRLQSRCGRLPRQFKL 493
           +E ++L      LP +++ 
Sbjct: 802 REYIKL------LPEKYRF 814



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 132/271 (48%), Gaps = 1/271 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   TF  + + Y   G    AV +  SM   G    + ++NT++D  CK  +++ A  L
Sbjct: 538 PNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTL 597

Query: 196 FK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F+ +   +     +SYN+I +G    +RT  A E+  EM++ G+  ++ TY  VL G  R
Sbjct: 598 FRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCR 657

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
               +EA     ++     + D++T+  ++     VG  + A+ +F  +   G++P++ T
Sbjct: 658 NNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYGLVPTILT 717

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y  MI  L K++S E+A  +F  M      P+S   N +IR L + GE+ +A  ++ ++ 
Sbjct: 718 YRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAGNYLSKID 777

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELF 405
                P   T ++LI  F   G+    ++L 
Sbjct: 778 KKGILPEATTTSLLIYLFSVNGKYREYIKLL 808



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 96/208 (46%), Gaps = 6/208 (2%)

Query: 114 ARLRDYRTVW-TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
            R+ D  T++  ++H+  +L    T  ++ II      A +   A ++F  M E G   S
Sbjct: 589 GRIDDALTLFRDMLHKRVTL----TSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVS 644

Query: 173 LNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLK 231
           ++++ T+L  LC+    ++A  L  K+F    K D++++N++      V R  +A E+  
Sbjct: 645 IHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFA 704

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
            +   GL P + TY +++    +    E+A   F  M+K  C  D      I+      G
Sbjct: 705 AISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNKG 764

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMI 319
           E+ +A N    +   G+LP   T + +I
Sbjct: 765 EVAKAGNYLSKIDKKGILPEATTTSLLI 792


>gi|297832366|ref|XP_002884065.1| hypothetical protein ARALYDRAFT_343373 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329905|gb|EFH60324.1| hypothetical protein ARALYDRAFT_343373 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1056

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/399 (28%), Positives = 187/399 (46%), Gaps = 14/399 (3%)

Query: 46  LILTSTDPRTLTQTLHCPSLHWTPQLV----DQIIKRLWNH--ALKALHFFNILSYHPTY 99
           ++L S+    LT+ L  P L  +  L     D I++ + +   A  AL  F   S  P +
Sbjct: 1   MLLASSRYVPLTRRLWLPQLRSSSLLSVPSDDHIVRLILDQKSASGALETFRWASTFPGF 60

Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRM-KSLSLGPTQKTFAIIAERYVSAGKADRAV 158
            HS S++          R + TV+ L+  M +S  L P    F  I   +  A    R +
Sbjct: 61  IHSRSTYRALFYKLCVFRRFDTVYQLLDEMPESTGLPPDDAIFVTIIRGFGRARLTKRVI 120

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF--KVFRGKFKADVISYNVIANG 216
            +   + + G + SL  FN+ILD+L KE  ++ A   F  K+     + D  +Y ++  G
Sbjct: 121 SVVDLVSKFGIKPSLKVFNSILDVLVKED-IDIAREFFRRKMMASGIQGDEYTYGILMKG 179

Query: 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID 276
            CL  R     ++L+ M   G+ PN   YN +L    + G++  A     EMK    E +
Sbjct: 180 LCLTNRIGDGFKLLQIMKTCGVAPNTVVYNTLLHALCKNGKVGRARSLMSEMK----EPN 235

Query: 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE 336
            VT+  ++  +    ++ ++  + +   + G++P V T   +++VLC +  V  A+ V E
Sbjct: 236 DVTFNILISAYCNEQKLIQSMVLLEKCFSLGLVPDVVTVTKVMEVLCNEGRVSEALEVLE 295

Query: 337 EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
            +  KG   +    N +++G C  G+M  A  F   M+     PNV+TYN+LI  FCD G
Sbjct: 296 RVESKGGKVDVVACNTLVKGYCAVGKMRVAQRFFQEMERKGYLPNVETYNLLIAGFCDVG 355

Query: 397 EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
            ++  L+ F  M +     N  T+N LI  + VR ++DD
Sbjct: 356 MLDSALDTFNDMKTDAIRWNFATFNTLIRGLSVRGRTDD 394



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 157/366 (42%), Gaps = 43/366 (11%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           +L+  MK     P   TF I+   Y +  K  +++ +       G    + +   ++++L
Sbjct: 226 SLMSEMKE----PNDVTFNILISAYCNEQKLIQSMVLLEKCFSLGLVPDVVTVTKVMEVL 281

Query: 184 CKEKKVEKAYNLFKVFRGKF-KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           C E +V +A  + +    K  K DV++ N +  G+C V +   A    +EM  +G  PN+
Sbjct: 282 CNEGRVSEALEVLERVESKGGKVDVVACNTLVKGYCAVGKMRVAQRFFQEMERKGYLPNV 341

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TYN+++ G+   G ++ A   F +MK      +  T+ T++ G  V G       + + 
Sbjct: 342 ETYNLLIAGFCDVGMLDSALDTFNDMKTDAIRWNFATFNTLIRGLSVRGRTDDGIKILEL 401

Query: 303 MVNGGVL--PSVATYNAMIQ---------------------------------VLCKKDS 327
           M +   +    +  YN++I                                   LC+K  
Sbjct: 402 MQDSETVHGARIDPYNSVIYGFYKENRWEDALEFLLKMEKLFPRAVDRSFKLISLCEKGG 461

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
           +++    +++M G+G +P+    + +I      G ME  LE +  M      P   T+N 
Sbjct: 462 MDDVKTAYDQMTGEGGVPSVIVSHCLIHRYSQEGYMEETLELINDMVTRGYLPRSSTFNA 521

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           +I  FC   ++  G++  E M    C+P+ ++YN L+  + V+    D+  A  LL  MV
Sbjct: 522 VIIGFCKEDKVMNGIKFVEDMAERGCVPDRESYNPLLEELCVKG---DIQKAWLLLSLMV 578

Query: 448 DRGFMP 453
           ++  +P
Sbjct: 579 EKSIVP 584



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/371 (23%), Positives = 169/371 (45%), Gaps = 35/371 (9%)

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186
            +M +  +   + T+ I+ +      +     K+   M   G   +   +NT+L  LCK 
Sbjct: 159 RKMMASGIQGDEYTYGILMKGLCLTNRIGDGFKLLQIMKTCGVAPNTVVYNTLLHALCKN 218

Query: 187 KKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
            KV +A +L    +   + + +++N++ + +C  ++  +++ +L++    GL P++ T  
Sbjct: 219 GKVGRARSLMSEMK---EPNDVTFNILISAYCNEQKLIQSMVLLEKCFSLGLVPDVVTVT 275

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
            V++     G++ EA      ++ +  ++DVV   T+V G+  VG+++ A+  F  M   
Sbjct: 276 KVMEVLCNEGRVSEALEVLERVESKGGKVDVVACNTLVKGYCAVGKMRVAQRFFQEMERK 335

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G LP+V TYN +I   C    +++A+  F +M       N  T+N +IRGL   G  +  
Sbjct: 336 GYLPNVETYNLLIAGFCDVGMLDSALDTFNDMKTDAIRWNFATFNTLIRGLSVRGRTDDG 395

Query: 367 LEFVGRMKDDEC--EPNVQTYNILIRYFCDAGEIERGLELFEKMGS-------------G 411
           ++ +  M+D E      +  YN +I  F      E  LE   KM                
Sbjct: 396 IKILELMQDSETVHGARIDPYNSVIYGFYKENRWEDALEFLLKMEKLFPRAVDRSFKLIS 455

Query: 412 VC----LPNLDTY-----------NILISSMFVRKKSDDLLVAG--KLLIEMVDRGFMPR 454
           +C    + ++ T            ++++S   + + S +  +    +L+ +MV RG++PR
Sbjct: 456 LCEKGGMDDVKTAYDQMTGEGGVPSVIVSHCLIHRYSQEGYMEETLELINDMVTRGYLPR 515

Query: 455 KFTFNRVLNGL 465
             TFN V+ G 
Sbjct: 516 SSTFNAVIIGF 526



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 134/285 (47%), Gaps = 15/285 (5%)

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKAD 206
           Y + GK   A + F  M   G   ++ ++N ++   C    ++ A + F   +    + +
Sbjct: 316 YCAVGKMRVAQRFFQEMERKGYLPNVETYNLLIAGFCDVGMLDSALDTFNDMKTDAIRWN 375

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGL--NPNLTTYNIVLKGYFRAGQIEEAWRF 264
             ++N +  G  +  RT+  +++L+ M D        +  YN V+ G+++  + E+A  F
Sbjct: 376 FATFNTLIRGLSVRGRTDDGIKILELMQDSETVHGARIDPYNSVIYGFYKENRWEDALEF 435

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVV-----GEIKRARNVFDGMVNGGVLPSVATYNAMI 319
            L+M+K       +    +   F ++     G +   +  +D M   G +PSV   + +I
Sbjct: 436 LLKMEK-------LFPRAVDRSFKLISLCEKGGMDDVKTAYDQMTGEGGVPSVIVSHCLI 488

Query: 320 QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
               ++  +E  + +  +MV +GY+P S+T+N VI G C   ++   ++FV  M +  C 
Sbjct: 489 HRYSQEGYMEETLELINDMVTRGYLPRSSTFNAVIIGFCKEDKVMNGIKFVEDMAERGCV 548

Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
           P+ ++YN L+   C  G+I++   L   M     +P+   ++ L+
Sbjct: 549 PDRESYNPLLEELCVKGDIQKAWLLLSLMVEKSIVPDSSMWSSLM 593



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 103/238 (43%), Gaps = 40/238 (16%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE----HGCRQSLNSFNTILDLLC 184
           MK+ ++     TF  +       G+ D  +KI   M +    HG R  ++ +N+++    
Sbjct: 367 MKTDAIRWNFATFNTLIRGLSVRGRTDDGIKILELMQDSETVHGAR--IDPYNSVIYGFY 424

Query: 185 KEKKVEKAYNLF----KVF---------------RGKFKADVISYNVIAN---------G 216
           KE + E A        K+F               +G       +Y+ +            
Sbjct: 425 KENRWEDALEFLLKMEKLFPRAVDRSFKLISLCEKGGMDDVKTAYDQMTGEGGVPSVIVS 484

Query: 217 WCLVKRTNK------ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
            CL+ R ++       LE++ +MV RG  P  +T+N V+ G+ +  ++    +F  +M +
Sbjct: 485 HCLIHRYSQEGYMEETLELINDMVTRGYLPRSSTFNAVIIGFCKEDKVMNGIKFVEDMAE 544

Query: 271 RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
           R C  D  +Y  ++    V G+I++A  +   MV   ++P  + +++++  L +K ++
Sbjct: 545 RGCVPDRESYNPLLEELCVKGDIQKAWLLLSLMVEKSIVPDSSMWSSLMFCLSQKTAI 602


>gi|449491189|ref|XP_004158824.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80550,
           mitochondrial-like [Cucumis sativus]
          Length = 450

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 114/427 (26%), Positives = 200/427 (46%), Gaps = 14/427 (3%)

Query: 33  LPPAAADPAALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNI 92
           LPPA    +  A   +   D +  T        ++ P  V + +    N   ++  FFN 
Sbjct: 11  LPPATIFFSTKAISPIPEFDFKFNTSERRPTHTNFDPFTVREALDSYCNDWKRSYEFFNW 70

Query: 93  LSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMK-SLSLGPTQKTFAIIAERYVSA 151
           +     + H+  +++  +D+  +  ++   W L++RM+ S S  P   TF I+ +RY  A
Sbjct: 71  VESECKFDHTTETYNRMLDILGKFFEFDLSWVLINRMRQSPSASPDHATFRILFKRYALA 130

Query: 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVIS-- 209
                A+  +  + E   R    SF  ++D LC+ + V++A  L   F    K D  S  
Sbjct: 131 HLVSEAIAAYERLREFKLRDE-TSFCNLIDALCESRHVDEAQEL--CFGKNRKLDCDSST 187

Query: 210 --YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
             +N+I  GW  +   +K  +  +EM  +G+  +L +Y+I +    ++G+  +A + + E
Sbjct: 188 KIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKE 247

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           MKK+  ++DVV Y T++H  G+   +  A  VF  M   G  P+V T N +I++ C+   
Sbjct: 248 MKKKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFCENGR 307

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
            ++A ++ ++M+ +   PN  TY+   R L    E+   L    RM      P + TY +
Sbjct: 308 FKDAHMMLDQMLKRDCQPNVITYHCFFRSLEKPKEI---LVLFDRMIKYGVHPKMDTYVM 364

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           L+R F   G +     ++ KM    C PN   YN LI ++  +   D   +A K   EMV
Sbjct: 365 LLRKFGRWGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMID---MARKYDEEMV 421

Query: 448 DRGFMPR 454
            +G  P+
Sbjct: 422 AKGLSPK 428


>gi|297839881|ref|XP_002887822.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333663|gb|EFH64081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 407

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/415 (27%), Positives = 197/415 (47%), Gaps = 34/415 (8%)

Query: 49  TSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDH 108
           +S D +T+ + L C    W                 KAL FFN +     + H+  +F+ 
Sbjct: 3   SSYDQKTVCEALSCYINDWQ----------------KALEFFNWVEKESGFRHTTETFNR 46

Query: 109 AIDLAARLRDYRTVWTLVHRM----KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
            ID+  +  ++ T W L++RM    +SL   P   TF I+ +RYV+A     A+  +  +
Sbjct: 47  MIDILGKYFEFETCWALINRMIGNPESL---PNHVTFRIVFKRYVTAHLVQEAIDAYDKL 103

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF----KVFRGKFKADVISYNVIANGWCLV 220
            +   R    SF  ++D LC+ K V +A  L      +  G   ++   +N+I  GW  +
Sbjct: 104 DDFNLRDD-TSFYNLVDALCEHKHVVEAEELCFGKNVIAHGFSVSNTKIHNLILRGWSKL 162

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
               K  E   +M   G+  +L +Y+I +    ++G+  +A + + EMK R+ ++DVV Y
Sbjct: 163 GWWGKCKEYWDKMDTEGVPKDLFSYSIYMDIMCKSGKPWKAVKLYKEMKSRRIKLDVVAY 222

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
            T++   G    ++    VF  M   G  P+VAT+N +I++LC+   + +A  + +EM  
Sbjct: 223 NTVIRAIGASQGVEFGIRVFREMRERGCEPNVATHNTIIKLLCEDGRMRDAYRMLDEMPK 282

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           KG  P+S +Y  +   L    E+   L   GRM      P + TY +L+R F   G ++ 
Sbjct: 283 KGCQPDSISYMCLFSRLEKPSEI---LSLFGRMIRSGVRPKMDTYVMLMRKFERWGFLQP 339

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
            L +++ M      P+   YN +I ++  +   D   +A +   EM++RG  PR+
Sbjct: 340 VLYVWKTMKESGDTPDSAAYNAVIDALIQKGMLD---MAREYEEEMIERGLSPRR 391


>gi|224129154|ref|XP_002320514.1| predicted protein [Populus trichocarpa]
 gi|222861287|gb|EEE98829.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/310 (30%), Positives = 149/310 (48%), Gaps = 5/310 (1%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           SP  FD      A +  +R    +  RMK     PT ++        +   + D A+  +
Sbjct: 128 SPRVFDSLFKTYAHMNKFRNATDVFSRMKDYGFLPTVESCNAYLSSLLDFHRVDIALTFY 187

Query: 162 LSMHEHGCRQSLNS--FNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWC 218
             M    CR S NS  FN +L  LCK  K+EKA  + +         +V+SYN +  G C
Sbjct: 188 REMRR--CRISPNSYTFNLVLSALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIAGHC 245

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
                + A ++   M   GL PN+ T+N ++ G+ + G++ EA RFF EMK      + V
Sbjct: 246 NKGLLSIATKLKNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTV 305

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TY T+++G+G VG    A  V++ M+  GV   + TYNA+I  LCK+   + A  + +E+
Sbjct: 306 TYNTLINGYGQVGNSNMAGKVYEEMMRNGVKADILTYNALILGLCKEGKTKKAAFLVKEL 365

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
             +  +PN++TY+ +I G C     +RA +    M    C PN QT+ +L   F    + 
Sbjct: 366 DKENLVPNASTYSALISGQCARKNSDRAFQLYKSMVRSGCHPNEQTFKMLTSAFVKNEDF 425

Query: 399 ERGLELFEKM 408
           E    +   M
Sbjct: 426 EGAFNVLMDM 435



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 120/440 (27%), Positives = 198/440 (45%), Gaps = 36/440 (8%)

Query: 64  SLHWTPQLVDQIIKRLWNHALKALHFFN----------ILSYHPTYAH---SPSSFDHA- 109
           S H+TP  V+ I+ ++    + +L FFN           L  H    H     S F  A 
Sbjct: 37  STHFTPFRVNHILLKIQKDHVLSLEFFNSLKTLNPISLTLETHSIILHILTKKSKFKSAQ 96

Query: 110 -----------IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
                      IDL  +L D     TL+   +     P  + F  + + Y    K   A 
Sbjct: 97  SILRTLLASRSIDLPGKLFD-----TLLFSYRMCDSSP--RVFDSLFKTYAHMNKFRNAT 149

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGW 217
            +F  M ++G   ++ S N  L  L    +V+ A   ++  R  +   +  ++N++ +  
Sbjct: 150 DVFSRMKDYGFLPTVESCNAYLSSLLDFHRVDIALTFYREMRRCRISPNSYTFNLVLSAL 209

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           C   +  KA+EVL+EM   G+ PN+ +YN ++ G+   G +  A +    M K   E +V
Sbjct: 210 CKSGKLEKAVEVLREMESVGITPNVVSYNTLIAGHCNKGLLSIATKLKNLMGKNGLEPNV 269

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           VT+ +++HGF   G++  A   F  M    V P+  TYN +I    +  +   A  V+EE
Sbjct: 270 VTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTVTYNTLINGYGQVGNSNMAGKVYEE 329

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M+  G   +  TYN +I GLC  G+ ++A   V  +  +   PN  TY+ LI   C    
Sbjct: 330 MMRNGVKADILTYNALILGLCKEGKTKKAAFLVKELDKENLVPNASTYSALISGQCARKN 389

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
            +R  +L++ M    C PN  T+ +L S+ FV  K++D   A  +L++M  R       T
Sbjct: 390 SDRAFQLYKSMVRSGCHPNEQTFKMLTSA-FV--KNEDFEGAFNVLMDMFARSMASDSNT 446

Query: 458 FNRVLNGLLLIGNQGLAKEI 477
              + +GL   G + LA ++
Sbjct: 447 LLEIYDGLCQCGKENLAMKL 466



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 124/271 (45%), Gaps = 24/271 (8%)

Query: 236 RGLNP---NLTTYNIVL-----KGYFRAGQ-----------IEEAWRFF--LEMKKRKCE 274
           + LNP    L T++I+L     K  F++ Q           I+   + F  L    R C+
Sbjct: 67  KTLNPISLTLETHSIILHILTKKSKFKSAQSILRTLLASRSIDLPGKLFDTLLFSYRMCD 126

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
                + ++   +  + + + A +VF  M + G LP+V + NA +  L     V+ A+  
Sbjct: 127 SSPRVFDSLFKTYAHMNKFRNATDVFSRMKDYGFLPTVESCNAYLSSLLDFHRVDIALTF 186

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
           + EM      PNS T+N+V+  LC +G++E+A+E +  M+     PNV +YN LI   C+
Sbjct: 187 YREMRRCRISPNSYTFNLVLSALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIAGHCN 246

Query: 395 AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
            G +    +L   MG     PN+ T+N LI       K   L  A +   EM      P 
Sbjct: 247 KGLLSIATKLKNLMGKNGLEPNVVTFNSLIHGFC---KEGKLHEANRFFSEMKVMNVTPN 303

Query: 455 KFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
             T+N ++NG   +GN  +A ++     R G
Sbjct: 304 TVTYNTLINGYGQVGNSNMAGKVYEEMMRNG 334



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 128/276 (46%), Gaps = 3/276 (1%)

Query: 102 SPSSFDHAIDLAARLRDYR--TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           SP+S+   + L+A  +  +      ++  M+S+ + P   ++  +   + + G    A K
Sbjct: 196 SPNSYTFNLVLSALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIAGHCNKGLLSIATK 255

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWC 218
           +   M ++G   ++ +FN+++   CKE K+ +A   F   +      + ++YN + NG+ 
Sbjct: 256 LKNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTVTYNTLINGYG 315

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
            V  +N A +V +EM+  G+  ++ TYN ++ G  + G+ ++A     E+ K     +  
Sbjct: 316 QVGNSNMAGKVYEEMMRNGVKADILTYNALILGLCKEGKTKKAAFLVKELDKENLVPNAS 375

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TY+ ++ G        RA  ++  MV  G  P+  T+  +     K +  E A  V  +M
Sbjct: 376 TYSALISGQCARKNSDRAFQLYKSMVRSGCHPNEQTFKMLTSAFVKNEDFEGAFNVLMDM 435

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
             +    +S T   +  GLC  G+   A++    M+
Sbjct: 436 FARSMASDSNTLLEIYDGLCQCGKENLAMKLCHEME 471



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 74/178 (41%), Gaps = 20/178 (11%)

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           ++ T++ ++ +L KK   ++A  +   ++               R +   G++   L F 
Sbjct: 75  TLETHSIILHILTKKSKFKSAQSILRTLLAS-------------RSIDLPGKLFDTLLFS 121

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
            RM    C+ + + ++ L + +    +     ++F +M     LP +++ N  +SS+   
Sbjct: 122 YRM----CDSSPRVFDSLFKTYAHMNKFRNATDVFSRMKDYGFLPTVESCNAYLSSLLDF 177

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            + D   +A     EM      P  +TFN VL+ L   G    A E+LR     G  P
Sbjct: 178 HRVD---IALTFYREMRRCRISPNSYTFNLVLSALCKSGKLEKAVEVLREMESVGITP 232


>gi|357140697|ref|XP_003571900.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Brachypodium distachyon]
          Length = 571

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 182/369 (49%), Gaps = 7/369 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI---F 161
           +F+  I    +    R    +   +++  L P+  T+  I + Y   G+A R   +    
Sbjct: 187 TFNIVISGLCKTGQLRKAGDVAKDIRAWGLAPSVVTYNTIIDGYCKRGRAGRMYHVDALL 246

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLV 220
             M E G   +  +FN +++  CK+     A  +F+  + +   A V++Y+ +  G C  
Sbjct: 247 KEMVEAGISPNEVTFNVLVNGYCKDSNTAAAVRVFEEMKQQGIAASVVTYSALVWGLCSE 306

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
            +  + ++++ EM D GL PNL T N VL G+ + G + +A  +   M+++  + +VVTY
Sbjct: 307 GKVEEGVKLVDEMKDLGLVPNLATLNSVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTY 366

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
           T +V G+  + ++K A  V + M   GV P+   YN +I    +     +   + +EM  
Sbjct: 367 TILVDGYRRLDKMKDALAVKEAMSGKGVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMRM 426

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           KG   +  TYNV+I  LC  GE+ +A++ +  M     EP   TYN +I  +C+ G I+ 
Sbjct: 427 KGVRADIVTYNVLIGALCVKGEVRKAVKLLDEMLMVGLEPVHLTYNTIINGYCEKGNIKS 486

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
             E+  +M  G    N+ TYN+ I  +    K ++     +LL EM+++G +P   T++ 
Sbjct: 487 AYEIRTRMEKGKKRANVVTYNVFIKCLCRMGKMEE---TNELLNEMLEKGLVPNGVTYDT 543

Query: 461 VLNGLLLIG 469
           +  G++  G
Sbjct: 544 IKEGMMEKG 552



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 103/333 (30%), Positives = 167/333 (50%), Gaps = 7/333 (2%)

Query: 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADV 207
           V+A + D A + F +         L +FN ++  LCK  ++ KA ++ K  R       V
Sbjct: 161 VAAERVDLAERAFKAALRRRVSPDLFTFNIVISGLCKTGQLRKAGDVAKDIRAWGLAPSV 220

Query: 208 ISYNVIANGWCLVKRTNKALEV---LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
           ++YN I +G+C   R  +   V   LKEMV+ G++PN  T+N+++ GY +      A R 
Sbjct: 221 VTYNTIIDGYCKRGRAGRMYHVDALLKEMVEAGISPNEVTFNVLVNGYCKDSNTAAAVRV 280

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
           F EMK++     VVTY+ +V G    G+++    + D M + G++P++AT N+++   CK
Sbjct: 281 FEEMKQQGIAASVVTYSALVWGLCSEGKVEEGVKLVDEMKDLGLVPNLATLNSVLNGFCK 340

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
           K  + +A    + M  K   PN  TY +++ G     +M+ AL     M      PN + 
Sbjct: 341 KGMMTDAEGWIDSMEQKNVKPNVVTYTILVDGYRRLDKMKDALAVKEAMSGKGVRPNARI 400

Query: 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLI 444
           YN LI  F   G+      L ++M       ++ TYN+LI ++ V+    ++  A KLL 
Sbjct: 401 YNCLIAGFTRNGDWRSVSGLLDEMRMKGVRADIVTYNVLIGALCVK---GEVRKAVKLLD 457

Query: 445 EMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
           EM+  G  P   T+N ++NG    GN   A EI
Sbjct: 458 EMLMVGLEPVHLTYNTIINGYCEKGNIKSAYEI 490



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 106/228 (46%), Gaps = 6/228 (2%)

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           P+  + N +L     A +++ A R F    +R+   D+ T+  ++ G    G++++A +V
Sbjct: 148 PSAFSVNRLLSALVAAERVDLAERAFKAALRRRVSPDLFTFNIVISGLCKTGQLRKAGDV 207

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV---FEEMVGKGYMPNSTTYNVVIRG 356
              +   G+ PSV TYN +I   CK+        V    +EMV  G  PN  T+NV++ G
Sbjct: 208 AKDIRAWGLAPSVVTYNTIIDGYCKRGRAGRMYHVDALLKEMVEAGISPNEVTFNVLVNG 267

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
            C       A+     MK      +V TY+ L+   C  G++E G++L ++M     +PN
Sbjct: 268 YCKDSNTAAAVRVFEEMKQQGIAASVVTYSALVWGLCSEGKVEEGVKLVDEMKDLGLVPN 327

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           L T N +++    +    D   A   +  M  +   P   T+  +++G
Sbjct: 328 LATLNSVLNGFCKKGMMTD---AEGWIDSMEQKNVKPNVVTYTILVDG 372



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           ERA +   R +     P++ T+NI+I   C  G++ +  ++ + + +    P++ TYN +
Sbjct: 170 ERAFKAALRRR---VSPDLFTFNIVISGLCKTGQLRKAGDVAKDIRAWGLAPSVVTYNTI 226

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I     R ++  +     LL EMV+ G  P + TFN ++NG     N   A  +     +
Sbjct: 227 IDGYCKRGRAGRMYHVDALLKEMVEAGISPNEVTFNVLVNGYCKDSNTAAAVRVFEEMKQ 286

Query: 484 CG 485
            G
Sbjct: 287 QG 288


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 173/377 (45%), Gaps = 39/377 (10%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++  M S         F  I        + + A++    M     R +     T++  LC
Sbjct: 408 ILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLC 467

Query: 185 KEKKVEKAYNL-FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           KE K   A  L F++    F A++++ N + +G C      +A+ +LK+M++RG   +  
Sbjct: 468 KEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKI 527

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN ++ G  + G++EE ++   EM K+  E D  TY  ++HG   +G++  A N+++  
Sbjct: 528 TYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNEC 587

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE-------------------------- 337
            +  ++P+V TY  MI   CK D +E    +F E                          
Sbjct: 588 KSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNT 647

Query: 338 ---------MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
                    M  KG  P + TY+ +I G+C+ G ME A   +  M+ +   PNV  Y  L
Sbjct: 648 VEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTAL 707

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           I  +C  G++++ + + ++M S    PN  TY ++I       KS D+  A KLL EMV 
Sbjct: 708 IGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGY---SKSGDMKTAAKLLHEMVG 764

Query: 449 RGFMPRKFTFNRVLNGL 465
           +G +P   T+N + NG 
Sbjct: 765 KGIVPDTVTYNVLTNGF 781



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 176/352 (50%), Gaps = 8/352 (2%)

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
           ++ W      + +S  P    F+     +   GK + A+++F  M + G   ++ ++N +
Sbjct: 230 KSYWVFETMRQGVS--PDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNL 287

Query: 180 LDLLCKEKKVEKAYNL-FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           +  LCK   +++A+    K+ +    A +I+Y+V+ NG   +++ N+A  VLKE +++G 
Sbjct: 288 IHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGF 347

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
            PN   YN ++ GY + G + +A R   +M  +    + VT  +I+ GF  +G++++A  
Sbjct: 348 TPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAEC 407

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
           + + M++ G   +   +  +I  LC     E+A+    EM+ +   PN      ++ GLC
Sbjct: 408 ILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLC 467

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGVCLPNL 417
             G+   A+E   R+ +     N+ T N LI   C  G ++  + L +KM   G  L  +
Sbjct: 468 KEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKI 527

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
            TYN LIS      K ++     KL  EMV +G  P  FT+N +++G+  IG
Sbjct: 528 -TYNTLISGCCKEGKVEE---GFKLRGEMVKQGIEPDTFTYNLLIHGMCRIG 575



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 165/316 (52%), Gaps = 6/316 (1%)

Query: 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL-FKVFRGKFKADVIS 209
            G    AV++   M E G      ++NT++   CKE KVE+ + L  ++ +   + D  +
Sbjct: 504 TGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFT 563

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           YN++ +G C + + ++A+ +  E   R L PN+ TY +++ GY +A +IEE  + F E+ 
Sbjct: 564 YNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELL 623

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
            +  E++ V Y T++  +   G    A  + D M + G+ P+ ATY+++I  +C    +E
Sbjct: 624 TQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRME 683

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
           +A  + +EM  +G +PN   Y  +I G C  G+M++ +  +  M   +  PN  TY ++I
Sbjct: 684 DAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMI 743

Query: 390 RYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
             +  +G+++   +L  +M G G+ +P+  TYN+L +      K ++     K+   M  
Sbjct: 744 DGYSKSGDMKTAAKLLHEMVGKGI-VPDTVTYNVLTNGFCKEGKIEE---GFKICDYMSQ 799

Query: 449 RGFMPRKFTFNRVLNG 464
            G    + T+  +++G
Sbjct: 800 EGLPLDEITYTTLVHG 815



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 178/401 (44%), Gaps = 39/401 (9%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           F  AI+   +         L   M+ L + P   T+  +       G  D A +    M 
Sbjct: 249 FSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMV 308

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTN 224
           + G   +L +++ +++ L K +K  +A ++ K      F  + + YN + +G+C +    
Sbjct: 309 KDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLG 368

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
            AL +  +MV +G+NPN  T N +++G+ + GQ+E+A     EM  R   I+   +TTI+
Sbjct: 369 DALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTII 428

Query: 285 H-----------------------------------GFGVVGEIKRARNVFDGMVNGGVL 309
           H                                   G    G+   A  ++  ++  G  
Sbjct: 429 HWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFG 488

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
            ++ T NA+I  LCK  +++ A+ + ++M+ +G++ +  TYN +I G C  G++E   + 
Sbjct: 489 ANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKL 548

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
            G M     EP+  TYN+LI   C  G+++  + L+ +  S   +PN+ TY ++I     
Sbjct: 549 RGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYC- 607

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
             K+D +    KL  E++ +        +N ++      GN
Sbjct: 608 --KADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGN 646



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 126/520 (24%), Positives = 221/520 (42%), Gaps = 53/520 (10%)

Query: 3   ALLRKPPKNHLHFFC-IYRGLSPLTTTSP---APLP----PAAADPAALASLILTSTDPR 54
            LL KP       FC I R L+ +T+ +P   +PLP    P ++D A L S+    ++P 
Sbjct: 6   TLLPKPTP----IFCPIARPLTCVTSAAPHPPSPLPSQNQPPSSDHALLKSVTSILSNPS 61

Query: 55  TLTQTLHCPSL--HWTPQLVDQI---IKRLWNHALKALHFFNILSYHPTYAHSPSSF--- 106
               +  C  L  H +P   D +   ++R  N    AL+FF   S    +  +  S+   
Sbjct: 62  L--DSTQCKQLIPHLSPHQFDSVFFSVRRNVNPK-TALNFFYFASDSCGFRFTLRSYCVL 118

Query: 107 ----------DHAIDLAARLRDYR-TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKAD 155
                       A  L  RL D +  V     + + + +         + E  V+    D
Sbjct: 119 MRSLIVSGFVSPARLLLIRLIDRKLPVLFGDPKNRHIEIASAMADLNEVGESGVAVAAVD 178

Query: 156 ----------------RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
                            A+ +F  +   G   ++ +   +L  L K  ++EK+Y +F+  
Sbjct: 179 LLIHVYCTQFRNVGFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETM 238

Query: 200 RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
           R     DV  ++   N +C   +   A+++  +M   G++PN+ TYN ++ G  + G ++
Sbjct: 239 RQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLD 298

Query: 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319
           EA+RF  +M K      ++TY+ +++G   + +   A +V    +  G  P+   YN +I
Sbjct: 299 EAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLI 358

Query: 320 QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
              CK  ++ +A+ +  +MV KG  PNS T N +I+G C  G+ME+A   +  M      
Sbjct: 359 DGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFS 418

Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA 439
            N   +  +I + C     E  L    +M      PN      L+  +    K  D   A
Sbjct: 419 INPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSD---A 475

Query: 440 GKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
            +L   ++++GF     T N +++GL   GN   A  +L+
Sbjct: 476 VELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLK 515



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 90/177 (50%), Gaps = 3/177 (1%)

Query: 114 ARLRDYRTV--WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ 171
           A  R+  TV  + L   M+S  + PT  T++ +     + G+ + A  +   M + G   
Sbjct: 640 AYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLP 699

Query: 172 SLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVL 230
           ++  +  ++   CK  +++K  N+ +         + I+Y V+ +G+        A ++L
Sbjct: 700 NVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLL 759

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
            EMV +G+ P+  TYN++  G+ + G+IEE ++    M +    +D +TYTT+VHG+
Sbjct: 760 HEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLDEITYTTLVHGW 816


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 169/331 (51%), Gaps = 4/331 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   +++II +     GK    +K+   M   GC   +  +NTI+D LCK++ V +A ++
Sbjct: 194 PNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHI 253

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F   +G      V++Y  + +G   + R  +A  +L EM    + P+L  +++++    +
Sbjct: 254 FCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCK 313

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G++ EA      M +   E DV TY T+++G+ +  E+  AR VF+ M++ G +P V +
Sbjct: 314 EGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFS 373

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           ++ ++   CK   ++ A  +F+EM  +G +P++ +YN +I GLC       A E    M 
Sbjct: 374 FSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMH 433

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
            +   PN+ TY+IL+      G +++ + LF  M +    P+L TYNI+I  M    K  
Sbjct: 434 SNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFK 493

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           D   A +L  E+  +G  P  +     ++G+
Sbjct: 494 D---ARELFAELSVKGLQPNNWVCTPTIDGV 521



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 198/412 (48%), Gaps = 8/412 (1%)

Query: 78  RLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPT 137
           R  N AL A  F ++++ +P    S   F        R++ Y+TV +L  +M+   +   
Sbjct: 70  RNINDALSA--FNHMVNTNPL--PSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHD 125

Query: 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK 197
             +  I+   +      D    +   + + G   ++ +F+T+++  C E K+ +A  LF 
Sbjct: 126 VLSLTILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFD 185

Query: 198 VFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256
           V   + +K +V SY++I  G C V +T + +++L+ M   G  P++  YN ++    +  
Sbjct: 186 VMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDR 245

Query: 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
            + EA   F +MK       VVTYT+++HG   +G  K A  + + M  G ++P +  ++
Sbjct: 246 LVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFS 305

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
            +I ++CK+  V  A ++ + M   G  P+  TYN ++ G C   E+  A +    M   
Sbjct: 306 VLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISK 365

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
              P+V +++IL+  +C A  I+   +LF++M     +P+  +YN LIS +   ++    
Sbjct: 366 GRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRP--- 422

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           L A +L  +M   G+ P   T++ +L+ L   G    A  + R     G  P
Sbjct: 423 LEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKP 474



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 148/308 (48%), Gaps = 4/308 (1%)

Query: 112 LAARLRDYRTVWTLVH---RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG 168
           +  RL   R V   VH   +MK   + PT  T+  +     + G+   A  +   M    
Sbjct: 237 IVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGN 296

Query: 169 CRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKAL 227
               L +F+ ++D++CKE +V +A  + K       + DV +YN + NG+CL     +A 
Sbjct: 297 IMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEAR 356

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
           +V + M+ +G  P++ +++I++ GY +A +I+EA + F EM  R    D V+Y T++ G 
Sbjct: 357 KVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGL 416

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
                   A  +F  M + G  P++ TY+ ++  L K+  ++ A+ +F  M   G  P+ 
Sbjct: 417 CQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDL 476

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
            TYN++I G+C  G+ + A E    +     +PN       I   C  G ++   + F +
Sbjct: 477 VTYNIMIDGMCKYGKFKDARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQ 536

Query: 408 MGSGVCLP 415
           M    C P
Sbjct: 537 MEKDDCSP 544



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 136/287 (47%), Gaps = 3/287 (1%)

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           ++ +  + +    +K     + + K+M   G++ ++ +  I++  + R   ++  +    
Sbjct: 91  IVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTILINCFCRLCHVDYGFSVLG 150

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           ++ K   E +V+T++T+++GF + G+I RA  +FD MV  G  P+V +Y+ +I+ LC+  
Sbjct: 151 KIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVG 210

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
                I + E M   G  P+   YN ++  LC    +  A+    +MK     P V TY 
Sbjct: 211 KTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYT 270

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            LI    + G  +    L  +M  G  +P+L  +++LI  M    K  ++  A  +L  M
Sbjct: 271 SLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMC---KEGEVSEARVILKTM 327

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQFKL 493
            + G  P   T+N ++NG  L      A+++  +    GR+P  F  
Sbjct: 328 TEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSF 374



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 90/185 (48%), Gaps = 5/185 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   +F+I+   Y  A + D A ++F  M   G      S+NT++  LC+ ++  +A  L
Sbjct: 369 PDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEEL 428

Query: 196 FK-VFRGKFKADVISYNVIANGWCLVKRT--NKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
           FK +    +  ++++Y+++ +  CL K+   ++A+ + + M + GL P+L TYNI++ G 
Sbjct: 429 FKDMHSNGYPPNLVTYSILLD--CLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGM 486

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
            + G+ ++A   F E+  +  + +    T  + G    G +  A   F  M      P+ 
Sbjct: 487 CKYGKFKDARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQMEKDDCSPAQ 546

Query: 313 ATYNA 317
              N 
Sbjct: 547 GCING 551


>gi|224127136|ref|XP_002329409.1| predicted protein [Populus trichocarpa]
 gi|222870459|gb|EEF07590.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 126/522 (24%), Positives = 222/522 (42%), Gaps = 47/522 (9%)

Query: 8   PPKNHLHFFCIYRGLSPLTTTSPAPLPPAAADPAALASLILTSTDPRTLTQTLHCPS--L 65
           PP   +  F     LS + +  P  L P+      ++ L+    D  +    L C    +
Sbjct: 2   PPPEWIEPF---NDLSDIASKPPQDLKPSPWVHQIMSLLLDGPVDMESRLD-LFCNKFLI 57

Query: 66  HWTPQLVDQIIK--RLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVW 123
             +P  V  ++K   L      AL FF        Y H+   +  +ID+ A   D   V 
Sbjct: 58  KLSPNFVSFVLKSMELQKRPDLALKFFTWAGKQKKYTHNLQCYVSSIDVLAINGDLDNVK 117

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           ++  + + +           + + + S G  +  + ++  M E+G   SL ++N +L+ L
Sbjct: 118 SVFCKFRGMGFLMNVSAANSLIKSFGSLGMVEELLWVWRGMKENGVEPSLFTYNFLLNGL 177

Query: 184 CKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
                +E A  + +V   GK   DV++YN +  G+C V +T KA E  ++M  R + P+ 
Sbjct: 178 VNSVFIESAERVLEVMENGKIGPDVVTYNTMIKGYCQVGKTQKAFEKFRDMELRNVAPDK 237

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TY  +++  +  G  +     + EM +   EI    Y+ ++ G    G+      VF+ 
Sbjct: 238 ITYMTLIQACYAEGDFDLCLSLYHEMDENGLEIPPHAYSLVIGGLCKEGKCVEGYAVFEK 297

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M+  G   +VA Y A+I    K  ++  A+L+FE M  +G  P+  TY VV+  +C +G 
Sbjct: 298 MIQKGCKVNVAIYTALIDSNAKCGNMGEAMLLFERMKKEGLEPDVVTYGVVVNCMCKSGR 357

Query: 363 MERALEFV-------------------------GRMKDDE----------CEPNVQTYNI 387
           ++ A+E++                         GR+ + E          C P+   YN 
Sbjct: 358 LDEAMEYLEFCRVNGVAVNAMLYSSLIDGLGKAGRVHEAEKLFEEMVKKGCPPDSYCYNA 417

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           LI      G+ +  L  F++M    C   + TY I+I+ +F   K+++ L   K+   M+
Sbjct: 418 LIDALAKCGKTDEALAFFKRMEDEGCDQTVYTYTIMINGLFREHKNEEAL---KMWDMMI 474

Query: 448 DRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPR 489
           D+G  P    F  +  GL L G    A ++L   +  G +P 
Sbjct: 475 DKGITPTAAAFRALSIGLCLSGKVARACKLLDELAPMGVIPE 516



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 141/337 (41%), Gaps = 45/337 (13%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177
           D+    +L H M    L      ++++       GK      +F  M + GC+ ++  + 
Sbjct: 252 DFDLCLSLYHEMDENGLEIPPHAYSLVIGGLCKEGKCVEGYAVFEKMIQKGCKVNVAIYT 311

Query: 178 TILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLK----- 231
            ++D   K   + +A  LF+  + +  + DV++Y V+ N  C   R ++A+E L+     
Sbjct: 312 ALIDSNAKCGNMGEAMLLFERMKKEGLEPDVVTYGVVVNCMCKSGRLDEAMEYLEFCRVN 371

Query: 232 ------------------------------EMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
                                         EMV +G  P+   YN ++    + G+ +EA
Sbjct: 372 GVAVNAMLYSSLIDGLGKAGRVHEAEKLFEEMVKKGCPPDSYCYNALIDALAKCGKTDEA 431

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
             FF  M+   C+  V TYT +++G     + + A  ++D M++ G+ P+ A + A+   
Sbjct: 432 LAFFKRMEDEGCDQTVYTYTIMINGLFREHKNEEALKMWDMMIDKGITPTAAAFRALSIG 491

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           LC    V  A  + +E+   G +P  T +  ++  LC  G ++ A +      D   E  
Sbjct: 492 LCLSGKVARACKLLDELAPMGVIP-ETAFEDMLNVLCKAGRIKEACKLADGFVDRGREIP 550

Query: 382 VQTYNILIRYFCDAGEIERGLEL--------FEKMGS 410
            +   +LI     AG  +  L+L        +++MGS
Sbjct: 551 GRVRTVLINALRKAGNADLALKLMHSKIGIGYDRMGS 587


>gi|357512797|ref|XP_003626687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355520709|gb|AET01163.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 501

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 168/347 (48%), Gaps = 7/347 (2%)

Query: 96  HPTYAHSPSSFDHAIDLAARLRDYR-TVWTLVHR----MKSLSLGPTQKTFAIIAERYVS 150
           HP+++   S++   +    +  D + +  +L+H+    M S  + P + T  +      +
Sbjct: 116 HPSFSPDKSTYHILLTHCCKSTDSKYSTLSLIHQTLNLMVSDGISPDKGTVDLAVRSLCT 175

Query: 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF--KADVI 208
           A + D AV++   +    C   + S+N ++  LCK + +   Y      R KF  K +++
Sbjct: 176 ADRVDDAVELIKELSSKHCSPDIYSYNFLVKNLCKSRTLSLVYAFIDEMRTKFDVKPNLV 235

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           +Y ++ +  C  K   +A  ++  + + G  P+   YN ++KGY    +  EA   +  M
Sbjct: 236 TYTILIDNVCNTKNLREATRLVDILEEEGFKPDCFLYNTIMKGYCMLSRGSEAIEVYNRM 295

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
           K++  E D++TY T++ G    G +  A+ +   M   G  P   TY +++  +C+K   
Sbjct: 296 KEKGVEPDLITYNTLIFGLSKSGRVSEAKKLLRVMAEKGHFPDEVTYTSLMNGMCRKGET 355

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
             A+ + EEM  KG  PN+ TYN ++ GLC +   ++A+E  G MK D  + ++ +Y   
Sbjct: 356 LAALALLEEMEMKGCSPNTCTYNTLLHGLCKSRMFDKAMELYGAMKSDGLKLDMASYATF 415

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
           +R  C  G +    E+F+       L ++  Y+ L S++   KK+ +
Sbjct: 416 VRALCSVGRVADAYEVFDYAVESKSLSDVAAYSTLESTLKWFKKAKE 462



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 136/309 (44%), Gaps = 32/309 (10%)

Query: 171 QSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKAL--- 227
           QS  S +TI D +   + + K +         F  D  +Y+++    C  K T+      
Sbjct: 94  QSYASISTINDSIAFLRHMTKTH-------PSFSPDKSTYHILLTHCC--KSTDSKYSTL 144

Query: 228 ----EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
               + L  MV  G++P+  T ++ ++    A ++++A     E+  + C  D+ +Y  +
Sbjct: 145 SLIHQTLNLMVSDGISPDKGTVDLAVRSLCTADRVDDAVELIKELSSKHCSPDIYSYNFL 204

Query: 284 VHGFG-------VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE 336
           V           V   I   R  FD      V P++ TY  +I  +C   ++  A  + +
Sbjct: 205 VKNLCKSRTLSLVYAFIDEMRTKFD------VKPNLVTYTILIDNVCNTKNLREATRLVD 258

Query: 337 EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
            +  +G+ P+   YN +++G C       A+E   RMK+   EP++ TYN LI     +G
Sbjct: 259 ILEEEGFKPDCFLYNTIMKGYCMLSRGSEAIEVYNRMKEKGVEPDLITYNTLIFGLSKSG 318

Query: 397 EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
            +    +L   M      P+  TY  L++ M  RK   + L A  LL EM  +G  P   
Sbjct: 319 RVSEAKKLLRVMAEKGHFPDEVTYTSLMNGM-CRK--GETLAALALLEEMEMKGCSPNTC 375

Query: 457 TFNRVLNGL 465
           T+N +L+GL
Sbjct: 376 TYNTLLHGL 384



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/305 (21%), Positives = 131/305 (42%), Gaps = 13/305 (4%)

Query: 185 KEKKVEKAYNLFKVFRGKFKADVIS--YNVIANGWCLVKRTNKALEVLKEMVDR--GLNP 240
           K   +++A ++F  F     A + S  +N +   +  +   N ++  L+ M       +P
Sbjct: 62  KSPNLQEAKSIFNSFVNSSNAPIDSRFHNSLLQSYASISTINDSIAFLRHMTKTHPSFSP 121

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLE-----MKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
           + +TY+I+L    ++   + +    +      M       D  T    V        +  
Sbjct: 122 DKSTYHILLTHCCKSTDSKYSTLSLIHQTLNLMVSDGISPDKGTVDLAVRSLCTADRVDD 181

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK-GYMPNSTTYNVVI 354
           A  +   + +    P + +YN +++ LCK  ++       +EM  K    PN  TY ++I
Sbjct: 182 AVELIKELSSKHCSPDIYSYNFLVKNLCKSRTLSLVYAFIDEMRTKFDVKPNLVTYTILI 241

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
             +C+T  +  A   V  ++++  +P+   YN +++ +C        +E++ +M      
Sbjct: 242 DNVCNTKNLREATRLVDILEEEGFKPDCFLYNTIMKGYCMLSRGSEAIEVYNRMKEKGVE 301

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           P+L TYN LI   F   KS  +  A KLL  M ++G  P + T+  ++NG+   G    A
Sbjct: 302 PDLITYNTLI---FGLSKSGRVSEAKKLLRVMAEKGHFPDEVTYTSLMNGMCRKGETLAA 358

Query: 475 KEILR 479
             +L 
Sbjct: 359 LALLE 363


>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
 gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
          Length = 382

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/360 (28%), Positives = 173/360 (48%), Gaps = 38/360 (10%)

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR--GKFKADVISYNVIANGWCLVK 221
           M   G + +  + + IL  LC+  +V +A   F         + DV+SY  + NG C + 
Sbjct: 1   MDVEGMQCNDRTTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLG 60

Query: 222 RTNKALEVLKEMVDRG-LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
           R + A ++ ++MV  G   PN  TYN ++ G  +  +++ A     E +KR    DVVTY
Sbjct: 61  RVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTY 120

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
            T++     +G +  A   F  M   G +P++ ++NA+I  LC+   + +A+ VF EM+ 
Sbjct: 121 NTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMID 180

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           + + PN  TY+VVI GLC + +++ A + + RM  + C P++  Y  L+  F  AG ++ 
Sbjct: 181 RDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDS 240

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL------LVA--------------- 439
            L L  +M S  C+P++ TY ++I  +    + DD       LVA               
Sbjct: 241 ALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIG 300

Query: 440 -----------GKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
                      GK++ EM  R   P   T+N ++ GL ++     A  + R  S CG +P
Sbjct: 301 GYCRASRVDEGGKVMREMACR---PNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVP 357



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 155/355 (43%), Gaps = 43/355 (12%)

Query: 109 AIDLAARLRDYRTVWTLVHRMKSLSLG---PTQKTFAIIAERYVSAGKADRAVKIFLSM- 164
           +I L    R  R    L H   SL L    P   ++  +       G+ D A  +F  M 
Sbjct: 14  SIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMV 73

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYN------------ 211
              GCR +  ++N ++D LCK+ +++ A  +    R + F  DV++YN            
Sbjct: 74  AAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRV 133

Query: 212 -----------------------VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
                                   I  G C  +R   ALEV  EM+DR  +PNL TY++V
Sbjct: 134 DEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVV 193

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           + G  ++ Q++EA +    M    C  D+V YT +V GF   G +  A  +   MV+ G 
Sbjct: 194 IDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGC 253

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
           +P V TY  +I  LCK   V++A  +F E+V     PN  TY+ +I G C    ++   +
Sbjct: 254 IPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGK 313

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
               M++  C PNV TYN +I         E    +F +M     +P+  TY  L
Sbjct: 314 V---MREMACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGL 365



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 126/268 (47%), Gaps = 4/268 (1%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            ++   +     P   T+  +       G+ D A+  F  M E G   +L SFN I+  L
Sbjct: 103 AVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGL 162

Query: 184 CKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           C+ +++  A  +F ++    F  ++++Y+V+ +G C   + ++A ++L  MV  G  P+L
Sbjct: 163 CRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDL 222

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
             Y  ++ G+  AG+++ A      M  + C  DVVTYT ++     VG +  A  +F  
Sbjct: 223 VAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRE 282

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           +V     P+V TY+A+I   C+   V+    V  EM  +   PN  TYN +I GL     
Sbjct: 283 LVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREMACR---PNVVTYNTMIWGLSMVDR 339

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIR 390
            E A      M +    P+ +TY  L R
Sbjct: 340 NEEAYGMFREMSECGFVPDARTYRGLKR 367



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 93/199 (46%), Gaps = 11/199 (5%)

Query: 86  ALHFFNIL---SYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           AL  FN +    +HP       ++   ID   +         L+ RM S    P    + 
Sbjct: 171 ALEVFNEMIDRDFHPNLV----TYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYT 226

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRG 201
            +   + +AG+ D A+ +   M   GC   + ++  ++D LCK  +V+ A+ +F+ +   
Sbjct: 227 PLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVAN 286

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
           K   +V++Y+ +  G+C   R ++  +V++EM  R   PN+ TYN ++ G     + EEA
Sbjct: 287 KCSPNVVTYSALIGGYCRASRVDEGGKVMREMACR---PNVVTYNTMIWGLSMVDRNEEA 343

Query: 262 WRFFLEMKKRKCEIDVVTY 280
           +  F EM +     D  TY
Sbjct: 344 YGMFREMSECGFVPDARTY 362


>gi|125539409|gb|EAY85804.1| hypothetical protein OsI_07165 [Oryza sativa Indica Group]
          Length = 649

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/391 (26%), Positives = 189/391 (48%), Gaps = 16/391 (4%)

Query: 82  HALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTF 141
           H  +AL   N +   P      ++    + +A R  D   +  L+  M      P + TF
Sbjct: 275 HVDQALDLLNTMLCKPNTVCYNAAL-KGLCIAERWED---IGELMAEMVRKGCSPNEATF 330

Query: 142 AIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG 201
           +++          D AV++   M ++GC     ++N I++ L +  +V+ A  L      
Sbjct: 331 SMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRLLNSM-- 388

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
             K D + +N +  G+C  +R + A E++ +M          T+NI++    + G +  A
Sbjct: 389 VCKPDALGFNAVLKGFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDTLCQNGLVNYA 448

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
            + F +M + +C  D+VTY+++++GF   G ++ A  +F  M      P + +YNA+++ 
Sbjct: 449 TQVFEQMPRYRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRSM---PCKPDIFSYNAVLKG 505

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           LC+    E+A  +  EMVGK   PN  T+N++I  LC  G ++RA+E + +M +    P+
Sbjct: 506 LCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPD 565

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
           + TYN LI  F + G ++  L+L   M    C P+  +YN  +  +   ++  D   A +
Sbjct: 566 IFTYNALINGFSEQGRLDDALKLLSTMS---CKPDAISYNSTLKGLCRAERWQD---AEE 619

Query: 442 LLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
           L+ EM+     P + TF +  N LL+    G
Sbjct: 620 LVAEMLRNKCTPNEVTF-KYANHLLMPNRAG 649



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 169/356 (47%), Gaps = 11/356 (3%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P + TFA     +   G  DRAV++   M  +GC   +  ++T+++   ++  V++A +L
Sbjct: 223 PNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDL 282

Query: 196 FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
                   K + + YN    G C+ +R     E++ EMV +G +PN  T+++++    + 
Sbjct: 283 LNTM--LCKPNTVCYNAALKGLCIAERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQN 340

Query: 256 GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
             ++ A     +M+K  CE D V Y  I++     G +  A  + + MV     P    +
Sbjct: 341 NLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRLLNSMV---CKPDALGF 397

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           NA+++  C+ +   +A  +  +M          T+N++I  LC  G +  A +   +M  
Sbjct: 398 NAVLKGFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDTLCQNGLVNYATQVFEQMPR 457

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
             C P++ TY+ L+  F + G +E  ++LF  M    C P++ +YN ++  +    + +D
Sbjct: 458 YRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRSMP---CKPDIFSYNAVLKGLCRAARWED 514

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
              AG+L+ EMV +   P + TFN ++N L   G    A E+L      G  P  F
Sbjct: 515 ---AGELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIF 567



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 142/291 (48%), Gaps = 12/291 (4%)

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           S NT++   C++ ++  A  +    R    A+V++Y  + +G+C   R + AL ++  M 
Sbjct: 126 SHNTLVAGYCRDGRLADAERVLGAARATGAANVVTYTALIDGYCRSGRLDDALRLIASM- 184

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
              + P+  TYN VLKG   A + EEA     EM + +C  + VT+ T +  F   G + 
Sbjct: 185 --PVAPDTYTYNTVLKGLCIAKKWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLD 242

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
           RA  + D M   G  P V  Y+ +I    ++  V+ A+ +   M+ K   PN+  YN  +
Sbjct: 243 RAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTMLCK---PNTVCYNAAL 299

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
           +GLC     E   E +  M    C PN  T+++LI   C    ++  +E+ E+M    C 
Sbjct: 300 KGLCIAERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCE 359

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           P+   YNI+I+S+  R + DD L   +LL  MV +   P    FN VL G 
Sbjct: 360 PDTVNYNIIINSLSERGRVDDAL---RLLNSMVCK---PDALGFNAVLKGF 404



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 159/339 (46%), Gaps = 24/339 (7%)

Query: 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFK 204
           AER + A +A  A  +              ++  ++D  C+  +++ A  L         
Sbjct: 143 AERVLGAARATGAANVV-------------TYTALIDGYCRSGRLDDALRLIASM--PVA 187

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
            D  +YN +  G C+ K+  +A E++ EM+     PN  T+   ++ + + G ++ A + 
Sbjct: 188 PDTYTYNTVLKGLCIAKKWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQL 247

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
             +M +  C  DVV Y+T+++GF   G + +A ++ + M+     P+   YNA ++ LC 
Sbjct: 248 LDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTML---CKPNTVCYNAALKGLCI 304

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
            +  E+   +  EMV KG  PN  T++++I  LC    ++ A+E + +M+   CEP+   
Sbjct: 305 AERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVN 364

Query: 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLI 444
           YNI+I    + G ++  L L   M   VC P+   +N ++      ++  D   A +L+ 
Sbjct: 365 YNIIINSLSERGRVDDALRLLNSM---VCKPDALGFNAVLKGFCRAERWHD---ASELIA 418

Query: 445 EMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           +M        + TFN +++ L   G    A ++     R
Sbjct: 419 QMFRDDCPLIEMTFNILIDTLCQNGLVNYATQVFEQMPR 457


>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
          Length = 722

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 185/383 (48%), Gaps = 5/383 (1%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID+ A+   + T W ++  +K+ ++     TF+++   Y  +G A++AV+ F  M + GC
Sbjct: 103 IDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGC 162

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
           +  + ++N+IL ++ +++    A  ++ ++ +  +  +  ++ ++ NG C   +T+ AL+
Sbjct: 163 KPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALK 222

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           +  EM  +G+ PN   Y I+L G  +A + ++  R    MK   C  D +T   ++ GF 
Sbjct: 223 MFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFC 282

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
            +G+I  A  +       G +  +  Y+++I  L +    +       +M   G  P+  
Sbjct: 283 KLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVV 342

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            Y ++IRG C  G ++ AL  +  M      P+   YN LI+ FCD G +++   L  ++
Sbjct: 343 LYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEI 402

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
               C P   TY ILI  M      D+   A ++  +M + G  P   TFN +++GL   
Sbjct: 403 SKNDCFPTSCTYTILICGMCRNGLLDE---ARQIFNQMENLGCSPSIMTFNALIDGLCKA 459

Query: 469 GNQGLAKEILRLQSRCGRLPRQF 491
           G    A+ +   +   G+ P  F
Sbjct: 460 GELEEARHLF-YKMEIGKNPSLF 481



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 103/462 (22%), Positives = 185/462 (40%), Gaps = 82/462 (17%)

Query: 103 PSSFDHAIDLAARLRDYRT--VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P++  + I L+   +  RT  V  L++ MK     P   T   + + +   G+ D A  +
Sbjct: 234 PNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFAL 293

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCL 219
                + G    +  +++++D L + K+ ++      K+F+   + DV+ Y ++  G+C 
Sbjct: 294 LQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCE 353

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
           V   + AL +L +M  RGL+P+   YN ++KG+   G +++A    LE+ K  C     T
Sbjct: 354 VGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCT 413

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK-------------- 325
           YT ++ G    G +  AR +F+ M N G  PS+ T+NA+I  LCK               
Sbjct: 414 YTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKME 473

Query: 326 ----------------------------DSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
                                       D  E+A  V ++MV  G  P+S  Y  ++   
Sbjct: 474 IGKNPSLFLRLSQGADRVMDTANGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWS 533

Query: 358 C----------------------------------HTGEMERALEFVGRMKDDECEPNVQ 383
           C                                    GE+E+A+  +  M        + 
Sbjct: 534 CRKGKLSVAFSLWLKYLRSLPSQEDETLKLAEEHFEKGELEKAVRCLLEMNFKLNNFEIA 593

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
            Y I +   C A   E  L++F  +       N  +  +LI+ +    K  +L +A  + 
Sbjct: 594 PYTIWLIGLCQARRSEEALKIFLVLKECQMDVNPPSCVMLINGLC---KDGNLEMAVDIF 650

Query: 444 IEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
           +  +++GFM      N++L  L+L      A ++L   +  G
Sbjct: 651 LYTLEKGFMLMPRICNQLLRSLILQDKMKHALDLLNRMNSAG 692



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 117/297 (39%), Gaps = 73/297 (24%)

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            T+N+V+    +    +  W+   E+K    +I   T++ ++  +   G  ++A   F  
Sbjct: 97  VTHNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGK 156

Query: 303 MVNGGVLPSVATYNAMIQV-----------------------------------LCKKDS 327
           M + G  P V TYN+++ V                                   LCK   
Sbjct: 157 MKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGK 216

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
            ++A+ +F+EM  KG  PN+  Y +++ GLC     +     +  MK   C P+  T N 
Sbjct: 217 TDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNA 276

Query: 388 LIRYFCDAGEIERG---LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD--------- 435
           L+  FC  G+I+     L+LFEK G  +    +  Y+ LI  +F  K+ D+         
Sbjct: 277 LLDGFCKLGQIDEAFALLQLFEKEGYVL---GIKGYSSLIDGLFRAKRYDEVQEWCRKMF 333

Query: 436 ------------LLVAG-----------KLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
                       +L+ G            +L +M  RG  P  + +N ++ G   +G
Sbjct: 334 KAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVG 390



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 38/210 (18%)

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           S  T+N +I +L K D  +    + EE+          T++V+I     +G  E+A+E  
Sbjct: 95  SWVTHNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESF 154

Query: 371 GRMKDDECEPNVQTYN-----------------------------------ILIRYFCDA 395
           G+MKD  C+P+V TYN                                   IL+   C  
Sbjct: 155 GKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKN 214

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
           G+ +  L++F++M      PN   Y I++S +   K++DD+    +LL  M   G  P  
Sbjct: 215 GKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDV---HRLLNTMKVSGCCPDS 271

Query: 456 FTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
            T N +L+G   +G    A  +L+L  + G
Sbjct: 272 ITCNALLDGFCKLGQIDEAFALLQLFEKEG 301



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/251 (20%), Positives = 112/251 (44%), Gaps = 9/251 (3%)

Query: 102 SPS--SFDHAIDLAARLRDYRTVWTLVHRMK-----SLSLGPTQKTFAII--AERYVSAG 152
           SPS  +F+  ID   +  +      L ++M+     SL L  +Q    ++  A  +    
Sbjct: 443 SPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTANGFHRVD 502

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNV 212
           + + A ++   M ++GC  S   +  ++   C++ K+  A++L+  +     +       
Sbjct: 503 REEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKYLRSLPSQEDETLK 562

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           +A          KA+  L EM  +  N  +  Y I L G  +A + EEA + FL +K+ +
Sbjct: 563 LAEEHFEKGELEKAVRCLLEMNFKLNNFEIAPYTIWLIGLCQARRSEEALKIFLVLKECQ 622

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
            +++  +   +++G    G ++ A ++F   +  G +      N +++ L  +D +++A+
Sbjct: 623 MDVNPPSCVMLINGLCKDGNLEMAVDIFLYTLEKGFMLMPRICNQLLRSLILQDKMKHAL 682

Query: 333 LVFEEMVGKGY 343
            +   M   GY
Sbjct: 683 DLLNRMNSAGY 693


>gi|449461475|ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 775

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 120/432 (27%), Positives = 187/432 (43%), Gaps = 73/432 (16%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS---LN 174
           + R+   LV+ +    L P + T++++ +     G  ++A + +  M   G R S   LN
Sbjct: 278 NLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLN 337

Query: 175 S-------------------------------FNTILDLLCKEKKVEKAYNLF-KVFRGK 202
           S                               FNT+L  LCKE K+ +A NL+ +V    
Sbjct: 338 SILEGYLKCQSWQNAFTMFNDALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKG 397

Query: 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262
              +V+SYN I  G C     N A +V KEM+D G  PN  T+ I++ GYF+ G IE A+
Sbjct: 398 ISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAF 457

Query: 263 RFFLEMK---------------KRKCEID--------------------VVTYTTIVHGF 287
             F  MK               K  C+                       + Y TI+ GF
Sbjct: 458 SIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGF 517

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
              G I  A NV+  M   G+ PS  TY ++I   CK ++++ A+ +  +M  KG   + 
Sbjct: 518 IKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDI 577

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
             Y  +I G C   +M+ A E +  ++     PN   YN +I  F +   +E  ++L++K
Sbjct: 578 KAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKK 637

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467
           M +     +L TY  LI  +    KS  LL A  +  EM+ +G +P       ++NGL  
Sbjct: 638 MVNEGIPCDLKTYTSLIDGLL---KSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCN 694

Query: 468 IGNQGLAKEILR 479
            G    A++IL 
Sbjct: 695 KGQFENARKILE 706



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 163/330 (49%), Gaps = 4/330 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   TF I+ + Y   G  + A  IF  M +     +  +   I+  LCK  +  +  +L
Sbjct: 435 PNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDL 494

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F  F  + F    + YN I +G+      N A  V +EM + G+ P+  TY  ++ G+ +
Sbjct: 495 FNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCK 554

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
              I+ A +   +MK++  ++D+  Y T++ GF    ++K A  + + +   G+ P+   
Sbjct: 555 GNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFI 614

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN+MI      ++VE AI ++++MV +G   +  TY  +I GL  +G +  A +    M 
Sbjct: 615 YNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEML 674

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
                P+ + + +LI   C+ G+ E   ++ E M     +P++  YN LI+  F   K  
Sbjct: 675 SKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHF---KEG 731

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           +L  A +L  EM+DRG +P   T++ ++NG
Sbjct: 732 NLQEAFRLHDEMLDRGLVPDNITYDILVNG 761



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 150/312 (48%), Gaps = 1/312 (0%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177
           D    +++ HRMK  ++ PT  T  II +    AG++     +F      G   +   +N
Sbjct: 452 DIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYN 511

Query: 178 TILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
           TI+D   KE  +  A N+++ +         ++Y  + +G+C     + AL++L +M  +
Sbjct: 512 TIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRK 571

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           GL  ++  Y  ++ G+ +   ++ A     E++      +   Y +++ GF  +  ++ A
Sbjct: 572 GLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEA 631

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
            +++  MVN G+   + TY ++I  L K   +  A  +  EM+ KG +P+   + V+I G
Sbjct: 632 IDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLING 691

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
           LC+ G+ E A + +  M      P+V  YN LI      G ++    L ++M     +P+
Sbjct: 692 LCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLDRGLVPD 751

Query: 417 LDTYNILISSMF 428
             TY+IL++  F
Sbjct: 752 NITYDILVNGKF 763



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/393 (23%), Positives = 169/393 (43%), Gaps = 47/393 (11%)

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
           A RL+D      +V+  KS++L         + + Y   G    A+ +   + E G   +
Sbjct: 247 ALRLKD-----DMVNCGKSMNLAVATS----LMKGYCMQGNLRSALVLVNEISESGLVPN 297

Query: 173 LNSFNTILDLLCKEKKVEKA----------------YNLFKVFRGKFK------------ 204
             +++ ++D  CK   +EKA                Y+L  +  G  K            
Sbjct: 298 KVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFN 357

Query: 205 -------ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
                  A+V ++N + +  C   + N+A  +  E++ +G++PN+ +YN ++ G+ R   
Sbjct: 358 DALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDN 417

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           I  A + + EM       + VT+T ++ G+   G+I+ A ++F  M +  +LP+  T   
Sbjct: 418 INAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGI 477

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           +I+ LCK         +F + V +G++P    YN +I G    G +  A      M +  
Sbjct: 478 IIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVG 537

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
             P+  TY  LI  FC    I+  L+L   M       ++  Y  LI     R+   D+ 
Sbjct: 538 ITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRR---DMK 594

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
            A +LL E+   G  P +F +N ++ G   + N
Sbjct: 595 SAHELLNELRGAGLSPNRFIYNSMITGFKNMNN 627



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 128/268 (47%), Gaps = 10/268 (3%)

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           D  +Y++  +  CL   +  AL +L+EM   G  P   T+  V+    + G + EA R  
Sbjct: 192 DQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACVKEGNVAEALRLK 251

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
            +M      +++   T+++ G+ + G ++ A  + + +   G++P+  TY+ +I   CK 
Sbjct: 252 DDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKN 311

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP---NV 382
            ++E A   + EM  KG   +  + N ++ G       + A      M +D  E    NV
Sbjct: 312 GNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAF----TMFNDALESGLANV 367

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
            T+N L+ + C  G++     L++++ +    PN+ +YN +I       + D++  A K+
Sbjct: 368 FTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNII---LGHCRKDNINAACKV 424

Query: 443 LIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
             EM+D GF P   TF  +++G    G+
Sbjct: 425 YKEMLDNGFTPNAVTFTILMDGYFKKGD 452



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/235 (20%), Positives = 96/235 (40%), Gaps = 36/235 (15%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
            M  + + P+  T+  + + +      D A+K+   M   G +  + ++ T++D  CK +
Sbjct: 532 EMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRR 591

Query: 188 KVEKAYNLFKVFRGK---------------FK---------------------ADVISYN 211
            ++ A+ L    RG                FK                      D+ +Y 
Sbjct: 592 DMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYT 651

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
            + +G     R   A ++  EM+ +G+ P+   + +++ G    GQ E A +   +M  +
Sbjct: 652 SLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGK 711

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
                V+ Y T++ G    G ++ A  + D M++ G++P   TY+ ++    K D
Sbjct: 712 NMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILVNGKFKGD 766



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 88/226 (38%), Gaps = 48/226 (21%)

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           YN  L    + G I EA + FL+ K R  E+D   Y+  VH                   
Sbjct: 163 YNFPLD--IQEGNILEAEQHFLQAKARGVELDQEAYSIFVH------------------- 201

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
                           +LC K +   A+ +  EM   G++P   T+  VI      G + 
Sbjct: 202 ----------------LLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACVKEGNVA 245

Query: 365 RALEFVGRMKDD--EC--EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
            AL    R+KDD   C    N+     L++ +C  G +   L L  ++     +PN  TY
Sbjct: 246 EAL----RLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTY 301

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
           ++LI       K+ ++  A +   EM  +G     ++ N +L G L
Sbjct: 302 SVLIDGCC---KNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYL 344


>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
          Length = 948

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 176/371 (47%), Gaps = 8/371 (2%)

Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           A   ++FD  +     L   R    LV RM +    P   T+  + +      +AD A  
Sbjct: 242 AADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARA 301

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWC 218
           +   + E     ++  FNT++     E K+ +A  L++    K  + D  +Y+++ +G C
Sbjct: 302 MLGRVPE----LNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLC 357

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
            + R + A+ +L+EM  +G  PN+ TY IVL  + + G  ++      EM  +   ++  
Sbjct: 358 KLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQ 417

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
            Y  +++     G +  A  +   M + G  P + +YN +I  LC  + +E A  +FE +
Sbjct: 418 GYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENL 477

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
           + +G + N  TYN +I  L   G  + A+     M    C  +V +YN LI+  C  G +
Sbjct: 478 LEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNV 537

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           +R L L E+M      PN  +YNILIS +   ++  D L   K   +M+++G  P   T+
Sbjct: 538 DRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSK---QMLNQGLAPDIVTY 594

Query: 459 NRVLNGLLLIG 469
           N ++NGL  +G
Sbjct: 595 NTLINGLCKMG 605



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 185/400 (46%), Gaps = 13/400 (3%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLS-LGPTQKTFAI 143
           +ALH  + L        S  S++  + + AR   +     L  RM     + PT  TF +
Sbjct: 121 RALHLLDQLPRRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGV 180

Query: 144 IAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGK 202
            A      G+A+ A+ +   M  HGC      + T++  LC +  V +A  L  ++    
Sbjct: 181 AARALCRLGRANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMG 240

Query: 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262
             ADV +++ +  G C + R  +A  ++  M+ +G  P + TY  +L+G  R  Q +EA 
Sbjct: 241 CAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEA- 299

Query: 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322
                M  R  E++VV + T++ G    G++  A  +++ M   G  P   TY+ ++  L
Sbjct: 300 ---RAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGL 356

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
           CK   + +A+ +  EM  KG+ PN  TY +V+   C  G  +     +  M       N 
Sbjct: 357 CKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNS 416

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
           Q YN +I   C  G ++  + L ++M S  C P++ +YN +I  +   ++ ++   A  +
Sbjct: 417 QGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEE---AEHM 473

Query: 443 LIEMVDRGFMPRKFTFNRVLNGLLLIGNQG----LAKEIL 478
              +++ G +    T+N +++ LL  G       LAKE++
Sbjct: 474 FENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMI 513



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 152/315 (48%), Gaps = 4/315 (1%)

Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           AH+ S   H +    +L    +   L+  M+     P   T+ I+   +   G  D    
Sbjct: 346 AHTYSILMHGL---CKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRA 402

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWC 218
           +   M   G   +   +N ++  LCK+ ++++A  L +  R +    D+ SYN I    C
Sbjct: 403 LLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLC 462

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
             ++  +A  + + +++ G+  N  TYN ++    R G+ ++A R   EM    C +DVV
Sbjct: 463 NNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVV 522

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           +Y  ++      G + R+  + + M   G+ P+  +YN +I  LCK+  V +A+ + ++M
Sbjct: 523 SYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQM 582

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
           + +G  P+  TYN +I GLC  G M  AL  + ++ ++   P++ TYNILI + C    +
Sbjct: 583 LNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLL 642

Query: 399 ERGLELFEKMGSGVC 413
           +    L  +  + VC
Sbjct: 643 DDAAMLLNRAMAAVC 657



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 143/291 (49%), Gaps = 1/291 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T++I+       G+   AV++   M + G   ++ ++  +L   CK    +    L
Sbjct: 344 PDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRAL 403

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            +    K    +   YN +    C   R ++A+ +++EM  +G NP++ +YN ++     
Sbjct: 404 LEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCN 463

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
             Q+EEA   F  + +     + +TY TI+H     G  + A  +   M+  G    V +
Sbjct: 464 NEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVS 523

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN +I+ +CK  +V+ ++++ EEM  KG  PN+ +YN++I  LC    +  ALE   +M 
Sbjct: 524 YNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQML 583

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           +    P++ TYN LI   C  G +   L L EK+ +    P++ TYNILIS
Sbjct: 584 NQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILIS 634



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 115/272 (42%), Gaps = 21/272 (7%)

Query: 225 KALEVLKEMVDR-GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           +AL +L ++  R G+ P+  +YN+VL    RA    +A   +  M  R    D V  TT 
Sbjct: 121 RALHLLDQLPRRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHR----DRVPPTTF 176

Query: 284 VHGFGV-----VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
             G        +G    A  +  GM   G +P    Y  +I  LC +  V  A  +  EM
Sbjct: 177 TFGVAARALCRLGRANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEM 236

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
           +  G   +  T++ V+RG+C  G +  A   V RM    C P V TY  L++  C   + 
Sbjct: 237 LLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQA 296

Query: 399 ERGLELFEKMGSGVCLPNLDT--YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
           +    +  +      +P L+   +N +I       K   L  A +L   M  +G  P   
Sbjct: 297 DEARAMLGR------VPELNVVLFNTVIGGCLAEGK---LAEATELYETMGLKGCQPDAH 347

Query: 457 TFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           T++ +++GL  +G    A  +LR   + G  P
Sbjct: 348 TYSILMHGLCKLGRISSAVRLLREMEKKGFAP 379


>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
 gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
          Length = 948

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 157/296 (53%), Gaps = 5/296 (1%)

Query: 176 FNTILDLLCKEKKVEKAYNLF--KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           +NT+++      + E+A +L    +    F+ D  ++N++ +G C       ALE L EM
Sbjct: 339 YNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEM 398

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           V +G  PN+ TY I++ G+ + G  EEA +    M  +   ++ V Y  ++      G+I
Sbjct: 399 VKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKI 458

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           + A  ++  M + G  P + T+N++I  LCK D +E A+ ++ +M+ +G + N+ TYN +
Sbjct: 459 QDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTL 518

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           I        +++A + VG M+   C  +  TYN LI+  C  G  E+ L L E+M     
Sbjct: 519 IHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEI 578

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
            P++++ NILI+S     K +D L   + L +M+ RG  P   T+N ++NGL  +G
Sbjct: 579 FPSINSCNILINSFCRTGKVNDAL---QFLRDMIQRGLTPDIVTYNSLINGLCKMG 631



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 155/331 (46%), Gaps = 2/331 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  ID   +     +    +  M      P   T+ I+ + +   G  + A K+  SM
Sbjct: 374 TFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSM 433

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
              G   +   +N ++  LCK+ K++ A  ++     K  K D+ ++N +  G C   + 
Sbjct: 434 SAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKM 493

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +AL + ++M+  G+  N  TYN ++  + R   I++A +   EM+ R C +D +TY  +
Sbjct: 494 EEALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGL 553

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +      G  ++   + + M    + PS+ + N +I   C+   V +A+    +M+ +G 
Sbjct: 554 IKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGL 613

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+  TYN +I GLC  G  + AL     ++     P+  TYN LI  +C  G      +
Sbjct: 614 TPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGLFNDACQ 673

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
           L  K  S   +PN  T++ILI + FV+  SD
Sbjct: 674 LLFKGVSNGFIPNEITWSILI-NYFVKNNSD 703



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 107/414 (25%), Positives = 177/414 (42%), Gaps = 37/414 (8%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           ++  F        Y HS   +   ID    + +++ +  L+ +MK       +  F +I 
Sbjct: 77  SMDLFEKAGLQRGYIHSFHVYYLLIDKLGNVGEFKMIDKLLKQMKDEGCVFKESLFILIM 136

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQ-SLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKF 203
             Y  AG   +A ++ L M    C + +  S+N +L++L      + A N+F  +     
Sbjct: 137 RYYGKAGLPGQATRLLLDMWGVYCFEPTFKSYNVVLEILVAGNCPKVAPNVFYDMLSRGI 196

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
              V ++ V+   +C+V   + A  +L++M   G  PN   Y +++       ++ EA +
Sbjct: 197 SPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMK 256

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM----------VNGGVL---- 309
              EM    CE DV T+  ++HG    G I  A  + D M          + G ++    
Sbjct: 257 LLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLC 316

Query: 310 -----------------PSVATYNAMIQVLCKKDSVENA-ILVFEEMVGKGYMPNSTTYN 351
                            P+   YN +I         E A  L+++ MV  G+ P++ T+N
Sbjct: 317 RMGKVDEARAMLSKIPNPNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFN 376

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
           ++I GLC  G +  ALEF+  M     EPNV TY ILI  FC  G  E   ++   M + 
Sbjct: 377 IMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAK 436

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
               N   YN LI ++    K  D L   ++  EM  +G  P  +TFN ++ GL
Sbjct: 437 GLSLNTVGYNCLIGALCKDGKIQDAL---QMYGEMSSKGCKPDIYTFNSLIYGL 487



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 134/295 (45%), Gaps = 36/295 (12%)

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
           ++LK+M D G     + + ++++ Y +AG   +A R  L+M    C         +V   
Sbjct: 115 KLLKQMKDEGCVFKESLFILIMRYYGKAGLPGQATRLLLDMWGVYCFEPTFKSYNVVLEI 174

Query: 288 GVVGEI-KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
            V G   K A NVF  M++ G+ P+V T+  +++  C  + V++A  +  +M   G +PN
Sbjct: 175 LVAGNCPKVAPNVFYDMLSRGISPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKHGCVPN 234

Query: 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
           S  Y ++I  L     +  A++ +  M    CEP+VQT+N +I   C AG I    +L +
Sbjct: 235 SIIYQMLIHALSENNRVNEAMKLLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKLHD 294

Query: 407 KM---------------GSGVC--------------LPNLDT--YNILISSMFVRKKSDD 435
           +M                 G+C              +PN +T  YN LI+   V  + ++
Sbjct: 295 RMLLRDFTADALIQGYLMHGLCRMGKVDEARAMLSKIPNPNTVLYNTLINGYVVSGRFEE 354

Query: 436 LLVAGKLLIE-MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPR 489
              A  LL + MV  GF P  FTFN +++GL   G    A E L    + G  P 
Sbjct: 355 ---AKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPN 406



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 72/150 (48%), Gaps = 8/150 (5%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+ +M    + P+  +  I+   +   GK + A++    M + G    + ++N++++ LC
Sbjct: 569 LIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLC 628

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  + ++A NLF   + K    D ++YN + + +C     N A ++L + V  G  PN  
Sbjct: 629 KMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGLFNDACQLLFKGVSNGFIPNEI 688

Query: 244 TYNIVLKGYFRAGQIEEA-------WRFFL 266
           T++I++  + +     E        W F+L
Sbjct: 689 TWSILINYFVKNNSDSEQFTILMGNWGFWL 718



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 76/166 (45%), Gaps = 5/166 (3%)

Query: 327 SVENAILVFEEM-VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
            V  ++ +FE+  + +GY+ +   Y ++I  L + GE +   + + +MKD+ C      +
Sbjct: 73  DVPTSMDLFEKAGLQRGYIHSFHVYYLLIDKLGNVGEFKMIDKLLKQMKDEGCVFKESLF 132

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCL-PNLDTYNILISSMFVRKKSDDLLVAGKLLI 444
            +++RY+  AG   +   L   M    C  P   +YN+++  +          VA  +  
Sbjct: 133 ILIMRYYGKAGLPGQATRLLLDMWGVYCFEPTFKSYNVVLEILVAGNCPK---VAPNVFY 189

Query: 445 EMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
           +M+ RG  P  +TF  V+    ++     A  +LR  ++ G +P  
Sbjct: 190 DMLSRGISPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKHGCVPNS 235


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 169/347 (48%), Gaps = 4/347 (1%)

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
           +   +++  M+    GP   T+  +   +  AG+ D A ++   M E G + +L +FN++
Sbjct: 207 KEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSM 266

Query: 180 LDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           ++ +CK  K+E A  +F ++ R     D +SYN +  G+C    +++AL V  EM  +G+
Sbjct: 267 VNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGI 326

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
            P++ T+  ++    +AG +E A     +M++R  +++ VT+T ++ GF   G +  A  
Sbjct: 327 MPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALL 386

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
              GM    + PSV  YNA+I   C    ++ A  +  EM  KG  P+  TY+ +I   C
Sbjct: 387 AVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYC 446

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLD 418
              +   A E   +M +    P+  TY+ LIR  C    +     LF+ M      P+  
Sbjct: 447 KNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEF 506

Query: 419 TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           TY  LI       K  ++  A  L  +MV  G +P   T++ ++NGL
Sbjct: 507 TYTSLIDG---HCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGL 550



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 164/312 (52%), Gaps = 7/312 (2%)

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIAN 215
           A + F SM   G   ++ ++N ++  LC     ++A ++ +  RG     +V++YN +  
Sbjct: 174 ARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVA 233

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
            +      + A  ++  M + GL PNL T+N ++ G  +AG++E+A + F EM +     
Sbjct: 234 AFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAP 293

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
           D V+Y T+V G+   G    A +VF  M   G++P V T+ ++I V+CK  ++E A+ + 
Sbjct: 294 DGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLV 353

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
            +M  +G   N  T+  +I G C  G ++ AL  V  MK    +P+V  YN LI  +C  
Sbjct: 354 RQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMV 413

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
           G ++   EL  +M +    P++ TY+ +IS+     K+ D   A +L  +M+++G +P  
Sbjct: 414 GRMDEARELLHEMEAKGLKPDVVTYSTIISAYC---KNCDTHSAFELNQQMLEKGVLPDA 470

Query: 456 FTFN---RVLNG 464
            T++   RVL G
Sbjct: 471 ITYSSLIRVLCG 482



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 151/294 (51%), Gaps = 5/294 (1%)

Query: 172 SLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVL 230
           S+ ++N +L L   +  +  A   F  +       +V +YN++    C      +AL +L
Sbjct: 155 SVLAYNAVL-LALSDASLTSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSIL 213

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
           ++M   G  PN+ TYN ++  +FRAG+++ A R    M++   + ++VT+ ++V+G    
Sbjct: 214 RDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKA 273

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           G+++ AR VFD MV  G+ P   +YN ++   CK      A+ VF EM  KG MP+  T+
Sbjct: 274 GKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTF 333

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
             +I  +C  G +ERA+  V +M++   + N  T+  LI  FC  G ++  L     M  
Sbjct: 334 TSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQ 393

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
               P++  YN LI+   +  + D+   A +LL EM  +G  P   T++ +++ 
Sbjct: 394 CRIKPSVVCYNALINGYCMVGRMDE---ARELLHEMEAKGLKPDVVTYSTIISA 444



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 154/313 (49%), Gaps = 4/313 (1%)

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
           A ++ D R V+     M    L P   ++  +   Y  AG +  A+ +F  M + G    
Sbjct: 273 AGKMEDARKVFD---EMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPD 329

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLK 231
           + +F +++ ++CK   +E+A  L +  R +  + + +++  + +G+C     + AL  ++
Sbjct: 330 VVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVR 389

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
            M    + P++  YN ++ GY   G+++EA     EM+ +  + DVVTY+TI+  +    
Sbjct: 390 GMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNC 449

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
           +   A  +   M+  GVLP   TY+++I+VLC +  + +A ++F+ M+  G  P+  TY 
Sbjct: 450 DTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYT 509

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
            +I G C  G +E AL    +M      P+V TY++LI     +       +L  K+   
Sbjct: 510 SLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHE 569

Query: 412 VCLPNLDTYNILI 424
             +P    Y+ L+
Sbjct: 570 DPIPANTKYDALM 582



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 143/283 (50%), Gaps = 6/283 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   TF  +      AG  +RAV +   M E G + +  +F  ++D  CK+  ++ A   
Sbjct: 328 PDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLA 387

Query: 196 FKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            +  +  + K  V+ YN + NG+C+V R ++A E+L EM  +GL P++ TY+ ++  Y +
Sbjct: 388 VRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCK 447

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
                 A+    +M ++    D +TY++++        +  A  +F  M+  G+ P   T
Sbjct: 448 NCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFT 507

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y ++I   CK+ +VE+A+ + ++MV  G +P+  TY+V+I GL  +     A + + ++ 
Sbjct: 508 YTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLY 567

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
            ++  P    Y+ L+ + C   E++  L L +    G C+  L
Sbjct: 568 HEDPIPANTKYDALM-HCCRKAELKSVLALLK----GFCMKGL 605



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 141/310 (45%), Gaps = 20/310 (6%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+H M++  L P   T++ I   Y        A ++   M E G      ++++++ +LC
Sbjct: 422 LLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLC 481

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            EK++  A+ LFK + +   + D  +Y  + +G C       AL +  +MV  G+ P++ 
Sbjct: 482 GEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVV 541

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKK-----------------RKCEIDVVTYTTIVHG 286
           TY++++ G  ++ +  EA +   ++                   RK E+  V    ++ G
Sbjct: 542 TYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVL--ALLKG 599

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
           F + G +  A  V+  M++       + Y+ +I   C+  +V  A+   ++M+  G+ PN
Sbjct: 600 FCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGFAPN 659

Query: 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
           ST+   +IRGL   G +  A + + ++ +     + +    LI    + G ++  L++  
Sbjct: 660 STSTISLIRGLFENGMVVEADQVIQQLLNYCSLADAEASKALIDLNLNEGNVDAVLDVLH 719

Query: 407 KMGSGVCLPN 416
            M     LP+
Sbjct: 720 GMAKDGLLPS 729


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 109/401 (27%), Positives = 183/401 (45%), Gaps = 58/401 (14%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           +   + ++  M S    P   T++ +     +A K ++A ++F  M  +G    +  + T
Sbjct: 203 FEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTT 262

Query: 179 ILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           ++D  CK   +E+A N F ++ R     +V++Y  + + +   ++ +KA EV + M+ +G
Sbjct: 263 LIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKG 322

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI-----------------DVVTY 280
             PN+ TY  ++ G  +AG+IE+A + +  MKK   EI                 +V TY
Sbjct: 323 CTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTY 382

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
             +V G     ++K AR++   M   G  P+   Y+A+I   CK   ++ A  VF  M+ 
Sbjct: 383 GALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLE 442

Query: 341 KGYMPNSTTY------------------------------NVVI-----RGLCHTGEMER 365
            GY PN  TY                              NVVI      GLC  G+ + 
Sbjct: 443 CGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDE 502

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           A + +  M++  C PNV TY  +I  F  +G +E+ LEL ++M S  C PN  TY +LI+
Sbjct: 503 AYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLIN 562

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT-FNRVLNGL 465
                  S  LL     L+E + + + PR    + +V+ G 
Sbjct: 563 HCC----STGLLDEAHKLLEEMKQTYWPRHVAGYRKVIEGF 599



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 178/377 (47%), Gaps = 32/377 (8%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK------- 188
           P+ + F  +   Y  +G    A K+   M + GC+     +N ++  +C  ++       
Sbjct: 110 PSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLD 169

Query: 189 -VEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
             EKAY   ++       + ++ +  +   C + +  KA  V++EM+ +G  P+ +TY+ 
Sbjct: 170 LAEKAYG--EMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSK 227

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           V+     A ++E+A++ F EMK+     DV  YTT++  F   G I++ARN FD M   G
Sbjct: 228 VIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDG 287

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
             P+V TY A+I    K   V  A  V+E M+ KG  PN  TY  +I GLC  G++E+A 
Sbjct: 288 CAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKAS 347

Query: 368 EFVGRMKDDEC-----------------EPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           +    MK +                   EPNV TY  L+   C A +++   +L + M  
Sbjct: 348 QIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSV 407

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
             C PN   Y+ LI       K D+   A ++   M++ G+ P  +T++ +++ L     
Sbjct: 408 EGCEPNHVVYDALIDGCCKAGKLDE---AQEVFTTMLECGYDPNVYTYSSLIDRLFKDKR 464

Query: 471 QGLAKEILR--LQSRCG 485
             LA ++L   L++ C 
Sbjct: 465 LDLALKVLSKMLENSCA 481



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 116/442 (26%), Positives = 193/442 (43%), Gaps = 55/442 (12%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSA---GKA--DR 156
           SP  F+  +    R  DY   + L+ +M      P    + I+     S+   GK   D 
Sbjct: 111 SPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLDL 170

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIAN 215
           A K +  M E G   +  + +     LC   K EKAYN+ +    K F  D  +Y+ +  
Sbjct: 171 AEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIG 230

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
             C   +  KA ++ +EM   G+ P++  Y  ++  + +AG IE+A  +F EM++  C  
Sbjct: 231 YLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAP 290

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
           +VVTYT ++H +    ++ +A  V++ M++ G  P++ TY A+I  LCK   +E A  ++
Sbjct: 291 NVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIY 350

Query: 336 EEMV-----------------GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           + M                  G    PN  TY  ++ GLC   +++ A + +  M  + C
Sbjct: 351 KIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGC 410

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL- 437
           EPN   Y+ LI   C AG+++   E+F  M      PN+ TY+ LI  +F  K+ D  L 
Sbjct: 411 EPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALK 470

Query: 438 -------------------------------VAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
                                           A KL++ M ++G  P   T+  +++G  
Sbjct: 471 VLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFG 530

Query: 467 LIGNQGLAKEILRLQSRCGRLP 488
             G      E+L+  S  G  P
Sbjct: 531 KSGRVEKCLELLQQMSSKGCAP 552



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/439 (23%), Positives = 177/439 (40%), Gaps = 91/439 (20%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
            M+     P   T+  +   Y+ + K  +A +++  M   GC  ++ ++  ++D LCK  
Sbjct: 282 EMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAG 341

Query: 188 KVEKAYNLFKVFR------------------GKFKADVISYNVIANGWCLVKRTNKALEV 229
           K+EKA  ++K+ +                     + +V +Y  + +G C   +  +A ++
Sbjct: 342 KIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDL 401

Query: 230 LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL----------------------- 266
           LK M   G  PN   Y+ ++ G  +AG+++EA   F                        
Sbjct: 402 LKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFK 461

Query: 267 ------------EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
                       +M +  C  +VV YT ++ G   VG+   A  +   M   G  P+V T
Sbjct: 462 DKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVT 521

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y AMI    K   VE  + + ++M  KG  PN  TY V+I   C TG ++ A + +  MK
Sbjct: 522 YTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCSTGLLDEAHKLLEEMK 581

Query: 375 ---------------------------------DDECEPNVQTYNILIRYFCDAGEIERG 401
                                            +++  P    Y +LI  F  AG +E  
Sbjct: 582 QTYWPRHVAGYRKVIEGFNREFIASLYLSFEISENDSVPVAPVYRVLIDNFIKAGRLEIA 641

Query: 402 LELFEKMG--SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
           LEL E++   S     N + +  LI ++ +  K+D    A +L  +M+ RG +P      
Sbjct: 642 LELNEELSSFSPFSAANQNIHITLIENLSLAHKADK---AFELYADMISRGSIPELSILV 698

Query: 460 RVLNGLLLIGNQGLAKEIL 478
            ++ GLL +     A ++L
Sbjct: 699 HLIKGLLRVNRWEEALQLL 717



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 142/341 (41%), Gaps = 45/341 (13%)

Query: 183 LCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           LCK  K  +A +L +  + +F  D + Y  + +G C      +A++ L  M      PN+
Sbjct: 20  LCKSGKWREALSLLE--KEEFVPDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLPNV 77

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TY I+L G     ++    R    M    C      + ++VH +   G+   A  +   
Sbjct: 78  LTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKK 137

Query: 303 MVNGGVLPSVATYNAMI----------------------------------------QVL 322
           MV  G  P    YN +I                                        + L
Sbjct: 138 MVQCGCQPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCL 197

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
           C     E A  V  EM+ KG++P+++TY+ VI  LC+  ++E+A +    MK +   P+V
Sbjct: 198 CGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDV 257

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
             Y  LI  FC AG IE+    F++M    C PN+ TY  LI +     KS  +  A ++
Sbjct: 258 YVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYL---KSRKVSKANEV 314

Query: 443 LIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
              M+ +G  P   T+  +++GL   G    A +I ++  +
Sbjct: 315 YEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKK 355



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/326 (21%), Positives = 126/326 (38%), Gaps = 46/326 (14%)

Query: 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262
           ++ D  +    A+  C   +  +AL +L++       P+   Y  ++ G   A   EEA 
Sbjct: 6   YRMDEFTLGCFAHSLCKSGKWREALSLLEK---EEFVPDTVLYTKMISGLCEASLFEEAM 62

Query: 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322
            F   M+   C  +V+TY  ++ G     ++ R + +   M+  G  PS   +N+++   
Sbjct: 63  DFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNSLVHAY 122

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT---------------------- 360
           C+      A  + ++MV  G  P    YN++I G+C +                      
Sbjct: 123 CRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGEMLEAG 182

Query: 361 ------------------GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
                             G+ E+A   +  M      P+  TY+ +I Y C+A ++E+  
Sbjct: 183 VVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAF 242

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           +LF++M      P++  Y  LI S     K+  +  A     EM   G  P   T+  ++
Sbjct: 243 QLFQEMKRNGIAPDVYVYTTLIDSFC---KAGFIEQARNWFDEMERDGCAPNVVTYTALI 299

Query: 463 NGLLLIGNQGLAKEILRLQSRCGRLP 488
           +  L       A E+  +    G  P
Sbjct: 300 HAYLKSRKVSKANEVYEMMLSKGCTP 325


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 114/416 (27%), Positives = 192/416 (46%), Gaps = 16/416 (3%)

Query: 82  HALKALH-----FFNILSYHPTYAHSPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSL 134
           H +K L      F ++L   P     PS  D    + +  R+     V +L  +M+   +
Sbjct: 55  HEIKGLEDAIDLFSDMLRSRPL----PSVVDFCKLMGVVVRMERPDLVISLYQKMERKQI 110

Query: 135 GPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN 194
                +F I+ + + S  K   A+  F  + + G    + +FNT+L  LC E +V +A N
Sbjct: 111 RCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALN 170

Query: 195 LF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
           LF ++F    + +V+++  + NG C   R  +A+ +L  M++ GL P   TY  ++ G  
Sbjct: 171 LFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMC 230

Query: 254 RAGQIEEAWRFFLEMKKRKCEI-DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
           + G    A     +M++    I +VV Y+ I+      G    A+N+F  M   G+ P +
Sbjct: 231 KKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDL 290

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            TYN+MI   C      +A  + +EM+ +   P+  TYN +I      G+   A E    
Sbjct: 291 FTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDE 350

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           M      PN  TY+ +I  FC    ++    +F  M +  C PNL T+N LI      K+
Sbjct: 351 MLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKR 410

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            DD +   +LL EM + G +    T+N +++G  L+G+   A ++L+     G  P
Sbjct: 411 IDDGM---ELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCP 463



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/389 (27%), Positives = 178/389 (45%), Gaps = 51/389 (13%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L H+M   +  P   TF  +       G+   AV +   M E G + +  ++ TI+D +C
Sbjct: 171 LFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMC 230

Query: 185 KEKKVEKAYNLFKVFR--GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           K+     A NL +          +V+ Y+ I +  C   R + A  +  EM ++G+ P+L
Sbjct: 231 KKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDL 290

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TYN ++ G+  +G+  +A +   EM +RK   DVVTY  +++ F   G+   A  ++D 
Sbjct: 291 FTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDE 350

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M+  G++P+  TY++MI   CK++ ++ A  +F  M  KG  PN  T+N +I G C    
Sbjct: 351 MLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKR 410

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGVC-------- 413
           ++  +E +  M +     +  TYN LI  F   G++   L+L ++M  SG+C        
Sbjct: 411 IDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDT 470

Query: 414 -------------------------------------LPNLDTYNILISSMFVRKKSDDL 436
                                                 P++ TYNILIS +    K    
Sbjct: 471 LLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGK---F 527

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           L A +L  EM  RG +P   T++ +++GL
Sbjct: 528 LEAEELYEEMPHRGIVPDTITYSSMIDGL 556



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 154/309 (49%), Gaps = 12/309 (3%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T++ + + +    + D A  +F  M   GC  +L +FNT++D  C  K+++    L
Sbjct: 358 PNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMEL 417

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             ++      AD  +YN + +G+ LV   N AL++L+EM+  GL P++ T + +L G   
Sbjct: 418 LHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCD 477

Query: 255 AGQIEEAWRFFLEMKKRK-----------CEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            G++++A   F  M+K K            E DV TY  ++ G    G+   A  +++ M
Sbjct: 478 NGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEM 537

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            + G++P   TY++MI  LCK+  ++ A  +F+ M  K + PN  T+  +I G C  G +
Sbjct: 538 PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRV 597

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           +  LE    M       N  TY  LI  F   G I   L++F++M S    P+  T   +
Sbjct: 598 DDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNM 657

Query: 424 ISSMFVRKK 432
           ++ ++ +++
Sbjct: 658 LTGLWSKEE 666



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 181/396 (45%), Gaps = 17/396 (4%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           +   ID   +   +     L   M+   + P   T+  +   + S+G+   A ++   M 
Sbjct: 258 YSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEML 317

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKRT 223
           E      + ++N +++   KE K  +A  L+     RG    + I+Y+ + +G+C   R 
Sbjct: 318 ERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGII-PNTITYSSMIDGFCKQNRL 376

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A  +   M  +G +PNL T+N ++ GY  A +I++      EM +     D  TY T+
Sbjct: 377 DAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTL 436

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK-- 341
           +HGF +VG++  A ++   M++ G+ P + T + ++  LC    +++A+ +F+ M     
Sbjct: 437 IHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKK 496

Query: 342 ---------GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
                    G  P+  TYN++I GL + G+   A E    M      P+  TY+ +I   
Sbjct: 497 DLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGL 556

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
           C    ++   ++F+ MGS    PN+ T+  LI+      + DD L   +L  EM  RG +
Sbjct: 557 CKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGL---ELFCEMGRRGIV 613

Query: 453 PRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
               T+  ++ G   +GN   A +I +     G  P
Sbjct: 614 ANAITYITLICGFRKVGNINGALDIFQEMISSGVYP 649



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 152/326 (46%), Gaps = 19/326 (5%)

Query: 63  PSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDYR 120
           P+      ++D   K+  N    A H F +++   T   SP+  +F+  ID     +   
Sbjct: 358 PNTITYSSMIDGFCKQ--NRLDAAEHMFYLMA---TKGCSPNLITFNTLIDGYCGAKRID 412

Query: 121 TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180
               L+H M    L     T+  +   +   G  + A+ +   M   G    + + +T+L
Sbjct: 413 DGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLL 472

Query: 181 DLLCKEKKVEKAYNLFKVFRGKFK------------ADVISYNVIANGWCLVKRTNKALE 228
           D LC   K++ A  +FKV +   K             DV +YN++ +G     +  +A E
Sbjct: 473 DGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEE 532

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           + +EM  RG+ P+  TY+ ++ G  +  +++EA + F  M  +    +VVT+TT+++G+ 
Sbjct: 533 LYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYC 592

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G +     +F  M   G++ +  TY  +I    K  ++  A+ +F+EM+  G  P++ 
Sbjct: 593 KAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTI 652

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMK 374
           T   ++ GL    E++RA+  + +++
Sbjct: 653 TIRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 128/268 (47%), Gaps = 4/268 (1%)

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           + +G+  +K    A+++  +M+     P++  +  ++    R  + +     + +M++++
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
              D+ ++T ++  F    ++  A + F  +   G+ P V T+N ++  LC +D V  A+
Sbjct: 110 IRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEAL 169

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
            +F +M      PN  T+  ++ GLC  G +  A+  + RM +D  +P   TY  ++   
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 393 CDAGEIERGLELFEKMGS-GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
           C  G+    L L  KM      +PN+  Y+ +I S+    +  D   A  L  EM ++G 
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSD---AQNLFTEMQEKGI 286

Query: 452 MPRKFTFNRVLNGLLLIGNQGLAKEILR 479
            P  FT+N ++ G    G    A+++L+
Sbjct: 287 FPDLFTYNSMIVGFCSSGRWSDAEQLLQ 314



 Score = 42.4 bits (98), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 17/170 (10%)

Query: 328 VENAILVFEEMVGKGYMPNSTTY----NVVIRGLCHTGEMER---ALEFVGRMKDDECEP 380
           +E+AI +F +M+    +P+   +     VV+R       MER    +    +M+  +   
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVR-------MERPDLVISLYQKMERKQIRC 112

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAG 440
           ++ ++ ILI+ FC   ++   L  F K+      P++ T+N L+  + V  +  + L   
Sbjct: 113 DIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEAL--- 169

Query: 441 KLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
            L  +M +    P   TF  ++NGL   G    A  +L      G  P Q
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQ 219


>gi|302758228|ref|XP_002962537.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
 gi|300169398|gb|EFJ36000.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
          Length = 439

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/389 (27%), Positives = 184/389 (47%), Gaps = 46/389 (11%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P + TF+++      AG+   AV+ +  M E  C  +L   N +L  LC+  K+++A   
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGKMDQA--- 57

Query: 196 FKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR-GLNPNLTTYNIVLK--- 250
             +FRG +    VI+ N++ NG+C ++  +KALE+  EM     L P  TTY  ++K   
Sbjct: 58  MAIFRGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYC 117

Query: 251 ------------------------------GYFRAGQIEEAWRFFLEM-KKRKCEIDVVT 279
                                         G+ +A +++EA++  L+M +K+  + D+V 
Sbjct: 118 KMDRLDQARQLLEESSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVA 177

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           +  I+HGF   G ++ A  + + +V+ G +P+  TY  +I   CK  ++  A+ +F+ + 
Sbjct: 178 WNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLS 237

Query: 340 GKGYM--PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
            + +   PN  T+N +I GLC    +E A E V +MK  +   +  TY  L+   C  G 
Sbjct: 238 SRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGR 297

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
                 +FE+M    C P++ TY  L+ +     K+  L  A +++  MV +G  P   T
Sbjct: 298 TSEVSRVFEEMLREGCNPSVVTYTTLVHA---HCKAGSLQDAQQVIRSMVAKGIPPDVTT 354

Query: 458 FNRVLNGLLLIGNQGLAKEILR--LQSRC 484
           +  +L GL   G    A E     L+ RC
Sbjct: 355 YTVLLEGLFENGKVRTATEFFEKILRERC 383



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 159/350 (45%), Gaps = 42/350 (12%)

Query: 125 LVHRM-KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           L H M K+ +L P   T+  I + Y    + D+A ++        C   + +  ++    
Sbjct: 92  LFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQARQLL--EESSCCSSDVIAITSVARGF 149

Query: 184 CKEKKVEKAYNLF--KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           CK ++V++AY L    V +   K D++++NVI +G+C   R  +A E+L+ +V  G  PN
Sbjct: 150 CKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPN 209

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFL----------------------------------- 266
             TY  ++ G+ ++G + EA + F                                    
Sbjct: 210 AVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFEL 269

Query: 267 --EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
             +MK R    D  TYTT++ G    G       VF+ M+  G  PSV TY  ++   CK
Sbjct: 270 VKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCK 329

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
             S+++A  V   MV KG  P+ TTY V++ GL   G++  A EF  ++  + C P    
Sbjct: 330 AGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVV 389

Query: 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
           Y+ L+R  C A  ++  ++ + +M      P+  T  +L+  +  R ++D
Sbjct: 390 YSALVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKRGRTD 439


>gi|296090648|emb|CBI41047.3| unnamed protein product [Vitis vinifera]
          Length = 514

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 168/324 (51%), Gaps = 8/324 (2%)

Query: 156 RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIAN 215
           R  K+ L++ E G     + F  +LD LCK   V++A +LF+  R +F   +  +  +  
Sbjct: 71  RVPKLELALQESGV---AHVFGCLLDALCKNGSVKEAASLFEDMRIRFTPTLKHFTSLLY 127

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
           GWC   +  +A  VL ++ + G  P++  YN +L GY  AG++ +A+    EM++++CE 
Sbjct: 128 GWCREGKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEP 187

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
           +V+++TT++       +++ A  VF  M + G      TY  +I   CK   +     + 
Sbjct: 188 NVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELL 247

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
           + M+ +G++PN  TY  ++       E+E  +E +  M+   C P++  YNI+IR  C  
Sbjct: 248 DNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKL 307

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM--P 453
           GEI+ G+ ++ +M +    P LDT+ I+I     ++    L+ A +   EMV RG +  P
Sbjct: 308 GEIKEGVRVWNEMEATGLSPGLDTFVIMIHGFLSQRC---LVEACEFFKEMVGRGLLSAP 364

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEI 477
           +  T   +LN LL      ++K++
Sbjct: 365 QYGTLKELLNSLLRAEKLEMSKDV 388



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 108/419 (25%), Positives = 183/419 (43%), Gaps = 45/419 (10%)

Query: 98  TYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQK----TFAIIAERYVSAGK 153
           TY  +   F   ++     + YR +     R+  L L   +      F  + +     G 
Sbjct: 46  TYDQNYDEFSADVE-----KVYRILRKFHSRVPKLELALQESGVAHVFGCLLDALCKNGS 100

Query: 154 ADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV-EKAYNLFKVFRGKFKADVISYNV 212
              A  +F  M       +L  F ++L   C+E K+ E  Y L ++    F+ D++ YN 
Sbjct: 101 VKEAASLFEDMRIRF-TPTLKHFTSLLYGWCREGKLMEAKYVLVQIREAGFEPDIVVYNN 159

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           +  G+    +   A ++LKEM  +   PN+ ++  +++      ++EEA R F EM+   
Sbjct: 160 LLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCG 219

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
           C  D VTYTT++ GF   G+I +   + D M+  G +P+  TY  ++    KK+ +E  I
Sbjct: 220 CPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECI 279

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
            + EEM   G  P+   YN+VIR  C  GE++  +     M+     P + T+ I+I  F
Sbjct: 280 ELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRVWNEMEATGLSPGLDTFVIMIHGF 339

Query: 393 CDAGEIERGLELFEKM-GSGV-CLPNLDTYNILISSMF--------------VRKKSDDL 436
                +    E F++M G G+   P   T   L++S+               +  K  DL
Sbjct: 340 LSQRCLVEACEFFKEMVGRGLLSAPQYGTLKELLNSLLRAEKLEMSKDVWSCIMTKGCDL 399

Query: 437 LV------------------AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
            V                  A    ++M+D G MP+  TF +++ GL  + N+ +A EI
Sbjct: 400 NVYAWTIWIHALFSNGHVKEACSYCLDMMDAGVMPQPDTFAKLMRGLRKLYNRQIAAEI 458


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 178/341 (52%), Gaps = 6/341 (1%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M+S  + P    F+ +   +  +G  D+A+  F S+ E G       +  ++   C++  
Sbjct: 366 MRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGM 425

Query: 189 VEKAYNL-FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           +  A NL  ++ +     DV++YN I +G C  K   +A ++  EM +R L P+  T  I
Sbjct: 426 ISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTI 485

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ G+ + G ++ A   F +MK+++  +DVVTY T++ GFG VG+I  A+ ++  MV+  
Sbjct: 486 LIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKE 545

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           +LP+  +Y+ ++  LC K  +  A  V++EM+ K   P     N +I+G C +G      
Sbjct: 546 ILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGE 605

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM--GSGVCLPNLDTYNILIS 425
            F+ +M  +   P+  +YN LI  F     + +   L +KM    G  +P++ TYN ++ 
Sbjct: 606 SFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILH 665

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
             F R+  + +  A  +L +M++RG  P + T+  ++NG +
Sbjct: 666 G-FCRQ--NQMKEAEVVLRKMIERGVNPDRSTYTCMINGFV 703



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 161/344 (46%), Gaps = 4/344 (1%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           W +   +    +G    T  I+       GK ++       + E G    + ++NT++  
Sbjct: 220 WGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISA 279

Query: 183 LCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
              +  +E+A+ L     GK F   V +YN + NG C   +  +A EV  EM+  GL+P+
Sbjct: 280 YSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPD 339

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
            TTY  +L    + G + E  + F +M+ R    D+V +++++  F   G + +A   F+
Sbjct: 340 STTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFN 399

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            +   G++P    Y  +IQ  C+K  +  A+ +  EM+ +G   +  TYN ++ GLC   
Sbjct: 400 SVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRK 459

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
            +  A +    M +    P+  T  ILI   C  G ++  +ELF+KM       ++ TYN
Sbjct: 460 MLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYN 519

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            L+       K  D+  A ++  +MV +  +P   +++ ++N L
Sbjct: 520 TLLDGF---GKVGDIDTAKEIWADMVSKEILPTPISYSILVNAL 560



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 173/395 (43%), Gaps = 8/395 (2%)

Query: 90  FNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
           F +++  P    SP   +++  I+   +   Y     +   M    L P   T+  +   
Sbjct: 290 FELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLME 349

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKAD 206
               G      K+F  M        L  F++++ L  +   ++KA   F  V       D
Sbjct: 350 ACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPD 409

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
            + Y ++  G+C     + A+ +  EM+ +G   ++ TYN +L G  +   + EA + F 
Sbjct: 410 NVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFN 469

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           EM +R    D  T T ++ G   +G ++ A  +F  M    +   V TYN ++    K  
Sbjct: 470 EMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVG 529

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            ++ A  ++ +MV K  +P   +Y++++  LC  G +  A      M     +P V   N
Sbjct: 530 DIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICN 589

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            +I+ +C +G    G    EKM S   +P+  +YN LI   FVR+  +++  A  L+ +M
Sbjct: 590 SMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYG-FVRE--ENMSKAFGLVKKM 646

Query: 447 VDR--GFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
            +   G +P  FT+N +L+G         A+ +LR
Sbjct: 647 EEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLR 681



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 104/459 (22%), Positives = 188/459 (40%), Gaps = 72/459 (15%)

Query: 65  LHWTPQLVDQIIKRLWNHALKALHFFNILSYH-PTYAH---SPSSFDHAIDLAARLRDYR 120
           +   P  V +++ R  N       F + L +H P + H   S S+  H +  + RL D +
Sbjct: 74  IRLNPLAVVEVLYRCRNDLTLGQRFVDQLGFHFPNFKHTSLSLSAMIHILVRSGRLSDAQ 133

Query: 121 TVWTLVHRMKSLS----LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSF 176
           +    + R   +S    +     TF+                          C  + + F
Sbjct: 134 SCLLRMIRRSGVSRLEIVNSLDSTFS-------------------------NCGSNDSVF 168

Query: 177 NTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235
           + ++    + +K+ +A+  F + R K F   + + N +      +     A  V +E+  
Sbjct: 169 DLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISR 228

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
            G+  N+ T NI++    + G++E+   F  +++++    D+VTY T++  +   G ++ 
Sbjct: 229 SGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEE 288

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
           A  + + M   G  P V TYN +I  LCK    E A  VF EM+  G  P+STTY  ++ 
Sbjct: 289 AFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLM 348

Query: 356 GLC-----------------------------------HTGEMERALEFVGRMKDDECEP 380
             C                                    +G +++AL +   +K+    P
Sbjct: 349 EACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIP 408

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAG 440
           +   Y ILI+ +C  G I   + L  +M    C  ++ TYN ++  +  RK    L  A 
Sbjct: 409 DNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKM---LGEAD 465

Query: 441 KLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           KL  EM +R   P  +T   +++G   +GN   A E+ +
Sbjct: 466 KLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQ 504



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 118/252 (46%), Gaps = 3/252 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L + M   +L P   T  I+ + +   G    A+++F  M E   R  + ++NT+LD   
Sbjct: 467 LFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFG 526

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K   ++ A  ++     K      ISY+++ N  C      +A  V  EM+ + + P + 
Sbjct: 527 KVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVM 586

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
             N ++KGY R+G   +   F  +M       D ++Y T+++GF     + +A  +   M
Sbjct: 587 ICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKM 646

Query: 304 V--NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
               GG++P V TYN+++   C+++ ++ A +V  +M+ +G  P+ +TY  +I G     
Sbjct: 647 EEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQD 706

Query: 362 EMERALEFVGRM 373
            +  A      M
Sbjct: 707 NLTEAFRIHDEM 718



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 116/240 (48%), Gaps = 3/240 (1%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID   +L + +    L  +MK   +     T+  + + +   G  D A +I+  M     
Sbjct: 487 IDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEI 546

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
             +  S++ +++ LC +  + +A+ ++ ++     K  V+  N +  G+C     +    
Sbjct: 547 LPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGES 606

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI--DVVTYTTIVHG 286
            L++M+  G  P+  +YN ++ G+ R   + +A+    +M++ +  +  DV TY +I+HG
Sbjct: 607 FLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHG 666

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
           F    ++K A  V   M+  GV P  +TY  MI     +D++  A  + +EM+ +G+ P+
Sbjct: 667 FCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPD 726


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 126/530 (23%), Positives = 227/530 (42%), Gaps = 54/530 (10%)

Query: 8   PPKNHLHFFCIYRGLSPLTTTSPA-------PLPPAAADP------AALASLILTSTDPR 54
           P K  + FF  + G S  TT            L P+A +        ++  ++ T     
Sbjct: 23  PIKFSVRFFSSWIGDSSQTTNGNGGPVPGGGDLLPSAKNENKRQVIDSVCQILETGPWGS 82

Query: 55  TLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAA 114
           ++   L    L+  P+LV  +++RL      A+++F         AH   +++  + + A
Sbjct: 83  SVENRLAELDLNPNPELVIGVLRRL-KDVNNAVNYFRWAERLTDRAHCREAYNSLLMVMA 141

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           R R +  +  ++  M     GP+  T   I   ++ + K   A     +M +   R + +
Sbjct: 142 RTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTMRKLKFRPAFS 201

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           ++  ++  L   +  +    LF+  +   +  +V  +  +   +    R + AL +L EM
Sbjct: 202 AYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEM 261

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT------------ 281
               L P++  YN+ +  + +AG+++ AW+FF EMK     +D VTYT            
Sbjct: 262 KSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRL 321

Query: 282 -----------------------TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
                                  T++ G+G+ G+ + A ++ +     G +PSV +YN +
Sbjct: 322 NEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCI 381

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           +  L +K  V+ A+  FEEM  K  +PN +TYN++I  LC  G++E AL     MKD   
Sbjct: 382 LSCLGRKGQVDEALKKFEEM-KKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGL 440

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
            PNV T NI++   C A  ++    +FE +    C P+  TY  LI  +    + D+   
Sbjct: 441 FPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDE--- 497

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           A KL  +M+D   +P    +  ++      G +    +I     R G  P
Sbjct: 498 AYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSP 547



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/403 (26%), Positives = 177/403 (43%), Gaps = 39/403 (9%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           S+++  ID+  +     T   +   MK   L P   T  I+ +R   A + D A  IF  
Sbjct: 410 STYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEG 469

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK----------------VFRGKFKA-- 205
           +    CR    ++ ++++ L +  +V++AY L++                + R  FK   
Sbjct: 470 LDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGR 529

Query: 206 ------------------DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
                             D++  N   +         K   + +E+ + G  P+  +Y I
Sbjct: 530 KEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTI 589

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ G  +AG   EA+  F  MK++ C +D   Y T++ GF   G++ +A  + + M   G
Sbjct: 590 LIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKG 649

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
             P+V TY ++I  L K D ++ A ++FEE   KG   N   Y+ +I G    G ++ A 
Sbjct: 650 HEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAY 709

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
             +  +      PNV T+N L+     A EI   L  F+ M    C PN  TY+ILI  +
Sbjct: 710 LIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGL 769

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
              +K +   V  +   EM  +GF P  FT+  +++GL   GN
Sbjct: 770 CKIRKFNKAFVFWQ---EMQKQGFKPNVFTYTTMISGLAKAGN 809



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 148/312 (47%), Gaps = 34/312 (10%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            L   +K+L   P  +++ I+    V AG A  A ++F +M E GC         +LD  
Sbjct: 570 ALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGC---------VLD-- 618

Query: 184 CKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
                                    +YN + +G+C   + NKA ++L+EM  +G  P + 
Sbjct: 619 -----------------------TRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVV 655

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY  V+ G  +  +++EA+  F E K +  E++VV Y++++ GFG VG I  A  + + +
Sbjct: 656 TYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEEL 715

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           +  G+ P+V T+N ++  L K + +  A++ F+ M      PN  TY+++I GLC   + 
Sbjct: 716 MQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKF 775

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
            +A  F   M+    +PNV TY  +I     AG I     LFEK      + +   YN +
Sbjct: 776 NKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAI 835

Query: 424 ISSMFVRKKSDD 435
           I  +    ++ D
Sbjct: 836 IEGLSNANRASD 847



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 182/372 (48%), Gaps = 5/372 (1%)

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           YA +   F   I + AR        +L+  MKS SL P    + +  + +  AGK D A 
Sbjct: 231 YAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAW 290

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGW 217
           K F  M  +G      ++ +++ +LCK  ++ +A  LF+ + + K      +YN +  G+
Sbjct: 291 KFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGY 350

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
            +  +   A  +L+    +G  P++ +YN +L    R GQ++EA + F EMKK     ++
Sbjct: 351 GMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIP-NL 409

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
            TY  ++      G+++ A  V D M + G+ P+V T N M+  LCK   +++A  +FE 
Sbjct: 410 STYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEG 469

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           +  K   P++ TY  +I GL   G ++ A +   +M D    PN   Y  LIR F   G 
Sbjct: 470 LDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGR 529

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
            E G +++ +M    C P+L   N  +  +F   K+ ++     L  E+ + GF+P   +
Sbjct: 530 KEDGHKIYNEMLRLGCSPDLLLLNTYMDCVF---KAGEIEKGRALFQEIKNLGFIPDARS 586

Query: 458 FNRVLNGLLLIG 469
           +  +++GL+  G
Sbjct: 587 YTILIHGLVKAG 598



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 155/333 (46%), Gaps = 3/333 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P    +  +   Y  AGK + A  +       GC  S+ S+N IL  L ++ +V++A   
Sbjct: 338 PCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKK 397

Query: 196 FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
           F+  +     ++ +YN++ +  C   +   AL V   M D GL PN+ T NI++    +A
Sbjct: 398 FEEMKKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKA 457

Query: 256 GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
            ++++A   F  +  + C  D VTY +++ G G  G +  A  +++ M++   +P+   Y
Sbjct: 458 QRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVY 517

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
            ++I+   K    E+   ++ EM+  G  P+    N  +  +   GE+E+       +K+
Sbjct: 518 TSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKN 577

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
               P+ ++Y ILI     AG      ELF  M    C+ +   YN +I       KS  
Sbjct: 578 LGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFC---KSGK 634

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
           +  A +LL EM  +G  P   T+  V++GL  I
Sbjct: 635 VNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKI 667



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 164/332 (49%), Gaps = 4/332 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+ I+ +    AGK + A+ +  +M + G   ++ + N ++D LCK ++++ A ++
Sbjct: 407 PNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSI 466

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F+    K  + D ++Y  +  G     R ++A ++ ++M+D    PN   Y  +++ +F+
Sbjct: 467 FEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFK 526

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G+ E+  + + EM +  C  D++   T +      GEI++ R +F  + N G +P   +
Sbjct: 527 CGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARS 586

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y  +I  L K      A  +F  M  +G + ++  YN VI G C +G++ +A + +  MK
Sbjct: 587 YTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMK 646

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
               EP V TY  +I        ++    LFE+  S     N+  Y+ LI       + D
Sbjct: 647 TKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRID 706

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
           +  +   ++ E++ +G  P  +T+N +L+ L+
Sbjct: 707 EAYL---IMEELMQKGLTPNVYTWNCLLDALV 735


>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 185/383 (48%), Gaps = 5/383 (1%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID+ A+   + T W ++  +K+ ++     TF+++   Y  +G A++AV+ F  M + GC
Sbjct: 103 IDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGC 162

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
           +  + ++N+IL ++ +++    A  ++ ++ +  +  +  ++ ++ NG C   +T+ AL+
Sbjct: 163 KPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALK 222

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           +  EM  +G+ PN   Y I+L G  +A + ++  R    MK   C  D +T   ++ GF 
Sbjct: 223 MFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFC 282

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
            +G+I  A  +       G +  +  Y+++I  L +    +       +M   G  P+  
Sbjct: 283 KLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVV 342

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            Y ++IRG C  G ++ AL  +  M      P+   YN LI+ FCD G +++   L  ++
Sbjct: 343 LYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEI 402

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
               C P   TY ILI  M      D+   A ++  +M + G  P   TFN +++GL   
Sbjct: 403 SKNDCFPTSCTYTILICGMCRNGLLDE---ARQIFNQMENLGCSPSIMTFNALIDGLCKA 459

Query: 469 GNQGLAKEILRLQSRCGRLPRQF 491
           G    A+ +   +   G+ P  F
Sbjct: 460 GELEEARHLF-YKMEIGKNPSLF 481



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/367 (28%), Positives = 179/367 (48%), Gaps = 17/367 (4%)

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186
           ++M  L+  P + TF I+       GK D A+K+F  M + G   +   +  IL  LC+ 
Sbjct: 190 NQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQA 249

Query: 187 KKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
           K+ +  + L    +      D I+ N + +G+C + + ++A  +L+     G    +  Y
Sbjct: 250 KRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGY 309

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           + ++ G FRA + +E   +  +M K   E DVV YT ++ GF  VG +  A N+ + M  
Sbjct: 310 SSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQ 369

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G+ P    YNA+I+  C    ++ A  +  E+      P S TY ++I G+C  G ++ 
Sbjct: 370 RGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDE 429

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL-------- 417
           A +   +M++  C P++ T+N LI   C AGE+E    LF KM  G   P+L        
Sbjct: 430 ARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKN-PSLFLRLSQGA 488

Query: 418 ----DTYNILISSMFVRK-KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
               DT +  + +M  R  +S  +L A KLL+++ D G +P   T+N ++NG     N  
Sbjct: 489 DRVMDTAS--LQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNIN 546

Query: 473 LAKEILR 479
            A ++ R
Sbjct: 547 GAFKLFR 553



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 163/364 (44%), Gaps = 18/364 (4%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           PT  T+ I+       G  D A +IF  M   GC  S+ +FN ++D LCK  ++E+A +L
Sbjct: 409 PTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHL 468

Query: 196 F-KVFRGKFKA-------------DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           F K+  GK  +             D  S   +    C      KA ++L ++ D G+ P+
Sbjct: 469 FYKMEIGKNPSLFLRLSQGADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPD 528

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           + TYN+++ G+ +A  I  A++ F E++ +    D VTY T++ GF  V   + A  V D
Sbjct: 529 IMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLD 588

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            MV  G  PS A Y  ++   C+K  +  A  ++ + +         T  +        G
Sbjct: 589 QMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKYLRSLPSQEDETLKLAEEHF-EKG 647

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
           E+E+A+  +  M        +  Y I +   C A   E  L++F  +       N  +  
Sbjct: 648 ELEKAVRCLLEMNFKLNNFEIAPYTIWLIGLCQARRSEEALKIFLVLKECQMDVNPPSCV 707

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481
           +LI+ +    K  +L +A  + +  +++GFM      N++L  L+L      A ++L   
Sbjct: 708 MLINGLC---KDGNLEMAVDIFLYTLEKGFMLMPRICNQLLRSLILQDKMKHALDLLNRM 764

Query: 482 SRCG 485
           +  G
Sbjct: 765 NSAG 768



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 117/297 (39%), Gaps = 73/297 (24%)

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            T+N+V+    +    +  W+   E+K    +I   T++ ++  +   G  ++A   F  
Sbjct: 97  VTHNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGK 156

Query: 303 MVNGGVLPSVATYNAMIQV-----------------------------------LCKKDS 327
           M + G  P V TYN+++ V                                   LCK   
Sbjct: 157 MKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGK 216

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
            ++A+ +F+EM  KG  PN+  Y +++ GLC     +     +  MK   C P+  T N 
Sbjct: 217 TDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNA 276

Query: 388 LIRYFCDAGEIERG---LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD--------- 435
           L+  FC  G+I+     L+LFEK G  +    +  Y+ LI  +F  K+ D+         
Sbjct: 277 LLDGFCKLGQIDEAFALLQLFEKEGYVL---GIKGYSSLIDGLFRAKRYDEVQEWCRKMF 333

Query: 436 ------------LLVAG-----------KLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
                       +L+ G            +L +M  RG  P  + +N ++ G   +G
Sbjct: 334 KAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVG 390



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 38/210 (18%)

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           S  T+N +I +L K D  +    + EE+          T++V+I     +G  E+A+E  
Sbjct: 95  SWVTHNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESF 154

Query: 371 GRMKDDECEPNVQTYN-----------------------------------ILIRYFCDA 395
           G+MKD  C+P+V TYN                                   IL+   C  
Sbjct: 155 GKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKN 214

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
           G+ +  L++F++M      PN   Y I++S +   K++DD+    +LL  M   G  P  
Sbjct: 215 GKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDV---HRLLNTMKVSGCCPDS 271

Query: 456 FTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
            T N +L+G   +G    A  +L+L  + G
Sbjct: 272 ITCNALLDGFCKLGQIDEAFALLQLFEKEG 301



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/209 (19%), Positives = 94/209 (44%)

Query: 135 GPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN 194
            P   T+  + + +    + + A ++   M ++GC  S   +  ++   C++ K+  A++
Sbjct: 561 SPDSVTYGTLIDGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFS 620

Query: 195 LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           L+  +     +       +A          KA+  L EM  +  N  +  Y I L G  +
Sbjct: 621 LWLKYLRSLPSQEDETLKLAEEHFEKGELEKAVRCLLEMNFKLNNFEIAPYTIWLIGLCQ 680

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
           A + EEA + FL +K+ + +++  +   +++G    G ++ A ++F   +  G +     
Sbjct: 681 ARRSEEALKIFLVLKECQMDVNPPSCVMLINGLCKDGNLEMAVDIFLYTLEKGFMLMPRI 740

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGY 343
            N +++ L  +D +++A+ +   M   GY
Sbjct: 741 CNQLLRSLILQDKMKHALDLLNRMNSAGY 769


>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
          Length = 798

 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 181/368 (49%), Gaps = 13/368 (3%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG---CRQSLNSFNTILDLLC 184
           RM  L   P   ++  + +      K+  A+++ L M   G   C  ++ S++TI+D   
Sbjct: 155 RMPELGYTPDVFSYNALIKGLCVEKKSQEALELLLHMTADGGYNCSPNVVSYSTIIDGFF 214

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           KE +V+KAY LF    G+ F  DV++Y+ + +G C  +  NKA  +L+ M D+G+ PN  
Sbjct: 215 KEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFDKGVMPNTR 274

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYNI+++GY   GQ+EEA R   +M     + DVVTY  ++  +  +G    AR+VFD M
Sbjct: 275 TYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSM 334

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           V  G  P+   Y+ ++     K ++ +   + + M+  G       +N++I      G +
Sbjct: 335 VRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAV 394

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           ++A+     M+ +   P+V +Y+ +I   C  G +E  +  F +M S    PN+ ++  L
Sbjct: 395 DKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSL 454

Query: 424 I---SSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           I    S+   KK ++      L  EM++RG  P     N +++ L   G    A++   +
Sbjct: 455 IHGLCSIGEWKKVEE------LAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDM 508

Query: 481 QSRCGRLP 488
               G  P
Sbjct: 509 VIHIGVKP 516



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 164/326 (50%), Gaps = 4/326 (1%)

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186
           ++M S  L P   +F  +     S G+  +  ++   M   G        NTI+D LCKE
Sbjct: 437 NQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKE 496

Query: 187 KKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
            +V +A + F  V     K +V+SYN + +G+C V + +++++    MV  GL P+  TY
Sbjct: 497 GRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTY 556

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           N +L GYF+ G++E+A   + EM ++  +   +T   I+HG    G I  AR ++  MV+
Sbjct: 557 NALLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARELYMKMVD 616

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G    + TYN ++  LC+   V+ A+ +FE++  K +  +  T+N+VI  L   G ++ 
Sbjct: 617 RGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVWTFNIVINALLKVGRIDE 676

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           A      M      P+V TY+++I+   + G +E   +LF  M    C  +    N++I 
Sbjct: 677 AKSLFSAMVLRGPVPHVITYSLMIKSRIEEGLLEESDDLFLSMEKNGCAADSHMLNVIIR 736

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGF 451
            +    +  D+  AG  L ++ ++ F
Sbjct: 737 RLL---EKGDVRRAGTYLTKIDEKNF 759



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 99/400 (24%), Positives = 170/400 (42%), Gaps = 39/400 (9%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM----------------HEHG 168
           L+ +M    L P   T+ ++ + Y   G+   A  +F SM                H + 
Sbjct: 295 LLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYA 354

Query: 169 CRQSLNSFNTILDLL-------------------CKEKKVEKAYNLFKVFR-GKFKADVI 208
            + +L     +LDL+                    K   V+KA   F   R    + DV+
Sbjct: 355 TKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVV 414

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           SY+ + +  C + R   A+    +MV  GL+PN+ ++  ++ G    G+ ++      EM
Sbjct: 415 SYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEM 474

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
             R    D +   TI+      G +  A++ FD +++ GV P+V +YN +I   C    +
Sbjct: 475 INRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKM 534

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           + +I  F+ MV  G  P+S TYN ++ G    G +E AL     M   + +    T NI+
Sbjct: 535 DESIKQFDRMVSIGLRPDSWTYNALLNGYFKNGRVEDALALYREMFRKDVKFCAITSNII 594

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           +     AG I    EL+ KM        ++TYN ++  +      D+ L   ++  ++  
Sbjct: 595 LHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEAL---RMFEDLRS 651

Query: 449 RGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           + F    +TFN V+N LL +G    AK +       G +P
Sbjct: 652 KEFELDVWTFNIVINALLKVGRIDEAKSLFSAMVLRGPVP 691



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 131/259 (50%), Gaps = 1/259 (0%)

Query: 132 LSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEK 191
           + + P   ++  + + Y   GK D ++K F  M   G R    ++N +L+   K  +VE 
Sbjct: 512 IGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNALLNGYFKNGRVED 571

Query: 192 AYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250
           A  L++ +FR   K   I+ N+I +G     R   A E+  +MVDRG    + TYN VL 
Sbjct: 572 ALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLG 631

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
           G      ++EA R F +++ ++ E+DV T+  +++    VG I  A+++F  MV  G +P
Sbjct: 632 GLCENSCVDEALRMFEDLRSKEFELDVWTFNIVINALLKVGRIDEAKSLFSAMVLRGPVP 691

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
            V TY+ MI+   ++  +E +  +F  M   G   +S   NV+IR L   G++ RA  ++
Sbjct: 692 HVITYSLMIKSRIEEGLLEESDDLFLSMEKNGCAADSHMLNVIIRRLLEKGDVRRAGTYL 751

Query: 371 GRMKDDECEPNVQTYNILI 389
            ++ +        T  +LI
Sbjct: 752 TKIDEKNFSVEASTAALLI 770



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 92/179 (51%), Gaps = 7/179 (3%)

Query: 314 TYNAMIQVLCKKDSVENAI-LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
           T N +I+ LC     ++A+ +VF  M   GY P+  +YN +I+GLC   + + ALE +  
Sbjct: 131 TLNQLIKGLCDGKRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLLH 190

Query: 373 MKDD---ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
           M  D    C PNV +Y+ +I  F   GE+++   LF++M      P++ TY+ LI  +  
Sbjct: 191 MTADGGYNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLC- 249

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             K+  +  A  +L  M D+G MP   T+N ++ G   +G    A  +L+  S  G  P
Sbjct: 250 --KAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQP 306


>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 729

 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 113/392 (28%), Positives = 186/392 (47%), Gaps = 6/392 (1%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           S  +F+  I+  ++  + +    L+  M    L  +  T+  +   Y   G    A+ ++
Sbjct: 271 SEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALW 330

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKA-YNLFKVFRGKFKADVISYNVIANGWCLV 220
             M   G   ++ S NTI+   CKE K+  A   L  + +     D+ISYN +  G+C +
Sbjct: 331 EEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRL 390

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
               +A  +L E+  R L+ N+ TYN ++ G  R G +E A +   +M  R    DVVTY
Sbjct: 391 GNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTY 450

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
           T +V+G   +G +  A+  FD M++ G+ P    Y A I    K      A  + EEM+ 
Sbjct: 451 TVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLT 510

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           KG+ P+  TYNV + GLC  G +E A E + +M  D   P+  TY   +    + G +  
Sbjct: 511 KGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENGHLRE 570

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
           G E+F  M S    P + TY +LI +  +  + D    A    +EM ++G +P   T+N 
Sbjct: 571 GREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLD---WAMAYFLEMQEKGVVPNVITYNV 627

Query: 461 VLNGLLLIGNQGLA-KEILRLQSRCGRLPRQF 491
           ++NG   +     A K  + +Q + G  P ++
Sbjct: 628 LINGFCKVRKMDQACKFFIEMQEK-GIFPNKY 658



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 107/454 (23%), Positives = 210/454 (46%), Gaps = 42/454 (9%)

Query: 69  PQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHR 128
           PQL+ +++  +      AL FF  +   P +  S  +F   + +       ++ + ++ R
Sbjct: 105 PQLLIRVLYSIREKPTIALRFFKCVLTQPGFKTSEYAFCAILQILVDNCLMKSAYWVMER 164

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           + S  +         I +  +      + + +F  M  +     + + N IL +L  +  
Sbjct: 165 IISFEMYG-------IVDVLIGGYLNYQCLLVFEKMMRNRFLPDVKNCNRILKILRDKNL 217

Query: 189 VEKAYNLFKVFRGKF--KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
           + KA  ++++  G++  +  V +YN + + +C      +AL+++ +M +RG  P+  T+N
Sbjct: 218 LVKALEVYRMM-GEYGIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFN 276

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
           +++ G  + G++++A     EM K    +   TY  ++ G+   G +  A  +++ MV  
Sbjct: 277 VLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTR 336

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           GV P+VA++N ++   CK+  + +A     +M+ K  MP+  +YN +I G C  G +  A
Sbjct: 337 GVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEA 396

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
              +  ++      N+ TYN LI   C  G++E  L+L E M +    P++ TY +L++ 
Sbjct: 397 FILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNG 456

Query: 427 -------MFVRKKSDDLLVAG-------------------------KLLIEMVDRGFMPR 454
                  +  ++  D++L  G                         KL  EM+ +GF P 
Sbjct: 457 ACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPD 516

Query: 455 KFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             T+N  +NGL  +GN   A E+L+   R G +P
Sbjct: 517 VITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVP 550



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 137/290 (47%), Gaps = 38/290 (13%)

Query: 175 SFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKR---------- 222
           ++NT++D LC+   +E A  L +  + RG    DV++Y V+ NG C +            
Sbjct: 414 TYNTLIDGLCRLGDLETALKLKEDMINRG-IHPDVVTYTVLVNGACKLGNMLMAKEFFDE 472

Query: 223 -------------------------TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
                                    T KA ++ +EM+ +G  P++ TYN+ + G  + G 
Sbjct: 473 MLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGN 532

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           +EEA     +M +     D VTYT+ +H     G ++  R +F  M++ G  P+V TY  
Sbjct: 533 LEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTV 592

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           +I        ++ A+  F EM  KG +PN  TYNV+I G C   +M++A +F   M++  
Sbjct: 593 LIHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGFCKVRKMDQACKFFIEMQEKG 652

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
             PN  TY ILI   C+ G+ +  L L+ +M      P+  T+  L+  +
Sbjct: 653 IFPNKYTYTILINENCNMGKWQEALRLYAQMLGKRIRPDSCTHGALLKKL 702



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/245 (20%), Positives = 113/245 (46%), Gaps = 6/245 (2%)

Query: 102 SPSSFDHAIDLAARLR--DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           +P  F +   +   L+  D    + L   M +    P   T+ +        G  + A +
Sbjct: 479 APDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGE 538

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF--KVFRGKFKADVISYNVIANGW 217
           +   M   G      ++ + +    +   + +   +F   + RG+    V++Y V+ +  
Sbjct: 539 LLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQ-TPTVVTYTVLIHAH 597

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
            L  R + A+    EM ++G+ PN+ TYN+++ G+ +  ++++A +FF+EM+++    + 
Sbjct: 598 ALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGFCKVRKMDQACKFFIEMQEKGIFPNK 657

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
            TYT +++    +G+ + A  ++  M+   + P   T+ A+++ L  KD    A+   E 
Sbjct: 658 YTYTILINENCNMGKWQEALRLYAQMLGKRIRPDSCTHGALLKKL-DKDYKVQAVQFIES 716

Query: 338 MVGKG 342
           ++  G
Sbjct: 717 LILDG 721


>gi|297842914|ref|XP_002889338.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335180|gb|EFH65597.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 712

 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 119/462 (25%), Positives = 214/462 (46%), Gaps = 57/462 (12%)

Query: 78  RLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPT 137
           RL       L FF+ + Y+  ++H   SF   ++   R R+       +  ++  S G  
Sbjct: 79  RLIKVPADGLRFFDWV-YNKGFSHKEQSFFLMLEFLGRARNLNAARNFLFSIEKRSNGCV 137

Query: 138 Q---KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN 194
           +   + F  +   Y +AG    +V +F +M + G   S+ +FN++L +L K  +   A++
Sbjct: 138 KLQDRYFNSLIRSYGNAGLFQESVNLFQTMKKMGISPSVLTFNSLLSILLKRGRTGMAHD 197

Query: 195 LFKVFRGKFKA--DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
           +F   R  +    D  ++N + +G+C     ++A  + KEM     NP++ TYN ++ G 
Sbjct: 198 MFDEMRRTYGVTPDSYTFNTLISGFCKNSMVDQAFTIFKEMELYSCNPDVVTYNTIIDGL 257

Query: 253 FRAGQIEEAWRFFLEMKKRKCEI--DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
            RAG+++ A      M K+   +  ++V+YTT++ G+ +  EI  A  VF  M+  G+ P
Sbjct: 258 CRAGKVKIAHNLLNGMLKKATAVHPNIVSYTTLLRGYCMKQEIDEALLVFHEMLTRGLKP 317

Query: 311 SVATYNAMIQVL------------------------------------CKKDSVENAILV 334
           +  TYN +I+ L                                    C    ++ A+ V
Sbjct: 318 NAVTYNTLIKGLSEAHRYDEIKGFLIGGDAFTTFSPDACTFNILIKAHCDAGHLDAAMKV 377

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD-------DECEPNVQTYNI 387
           F+EM+     P+S +Y+V+IR LC   E ++A      + +       +EC+P    YN+
Sbjct: 378 FQEMLNMKLHPDSASYSVLIRTLCLRNEFDKAETLFNELFEKEVLLGKNECKPLAAAYNL 437

Query: 388 LIRYFCDAGEIERGLELFEK-MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
           +  Y C  G+ ++  ++F + M  G   P+  +Y  LI+ +    K      A +LL+ M
Sbjct: 438 MFEYLCANGKAKQAEKVFRQLMKRGAQDPS--SYRTLITGLCREGK---FKAAYELLVLM 492

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           + R F+P   T+  +++GLL IG   LA + L+   R   LP
Sbjct: 493 LRREFVPDPETYEVLIDGLLKIGEALLAHDTLQRMLRSSYLP 534



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 70/326 (21%), Positives = 142/326 (43%), Gaps = 15/326 (4%)

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
           +  P   TF I+ + +  AG  D A+K+F  M          S++ ++  LC   + +KA
Sbjct: 350 TFSPDACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCLRNEFDKA 409

Query: 193 YNLF------KVFRGK--FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
             LF      +V  GK   K    +YN++    C   +  +A +V ++++ RG   + ++
Sbjct: 410 ETLFNELFEKEVLLGKNECKPLAAAYNLMFEYLCANGKAKQAEKVFRQLMKRGAQ-DPSS 468

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           Y  ++ G  R G+ + A+   + M +R+   D  TY  ++ G   +GE   A +    M+
Sbjct: 469 YRTLITGLCREGKFKAAYELLVLMLRREFVPDPETYEVLIDGLLKIGEALLAHDTLQRML 528

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
               LP   T+++++  L K+    ++  +   M+ K    N       +R +  + + E
Sbjct: 529 RSSYLPVATTFHSVLAELVKRKFANDSFGLLTVMLEKRIRQNIDLSTQAVRLVFSSAQKE 588

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
           +A   V  + D+     ++    L+ + C+  ++     L         + ++DT N +I
Sbjct: 589 KAFLIVRLLYDNGYLIKMEE---LLDFLCENRKLLDAHTLVLFCLEKSQMVDIDTCNTII 645

Query: 425 SSMFVRKKSDDLLVAGKLLIEMVDRG 450
             +   K+  +   A  L  E+V+ G
Sbjct: 646 EGLCKHKRHSE---AFSLYNELVELG 668



 Score = 40.0 bits (92), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 4/112 (3%)

Query: 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFK-ADVI 208
           S+ + ++A  I   ++++G    L     +LD LC+ +K+  A+ L      K +  D+ 
Sbjct: 583 SSAQKEKAFLIVRLLYDNG---YLIKMEELLDFLCENRKLLDAHTLVLFCLEKSQMVDID 639

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
           + N I  G C  KR ++A  +  E+V+ G +  L+ + ++      AG+ EE
Sbjct: 640 TCNTIIEGLCKHKRHSEAFSLYNELVELGNHQQLSCHVVLTNALEAAGKWEE 691


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 109/388 (28%), Positives = 180/388 (46%), Gaps = 53/388 (13%)

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186
           H+M   +  P   TF  +       G+   AV +   M E G + +  ++ TI+D +CK+
Sbjct: 173 HQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKK 232

Query: 187 KKVEKAYNLFKVFR--GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
                A NL +          +V+ Y+ I +  C   R + A  +  EM ++G+ P+L T
Sbjct: 233 GDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFT 292

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           YN ++ G+  +G+  +A +   EM +RK   DVVTY  +++ F   G+   A  ++D M+
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEML 352

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP------------------- 345
             G++P+  TYN+MI   CK+D ++ A  +F  M  KG  P                   
Sbjct: 353 PRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRID 412

Query: 346 ----------------NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
                           N+ TYN +I G C  G++  AL+   +M      P++ T N L+
Sbjct: 413 DGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLL 472

Query: 390 RYFCDAGEIERGLELFEKMG------------SGVCLPNLDTYNILISSMFVRKKSDDLL 437
              CD G+++  LE+F+ M             +GV  P++ TYNILI  +    K    L
Sbjct: 473 DGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGV-EPDVLTYNILICGLINEGK---FL 528

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            A +L  EM  RG +P   T++ +++GL
Sbjct: 529 EAEELYEEMPHRGIVPDTITYSSMIDGL 556



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 170/358 (47%), Gaps = 5/358 (1%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           ++  L L P   TF  +        +   A+  F  M E  CR ++ +F T+++ LC+E 
Sbjct: 139 KITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREG 198

Query: 188 KVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG-LNPNLTTY 245
           ++ +A  L  ++     +   I+Y  I +G C    T  AL +L++M +   + PN+  Y
Sbjct: 199 RIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIY 258

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           + ++    + G+  +A   F EM+++    D+ TY +++ GF   G    A  +   M+ 
Sbjct: 259 SAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLE 318

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
             + P V TYNA+I    K+     A  +++EM+ +G +PN+ TYN +I G C    ++ 
Sbjct: 319 RKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDA 378

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           A +    M    C P+V T+  LI  +C A  I+ G+EL  +M     + N  TYN LI 
Sbjct: 379 AEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIH 438

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
              +     DL  A  L  +M+  G  P   T N +L+GL   G    A E+ +   +
Sbjct: 439 GFCL---VGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQK 493



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 109/416 (26%), Positives = 189/416 (45%), Gaps = 16/416 (3%)

Query: 82  HALKALH-----FFNILSYHPTYAHSPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSL 134
           H +K L      F ++L   P     PS  D    + +  R+     V +L  +M+   +
Sbjct: 55  HEIKGLEDAIDLFSDMLRSRPL----PSVVDFCKLMGVVVRMERPDLVISLYQKMERKQI 110

Query: 135 GPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN 194
                +F I+ + + S  K   A+  F  + + G    + +F T+L  LC E +V +A +
Sbjct: 111 RCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALD 170

Query: 195 LF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
            F ++F    + +V+++  + NG C   R  +A+ +L  M++ GL P   TY  ++ G  
Sbjct: 171 FFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMC 230

Query: 254 RAGQIEEAWRFFLEMKKRKCEI-DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
           + G    A     +M++    I +VV Y+ I+      G    A+N+F  M   G+ P +
Sbjct: 231 KKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDL 290

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            TYN+MI   C      +A  + +EM+ +   P+  TYN +I      G+   A E    
Sbjct: 291 FTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDE 350

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           M      PN  TYN +I  FC    ++   ++F  M +  C P++ T+  LI      K+
Sbjct: 351 MLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKR 410

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            DD +   +LL EM  RG +    T+N +++G  L+G+   A ++ +     G  P
Sbjct: 411 IDDGM---ELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCP 463



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 182/396 (45%), Gaps = 17/396 (4%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           +   ID   +   +     L   M+   + P   T+  +   + S+G+   A ++   M 
Sbjct: 258 YSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEML 317

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKRT 223
           E      + ++N +++   KE K  +A  L+     RG    + I+YN + +G+C   R 
Sbjct: 318 ERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGII-PNTITYNSMIDGFCKQDRL 376

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A ++   M  +G +P++ T+  ++ GY  A +I++      EM +R    + VTY T+
Sbjct: 377 DAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTL 436

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK-- 341
           +HGF +VG++  A ++   M++ GV P + T N ++  LC    +++A+ +F+ M     
Sbjct: 437 IHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKM 496

Query: 342 ---------GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
                    G  P+  TYN++I GL + G+   A E    M      P+  TY+ +I   
Sbjct: 497 DLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGL 556

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
           C    ++   ++F  MGS    PN+ T+N LI+      + DD L   +L  EM  RG +
Sbjct: 557 CKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGL---ELFCEMGRRGIV 613

Query: 453 PRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
                +  ++ G   +GN   A +I +     G  P
Sbjct: 614 ADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYP 649



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 168/339 (49%), Gaps = 5/339 (1%)

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVI 213
           + A+ +F  M       S+  F  ++ ++ + ++ +   +L+ K+ R + + D+ S+N++
Sbjct: 61  EDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNIL 120

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
              +C   +   AL    ++   GL+P++ T+  +L G     ++ EA  FF +M +  C
Sbjct: 121 IKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTC 180

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
             +VVT+TT+++G    G I  A  + D M+  G+ P+  TY  ++  +CKK    +A+ 
Sbjct: 181 RPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALN 240

Query: 334 VFEEMVGKGY-MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
           +  +M    + +PN   Y+ +I  LC  G    A      M++    P++ TYN +I  F
Sbjct: 241 LLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGF 300

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
           C +G      +L ++M      P++ TYN LI++ FV++       A +L  EM+ RG +
Sbjct: 301 CSSGRWSDAEQLLQEMLERKISPDVVTYNALINA-FVKEGK--FFEAAELYDEMLPRGII 357

Query: 453 PRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           P   T+N +++G         A+++  L +  G  P  F
Sbjct: 358 PNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVF 396



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 135/324 (41%), Gaps = 47/324 (14%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+  + + +    + D A  +F  M   GC   + +F T++D  C  K+++    L
Sbjct: 358 PNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMEL 417

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD------------------- 235
             ++ R    A+ ++YN + +G+CLV   N AL++ ++M+                    
Sbjct: 418 LHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCD 477

Query: 236 ---------------------------RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
                                       G+ P++ TYNI++ G    G+  EA   + EM
Sbjct: 478 NGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEM 537

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
             R    D +TY++++ G      +  A  +F  M +    P+V T+N +I   CK   V
Sbjct: 538 PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRV 597

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           ++ + +F EM  +G + ++  Y  +I G    G +  AL+    M      P+  T   +
Sbjct: 598 DDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNM 657

Query: 389 IRYFCDAGEIERGLELFEKMGSGV 412
           +  F    E+ER + + E +   V
Sbjct: 658 LTGFWSKEELERAVAMLEDLQMSV 681



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 113/234 (48%), Gaps = 14/234 (5%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE----------- 166
           D      L  +M S  + P   T   + +     GK   A+++F +M +           
Sbjct: 445 DLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPF 504

Query: 167 HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKRTN 224
           +G    + ++N ++  L  E K  +A  L++    RG    D I+Y+ + +G C   R +
Sbjct: 505 NGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRG-IVPDTITYSSMIDGLCKQSRLD 563

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           +A ++   M  +  +PN+ T+N ++ GY +AG++++    F EM +R    D + Y T++
Sbjct: 564 EATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLI 623

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           +GF  VG I  A ++F  M++ GV P   T   M+     K+ +E A+ + E++
Sbjct: 624 YGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDL 677



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 120/255 (47%), Gaps = 12/255 (4%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+H M    L     T+  +   +   G  + A+ +   M   G    + + NT+LD LC
Sbjct: 417 LLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLC 476

Query: 185 KEKKVEKAYNLFKVFR------------GKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
              K++ A  +FK  +               + DV++YN++  G     +  +A E+ +E
Sbjct: 477 DNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEE 536

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M  RG+ P+  TY+ ++ G  +  +++EA + F+ M  +    +VVT+ T+++G+   G 
Sbjct: 537 MPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGR 596

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           +     +F  M   G++     Y  +I    K  ++  A+ +F+EM+  G  P++ T   
Sbjct: 597 VDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRN 656

Query: 353 VIRGLCHTGEMERAL 367
           ++ G     E+ERA+
Sbjct: 657 MLTGFWSKEELERAV 671



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 95/194 (48%), Gaps = 3/194 (1%)

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
           GF  +  ++ A ++F  M+    LPSV  +  ++ V+ + +  +  I ++++M  K    
Sbjct: 53  GFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRC 112

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           +  ++N++I+  C   ++  AL   G++      P+V T+  L+   C    +   L+ F
Sbjct: 113 DIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFF 172

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            +M    C PN+ T+  L++ +    +   ++ A  LL  M++ G  P + T+  +++G+
Sbjct: 173 HQMFETTCRPNVVTFTTLMNGLCREGR---IVEAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 466 LLIGNQGLAKEILR 479
              G+   A  +LR
Sbjct: 230 CKKGDTVSALNLLR 243


>gi|225453152|ref|XP_002272930.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Vitis vinifera]
          Length = 502

 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 112/441 (25%), Positives = 209/441 (47%), Gaps = 16/441 (3%)

Query: 47  ILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSF 106
           I+ +T   T+ + LH  ++  +P+ V+  +K  +     A+ FF    +     HSP S+
Sbjct: 65  IIANTPSSTVEEVLHDTAIRVSPEDVEDSLKLSYGFPGSAVKFFRWSGHQLNDNHSPYSW 124

Query: 107 DHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE 166
           +  +D+  +   +  +W  V  MK   L  +  TFA I   YV A +   A+  F  M +
Sbjct: 125 NLVVDMLGKNFLFDAMWDAVKSMKKQGL-LSLATFASIFSSYVIADRVREAIMTFDVMEQ 183

Query: 167 HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKA 226
           +GC + + + N++L  +C++ +  +A    +  RG  + D  +Y ++  GW        A
Sbjct: 184 YGCPRDIVALNSLLSAICRDGRTVQAAEFLRNVRGLIRPDADTYAILLEGWESEGNCGAA 243

Query: 227 LEVLKEMV-DRGLNP-NLTTYNIVLKGYFRAGQ-IEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +   EMV D G +P N++ Y+  L           EA +FF  M+ R+C   +  Y   
Sbjct: 244 RQTFDEMVMDIGWDPGNVSAYDSFLNALLHGPDGRREAMKFFEIMRDRQCSPGMRFYRIG 303

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVL-PSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           +       + K A+ ++  M++  +  P    YN+MI + C  D++  A  + +EMV  G
Sbjct: 304 LQECVKTSDSKGAQLLWQTMLSRNICRPDTEMYNSMIALHCSCDNIVMARGMLDEMVCNG 363

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
             P+S TYNV+ R L    ++E A      M  +EC P++   N  +R + D G++ + +
Sbjct: 364 AFPDSETYNVLFRFLIRRRKLEEAFSIFSEMVQNECVPDLTNCNAAVRIYLDLGDVYKAI 423

Query: 403 ELF----EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           +++    E   SG+     +T N+L++ +   +  D +  A K   +M+ RG      T 
Sbjct: 424 KVWKYIIENHDSGL----EETGNLLVTGL---RDHDRIPEAVKYAKDMIVRGIKLTSSTL 476

Query: 459 NRVLNGLLLIGNQGLAKEILR 479
           +++ + L+ +G   +  E+LR
Sbjct: 477 SKLKHALVEVGKGPVYDELLR 497


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 114/416 (27%), Positives = 192/416 (46%), Gaps = 16/416 (3%)

Query: 82  HALKALH-----FFNILSYHPTYAHSPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSL 134
           H +K L      F ++L   P     PS  D    + +  R+     V +L  +M+   +
Sbjct: 55  HEIKGLEDAIDLFSDMLRSRPL----PSVVDFCKLMGVVVRMERPDLVISLYQKMERKQI 110

Query: 135 GPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN 194
                +F I+ + + S  K   A+  F  + + G    + +FNT+L  LC E +V +A N
Sbjct: 111 RCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALN 170

Query: 195 LF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
           LF ++F    + +V+++  + NG C   R  +A+ +L  M++ GL P   TY  ++ G  
Sbjct: 171 LFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMC 230

Query: 254 RAGQIEEAWRFFLEMKKRKCEI-DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
           + G    A     +M++    I +VV Y+ I+      G    A+N+F  M   G+ P +
Sbjct: 231 KIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDL 290

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            TYN+MI   C      +A  + +EM+ +   P+  TYN +I      G+   A E    
Sbjct: 291 FTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDE 350

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           M      PN  TY+ +I  FC    ++    +F  M +  C PNL T+N LI      K+
Sbjct: 351 MLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKR 410

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            DD +   +LL EM + G +    T+N +++G  L+G+   A ++L+     G  P
Sbjct: 411 IDDGM---ELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCP 463



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/389 (26%), Positives = 177/389 (45%), Gaps = 51/389 (13%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L H+M   +  P   TF  +       G+   AV +   M E G + +  ++ TI+D +C
Sbjct: 171 LFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMC 230

Query: 185 KEKKVEKAYNLFKVFR--GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           K      A +L +          +V+ Y+ I +  C   R + A  +  EM ++G+ P+L
Sbjct: 231 KIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDL 290

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TYN ++ G+  +G+  +A +   EM +RK   DVVTY  +++ F   G+   A  ++D 
Sbjct: 291 FTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDE 350

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M+  G++P+  TY++MI   CK++ ++ A  +F  M  KG  PN  T+N +I G C    
Sbjct: 351 MLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKR 410

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGVC-------- 413
           ++  +E +  M +     +  TYN LI  F   G++   L+L ++M  SG+C        
Sbjct: 411 IDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDT 470

Query: 414 -------------------------------------LPNLDTYNILISSMFVRKKSDDL 436
                                                 P++ TYNILIS +    K    
Sbjct: 471 LLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGK---F 527

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           L A +L  EM  RG +P   T++ +++GL
Sbjct: 528 LEAEELYEEMPHRGIVPDTITYSSMIDGL 556



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 154/309 (49%), Gaps = 12/309 (3%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T++ + + +    + D A  +F  M   GC  +L +FNT++D  C  K+++    L
Sbjct: 358 PNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMEL 417

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             ++      AD  +YN + +G+ LV   N AL++L+EM+  GL P++ T + +L G   
Sbjct: 418 LHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCD 477

Query: 255 AGQIEEAWRFFLEMKKRK-----------CEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            G++++A   F  M+K K            E DV TY  ++ G    G+   A  +++ M
Sbjct: 478 NGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEM 537

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            + G++P   TY++MI  LCK+  ++ A  +F+ M  K + PN  T+  +I G C  G +
Sbjct: 538 PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRV 597

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           +  LE    M       N  TY  LI  F   G I   L++F++M S    P+  T   +
Sbjct: 598 DDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNM 657

Query: 424 ISSMFVRKK 432
           ++ ++ +++
Sbjct: 658 LTGLWSKEE 666



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 181/396 (45%), Gaps = 17/396 (4%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           +   ID   +   +     L   M+   + P   T+  +   + S+G+   A ++   M 
Sbjct: 258 YSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEML 317

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKRT 223
           E      + ++N +++   KE K  +A  L+     RG    + I+Y+ + +G+C   R 
Sbjct: 318 ERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGII-PNTITYSSMIDGFCKQNRL 376

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A  +   M  +G +PNL T+N ++ GY  A +I++      EM +     D  TY T+
Sbjct: 377 DAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTL 436

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK-- 341
           +HGF +VG++  A ++   M++ G+ P + T + ++  LC    +++A+ +F+ M     
Sbjct: 437 IHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKK 496

Query: 342 ---------GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
                    G  P+  TYN++I GL + G+   A E    M      P+  TY+ +I   
Sbjct: 497 DLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGL 556

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
           C    ++   ++F+ MGS    PN+ T+  LI+      + DD L   +L  EM  RG +
Sbjct: 557 CKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGL---ELFCEMGRRGIV 613

Query: 453 PRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
               T+  ++ G   +GN   A +I +     G  P
Sbjct: 614 ANAITYITLICGFRKVGNINGALDIFQEMISSGVYP 649



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 152/326 (46%), Gaps = 19/326 (5%)

Query: 63  PSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDYR 120
           P+      ++D   K+  N    A H F +++   T   SP+  +F+  ID     +   
Sbjct: 358 PNTITYSSMIDGFCKQ--NRLDAAEHMFYLMA---TKGCSPNLITFNTLIDGYCGAKRID 412

Query: 121 TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180
               L+H M    L     T+  +   +   G  + A+ +   M   G    + + +T+L
Sbjct: 413 DGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLL 472

Query: 181 DLLCKEKKVEKAYNLFKVFRGKFK------------ADVISYNVIANGWCLVKRTNKALE 228
           D LC   K++ A  +FKV +   K             DV +YN++ +G     +  +A E
Sbjct: 473 DGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEE 532

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           + +EM  RG+ P+  TY+ ++ G  +  +++EA + F  M  +    +VVT+TT+++G+ 
Sbjct: 533 LYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYC 592

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G +     +F  M   G++ +  TY  +I    K  ++  A+ +F+EM+  G  P++ 
Sbjct: 593 KAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTI 652

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMK 374
           T   ++ GL    E++RA+  + +++
Sbjct: 653 TIRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 129/268 (48%), Gaps = 4/268 (1%)

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           + +G+  +K    A+++  +M+     P++  +  ++    R  + +     + +M++++
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
              D+ ++T ++  F    ++  A + F  +   G+ P V T+N ++  LC +D V  A+
Sbjct: 110 IRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEAL 169

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
            +F +M      PN  T+  ++ GLC  G +  A+  + RM +D  +P   TY  ++   
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 393 CDAGEIERGLELFEKMGS-GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
           C  G+    L+L  KM      +PN+  Y+ +I S+    +  D   A  L  EM ++G 
Sbjct: 230 CKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSD---AQNLFTEMQEKGI 286

Query: 452 MPRKFTFNRVLNGLLLIGNQGLAKEILR 479
            P  FT+N ++ G    G    A+++L+
Sbjct: 287 FPDLFTYNSMIVGFCSSGRWSDAEQLLQ 314



 Score = 42.4 bits (98), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 17/170 (10%)

Query: 328 VENAILVFEEMVGKGYMPNSTTY----NVVIRGLCHTGEMER---ALEFVGRMKDDECEP 380
           +E+AI +F +M+    +P+   +     VV+R       MER    +    +M+  +   
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVR-------MERPDLVISLYQKMERKQIRC 112

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAG 440
           ++ ++ ILI+ FC   ++   L  F K+      P++ T+N L+  + V  +  + L   
Sbjct: 113 DIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEAL--- 169

Query: 441 KLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
            L  +M +    P   TF  ++NGL   G    A  +L      G  P Q
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQ 219


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 112/419 (26%), Positives = 191/419 (45%), Gaps = 24/419 (5%)

Query: 83  ALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           AL        L +HPT   + ++  H + +  R+ +      L H+M      P   TF 
Sbjct: 34  ALSTFGKLTKLGFHPTLV-TFNTLLHGLCVEDRVSE---ALDLFHQM----CKPNVVTFT 85

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-- 200
            +       G+   AV +   M E G + +  ++ TI+D +CK      A NL +     
Sbjct: 86  TLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEL 145

Query: 201 GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
              K DV+ Y+ I +G     R   A  +  EM D+G+ P++ TY+ ++ G+  +G+  E
Sbjct: 146 SHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSE 205

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
           A R   EM  RK   DVVT++ +++     G++  A+++   M++ GV P+V T N ++ 
Sbjct: 206 AQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLD 265

Query: 321 VLCKKDSVENAILVFEEM-----------VGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
            LC    +++A+ +F+ M              G  P+  TYN++I GL + G+   A E 
Sbjct: 266 GLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEEL 325

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
              M      P+  TY+ +I   C    ++   ++F+ MGS    PN+ T+N LI+    
Sbjct: 326 YEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCK 385

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
               DD L   +L  EM  RG +    T+  ++ G   +GN   + +I +     G  P
Sbjct: 386 AGMVDDGL---ELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYP 441



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/338 (29%), Positives = 167/338 (49%), Gaps = 18/338 (5%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           +F I+ + + S  K   A+  F  + + G   +L +FNT+L  LC E +V +A +LF   
Sbjct: 17  SFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQM 76

Query: 200 RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
               K +V+++  + NG C   R  +A+ +L  MV+ GL PN  TY  ++ G  + G   
Sbjct: 77  ---CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTV 133

Query: 260 EAWRFFLEMKK-RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
            A     +M++    + DVV Y+ I+ G    G    A+N+F  M + G+ P + TY+ M
Sbjct: 134 SALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCM 193

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           I   C       A  + +EM+ +   P+  T++ +I  L   G++  A + +  M     
Sbjct: 194 INGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGV 253

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV-----------CLPNLDTYNILISSM 427
            PNV T N L+   CD+G+++  LE+F+ M   +             P++ TYNILIS +
Sbjct: 254 CPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGL 313

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
               K    L A +L  EM  RG +P   T++ ++NGL
Sbjct: 314 INEGK---FLEAEELYEEMPHRGIVPDTVTYSSMINGL 348



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 166/341 (48%), Gaps = 13/341 (3%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLS-LGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           ++   +D   ++ D  +   L+ +M+ LS + P    ++ I +     G+   A  +F+ 
Sbjct: 118 TYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIE 177

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKR 222
           M + G    + +++ +++  C   K  +A  L + +   K   DV++++ + N       
Sbjct: 178 MQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGD 237

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID------ 276
            N A ++L+EM+  G+ PN+ T N +L G   +G++++A   F  M+K   +ID      
Sbjct: 238 LNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFN 297

Query: 277 -----VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
                V TY  ++ G    G+   A  +++ M + G++P   TY++MI  LCK+  ++ A
Sbjct: 298 GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEA 357

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
             +F+ M  K + PN  T+N +I G C  G ++  LE    M       N  TY  LIR 
Sbjct: 358 TQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRG 417

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           F   G I   L++F++M S    P+  T   +++ ++ +++
Sbjct: 418 FRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEE 458



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 136/283 (48%), Gaps = 8/283 (2%)

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
           +   D+ S+N++   +C   +   AL    ++   G +P L T+N +L G     ++ EA
Sbjct: 10  QIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEA 69

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
              F +M    C+ +VVT+TT+++G    G +  A  + D MV  G+ P+  TY  ++  
Sbjct: 70  LDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDG 125

Query: 322 LCKKDSVENAILVFEEMVGKGYM-PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
           +CK     +A+ +  +M    ++ P+   Y+ +I GL   G    A      M+D    P
Sbjct: 126 MCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFP 185

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAG 440
           ++ TY+ +I  FC +G+      L ++M      P++ T++ LI+++    K  DL  A 
Sbjct: 186 DIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALV---KEGDLNSAQ 242

Query: 441 KLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
            LL EM+  G  P   T N +L+GL   G    A E+ +   +
Sbjct: 243 DLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQK 285



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 137/293 (46%), Gaps = 12/293 (4%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
            M+   + P   T++ +   + S+GK   A ++   M        + +F+ +++ L KE 
Sbjct: 177 EMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEG 236

Query: 188 KVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM------VD----- 235
            +  A +L + +       +V++ N + +G C   +   ALE+ K M      +D     
Sbjct: 237 DLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAF 296

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
            G+ P++ TYNI++ G    G+  EA   + EM  R    D VTY+++++G      +  
Sbjct: 297 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDE 356

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
           A  +FD M +    P++ T+N +I   CK   V++ + +F EM  +G + N+ TY  +IR
Sbjct: 357 ATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIR 416

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           G    G +  +L+    M      P+  T   ++       E+++ L + E++
Sbjct: 417 GFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKKALAMLEEL 469



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 127/272 (46%), Gaps = 18/272 (6%)

Query: 80  WNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQK 139
           W+ A + L    +    P       +F   I+   +  D  +   L+  M S  + P   
Sbjct: 203 WSEAQRLLQEMLVRKISPDVV----TFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVV 258

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHE-----------HGCRQSLNSFNTILDLLCKEKK 188
           T   + +    +GK   A+++F +M +           +G    + ++N ++  L  E K
Sbjct: 259 TCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGK 318

Query: 189 VEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
             +A  L++    RG    D ++Y+ + NG C   R ++A ++   M  +  +PN+ T+N
Sbjct: 319 FLEAEELYEEMPHRG-IVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFN 377

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
            ++ GY +AG +++    F EM +R    + +TY T++ GF  VG I  + ++F  M++ 
Sbjct: 378 TLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISS 437

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           GV P   T   M+  L  K+ ++ A+ + EE+
Sbjct: 438 GVYPDTITIRNMLTGLWSKEELKKALAMLEEL 469



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 126/262 (48%), Gaps = 12/262 (4%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M    + P   TF+ +    V  G  + A  +   M   G   ++ + NT+LD LC
Sbjct: 209 LLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLC 268

Query: 185 KEKKVEKAYNLFKVFRGKF------------KADVISYNVIANGWCLVKRTNKALEVLKE 232
              K++ A  +FK  +               + DV +YN++ +G     +  +A E+ +E
Sbjct: 269 DSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEE 328

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M  RG+ P+  TY+ ++ G  +  +++EA + F  M  +    ++VT+ T++ G+   G 
Sbjct: 329 MPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGM 388

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           +     +F  M   G++ +  TY  +I+   K  ++  ++ +F+EM+  G  P++ T   
Sbjct: 389 VDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRN 448

Query: 353 VIRGLCHTGEMERALEFVGRMK 374
           ++ GL    E+++AL  +  ++
Sbjct: 449 MLTGLWSKEELKKALAMLEELQ 470


>gi|224139020|ref|XP_002322960.1| predicted protein [Populus trichocarpa]
 gi|222867590|gb|EEF04721.1| predicted protein [Populus trichocarpa]
          Length = 694

 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 176/338 (52%), Gaps = 7/338 (2%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           T+  +   +  AGK   + ++++ M +  C   + S+N  +  L + +KVE+A +++++ 
Sbjct: 327 TYNALLNGFCRAGKIKESFELWVMMGKENCHNVV-SYNIFIRGLFENRKVEEAISVWELL 385

Query: 200 RGKFK-ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
           R +   AD  +Y V+ +G C     NKAL++LKE  D G   +   Y+ ++ G  + G++
Sbjct: 386 RRRGSGADSTTYGVLIHGLCKNGHLNKALKILKEAKDGGDKLDAFAYSSIVDGLSKQGRV 445

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           +EA     +M K  CE+       +++GF    +++ A   F  M   G  P+V +YN +
Sbjct: 446 DEALGIVHQMDKYGCELSPHVCNPLINGFVRASKLEEAICFFREMETKGCSPTVVSYNTL 505

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           I  LCK +   +A    +EM+ K + P+  TY++++ GLC   +++ AL    ++     
Sbjct: 506 INGLCKAERFSDAYSFVKEMLEKDWKPDMITYSLLMDGLCQGKKIDMALNLWRQVLVKGL 565

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
           EP+V  +NIL+   C AG+IE  L L+  M    CLPNL T+N L+  ++   K+ +  +
Sbjct: 566 EPDVTMHNILMHGLCSAGKIEDALLLYSNMKQSNCLPNLVTHNTLMDGLY---KARECEM 622

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG--NQGLA 474
           A  +   M   GF P   ++N  L GL   G  + G+A
Sbjct: 623 ASVIWACMFKNGFQPDIISYNITLKGLCSCGRISDGIA 660



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 114/403 (28%), Positives = 193/403 (47%), Gaps = 19/403 (4%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQK------ 139
           AL  F+  S  P Y HSP  F   + +  RL D + V   VH  + + L  TQK      
Sbjct: 26  ALALFDSASRQPGYTHSPHIF---LLILRRLSDPKLV---VHVTRIVELIKTQKCKCTED 79

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHE-HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV 198
               + + Y  +   + A+  F  M E  GC+  + S+N +L+   +   +EKA +    
Sbjct: 80  VVLTVLKAYAKSKMPNEALDCFQKMEEIFGCKPGIRSYNALLNAFIEANLLEKAESFLAY 139

Query: 199 FRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
           F       ++ +YN++       ++  +A  +L  M  + L P++ +Y  V+ G  ++G 
Sbjct: 140 FETVGILPNLQTYNILIKISVKKRQFVEAKGLLDWMWSKDLKPDVYSYGTVINGMVKSGD 199

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG-VLPSVATYN 316
           +  A   F EM +R    DV+ Y  ++ GF   G+  + + +++ +V G  V P+V TYN
Sbjct: 200 LVSALEVFDEMFERGLVPDVMCYNIMIDGFFKRGDYVQGKEIWERLVKGSCVYPNVVTYN 259

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
            MI  LCK    + ++ ++E M       +  TY+ +I GLC  G ++ A+E    M   
Sbjct: 260 VMINGLCKMGRFDESLEMWERMKKNECEMDLFTYSSLICGLCDVGNVDGAVEVYKEMVKR 319

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
               +V TYN L+  FC AG+I+   EL+  MG   C  N+ +YNI I  +F  +K ++ 
Sbjct: 320 SVVVDVVTYNALLNGFCRAGKIKESFELWVMMGKENC-HNVVSYNIFIRGLFENRKVEEA 378

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           +   +LL     RG      T+  +++GL   G+   A +IL+
Sbjct: 379 ISVWELLRR---RGSGADSTTYGVLIHGLCKNGHLNKALKILK 418



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 159/316 (50%), Gaps = 6/316 (1%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           ++ +  +VW L+ R  S   G    T+ ++       G  ++A+KI     + G +    
Sbjct: 374 KVEEAISVWELLRRRGS---GADSTTYGVLIHGLCKNGHLNKALKILKEAKDGGDKLDAF 430

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISY--NVIANGWCLVKRTNKALEVLKE 232
           ++++I+D L K+ +V++A  +      K+  ++  +  N + NG+    +  +A+   +E
Sbjct: 431 AYSSIVDGLSKQGRVDEALGIVHQM-DKYGCELSPHVCNPLINGFVRASKLEEAICFFRE 489

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M  +G +P + +YN ++ G  +A +  +A+ F  EM ++  + D++TY+ ++ G     +
Sbjct: 490 METKGCSPTVVSYNTLINGLCKAERFSDAYSFVKEMLEKDWKPDMITYSLLMDGLCQGKK 549

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           I  A N++  ++  G+ P V  +N ++  LC    +E+A+L++  M     +PN  T+N 
Sbjct: 550 IDMALNLWRQVLVKGLEPDVTMHNILMHGLCSAGKIEDALLLYSNMKQSNCLPNLVTHNT 609

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           ++ GL    E E A      M  +  +P++ +YNI ++  C  G I  G+ LF+      
Sbjct: 610 LMDGLYKARECEMASVIWACMFKNGFQPDIISYNITLKGLCSCGRISDGIALFDDALKNG 669

Query: 413 CLPNLDTYNILISSMF 428
            LP   T+ IL+ ++ 
Sbjct: 670 ILPTSITWYILVRAVL 685



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/184 (20%), Positives = 78/184 (42%), Gaps = 6/184 (3%)

Query: 85  KALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           +A+ FF  +    T   SP+  S++  I+   +   +   ++ V  M      P   T++
Sbjct: 482 EAICFFREME---TKGCSPTVVSYNTLINGLCKAERFSDAYSFVKEMLEKDWKPDMITYS 538

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-G 201
           ++ +      K D A+ ++  +   G    +   N ++  LC   K+E A  L+   +  
Sbjct: 539 LLMDGLCQGKKIDMALNLWRQVLVKGLEPDVTMHNILMHGLCSAGKIEDALLLYSNMKQS 598

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
               +++++N + +G    +    A  +   M   G  P++ +YNI LKG    G+I + 
Sbjct: 599 NCLPNLVTHNTLMDGLYKARECEMASVIWACMFKNGFQPDIISYNITLKGLCSCGRISDG 658

Query: 262 WRFF 265
              F
Sbjct: 659 IALF 662


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 111/421 (26%), Positives = 178/421 (42%), Gaps = 74/421 (17%)

Query: 117 RDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSF 176
           RD   V  L+  M+ L L P   TF I       AGK D A +IF  M + GC   L ++
Sbjct: 241 RDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTY 300

Query: 177 NTILDLLCKEKKVEKAYNL-------------------------------FKVFRGKFKA 205
             ++D LC   ++E A  L                               FK F  + +A
Sbjct: 301 TVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEA 360

Query: 206 -----DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
                DV+++ ++ +  C  +  ++A      M  +G+ PNL TYN ++ G  RAG+IE+
Sbjct: 361 DGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIED 420

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE---------------------------- 292
           A +    M+    +    TY   +  FG  GE                            
Sbjct: 421 ALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLY 480

Query: 293 -------IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
                  ++ A+ +F+G+   G+ P   TYN M++   K   V+ A+ +  EM+  G  P
Sbjct: 481 SLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEP 540

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           +    N +I  L   G ++ A +   RMKD +  P V TYN L+      G +++ +ELF
Sbjct: 541 DVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELF 600

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           E M    C PN  ++N L+       K+D++ +A K+  +M      P   T+N V+ GL
Sbjct: 601 ESMIEKKCSPNTISFNTLLDCFC---KNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGL 657

Query: 466 L 466
           +
Sbjct: 658 I 658



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 175/370 (47%), Gaps = 4/370 (1%)

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
           R + T++++M+         ++  +    + +G    A++++  M   G + SL +++ +
Sbjct: 174 RQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSAL 233

Query: 180 LDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           +  L K++  E    L K       + +V ++ +         + ++A E+ + M D G 
Sbjct: 234 MVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGC 293

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
            P+L TY +++     AGQ+E A   F++MK    + D V Y T++  F   G++   + 
Sbjct: 294 GPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKE 353

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
            +  M   G +P V T+  ++ VLCK    + A   F+ M  +G +PN  TYN +I GL 
Sbjct: 354 FWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLL 413

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLD 418
             G +E AL+ +G M+    +P   TYNI I YF  +GE  + +E FEKM +   +PN+ 
Sbjct: 414 RAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIV 473

Query: 419 TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
             N   +S++   +   L  A  +   + + G  P   T+N ++     +G    A  +L
Sbjct: 474 ACN---ASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLL 530

Query: 479 RLQSRCGRLP 488
               R G  P
Sbjct: 531 SEMIRNGCEP 540



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 147/296 (49%), Gaps = 1/296 (0%)

Query: 130  KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV 189
            K L + PT  ++  +    +     ++A  +F  M   GC     +FN +L +  K  K+
Sbjct: 780  KKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKI 839

Query: 190  EKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
             + + L+K +   + K D I+YN++ +        +KAL+   ++V     P   TY  +
Sbjct: 840  TELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPL 899

Query: 249  LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
            + G  + G++EEA R F EM    C+ +   +  +++G+G +G+ + A  +F  MVN G+
Sbjct: 900  IDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGI 959

Query: 309  LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
             P + +Y  ++  LC    V+ A+  F E+   G  P+   YN +I GL  +  ME AL 
Sbjct: 960  RPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALA 1019

Query: 369  FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
                M++    P++ TYN L+     AG +E+   ++E++      P++ TYN LI
Sbjct: 1020 LYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALI 1075



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 156/315 (49%), Gaps = 5/315 (1%)

Query: 179  ILDLLCKEKKVEKAYNLFKVFRGKF--KADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
            ++ +LCK K+   AY +F  F  K      + SYN +      V  T KA ++ K+M + 
Sbjct: 758  LVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNV 817

Query: 237  GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
            G  P+  T+N++L  + ++G+I E +  + EM  R+C+ D +TY  ++        + +A
Sbjct: 818  GCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKA 877

Query: 297  RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
             + F  +V+    P+  TY  +I  L K   +E A+ +FEEM   G  PN   +N++I G
Sbjct: 878  LDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILING 937

Query: 357  LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
                G+ E A +   RM ++   P++++Y IL+   C AG ++  L  F ++ S    P+
Sbjct: 938  YGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPD 997

Query: 417  LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKE 476
               YN +I+ +    KS  +  A  L  EM +RG +P  +T+N ++  L L G    AK 
Sbjct: 998  FIAYNRIINGL---GKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKR 1054

Query: 477  ILRLQSRCGRLPRQF 491
            +       G  P  F
Sbjct: 1055 MYEELQLAGLEPDVF 1069



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 165/365 (45%), Gaps = 8/365 (2%)

Query: 116 LRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS 175
           L  ++  W+   +M++    P   TF I+ +    A   D A   F  M + G   +L++
Sbjct: 348 LDTFKEFWS---QMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHT 404

Query: 176 FNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           +NT++  L +  ++E A  L         +    +YN+  + +     T KA+E  ++M 
Sbjct: 405 YNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMK 464

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
            +G+ PN+   N  L      G++ EA   F  +++     D VTY  ++  +  VG++ 
Sbjct: 465 AKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVD 524

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
            A N+   M+  G  P V   N++I  L K   V+ A  +F+ M      P   TYN ++
Sbjct: 525 EAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLL 584

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
            GL   G +++A+E    M + +C PN  ++N L+  FC   E+E  L++F KM    C 
Sbjct: 585 SGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCK 644

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           P++ TYN +I  +    K +            + +   P   T   +L GL+  G  G A
Sbjct: 645 PDVLTYNTVIYGLIKENKVNHAF----WFFHQLKKSMHPDHVTICTLLPGLVKCGQIGDA 700

Query: 475 KEILR 479
             I R
Sbjct: 701 ISIAR 705



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 152/315 (48%), Gaps = 9/315 (2%)

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           Y     +F   +D+  + RD+   +     M+   + P   T+  +    + AG+ + A+
Sbjct: 363 YMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDAL 422

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWC 218
           K+  +M   G + +  ++N  +D   K  +  KA   F+    K KA  I  N++A    
Sbjct: 423 KLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFE----KMKAKGIVPNIVACNAS 478

Query: 219 L-----VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
           L     + R  +A  +   + + GL P+  TYN+++K Y + GQ++EA     EM +  C
Sbjct: 479 LYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGC 538

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
           E DV+   +++      G +  A  +FD M +  + P+V TYN ++  L K+  V+ AI 
Sbjct: 539 EPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIE 598

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           +FE M+ K   PN+ ++N ++   C   E+E AL+   +M   +C+P+V TYN +I    
Sbjct: 599 LFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLI 658

Query: 394 DAGEIERGLELFEKM 408
              ++      F ++
Sbjct: 659 KENKVNHAFWFFHQL 673



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 160/349 (45%), Gaps = 3/349 (0%)

Query: 75   IIKRLWNH--ALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSL 132
            +++ L  H   L A   F+  +     + + +S++  I     +      W L   MK++
Sbjct: 758  LVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNV 817

Query: 133  SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
               P   TF ++   +  +GK     +++  M    C+    ++N ++  L K   ++KA
Sbjct: 818  GCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKA 877

Query: 193  YNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
             + F  +    F+    +Y  + +G   V R  +A+ + +EM D G  PN   +NI++ G
Sbjct: 878  LDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILING 937

Query: 252  YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
            Y + G  E A + F  M       D+ +YT +V    + G +  A   F+ + + G+ P 
Sbjct: 938  YGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPD 997

Query: 312  VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
               YN +I  L K   +E A+ ++ EM  +G +P+  TYN ++  L   G +E+A     
Sbjct: 998  FIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYE 1057

Query: 372  RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
             ++    EP+V TYN LIR +  +   E    +++ M    C PN+ TY
Sbjct: 1058 ELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTY 1106



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 105/447 (23%), Positives = 198/447 (44%), Gaps = 78/447 (17%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            RLR+ +T++   + ++   L P   T+ ++ + Y   G+ D AV +   M  +GC   +
Sbjct: 486 GRLREAKTMF---NGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDV 542

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKE 232
              N+++D L K  +V++A+ +F   +  K    V++YN + +G     R  KA+E+ + 
Sbjct: 543 IVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFES 602

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV-------- 284
           M+++  +PN  ++N +L  + +  ++E A + F +M    C+ DV+TY T++        
Sbjct: 603 MIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENK 662

Query: 285 --HGFGVVGEIKRARN--------VFDGMVNGGVLPSVATY--NAMIQVLCK-------- 324
             H F    ++K++ +        +  G+V  G +    +   + M QV  +        
Sbjct: 663 VNHAFWFFHQLKKSMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWED 722

Query: 325 -------KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH------------------ 359
                  +  ++ AI+  EE+V  G     +    ++R LC                   
Sbjct: 723 LMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKL 782

Query: 360 ------------TGEM------ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
                        GE+      E+A +    MK+  C P+  T+N+L+     +G+I   
Sbjct: 783 GISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITEL 842

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
            EL+++M S  C P+  TYNI+ISS+    KS++L  A     ++V   F P   T+  +
Sbjct: 843 FELYKEMISRRCKPDAITYNIVISSL---AKSNNLDKALDFFYDLVSSDFRPTPRTYGPL 899

Query: 462 LNGLLLIGNQGLAKEILRLQSRCGRLP 488
           ++GL  +G    A  +    S  G  P
Sbjct: 900 IDGLAKVGRLEEAMRLFEEMSDYGCKP 926



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 114/237 (48%), Gaps = 3/237 (1%)

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           V + M  + +  +L TY  + K     G + +      +M+K    ++  +Y  ++H   
Sbjct: 144 VFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLI 203

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G    A  V+  MV+ G+ PS+ TY+A++  L KK   E  +++ +EM   G  PN  
Sbjct: 204 QSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVY 263

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           T+ + IR L   G+++ A E   RM D+ C P++ TY +LI   C+AG++E   ELF KM
Sbjct: 264 TFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKM 323

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            +    P+   Y  L+          DL    +   +M   G+MP   TF  +++ L
Sbjct: 324 KANGHKPDQVIYITLLDKF---NDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVL 377



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 153/338 (45%), Gaps = 5/338 (1%)

Query: 156 RAVKIFLSMHEH-GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF-KADVISYNVI 213
           RA+  F S+ E      +  + N +L+ L    KVE    +F+  + K  + D+ +Y  I
Sbjct: 104 RALSYFYSISEFPTVLHTTETCNFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTI 163

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
                +     +   VL +M   G   N  +YN ++    ++G   EA   +  M     
Sbjct: 164 FKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGL 223

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
           +  + TY+ ++   G   + +    +   M + G+ P+V T+   I+VL +   ++ A  
Sbjct: 224 KPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYE 283

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           +F  M  +G  P+  TY V+I  LC+ G++E A E   +MK +  +P+   Y  L+  F 
Sbjct: 284 IFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFN 343

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
           D G+++   E + +M +   +P++ T+ IL+    V  K+ D   A      M  +G +P
Sbjct: 344 DFGDLDTFKEFWSQMEADGYMPDVVTFTILVD---VLCKARDFDEAFATFDVMRKQGILP 400

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
              T+N ++ GLL  G    A ++L      G  P  +
Sbjct: 401 NLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAY 438



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 93/242 (38%), Gaps = 43/242 (17%)

Query: 81   NHALKALHFFNIL---SYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPT 137
            N+  KAL FF  L    + PT    P ++   ID  A++        L   M      P 
Sbjct: 872  NNLDKALDFFYDLVSSDFRPT----PRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPN 927

Query: 138  QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK 197
               F I+   Y   G  + A ++F  M   G R  L S+  ++D LC   +V++A   F 
Sbjct: 928  CAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFN 987

Query: 198  VFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG------------------- 237
              +      D I+YN I NG    +R  +AL +  EM +RG                   
Sbjct: 988  ELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAG 1047

Query: 238  ----------------LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
                            L P++ TYN +++GY  +   E A+  +  M    C  ++ TY 
Sbjct: 1048 MVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYA 1107

Query: 282  TI 283
             +
Sbjct: 1108 QL 1109


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 112/419 (26%), Positives = 191/419 (45%), Gaps = 24/419 (5%)

Query: 83  ALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           AL        L +HPT   + ++  H + +  R+ +      L H+M      P   TF 
Sbjct: 34  ALSTFGKLTKLGFHPTLV-TFNTLLHGLCVEDRVSE---ALDLFHQM----CKPNVVTFT 85

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-- 200
            +       G+   AV +   M E G + +  ++ TI+D +CK      A NL +     
Sbjct: 86  TLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEL 145

Query: 201 GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
              K DV+ Y+ I +G     R   A  +  EM D+G+ P++ TY+ ++ G+  +G+  E
Sbjct: 146 SHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSE 205

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
           A R   EM  RK   DVVT++ +++     G++  A+++   M++ GV P+V T N ++ 
Sbjct: 206 AQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLD 265

Query: 321 VLCKKDSVENAILVFEEM-----------VGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
            LC    +++A+ +F+ M              G  P+  TYN++I GL + G+   A E 
Sbjct: 266 GLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEEL 325

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
              M      P+  TY+ +I   C    ++   ++F+ MGS    PN+ T+N LI+    
Sbjct: 326 YEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCK 385

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
               DD L   +L  EM  RG +    T+  ++ G   +GN   + +I +     G  P
Sbjct: 386 AGMVDDGL---ELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYP 441



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/338 (29%), Positives = 167/338 (49%), Gaps = 18/338 (5%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           +F I+ + + S  K   A+  F  + + G   +L +FNT+L  LC E +V +A +LF   
Sbjct: 17  SFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQM 76

Query: 200 RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
               K +V+++  + NG C   R  +A+ +L  MV+ GL PN  TY  ++ G  + G   
Sbjct: 77  ---CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTV 133

Query: 260 EAWRFFLEMKK-RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
            A     +M++    + DVV Y+ I+ G    G    A+N+F  M + G+ P + TY+ M
Sbjct: 134 SALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCM 193

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           I   C       A  + +EM+ +   P+  T++ +I  L   G++  A + +  M     
Sbjct: 194 INGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGV 253

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV-----------CLPNLDTYNILISSM 427
            PNV T N L+   CD+G+++  LE+F+ M   +             P++ TYNILIS +
Sbjct: 254 CPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGL 313

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
               K    L A +L  EM  RG +P   T++ ++NGL
Sbjct: 314 INEGK---FLEAEELYEEMPHRGIVPDTVTYSSMINGL 348



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 166/341 (48%), Gaps = 13/341 (3%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLS-LGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           ++   +D   ++ D  +   L+ +M+ LS + P    ++ I +     G+   A  +F+ 
Sbjct: 118 TYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIE 177

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKR 222
           M + G    + +++ +++  C   K  +A  L + +   K   DV++++ + N       
Sbjct: 178 MQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGD 237

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID------ 276
            N A ++L+EM+  G+ PN+ T N +L G   +G++++A   F  M+K   +ID      
Sbjct: 238 LNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFN 297

Query: 277 -----VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
                V TY  ++ G    G+   A  +++ M + G++P   TY++MI  LCK+  ++ A
Sbjct: 298 GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEA 357

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
             +F+ M  K + PN  T+N +I G C  G ++  LE    M       N  TY  LIR 
Sbjct: 358 TQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRG 417

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           F   G I   L++F++M S    P+  T   +++ ++ +++
Sbjct: 418 FRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEE 458



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 136/283 (48%), Gaps = 8/283 (2%)

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
           +   D+ S+N++   +C   +   AL    ++   G +P L T+N +L G     ++ EA
Sbjct: 10  QIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEA 69

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
              F +M    C+ +VVT+TT+++G    G +  A  + D MV  G+ P+  TY  ++  
Sbjct: 70  LDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDG 125

Query: 322 LCKKDSVENAILVFEEMVGKGYM-PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
           +CK     +A+ +  +M    ++ P+   Y+ +I GL   G    A      M+D    P
Sbjct: 126 MCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFP 185

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAG 440
           ++ TY+ +I  FC +G+      L ++M      P++ T++ LI+++    K  DL  A 
Sbjct: 186 DIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALV---KEGDLNSAQ 242

Query: 441 KLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
            LL EM+  G  P   T N +L+GL   G    A E+ +   +
Sbjct: 243 DLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQK 285



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 137/293 (46%), Gaps = 12/293 (4%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
            M+   + P   T++ +   + S+GK   A ++   M        + +F+ +++ L KE 
Sbjct: 177 EMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEG 236

Query: 188 KVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM------VD----- 235
            +  A +L + +       +V++ N + +G C   +   ALE+ K M      +D     
Sbjct: 237 DLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAF 296

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
            G+ P++ TYNI++ G    G+  EA   + EM  R    D VTY+++++G      +  
Sbjct: 297 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDE 356

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
           A  +FD M +    P++ T+N +I   CK   V++ + +F EM  +G + N+ TY  +IR
Sbjct: 357 ATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIR 416

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           G    G +  +L+    M      P+  T   ++       E++R L + E++
Sbjct: 417 GFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRALAMLEEL 469



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 127/272 (46%), Gaps = 18/272 (6%)

Query: 80  WNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQK 139
           W+ A + L    +    P       +F   I+   +  D  +   L+  M S  + P   
Sbjct: 203 WSEAQRLLQEMLVRKISPDVV----TFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVV 258

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHE-----------HGCRQSLNSFNTILDLLCKEKK 188
           T   + +    +GK   A+++F +M +           +G    + ++N ++  L  E K
Sbjct: 259 TCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGK 318

Query: 189 VEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
             +A  L++    RG    D ++Y+ + NG C   R ++A ++   M  +  +PN+ T+N
Sbjct: 319 FLEAEELYEEMPHRG-IVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFN 377

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
            ++ GY +AG +++    F EM +R    + +TY T++ GF  VG I  + ++F  M++ 
Sbjct: 378 TLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISS 437

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           GV P   T   M+  L  K+ ++ A+ + EE+
Sbjct: 438 GVYPDTITIRNMLTGLWSKEELKRALAMLEEL 469



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 126/262 (48%), Gaps = 12/262 (4%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M    + P   TF+ +    V  G  + A  +   M   G   ++ + NT+LD LC
Sbjct: 209 LLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLC 268

Query: 185 KEKKVEKAYNLFKVFRGKF------------KADVISYNVIANGWCLVKRTNKALEVLKE 232
              K++ A  +FK  +               + DV +YN++ +G     +  +A E+ +E
Sbjct: 269 DSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEE 328

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M  RG+ P+  TY+ ++ G  +  +++EA + F  M  +    ++VT+ T++ G+   G 
Sbjct: 329 MPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGM 388

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           +     +F  M   G++ +  TY  +I+   K  ++  ++ +F+EM+  G  P++ T   
Sbjct: 389 VDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRN 448

Query: 353 VIRGLCHTGEMERALEFVGRMK 374
           ++ GL    E++RAL  +  ++
Sbjct: 449 MLTGLWSKEELKRALAMLEELQ 470


>gi|242056423|ref|XP_002457357.1| hypothetical protein SORBIDRAFT_03g005950 [Sorghum bicolor]
 gi|241929332|gb|EES02477.1| hypothetical protein SORBIDRAFT_03g005950 [Sorghum bicolor]
          Length = 543

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 114/440 (25%), Positives = 207/440 (47%), Gaps = 18/440 (4%)

Query: 43  LASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHS 102
           L  L  TS D   L+  L   ++H    ++  ++++  ++   AL FFN  +  P YAH 
Sbjct: 92  LKVLKSTSADNADLSDALRRFAVHMDEDIILTVLQKQRSNWQVALAFFNWAATLPGYAHG 151

Query: 103 PSSFDHAIDLAARLRDYRTVWTLVHRM--KSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
             ++   +D+  R++  R +  L   +  +   +  T K FA++  RY  A K   A+++
Sbjct: 152 SRAYTEMLDILGRMKKVRHMRQLFDEIPEERRVVVVTNKMFAVLLNRYAGAHKVQEAIEV 211

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV 220
           F    ++G    L  F  +L  LC+ K VE+A  LF+  + +F     S+N+I NGWC+ 
Sbjct: 212 FYLRKDYGFELDLVGFQILLMSLCRYKHVEEAEALFREKKDEFPHVTKSWNIILNGWCVK 271

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
                A  +  +++   +  +L TY   +    + G+I  A + F +M +     DV   
Sbjct: 272 GSLRDAQRIWNDIIASKVERDLFTYGTFINALAKNGRISAAVKLFKKMWETGINPDVAIC 331

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
             I+        I  A  +F  M +      VATYN +I+ LCKK  +E    + ++M  
Sbjct: 332 NCIIDQLCFKNRIPEALEIFGEMNDRLCQADVATYNTLIKYLCKKKRMEKVYELLDDMEA 391

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           KG  PN+ TY+ V++    T + +  +  + RM+   CE +  TYN+++  + +  + E+
Sbjct: 392 KGCSPNNRTYSYVLKT---TEKPKDVIALMQRMEQTGCELDSDTYNLILNLYTN-WKYEK 447

Query: 401 GLEL----FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
           G++      E+ GSG   P+  ++ I++  +  + K D+ L   +    M  RG +P   
Sbjct: 448 GVQQVWDEMERNGSG---PDQRSFTIMVHGLHSQGKLDEAL---QYYTTMKSRGMIPEPR 501

Query: 457 TFNRVLNGLLLIGNQGLAKE 476
           T  ++L   + +   G A E
Sbjct: 502 T--KILVKAMHMKKDGAATE 519


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 106/367 (28%), Positives = 176/367 (47%), Gaps = 4/367 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  I+   ++++    + L+  +K  +L         I       G   RA ++F  M
Sbjct: 409 TYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEM 468

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
              G + ++  + TI+  L KE + E+A  +  V + +    DV  YN +  G+C   + 
Sbjct: 469 ISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKM 528

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +    L EM+ +GL PN+ TY   + GY RAG+++ A R F+EM       + V  T +
Sbjct: 529 EEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDL 588

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G+   G   +A   F  M++ GVLP V T++ +I  L K   ++ A+ VF E++ KG 
Sbjct: 589 IDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGL 648

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
           +P+  TY  +I  LC  G+++ A E    M      PN+ TYN LI   C  GEI +  E
Sbjct: 649 VPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARE 708

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           LF+ +       N  TY+ +I+      KS +L  A +L   M   G  P  F +  +++
Sbjct: 709 LFDGIPEKGLARNSVTYSTIIAGYC---KSANLTEAFQLFHGMKLVGVPPDSFVYCALID 765

Query: 464 GLLLIGN 470
           G    GN
Sbjct: 766 GCCKAGN 772



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 101/389 (25%), Positives = 170/389 (43%), Gaps = 39/389 (10%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+  +   Y   GK +    +   M E GC  +L +++ ++  LC+   V++A  L
Sbjct: 230 PDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALEL 289

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            +    K    D   Y  + +G+C  KR+ +   +L EM   GL P+   Y  ++ G+ +
Sbjct: 290 KRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVK 349

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
              I  A++   EM  RK +++  TY  ++HG   +G++++A ++F  M   G+ P + T
Sbjct: 350 QSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQT 409

Query: 315 YN-----------------------------------AMIQVLCKKDSVENAILVFEEMV 339
           YN                                   A++  LC    +  A  +F+EM+
Sbjct: 410 YNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMI 469

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             G  PN   Y  +++GL   G  E A++ +G MKD    P+V  YN +I  FC AG++E
Sbjct: 470 SWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKME 529

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
            G     +M +    PN+ TY   I       ++ ++  A +  IEM+D G  P      
Sbjct: 530 EGKSYLVEMIAKGLKPNVYTYGAFIHGYC---RAGEMQAAERSFIEMLDSGIAPNDVICT 586

Query: 460 RVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            +++G    GN   A    R     G LP
Sbjct: 587 DLIDGYCKDGNTTKAFAKFRCMLDQGVLP 615



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 186/413 (45%), Gaps = 41/413 (9%)

Query: 103 PSSFDHAIDLAARLR--DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P+   +++ +A   R  D      L   M +  L P    +A + + +    ++     +
Sbjct: 265 PNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSM 324

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL-FKVFRGKFKADVISYNVIANGWCL 219
              M+  G +    ++  +++   K+  +  A+ +  ++F  K K +  +Y  + +G C 
Sbjct: 325 LDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCK 384

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
           +    KA ++  EM   G+ P++ TYN +++GY++   +E+A+   +E+KK     +   
Sbjct: 385 IGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYM 444

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
              IV+G    G++ RA  +F  M++ G+ P++  Y  +++ L K+   E AI +   M 
Sbjct: 445 CGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMK 504

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            +G  P+   YN VI G C  G+ME    ++  M     +PNV TY   I  +C AGE++
Sbjct: 505 DQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQ 564

Query: 400 RGLELF-EKMGSGVC----------------------------------LPNLDTYNILI 424
                F E + SG+                                   LP++ T+++LI
Sbjct: 565 AAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLI 624

Query: 425 SSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
             +    K+  L  A  +  E++D+G +P  FT+  +++ L   G+   A E+
Sbjct: 625 HGL---SKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFEL 674



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 119/468 (25%), Positives = 195/468 (41%), Gaps = 60/468 (12%)

Query: 68  TPQLVDQIIKRLWNHALKALH-FFNILSYHPTYAHSPSSFD-------------HAIDLA 113
            P +V  +IK+      K LH FFN ++    ++ + S+F              +A ++ 
Sbjct: 71  NPDVVFLVIKQNQVIDPKRLHGFFNWVNSRTVFSQNLSTFSILSLILCNSGLFGNAANVL 130

Query: 114 ARLRDYR--------TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
            R+ D R        ++      +   S   +   F I+ + Y   G  + AV +FL   
Sbjct: 131 ERMIDTRNPHVKILDSIIKCYKEINGSSSSSSVVVFEILIDIYRKKGFLNEAVSVFLGAK 190

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNK 225
            +     L   N++   L K  +VE  + ++K   G    DV +Y  + N +C V +  +
Sbjct: 191 TNEFIVGLACCNSLSKDLLKGNRVELFWKVYKGMLGAIVPDVYTYTNLINAYCRVGKVEE 250

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
              VL +M ++G  PNL TY++V+ G  RAG ++EA      M  +    D   Y T++ 
Sbjct: 251 GKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLID 310

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
           GF         +++ D M   G+ P    Y A+I    K+  +  A  V EEM  +    
Sbjct: 311 GFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKL 370

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR--------------- 390
           N+ TY  +I GLC  G++E+A +    M     +P++QTYN LI                
Sbjct: 371 NTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELL 430

Query: 391 ------------YFCDA--------GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
                       Y C A        G++ R  ELF++M S    PN+  Y  ++  +   
Sbjct: 431 IEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKE 490

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
            + ++   A K+L  M D+G  P  F +N V+ G    G     K  L
Sbjct: 491 GRFEE---AIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYL 535



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 106/398 (26%), Positives = 179/398 (44%), Gaps = 45/398 (11%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L   M S  L P    +  I +  V  G+ + A+KI   M + G    +  +NT++   C
Sbjct: 464 LFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFC 523

Query: 185 KEKKVE--KAYNLFKVFRGKFKADVISYNVIANGWCLVKR-------------------- 222
           K  K+E  K+Y +  + +G  K +V +Y    +G+C                        
Sbjct: 524 KAGKMEEGKSYLVEMIAKG-LKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPND 582

Query: 223 ---------------TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
                          T KA    + M+D+G+ P++ T+++++ G  + G+++EA   F E
Sbjct: 583 VICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSE 642

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           +  +    DV TYT+++      G++K A  + D M   G+ P++ TYNA+I  LCK   
Sbjct: 643 LLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGE 702

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
           +  A  +F+ +  KG   NS TY+ +I G C +  +  A +    MK     P+   Y  
Sbjct: 703 IAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCA 762

Query: 388 LIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
           LI   C AG  E+ L LF  M   G+   +   +N LI   F   K   L+ A +L+ +M
Sbjct: 763 LIDGCCKAGNTEKALSLFLGMVEEGI--ASTPAFNALIDGFF---KLGKLIEAYQLVEDM 817

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI-LRLQSR 483
           VD    P   T+  ++     +GN   A+++ + +Q R
Sbjct: 818 VDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKR 855



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 158/344 (45%), Gaps = 5/344 (1%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
            M    + P       + + Y   G   +A   F  M + G    + + + ++  L K  
Sbjct: 572 EMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNG 631

Query: 188 KVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
           K+++A  +F     K    DV +Y  + +  C       A E+  +M  +G+NPN+ TYN
Sbjct: 632 KLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYN 691

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
            ++ G  + G+I +A   F  + ++    + VTY+TI+ G+     +  A  +F GM   
Sbjct: 692 ALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLV 751

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           GV P    Y A+I   CK  + E A+ +F  MV +G + ++  +N +I G    G++  A
Sbjct: 752 GVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEG-IASTPAFNALIDGFFKLGKLIEA 810

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
            + V  M D+   PN  TY ILI Y C  G I+   +LF +M     +PN+ TY  L+  
Sbjct: 811 YQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHG 870

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
                +  ++     L  EMV RG  P    ++ +++  L  GN
Sbjct: 871 YNRIGRRSEMF---SLFDEMVARGIKPDDLAWSVMVDAHLKEGN 911



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 164/344 (47%), Gaps = 7/344 (2%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
            M +  L P   T+      Y  AG+   A + F+ M + G   +      ++D  CK+ 
Sbjct: 537 EMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDG 596

Query: 188 KVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
              KA+  F+    +    DV +++V+ +G     +  +A+ V  E++D+GL P++ TY 
Sbjct: 597 NTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYT 656

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
            ++    + G ++ A+    +M K+    ++VTY  +++G   +GEI +AR +FDG+   
Sbjct: 657 SLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEK 716

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G+  +  TY+ +I   CK  ++  A  +F  M   G  P+S  Y  +I G C  G  E+A
Sbjct: 717 GLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKA 776

Query: 367 LE-FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           L  F+G +  +E   +   +N LI  F   G++    +L E M      PN  TY ILI 
Sbjct: 777 LSLFLGMV--EEGIASTPAFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIE 834

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
                    ++  A +L +EM  R  MP   T+  +L+G   IG
Sbjct: 835 ---YHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIG 875



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 144/304 (47%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  I+   +L +      L   +    L     T++ I   Y  +     A ++F  M
Sbjct: 689 TYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGM 748

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTN 224
              G       +  ++D  CK    EKA +LF     +  A   ++N + +G+  + +  
Sbjct: 749 KLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTPAFNALIDGFFKLGKLI 808

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           +A +++++MVD  + PN  TY I+++ +   G I+EA + F+EM+KR    +V+TYT+++
Sbjct: 809 EAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLL 868

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
           HG+  +G      ++FD MV  G+ P    ++ M+    K+ +   A+ + ++M+ +G  
Sbjct: 869 HGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVN 928

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
                Y ++I  LC    +   L+ +  ++    + ++ T   L+  F  AG  +  L +
Sbjct: 929 VCKNLYTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCFHRAGRTDEALRV 988

Query: 405 FEKM 408
            E M
Sbjct: 989 LESM 992



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/253 (19%), Positives = 99/253 (39%), Gaps = 37/253 (14%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           + L H MK + + P    +  + +    AG  ++A+ +FL M E G   S  +FN ++D 
Sbjct: 742 FQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGI-ASTPAFNALIDG 800

Query: 183 LCKEKKVEKAYNL---------------------FKVFRGKFKA---------------D 206
             K  K+ +AY L                     +    G  K                +
Sbjct: 801 FFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPN 860

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           V++Y  + +G+  + R ++   +  EMV RG+ P+   +++++  + + G   +A +   
Sbjct: 861 VLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVD 920

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           +M      +    YT ++        +     V D +   G   S+AT   ++    +  
Sbjct: 921 DMLSEGVNVCKNLYTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCFHRAG 980

Query: 327 SVENAILVFEEMV 339
             + A+ V E MV
Sbjct: 981 RTDEALRVLESMV 993


>gi|297807171|ref|XP_002871469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317306|gb|EFH47728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 602

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 124/491 (25%), Positives = 219/491 (44%), Gaps = 42/491 (8%)

Query: 35  PAAAD--PAALASLILTSTDPRTLTQTLHC-------------------PSLHWTPQLVD 73
           PAA D  P  +  L  + TD  T++  L                     PSL    QLV 
Sbjct: 50  PAAHDSTPHQITVLDFSKTDLSTISNLLENTNVVPGSSLESALDETGIEPSL----QLVQ 105

Query: 74  QIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVH---RMK 130
            +  RL +  +     F      P +  SPS FD  I+   + R++   W+LV    R  
Sbjct: 106 ALFDRLSSSPMLLHSVFKWAEMKPGFTLSPSLFDSVINSLCKAREFEIAWSLVFDRVRSD 165

Query: 131 SLSLGPTQKTFAIIAERYVSAGKADRAVKI--FLSMHEHGCRQS--LNSFNTILDLLCKE 186
             S   +  TF ++  RY  AG   +A++   F   +E  C+ +  L     +LD LCKE
Sbjct: 166 EGSNLVSADTFIVLIRRYARAGMVQQAIRAFEFARSYEPVCKSASELKLLEVLLDALCKE 225

Query: 187 KKVEKAYNLFKVFRGKFKADVIS----YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
             V +A    +  RG   ++ +     +N++ NGW   ++  +A ++ +EM    + P +
Sbjct: 226 GYVREASVYLERRRGMMDSNWVPSVRIFNILLNGWFRSRKLKQAEKLWEEMKAMNVKPTV 285

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TY  +++GY R  ++E A     EMK  + E+  + +  I+ G G  G +  A  + + 
Sbjct: 286 VTYGTLIEGYCRMRRVEIAMEILEEMKMAEMELTFMVFNPIIDGLGEAGRLSEALGMMER 345

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
                  P++ TYN++++  CK   +  A  + + M+ +G  P ++TYN   +      +
Sbjct: 346 FFVCESGPTIVTYNSLVKNFCKAGDLPGASKILKMMMTRGVEPTTSTYNHFFKYFSKHNK 405

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
            E  +    ++ +    P+  TY+++++  C+ G++   +++ ++M +    P+L T  +
Sbjct: 406 TEEGMNLYFKLIEAGHSPDRLTYHLILKMLCEDGKLSLAIQVNKEMKNRGIDPDLLTTTM 465

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           L   M +  + D L  A +     V RG +P+  TF  + NGL   G   +AK   RL S
Sbjct: 466 L---MHLLCRLDMLEEAFEEFDNAVRRGIIPQYITFKMIDNGLRSKGMTDMAK---RLSS 519

Query: 483 RCGRLPRQFKL 493
               LP   KL
Sbjct: 520 LMSSLPHSKKL 530


>gi|326531326|dbj|BAK05014.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 537

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 111/398 (27%), Positives = 186/398 (46%), Gaps = 20/398 (5%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLG--PTQKTFAI 143
           AL FF   +  PTY H P ++   +D+  R++  R +  L   +     G   T + FA+
Sbjct: 129 ALLFFTWAAGLPTYEHGPRTYIEMLDILGRMKKVRLMRQLFDEIPEQRRGLVVTNRMFAV 188

Query: 144 IAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF 203
           +  RY  A K   A++IF   +++G    L  F  +L  LC+ K VE+A  LF   + +F
Sbjct: 189 LLNRYAGAHKVQEAIEIFYKRNDYGFEVDLVGFQILLMSLCRYKHVEEAEALFLQKKDEF 248

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
              + S+N+I NGWC+      A  V  E++   L P+L TY   +    +AG++  A +
Sbjct: 249 PPVIKSWNIILNGWCVKGSLPDAKRVWNEIIASKLKPDLFTYGTFINALTKAGKLSTAVK 308

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
            F  M ++    DV     I+       +I  A  +F  M + G    VATYN +I+  C
Sbjct: 309 LFTSMWEKGINPDVAICNCIIDQLCFKKKIPEALKIFGEMNDRGCQADVATYNTLIKHFC 368

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER-ALEFVGRMKDDECEPNV 382
           K    E    + ++M  KG  PN+ TY  +++    T E  R  +  + RM++  C+ + 
Sbjct: 369 KIRRTEKVYELLDDMEKKGCSPNNMTYTYILK----TTEKPRDVMNLIQRMEESGCKLDS 424

Query: 383 QTYNILIRYFCDAGEIERGL----ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
            TYN+++  +  + + E+G+    E  E+ GSG   P+  ++ I++  +  + + D  L 
Sbjct: 425 DTYNLILNLYV-SMKYEKGVQQVWEEMERNGSG---PDQRSFTIMVHGLHSQGQLDQAL- 479

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKE 476
             +    M  RG  P   T  R+L   + I   G   E
Sbjct: 480 --QYYTTMKSRGMTPEPRT--RILVKAIHIKKGGPETE 513


>gi|242073234|ref|XP_002446553.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
 gi|241937736|gb|EES10881.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
          Length = 381

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 162/330 (49%), Gaps = 7/330 (2%)

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKR 222
           M   GC  ++ ++N I+D +C+E  V++A  L      +  K + ++YN +  G C ++R
Sbjct: 7   MRAEGCEPNVVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGLCSIER 66

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
              A E+L EMV     PN  T N+++    R G +++  R+  +M K  C  +VVTY  
Sbjct: 67  WVDAEELLDEMVRENCPPNEATVNVIVNTLSRKGLLQKVTRYLEKMSKHGCTANVVTYNA 126

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++ G    G +  A  +   M + G  P + TYN +++ LC  D  E+A  +  +M    
Sbjct: 127 VISGMCEQGHVDSALELLSNMQSFGCKPDIVTYNTLLKGLCSADQWEDAEELMIKMSQND 186

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
            +P++ T+N +I  LC  G + +A E   +M +  C PN  TY+ +I     AG++E+ L
Sbjct: 187 CLPDNVTFNTIISFLCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLAKAGKMEQAL 246

Query: 403 ELFEKMGSGVCLPNLD-TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
           EL  +M S     N D  Y +L  S+    K D +    +++ ++ D G  P+   FN V
Sbjct: 247 ELLNEMASKG--YNTDKMYQLLTESL---NKEDKIEEVVQVVHKLQDSGISPQTVLFNTV 301

Query: 462 LNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           L  L   G    A ++L      G +P + 
Sbjct: 302 LLVLCRNGKTDYAIDVLADMVSYGCMPDEL 331



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/361 (28%), Positives = 170/361 (47%), Gaps = 6/361 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M++    P   T+ +I +     G  D+A ++  S+   GC+ +  ++NT+L  LC
Sbjct: 3   LIDLMRAEGCEPNVVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGLC 62

Query: 185 K-EKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
             E+ V+    L ++ R     +  + NVI N         K    L++M   G   N+ 
Sbjct: 63  SIERWVDAEELLDEMVRENCPPNEATVNVIVNTLSRKGLLQKVTRYLEKMSKHGCTANVV 122

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN V+ G    G ++ A      M+   C+ D+VTY T++ G     + + A  +   M
Sbjct: 123 TYNAVISGMCEQGHVDSALELLSNMQSFGCKPDIVTYNTLLKGLCSADQWEDAEELMIKM 182

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
                LP   T+N +I  LC+K  +  A  VF++M  KG  PNSTTY+ +I GL   G+M
Sbjct: 183 SQNDCLPDNVTFNTIISFLCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLAKAGKM 242

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           E+ALE +  M       + + Y +L        +IE  +++  K+      P    +N +
Sbjct: 243 EQALELLNEMASKGYNTD-KMYQLLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLFNTV 301

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL-RLQS 482
           +  +    K+D    A  +L +MV  G MP + T+  ++ GL   G    A+E++ RL S
Sbjct: 302 LLVLCRNGKTD---YAIDVLADMVSYGCMPDELTYIILIEGLSYEGYLQEARELVSRLCS 358

Query: 483 R 483
           R
Sbjct: 359 R 359



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 128/252 (50%), Gaps = 3/252 (1%)

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
           +E++  M   G  PN+ TYN+++    R G +++A      +  R C+ + V Y T++ G
Sbjct: 1   MELIDLMRAEGCEPNVVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKG 60

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
              +     A  + D MV     P+ AT N ++  L +K  ++      E+M   G   N
Sbjct: 61  LCSIERWVDAEELLDEMVRENCPPNEATVNVIVNTLSRKGLLQKVTRYLEKMSKHGCTAN 120

Query: 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
             TYN VI G+C  G ++ ALE +  M+   C+P++ TYN L++  C A + E   EL  
Sbjct: 121 VVTYNAVISGMCEQGHVDSALELLSNMQSFGCKPDIVTYNTLLKGLCSADQWEDAEELMI 180

Query: 407 KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
           KM    CLP+  T+N +IS  F+ +K   +L A ++  +M ++G  P   T++ ++ GL 
Sbjct: 181 KMSQNDCLPDNVTFNTIIS--FLCQKG-LILQAFEVFKQMPEKGCNPNSTTYSTIIGGLA 237

Query: 467 LIGNQGLAKEIL 478
             G    A E+L
Sbjct: 238 KAGKMEQALELL 249



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 150/328 (45%), Gaps = 4/328 (1%)

Query: 92  ILSYHPTYAHSPSSFDHAIDLAA--RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149
           +L+  P+    P++ ++   L     +  +     L+  M   +  P + T  +I     
Sbjct: 38  LLNSLPSRGCKPNTVNYNTVLKGLCSIERWVDAEELLDEMVRENCPPNEATVNVIVNTLS 97

Query: 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVI 208
             G   +  +    M +HGC  ++ ++N ++  +C++  V+ A  L    +    K D++
Sbjct: 98  RKGLLQKVTRYLEKMSKHGCTANVVTYNAVISGMCEQGHVDSALELLSNMQSFGCKPDIV 157

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           +YN +  G C   +   A E++ +M      P+  T+N ++    + G I +A+  F +M
Sbjct: 158 TYNTLLKGLCSADQWEDAEELMIKMSQNDCLPDNVTFNTIISFLCQKGLILQAFEVFKQM 217

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
            ++ C  +  TY+TI+ G    G++++A  + + M + G   +   Y  + + L K+D +
Sbjct: 218 PEKGCNPNSTTYSTIIGGLAKAGKMEQALELLNEMASKG-YNTDKMYQLLTESLNKEDKI 276

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           E  + V  ++   G  P +  +N V+  LC  G+ + A++ +  M    C P+  TY IL
Sbjct: 277 EEVVQVVHKLQDSGISPQTVLFNTVLLVLCRNGKTDYAIDVLADMVSYGCMPDELTYIIL 336

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPN 416
           I      G ++   EL  ++ S   L N
Sbjct: 337 IEGLSYEGYLQEARELVSRLCSRDVLSN 364


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 101/361 (27%), Positives = 171/361 (47%), Gaps = 4/361 (1%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M S  + P   T+ I+       G    A+ I   M   GC  ++ ++NT++    +  +
Sbjct: 141 MLSDGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGE 200

Query: 189 VEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           V+ A  L   +  G  K +++++N + NG C   +   A +V  EM+  GL P+  +YN 
Sbjct: 201 VDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNT 260

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ GY +AG   EA   F EM ++    DVVT+T+++H     G ++ A  +   M   G
Sbjct: 261 LVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERG 320

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           +  +  T+ A+I   CKK  +++A+L    M      P+   YN +I G C  G M+ A 
Sbjct: 321 LQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEAR 380

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           E +  M+    +P+V TY+ +I  +C   +     EL ++M     LP+  TY+ LI  +
Sbjct: 381 ELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVL 440

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
              K+  D   A  L   M+  G  P +FT+  +++G    GN   A  +     + G L
Sbjct: 441 CEEKRLSD---AHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVL 497

Query: 488 P 488
           P
Sbjct: 498 P 498



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 170/347 (48%), Gaps = 4/347 (1%)

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
           +   +++  M+    GP   T+  +   +  AG+ D A ++   M + G + +L +FN++
Sbjct: 167 KEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSM 226

Query: 180 LDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           ++ +CK  K+E A  +F ++ R     D +SYN +  G+C    +++AL V  EM  +G+
Sbjct: 227 VNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGI 286

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
            P++ T+  ++    +AG +E A     +M++R  +++ VT+T ++ GF   G +  A  
Sbjct: 287 MPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALL 346

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
              GM    + PSV  YNA+I   C    ++ A  +  EM  KG  P+  TY+ +I   C
Sbjct: 347 AVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYC 406

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLD 418
              +   A E   +M +    P+  TY+ LIR  C+   +     LF+ M      P+  
Sbjct: 407 KNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEF 466

Query: 419 TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           TY  LI       K  ++  A  L  +MV  G +P   T++ ++NGL
Sbjct: 467 TYTSLIDG---HCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGL 510



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 163/307 (53%), Gaps = 4/307 (1%)

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIAN 215
           A + F SM   G   ++ ++N ++  LC     ++A ++ +  RG     +V++YN +  
Sbjct: 134 ARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVA 193

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
            +      + A  ++  M+D GL PNL T+N ++ G  +AG++E+A + F EM +     
Sbjct: 194 AFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAP 253

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
           D V+Y T+V G+   G    A +VF  M   G++P V T+ ++I V+CK  ++E A+ + 
Sbjct: 254 DGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLV 313

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
            +M  +G   N  T+  +I G C  G ++ AL  V  M+    +P+V  YN LI  +C  
Sbjct: 314 RQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMV 373

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
           G ++   EL  +M +    P++ TY+ +IS+     K+ D   A +L  +M+++G +P  
Sbjct: 374 GRMDEARELLHEMEAKGLKPDVVTYSTIISAYC---KNCDTHSAFELNQQMLEKGVLPDA 430

Query: 456 FTFNRVL 462
            T++ ++
Sbjct: 431 ITYSSLI 437



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/430 (23%), Positives = 189/430 (43%), Gaps = 65/430 (15%)

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
           A ++ D R V+     M    L P   ++  +   Y  AG +  A+ +F  M + G    
Sbjct: 233 AGKMEDARKVFD---EMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPD 289

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLK 231
           + +F +++ ++CK   +E A  L +  R +  + + +++  + +G+C     + AL  ++
Sbjct: 290 VVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVR 349

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
            M    + P++  YN ++ GY   G+++EA     EM+ +  + DVVTY+TI+  +    
Sbjct: 350 GMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNC 409

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
           +   A  +   M+  GVLP   TY+++I+VLC++  + +A ++F+ M+  G  P+  TY 
Sbjct: 410 DTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYT 469

Query: 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR--------------------- 390
            +I G C  G +ERAL    +M      P+V TY++LI                      
Sbjct: 470 SLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHE 529

Query: 391 -------------YFCDAGEIERGLELFEKMGSGVCLP------------------NLD- 418
                        + C   E++  L L +    G C+                   NLD 
Sbjct: 530 EPIPANTKYDALMHCCRKAELKSVLALLK----GFCMKGLMNEADKVYQSMLDRNWNLDG 585

Query: 419 -TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
             Y++LI       ++ +++ A     +M+ RGF P   +   ++ GL   G    A ++
Sbjct: 586 SVYSVLIHG---HCRAGNVMKALSFHKQMLQRGFAPNSTSTISLIRGLFENGMVVEADQV 642

Query: 478 LRLQSRCGRL 487
           ++    C  L
Sbjct: 643 IQQLLNCCSL 652



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/344 (21%), Positives = 145/344 (42%), Gaps = 19/344 (5%)

Query: 126 VHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185
           V  M+   + P+   +  +   Y   G+ D A ++   M   G +  + +++TI+   CK
Sbjct: 348 VRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCK 407

Query: 186 EKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
                 A+ L + +       D I+Y+ +    C  KR + A  + K M+  GL P+  T
Sbjct: 408 NCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFT 467

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           Y  ++ G+ + G +E A     +M K     DVVTY+ +++G         A+ +   + 
Sbjct: 468 YTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLY 527

Query: 305 NGGVLPSVATYNAMIQV---------------LCKKDSVENAILVFEEMVGKGYMPNSTT 349
           +   +P+   Y+A++                  C K  +  A  V++ M+ + +  + + 
Sbjct: 528 HEEPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSV 587

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
           Y+V+I G C  G + +AL F  +M      PN  +   LIR   + G +    ++ +++ 
Sbjct: 588 YSVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTISLIRGLFENGMVVEADQVIQQLL 647

Query: 410 SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
           +   L + +    LI         D +L    +L  M   G +P
Sbjct: 648 NCCSLADAEASKALIDLNLNEGNVDAVL---DVLHGMAKDGLLP 688



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 4/228 (1%)

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           G  P++  YN VL     A  +  A RFF  M       +V TY  ++      G  K A
Sbjct: 111 GYVPSVLAYNAVLLALSDA-SLTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEA 169

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
            ++   M   G  P+V TYN ++    +   V+ A  +   M+  G  PN  T+N ++ G
Sbjct: 170 LSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNG 229

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
           +C  G+ME A +    M  +   P+  +YN L+  +C AG     L +F +M     +P+
Sbjct: 230 MCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPD 289

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           + T+  LI  M    K+ +L  A  L+ +M +RG    + TF  +++G
Sbjct: 290 VVTFTSLIHVMC---KAGNLEWAVTLVRQMRERGLQMNEVTFTALIDG 334



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 144/310 (46%), Gaps = 20/310 (6%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+H M++  L P   T++ I   Y        A ++   M E G      ++++++ +LC
Sbjct: 382 LLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLC 441

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           +EK++  A+ LFK + +   + D  +Y  + +G C      +AL +  +MV  G+ P++ 
Sbjct: 442 EEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVV 501

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKK-----------------RKCEIDVVTYTTIVHG 286
           TY++++ G  ++ +  EA +   ++                   RK E+  V    ++ G
Sbjct: 502 TYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELKSVL--ALLKG 559

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
           F + G +  A  V+  M++       + Y+ +I   C+  +V  A+   ++M+ +G+ PN
Sbjct: 560 FCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRGFAPN 619

Query: 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
           ST+   +IRGL   G +  A + + ++ +     + +    LI    + G ++  L++  
Sbjct: 620 STSTISLIRGLFENGMVVEADQVIQQLLNCCSLADAEASKALIDLNLNEGNVDAVLDVLH 679

Query: 407 KMGSGVCLPN 416
            M     LP+
Sbjct: 680 GMAKDGLLPS 689


>gi|125561029|gb|EAZ06477.1| hypothetical protein OsI_28715 [Oryza sativa Indica Group]
          Length = 621

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 172/344 (50%), Gaps = 5/344 (1%)

Query: 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
           L P    +      Y  AG    A ++F+ M   GC ++  ++  +L  L     V +A 
Sbjct: 103 LAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAM 162

Query: 194 NLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
            +F   R    A D   Y  + +G C   RT +A  +L+E +  G  PN+  YN ++ GY
Sbjct: 163 TVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGY 222

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
             AG++E A + F  M   +C  +V TYT ++HG    G+++RA  +F  MV  G+ P+V
Sbjct: 223 CNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNV 282

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            TY A+IQ  C +  ++ A  +   M   G +PN  T++V+I  LC   ++E A  F+G 
Sbjct: 283 VTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGS 342

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           +     + N   Y  LI   C  G+I+   EL +KM S   +P+  +Y+ LI  +  +KK
Sbjct: 343 LVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKK 402

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL-IGNQGLAK 475
              L  A  +L +M+++G      T+  +++ L+  +G++G  K
Sbjct: 403 ---LSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKK 443



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 157/336 (46%), Gaps = 37/336 (11%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P    +  + + Y +AG+ + A+K+F  M  + C  ++ ++  ++  LCK  KVE+A  L
Sbjct: 210 PNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVL 269

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F ++     + +V++Y  +  G C       A  +L  M   GL PN  T+++++    +
Sbjct: 270 FSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCK 329

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
             ++EEA  F   + K+  +++ V YT+++ G    G+I  A  +   M++ G +P   +
Sbjct: 330 REKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHS 389

Query: 315 YNAMIQVLCKKDSVENAIL-----------------------------------VFEEMV 339
           Y+++I  LC++  +  A L                                   +F++M+
Sbjct: 390 YSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMI 449

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             G  P+  TY V +R  C  G ME A   + +M D    PN+ TYN LIR + + G + 
Sbjct: 450 ATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVS 509

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
           +    FE M      PN D+Y +L+  + V+K S D
Sbjct: 510 QAFSTFEVMVGKGWKPNEDSYTVLL-RLVVKKSSSD 544



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 87/257 (33%), Positives = 126/257 (49%), Gaps = 3/257 (1%)

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           +Y  + N +CL      A + L  ++  GL P+   Y   + GY RAG +  A R F+ M
Sbjct: 74  TYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLM 133

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
             R C     TYT ++HG    G ++ A  VF GM      P    Y  M+  LC+    
Sbjct: 134 PLRGCLRTAFTYTALLHGLLGAGMVREAMTVFVGMRADSCAPDTHVYATMVHGLCEAGRT 193

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           E A ++ EE +  G+ PN   YN +I G C+ GEME AL+    M  + C PNV+TY  L
Sbjct: 194 EEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTEL 253

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           I   C +G++ER + LF +M      PN+ TY  LI     +     L  A +LL  M  
Sbjct: 254 IHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQG---QCNEGHLQCAFRLLHLMET 310

Query: 449 RGFMPRKFTFNRVLNGL 465
            G +P  +TF+ +++ L
Sbjct: 311 NGLVPNDWTFSVLIDAL 327



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 132/268 (49%), Gaps = 3/268 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L  RM    L P   T+  + +   + G    A ++   M  +G   +  +F+ ++D LC
Sbjct: 269 LFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALC 328

Query: 185 KEKKVEKAYNLF--KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           K +KVE+A  LF   + +   K + + Y  + +G C   + + A E++++M+  G  P+ 
Sbjct: 329 KREKVEEA-QLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDA 387

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            +Y+ ++ G  R  ++ +A     +M ++  +   VTYT I+         +  + +FD 
Sbjct: 388 HSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDK 447

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M+  G+ P + TY   ++  C++  +E+A  +  +MV +G  PN  TYN +IRG  + G 
Sbjct: 448 MIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGL 507

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIR 390
           + +A      M     +PN  +Y +L+R
Sbjct: 508 VSQAFSTFEVMVGKGWKPNEDSYTVLLR 535



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/323 (21%), Positives = 147/323 (45%), Gaps = 48/323 (14%)

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
           +  + L+H M++  L P   TF+++ +      K + A     S+ + G + +   + ++
Sbjct: 299 QCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSL 358

Query: 180 LDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           +D LCK  K++ A  L  K+    F  D  SY+ + +G C  K+ ++A  +L++M+++G+
Sbjct: 359 IDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGI 418

Query: 239 -----------------------------------NPNLTTYNIVLKGYFRAGQIEEAWR 263
                                              NP++ TY + ++ Y   G++E+A  
Sbjct: 419 QASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAES 478

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
             ++M  R    ++VTY T++ G+  +G + +A + F+ MV  G  P+  +Y  +++++ 
Sbjct: 479 MIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVV 538

Query: 324 KKDSVENAI------------LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
           KK S +N++            ++ E++  +     +  Y+  IR LC    +E A  F  
Sbjct: 539 KKSSSDNSVDIWKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFM 598

Query: 372 RMKDDECEPNVQTYNILIRYFCD 394
            M++    P+   Y  +I    D
Sbjct: 599 GMQNANLTPSEDVYTSIIDCCAD 621



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/235 (21%), Positives = 101/235 (42%), Gaps = 18/235 (7%)

Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           AHS SS    ID   R +       ++  M    +  +  T+ II +  V    ++   K
Sbjct: 387 AHSYSSL---IDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKK 443

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF--KVFRGKFKADVISYNVIANGW 217
           IF  M   G    + ++   +   C+E ++E A ++    V RG F  ++++YN +  G+
Sbjct: 444 IFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFP-NLVTYNTLIRGY 502

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA---WR---------FF 265
             +   ++A    + MV +G  PN  +Y ++L+   +    + +   W+           
Sbjct: 503 ANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLL 562

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
            ++ +R+  +    Y+  +     V  ++ A++ F GM N  + PS   Y ++I 
Sbjct: 563 EDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSIID 617


>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 115/422 (27%), Positives = 191/422 (45%), Gaps = 18/422 (4%)

Query: 85  KALHFFNILSY----HPTYA------HSPSS--FDHAIDLAARLRDYRTVWTLVHRMKSL 132
           KAL  FN  +Y    H +++      H  SS     A  L  RL   R   +L+ ++   
Sbjct: 21  KALLLFNTATYQGLQHTSHSISFILNHLLSSGMLPQAQSLILRLISGRIPSSLMLQLTQA 80

Query: 133 SLGPT---QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV 189
              P       +  I   YV +   D+A+     M   G     N+FN ++ LL +    
Sbjct: 81  HFTPCLTYTPLYDTIVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLMCLLIRSNYF 140

Query: 190 EKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL 249
           +KA+ +F   + K   D  S+ ++  G C      K   +L  + + GL+PN+  Y  ++
Sbjct: 141 DKAWWIFNELKSKVVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLI 200

Query: 250 KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
            G  + G +  A   F +M +     +  TY+ +++GF   G  +    +++ M   G++
Sbjct: 201 DGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIV 260

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           P+   YN +I   C    V+ A  VF EM  KG      TYN++I GLC   +   A++ 
Sbjct: 261 PNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKL 320

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
           V ++      PN+ TYNILI  FCD G+++  + LF ++ S    P L TYN LI+    
Sbjct: 321 VHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAG--- 377

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPR 489
             K ++L  A  L+ EM +R   P K T+  +++    +     A E+  L  + G +P 
Sbjct: 378 YSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPD 437

Query: 490 QF 491
            +
Sbjct: 438 VY 439



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 174/367 (47%), Gaps = 6/367 (1%)

Query: 90  FNILSYHPTYAHSPSS--FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
           F +L+    +  SP+   +   ID   +  +      L  +M  L L P   T++++   
Sbjct: 178 FRLLAMLEEFGLSPNVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNG 237

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKAD 206
           +   G      +++ +M   G   +  ++N ++   C    V+KA+ +F   R K     
Sbjct: 238 FFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACG 297

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           V++YN++  G C  K+  +A++++ ++   GL+PN+ TYNI++ G+   G+++ A R F 
Sbjct: 298 VMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFN 357

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           ++K       +VTY T++ G+  V  +  A ++   M    + PS  TY  +I    + +
Sbjct: 358 QLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLN 417

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
             E A  +   M   G +P+  TY+V+I GLC  G M+ A +    + +   +PN   YN
Sbjct: 418 YTEKACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYN 477

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            +I  +C  G   R L L  +M     +PN+ ++   I  +   +K  +   A  LL +M
Sbjct: 478 TMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTIGLLCRDEKWKE---AELLLGQM 534

Query: 447 VDRGFMP 453
           ++ G  P
Sbjct: 535 INSGLKP 541



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 148/306 (48%), Gaps = 3/306 (0%)

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
           R  + +   MK   + P    +  +   Y + G  D+A K+F  M E G    + ++N +
Sbjct: 245 REGFQMYENMKRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNIL 304

Query: 180 LDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           +  LC+ KK  +A  L  KV +     ++++YN++ NG+C V + + A+ +  ++   GL
Sbjct: 305 IGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGL 364

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
           +P L TYN ++ GY +   +  A     EM++R      VTYT ++  F  +   ++A  
Sbjct: 365 SPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNYTEKACE 424

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
           +   M   G++P V TY+ +I  LC   +++ A  +F+ +      PNS  YN +I G C
Sbjct: 425 MHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYC 484

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC-DAGEIERGLELFEKMGSGVCLPNL 417
             G   RAL  +  M      PNV ++   I   C D    E  L L + + SG+  P++
Sbjct: 485 KEGSSYRALRLLNEMVHSGMVPNVASFCSTIGLLCRDEKWKEAELLLGQMINSGL-KPSV 543

Query: 418 DTYNIL 423
             Y ++
Sbjct: 544 SLYKMV 549



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 108/244 (44%), Gaps = 36/244 (14%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            R + +     LVH++  + L P   T+ I+   +   GK D AV++F  +   G   +L
Sbjct: 309 CRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTL 368

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKE 232
            ++NT++    K + +  A +L K    +  A   ++Y ++ + +  +  T KA E+   
Sbjct: 369 VTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNYTEKACEMHSL 428

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF----- 287
           M   GL P++ TY++++ G    G ++EA + F  + +   + + V Y T++HG+     
Sbjct: 429 MEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGS 488

Query: 288 --------------GVVGEI----------------KRARNVFDGMVNGGVLPSVATYNA 317
                         G+V  +                K A  +   M+N G+ PSV+ Y  
Sbjct: 489 SYRALRLLNEMVHSGMVPNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKPSVSLYKM 548

Query: 318 MIQV 321
           + +V
Sbjct: 549 VHKV 552


>gi|356497996|ref|XP_003517841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 600

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 172/378 (45%), Gaps = 39/378 (10%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
            V  +K +       T   I       G +  A+     M E  C   + +++ ++D LC
Sbjct: 175 FVDHLKDMGYESDSYTCGAITNGLCKVGHSSAALSYLKKMEEKNCNLDVTAYSGVVDGLC 234

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K+  V +A NLF    GK  + D+ +YN + +G C   R  +A  +L  M+ +G+ P++ 
Sbjct: 235 KDGMVFEALNLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQ 294

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           T+N++   +F+ G I  A   F  M     E DVVTYT+I+    ++ ++K A  VFD M
Sbjct: 295 TFNVIAGRFFKTGMISRAKSIFSFMVHMGIEHDVVTYTSIIGAHCMLNQMKDAMEVFDLM 354

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           ++ G LP++ TY ++I   C+  ++  A+    EMV  G  PN  T++ +I G+C  G+ 
Sbjct: 355 ISKGCLPNIVTYTSLIHGWCETKNMNKAMYFLGEMVNNGLDPNVVTWSTLIGGVCKAGKP 414

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYF------------------------------- 392
             A E    M      PN+QT  I++                                  
Sbjct: 415 VAAKELFLVMHKHGQLPNLQTCAIILDGLFKCNFHSEAMSLFRELEKMNWDLNIIIYNII 474

Query: 393 ----CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
               C +G++   LELF  + S     ++ TYNI+I  +      DD   A  LL++M +
Sbjct: 475 LDGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMIKGLCKEGLLDD---AEDLLMKMEE 531

Query: 449 RGFMPRKFTFNRVLNGLL 466
            G  P + T+N  + GLL
Sbjct: 532 NGCPPNECTYNVFVQGLL 549



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 167/374 (44%), Gaps = 40/374 (10%)

Query: 95  YHPTYAHSP----SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVS 150
           YH      P      F+    + A+++ Y T  +L+  M  + + PT  T  I+      
Sbjct: 71  YHKMVTMKPFPCVKDFNLLFSIVAKMKHYTTAISLIKHMSYIGVKPTVHTLNIVINCLCR 130

Query: 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVIS 209
              A     +   M + G   S+ +FNTI++ LC E  V +A       +   +++D  +
Sbjct: 131 LSHAVFGFSVLGLMFKIGVEPSIVTFNTIVNGLCVEGNVAQAIRFVDHLKDMGYESDSYT 190

Query: 210 YNVIANGWCLVKRTNKALEVLK-----------------------------------EMV 234
              I NG C V  ++ AL  LK                                   +M 
Sbjct: 191 CGAITNGLCKVGHSSAALSYLKKMEEKNCNLDVTAYSGVVDGLCKDGMVFEALNLFSQMT 250

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
            +G+ P+L TYN ++ G     + +EA      M ++    DV T+  I   F   G I 
Sbjct: 251 GKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIAGRFFKTGMIS 310

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
           RA+++F  MV+ G+   V TY ++I   C  + +++A+ VF+ M+ KG +PN  TY  +I
Sbjct: 311 RAKSIFSFMVHMGIEHDVVTYTSIIGAHCMLNQMKDAMEVFDLMISKGCLPNIVTYTSLI 370

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
            G C T  M +A+ F+G M ++  +PNV T++ LI   C AG+     ELF  M     L
Sbjct: 371 HGWCETKNMNKAMYFLGEMVNNGLDPNVVTWSTLIGGVCKAGKPVAAKELFLVMHKHGQL 430

Query: 415 PNLDTYNILISSMF 428
           PNL T  I++  +F
Sbjct: 431 PNLQTCAIILDGLF 444



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 151/323 (46%), Gaps = 37/323 (11%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           ++    L+  M    + P  +TF +IA R+   G   RA  IF  M   G    + ++ +
Sbjct: 274 WKEAAPLLANMMRKGIMPDVQTFNVIAGRFFKTGMISRAKSIFSFMVHMGIEHDVVTYTS 333

Query: 179 ILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           I+   C   +++ A  +F +   K    ++++Y  + +GWC  K  NKA+  L EMV+ G
Sbjct: 334 IIGAHCMLNQMKDAMEVFDLMISKGCLPNIVTYTSLIHGWCETKNMNKAMYFLGEMVNNG 393

Query: 238 LNPNLTTYN-----------------------------------IVLKGYFRAGQIEEAW 262
           L+PN+ T++                                   I+L G F+     EA 
Sbjct: 394 LDPNVVTWSTLIGGVCKAGKPVAAKELFLVMHKHGQLPNLQTCAIILDGLFKCNFHSEAM 453

Query: 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322
             F E++K   +++++ Y  I+ G    G++  A  +F  + + GV   V TYN MI+ L
Sbjct: 454 SLFRELEKMNWDLNIIIYNIILDGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMIKGL 513

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
           CK+  +++A  +  +M   G  PN  TYNV ++GL    ++ ++ +++  MKD   + + 
Sbjct: 514 CKEGLLDDAEDLLMKMEENGCPPNECTYNVFVQGLLRRYQISKSTKYLMFMKDKGFQADA 573

Query: 383 QTYNILIRYFCDAGEIERGLELF 405
            T   LI YF  A +  R LE+F
Sbjct: 574 TTTKFLINYF-SANKENRALEVF 595



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 97/438 (22%), Positives = 174/438 (39%), Gaps = 82/438 (18%)

Query: 96  HPTYAHSPSSFDHAIDLA-----ARLRDYRTV---WTLVHRMKSLSLGPTQKTFAIIAER 147
           HP+++ S  SF    D +       +R+ ++V       H+M ++   P  K F ++   
Sbjct: 33  HPSHSSSTFSFVSDSDTSRAQFLDSMRNAKSVDVALDFYHKMVTMKPFPCVKDFNLLFSI 92

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV-FRGKFKAD 206
                    A+ +   M   G + ++++ N +++ LC+       +++  + F+   +  
Sbjct: 93  VAKMKHYTTAISLIKHMSYIGVKPTVHTLNIVINCLCRLSHAVFGFSVLGLMFKIGVEPS 152

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           ++++N I NG C+     +A+  +  + D G   +  T   +  G  + G    A  +  
Sbjct: 153 IVTFNTIVNGLCVEGNVAQAIRFVDHLKDMGYESDSYTCGAITNGLCKVGHSSAALSYLK 212

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           +M+++ C +DV  Y+ +V G                                   LCK  
Sbjct: 213 KMEEKNCNLDVTAYSGVVDG-----------------------------------LCKDG 237

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            V  A+ +F +M GKG  P+  TYN +I GLC+    + A   +  M      P+VQT+N
Sbjct: 238 MVFEALNLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFN 297

Query: 387 ILIRYFCDAGEIER-----------------------------------GLELFEKMGSG 411
           ++   F   G I R                                    +E+F+ M S 
Sbjct: 298 VIAGRFFKTGMISRAKSIFSFMVHMGIEHDVVTYTSIIGAHCMLNQMKDAMEVFDLMISK 357

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
            CLPN+ TY  LI      K  +    A   L EMV+ G  P   T++ ++ G+   G  
Sbjct: 358 GCLPNIVTYTSLIHGWCETKNMNK---AMYFLGEMVNNGLDPNVVTWSTLIGGVCKAGKP 414

Query: 472 GLAKEILRLQSRCGRLPR 489
             AKE+  +  + G+LP 
Sbjct: 415 VAAKELFLVMHKHGQLPN 432


>gi|297823811|ref|XP_002879788.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325627|gb|EFH56047.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 867

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 115/418 (27%), Positives = 193/418 (46%), Gaps = 19/418 (4%)

Query: 81  NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKT 140
           N   KAL FFN +      A     F   I+   +  +      +  RMKS+ + P+   
Sbjct: 359 NELGKALDFFNRME-EEGLAPDKVMFSVMIEWFCKNMEMEKAVEIYKRMKSVGIAPSSVL 417

Query: 141 FAIIAERYVSAGKADRAVKIFLSMHE----HG--CRQSLNSFNTILDLLCKEKKVEKAYN 194
              + +  + A   + A++IF    E    HG  C       N I  LLCK+ KV+ A +
Sbjct: 418 VHKMIQGCLKAESPEAALEIFNDSFETWIAHGFMC-------NKIFLLLCKQGKVDAATS 470

Query: 195 LFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
             ++   K  + +V+ YN +    C +K  + A  +  EM+++GL PN  TY+I++ G+F
Sbjct: 471 FLRMMENKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLQPNNFTYSILIDGFF 530

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP-SV 312
           +    + AW    +M     E + V Y TI++G   VG+  +A+ +   ++         
Sbjct: 531 KNQDEQNAWEVINQMIASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMGC 590

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            +YN++I    K+   ++A+  + EM   G  PN  T+  +I G C +  M+ ALE +  
Sbjct: 591 TSYNSIIDGFFKEGDTDSAVEAYREMSENGISPNVVTFTSLINGFCKSNRMDLALEMIHE 650

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           MK  + + +V  Y  LI  FC   +++    LF ++     +PN+  YN LIS      K
Sbjct: 651 MKSKDLKLDVPAYGALIDGFCKKNDMKTAYTLFSELLELGLMPNVSVYNNLISGFRNLGK 710

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQ 490
            D    A  L  +MV+ G     FT+  +++GLL  GN  LA ++       G +P +
Sbjct: 711 MD---AAIDLYKKMVNDGISCDLFTYTTMIDGLLKDGNLILASDLYSELLALGIVPDE 765



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 168/352 (47%), Gaps = 5/352 (1%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           R+++     ++   M    L P   T++I+ + +        A ++   M       +  
Sbjct: 496 RMKNMDLARSIFSEMLEKGLQPNNFTYSILIDGFFKNQDEQNAWEVINQMIASNFEANEV 555

Query: 175 SFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
            +NTI++ LCK  +  KA  + +  +   ++     SYN I +G+     T+ A+E  +E
Sbjct: 556 IYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMGCTSYNSIIDGFFKEGDTDSAVEAYRE 615

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M + G++PN+ T+  ++ G+ ++ +++ A     EMK +  ++DV  Y  ++ GF    +
Sbjct: 616 MSENGISPNVVTFTSLINGFCKSNRMDLALEMIHEMKSKDLKLDVPAYGALIDGFCKKND 675

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           +K A  +F  ++  G++P+V+ YN +I        ++ AI ++++MV  G   +  TY  
Sbjct: 676 MKTAYTLFSELLELGLMPNVSVYNNLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTT 735

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           +I GL   G +  A +    +      P+   Y +L+      G+  R  ++ E+M    
Sbjct: 736 MIDGLLKDGNLILASDLYSELLALGIVPDEILYVVLVNGLSKKGQFVRASKMLEEMKKKD 795

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
             PN+  Y+ +I+      +  +L  A ++  EM+++G +     FN +++G
Sbjct: 796 ATPNVLIYSTVIAG---HHREGNLNEAFRVHDEMLEKGLVHDDTIFNLLVSG 844



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 168/389 (43%), Gaps = 33/389 (8%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGP-TQKTFAIIAERYVSAGKADRAVKIFLSM 164
           F  A+  A +++D      L+  M+     P +Q+T+  +    V  G  + AVK+   M
Sbjct: 277 FSLAVQAACKMKDLVMALDLLREMREKGGVPASQETYTSVIVACVKEGNMEEAVKVKDEM 336

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
              G   S+ +  +++   C   ++ KA + F ++       D + ++V+   +C     
Sbjct: 337 VGFGIPMSVIAATSLITGFCNGNELGKALDFFNRMEEEGLAPDKVMFSVMIEWFCKNMEM 396

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            KA+E+ K M   G+ P+    + +++G  +A   E A   F +  +          T I
Sbjct: 397 EKAVEIYKRMKSVGIAPSSVLVHKMIQGCLKAESPEAALEIFNDSFE----------TWI 446

Query: 284 VHGFGV---------VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
            HGF            G++  A +    M N G+ P+V  YN M+   C+  +++ A  +
Sbjct: 447 AHGFMCNKIFLLLCKQGKVDAATSFLRMMENKGIEPNVVFYNNMMLAHCRMKNMDLARSI 506

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
           F EM+ KG  PN+ TY+++I G     + + A E + +M     E N   YN +I   C 
Sbjct: 507 FSEMLEKGLQPNNFTYSILIDGFFKNQDEQNAWEVINQMIASNFEANEVIYNTIINGLCK 566

Query: 395 AGEIERGLELF-----EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
            G+  +  E+      EK  S  C     +YN +I   F    +D  + A +   EM + 
Sbjct: 567 VGQTSKAKEMLQNLIKEKRYSMGCT----SYNSIIDGFFKEGDTDSAVEAYR---EMSEN 619

Query: 450 GFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           G  P   TF  ++NG        LA E++
Sbjct: 620 GISPNVVTFTSLINGFCKSNRMDLALEMI 648



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 153/331 (46%), Gaps = 39/331 (11%)

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP-NL 242
           +E+K E+A  +F+ V     + D + +++     C +K    AL++L+EM ++G  P + 
Sbjct: 251 RERKPEEAMKIFRRVMSRGAEPDGLLFSLAVQAACKMKDLVMALDLLREMREKGGVPASQ 310

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TY  V+    + G +EEA +   EM      + V+  T+++ GF    E+ +A + F+ 
Sbjct: 311 ETYTSVIVACVKEGNMEEAVKVKDEMVGFGIPMSVIAATSLITGFCNGNELGKALDFFNR 370

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG------ 356
           M   G+ P    ++ MI+  CK   +E A+ +++ M   G  P+S   + +I+G      
Sbjct: 371 MEEEGLAPDKVMFSVMIEWFCKNMEMEKAVEIYKRMKSVGIAPSSVLVHKMIQGCLKAES 430

Query: 357 ----------------------------LCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
                                       LC  G+++ A  F+  M++   EPNV  YN +
Sbjct: 431 PEAALEIFNDSFETWIAHGFMCNKIFLLLCKQGKVDAATSFLRMMENKGIEPNVVFYNNM 490

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           +   C    ++    +F +M      PN  TY+ILI   F   K+ D   A +++ +M+ 
Sbjct: 491 MLAHCRMKNMDLARSIFSEMLEKGLQPNNFTYSILIDGFF---KNQDEQNAWEVINQMIA 547

Query: 449 RGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
             F   +  +N ++NGL  +G    AKE+L+
Sbjct: 548 SNFEANEVIYNTIINGLCKVGQTSKAKEMLQ 578



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 123/241 (51%), Gaps = 2/241 (0%)

Query: 172 SLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISY-NVIANGWCLVKRTNKALEVL 230
           S  +FN +L+   + ++++ A + F +   +     + Y N + +        ++A E+ 
Sbjct: 168 SSRAFNYLLNAYIRNRRMDYAVDCFNLMVDRNVVPFVPYVNNVLSSLVRSNLIDEAKEIY 227

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
            +MV  G+  +  T  ++++   R  + EEA + F  +  R  E D + ++  V     +
Sbjct: 228 NKMVLIGVAGDNVTTQLLMRASLRERKPEEAMKIFRRVMSRGAEPDGLLFSLAVQAACKM 287

Query: 291 GEIKRARNVFDGM-VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
            ++  A ++   M   GGV  S  TY ++I    K+ ++E A+ V +EMVG G   +   
Sbjct: 288 KDLVMALDLLREMREKGGVPASQETYTSVIVACVKEGNMEEAVKVKDEMVGFGIPMSVIA 347

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
              +I G C+  E+ +AL+F  RM+++   P+   ++++I +FC   E+E+ +E++++M 
Sbjct: 348 ATSLITGFCNGNELGKALDFFNRMEEEGLAPDKVMFSVMIEWFCKNMEMEKAVEIYKRMK 407

Query: 410 S 410
           S
Sbjct: 408 S 408



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/273 (21%), Positives = 126/273 (46%), Gaps = 1/273 (0%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII 144
           KA      L     Y+   +S++  ID   +  D  +       M    + P   TF  +
Sbjct: 572 KAKEMLQNLIKEKRYSMGCTSYNSIIDGFFKEGDTDSAVEAYREMSENGISPNVVTFTSL 631

Query: 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKF 203
              +  + + D A+++   M     +  + ++  ++D  CK+  ++ AY LF ++     
Sbjct: 632 INGFCKSNRMDLALEMIHEMKSKDLKLDVPAYGALIDGFCKKNDMKTAYTLFSELLELGL 691

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
             +V  YN + +G+  + + + A+++ K+MV+ G++ +L TY  ++ G  + G +  A  
Sbjct: 692 MPNVSVYNNLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLKDGNLILASD 751

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
            + E+       D + Y  +V+G    G+  RA  + + M      P+V  Y+ +I    
Sbjct: 752 LYSELLALGIVPDEILYVVLVNGLSKKGQFVRASKMLEEMKKKDATPNVLIYSTVIAGHH 811

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
           ++ ++  A  V +EM+ KG + + T +N+++ G
Sbjct: 812 REGNLNEAFRVHDEMLEKGLVHDDTIFNLLVSG 844


>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
           [Vitis vinifera]
          Length = 811

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 187/388 (48%), Gaps = 10/388 (2%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  I    R   Y     ++  MK     P + T+  + + Y  + ++  A+++   M
Sbjct: 273 TYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVYGKSRRSKEAMEVLQEM 332

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNL-FKVFRGKFKADVISYNVIANGWCLVKRT 223
             +GC  S+ ++N+++    ++  +E A  L  ++     K DV +Y  + +G+    + 
Sbjct: 333 EGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKD 392

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
             A+++ +EM + G  PN+ T+N ++K +   G+  E  + F ++K  +C  D+VT+ T+
Sbjct: 393 KAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTL 452

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +  FG  G       VF  M   G +P   T+N +I    +  S + A+ V++ M+  G 
Sbjct: 453 LSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGV 512

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+ ++YN V+  L   G  +++ + +  MKD  C+PN  TY  L+  + +  EIER   
Sbjct: 513 NPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIERMCA 572

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           L E++ SG+  P       L+    V  K D L+   +  +E+  RGF P   T N +++
Sbjct: 573 LAEEIYSGIIEPRAVLLKTLV---LVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVS 629

Query: 464 GLLLIGNQGL---AKEILRLQSRCGRLP 488
              + G + +   A EIL    R G  P
Sbjct: 630 ---IYGRRQMVAKANEILDCMKRGGFTP 654



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 153/329 (46%), Gaps = 38/329 (11%)

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADV 207
           + S G+   AV +F  M E GC+ +L ++N IL++                         
Sbjct: 210 FTSNGRYREAVMVFKKMEEVGCKPTLITYNVILNV------------------------- 244

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
             Y  +   W      NK + ++  M   G+ P+  TYN ++    R    EEA     E
Sbjct: 245 --YGKMGMPW------NKMVGLVDRMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKE 296

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           MK      D VTY  ++  +G     K A  V   M   G  PS+ TYN++I    +   
Sbjct: 297 MKLAGFSPDKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGL 356

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
           +E+A+ +  +MV KG  P+  TY  ++ G    G+ + A++    M+++ C+PN+ T+N 
Sbjct: 357 LEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNA 416

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           LI+   + G+    +++FE + +  C P++ T+N L+S     +   D  V+G +  EM 
Sbjct: 417 LIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLS--VFGQNGMDSEVSG-VFKEMK 473

Query: 448 DRGFMPRKFTFNRVLNGLLLIG--NQGLA 474
             GF+P + TFN +++     G  +Q +A
Sbjct: 474 RAGFVPERDTFNTLISSYSRCGSFDQAMA 502



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/376 (21%), Positives = 168/376 (44%), Gaps = 41/376 (10%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           +   M++    P   TF  + + + + GK    +K+F  +    C   + ++NT+L +  
Sbjct: 398 IFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFG 457

Query: 185 KEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           +     +   +FK   R  F  +  ++N + + +      ++A+ V K M++ G+NP+L+
Sbjct: 458 QNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLS 517

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR----ARNV 299
           +YN VL    R G  +++ +   EMK  +C+ + +TY +++H +    EI+R    A  +
Sbjct: 518 SYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIERMCALAEEI 577

Query: 300 FDGMV-------------------------------NGGVLPSVATYNAMIQVLCKKDSV 328
           + G++                                 G  P + T NAM+ +  ++  V
Sbjct: 578 YSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMV 637

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
             A  + + M   G+ P+ TTYN ++     +   ER+ E +  +      P++ +YN +
Sbjct: 638 AKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNTV 697

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV-AGKLLIEMV 447
           I  +C  G +     +  +M      P++ TYN  I+S      +D + V A  ++  M+
Sbjct: 698 IYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTFIASY----AADSMFVEAIDVVCYMI 753

Query: 448 DRGFMPRKFTFNRVLN 463
             G  P + T+N +++
Sbjct: 754 KHGCKPNQSTYNSIVD 769



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 137/306 (44%), Gaps = 5/306 (1%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
           V  +   MK     P + TF  +   Y   G  D+A+ ++  M E G    L+S+N +L 
Sbjct: 465 VSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLA 524

Query: 182 LLCKE---KKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
            L +    K+ EK   L ++  G+ K + ++Y  + + +   K   +   + +E+    +
Sbjct: 525 ALARGGLWKQSEKV--LAEMKDGRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGII 582

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
            P       ++    +   + E  R FLE+++R    D+ T   +V  +G    + +A  
Sbjct: 583 EPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANE 642

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
           + D M  GG  PS+ TYN+++ +  +  + E +  +  E++ KG  P+  +YN VI   C
Sbjct: 643 ILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYC 702

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLD 418
             G M  A   +  M++    P++ TYN  I  +         +++   M    C PN  
Sbjct: 703 RNGRMRDASRVLSEMRESGPAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQS 762

Query: 419 TYNILI 424
           TYN ++
Sbjct: 763 TYNSIV 768



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 126/289 (43%), Gaps = 19/289 (6%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADR----AVK 159
           SS++  +   AR   ++    ++  MK     P + T+  +   Y +  + +R    A +
Sbjct: 517 SSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIERMCALAEE 576

Query: 160 IFLSMHEHGC--RQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGW 217
           I+  + E      ++L   N+  DLL +    E+A+   ++ +  F  D+ + N + + +
Sbjct: 577 IYSGIIEPRAVLLKTLVLVNSKCDLLME---TERAF--LELRQRGFSPDITTLNAMVSIY 631

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
              +   KA E+L  M   G  P+LTTYN ++  Y R+   E +     E+  +    D+
Sbjct: 632 GRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDI 691

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           ++Y T+++ +   G ++ A  V   M   G  P + TYN  I           AI V   
Sbjct: 692 ISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTFIASYAADSMFVEAIDVVCY 751

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK--------DDEC 378
           M+  G  PN +TYN ++   C     + A  FV  ++        D+EC
Sbjct: 752 MIKHGCKPNQSTYNSIVDWYCKLNRRDEASMFVNNLRKLDPHISMDEEC 800


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 103/365 (28%), Positives = 175/365 (47%), Gaps = 6/365 (1%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           + ++F+  +  + R  D      + + M    + P   +F+ I   +   G+  RA+  F
Sbjct: 328 NAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYF 387

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCL 219
             M   G       +  +++  C+   V  A  +    V RG    DV++YN + NG C 
Sbjct: 388 EKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCV-MDVVTYNTLLNGLCR 446

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
            K  + A E+ KEMV+RG+ P+  T   ++ GY + G + +A   F  M  R  + DVVT
Sbjct: 447 GKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVT 506

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y T++ GF  VGE+++A+ ++  M++  + PS  +++ +I   C    V  A  +++EM 
Sbjct: 507 YNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMK 566

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            KG  P   T N +I+G    G + +A +F+  M  +   P+  TYN LI  F      +
Sbjct: 567 EKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFD 626

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
           R   L   M     LPNL TYN ++       +  +   A  +L +M+D+G  P K T+ 
Sbjct: 627 RAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQE---AEMVLHKMIDKGINPDKSTYT 683

Query: 460 RVLNG 464
            ++NG
Sbjct: 684 SLING 688



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 107/343 (31%), Positives = 166/343 (48%), Gaps = 9/343 (2%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLS-MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV 198
           T  I+       GK D  V ++LS M E G    L ++NT+++  C+   V +A+ L   
Sbjct: 226 TLNIMVNALCKDGKLDN-VGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDC 284

Query: 199 FRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
             GK  K  + +YN + NG C      +A  VL EM+  GL PN  T+N +L    R   
Sbjct: 285 MAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKED 344

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           + EA R F EM +R    D++++++IV  F   GE+ RA   F+ M   G++P    Y  
Sbjct: 345 VWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTI 404

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           +I   C+ D V  A+ +  EMV +G + +  TYN ++ GLC    ++ A E    M +  
Sbjct: 405 LINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERG 464

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
             P+  T   LI  +C  G + + L LFE M      P++ TYN L+       K  ++ 
Sbjct: 465 VFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFC---KVGEME 521

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
            A +L  +M+ R   P   +F+ ++NG   +   GL  E  RL
Sbjct: 522 KAKELWYDMISREIFPSYISFSILINGFCSL---GLVSEAFRL 561



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 168/331 (50%), Gaps = 4/331 (1%)

Query: 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF- 199
           F ++   YV A K     + F  + + G   S+N+ N +L  + K   V+ A+ +++ F 
Sbjct: 157 FDLLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYEDFV 216

Query: 200 RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
           +     +V + N++ N  C   + +     L EM ++G+  +L TYN ++  Y R G + 
Sbjct: 217 KSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVS 276

Query: 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319
           EA+     M  +  +  + TY  +++G    G  +RA+ V D M+  G+ P+ AT+N M+
Sbjct: 277 EAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPML 336

Query: 320 QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
              C+K+ V  A  VF EM+ +G +P+  +++ ++      GE+ RAL +  +MK     
Sbjct: 337 VESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLV 396

Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA 439
           P+   Y ILI  +C   ++   L++  +M    C+ ++ TYN L++ +   K  DD   A
Sbjct: 397 PDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDD---A 453

Query: 440 GKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
            +L  EMV+RG  P  +T   +++G    GN
Sbjct: 454 DELFKEMVERGVFPDFYTLTTLIHGYCKDGN 484



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 157/340 (46%), Gaps = 36/340 (10%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           SF   + + +R  +         +MK + L P    + I+   Y        A+K+   M
Sbjct: 366 SFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEM 425

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKF------------------- 203
            E GC   + ++NT+L+ LC+ K ++ A  LFK  V RG F                   
Sbjct: 426 VERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNM 485

Query: 204 ---------------KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
                          K DV++YN + +G+C V    KA E+  +M+ R + P+  +++I+
Sbjct: 486 TKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSIL 545

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           + G+   G + EA+R + EMK++  +  +VT  TI+ G+   G + +A +  + M++ GV
Sbjct: 546 INGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGV 605

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
            P   TYN +I    K+++ + A  +   M  +G +PN  TYN ++ G    G M+ A  
Sbjct: 606 PPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEM 665

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            + +M D    P+  TY  LI  +     ++    + ++M
Sbjct: 666 VLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEM 705



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 160/345 (46%), Gaps = 4/345 (1%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           + LV  M    L P   T+  +       G  +RA ++   M   G   +  +FN +L  
Sbjct: 279 FGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVE 338

Query: 183 LCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
            C+++ V +A  +F ++ +     D+IS++ I   +       +AL   ++M   GL P+
Sbjct: 339 SCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPD 398

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
              Y I++ GY R   +  A +   EM +R C +DVVTY T+++G      +  A  +F 
Sbjct: 399 TVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFK 458

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            MV  GV P   T   +I   CK  ++  A+ +FE M  +   P+  TYN ++ G C  G
Sbjct: 459 EMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVG 518

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
           EME+A E    M   E  P+  +++ILI  FC  G +     L+++M      P L T N
Sbjct: 519 EMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCN 578

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
            +I       ++ +L  A   L  M+  G  P   T+N ++N  +
Sbjct: 579 TIIKGYL---RAGNLSKANDFLNTMISEGVPPDCITYNTLINSFV 620



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 121/259 (46%), Gaps = 36/259 (13%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L   M    + P   T   +   Y   G   +A+ +F +M     +  + ++NT++D  C
Sbjct: 456 LFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFC 515

Query: 185 KEKKVEKAYNL-FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  ++EKA  L + +   +     IS++++ NG+C +   ++A  +  EM ++G+ P L 
Sbjct: 516 KVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLV 575

Query: 244 TYNIVLKGYFRAGQIEEA---------------------------------WRFFL--EM 268
           T N ++KGY RAG + +A                                   FFL   M
Sbjct: 576 TCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNM 635

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
           ++R    ++VTY  I+ GF   G ++ A  V   M++ G+ P  +TY ++I     KD++
Sbjct: 636 EERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNM 695

Query: 329 ENAILVFEEMVGKGYMPNS 347
           + A  V +EM+ +G++P+ 
Sbjct: 696 KEAFRVHDEMLQRGFVPDD 714



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 115/249 (46%), Gaps = 7/249 (2%)

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           +  ++++++ Y +A ++ E    F  ++KR   + +     ++     VG +  A  V++
Sbjct: 154 VVVFDLLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYE 213

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
             V  G + +V T N M+  LCK   ++N  +   EM  KG   +  TYN ++   C  G
Sbjct: 214 DFVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRG 273

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTY 420
            +  A   V  M     +P + TYN LI   C  G  ER   + ++M G G+C PN  T+
Sbjct: 274 LVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLC-PNAATF 332

Query: 421 N-ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           N +L+ S     + +D+  A ++  EM+ RG +P   +F+ ++      G  G A     
Sbjct: 333 NPMLVESC----RKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFE 388

Query: 480 LQSRCGRLP 488
                G +P
Sbjct: 389 KMKGVGLVP 397


>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 536

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 116/456 (25%), Positives = 207/456 (45%), Gaps = 47/456 (10%)

Query: 64  SLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVW 123
           S +  P +  +++K+L N+      F+    +     HS  +++       +   +    
Sbjct: 64  SKNLNPFISFEVVKKLDNNPHIGFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGMHDLAG 123

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE-HGCRQSLNSFNTILDL 182
            +   MKS  + P  +    +   +   GK   A  + L  +E  GC   +NS   +L+ 
Sbjct: 124 QMFECMKSDGISPNSRLLGFLVSSFAEKGKLHCATALLLQSYEVEGCCMVVNS---LLNT 180

Query: 183 LCKEKKVEKAYNLFKV-FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           L K  +VE A  LF+   R +   D  ++N++  G C V +  KA+E+L  M   G  P+
Sbjct: 181 LVKLDRVEDAMKLFEEHLRFQSCNDTKTFNILIRGLCGVGKAEKAVELLGGMSGFGCLPD 240

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK-CEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           + TYN ++KG+ ++ ++++A   F ++K    C  DVVTYT+++ G+   G+++ A  + 
Sbjct: 241 IVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGKMQEASVLL 300

Query: 301 DGM---------------VNG--------------------GVLPSVATYNAMIQVLCKK 325
           D M               V+G                    G  P V T+ ++I   C+ 
Sbjct: 301 DDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRV 360

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
             V     ++EEM  +G  PN+ TY+++I  LC    + +A E +G++   +  P    Y
Sbjct: 361 GQVNQGFRLWEEMNARGMFPNAFTYSILINALCKENRLLKARELLGQLASKDIIPQPFMY 420

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           N +I  FC AG++   + + E+M    C P+  T+ ILI    ++ +   +  A  +  +
Sbjct: 421 NPVIDGFCKAGKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCMKGR---MFEAVSIFHK 477

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481
           MV  G  P K T + +L+ LL     G+AKE   L 
Sbjct: 478 MVAIGCSPDKITVSSLLSCLL---KAGMAKEAYHLN 510


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 177/347 (51%), Gaps = 4/347 (1%)

Query: 135 GPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN 194
           G     F ++   YV A K     + F  +   G   S+N+ N++L  L K   V+ A+ 
Sbjct: 24  GSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWE 83

Query: 195 LFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
           +++ V R   + +V + N++ N  C  ++       L +M ++G+ P++ TYN ++  Y 
Sbjct: 84  IYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYC 143

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
           R G +EEA+     M  +  +  V TY  I++G    G+  RA+ V D M+  G+ P  A
Sbjct: 144 RQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTA 203

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           TYN ++   C+ D++ +A  +F+EM  +G +P+  +++ +I  L   G +++AL++   M
Sbjct: 204 TYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDM 263

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
           K+    P+   Y ILI  FC  G +   L++ ++M    C+ ++ TYN +++ +   K  
Sbjct: 264 KNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKM- 322

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
             L  A +L  EM +RG  P  +TF  ++NG    GN   A  +  +
Sbjct: 323 --LSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEM 367



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 175/362 (48%), Gaps = 4/362 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  I+   +   Y     ++  M  + + P   T+ I+            A +IF  M
Sbjct: 169 TYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEM 228

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRT 223
              G    L SF+ ++ LL K   +++A   F+  +    A D + Y ++  G+C     
Sbjct: 229 PSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVM 288

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           ++AL+V  EM+++G   ++ TYN +L G  +   + EA   F EM +R    D  T+TT+
Sbjct: 289 SEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTL 348

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++G+   G + +A  +F+ M+   + P V TYN +I   CK   +E    ++ +M+ +  
Sbjct: 349 INGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRI 408

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN  +Y ++I G C+ G +  A      M +   E  + T N +++ +C AG   +  E
Sbjct: 409 YPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADE 468

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
               M     +P+  TYN LI+  F+++++ D   A  L+ +M + G +P   T+N +LN
Sbjct: 469 FLSNMLLKGIVPDGITYNTLING-FIKEENMDRAFA--LVNKMENSGLLPDVITYNVILN 525

Query: 464 GL 465
           G 
Sbjct: 526 GF 527



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 170/341 (49%), Gaps = 4/341 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           +   M S  + P   +F+ +       G  D+A+K F  M   G       +  ++   C
Sbjct: 224 IFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFC 283

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           +   + +A  +  ++       DV++YN I NG C  K  ++A E+  EM +RG+ P+  
Sbjct: 284 RNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFY 343

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           T+  ++ GY + G + +A   F  M +R  + DVVTY T++ GF    E+++   +++ M
Sbjct: 344 TFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDM 403

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           ++  + P+  +Y  +I   C    V  A  +++EMV KG+     T N +++G C  G  
Sbjct: 404 ISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNA 463

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
            +A EF+  M      P+  TYN LI  F     ++R   L  KM +   LP++ TYN++
Sbjct: 464 VKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVI 523

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           ++  F R+    +  A  ++++M++RG  P + T+  ++NG
Sbjct: 524 LNG-FSRQGR--MQEAELIMLKMIERGVNPDRSTYTSLING 561



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 109/357 (30%), Positives = 165/357 (46%), Gaps = 40/357 (11%)

Query: 159 KIFLS-MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANG 216
           K FLS M E G    + ++NT+++  C++  +E+A+ L     GK  K  V +YN I NG
Sbjct: 117 KSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIING 176

Query: 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL---------------------KGYF-- 253
            C   +  +A  VL EM+  G++P+  TYNI+L                     +G    
Sbjct: 177 LCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPD 236

Query: 254 ------------RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
                       + G +++A ++F +MK      D V YT ++ GF   G +  A  V D
Sbjct: 237 LVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRD 296

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M+  G +  V TYN ++  LCK+  +  A  +F EM  +G  P+  T+  +I G    G
Sbjct: 297 EMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDG 356

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
            M +A+     M     +P+V TYN LI  FC   E+E+  EL+  M S    PN  +Y 
Sbjct: 357 NMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYG 416

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           ILI+         +   A +L  EMV++GF     T N ++ G    GN   A E L
Sbjct: 417 ILINGYCNMGCVSE---AFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFL 470



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 153/355 (43%), Gaps = 38/355 (10%)

Query: 92  ILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149
           I    P+    P   SF   I L ++             MK+  L P    + I+   + 
Sbjct: 224 IFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFC 283

Query: 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKF---- 203
             G    A+K+   M E GC   + ++NTIL+ LCKEK + +A  LF     RG F    
Sbjct: 284 RNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFY 343

Query: 204 ------------------------------KADVISYNVIANGWCLVKRTNKALEVLKEM 233
                                         K DV++YN + +G+C      K  E+  +M
Sbjct: 344 TFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDM 403

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           + R + PN  +Y I++ GY   G + EA+R + EM ++  E  ++T  TIV G+   G  
Sbjct: 404 ISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNA 463

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
            +A      M+  G++P   TYN +I    K+++++ A  +  +M   G +P+  TYNV+
Sbjct: 464 VKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVI 523

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           + G    G M+ A   + +M +    P+  TY  LI        ++    + ++M
Sbjct: 524 LNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEM 578



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 175/389 (44%), Gaps = 12/389 (3%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  I+   R       + L+  M    L P   T+  I       GK  RA  +   M
Sbjct: 134 TYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEM 193

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYN----VIANGWCL 219
            + G      ++N +L   C+   +  A  +F     +    D++S++    +++   CL
Sbjct: 194 LKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCL 253

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
               ++AL+  ++M + GL P+   Y I++ G+ R G + EA +   EM ++ C +DVVT
Sbjct: 254 ----DQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVT 309

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y TI++G      +  A  +F  M   GV P   T+  +I    K  ++  A+ +FE M+
Sbjct: 310 YNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMI 369

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            +   P+  TYN +I G C   EME+  E    M      PN  +Y ILI  +C+ G + 
Sbjct: 370 QRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVS 429

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
               L+++M        + T N ++       ++ + + A + L  M+ +G +P   T+N
Sbjct: 430 EAFRLWDEMVEKGFEATIITCNTIVKGYC---RAGNAVKADEFLSNMLLKGIVPDGITYN 486

Query: 460 RVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            ++NG +   N   A  ++      G LP
Sbjct: 487 TLINGFIKEENMDRAFALVNKMENSGLLP 515



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 132/283 (46%), Gaps = 6/283 (2%)

Query: 201 GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
           G   ++ + ++++   +   ++  +  E  + +  +GL  ++   N +L G  + G ++ 
Sbjct: 21  GNCGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDL 80

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
           AW  + E+ +   +++V T   +++      +I+  ++    M   GV P V TYN +I 
Sbjct: 81  AWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLIN 140

Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
             C++  +E A  + + M GKG  P   TYN +I GLC TG+  RA   +  M      P
Sbjct: 141 AYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSP 200

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAG 440
           +  TYNIL+   C    +     +F++M S   +P+L +++ LI  +    K+  L  A 
Sbjct: 201 DTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLL---SKNGCLDQAL 257

Query: 441 KLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           K   +M + G  P    +  ++ G       G+  E L+++  
Sbjct: 258 KYFRDMKNAGLAPDNVIYTILIGGFC---RNGVMSEALKVRDE 297



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 117/259 (45%), Gaps = 36/259 (13%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L   M    + P   TF  +   Y   G  ++AV +F  M +   +  + ++NT++D  C
Sbjct: 329 LFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFC 388

Query: 185 KEKKVEKAYNLF-----------------------------KVFR-------GKFKADVI 208
           K  ++EK   L+                             + FR         F+A +I
Sbjct: 389 KGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATII 448

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           + N I  G+C      KA E L  M+ +G+ P+  TYN ++ G+ +   ++ A+    +M
Sbjct: 449 TCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKM 508

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
           +      DV+TY  I++GF   G ++ A  +   M+  GV P  +TY ++I     ++++
Sbjct: 509 ENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNL 568

Query: 329 ENAILVFEEMVGKGYMPNS 347
           + A  V +EM+ +G++P+ 
Sbjct: 569 KEAFRVHDEMLQRGFVPDD 587



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 88/216 (40%), Gaps = 38/216 (17%)

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
           C  + + +  +V  +    +++     F  + + G+  S+   N+++  L K   V+ A 
Sbjct: 23  CGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAW 82

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
            +++E+V  G   N  T N++I  LC   ++E    F+  M++    P+V TYN LI  +
Sbjct: 83  EIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAY 142

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
           C  G +E   E FE M S                                   M  +G  
Sbjct: 143 CRQGLLE---EAFELMDS-----------------------------------MSGKGLK 164

Query: 453 PRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           P  FT+N ++NGL   G    AK +L    + G  P
Sbjct: 165 PCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSP 200


>gi|449436958|ref|XP_004136259.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Cucumis sativus]
 gi|449497032|ref|XP_004160294.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Cucumis sativus]
          Length = 504

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 115/413 (27%), Positives = 213/413 (51%), Gaps = 15/413 (3%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           AL  FN++S    + H+ +++   I   A+ + ++ +  ++H+M   +    +  F  + 
Sbjct: 66  ALDIFNMVSEQQGFNHNHATYASIIQNLAKYKKFQAIDGVLHQMTYDTCKVHEGIFLNLM 125

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQ--SLNSFNTILDLLCKEKKVEKAYNLFKVFRGK- 202
           + +  +   +R + +F ++ +   R+  SL + +T L+LL +  +V+ A  L    R K 
Sbjct: 126 KHFSKSSMHERVLDMFYAI-KSIVREKPSLKAISTCLNLLVESDRVDLARKLLVNARSKL 184

Query: 203 -FKADVISYNVIANGWCLVKRTNKALEVLKEMVD-RGLNPNLTTYNIVLKGYFRAGQIEE 260
             + +   +N++    C       A EV+KEM   R   PNL TY+ ++ G    G+++E
Sbjct: 185 NLRPNTCIFNILVKHHCRNGDLQAAFEVVKEMKSARVSYPNLVTYSTLIGGLCENGKLKE 244

Query: 261 AWRFFLEM-KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319
           A  FF EM  K     D +TY  +++GF   G++ RAR + + M + G  P+V  Y+ ++
Sbjct: 245 AIEFFEEMVSKDNILPDALTYNILINGFCQRGKVDRARTILEFMKSNGCSPNVFNYSVLM 304

Query: 320 QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
              CK+  ++ A  VF E+   G  P++ +Y  +I  LC TG ++ A E + +MKD +C 
Sbjct: 305 NGYCKEGRLQEAKEVFNEIKSLGMKPDTISYTTLINCLCRTGRVDEATELLQQMKDKDCR 364

Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA 439
            +  T+N+++   C  G  +  L++ +K+       N  +Y I+++  F+ +K  +L  A
Sbjct: 365 ADTVTFNVMLGGLCREGRFDEALDMVQKLPFEGFYLNKGSYRIVLN--FLTQKG-ELRKA 421

Query: 440 GKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQFK 492
            +LL  M++RGF+P   T N     LLL+ N G+ K+   ++S  G L   FK
Sbjct: 422 TELLGLMLNRGFVPHHATSN---TLLLLLCNNGMVKDA--VESLLGLLEMGFK 469



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 119/236 (50%), Gaps = 1/236 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+ I+   +   GK DRA  I   M  +GC  ++ +++ +++  CKE ++++A  +
Sbjct: 260 PDALTYNILINGFCQRGKVDRARTILEFMKSNGCSPNVFNYSVLMNGYCKEGRLQEAKEV 319

Query: 196 FKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F   +    K D ISY  + N  C   R ++A E+L++M D+    +  T+N++L G  R
Sbjct: 320 FNEIKSLGMKPDTISYTTLINCLCRTGRVDEATELLQQMKDKDCRADTVTFNVMLGGLCR 379

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G+ +EA     ++      ++  +Y  +++     GE+++A  +   M+N G +P  AT
Sbjct: 380 EGRFDEALDMVQKLPFEGFYLNKGSYRIVLNFLTQKGELRKATELLGLMLNRGFVPHHAT 439

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
            N ++ +LC    V++A+     ++  G+ P   ++  ++  +C   +M    E +
Sbjct: 440 SNTLLLLLCNNGMVKDAVESLLGLLEMGFKPEHESWFTLVDLICRERKMLPVFELL 495



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 132/279 (47%), Gaps = 3/279 (1%)

Query: 118 DYRTVWTLVHRMKSLSLG-PTQKTFAIIAERYVSAGKADRAVKIFLSM-HEHGCRQSLNS 175
           D +  + +V  MKS  +  P   T++ +       GK   A++ F  M  +        +
Sbjct: 205 DLQAAFEVVKEMKSARVSYPNLVTYSTLIGGLCENGKLKEAIEFFEEMVSKDNILPDALT 264

Query: 176 FNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           +N +++  C+  KV++A  + +  +      +V +Y+V+ NG+C   R  +A EV  E+ 
Sbjct: 265 YNILINGFCQRGKVDRARTILEFMKSNGCSPNVFNYSVLMNGYCKEGRLQEAKEVFNEIK 324

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
             G+ P+  +Y  ++    R G+++EA     +MK + C  D VT+  ++ G    G   
Sbjct: 325 SLGMKPDTISYTTLINCLCRTGRVDEATELLQQMKDKDCRADTVTFNVMLGGLCREGRFD 384

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
            A ++   +   G   +  +Y  ++  L +K  +  A  +   M+ +G++P+  T N ++
Sbjct: 385 EALDMVQKLPFEGFYLNKGSYRIVLNFLTQKGELRKATELLGLMLNRGFVPHHATSNTLL 444

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
             LC+ G ++ A+E +  + +   +P  +++  L+   C
Sbjct: 445 LLLCNNGMVKDAVESLLGLLEMGFKPEHESWFTLVDLIC 483


>gi|222615488|gb|EEE51620.1| hypothetical protein OsJ_32898 [Oryza sativa Japonica Group]
          Length = 822

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 106/397 (26%), Positives = 175/397 (44%), Gaps = 39/397 (9%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   I+   +  D   + +L   M+   L P  + +  + +       A +A+ I   M
Sbjct: 276 TYGSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWSATQAMVILKQM 335

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRT 223
              GC   + +FNT++  LC E  V KA +  +   R +   + +SY  + +G+C+    
Sbjct: 336 FASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGEL 395

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW--------------------- 262
             A ++L EM+ RG  P++ T+  ++ G   AG++ EA                      
Sbjct: 396 MAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVL 455

Query: 263 --------------RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
                             EM ++  + D   Y T++ GF     +  AR +F+ M + GV
Sbjct: 456 ISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGV 515

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
            P + + NAMI+  C+   +  AIL    M   G +P+  TY  VI G    G +  AL 
Sbjct: 516 RPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALR 575

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
           ++  M   +C+PNV TY+ LI  +C  G+ +    LF  M +    PN+ TY ILI S+F
Sbjct: 576 WLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGLFANMQAEALSPNVVTYTILIGSLF 635

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
              K D +L AG     M+     P   T + ++NGL
Sbjct: 636 ---KKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGL 669



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 167/367 (45%), Gaps = 4/367 (1%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID   R  D      L+  M++    PT  T+  +       G  ++   +FL M + G 
Sbjct: 246 IDGYCRRGDMGRGLLLLGEMEAKGFLPTLVTYGSLINCLGKKGDLEKIGSLFLEMRKRGL 305

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALE 228
             ++  +N+++D LCK     +A  + K +F      D+I++N +  G C      KA  
Sbjct: 306 SPNVQIYNSVIDALCKCWSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEH 365

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
            L+E + R LNPN  +Y  ++ G+   G++  A    +EM  R    DVVT+  ++HG  
Sbjct: 366 FLREAIRRELNPNQLSYTPLIHGFCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLV 425

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
           V G++  A  V + M    V P V  YN +I  LCKK  +  A  + EEM+ K   P+  
Sbjct: 426 VAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEF 485

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            Y  +I G   +  +  A +    M+     P++ + N +I+ +C  G +   +     M
Sbjct: 486 VYATLIDGFIRSENLGDARKIFEFMEHKGVRPDIVSCNAMIKGYCQFGMMSEAILCMSNM 545

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
               C+P+  TY  +IS      K  +L  A + L +M+ R   P   T++ ++NG    
Sbjct: 546 RKVGCIPDEFTYTTVISGY---AKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKT 602

Query: 469 GNQGLAK 475
           G+   A+
Sbjct: 603 GDTDSAE 609



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 129/505 (25%), Positives = 220/505 (43%), Gaps = 53/505 (10%)

Query: 29  SPAPL-PPAAADPAALASLILT-STDP---RTLTQTLHCPSLHWTPQLVDQIIKRLWNHA 83
           SP PL  PA A  A+LA ++ T ST+P   R+L   L  P    +   +   +  L +  
Sbjct: 21  SPNPLISPAVA--ASLAGVLATRSTNPTWARSLAALLPSP---LSDAHLAAAVSSLPDPD 75

Query: 84  LK-ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRD--YRTVWTLVHRMKSLSLGPTQKT 140
           L  AL  ++    H      P+   H+  L    R   +  V   +  M      PT+  
Sbjct: 76  LAVALLSWSQSPDHHVALQDPTPLAHSTLLRLLARSRRFDAVDDTLQSMSLAGAAPTRAC 135

Query: 141 FAIIAERYVSAGKADRAVKIFLSMHE-HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
              +   Y  AG   +A  +   + E +G    +   N +L LL ++++ + A  L+   
Sbjct: 136 LGALVAAYADAGMLGKATDMCERLREQYGSLPEVTHCNRLLKLLVEQRRWDDARKLYDEM 195

Query: 200 RGKFK-ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
            G+   AD  S  V+  G CL  R  + L++++     G  P++  YN+++ GY R G +
Sbjct: 196 LGEDSGADNYSTCVLVRGLCLEGRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDM 255

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
                   EM+ +     +VTY ++++  G  G++++  ++F  M   G+ P+V  YN++
Sbjct: 256 GRGLLLLGEMEAKGFLPTLVTYGSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSV 315

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           I  LCK  S   A+++ ++M   G  P+  T+N +I GLCH G + +A  F+      E 
Sbjct: 316 IDALCKCWSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRREL 375

Query: 379 EPNVQTYNILIRYFC-----------------------------------DAGEIERGLE 403
            PN  +Y  LI  FC                                    AG++   L 
Sbjct: 376 NPNQLSYTPLIHGFCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALI 435

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           + EKM      P+++ YN+LIS +    K   L  A  +L EM+++   P +F +  +++
Sbjct: 436 VREKMTERQVFPDVNIYNVLISGLC---KKHMLPAAKNILEEMLEKNVQPDEFVYATLID 492

Query: 464 GLLLIGNQGLAKEILRLQSRCGRLP 488
           G +   N G A++I       G  P
Sbjct: 493 GFIRSENLGDARKIFEFMEHKGVRP 517



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 154/350 (44%), Gaps = 19/350 (5%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   TF  +    V AGK   A+ +   M E      +N +N ++  LCK+  +  A N+
Sbjct: 412 PDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKHMLPAAKNI 471

Query: 196 FK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            + +     + D   Y  + +G+   +    A ++ + M  +G+ P++ + N ++KGY +
Sbjct: 472 LEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVRPDIVSCNAMIKGYCQ 531

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G + EA      M+K  C  D  TYTT++ G+   G +  A      M+     P+V T
Sbjct: 532 FGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVT 591

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y+++I   CK    ++A  +F  M  +   PN  TY ++I  L    ++ RA  +   M 
Sbjct: 592 YSSLINGYCKTGDTDSAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETML 651

Query: 375 DDECEPNVQTYNILIRYF------------CDAGEI---ERGLELFEKMGSGVCLPNLDT 419
            + C PN  T + L+               C+  E+   +  L +F+K+   +  P    
Sbjct: 652 LNHCSPNDVTLHYLVNGLTSCTPCVINSICCNTSEVHGKDALLVVFKKLVFDIGDPRNSA 711

Query: 420 YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
           YN +I S+    + + L  A      M  +G++P   TF  +L G   +G
Sbjct: 712 YNAIIFSLC---RHNMLREALDFKNRMAKKGYVPNPITFLSLLYGFCSVG 758



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 117/268 (43%), Gaps = 8/268 (2%)

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
           + L+ M   G  P       ++  Y  AG + +A      ++++   +  VT+   +   
Sbjct: 119 DTLQSMSLAGAAPTRACLGALVAAYADAGMLGKATDMCERLREQYGSLPEVTHCNRL--L 176

Query: 288 GVVGEIKR---ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            ++ E +R   AR ++D M+         +   +++ LC +  VE  + + E   G G +
Sbjct: 177 KLLVEQRRWDDARKLYDEMLGEDSGADNYSTCVLVRGLCLEGRVEEGLKLIEARWGAGCI 236

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           P+   YNV+I G C  G+M R L  +G M+     P + TY  LI      G++E+   L
Sbjct: 237 PHVVFYNVLIDGYCRRGDMGRGLLLLGEMEAKGFLPTLVTYGSLINCLGKKGDLEKIGSL 296

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           F +M      PN+  YN +I ++     +   +V   +L +M   G  P   TFN ++ G
Sbjct: 297 FLEMRKRGLSPNVQIYNSVIDALCKCWSATQAMV---ILKQMFASGCDPDIITFNTLITG 353

Query: 465 LLLIGNQGLAKEILRLQSRCGRLPRQFK 492
           L   G+   A+  LR   R    P Q  
Sbjct: 354 LCHEGHVRKAEHFLREAIRRELNPNQLS 381



 Score = 40.4 bits (93), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 36/181 (19%), Positives = 76/181 (41%), Gaps = 16/181 (8%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T++ +   Y   G  D A  +F +M       ++ ++  ++  L K+ KV +A   
Sbjct: 587 PNVVTYSSLINGYCKTGDTDSAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLY 646

Query: 196 FK-VFRGKFKADVISYNVIANGW-----CLVKRT----------NKALEVLKEMVDRGLN 239
           F+ +       + ++ + + NG      C++             +  L V K++V    +
Sbjct: 647 FETMLLNHCSPNDVTLHYLVNGLTSCTPCVINSICCNTSEVHGKDALLVVFKKLVFDIGD 706

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           P  + YN ++    R   + EA  F   M K+    + +T+ ++++GF  VG+    R +
Sbjct: 707 PRNSAYNAIIFSLCRHNMLREALDFKNRMAKKGYVPNPITFLSLLYGFCSVGKSMNWRTI 766

Query: 300 F 300
            
Sbjct: 767 L 767


>gi|413944227|gb|AFW76876.1| hypothetical protein ZEAMMB73_037126 [Zea mays]
          Length = 595

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 144/286 (50%), Gaps = 9/286 (3%)

Query: 116 LRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS 175
            R+ RTVW                T++ +A  ++     D A+++F  M +HG R     
Sbjct: 298 FREKRTVWPEAR--------GNAVTYSTLASAFLHCNNVDMAMELFHEMADHGHRPDAVM 349

Query: 176 FNTILDLLCKEKKV-EKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           + T++  L +  ++ +       + +  FK D  +YN++  G+C  K+ ++A E+L+EM 
Sbjct: 350 YFTMISGLTQAGRLLDACTTAASMKKAGFKLDAKAYNILIGGFCRKKKLHEAYELLEEMK 409

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
             GL P++ TYN +L G  +AG           M    C+  VVT+ T+VHG+   G+  
Sbjct: 410 GVGLQPDVYTYNTLLSGLCKAGDFSAVDELLGHMIDDGCQPSVVTFGTLVHGYCKAGKTD 469

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
            A  +F  M    + P+   YN +I  LCK   V+ AI +F+EM  K    N TTYN ++
Sbjct: 470 EALRIFRSMDEARIQPNTVIYNTLIDFLCKSREVDVAIKLFDEMREKNVPANVTTYNALL 529

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           +GL      E+A E + RM+++ C PN  T ++L+ +  + GE ER
Sbjct: 530 KGLQDKKMAEKAFELMDRMREERCTPNYVTVDVLMEWLPEIGETER 575



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 157/338 (46%), Gaps = 6/338 (1%)

Query: 135 GPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN 194
            P   T+  +A+ +   G    A KI   M + G   ++ + NTI+  LC+  +V  A  
Sbjct: 237 APNAVTYNCLADAFCRVGDIGMACKIVARMEKEGVAPNVITMNTIIGGLCRVGRVGAALE 296

Query: 195 LFKVFRG---KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
            F+  R    + + + ++Y+ +A+ +      + A+E+  EM D G  P+   Y  ++ G
Sbjct: 297 FFREKRTVWPEARGNAVTYSTLASAFLHCNNVDMAMELFHEMADHGHRPDAVMYFTMISG 356

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
             +AG++ +A      MKK   ++D   Y  ++ GF    ++  A  + + M   G+ P 
Sbjct: 357 LTQAGRLLDACTTAASMKKAGFKLDAKAYNILIGGFCRKKKLHEAYELLEEMKGVGLQPD 416

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
           V TYN ++  LCK         +   M+  G  P+  T+  ++ G C  G+ + AL    
Sbjct: 417 VYTYNTLLSGLCKAGDFSAVDELLGHMIDDGCQPSVVTFGTLVHGYCKAGKTDEALRIFR 476

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
            M +   +PN   YN LI + C + E++  ++LF++M       N+ TYN L+  +  +K
Sbjct: 477 SMDEARIQPNTVIYNTLIDFLCKSREVDVAIKLFDEMREKNVPANVTTYNALLKGLQDKK 536

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
            ++    A +L+  M +    P   T + ++  L  IG
Sbjct: 537 MAEK---AFELMDRMREERCTPNYVTVDVLMEWLPEIG 571



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 117/464 (25%), Positives = 190/464 (40%), Gaps = 47/464 (10%)

Query: 41  AALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYA 100
           AA+ +++L    P   T +L    L  +P L  ++      +AL A          P++A
Sbjct: 35  AAILAILLHGHTPSAATLSL----LRLSPGLASEL------YALIA---------EPSHA 75

Query: 101 HSPSSFDHAIDLAARLR----DYRTVWTLVHRMKS-----------LSLGPTQKTFAIIA 145
            +P+S      LAAR R        +  LV R  S           L+ G      +I  
Sbjct: 76  FTPASLASLHSLAARHRIPPPSALLLSKLVRRFSSPAEAAGFLRDSLASGAPAPDISIFN 135

Query: 146 ERYVSAGKADR---AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK 202
               + G+A       ++F SM +   +  + ++  +L+ LCK   V  A  +       
Sbjct: 136 SLLTALGRAGNLRGMTELFTSMRDASVKPDVVTYGILLNGLCKSGHVGDALKVLDRMSSP 195

Query: 203 FK---ADVISYNVIANGWCLVKRTNKALEVLKEMVDR--GLNPNLTTYNIVLKGYFRAGQ 257
                 D+   N + +G C + R  +A+  + E +    G  PN  TYN +   + R G 
Sbjct: 196 GSDVCPDIAILNTVVDGLCKIGRLQQAIIFVDERMRHVHGCAPNAVTYNCLADAFCRVGD 255

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF--DGMVNGGVLPSVATY 315
           I  A +    M+K     +V+T  TI+ G   VG +  A   F     V      +  TY
Sbjct: 256 IGMACKIVARMEKEGVAPNVITMNTIIGGLCRVGRVGAALEFFREKRTVWPEARGNAVTY 315

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           + +       ++V+ A+ +F EM   G+ P++  Y  +I GL   G +  A      MK 
Sbjct: 316 STLASAFLHCNNVDMAMELFHEMADHGHRPDAVMYFTMISGLTQAGRLLDACTTAASMKK 375

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
              + + + YNILI  FC   ++    EL E+M      P++ TYN L+S +    K+ D
Sbjct: 376 AGFKLDAKAYNILIGGFCRKKKLHEAYELLEEMKGVGLQPDVYTYNTLLSGLC---KAGD 432

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
                +LL  M+D G  P   TF  +++G    G    A  I R
Sbjct: 433 FSAVDELLGHMIDDGCQPSVVTFGTLVHGYCKAGKTDEALRIFR 476



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 87/182 (47%), Gaps = 1/182 (0%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           R +     + L+  MK + L P   T+  +      AG      ++   M + GC+ S+ 
Sbjct: 394 RKKKLHEAYELLEEMKGVGLQPDVYTYNTLLSGLCKAGDFSAVDELLGHMIDDGCQPSVV 453

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           +F T++   CK  K ++A  +F+     + + + + YN + +  C  +  + A+++  EM
Sbjct: 454 TFGTLVHGYCKAGKTDEALRIFRSMDEARIQPNTVIYNTLIDFLCKSREVDVAIKLFDEM 513

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
            ++ +  N+TTYN +LKG       E+A+     M++ +C  + VT   ++     +GE 
Sbjct: 514 REKNVPANVTTYNALLKGLQDKKMAEKAFELMDRMREERCTPNYVTVDVLMEWLPEIGET 573

Query: 294 KR 295
           +R
Sbjct: 574 ER 575



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 21/172 (12%)

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
            E A  + + +      P+ + +N ++  L   G +    E    M+D   +P+V TY I
Sbjct: 112 AEAAGFLRDSLASGAPAPDISIFNSLLTALGRAGNLRGMTELFTSMRDASVKPDVVTYGI 171

Query: 388 LIRYFCDAGEIERGLELFEKM---GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL-- 442
           L+   C +G +   L++ ++M   GS VC P++   N ++         D L   G+L  
Sbjct: 172 LLNGLCKSGHVGDALKVLDRMSSPGSDVC-PDIAILNTVV---------DGLCKIGRLQQ 221

Query: 443 LIEMVDR------GFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            I  VD       G  P   T+N + +    +G+ G+A +I+    + G  P
Sbjct: 222 AIIFVDERMRHVHGCAPNAVTYNCLADAFCRVGDIGMACKIVARMEKEGVAP 273


>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
 gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
          Length = 845

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 169/351 (48%), Gaps = 4/351 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P    +A + +   +A + +  + +   M E G R S  ++  ++D  C+E+K ++A  +
Sbjct: 252 PDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEM 311

Query: 196 FK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            + +F       V++   + N +C   R + AL VL+ M  RG  PN+ TYN +++G+  
Sbjct: 312 LQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCN 371

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G++ +A     +M+      D VTY  ++ G  + G I+ A  +   M   G++    T
Sbjct: 372 EGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYT 431

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YNA+I  LCK    + A  +F+ +  +G  PN+ T+N +I GLC +G+ + A +F+ +M 
Sbjct: 432 YNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMV 491

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
              C P+  TY+  I + C     + GL    +M      P+   Y I+I  +   K+ +
Sbjct: 492 SAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLL--KERN 549

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
             LVA +   EMV  G  P   T+   +    + G    A+ +L   S+ G
Sbjct: 550 YGLVA-RTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNG 599



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 163/369 (44%), Gaps = 10/369 (2%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
             H  +     PT  T+  +           RA++    M   G R    +FN+++   C
Sbjct: 140 FAHMHRHAPPAPTAPTYNAVIRSLCRRADLARALRYLSLMVRSGWRPDAYTFNSLIVGYC 199

Query: 185 KEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           +  +V+ A +LF     RG F  DV+SY  +  G C   R ++A+E+  EM      P++
Sbjct: 200 RTNQVDVARDLFDKMPLRG-FAQDVVSYATLIEGLCEAGRIDEAVELFGEMD----QPDM 254

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
             Y  ++KG   A + EE       MK+         Y  +V       + K A  +   
Sbjct: 255 HMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQE 314

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M   G+ P V T  A+I   CK+  + +A+ V E M  +G  PN  TYN +++G C+ G+
Sbjct: 315 MFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGK 374

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           + +A+  + +M+     P+  TYN+LIR  C  G IE    L   M     + +  TYN 
Sbjct: 375 VHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNA 434

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           LI+++    ++D    A  L   +  RG  P   TFN ++NGL   G   +A + L    
Sbjct: 435 LINALCKDGRTDQ---ACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMV 491

Query: 483 RCGRLPRQF 491
             G  P  +
Sbjct: 492 SAGCTPDTY 500



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 156/366 (42%), Gaps = 4/366 (1%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           S  ++   +D   R R  +    ++  M    L P   T   +   Y   G+   A+++ 
Sbjct: 288 STRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVL 347

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLV 220
             M   GC+ ++ ++N ++   C E KV KA  L    R      D ++YN++  G C+ 
Sbjct: 348 ELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCID 407

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
                A  +L+ M   GL  +  TYN ++    + G+ ++A   F  ++ R  + + VT+
Sbjct: 408 GHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTF 467

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
            ++++G    G+   A    + MV+ G  P   TY++ I+ LCK    +  +    EM+ 
Sbjct: 468 NSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQ 527

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           K   P++  Y +VI  L             G M    C P+V TY   +R +C  G +  
Sbjct: 528 KDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNE 587

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
              +  +M       +   YN L+       ++D    A  +L +M     +P +FT+  
Sbjct: 588 AENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDH---AVSILKQMTSVASVPNQFTYFI 644

Query: 461 VLNGLL 466
           +L  L+
Sbjct: 645 LLRHLV 650



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 95/376 (25%), Positives = 163/376 (43%), Gaps = 21/376 (5%)

Query: 121 TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180
           + + L+  M+   L   Q T+  +       G+ D+A  +F S+   G + +  +FN+++
Sbjct: 412 SAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLI 471

Query: 181 DLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
           + LCK  K + A+  L K+       D  +Y+      C +K + + L  + EM+ + + 
Sbjct: 472 NGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVK 531

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           P+   Y IV+    +        R + EM    C  DVVTYTT +  + + G +  A NV
Sbjct: 532 PSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENV 591

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
              M   GV      YN ++         ++A+ + ++M     +PN  TY +++R L  
Sbjct: 592 LMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVR 651

Query: 360 TGEME-----------RALEFV------GRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
              +E           +A+E          MK +E  PN  TY+ ++  F + G  E   
Sbjct: 652 MRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEAT 711

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
            L   M       N D Y  L++      KS   L A  L+  M+  GF+P+  ++  +L
Sbjct: 712 SLVSLMKEDSISLNEDIYTALVTCFC---KSKRYLDAWVLVCSMIQHGFIPQLMSYQHLL 768

Query: 463 NGLLLIGNQGLAKEIL 478
           +GL+  G    AKEI 
Sbjct: 769 SGLICEGQTDKAKEIF 784



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 67/350 (19%), Positives = 152/350 (43%), Gaps = 20/350 (5%)

Query: 102 SPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           +P ++ ++  I+   +++  +   + +  M    + P+   + I+  + +         +
Sbjct: 496 TPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVAR 555

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWC 218
            +  M   GC   + ++ T +   C E ++ +A N L ++ +     D ++YN + +G  
Sbjct: 556 TWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHA 615

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK-----------------GYFRAGQIEEA 261
            + +T+ A+ +LK+M      PN  TY I+L+                 G ++A ++ + 
Sbjct: 616 SIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDV 675

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
           +  F  MKK +   +  TY++I+ GF   G  + A ++   M    +  +   Y A++  
Sbjct: 676 FGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTC 735

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
            CK     +A ++   M+  G++P   +Y  ++ GL   G+ ++A E     +  +  P+
Sbjct: 736 FCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPD 795

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
              + ++I      G  +   E+   +    C P+  TY +L   +  R+
Sbjct: 796 EIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQTYAMLTEELPDRE 845


>gi|296087160|emb|CBI33534.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 112/441 (25%), Positives = 209/441 (47%), Gaps = 16/441 (3%)

Query: 47  ILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSF 106
           I+ +T   T+ + LH  ++  +P+ V+  +K  +     A+ FF    +     HSP S+
Sbjct: 69  IIANTPSSTVEEVLHDTAIRVSPEDVEDSLKLSYGFPGSAVKFFRWSGHQLNDNHSPYSW 128

Query: 107 DHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE 166
           +  +D+  +   +  +W  V  MK   L  +  TFA I   YV A +   A+  F  M +
Sbjct: 129 NLVVDMLGKNFLFDAMWDAVKSMKKQGL-LSLATFASIFSSYVIADRVREAIMTFDVMEQ 187

Query: 167 HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKA 226
           +GC + + + N++L  +C++ +  +A    +  RG  + D  +Y ++  GW        A
Sbjct: 188 YGCPRDIVALNSLLSAICRDGRTVQAAEFLRNVRGLIRPDADTYAILLEGWESEGNCGAA 247

Query: 227 LEVLKEMV-DRGLNP-NLTTYNIVLKGYFRAGQ-IEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +   EMV D G +P N++ Y+  L           EA +FF  M+ R+C   +  Y   
Sbjct: 248 RQTFDEMVMDIGWDPGNVSAYDSFLNALLHGPDGRREAMKFFEIMRDRQCSPGMRFYRIG 307

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVL-PSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           +       + K A+ ++  M++  +  P    YN+MI + C  D++  A  + +EMV  G
Sbjct: 308 LQECVKTSDSKGAQLLWQTMLSRNICRPDTEMYNSMIALHCSCDNIVMARGMLDEMVCNG 367

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
             P+S TYNV+ R L    ++E A      M  +EC P++   N  +R + D G++ + +
Sbjct: 368 AFPDSETYNVLFRFLIRRRKLEEAFSIFSEMVQNECVPDLTNCNAAVRIYLDLGDVYKAI 427

Query: 403 ELF----EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           +++    E   SG+     +T N+L++ +   +  D +  A K   +M+ RG      T 
Sbjct: 428 KVWKYIIENHDSGL----EETGNLLVTGL---RDHDRIPEAVKYAKDMIVRGIKLTSSTL 480

Query: 459 NRVLNGLLLIGNQGLAKEILR 479
           +++ + L+ +G   +  E+LR
Sbjct: 481 SKLKHALVEVGKGPVYDELLR 501


>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 477

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 162/318 (50%), Gaps = 4/318 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T   + +     G+  RA+     +   G +    S+ T+++ LCK  + +    L
Sbjct: 161 PDAITLNTLIKGLCFCGEIKRALYFHDKVVAQGFQLDQVSYGTLINGLCKAGETKAVARL 220

Query: 196 FKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            +   G   K DV+ Y  I +  C  KR   A ++  EM+ +G++PN+ TYN ++ G+  
Sbjct: 221 LRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFCI 280

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G ++EA+    EMK +    DV T+  ++   G  G+I  A ++F+ M +  + P++ T
Sbjct: 281 MGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVT 340

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y ++I  LCK   +E AI + ++M  +G  P+  +Y +++  LC  G +E A +F   + 
Sbjct: 341 YTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHLL 400

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
                 NV+TYN++I   C AG     ++L  KM    C+P+  T+  +I ++F + ++D
Sbjct: 401 VKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPDAITFKTIICALFEKDEND 460

Query: 435 DLLVAGKLLIEMVDRGFM 452
               A K L EM+ RG +
Sbjct: 461 K---AEKFLREMIARGLL 475



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 148/305 (48%), Gaps = 4/305 (1%)

Query: 176 FNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           F+ IL  L K K      +LFK F+      ++ + N++ N +C +     A  V   ++
Sbjct: 96  FDNILSSLVKNKHYLTVISLFKQFQSNGVTPNLCTLNILINCFCHLAHITFAFSVFANIL 155

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
            RG +P+  T N ++KG    G+I+ A  F  ++  +  ++D V+Y T+++G    GE K
Sbjct: 156 KRGYHPDAITLNTLIKGLCFCGEIKRALYFHDKVVAQGFQLDQVSYGTLINGLCKAGETK 215

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
               +   +    V P V  Y  +I  LCK   V +A  ++ EM+ KG  PN  TYN +I
Sbjct: 216 AVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNTLI 275

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
            G C  G ++ A   +  MK     P+V T+NILI      G+I+  + LFE+M      
Sbjct: 276 YGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMF 335

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           PN+ TY  LI  +    K+  L  A  L  +M ++G  P  +++  +L+ L   G    A
Sbjct: 336 PNIVTYTSLIDGLC---KNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENA 392

Query: 475 KEILR 479
           K+  +
Sbjct: 393 KQFFQ 397



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 104/221 (47%), Gaps = 1/221 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L   M    + P   T+  +   +   G    A  +   M        + +FN ++D L 
Sbjct: 255 LYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALG 314

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           KE K+++A +LF+  + K    ++++Y  + +G C      +A+ + K+M ++G+ P++ 
Sbjct: 315 KEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVY 374

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           +Y I+L    + G++E A +FF  +  +   ++V TY  +++G    G      ++   M
Sbjct: 375 SYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKM 434

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
              G +P   T+  +I  L +KD  + A     EM+ +G +
Sbjct: 435 EGKGCMPDAITFKTIICALFEKDENDKAEKFLREMIARGLL 475



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 95/193 (49%), Gaps = 1/193 (0%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177
           + +  ++L++ MK  ++ P   TF I+ +     GK D A+ +F  M       ++ ++ 
Sbjct: 283 NLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYT 342

Query: 178 TILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
           +++D LCK   +E+A  L K  + +  + DV SY ++ +  C   R   A +  + ++ +
Sbjct: 343 SLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHLLVK 402

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           G + N+ TYN+++ G  +AG   +      +M+ + C  D +T+ TI+       E  +A
Sbjct: 403 GYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKA 462

Query: 297 RNVFDGMVNGGVL 309
                 M+  G+L
Sbjct: 463 EKFLREMIARGLL 475



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 1/168 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  ID   +        +L   MK  ++ P   T+  + +        +RA+ +   M
Sbjct: 305 TFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKM 364

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
            E G +  + S+  +LD LCK  ++E A   F+    K +  +V +YNV+ NG C     
Sbjct: 365 KEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLF 424

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
              +++  +M  +G  P+  T+  ++   F   + ++A +F  EM  R
Sbjct: 425 GDVMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKFLREMIAR 472



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 77/196 (39%), Gaps = 38/196 (19%)

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI--------------- 354
           P    ++ ++  L K       I +F++    G  PN  T N++I               
Sbjct: 91  PPTFHFDNILSSLVKNKHYLTVISLFKQFQSNGVTPNLCTLNILINCFCHLAHITFAFSV 150

Query: 355 --------------------RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
                               +GLC  GE++RAL F  ++     + +  +Y  LI   C 
Sbjct: 151 FANILKRGYHPDAITLNTLIKGLCFCGEIKRALYFHDKVVAQGFQLDQVSYGTLINGLCK 210

Query: 395 AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
           AGE +    L  K+      P++  Y  +I  +   K+  D   A  L  EM+ +G  P 
Sbjct: 211 AGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGD---ACDLYSEMIVKGISPN 267

Query: 455 KFTFNRVLNGLLLIGN 470
            FT+N ++ G  ++GN
Sbjct: 268 VFTYNTLIYGFCIMGN 283


>gi|224113413|ref|XP_002316488.1| predicted protein [Populus trichocarpa]
 gi|222865528|gb|EEF02659.1| predicted protein [Populus trichocarpa]
          Length = 941

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 177/365 (48%), Gaps = 4/365 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           LV  M+   +      +  + + Y      ++ + +F  + E G   S+ ++  ++++  
Sbjct: 421 LVREMEEEGIDAPLDIYHTMMDGYTMIRNEEKCLIVFKRLKECGFAPSVITYGCLINMYT 480

Query: 185 KEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  KV KA  + K+ +    K ++ +Y+++ NG+  +K    A  V ++++  GL P++ 
Sbjct: 481 KIGKVSKALEVSKMMKSVGIKHNMKTYSMLINGFLKLKDWTNAFAVFEDVIKDGLKPDVV 540

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            YN ++K +   G ++ A     EM+K +C     T+  I+HGF   GE++RA  +FD M
Sbjct: 541 LYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSRTFMPIIHGFARAGEMRRALEIFDMM 600

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G +P+V T+NA++  L +K  +E A+ + +EM   G  P+  TY  ++ G    G+ 
Sbjct: 601 RRSGCIPTVHTFNALVLGLVEKRKMEKAVEILDEMALAGVSPDEHTYTTIMHGYAALGDT 660

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
            +A E+  +M+++  + +V TY  L++  C +G ++  L +  +M +     N   YNIL
Sbjct: 661 GKAFEYFTKMRNEGLQLDVFTYEALLKACCKSGRMQSALAVTREMNAQKIPRNTFVYNIL 720

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I     R    D+  A  L+ +M   G  P   T+   +N     G+   A + +     
Sbjct: 721 IDGWARR---GDIWEAADLMQQMNQEGVQPDIHTYTSFINACCKAGDMLRATKTMEEMEA 777

Query: 484 CGRLP 488
            G  P
Sbjct: 778 AGVKP 782



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 174/376 (46%), Gaps = 4/376 (1%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           S   F   +   AR  D          M++  + P+   +  +   Y      + A+   
Sbjct: 293 SRREFGLMVGYYARRGDMHRARQTFESMRARGIDPSSHVYTSLIHAYAVGRDMEEALSCV 352

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF-KADVISYNVIANGWCLV 220
             M+E G   SL +++ ++    K    E A   FK  + +    +   Y  I   +C  
Sbjct: 353 RKMNEEGIEMSLVTYSIVVGGFAKFGNAEAADCWFKKAKERHTNLNAYIYGNIIYAYCQA 412

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
              ++A  +++EM + G++  L  Y+ ++ GY      E+    F  +K+      V+TY
Sbjct: 413 CNMDRAEALVREMEEEGIDAPLDIYHTMMDGYTMIRNEEKCLIVFKRLKECGFAPSVITY 472

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
             +++ +  +G++ +A  V   M + G+  ++ TY+ +I    K     NA  VFE+++ 
Sbjct: 473 GCLINMYTKIGKVSKALEVSKMMKSVGIKHNMKTYSMLINGFLKLKDWTNAFAVFEDVIK 532

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
            G  P+   YN +I+  C  G M+RA+  V  M+ + C P  +T+  +I  F  AGE+ R
Sbjct: 533 DGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSRTFMPIIHGFARAGEMRR 592

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
            LE+F+ M    C+P + T+N L+  +  ++K +    A ++L EM   G  P + T+  
Sbjct: 593 ALEIFDMMRRSGCIPTVHTFNALVLGLVEKRKMEK---AVEILDEMALAGVSPDEHTYTT 649

Query: 461 VLNGLLLIGNQGLAKE 476
           +++G   +G+ G A E
Sbjct: 650 IMHGYAALGDTGKAFE 665



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 161/351 (45%), Gaps = 36/351 (10%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           +D    +R+      +  R+K     P+  T+  +   Y   GK  +A+++   M   G 
Sbjct: 441 MDGYTMIRNEEKCLIVFKRLKECGFAPSVITYGCLINMYTKIGKVSKALEVSKMMKSVGI 500

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALE 228
           + ++ +++ +++   K K    A+ +F+ V +   K DV+ YN I   +C +   ++A+ 
Sbjct: 501 KHNMKTYSMLINGFLKLKDWTNAFAVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIH 560

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC--------------- 273
           ++KEM      P   T+  ++ G+ RAG++  A   F  M++  C               
Sbjct: 561 MVKEMQKERCRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLV 620

Query: 274 ---------EI-----------DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
                    EI           D  TYTTI+HG+  +G+  +A   F  M N G+   V 
Sbjct: 621 EKRKMEKAVEILDEMALAGVSPDEHTYTTIMHGYAALGDTGKAFEYFTKMRNEGLQLDVF 680

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           TY A+++  CK   +++A+ V  EM  +    N+  YN++I G    G++  A + + +M
Sbjct: 681 TYEALLKACCKSGRMQSALAVTREMNAQKIPRNTFVYNILIDGWARRGDIWEAADLMQQM 740

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
             +  +P++ TY   I   C AG++ R  +  E+M +    PN+ TY  LI
Sbjct: 741 NQEGVQPDIHTYTSFINACCKAGDMLRATKTMEEMEAAGVKPNVKTYTTLI 791



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 120/283 (42%), Gaps = 36/283 (12%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           +V  M+     PT +TF  I   +  AG+  RA++IF  M   GC  ++++FN ++  L 
Sbjct: 561 MVKEMQKERCRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLV 620

Query: 185 KEKKVEKA-----------------------------------YNLFKVFRGK-FKADVI 208
           +++K+EKA                                   +  F   R +  + DV 
Sbjct: 621 EKRKMEKAVEILDEMALAGVSPDEHTYTTIMHGYAALGDTGKAFEYFTKMRNEGLQLDVF 680

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           +Y  +    C   R   AL V +EM  + +  N   YNI++ G+ R G I EA     +M
Sbjct: 681 TYEALLKACCKSGRMQSALAVTREMNAQKIPRNTFVYNILIDGWARRGDIWEAADLMQQM 740

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
            +   + D+ TYT+ ++     G++ RA    + M   GV P+V TY  +I         
Sbjct: 741 NQEGVQPDIHTYTSFINACCKAGDMLRATKTMEEMEAAGVKPNVKTYTTLIHGWANASLP 800

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
           E A+  FEE+   G  P+   Y+ ++  L     +  A  + G
Sbjct: 801 EKALSCFEELKLAGLKPDKAVYHCLMTSLLSRATVAEAYIYSG 843



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 119/294 (40%), Gaps = 40/294 (13%)

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
           +R   P+   + +++  Y R G +  A + F  M+ R  +     YT+++H + V  +++
Sbjct: 287 ERIKKPSRREFGLMVGYYARRGDMHRARQTFESMRARGIDPSSHVYTSLIHAYAVGRDME 346

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
            A +    M   G+  S+ TY+ ++    K  + E A   F++   +    N+  Y  +I
Sbjct: 347 EALSCVRKMNEEGIEMSLVTYSIVVGGFAKFGNAEAADCWFKKAKERHTNLNAYIYGNII 406

Query: 355 RGLCHTGEMERALEFVGRMKDD---------------------------------EC--E 379
              C    M+RA   V  M+++                                 EC   
Sbjct: 407 YAYCQACNMDRAEALVREMEEEGIDAPLDIYHTMMDGYTMIRNEEKCLIVFKRLKECGFA 466

Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA 439
           P+V TY  LI  +   G++ + LE+ + M S     N+ TY++LI+      K  D   A
Sbjct: 467 PSVITYGCLINMYTKIGKVSKALEVSKMMKSVGIKHNMKTYSMLINGFL---KLKDWTNA 523

Query: 440 GKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR--LQSRCGRLPRQF 491
             +  +++  G  P    +N ++     +GN   A  +++   + RC    R F
Sbjct: 524 FAVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSRTF 577


>gi|115446101|ref|NP_001046830.1| Os02g0470000 [Oryza sativa Japonica Group]
 gi|47497415|dbj|BAD19472.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|47497530|dbj|BAD19582.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113536361|dbj|BAF08744.1| Os02g0470000 [Oryza sativa Japonica Group]
          Length = 649

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 104/391 (26%), Positives = 189/391 (48%), Gaps = 16/391 (4%)

Query: 82  HALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTF 141
           H  +AL   N +   P      ++    + +A R  D   +  L+  M      P + TF
Sbjct: 275 HVDQALDLLNTMLCKPNTVCYNAAL-KGLCIAERWED---IGELMAEMVRKGCSPNEATF 330

Query: 142 AIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG 201
           +++          D AV++   M ++GC     ++N I++ L +  +V+ A  L      
Sbjct: 331 SMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRLLNSM-- 388

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
             K D + +N +  G+C  +R + A E++ +M          T+NI++    + G +  A
Sbjct: 389 VCKPDALGFNAVLKGFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDMLCQNGLVNYA 448

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
            + F +M + +C  D+VTY+++++GF   G ++ A  +F  M      P + +YNA+++ 
Sbjct: 449 TQVFEQMPRYRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRSM---PCKPDIFSYNAVLKG 505

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           LC+    E+A  +  EMVGK   PN  T+N++I  LC  G ++RA+E + +M +    P+
Sbjct: 506 LCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPD 565

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
           + TYN LI  F + G ++  L+L   M    C P+  +YN  +  +   ++  D   A +
Sbjct: 566 IFTYNALINGFSEQGRLDDALKLLSTMS---CKPDAISYNSTLKGLCRAERWQD---AEE 619

Query: 442 LLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
           L+ EM+     P + TF +  N LL+    G
Sbjct: 620 LVAEMLRNKCTPNEVTF-KYANHLLMPNRAG 649



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 169/356 (47%), Gaps = 11/356 (3%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P + TFA     +   G  DRAV++   M  +GC   +  ++T+++   ++  V++A +L
Sbjct: 223 PNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDL 282

Query: 196 FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
                   K + + YN    G C+ +R     E++ EMV +G +PN  T+++++    + 
Sbjct: 283 LNTM--LCKPNTVCYNAALKGLCIAERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQN 340

Query: 256 GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
             ++ A     +M+K  CE D V Y  I++     G +  A  + + MV     P    +
Sbjct: 341 NLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRLLNSMV---CKPDALGF 397

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           NA+++  C+ +   +A  +  +M          T+N++I  LC  G +  A +   +M  
Sbjct: 398 NAVLKGFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDMLCQNGLVNYATQVFEQMPR 457

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
             C P++ TY+ L+  F + G +E  ++LF  M    C P++ +YN ++  +    + +D
Sbjct: 458 YRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRSMP---CKPDIFSYNAVLKGLCRAARWED 514

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
              AG+L+ EMV +   P + TFN ++N L   G    A E+L      G  P  F
Sbjct: 515 ---AGELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIF 567



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 142/291 (48%), Gaps = 12/291 (4%)

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           S NT++   C++ ++  A  +    R    A+V++Y  + +G+C   R + AL ++  M 
Sbjct: 126 SHNTLVAGYCRDGRLADAERVLGAARATGAANVVTYTALIDGYCRSGRLDDALRLIASM- 184

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
              + P+  TYN VLKG   A + EEA     EM + +C  + VT+ T +  F   G + 
Sbjct: 185 --PVAPDTYTYNTVLKGLCIAKKWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLD 242

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
           RA  + D M   G  P V  Y+ +I    ++  V+ A+ +   M+ K   PN+  YN  +
Sbjct: 243 RAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTMLCK---PNTVCYNAAL 299

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
           +GLC     E   E +  M    C PN  T+++LI   C    ++  +E+ E+M    C 
Sbjct: 300 KGLCIAERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCE 359

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           P+   YNI+I+S+  R + DD L   +LL  MV +   P    FN VL G 
Sbjct: 360 PDTVNYNIIINSLSERGRVDDAL---RLLNSMVCK---PDALGFNAVLKGF 404



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 159/339 (46%), Gaps = 24/339 (7%)

Query: 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFK 204
           AER + A +A  A  +              ++  ++D  C+  +++ A  L         
Sbjct: 143 AERVLGAARATGAANVV-------------TYTALIDGYCRSGRLDDALRLIASM--PVA 187

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
            D  +YN +  G C+ K+  +A E++ EM+     PN  T+   ++ + + G ++ A + 
Sbjct: 188 PDTYTYNTVLKGLCIAKKWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQL 247

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
             +M +  C  DVV Y+T+++GF   G + +A ++ + M+     P+   YNA ++ LC 
Sbjct: 248 LDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTML---CKPNTVCYNAALKGLCI 304

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
            +  E+   +  EMV KG  PN  T++++I  LC    ++ A+E + +M+   CEP+   
Sbjct: 305 AERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVN 364

Query: 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLI 444
           YNI+I    + G ++  L L   M   VC P+   +N ++      ++  D   A +L+ 
Sbjct: 365 YNIIINSLSERGRVDDALRLLNSM---VCKPDALGFNAVLKGFCRAERWHD---ASELIA 418

Query: 445 EMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           +M        + TFN +++ L   G    A ++     R
Sbjct: 419 QMFRDDCPLIEMTFNILIDMLCQNGLVNYATQVFEQMPR 457


>gi|414871694|tpg|DAA50251.1| TPA: hypothetical protein ZEAMMB73_705675 [Zea mays]
          Length = 1161

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 185/375 (49%), Gaps = 7/375 (1%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           S +++   ID   R R      +++  M+   + P++ T++ +   Y        A+ + 
Sbjct: 364 SVATYTTMIDGYCRNRRIDKALSILSEMQITGVMPSELTYSALLNGYCKVSMLGPAIYLM 423

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLV 220
             +   G   +      ++D  C+  ++ KA  + K +F      DVI+Y+ + NG C +
Sbjct: 424 EDLKSRGITINKTMRTILIDGFCQVGEISKAKQILKSMFEDGIDPDVITYSALINGMCRM 483

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
            + ++  E+L  M   G+ PN   Y  ++  Y +AG ++EA + F+++ +R    + V +
Sbjct: 484 AKMHETKEILSRMQKSGILPNDVLYTTLICYYCKAGYVKEALKHFVDIYRRGLVANPVIH 543

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
             ++H F   G I  A +    M    +     ++N +I   C + ++  A  V+++MV 
Sbjct: 544 NALLHAFYREGMITEAEHFRQYMSRMNISFDSVSFNRIIDSYCHRGNIVGAFSVYDDMVR 603

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
            GY PN  TY  ++RGLC  G + +A +F+  + D     + +T+N L+   C  G ++ 
Sbjct: 604 YGYSPNVCTYQNLLRGLCQGGHLVQARQFMSCLLDIPFAIDEKTFNALLLGICRYGTLDE 663

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
            L+L EKM    CLP++ TY IL+S  F RK    +L A  +L  M+++G +P    +  
Sbjct: 664 ALDLCEKMIKNNCLPDIHTYTILLSG-FCRK--GKILPALVILQMMLEKGVVPDTVAYTC 720

Query: 461 VLNGLLLIGNQGLAK 475
           +LNGL+   N+G  K
Sbjct: 721 LLNGLI---NEGQVK 732



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/388 (26%), Positives = 181/388 (46%), Gaps = 9/388 (2%)

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHR--MKSLSLGPTQKTFAIIAERYVSAGKADR 156
           +  SP S +  ++      + + VW  +     +   LG T  T  I+     + G+  +
Sbjct: 187 FKASPVSCNTILNALVEEGESKHVWLFLRESLARKFPLGVT--TCNILLNSLCTNGEFRK 244

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIAN 215
           A  +   M       S+ ++NTIL    K+ + + A  + + + R   +ADV +YN++ +
Sbjct: 245 AEDMLQKMKSCHISNSV-TYNTILHWYVKKGRFKAALCVLEDMERDSVQADVYTYNIMID 303

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
             C +KR+ +A  +LK M    L P+  TYN ++ G+FR G+I  A   F  M ++    
Sbjct: 304 KLCRIKRSTRAFLLLKRMRKDDLTPDECTYNTLINGFFREGKINHARYVFNHMLRQNLVP 363

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
            V TYTT++ G+     I +A ++   M   GV+PS  TY+A++   CK   +  AI + 
Sbjct: 364 SVATYTTMIDGYCRNRRIDKALSILSEMQITGVMPSELTYSALLNGYCKVSMLGPAIYLM 423

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
           E++  +G   N T   ++I G C  GE+ +A + +  M +D  +P+V TY+ LI   C  
Sbjct: 424 EDLKSRGITINKTMRTILIDGFCQVGEISKAKQILKSMFEDGIDPDVITYSALINGMCRM 483

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
            ++    E+  +M     LPN   Y  LI       K+  +  A K  +++  RG +   
Sbjct: 484 AKMHETKEILSRMQKSGILPNDVLYTTLICYYC---KAGYVKEALKHFVDIYRRGLVANP 540

Query: 456 FTFNRVLNGLLLIGNQGLAKEILRLQSR 483
              N +L+     G    A+   +  SR
Sbjct: 541 VIHNALLHAFYREGMITEAEHFRQYMSR 568



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 138/316 (43%), Gaps = 38/316 (12%)

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
           + + N +L+ LC   +  KA ++ +  +    ++ ++YN I + +    R   AL VL++
Sbjct: 226 VTTCNILLNSLCTNGEFRKAEDMLQKMKSCHISNSVTYNTILHWYVKKGRFKAALCVLED 285

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M    +  ++ TYNI++    R  +   A+     M+K     D  TY T+++GF   G+
Sbjct: 286 MERDSVQADVYTYNIMIDKLCRIKRSTRAFLLLKRMRKDDLTPDECTYNTLINGFFREGK 345

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           I  AR VF+ M+   ++PSVATY  MI   C+   ++ A+ +  EM   G MP+  TY+ 
Sbjct: 346 INHARYVFNHMLRQNLVPSVATYTTMIDGYCRNRRIDKALSILSEMQITGVMPSELTYSA 405

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           ++ G C    +  A+  +  +K      N     ILI  FC  GEI +            
Sbjct: 406 LLNGYCKVSMLGPAIYLMEDLKSRGITINKTMRTILIDGFCQVGEISK------------ 453

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
                                     A ++L  M + G  P   T++ ++NG+  +    
Sbjct: 454 --------------------------AKQILKSMFEDGIDPDVITYSALINGMCRMAKMH 487

Query: 473 LAKEILRLQSRCGRLP 488
             KEIL    + G LP
Sbjct: 488 ETKEILSRMQKSGILP 503



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/405 (23%), Positives = 175/405 (43%), Gaps = 6/405 (1%)

Query: 82   HALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTF 141
            H ++A  F + L   P +A    +F+  +    R         L  +M   +  P   T+
Sbjct: 625  HLVQARQFMSCLLDIP-FAIDEKTFNALLLGICRYGTLDEALDLCEKMIKNNCLPDIHTY 683

Query: 142  AIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VF 199
             I+   +   GK   A+ I   M E G      ++  +L+ L  E +V+ A  +F   + 
Sbjct: 684  TILLSGFCRKGKILPALVILQMMLEKGVVPDTVAYTCLLNGLINEGQVKAASYVFHEIIC 743

Query: 200  RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
            +    AD I+YN + NG+   +  N    ++ +M    + PN  +YNI++ GY + GQ  
Sbjct: 744  KEGLYADCIAYNSLMNGYLKSRNVNTIKRMMSDMYQNEVYPNSASYNILMHGYVKRGQFS 803

Query: 260  EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319
            ++   +  M ++    D VTY  ++ G    G I  A    + MV  G+ P    ++ +I
Sbjct: 804  KSLYLYKYMVRKGIRPDNVTYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDRLVFDILI 863

Query: 320  QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
                +K  + NA+ VF  M      P+S T++ +I GL   G ++ + + +  M     +
Sbjct: 864  TAFSEKSKMHNALQVFNCMKWLHMSPSSKTFSAMINGLIRKGYLDHSHKVLHEMLQVGLQ 923

Query: 380  PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA 439
            PN   Y  L+   C  GEI+R   L E+M +   +P     + +I  +    K ++ ++ 
Sbjct: 924  PNHTHYIALVNAKCRVGEIDRAFRLKEEMKAIGIVPAEVAESSIIRGLCRCGKLEEAVI- 982

Query: 440  GKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484
              +   M+  G +P   TF  +++ L        A  + RL   C
Sbjct: 983  --VFSSMMRSGMVPTVATFTTLMHSLCKESKIADALHLKRLMELC 1025



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/392 (21%), Positives = 166/392 (42%), Gaps = 40/392 (10%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   I+   R+        ++ RM+   + P    +  +   Y  AG    A+K F+ +
Sbjct: 472 TYSALINGMCRMAKMHETKEILSRMQKSGILPNDVLYTTLICYYCKAGYVKEALKHFVDI 531

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRT 223
           +  G   +    N +L    +E  + +A +  +   R     D +S+N I + +C     
Sbjct: 532 YRRGLVANPVIHNALLHAFYREGMITEAEHFRQYMSRMNISFDSVSFNRIIDSYCHRGNI 591

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
             A  V  +MV  G +PN+ TY  +L+G  + G + +A +F   +      ID  T+  +
Sbjct: 592 VGAFSVYDDMVRYGYSPNVCTYQNLLRGLCQGGHLVQARQFMSCLLDIPFAIDEKTFNAL 651

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G    G +  A ++ + M+    LP + TY  ++   C+K  +  A+++ + M+ KG 
Sbjct: 652 LLGICRYGTLDEALDLCEKMIKNNCLPDIHTYTILLSGFCRKGKILPALVILQMMLEKGV 711

Query: 344 MPNSTTYNVVIRGLCHTGEME--------------------------------RALEFVG 371
           +P++  Y  ++ GL + G+++                                R +  + 
Sbjct: 712 VPDTVAYTCLLNGLINEGQVKAASYVFHEIICKEGLYADCIAYNSLMNGYLKSRNVNTIK 771

Query: 372 RMKDD----ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           RM  D    E  PN  +YNIL+  +   G+  + L L++ M      P+  TY +LI  +
Sbjct: 772 RMMSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMVRKGIRPDNVTYRLLILGL 831

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
               +   + +A K L +MV  G  P +  F+
Sbjct: 832 ---SECGLIDIAVKFLEKMVLEGIFPDRLVFD 860



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 161/339 (47%), Gaps = 6/339 (1%)

Query: 117  RDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSF 176
            R+  T+  ++  M    + P   ++ I+   YV  G+  +++ ++  M   G R    ++
Sbjct: 765  RNVNTIKRMMSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMVRKGIRPDNVTY 824

Query: 177  NTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
              ++  L +   ++ A    +  V  G F  D + ++++   +    + + AL+V   M 
Sbjct: 825  RLLILGLSECGLIDIAVKFLEKMVLEGIF-PDRLVFDILITAFSEKSKMHNALQVFNCMK 883

Query: 235  DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
               ++P+  T++ ++ G  R G ++ + +   EM +   + +   Y  +V+    VGEI 
Sbjct: 884  WLHMSPSSKTFSAMINGLIRKGYLDHSHKVLHEMLQVGLQPNHTHYIALVNAKCRVGEID 943

Query: 295  RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
            RA  + + M   G++P+    +++I+ LC+   +E A++VF  M+  G +P   T+  ++
Sbjct: 944  RAFRLKEEMKAIGIVPAEVAESSIIRGLCRCGKLEEAVIVFSSMMRSGMVPTVATFTTLM 1003

Query: 355  RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
              LC   ++  AL     M+      +V +YN+LI   C    I   L+L+ +M S    
Sbjct: 1004 HSLCKESKIADALHLKRLMELCRLRVDVVSYNVLITGLCKDKHISDALDLYGEMKSKGLW 1063

Query: 415  PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
            PN+ TY  L  +M+   +  +     +LL ++ +RG +P
Sbjct: 1064 PNITTYITLTGAMYSTGRVQN---GEELLEDIEERGLIP 1099



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 115/252 (45%), Gaps = 5/252 (1%)

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M D G   +  + N +L      G+ +  W F  E   RK  + V T   +++     GE
Sbjct: 182 MDDCGFKASPVSCNTILNALVEEGESKHVWLFLRESLARKFPLGVTTCNILLNSLCTNGE 241

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
            ++A ++   M +  +  SV TYN ++    KK   + A+ V E+M       +  TYN+
Sbjct: 242 FRKAEDMLQKMKSCHISNSV-TYNTILHWYVKKGRFKAALCVLEDMERDSVQADVYTYNI 300

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           +I  LC      RA   + RM+ D+  P+  TYN LI  F   G+I     +F  M    
Sbjct: 301 MIDKLCRIKRSTRAFLLLKRMRKDDLTPDECTYNTLINGFFREGKINHARYVFNHMLRQN 360

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
            +P++ TY  +I      ++ D  L    +L EM   G MP + T++ +LNG   +   G
Sbjct: 361 LVPSVATYTTMIDGYCRNRRIDKAL---SILSEMQITGVMPSELTYSALLNGYCKVSMLG 417

Query: 473 LAKEILR-LQSR 483
            A  ++  L+SR
Sbjct: 418 PAIYLMEDLKSR 429



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/263 (19%), Positives = 108/263 (41%), Gaps = 48/263 (18%)

Query: 58   QTLHCPS-LHWTPQ------LVDQIIKRLW-NHALKALHFFNILSYHPTYAHSPSSFDHA 109
            Q  +C   LH +P       +++ +I++ + +H+ K LH    +   P + H    +   
Sbjct: 877  QVFNCMKWLHMSPSSKTFSAMINGLIRKGYLDHSHKVLHEMLQVGLQPNHTH----YIAL 932

Query: 110  IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
            ++   R+ +    + L   MK++ + P +   + I       GK + AV +F SM   G 
Sbjct: 933  VNAKCRVGEIDRAFRLKEEMKAIGIVPAEVAESSIIRGLCRCGKLEEAVIVFSSMMRSGM 992

Query: 170  RQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTNKALE 228
              ++ +F T++  LCKE K+  A +L ++    + + DV+SY                  
Sbjct: 993  VPTVATFTTLMHSLCKESKIADALHLKRLMELCRLRVDVVSY------------------ 1034

Query: 229  VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
                             N+++ G  +   I +A   + EMK +    ++ TY T+     
Sbjct: 1035 -----------------NVLITGLCKDKHISDALDLYGEMKSKGLWPNITTYITLTGAMY 1077

Query: 289  VVGEIKRARNVFDGMVNGGVLPS 311
              G ++    + + +   G++P+
Sbjct: 1078 STGRVQNGEELLEDIEERGLIPA 1100



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 86/200 (43%), Gaps = 10/200 (5%)

Query: 295 RARNVFDGMV------NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
           + R V D  V      + G   S  + N ++  L ++   ++  L   E + + +    T
Sbjct: 168 KERKVLDAAVAVLFMDDCGFKASPVSCNTILNALVEEGESKHVWLFLRESLARKFPLGVT 227

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           T N+++  LC  GE  +A + + +MK      +V TYN ++ ++   G  +  L + E M
Sbjct: 228 TCNILLNSLCTNGEFRKAEDMLQKMKSCHISNSV-TYNTILHWYVKKGRFKAALCVLEDM 286

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
                  ++ TYNI+I  +   K+S    +   LL  M      P + T+N ++NG    
Sbjct: 287 ERDSVQADVYTYNIMIDKLCRIKRSTRAFL---LLKRMRKDDLTPDECTYNTLINGFFRE 343

Query: 469 GNQGLAKEILRLQSRCGRLP 488
           G    A+ +     R   +P
Sbjct: 344 GKINHARYVFNHMLRQNLVP 363


>gi|242056139|ref|XP_002457215.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
 gi|241929190|gb|EES02335.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
          Length = 573

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 150/312 (48%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M    + P   TF ++   Y        A+K+F  M +HG   ++ ++ +++  LC
Sbjct: 248 LLKEMNQAGISPNVVTFNVLINGYCKESNITAAIKVFEEMRQHGIPANMVTYTSLVSGLC 307

Query: 185 KEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
           +E KVE +  L +       A + + N + NG+C      +A   +  M  +G+ PN+ T
Sbjct: 308 REGKVEDSMKLVEEMEELGLATLPTLNSVLNGFCKKGMMVEAEGWVDGMAQKGMKPNVVT 367

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           YN ++ GY R G+++EA      M  +    DV TY  ++ GF    + +    + D M 
Sbjct: 368 YNTLIDGYQRLGKMKEATAAKGAMAGKGISPDVKTYNCLITGFTTSTDWRSVSGLLDEMK 427

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
             GV   + TYN +I  LC K  V  A+ + +EMV  G  P   TYN +I G C  G+ +
Sbjct: 428 ETGVKADLVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHRTYNAIINGFCEKGDAK 487

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
            A +   RM+  +   NV T N+ ++YFC  G+++    +  +M     +PN  TY I+ 
Sbjct: 488 GAHDIRIRMEKCKKRANVVTCNVFLKYFCKMGKMDEANVVLNEMLEKGLVPNRITYEIIN 547

Query: 425 SSMFVRKKSDDL 436
           S M  +    D+
Sbjct: 548 SGMIEKGYVPDI 559



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/314 (30%), Positives = 161/314 (51%), Gaps = 8/314 (2%)

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEV---L 230
           +FN ++  LCK  ++ KA ++ K  RG      V++YN + +G+    R  K   V   L
Sbjct: 190 TFNIVISGLCKTGQLRKAGDVAKDMRGWGLMPSVVTYNTLIDGYYKWGRAGKMYHVDMLL 249

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
           KEM   G++PN+ T+N+++ GY +   I  A + F EM++     ++VTYT++V G    
Sbjct: 250 KEMNQAGISPNVVTFNVLINGYCKESNITAAIKVFEEMRQHGIPANMVTYTSLVSGLCRE 309

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           G+++ +  + + M   G L ++ T N+++   CKK  +  A    + M  KG  PN  TY
Sbjct: 310 GKVEDSMKLVEEMEELG-LATLPTLNSVLNGFCKKGMMVEAEGWVDGMAQKGMKPNVVTY 368

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           N +I G    G+M+ A    G M      P+V+TYN LI  F  + +      L ++M  
Sbjct: 369 NTLIDGYQRLGKMKEATAAKGAMAGKGISPDVKTYNCLITGFTTSTDWRSVSGLLDEMKE 428

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
                +L TYN+LI ++  +    ++  A KLL EMV+ G  P+  T+N ++NG    G+
Sbjct: 429 TGVKADLVTYNVLIGALCCK---GEVRKAVKLLDEMVEVGLEPKHRTYNAIINGFCEKGD 485

Query: 471 QGLAKEILRLQSRC 484
              A +I     +C
Sbjct: 486 AKGAHDIRIRMEKC 499



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 183/374 (48%), Gaps = 10/374 (2%)

Query: 102 SPSSFDHAIDLAA--RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           SP  F   I ++   +    R    +   M+   L P+  T+  + + Y   G+A +   
Sbjct: 185 SPDKFTFNIVISGLCKTGQLRKAGDVAKDMRGWGLMPSVVTYNTLIDGYYKWGRAGKMYH 244

Query: 160 IFL---SMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIAN 215
           + +    M++ G   ++ +FN +++  CKE  +  A  +F+  R     A++++Y  + +
Sbjct: 245 VDMLLKEMNQAGISPNVVTFNVLINGYCKESNITAAIKVFEEMRQHGIPANMVTYTSLVS 304

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
           G C   +   ++++++EM + GL   L T N VL G+ + G + EA  +   M ++  + 
Sbjct: 305 GLCREGKVEDSMKLVEEMEELGL-ATLPTLNSVLNGFCKKGMMVEAEGWVDGMAQKGMKP 363

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
           +VVTY T++ G+  +G++K A      M   G+ P V TYN +I          +   + 
Sbjct: 364 NVVTYNTLIDGYQRLGKMKEATAAKGAMAGKGISPDVKTYNCLITGFTTSTDWRSVSGLL 423

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
           +EM   G   +  TYNV+I  LC  GE+ +A++ +  M +   EP  +TYN +I  FC+ 
Sbjct: 424 DEMKETGVKADLVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHRTYNAIINGFCEK 483

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
           G+ +   ++  +M       N+ T N+ +       K D+   A  +L EM+++G +P +
Sbjct: 484 GDAKGAHDIRIRMEKCKKRANVVTCNVFLKYFCKMGKMDE---ANVVLNEMLEKGLVPNR 540

Query: 456 FTFNRVLNGLLLIG 469
            T+  + +G++  G
Sbjct: 541 ITYEIINSGMIEKG 554



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 80/154 (51%), Gaps = 1/154 (0%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177
           D+R+V  L+  MK   +     T+ ++       G+  +AVK+   M E G      ++N
Sbjct: 415 DWRSVSGLLDEMKETGVKADLVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHRTYN 474

Query: 178 TILDLLCKEKKVEKAYNL-FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
            I++  C++   + A+++  ++ + K +A+V++ NV    +C + + ++A  VL EM+++
Sbjct: 475 AIINGFCEKGDAKGAHDIRIRMEKCKKRANVVTCNVFLKYFCKMGKMDEANVVLNEMLEK 534

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
           GL PN  TY I+  G    G + +   +  ++ K
Sbjct: 535 GLVPNRITYEIINSGMIEKGYVPDIRGYAADVSK 568


>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
          Length = 754

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 104/357 (29%), Positives = 173/357 (48%), Gaps = 7/357 (1%)

Query: 135 GPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN 194
            PT  T+ I+   Y  A + D  + +F  +   G    + S+N ++D   KE +V+KA++
Sbjct: 115 APTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHD 174

Query: 195 LF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
           LF K+       +V++Y+ + NG C  K  +KA  VL++MV  G+ PN  TYN ++ GY 
Sbjct: 175 LFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYS 234

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
            +G  +E+ R F EM       DV    + +      G IK AR++FD MV  G  P V 
Sbjct: 235 TSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVI 294

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           +Y A++        +     +F  MV +G +P+   +N +I      G M+++L     M
Sbjct: 295 SYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDM 354

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
                 P++ T++ +I  FC  G ++  +E F  M      P+   Y+ LI     R+  
Sbjct: 355 TKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRR-- 412

Query: 434 DDLLVAGKLLIEMVDRGFMPR--KFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            DL+ A +L+ +M+ +G  P   KF F  ++N L   G     K+++ L    G+ P
Sbjct: 413 -DLVKAKELISDMLSKGIPPPCIKF-FTSIINNLCKEGRVAEGKDVVDLIIHTGQRP 467



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/395 (24%), Positives = 194/395 (49%), Gaps = 7/395 (1%)

Query: 97  PTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADR 156
           P  A +  +++  I+   R R       +  R+    LGP   ++  + + +   G+ D+
Sbjct: 112 PEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDK 171

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIAN 215
           A  +F  M E G   ++ +++++++ LCK K+++KA  + +   G   + + ++YN + +
Sbjct: 172 AHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIH 231

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
           G+       +++ V KEM    L P++   N  +    + G+I+EA   F  M  +  + 
Sbjct: 232 GYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKP 291

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
           DV++Y  ++HG+   G I    N+F+ MV  GV+P    +N +I    +   ++ ++L+F
Sbjct: 292 DVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMF 351

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
           E+M  +G  P+  T++ VI   C  G ++ A+E    M D    P+   Y+ LI+  C+ 
Sbjct: 352 EDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNR 411

Query: 396 GEIERGLELFEKMGS-GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM-VDRGFMP 453
            ++ +  EL   M S G+  P +  +  +I+++    +    +  GK ++++ +  G  P
Sbjct: 412 RDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGR----VAEGKDVVDLIIHTGQRP 467

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
              TFN +++G  L+GN   A  +L      G  P
Sbjct: 468 NLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEP 502



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 92/399 (23%), Positives = 178/399 (44%), Gaps = 42/399 (10%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   I+   + ++      ++ +M    + P   T+  +   Y ++G    +V++F  M
Sbjct: 190 TYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEM 249

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKR 222
                   + + N+ +  LCK  ++++A ++F   V +G  K DVISY  + +G+     
Sbjct: 250 SSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGP-KPDVISYGALLHGYATAGC 308

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
                 +   MV  G+ P+   +N ++  Y R G ++++   F +M K+    D++T++T
Sbjct: 309 IAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFST 368

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK- 341
           ++  F  +G +  A   F+ M++ GV P  A Y+ +IQ  C +  +  A  +  +M+ K 
Sbjct: 369 VISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKG 428

Query: 342 -----------------------------------GYMPNSTTYNVVIRGLCHTGEMERA 366
                                              G  PN  T+N ++ G C  G M+ A
Sbjct: 429 IPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEA 488

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
           +  +  M+    EP++ TYN L+  +C  G I+  L LF  M          +YNI++  
Sbjct: 489 VGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHG 548

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           +F  +++   +VA ++  EM++ G      T+  VL GL
Sbjct: 549 LFQARRT---IVAKEMFHEMIESGMAVSIHTYATVLGGL 584



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 151/319 (47%), Gaps = 13/319 (4%)

Query: 176 FNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           F +I++ LCKE +V +  ++   +     + ++I++N + +G+CLV    +A+ +L  M 
Sbjct: 437 FTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSME 496

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
             G+ P++ TYN ++ GY + G+I++A   F +M  ++  +  V+Y  I+HG        
Sbjct: 497 SVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTI 556

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
            A+ +F  M+  G+  S+ TY  ++  LC+ +  + A ++ E++       +  T+N+VI
Sbjct: 557 VAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVI 616

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
           R +   G  + A E    +      P + TY ++I         E    LF  M    C 
Sbjct: 617 RAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCT 676

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           P+    N +I  +       ++  AG  L ++  +G +P   T + +   + L    G  
Sbjct: 677 PDSRILNEIIRMLL---NKGEVAKAGNYLSKIDKKGILPEATTTSLL---IYLFSVNGKY 730

Query: 475 KEILRLQSRCGRLPRQFKL 493
           +E ++L      LP +++ 
Sbjct: 731 REYIKL------LPEKYRF 743



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 132/271 (48%), Gaps = 1/271 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   TF  + + Y   G    AV +  SM   G    + ++NT++D  CK  +++ A  L
Sbjct: 467 PNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTL 526

Query: 196 FK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F+ +   +     +SYN+I +G    +RT  A E+  EM++ G+  ++ TY  VL G  R
Sbjct: 527 FRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCR 586

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
               +EA     ++     + D++T+  ++     VG  + A+ +F  +   G++P++ T
Sbjct: 587 NNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYGLVPTILT 646

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y  MI  L K++S E+A  +F  M      P+S   N +IR L + GE+ +A  ++ ++ 
Sbjct: 647 YRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAGNYLSKID 706

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELF 405
                P   T ++LI  F   G+    ++L 
Sbjct: 707 KKGILPEATTTSLLIYLFSVNGKYREYIKLL 737



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 96/208 (46%), Gaps = 6/208 (2%)

Query: 114 ARLRDYRTVW-TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
            R+ D  T++  ++H+  +L    T  ++ II      A +   A ++F  M E G   S
Sbjct: 518 GRIDDALTLFRDMLHKRVTL----TSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVS 573

Query: 173 LNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLK 231
           ++++ T+L  LC+    ++A  L  K+F    K D++++N++      V R  +A E+  
Sbjct: 574 IHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFA 633

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
            +   GL P + TY +++    +    E+A   F  M+K  C  D      I+      G
Sbjct: 634 AISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNKG 693

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMI 319
           E+ +A N    +   G+LP   T + +I
Sbjct: 694 EVAKAGNYLSKIDKKGILPEATTTSLLI 721


>gi|125555457|gb|EAZ01063.1| hypothetical protein OsI_23091 [Oryza sativa Indica Group]
          Length = 552

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 102/348 (29%), Positives = 169/348 (48%), Gaps = 6/348 (1%)

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
            L P + T++ +      AG+ D AV +   M   G   +  +FN +L  + +   V+ A
Sbjct: 114 DLAPDKFTYSTVVSALADAGRVDDAVALVHEMVADGVVAA-EAFNPVLRAMLRAGDVKGA 172

Query: 193 YNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
             LF+  + K       +YNV+ +G  +  R   A+ V++ M   G+ P + TY  V+ G
Sbjct: 173 AKLFEFMQLKGCVPTAATYNVLVHGLLVCGRAGAAMGVMRRMEREGVVPGVMTYGAVVDG 232

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
             R G++++AW+   EM++     +   Y+T++ GF   GEI  A  V++ MV   V P+
Sbjct: 233 LVRCGRVKDAWKVAEEMERNGLARNEFVYSTVITGFCKSGEIDCALKVWEAMVASPVRPN 292

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
           V  Y+AMI  L     +  A L+F EM+     PN  TY  +I+G    G+  RAL    
Sbjct: 293 VVLYSAMIGGLANFGKMTEAELLFREMIDSKCAPNIITYGSMIQGYFKIGDTSRALSVWE 352

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
            M    C PN  +Y+ILI   C+ G ++  + +++ M    C P+   Y  +I  + V  
Sbjct: 353 EMIGAGCMPNAVSYSILINGLCNVGRLKDAMMVWKHMLDRGCAPDTIAYTSMIKGLCVSG 412

Query: 432 KSDDLLVAGKLLIEMVDRGFM-PRKFTFNRVLNGLLLIGNQGLAKEIL 478
             D  L   +L  +M+  G   P   ++N +L+GLLL  +   A ++L
Sbjct: 413 MVDGGL---RLFYDMLASGHADPDVISYNVLLDGLLLAKDLPRAMDLL 457



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 174/350 (49%), Gaps = 3/350 (0%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           +  +F+  +    R  D +    L   M+     PT  T+ ++    +  G+A  A+ + 
Sbjct: 152 AAEAFNPVLRAMLRAGDVKGAAKLFEFMQLKGCVPTAATYNVLVHGLLVCGRAGAAMGVM 211

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLV 220
             M   G    + ++  ++D L +  +V+ A+ + +   R     +   Y+ +  G+C  
Sbjct: 212 RRMEREGVVPGVMTYGAVVDGLVRCGRVKDAWKVAEEMERNGLARNEFVYSTVITGFCKS 271

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
              + AL+V + MV   + PN+  Y+ ++ G    G++ EA   F EM   KC  +++TY
Sbjct: 272 GEIDCALKVWEAMVASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMIDSKCAPNIITY 331

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
            +++ G+  +G+  RA +V++ M+  G +P+  +Y+ +I  LC    +++A++V++ M+ 
Sbjct: 332 GSMIQGYFKIGDTSRALSVWEEMIGAGCMPNAVSYSILINGLCNVGRLKDAMMVWKHMLD 391

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALE-FVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
           +G  P++  Y  +I+GLC +G ++  L  F   +     +P+V +YN+L+     A ++ 
Sbjct: 392 RGCAPDTIAYTSMIKGLCVSGMVDGGLRLFYDMLASGHADPDVISYNVLLDGLLLAKDLP 451

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
           R ++L  +M    C P+  T NI +      ++     + G L++ + DR
Sbjct: 452 RAMDLLNRMLDQGCDPDTVTCNIFLREFGAGERKGREFLEG-LVVRLCDR 500



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 134/298 (44%), Gaps = 12/298 (4%)

Query: 199 FRGKFKADVISYNVIANGWC--LVKRTNK-----ALEVLKEMV-DRGLNPNLTTYNIVLK 250
           F G+    ++S+N++    C  LV R  +     AL +L E++    L P+  TY+ V+ 
Sbjct: 68  FPGRLAPTLLSFNLLLKCVCSSLVPRDPRRYLDVALRILHEIIPGWDLAPDKFTYSTVVS 127

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
               AG++++A     EM      +    +  ++      G++K A  +F+ M   G +P
Sbjct: 128 ALADAGRVDDAVALVHEMVADGV-VAAEAFNPVLRAMLRAGDVKGAAKLFEFMQLKGCVP 186

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           + ATYN ++  L        A+ V   M  +G +P   TY  V+ GL   G ++ A +  
Sbjct: 187 TAATYNVLVHGLLVCGRAGAAMGVMRRMEREGVVPGVMTYGAVVDGLVRCGRVKDAWKVA 246

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
             M+ +    N   Y+ +I  FC +GEI+  L+++E M +    PN+  Y+ +I  +   
Sbjct: 247 EEMERNGLARNEFVYSTVITGFCKSGEIDCALKVWEAMVASPVRPNVVLYSAMIGGLANF 306

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            K  +   A  L  EM+D    P   T+  ++ G   IG+   A  +       G +P
Sbjct: 307 GKMTE---AELLFREMIDSKCAPNIITYGSMIQGYFKIGDTSRALSVWEEMIGAGCMP 361



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/319 (19%), Positives = 132/319 (41%), Gaps = 55/319 (17%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   +D   R    +  W +   M+   L   +  ++ +   +  +G+ D A+K++ +M
Sbjct: 225 TYGAVVDGLVRCGRVKDAWKVAEEMERNGLARNEFVYSTVITGFCKSGEIDCALKVWEAM 284

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRT 223
                R ++  ++ ++  L    K+ +A  LF+ +   K   ++I+Y  +  G+  +  T
Sbjct: 285 VASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMIDSKCAPNIITYGSMIQGYFKIGDT 344

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           ++AL V +EM+  G  PN  +Y+I++ G    G++++A   +  M  R C  D + YT++
Sbjct: 345 SRALSVWEEMIGAGCMPNAVSYSILINGLCNVGRLKDAMMVWKHMLDRGCAPDTIAYTSM 404

Query: 284 VHGFGVVGEIKRARNVF-DGMVNGGVLPSVATYNAMIQVL-------------------- 322
           + G  V G +     +F D + +G   P V +YN ++  L                    
Sbjct: 405 IKGLCVSGMVDGGLRLFYDMLASGHADPDVISYNVLLDGLLLAKDLPRAMDLLNRMLDQG 464

Query: 323 CKKDSVENAILVFE---------------------------------EMVGKGYMPNSTT 349
           C  D+V   I + E                                  M+ K  +P +  
Sbjct: 465 CDPDTVTCNIFLREFGAGERKGREFLEGLVVRLCDRRRNMAAGEVLMVMLAKYIVPEAPI 524

Query: 350 YNVVIRGLCHTGEMERALE 368
           + +V+R +C    + R ++
Sbjct: 525 WEMVVRDVCRRKRVWRVID 543


>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 164/343 (47%), Gaps = 4/343 (1%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           W     +      P    F I+   +   G    A  +F  +   G R S+ SFNT++  
Sbjct: 211 WEFYLEVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISG 270

Query: 183 LCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
            C+ K VE+ + L  V    +   DV +Y+ + NG C   R  +A  +  EM + GL PN
Sbjct: 271 YCRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPN 330

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
             T+  ++ G  + G+I+ A R F  MK R    D++TY  +++G    G++K AR + +
Sbjct: 331 GVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLN 390

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M+  G  P   T+  ++   CK   +++A+ + + MV +G   +   +  +I GLC  G
Sbjct: 391 EMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDG 450

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
            +  A   +  M     +P+  TY ++I  FC  G+++ G +L ++M     +P + TYN
Sbjct: 451 RVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYN 510

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
            L++      K   +  A  LL  M++   +P   TFN +L+G
Sbjct: 511 ALMNGFC---KQGQMKNAKMLLHAMLNMEVVPNDITFNILLDG 550



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 160/321 (49%), Gaps = 4/321 (1%)

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGW 217
           + +L + ++G   ++  FN ++   CK   V  A  +F ++ R   +  V+S+N + +G+
Sbjct: 212 EFYLEVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGY 271

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           C  K   +   +   M    ++P++ TY+ ++ G  +  ++EEA   F EM +     + 
Sbjct: 272 CRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNG 331

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           VT+TT++ G    G+I  A   F+ M + G+ P + TYNA+I  LC+   ++ A  +  E
Sbjct: 332 VTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNE 391

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M+G G+ P+  T+  ++ G C  G+M+ ALE   RM ++  E +   +  LI   C  G 
Sbjct: 392 MIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGR 451

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           +     + + M S    P+  TY ++I       K  D+ +  KLL EM   G +P   T
Sbjct: 452 VRDAERMLKDMLSAGHKPDDPTYTMVIDCFC---KKGDVKMGAKLLKEMQRDGRVPGVVT 508

Query: 458 FNRVLNGLLLIGNQGLAKEIL 478
           +N ++NG    G    AK +L
Sbjct: 509 YNALMNGFCKQGQMKNAKMLL 529



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 139/294 (47%), Gaps = 1/294 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           SF+  I    R ++    + L   M+S  + P   T++ +        + + A  +F  M
Sbjct: 263 SFNTLISGYCRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEM 322

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
            E G   +  +F T++D  CK  K++ A   F++ + +  + D+I+YN + NG C     
Sbjct: 323 CEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDL 382

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A ++L EM+  G  P+  T+  ++ G  + G ++ A      M +   E+D V +T +
Sbjct: 383 KEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTAL 442

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G    G ++ A  +   M++ G  P   TY  +I   CKK  V+    + +EM   G 
Sbjct: 443 ISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGR 502

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           +P   TYN ++ G C  G+M+ A   +  M + E  PN  T+NIL+   C  G 
Sbjct: 503 VPGVVTYNALMNGFCKQGQMKNAKMLLHAMLNMEVVPNDITFNILLDGHCKHGS 556



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 109/221 (49%), Gaps = 3/221 (1%)

Query: 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
           Q    W F+LE+       +V  +  ++HGF  +G++  AR VFD +   G+ PSV ++N
Sbjct: 206 QPGHCWEFYLEVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFN 265

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
            +I   C+  +VE   ++   M  +   P+  TY+ +I GLC    +E A      M + 
Sbjct: 266 TLISGYCRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEM 325

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
              PN  T+  LI   C  G+I+  L  FE M      P+L TYN LI+ +    +  DL
Sbjct: 326 GLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLC---RDGDL 382

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
             A KLL EM+  GF P K TF  +++G    G+   A EI
Sbjct: 383 KEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEI 423


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 119/470 (25%), Positives = 206/470 (43%), Gaps = 41/470 (8%)

Query: 55  TLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSS--------- 105
           TL  +L        P+LV  ++KRL + A  A+++F          H P +         
Sbjct: 78  TLENSLSALGEKPLPELVIGVLKRLKD-ANTAVNYFQWAEKQTEKVHCPEAYNSLLMVMA 136

Query: 106 ----FDH-------------------AIDLAA---RLRDYRTVWTLVHRMKSLSLGPTQK 139
               FDH                   +I+L A   + R  R  + ++  M+     P   
Sbjct: 137 RNTEFDHLERILEEMSLSGFGPSSNISIELVANCVKSRKLREAFDIIQTMRKFKFRPAFS 196

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
            + I+        + D  + +F  M E G   +++ F T++ +  +E +V+ A +L    
Sbjct: 197 AYTILIGALSEVREPDPMLILFHQMQELGYEVNVHLFTTLIRVFAREGRVDAALSLLDEM 256

Query: 200 RG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
           +     AD++ YNV  + +    + + + +   EM   GL P+  TY  ++    +A ++
Sbjct: 257 KSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRL 316

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           +EA   F ++++ +       Y T++ G+G  G+   A  + +     G +PSV  YN +
Sbjct: 317 DEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCI 376

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           +  L KK  VE A+ +FEEM  +  +PN  TYN++I  LC  G++  ALE    M+    
Sbjct: 377 LTCLGKKRRVEEALRIFEEM-KRDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGL 435

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
            PNV T NI+I   C A ++E    +FE M   VC PN  T++ LI  +    + DD   
Sbjct: 436 FPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDD--- 492

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           A  L  +M+D G +P    +  ++      G +    +I +     G  P
Sbjct: 493 AYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSP 542



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 162/367 (44%), Gaps = 36/367 (9%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F   ID   +       ++L  +M      P    +  +   +   G+ +   KI+  M
Sbjct: 476 TFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEM 535

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK----------------VFRGKFKA--- 205
              GC   L   NT +D + K  + EK   LF+                +  G  KA   
Sbjct: 536 VHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLA 595

Query: 206 -----------------DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
                            D  +YN + +G+C   + NKA ++L+EM  +G  P + TY  V
Sbjct: 596 NETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSV 655

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           + G  +  +++EA+  F E K    +++VV Y++++ GFG VG I  A  + + ++  G+
Sbjct: 656 IDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGL 715

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
            P+V T+N ++  L K + +  A++ F+ M      PN  TY+++I GLC   +  +A  
Sbjct: 716 TPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFV 775

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
           F   M+    +PN  TY  +I     AG I     LF +  +   +P+  +YN +I  + 
Sbjct: 776 FWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLS 835

Query: 429 VRKKSDD 435
              K+ D
Sbjct: 836 SANKAMD 842



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 106/376 (28%), Positives = 176/376 (46%), Gaps = 8/376 (2%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           F   I + AR        +L+  MKS SL      + +  + +  AGK D + K F  M 
Sbjct: 233 FTTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMK 292

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKAD-VISYNVIANGWCLVKRTN 224
            HG      ++ +++ +LCK  ++++A  LF+      K     +YN +  G+    + +
Sbjct: 293 SHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFD 352

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           +A  +L+    +G  P++  YN +L    +  ++EEA R F EM KR    +V TY  ++
Sbjct: 353 EAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEM-KRDAVPNVPTYNILI 411

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
                 G++  A  + D M   G+ P+V T N MI  LCK   +E A  +FE M  K   
Sbjct: 412 DMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCT 471

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           PN+ T++ +I GL   G ++ A     +M D    P    Y  LIR F   G  E G ++
Sbjct: 472 PNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKI 531

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           +++M    C P+L   N  +  +F   K+ +      L  E+   GF+P   +++ +++G
Sbjct: 532 YKEMVHTGCSPDLTLINTYMDCVF---KAGETEKGRALFREINAHGFIPDARSYSILIHG 588

Query: 465 LLLIGNQGLAKEILRL 480
           L+     GLA E   L
Sbjct: 589 LV---KAGLANETYEL 601



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 170/363 (46%), Gaps = 16/363 (4%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
            D A++L  +L   R V             P    +  +   Y SAGK D A  +     
Sbjct: 316 LDEAVELFEQLEQNRKV-------------PCAYAYNTMIMGYGSAGKFDEAYGLLERQK 362

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNK 225
             G   S+ ++N IL  L K+++VE+A  +F+  +     +V +YN++ +  C   + N 
Sbjct: 363 AKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYNILIDMLCREGKLNA 422

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
           ALE+  +M   GL PN+ T NI++    +A ++EEA   F  M  + C  + VT+++++ 
Sbjct: 423 ALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLID 482

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
           G G  G +  A ++++ M++ G +P    Y ++I+   K    E+   +++EMV  G  P
Sbjct: 483 GLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSP 542

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           + T  N  +  +   GE E+       +      P+ ++Y+ILI     AG      ELF
Sbjct: 543 DLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELF 602

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
             M    C+ +   YN +I       KS  +  A +LL EM  +G  P   T+  V++GL
Sbjct: 603 YAMKEQGCVLDTHAYNAVIDGFC---KSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGL 659

Query: 466 LLI 468
             I
Sbjct: 660 AKI 662



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 172/402 (42%), Gaps = 39/402 (9%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID+  R         +   M+   L P   T  I+ +R   A K + A  IF  M
Sbjct: 406 TYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGM 465

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
            +  C  +  +F++++D L K  +V+ AY+L+ K+         I Y  +   +    R 
Sbjct: 466 DDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRK 525

Query: 224 NKALEVLKEMVDRGLNPNLT-----------------------------------TYNIV 248
               ++ KEMV  G +P+LT                                   +Y+I+
Sbjct: 526 EDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSIL 585

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           + G  +AG   E +  F  MK++ C +D   Y  ++ GF   G++ +A  + + M   G 
Sbjct: 586 IHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGH 645

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
            P+V TY ++I  L K D ++ A ++FEE    G   N   Y+ +I G    G ++ A  
Sbjct: 646 PPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYL 705

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
            +  +      PNV T+N L+     A EI   L  F+ M    C PN  TY+ILI+ + 
Sbjct: 706 IMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLC 765

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
             +K +   V      EM   G  P   T+  +++GL   GN
Sbjct: 766 RVRKFNKAFV---FWQEMQKLGLKPNTITYTTMISGLAKAGN 804



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 149/322 (46%), Gaps = 1/322 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P  ++++I+    V AG A+   ++F +M E GC    +++N ++D  CK  KV KAY L
Sbjct: 577 PDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQL 636

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            +  + K     V++Y  + +G   + R ++A  + +E    G+  N+  Y+ ++ G+ +
Sbjct: 637 LEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGK 696

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G+I+EA+    E+ ++    +V T+  ++       EI  A   F  M +    P+  T
Sbjct: 697 VGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQIT 756

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y+ +I  LC+      A + ++EM   G  PN+ TY  +I GL   G +  A     R K
Sbjct: 757 YSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFK 816

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
            +   P+  +YN +I     A +      LFE+     C  +  T  +L+ ++   +  +
Sbjct: 817 ANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIHTKTCVVLLDALHKAECLE 876

Query: 435 DLLVAGKLLIEMVDRGFMPRKF 456
              + G +L E        R F
Sbjct: 877 QAAIVGAVLKETAKSQHASRSF 898



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/229 (20%), Positives = 87/229 (37%), Gaps = 34/229 (14%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           +   ID   ++      + ++  +    L P   T+  + +  V A + + A+  F SM 
Sbjct: 687 YSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMK 746

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNK 225
           +  C  +  +++ +++ LC+ +K  KA+    VF                 W        
Sbjct: 747 DLKCPPNQITYSILINGLCRVRKFNKAF----VF-----------------W-------- 777

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
                +EM   GL PN  TY  ++ G  +AG I EA   F   K      D  +Y  ++ 
Sbjct: 778 -----QEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIE 832

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
           G     +   A  +F+     G      T   ++  L K + +E A +V
Sbjct: 833 GLSSANKAMDAYALFEETRLKGCNIHTKTCVVLLDALHKAECLEQAAIV 881


>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Glycine max]
          Length = 642

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 112/412 (27%), Positives = 188/412 (45%), Gaps = 76/412 (18%)

Query: 98  TYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRA 157
           +Y     SF   I+  A   D+R++  ++H+MK       +K F ++ + Y  A   ++A
Sbjct: 56  SYKLGDLSFYSLIESHASSLDFRSLEEVLHQMKRERRVFLEKNFIVMFKAYGKAHLPEKA 115

Query: 158 VKIFLSM-HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG 216
           V +F  M  E  C+Q++ SFN++L+++ +E              G F             
Sbjct: 116 VDLFHRMWGEFQCKQTVKSFNSVLNVIVQE--------------GLF------------- 148

Query: 217 WCLVKRTNKALEVLKEMV-DRGLN--PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
                  N+ALE    +V  + LN  PN  T+N+V+K   R G +++A   F E+  R C
Sbjct: 149 -------NRALEFYNHVVASKSLNIHPNALTFNLVIKAMCRLGLVDKAIEVFREIPLRNC 201

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
             D  TY+T++HG      I  A ++ D M   G  P++  +N +I  LCKK  +  A  
Sbjct: 202 APDNYTYSTLMHGLCKEERIDEAVSLLDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAK 261

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF- 392
           + + M  KG +PN  TYN ++ GLC  G++E+A+  + +M  ++C PN  T+  LI  F 
Sbjct: 262 LVDNMFLKGCVPNEVTYNALVHGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFV 321

Query: 393 ----------------------------------CDAGEIERGLELFEKMGSGVCLPNLD 418
                                             C  G+  + +EL+++M    C PN  
Sbjct: 322 MQGRASDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTI 381

Query: 419 TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
            Y+ LI  +    K D+   A   L EM ++G++P  FT++ ++ G    G+
Sbjct: 382 VYSALIDGLCREGKLDE---ARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGD 430



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 188/353 (53%), Gaps = 9/353 (2%)

Query: 130 KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV 189
           KSL++ P   TF ++ +     G  D+A+++F  +    C     +++T++  LCKE+++
Sbjct: 162 KSLNIHPNALTFNLVIKAMCRLGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEERI 221

Query: 190 EKAYNLFKVFR--GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           ++A +L    +  G F  +++++NV+ +  C      +A +++  M  +G  PN  TYN 
Sbjct: 222 DEAVSLLDEMQVEGTF-PNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNA 280

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ G    G++E+A     +M   KC  + VT+ T+++GF + G       V   +   G
Sbjct: 281 LVHGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARG 340

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
              +   Y+++I  LCK+     A+ +++EMVGKG  PN+  Y+ +I GLC  G+++ A 
Sbjct: 341 HRGNEYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEAR 400

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
            F+  MK+    PN  TY+ L+R + +AG+  + + ++++M +  C+ N   Y+ILI+ +
Sbjct: 401 GFLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGL 460

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
               K  + L+  K   +M+ RG       ++ +++G     N  L ++ L+L
Sbjct: 461 CKDGKFMEALMVWK---QMLSRGIKLDVVAYSSMIHGFC---NANLVEQGLKL 507



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 180/374 (48%), Gaps = 8/374 (2%)

Query: 97  PTYAHSPSSFDHAIDLAARLRDYRT--VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKA 154
           P    +P ++ ++  +    ++ R     +L+  M+     P    F ++       G  
Sbjct: 197 PLRNCAPDNYTYSTLMHGLCKEERIDEAVSLLDEMQVEGTFPNLVAFNVLISALCKKGDL 256

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVI 213
            RA K+  +M   GC  +  ++N ++  LC + K+EKA +L  ++   K   + +++  +
Sbjct: 257 GRAAKLVDNMFLKGCVPNEVTYNALVHGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTL 316

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
            NG+ +  R +    VL  +  RG   N   Y+ ++ G  + G+  +A   + EM  + C
Sbjct: 317 INGFVMQGRASDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKFNQAMELWKEMVGKGC 376

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
             + + Y+ ++ G    G++  AR     M N G LP+  TY+++++   +      AIL
Sbjct: 377 GPNTIVYSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAIL 436

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           V++EM     + N   Y+++I GLC  G+   AL    +M     + +V  Y+ +I  FC
Sbjct: 437 VWKEMANNNCIHNEVCYSILINGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFC 496

Query: 394 DAGEIERGLELFEKM--GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
           +A  +E+GL+LF +M     V  P++ TYNIL+++  ++K    +  A  +L  M+D+G 
Sbjct: 497 NANLVEQGLKLFNQMLCQGPVVQPDVITYNILLNAFCIQK---SIFRAIDILNIMLDQGC 553

Query: 452 MPRKFTFNRVLNGL 465
            P   T +  L  L
Sbjct: 554 DPDFITCDIFLKTL 567



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 107/232 (46%), Gaps = 24/232 (10%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
            +  MK+    P   T++ +   Y  AG + +A+ ++  M  + C  +   ++ +++ LC
Sbjct: 402 FLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLC 461

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG--LNPN 241
           K+ K  +A  ++K    +  K DV++Y+ + +G+C      + L++  +M+ +G  + P+
Sbjct: 462 KDGKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQGLKLFNQMLCQGPVVQPD 521

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG------------- 288
           + TYNI+L  +     I  A      M  + C+ D +T    +                 
Sbjct: 522 VITYNILLNAFCIQKSIFRAIDILNIMLDQGCDPDFITCDIFLKTLRENMNPPQDGREFL 581

Query: 289 ---VVGEIKRARNV-----FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
              VV  +KR R +      + M++  +LP  +T+  ++Q +CK  +V  AI
Sbjct: 582 DELVVRLVKRQRTIGASKIIEVMMHKFLLPKASTWAMVVQQVCKPKNVRKAI 633


>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
 gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
          Length = 722

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 109/392 (27%), Positives = 184/392 (46%), Gaps = 7/392 (1%)

Query: 103 PSSFDHAIDLA--ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P+   H + +   AR  D      +V  M+ LS   +  T+  +    ++ G   +A  +
Sbjct: 272 PNDVTHNVVITGLARKGDLEEAAEMVEGMR-LSKKASSFTYNPLITGLLAKGFVKKADDL 330

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCL 219
            L M   G   ++ ++N ++  L +  +VE A   F   R    + DVI+YN + NG+C 
Sbjct: 331 QLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCK 390

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
                +AL +  ++   GL P + TYNI++ GY R G +EEA R   EM ++ C  DV T
Sbjct: 391 AGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCT 450

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           YT ++ G      +  AR  FD M++ G+ P    YN  I+      ++  A  + E M+
Sbjct: 451 YTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMM 510

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            +G   ++ TYN++I GLC TG +  A +   +M  +  +P+  TY  LI   C+ G + 
Sbjct: 511 LEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLR 570

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
              + F+ M S    P+  TY + I +   R    +L  A     +M++ G  P + T+N
Sbjct: 571 EARKFFKDMISDGLAPSAVTYTVFIHAYCRRG---NLYSAYGWFRKMLEEGVEPNEITYN 627

Query: 460 RVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
            +++ L   G   LA          G +P ++
Sbjct: 628 VLIHALCRTGRTQLAYRHFHEMLERGLVPNKY 659



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 170/344 (49%), Gaps = 4/344 (1%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
            M++  + PT  T+  +    + +G+ + A   F+ M   G +  + ++N++L+  CK  
Sbjct: 333 EMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAG 392

Query: 188 KVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
            +++A  LF   R       V++YN++ +G+C +    +A  + +EMV++G  P++ TY 
Sbjct: 393 SLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYT 452

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
           I++KG   A  +  A  FF EM  +  + D   Y T +     +G I +A  + + M+  
Sbjct: 453 ILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLE 512

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G+     TYN +I  LCK  ++ +A  +  +MV  G  P+  TY  +I   C  G +  A
Sbjct: 513 GISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREA 572

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
            +F   M  D   P+  TY + I  +C  G +      F KM      PN  TYN+LI +
Sbjct: 573 RKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHA 632

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
           +    ++    +A +   EM++RG +P K+T+  +++G    GN
Sbjct: 633 LCRTGRTQ---LAYRHFHEMLERGLVPNKYTYTLLIDGNCKEGN 673



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 171/354 (48%), Gaps = 8/354 (2%)

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG--CR 170
           AAR  D   V      M  L + P+  T+  + + ++  G+ D+   +   M   G  C 
Sbjct: 215 AARWDDICAVHA---EMLQLGIEPSIVTYNTLLDSFLKEGRNDKVAMLLKEMETRGSGCL 271

Query: 171 QSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVL 230
            +  + N ++  L ++  +E+A  + +  R   KA   +YN +  G        KA ++ 
Sbjct: 272 PNDVTHNVVITGLARKGDLEEAAEMVEGMRLSKKASSFTYNPLITGLLAKGFVKKADDLQ 331

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
            EM + G+ P + TYN ++ G  ++GQ+E A   F+EM+    + DV+TY ++++G+   
Sbjct: 332 LEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKA 391

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           G +K A  +F  + + G+ P+V TYN +I   C+   +E A  + EEMV +G +P+  TY
Sbjct: 392 GSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTY 451

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
            ++++G  +   +  A EF   M     +P+   YN  IR     G I +   L E M  
Sbjct: 452 TILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMML 511

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
                +  TYNILI  +    K+ +L  A  L ++MV  G  P   T+  +++ 
Sbjct: 512 EGISSDTVTYNILIDGLC---KTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHA 562



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 144/323 (44%), Gaps = 3/323 (0%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII 144
           +AL  F  L  H   A +  +++  ID   RL D      L   M      P   T+ I+
Sbjct: 396 EALLLFGDLR-HAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTIL 454

Query: 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-F 203
            +   +A     A + F  M   G +    ++NT +        + KA+ L +V   +  
Sbjct: 455 MKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGI 514

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
            +D ++YN++ +G C     N A ++  +MV  GL P+  TY  ++  +   G + EA +
Sbjct: 515 SSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARK 574

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
           FF +M         VTYT  +H +   G +  A   F  M+  GV P+  TYN +I  LC
Sbjct: 575 FFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALC 634

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
           +    + A   F EM+ +G +PN  TY ++I G C  G  E A+ F   M  +   P+  
Sbjct: 635 RTGRTQLAYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQNGIHPDYL 694

Query: 384 TYNILIRYFCDAGEIERGLELFE 406
           T+  L + F D G +   +E  E
Sbjct: 695 THKALFKGF-DEGHMNHAIEYLE 716



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 133/299 (44%), Gaps = 52/299 (17%)

Query: 220 VKRTNKALEVLK-------------EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           VK  N+ L VL              EM+  G+ P++ TYN +L  + + G+ ++      
Sbjct: 202 VKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDSFLKEGRNDKVAMLLK 261

Query: 267 EMKKR--KCEIDVVTYTTIVHGFGVVGEIKRARNVFDG---------------------- 302
           EM+ R   C  + VT+  ++ G    G+++ A  + +G                      
Sbjct: 262 EMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMRLSKKASSFTYNPLITGLLAK 321

Query: 303 ------------MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
                       M N G++P+V TYNAMI  L +   VE A + F EM   G  P+  TY
Sbjct: 322 GFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITY 381

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           N ++ G C  G ++ AL   G ++     P V TYNILI  +C  G++E    L E+M  
Sbjct: 382 NSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVE 441

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
             CLP++ TY IL+        +  L +A +   EM+ +G  P  F +N  +   L +G
Sbjct: 442 QGCLPDVCTYTILMKG---SHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLG 497



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 133/296 (44%), Gaps = 1/296 (0%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           ++   L PT  T+ I+ + Y   G  + A ++   M E GC   + ++  ++        
Sbjct: 404 LRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACS 463

Query: 189 VEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           +  A   F     K  + D  +YN        +    KA  + + M+  G++ +  TYNI
Sbjct: 464 LAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNI 523

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ G  + G + +A    ++M     + D +TYT ++H     G ++ AR  F  M++ G
Sbjct: 524 LIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISDG 583

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           + PS  TY   I   C++ ++ +A   F +M+ +G  PN  TYNV+I  LC TG  + A 
Sbjct: 584 LAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQLAY 643

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
                M +    PN  TY +LI   C  G  E  +  + +M      P+  T+  L
Sbjct: 644 RHFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQNGIHPDYLTHKAL 699



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 122/280 (43%), Gaps = 51/280 (18%)

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
           L    EM   G+ P++   N VL+    A + ++      EM +   E  +VTY T++  
Sbjct: 187 LSAFHEMASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDS 246

Query: 287 FGVVGEIKRARNVFDGMV-------NGGVLPSVATYNAMIQVLCKKDSVENAILVFE--- 336
           F     +K  RN    M+         G LP+  T+N +I  L +K  +E A  + E   
Sbjct: 247 F-----LKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMR 301

Query: 337 -------------------------------EMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
                                          EM  +G MP   TYN +I GL  +G++E 
Sbjct: 302 LSKKASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEA 361

Query: 366 A-LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
           A ++FV  M+    +P+V TYN L+  +C AG ++  L LF  +      P + TYNILI
Sbjct: 362 AQVKFV-EMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILI 420

Query: 425 SSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
                  +  DL  A +L  EMV++G +P   T+  ++ G
Sbjct: 421 DGYC---RLGDLEEARRLKEEMVEQGCLPDVCTYTILMKG 457



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 83/178 (46%), Gaps = 12/178 (6%)

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
           + F  M + GV P V   N +++VL      ++   V  EM+  G  P+  TYN ++   
Sbjct: 188 SAFHEMASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDSF 247

Query: 358 CHTGEMERALEFVGRM--KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
              G  ++    +  M  +   C PN  T+N++I      G++E   E+ E M       
Sbjct: 248 LKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMRLSKKAS 307

Query: 416 NLDTYNILISSMFVR---KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
           +  TYN LI+ +  +   KK+DD      L +EM + G MP   T+N +++GLL  G 
Sbjct: 308 SF-TYNPLITGLLAKGFVKKADD------LQLEMENEGIMPTVVTYNAMIHGLLQSGQ 358


>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
 gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
          Length = 564

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 106/373 (28%), Positives = 181/373 (48%), Gaps = 7/373 (1%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKT---FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS 175
           + TV +L+H +   +  P+  T   +  I   ++ +   D+A+  F  M + G     N 
Sbjct: 72  FFTVPSLLHHLTQ-NQNPSMTTALLYESIINAHLKSQLLDKALIFFNEMVDKGLVFRPNI 130

Query: 176 FNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235
           FN++L  L +    EKA+  F   + + K DV S+ ++  G C     +K+ ++L  + D
Sbjct: 131 FNSLLGSLVRSNCFEKAWLFFNELKERVKFDVYSFGIMIKGCCENGNLDKSFQLLGLLQD 190

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
            GL+PN+  Y  ++ G  + G IE A  FF +M +     +  T+T +++G    G  K 
Sbjct: 191 MGLSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKD 250

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
             ++F+ M   G+ P++ TYN ++   C +  +  A  +F+EM  +G   N  TYN +I 
Sbjct: 251 GFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIG 310

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
           G+C    +  A + V +MK     PN+ TYN LI  FCD G +++   L +++ S    P
Sbjct: 311 GMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSP 370

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
           +L TYNILI       K+ +      L  EM  RG  P K T   +++  + +     A 
Sbjct: 371 SLVTYNILIEGY---SKAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAF 427

Query: 476 EILRLQSRCGRLP 488
           +I     + G +P
Sbjct: 428 QIYSSMEKFGLVP 440



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 181/383 (47%), Gaps = 8/383 (2%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII 144
           KA  FFN L     +     SF   I       +    + L+  ++ + L P    +  +
Sbjct: 146 KAWLFFNELKERVKF--DVYSFGIMIKGCCENGNLDKSFQLLGLLQDMGLSPNVVIYTTL 203

Query: 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR--GK 202
            +     G  +RA   F  M E G   +  +F  +++ L K+   +  ++LF+  +  G 
Sbjct: 204 IDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGL 263

Query: 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262
           F  ++ +YN + N +C   +  +A ++  EM +RG+  N+ TYN ++ G  R  ++ EA 
Sbjct: 264 F-PNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMCREERVWEAE 322

Query: 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322
           +   +MKK     +++TY T++ GF  VG + +A ++ D + + G+ PS+ TYN +I+  
Sbjct: 323 KLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGY 382

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
            K  + +    +  EM G+G  P+  T  V+I       EME+A +    M+     P+V
Sbjct: 383 SKAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDV 442

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
             Y +LI   C  G ++   +LF  MG     P+   YN +I       K D+   A +L
Sbjct: 443 YVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYC---KEDNSYRALRL 499

Query: 443 LIEMVDRGFMPRKFTFNRVLNGL 465
           L EM  +G +P   +++ ++  L
Sbjct: 500 LREMEAKGLVPNVASYSSIIGVL 522



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 162/353 (45%), Gaps = 4/353 (1%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID   +  D         +M  + L   Q TF ++       G       +F  M  +G 
Sbjct: 204 IDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGL 263

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALE 228
             +L ++N +++  C E K+ +A++LF   R +  +A+V++YN +  G C  +R  +A +
Sbjct: 264 FPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMCREERVWEAEK 323

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           ++ +M    ++PNL TYN ++ G+   G +++A     ++K       +VTY  ++ G+ 
Sbjct: 324 LVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYS 383

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G  K   ++   M   G+ PS  T   +I    +   +E A  ++  M   G +P+  
Sbjct: 384 KAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVY 443

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            Y V+I GLC  G M+ + +    M +   EP+   YN +I  +C      R L L  +M
Sbjct: 444 VYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLLREM 503

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
            +   +PN+ +Y+ +I  +    K ++   A  LL +M++    P     N +
Sbjct: 504 EAKGLVPNVASYSSIIGVLCKDGKWEE---AEVLLDKMIELQLKPSASILNMI 553



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 91/165 (55%), Gaps = 7/165 (4%)

Query: 102 SPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           SPS  +++  I+  ++  +++ V  L   M+   + P++ T  ++ + YV   + ++A +
Sbjct: 369 SPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQ 428

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFK---ADVISYNVIANG 216
           I+ SM + G    +  +  ++  LC +  ++++  LF+   G+     +DVI YN + +G
Sbjct: 429 IYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSM-GEMHVEPSDVI-YNTMIHG 486

Query: 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
           +C    + +AL +L+EM  +GL PN+ +Y+ ++    + G+ EEA
Sbjct: 487 YCKEDNSYRALRLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEA 531



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 1/143 (0%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID   RL++    + +   M+   L P    + ++       G    + K+F SM E   
Sbjct: 414 IDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHV 473

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALE 228
             S   +NT++   CKE    +A  L +    K    +V SY+ I    C   +  +A  
Sbjct: 474 EPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAEV 533

Query: 229 VLKEMVDRGLNPNLTTYNIVLKG 251
           +L +M++  L P+ +  N++ K 
Sbjct: 534 LLDKMIELQLKPSASILNMISKA 556


>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
 gi|219887141|gb|ACL53945.1| unknown [Zea mays]
          Length = 522

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 182/344 (52%), Gaps = 9/344 (2%)

Query: 100 AHS--PSSFDHAI--DLAARLRDYRTVWTLVHRM--KSLSLGPTQKTFAIIAERYVSAGK 153
           +HS  P  F ++I  D   R  + RT+ +L      K + LG    T +I+       GK
Sbjct: 114 SHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAY--TCSILLNGLCKDGK 171

Query: 154 ADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNV 212
             +A ++   +   G   +   +NT+++  C+ + +  A+ +F+  + +  + D I+YN 
Sbjct: 172 VAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNA 231

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           + NG C ++   KA +++ EM   G++P++ T+N ++  Y  AGQ+E+ +    +M+++ 
Sbjct: 232 LINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKG 291

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
            + DV+++ ++V  F   G+I  A  + D M+   V P+   YN++I    +    E A 
Sbjct: 292 IKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAF 351

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
           L+ E+M   G   +  TYN++++GLC + +++ A E +  +++    P+V +YN +I   
Sbjct: 352 LLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISAC 411

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
           C+ G+ ++ LEL ++M      P L TY+ L+S++    +  D+
Sbjct: 412 CNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDM 455



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 179/359 (49%), Gaps = 9/359 (2%)

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
           A R+ + R    L+  M S S+ P   T++I+ +     G++   + +F    + G    
Sbjct: 99  AGRMDETRV---LMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLG 155

Query: 173 LNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVL 230
             + + +L+ LCK+ KV KA  + +  V  G     VI YN + NG+C V+    A  + 
Sbjct: 156 AYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVI-YNTLINGYCQVRDLRGAFCIF 214

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
           ++M  R + P+  TYN ++ G  +   + +A    +EM+K   +  V T+ T++  +G  
Sbjct: 215 EQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTA 274

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           G++++   V   M   G+   V ++ ++++  CK   +  A+ + ++M+ K   PN+  Y
Sbjct: 275 GQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVY 334

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           N +I     +G+ E+A   V +MK+     ++ TYN+L++  C + +I+   EL   + +
Sbjct: 335 NSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRN 394

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
               P++ +YN +IS+   +  +D  L   +LL EM   G  P   T++ +++ L   G
Sbjct: 395 QGLRPDVVSYNTIISACCNKGDTDKAL---ELLQEMNKYGIRPTLRTYHTLVSALASAG 450



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 170/350 (48%), Gaps = 8/350 (2%)

Query: 125 LVHRMKSLSLGPTQKTFA---IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
           +V RM      P    F+   +IA  + S GK   A+K+F  M + G   +  ++NT++D
Sbjct: 1   MVRRMGRSEGAPPPDAFSYNVVIAGLWRS-GKGSDALKVFDEMVDMGVVPNWITYNTMID 59

Query: 182 LLCKEKKVEKAYNL-FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
              K   +E  + L  ++     K ++++YNV+ +G C   R ++   ++ EM    + P
Sbjct: 60  GHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFP 119

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           +  TY+I+  G  R G+       F E  K+   +   T + +++G    G++ +A  V 
Sbjct: 120 DGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVL 179

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           + +V+ G++P+   YN +I   C+   +  A  +FE+M  +   P+  TYN +I GLC  
Sbjct: 180 EMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKL 239

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
             + +A + V  M+    +P+V+T+N LI  +  AG++E+   +   M       ++ ++
Sbjct: 240 EMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISF 299

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
             ++ +     K+  +  A  +L +M+ +   P    +N +++  +  G+
Sbjct: 300 GSVVKAFC---KNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGD 346



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 116/249 (46%), Gaps = 3/249 (1%)

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           P+  +YN+V+ G +R+G+  +A + F EM       + +TY T++ G    G+++    +
Sbjct: 14  PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRL 73

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
            D M++ G  P++ TYN ++  LC+   ++   ++ +EM      P+  TY+++  GL  
Sbjct: 74  RDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTR 133

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419
           TGE    L                T +IL+   C  G++ +  ++ E +     +P    
Sbjct: 134 TGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVI 193

Query: 420 YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           YN LI+     +   DL  A  +  +M  R   P   T+N ++NGL  +     A++++ 
Sbjct: 194 YNTLINGYCQVR---DLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVM 250

Query: 480 LQSRCGRLP 488
              + G  P
Sbjct: 251 EMEKSGVDP 259



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 73/179 (40%), Gaps = 36/179 (20%)

Query: 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
           + P  + +  I + Y+ +G  ++A  +   M   G   S+ ++N +L  LC+  ++++A 
Sbjct: 327 VAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAE 386

Query: 194 NLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN------ 246
            L    R +  + DV+SYN I +  C    T+KALE+L+EM   G+ P L TY+      
Sbjct: 387 ELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSAL 446

Query: 247 -----------------------------IVLKGYFRAGQIEEAWRFFLEMKKRKCEID 276
                                        I++  Y R     +      EM ++    D
Sbjct: 447 ASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIAFD 505


>gi|449515696|ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 657

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 120/432 (27%), Positives = 187/432 (43%), Gaps = 73/432 (16%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS---LN 174
           + R+   LV+ +    L P + T++++ +     G  ++A + +  M   G R S   LN
Sbjct: 160 NLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLN 219

Query: 175 S-------------------------------FNTILDLLCKEKKVEKAYNLF-KVFRGK 202
           S                               FNT+L  LCKE K+ +A NL+ +V    
Sbjct: 220 SILEGYLKCQSWQNAFTMFNDALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKG 279

Query: 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262
              +V+SYN I  G C     N A +V KEM+D G  PN  T+ I++ GYF+ G IE A+
Sbjct: 280 ISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAF 339

Query: 263 RFFLEMK---------------KRKCEID--------------------VVTYTTIVHGF 287
             F  MK               K  C+                       + Y TI+ GF
Sbjct: 340 SIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGF 399

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
              G I  A NV+  M   G+ PS  TY ++I   CK ++++ A+ +  +M  KG   + 
Sbjct: 400 IKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDI 459

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
             Y  +I G C   +M+ A E +  ++     PN   YN +I  F +   +E  ++L++K
Sbjct: 460 KAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKK 519

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467
           M +     +L TY  LI  +    KS  LL A  +  EM+ +G +P       ++NGL  
Sbjct: 520 MVNEGIPCDLKTYTSLIDGLL---KSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCN 576

Query: 468 IGNQGLAKEILR 479
            G    A++IL 
Sbjct: 577 KGQFENARKILE 588



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 97/366 (26%), Positives = 175/366 (47%), Gaps = 6/366 (1%)

Query: 102 SPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           SP+  S+++ I    R  +      +   M      P   TF I+ + Y   G  + A  
Sbjct: 281 SPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFS 340

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWC 218
           IF  M +     +  +   I+  LCK  +  +  +LF  F  + F    + YN I +G+ 
Sbjct: 341 IFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFI 400

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
                N A  V +EM + G+ P+  TY  ++ G+ +   I+ A +   +MK++  ++D+ 
Sbjct: 401 KEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIK 460

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
            Y T++ GF    ++K A  + + +   G+ P+   YN+MI      ++VE AI ++++M
Sbjct: 461 AYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKM 520

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
           V +G   +  TY  +I GL  +G +  A +    M      P+ + + +LI   C+ G+ 
Sbjct: 521 VNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQF 580

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           E   ++ E M     +P++  YN LI+  F   K  +L  A +L  EM+DRG +P   T+
Sbjct: 581 ENARKILEDMNGKNMIPSVLIYNTLIAGHF---KEGNLQEAFRLHDEMLDRGLVPDNITY 637

Query: 459 NRVLNG 464
           + ++NG
Sbjct: 638 DILVNG 643



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 150/312 (48%), Gaps = 1/312 (0%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177
           D    +++ HRMK  ++ PT  T  II +    AG++     +F      G   +   +N
Sbjct: 334 DIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYN 393

Query: 178 TILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
           TI+D   KE  +  A N+++ +         ++Y  + +G+C     + AL++L +M  +
Sbjct: 394 TIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRK 453

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           GL  ++  Y  ++ G+ +   ++ A     E++      +   Y +++ GF  +  ++ A
Sbjct: 454 GLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEA 513

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
            +++  MVN G+   + TY ++I  L K   +  A  +  EM+ KG +P+   + V+I G
Sbjct: 514 IDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLING 573

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
           LC+ G+ E A + +  M      P+V  YN LI      G ++    L ++M     +P+
Sbjct: 574 LCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLDRGLVPD 633

Query: 417 LDTYNILISSMF 428
             TY+IL++  F
Sbjct: 634 NITYDILVNGKF 645



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 167/388 (43%), Gaps = 47/388 (12%)

Query: 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
           A RL+D      +V+  KS++L         + + Y   G    A+ +   + E G   +
Sbjct: 129 ALRLKD-----DMVNCGKSMNLAVATS----LMKGYCMQGNLRSALVLVNEISESGLVPN 179

Query: 173 LNSFNTILDLLCKEKKVEKA----------------YNLFKVFRGKFK------------ 204
             +++ ++D  CK   +EKA                Y+L  +  G  K            
Sbjct: 180 KVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFN 239

Query: 205 -------ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
                  A+V ++N + +  C   + N+A  +  E++ +G++PN+ +YN ++ G+ R   
Sbjct: 240 DALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDN 299

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           I  A + + EM       + VT+T ++ G+   G+I+ A ++F  M +  +LP+  T   
Sbjct: 300 INAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGI 359

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
           +I+ LCK         +F + V +G++P    YN +I G    G +  A      M +  
Sbjct: 360 IIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVG 419

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
             P+  TY  LI  FC    I+  L+L   M       ++  Y  LI     R+   D+ 
Sbjct: 420 ITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRR---DMK 476

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            A +LL E+   G  P +F +N ++ G 
Sbjct: 477 SAHELLNELRGAGLSPNRFIYNSMITGF 504



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 133/291 (45%), Gaps = 10/291 (3%)

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           D  +Y++  +  CL   +  AL +L+EM   G  P   T+  V+    + G + EA R  
Sbjct: 74  DQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACVKEGNVAEALRLK 133

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
            +M      +++   T+++ G+ + G ++ A  + + +   G++P+  TY+ +I   CK 
Sbjct: 134 DDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKN 193

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP---NV 382
            ++E A   + EM  KG   +  + N ++ G       + A      M +D  E    NV
Sbjct: 194 GNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAF----TMFNDALESGLANV 249

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
            T+N L+ + C  G++     L++++ +    PN+ +YN +I       + D++  A K+
Sbjct: 250 FTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNII---LGHCRKDNINAACKV 306

Query: 443 LIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQFKL 493
             EM+D GF P   TF  +++G    G+   A  I         LP    L
Sbjct: 307 YKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTL 357



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/236 (19%), Positives = 96/236 (40%), Gaps = 36/236 (15%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
            M  + + P+  T+  + + +      D A+K+   M   G +  + ++ T++D  CK +
Sbjct: 414 EMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRR 473

Query: 188 KVEKAYNLFKVFRGK---------------FK---------------------ADVISYN 211
            ++ A+ L    RG                FK                      D+ +Y 
Sbjct: 474 DMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYT 533

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
            + +G     R   A ++  EM+ +G+ P+   + +++ G    GQ E A +   +M  +
Sbjct: 534 SLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGK 593

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
                V+ Y T++ G    G ++ A  + D M++ G++P   TY+ ++    K D 
Sbjct: 594 NMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILVNGKFKGDG 649


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 169/350 (48%), Gaps = 4/350 (1%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           T+  +   +  AG A    ++   M E GC  SL ++N ++  LC+  +V++A+ L K+ 
Sbjct: 238 TYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLM 297

Query: 200 RGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
             K   ADV +Y+++ +G+   KR  +A  +L+EM  +GL P    Y  ++ G+ R G  
Sbjct: 298 DKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDS 357

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
            EA+R   EM  R  ++++ TY  +V G    G++++A  + + M+  G+ P   TYN M
Sbjct: 358 GEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNM 417

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           I+   K+ +      +  EM     +P + T  ++I GLC  G +E A      M     
Sbjct: 418 IEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGV 477

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
           +PN   Y  LI+     G  +  + + + M      P++  YN +I  +   +K ++   
Sbjct: 478 KPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEE--- 534

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           A   L+EM++RG  P  +T+  +++G    G   +A    +    CG  P
Sbjct: 535 AKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAP 584



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 101/352 (28%), Positives = 168/352 (47%), Gaps = 5/352 (1%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M SL + P    +  + + +V  G+   AV+I   M + G +  +  +N+++  LCK +K
Sbjct: 472 MVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRK 531

Query: 189 VEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           +E+A + L ++     K +V +Y  + +G+C       A    KEM+  G+ PN      
Sbjct: 532 MEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTA 591

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++ GY + G   EA   F  M  R    DV TY+ ++HG    G+++ A  +    +  G
Sbjct: 592 LIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKG 651

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           ++P V TYN++I   CK+  +  A  + E M  KG  PN  TYN +I GLC  GE+ERA 
Sbjct: 652 LVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERAR 711

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           E    +       N  TY  +I  +C +G + +   LF++M      P+   Y+ LI   
Sbjct: 712 ELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGC 771

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
              +K  +   A  L +E V +GF     + N +++G    G    A ++L 
Sbjct: 772 ---RKEGNTEKALSLFLESVQKGFASTS-SLNALMDGFCKSGKVIEANQLLE 819



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 182/388 (46%), Gaps = 4/388 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  +    +  D      L++ M  + + P  +T+  + E Y+      R   +   M
Sbjct: 378 TYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEM 437

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRT 223
            +     +  +   I++ LC+   +E A  +F++      K + + Y  +  G     R 
Sbjct: 438 KKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRF 497

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A+ +LK M  +G+ P++  YN V+ G  ++ ++EEA  + +EM +R  + +V TY  +
Sbjct: 498 QEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGAL 557

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +HG+   GE++ A   F  M+  G+ P+     A+I   CK+ S   A  +F  M+G+  
Sbjct: 558 IHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSV 617

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+  TY+ +I GL   G+++ A+E +    +    P+V TYN +I  FC  G I +  +
Sbjct: 618 HPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQ 677

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           L E M      PN+ TYN LI+ +    K+ ++  A +L   +  +G      T+  +++
Sbjct: 678 LHEYMCQKGISPNIITYNALINGLC---KAGEIERARELFDGIPGKGLAHNAVTYATIID 734

Query: 464 GLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           G    GN   A  +    +  G  P  F
Sbjct: 735 GYCKSGNLSKAFRLFDEMTLKGVPPDSF 762



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 170/341 (49%), Gaps = 11/341 (3%)

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSF--NTILDLLCKEKKVE 190
            L P   T+  +   Y  +G+   A + F  M   GC  + N      ++D  CKE    
Sbjct: 546 GLKPNVYTYGALIHGYCKSGEMQVADRYFKEML--GCGIAPNDVVCTALIDGYCKEGSTT 603

Query: 191 KAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL 249
           +A ++F+   G+    DV +Y+ + +G     +   A+E+L E +++GL P++ TYN ++
Sbjct: 604 EATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSII 663

Query: 250 KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
            G+ + G I +A++    M ++    +++TY  +++G    GEI+RAR +FDG+   G+ 
Sbjct: 664 SGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLA 723

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE- 368
            +  TY  +I   CK  ++  A  +F+EM  KG  P+S  Y+ +I G    G  E+AL  
Sbjct: 724 HNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSL 783

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
           F+  ++  +   +  + N L+  FC +G++    +L E M      P+  TY ILI    
Sbjct: 784 FLESVQ--KGFASTSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILID--- 838

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
              K+  L  A +  ++M  R  MP   T+  +L+G  + G
Sbjct: 839 YHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAG 879



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 122/514 (23%), Positives = 213/514 (41%), Gaps = 41/514 (7%)

Query: 10  KNHLHFFCIYRGLSPLTTTSPAP-LPPAAADPAALASLILTSTDPRTLTQTLHCPSLHWT 68
           K +L+F  I   L   T    A        + + + + I T  + +     L   S   +
Sbjct: 7   KRNLNFLKIKATLKARTQNRKANNFCSKTQNNSNIVNEITTFLNQKNWESLLPLVSNKLS 66

Query: 69  PQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHR 128
           P +V  +I +  N   + L FFN + +   ++    SF     +    R +    ++V++
Sbjct: 67  PDVVHSVITKQVNDPKRLLDFFNWVQFQMGFSQKLQSFSILALILCNSRLFSRADSVVNQ 126

Query: 129 MKSLSLGPTQK------------------------------TFAIIAERYVSAGKADRAV 158
           M  +S G   +                               F ++ + Y   G  D AV
Sbjct: 127 MIMMSSGGYSEILDSLIKSCKEFDLNNVNGNENSNNNDRGVVFELLIDGYKKKGLFDEAV 186

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA----DVISYNVIA 214
             FL    +G    L   N +L  L K  K+E     ++ + G  +A    DV +Y  + 
Sbjct: 187 SFFLGAKRNGFVVGLLCCNGLLSDLLKANKLEL---FWRFYNGMLEANVLHDVYTYTHLI 243

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
           N         +   +L EM ++G +P+L TYN+V+ G  RAG+++EA+     M K+   
Sbjct: 244 NAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLV 303

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
            DV TY+ ++ GFG       A+ + + M + G+ P    Y A+I    ++     A  V
Sbjct: 304 ADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRV 363

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
            EEM+ +G   N  TYN +++G+C  G+ME+A   +  M     +P+ QTYN +I  +  
Sbjct: 364 KEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLK 423

Query: 395 AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
                R  +L  +M     +P   T  ++I+ +      +D   A ++   MV  G  P 
Sbjct: 424 EQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIED---ASRVFEIMVSLGVKPN 480

Query: 455 KFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
              +  ++ G +  G    A  IL++  + G  P
Sbjct: 481 AVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQP 514



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 182/403 (45%), Gaps = 15/403 (3%)

Query: 78  RLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPT 137
           R +N  L+A    N+L       H   ++ H I+   R  + +    L+  M+     P+
Sbjct: 222 RFYNGMLEA----NVL-------HDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPS 270

Query: 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK-VEKAYNLF 196
             T+ ++      AG+ D A ++   M + G    + +++ ++D   K+K+  E    L 
Sbjct: 271 LVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLE 330

Query: 197 KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256
           ++F    K   ++Y  + +G+     + +A  V +EM+ RG+  NL TYN ++KG  + G
Sbjct: 331 EMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFG 390

Query: 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
            +E+A     EM     + D  TY  ++ G+       R +++   M    ++P+  T  
Sbjct: 391 DMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCG 450

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
            +I  LC+  S+E+A  VFE MV  G  PN+  Y  +I+G    G  + A+  +  M   
Sbjct: 451 MIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKK 510

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
             +P+V  YN +I   C + ++E   +   +M      PN+ TY  LI       KS ++
Sbjct: 511 GVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYC---KSGEM 567

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
            VA +   EM+  G  P       +++G    G+   A  I R
Sbjct: 568 QVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFR 610



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 153/307 (49%), Gaps = 3/307 (0%)

Query: 140  TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
            T+A I + Y  +G   +A ++F  M   G       ++ ++D   KE   EKA +LF   
Sbjct: 728  TYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLES 787

Query: 200  RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
              K  A   S N + +G+C   +  +A ++L++MVD+ + P+  TY I++  + + G ++
Sbjct: 788  VQKGFASTSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLK 847

Query: 260  EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319
            EA +FF++M+KR    + +TYT ++ G+ + G       +FD M+   + P   T++ MI
Sbjct: 848  EAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMI 907

Query: 320  QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
                K+      + + ++M+ KG   +    +V+I  LC    +   L+ + ++++    
Sbjct: 908  DAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLN 967

Query: 380  PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA 439
             ++ T + L+R F  AG+++    + + M     +P+    N LI+   V + S D   A
Sbjct: 968  LSLATCSTLVRCFHKAGKMDGAARVLKSMVRFKWVPDSTELNDLIN---VEQDSTDSENA 1024

Query: 440  GKLLIEM 446
            G  L +M
Sbjct: 1025 GDFLKQM 1031


>gi|356529509|ref|XP_003533333.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12300, mitochondrial-like [Glycine max]
          Length = 450

 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 113/432 (26%), Positives = 202/432 (46%), Gaps = 34/432 (7%)

Query: 41  AALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRL-WNHALKALHFFNILSYHPTY 99
           + L++LILT   P         PS+      V Q    L   H    + F  IL      
Sbjct: 33  SILSNLILTKVKP---------PSIQNVDDAVSQFNSMLCMRHTPPVIQFNKILDSFAXM 83

Query: 100 AH--SPSSFDHAIDLAARLRDYRTVWTLVH---RMKSLSLG-------------PTQKTF 141
            H  +  S  H ++L     D+ T+  L++    M  ++ G             P   TF
Sbjct: 84  KHYSTAVSLSHRLELKGIQPDFFTLNILMNCFCHMGQINFGFSVLAKILKRGYQPHTITF 143

Query: 142 AIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG 201
             + +     G+ ++A+     +   G +    S+ T+++ +CK      A  L +   G
Sbjct: 144 TTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDG 203

Query: 202 KF-KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
           +  K +V  YN I +  C  +  ++A  +  EM  +G++ N+ +YNI++KG+ ++  ++E
Sbjct: 204 RLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISANVVSYNIMIKGFCKSKMVDE 263

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
           A   F EM ++     +VTY +++ G    G I     + D M + G+   V TYN++I 
Sbjct: 264 ALNLFKEMHQKNMVPTIVTYGSLMDGLCKSGRISYVWELIDEMHDRGIPADVITYNSLID 323

Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
            LCK   ++ AI +F +M  K    +  T+ +++ GLC  G ++ A E    +   E + 
Sbjct: 324 GLCKNGHLDRAIALFNKM--KDXRFDRLTFTILLDGLCKGGRLKDAQEVFQDLLTKEYDL 381

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAG 440
           +V  YN++I  +C  G +E  L +  KM    C+P+  T+ I+I+++F + ++D    A 
Sbjct: 382 DVYPYNVMINGYCKQGLLEEALTMRSKMEDNGCIPSAVTFEIIINALFEKDENDK---AE 438

Query: 441 KLLIEMVDRGFM 452
           KLL EM+ RG +
Sbjct: 439 KLLHEMIARGLL 450



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 183/382 (47%), Gaps = 8/382 (2%)

Query: 101 HSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           H+P    F+  +D  A ++ Y T  +L HR++   + P   T  I+   +   G+ +   
Sbjct: 66  HTPPVIQFNKILDSFAXMKHYSTAVSLSHRLELKGIQPDFFTLNILMNCFCHMGQINFGF 125

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGW 217
            +   + + G +    +F T++  LC + +V KA +   K+     K D +SY  + NG 
Sbjct: 126 SVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLINGV 185

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           C +  T  A+++++++  R   PN+  YN ++    +   + EA+  F EM  +    +V
Sbjct: 186 CKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISANV 245

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           V+Y  ++ GF     +  A N+F  M    ++P++ TY +++  LCK   +     + +E
Sbjct: 246 VSYNIMIKGFCKSKMVDEALNLFKEMHQKNMVPTIVTYGSLMDGLCKSGRISYVWELIDE 305

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M  +G   +  TYN +I GLC  G ++RA+    +MKD   +    T+ IL+   C  G 
Sbjct: 306 MHDRGIPADVITYNSLIDGLCKNGHLDRAIALFNKMKDXRFDR--LTFTILLDGLCKGGR 363

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           ++   E+F+ + +     ++  YN++I+    +   ++ L    +  +M D G +P   T
Sbjct: 364 LKDAQEVFQDLLTKEYDLDVYPYNVMINGYCKQGLLEEALT---MRSKMEDNGCIPSAVT 420

Query: 458 FNRVLNGLLLIGNQGLAKEILR 479
           F  ++N L        A+++L 
Sbjct: 421 FEIIINALFEKDENDKAEKLLH 442


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 175/335 (52%), Gaps = 4/335 (1%)

Query: 130  KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV 189
            K+L + PT +++  + +  + +   ++A+++F  M   G   +  ++N +LD   K K++
Sbjct: 788  KNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRI 847

Query: 190  EKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
             K Y+L+   R +  + + I++N+I +        NKAL++  E++    +P   TY  +
Sbjct: 848  NKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPL 907

Query: 249  LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
            + G  +AG+ E+A + F EM    C  + V Y  +++GFG  GEI  A  +F  MV  G+
Sbjct: 908  IDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGI 967

Query: 309  LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
             P + +Y  +++ LC    ++ A+  FEE+   G  P++ +YN +I GL  +  ++ AL 
Sbjct: 968  RPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALS 1027

Query: 369  FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
                MK+    P++ TYN LI +   AG+++  ++++E++      P++ TYN LI    
Sbjct: 1028 LFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHS 1087

Query: 429  VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
            +    D    A  +  +M+  G  P   TF ++ N
Sbjct: 1088 LSGNKDQ---AFSVFKKMMVVGCSPNTETFAQLPN 1119



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 98/388 (25%), Positives = 175/388 (45%), Gaps = 39/388 (10%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            R  D R +  L+  MKS+ L P   T+ I       A + D A  IF  M + GC   +
Sbjct: 246 GRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDV 305

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGK------------------------------- 202
            ++  ++D LC   K++KA  L+   R                                 
Sbjct: 306 ITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNE 365

Query: 203 -----FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
                +  DV++Y ++    C     ++A ++L  M  +G+ PNL TYN ++ G  +A +
Sbjct: 366 MEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARR 425

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           ++EA      M+    +    +Y   +  +G  G+  +A + F+ M   G++PS+A  NA
Sbjct: 426 LDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNA 485

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
            +  L +   +  A  +F ++   G  P+S TYN++++     G++++A + +  M    
Sbjct: 486 SLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKG 545

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
           CEP+V   N LI     AG ++   ++F ++ +    P + TYNIL++ +    K   +L
Sbjct: 546 CEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGL---GKEGKIL 602

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            A +L   M + G  P   TFN +L+ L
Sbjct: 603 KALELFGSMTESGCPPNTITFNSLLDCL 630



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 104/403 (25%), Positives = 186/403 (46%), Gaps = 42/403 (10%)

Query: 127  HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSF---------- 176
            H+MK   L P   T   +    V  G+ + A+K+ +      C Q+ + F          
Sbjct: 679  HQMKKF-LSPDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNSQFWGELMECILT 737

Query: 177  ----------------NTI----------LDLLCKEKKVEKAYNLFKVFRGKF--KADVI 208
                            N++          + +LCK KK   A N+F  F         + 
Sbjct: 738  EAEIEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHPTLE 797

Query: 209  SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
            SYN + +G      T KALE+ ++M   G +PN  TYN++L  + ++ +I + +  + EM
Sbjct: 798  SYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEM 857

Query: 269  KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
            + R CE + +T+  I+        + +A +++  +++G   P+  TY  +I  L K    
Sbjct: 858  RSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRS 917

Query: 329  ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
            E A+ +FEEM+  G  PNS  YN++I G   +GE++ A E   +M  +   P++++Y IL
Sbjct: 918  EQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTIL 977

Query: 389  IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
            +   C  G I+  ++ FE++      P+  +YN +I+ +   ++ D+ L    L  EM +
Sbjct: 978  VECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEAL---SLFSEMKN 1034

Query: 449  RGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
            RG  P  +T+N ++  L + G   +A ++       G  P  F
Sbjct: 1035 RGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVF 1077



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 186/404 (46%), Gaps = 42/404 (10%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           W +  R+K+L L PT  T+ I+       GK  +A+++F SM E GC  +  +FN++LD 
Sbjct: 570 WKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDC 629

Query: 183 LCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           L K   V+ A  +F ++       DV++YN I  G     R + A     +M  + L+P+
Sbjct: 630 LSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQM-KKFLSPD 688

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC-------------------EI-DVVTYT 281
             T   ++ G  R G++E+A +  +E   + C                   EI + +++ 
Sbjct: 689 YVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNSQFWGELMECILTEAEIEEAISFA 748

Query: 282 TIVHGFGVVGE-----------IKR-----ARNVFDGMV-NGGVLPSVATYNAMIQVLCK 324
            I+    V  +            KR     A+NVFD    N G+ P++ +YN ++  L  
Sbjct: 749 EILVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLG 808

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
            +  E A+ +FE+M   G  PN+ TYN+++     +  + +  +    M+   CEPN  T
Sbjct: 809 SNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAIT 868

Query: 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLI 444
           +NI+I     +  + + L+L+ ++ SG   P   TY  LI  +    +S+    A K+  
Sbjct: 869 HNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQ---AMKIFE 925

Query: 445 EMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           EM+D G  P    +N ++NG    G    A E+ +   + G  P
Sbjct: 926 EMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRP 969



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/412 (23%), Positives = 190/412 (46%), Gaps = 38/412 (9%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDL---AARLRD-------------YRTVWTLVHRM 129
           A  +F I+S    + H+  + ++ +++     R+ D             YR + T +   
Sbjct: 114 AFSYFKIVSQLTNFVHTTDACNYMLEILREQRRIEDMVFVFDLMQKKVIYRNLTTYMTIF 173

Query: 130 KSLSL------GP------TQKTFAIIAERY------VSAGKADRAVKIFLSMHEHGCRQ 171
           K+LS+       P      T+  F + A  Y      +  G  + A+K++  M   G + 
Sbjct: 174 KALSIKGGIGRAPFALRKMTEVGFILNAYSYNGLIHLLLPGFCNEALKVYKRMISEGMKP 233

Query: 172 SLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVL 230
           S+ +++ ++  L +     K  NL +  +    + ++ +Y +        +R + A  + 
Sbjct: 234 SMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRARRIDDAWGIF 293

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
           KEM D G  P++ TY +++     AG++++A   +++M+      D VTY T++  FG V
Sbjct: 294 KEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKV 353

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           G+++  +  ++ M   G  P V TY  +I+ LCK   V+ A  + + M  KG  PN  TY
Sbjct: 354 GDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTY 413

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           N +I GL     ++ ALE +  M+    +P   +Y + I Y+  +G+  + ++ FE M  
Sbjct: 414 NTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKK 473

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
              +P++   N   +S++   ++  +  A  +  ++   G  P   T+N ++
Sbjct: 474 RGIMPSIAACN---ASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLM 522



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 147/291 (50%), Gaps = 2/291 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M+SL + PT  ++ +  + Y  +G   +A+  F +M + G   S+ + N  L  L 
Sbjct: 432 LLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLA 491

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           +  ++ +A ++F  + +     D ++YN++   +    + +KA ++L EM+ +G  P++ 
Sbjct: 492 ETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVM 551

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
             N ++   ++AG+++ AW+ F  +K  K    VVTY  ++ G G  G+I +A  +F  M
Sbjct: 552 IINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSM 611

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G  P+  T+N+++  L K D+V+ A+ +F  M      P+  TYN +I GL   G +
Sbjct: 612 TESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRI 671

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
           + A  F  +MK     P+  T   LI      G +E  +++  +     CL
Sbjct: 672 DYAFWFFHQMK-KFLSPDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACL 721



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 165/337 (48%), Gaps = 8/337 (2%)

Query: 63   PSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRT- 121
            P+L     L+D ++    N   KAL  F  +    T+   P++F + + L A  +  R  
Sbjct: 794  PTLESYNCLMDGLLGS--NFTEKALELFEDMKSAGTH---PNNFTYNLLLDAHGKSKRIN 848

Query: 122  -VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180
             ++ L   M+S    P   T  II    V +   ++A+ ++  +       +  ++  ++
Sbjct: 849  KLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLI 908

Query: 181  DLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239
            D L K  + E+A  +F+ +       + + YN++ NG+      + A E+ K+MV  G+ 
Sbjct: 909  DGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIR 968

Query: 240  PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
            P+L +Y I+++     G+I+EA ++F E+K    + D V+Y  I++G G    +  A ++
Sbjct: 969  PDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSL 1028

Query: 300  FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
            F  M N G+ P + TYNA+I  L     V+ A+ ++EE+   G  P+  TYN +IRG   
Sbjct: 1029 FSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSL 1088

Query: 360  TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
            +G  ++A     +M    C PN +T+  L   +  AG
Sbjct: 1089 SGNKDQAFSVFKKMMVVGCSPNTETFAQLPNKYPRAG 1125



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 154/322 (47%), Gaps = 5/322 (1%)

Query: 171 QSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEV 229
            + ++ N +L++L +++++E    +F + + K    ++ +Y  I     +     +A   
Sbjct: 129 HTTDACNYMLEILREQRRIEDMVFVFDLMQKKVIYRNLTTYMTIFKALSIKGGIGRAPFA 188

Query: 230 LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289
           L++M + G   N  +YN ++      G   EA + +  M     +  + TY+ ++   G 
Sbjct: 189 LRKMTEVGFILNAYSYNGLIH-LLLPGFCNEALKVYKRMISEGMKPSMKTYSALMVALGR 247

Query: 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
            G+ ++  N+ + M + G+ P++ TY   I+ L +   +++A  +F+EM  +G  P+  T
Sbjct: 248 RGDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVIT 307

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
           Y V+I  LC  G++++A E   +M+     P+  TY  L+  F   G++E     + +M 
Sbjct: 308 YTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEME 367

Query: 410 SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
                P++ TY ILI ++    KS D+  A  +L  M  +G  P   T+N ++ GLL   
Sbjct: 368 VDGYAPDVVTYTILIEALC---KSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKAR 424

Query: 470 NQGLAKEILRLQSRCGRLPRQF 491
               A E+L      G  P  F
Sbjct: 425 RLDEALELLENMESLGVKPTAF 446



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 68/174 (39%), Gaps = 36/174 (20%)

Query: 125  LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
            L  +M    + P  K++ I+ E     G+ D AV+ F  +   G      S+N I++ L 
Sbjct: 958  LFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLG 1017

Query: 185  KEKKVEKAYNLFKVFRGK------------------------------------FKADVI 208
            K +++++A +LF   + +                                     +  V 
Sbjct: 1018 KSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVF 1077

Query: 209  SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262
            +YN +  G  L    ++A  V K+M+  G +PN  T+  +   Y RAG +   +
Sbjct: 1078 TYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQLPNKYPRAGLVHNPF 1131


>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 114/419 (27%), Positives = 190/419 (45%), Gaps = 18/419 (4%)

Query: 85  KALHFFNILSY----HPTYA------HSPSS--FDHAIDLAARLRDYRTVWTLVHRMKSL 132
           KAL  FN  +Y    H +++      H  SS     A  L  RL   R   +L+ ++   
Sbjct: 21  KALLLFNTATYQGLQHTSHSISFILNHLLSSGMLPQAQSLILRLISGRIPSSLMLQLTQA 80

Query: 133 SLGPTQK---TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV 189
              P       +  +   YV +   D+A+     M   G     N+FN +L LL +    
Sbjct: 81  HFTPCSTYTPLYDTVVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLLCLLIRSNYF 140

Query: 190 EKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL 249
           +KA+ +F   + K   D  S+ ++  G C      K   +L  + + GL+PN+  Y  ++
Sbjct: 141 DKAWWIFNELKSKVVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLI 200

Query: 250 KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
            G  + G +  A   F +M +     +  TY+ +++GF   G  +    +++ M   G++
Sbjct: 201 DGCCKDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIV 260

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           P+   YN +I   C    V+ A  VF EM  KG      TYN++I GLC   +   A++ 
Sbjct: 261 PNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKL 320

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
           V ++      PN+ TYNILI  FCD  +++  + LF ++ S    P L TYN LI+    
Sbjct: 321 VHKVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAG--- 377

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             K ++L  A  L+ EM +R   P K T+  +++    + +   A E+  L  + G +P
Sbjct: 378 YSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVP 436



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 174/367 (47%), Gaps = 6/367 (1%)

Query: 90  FNILSYHPTYAHSPSS--FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
           F +L+    +  SP+   +   ID   +  +      L  +M  L L P   T++++   
Sbjct: 178 FRLLAMLEEFGLSPNVVIYTTLIDGCCKDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNG 237

Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKAD 206
           +   G      +++ +M   G   +  ++N ++   C +  V+KA+ +F   R K     
Sbjct: 238 FFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACG 297

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           V++YN++  G C  K+  +A++++ ++   GL+PN+ TYNI++ G+    +++ A R F 
Sbjct: 298 VMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFN 357

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           ++K       +VTY T++ G+  V  +  A ++   M    + PS  TY  +I    + +
Sbjct: 358 QLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLN 417

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
             E A  +   M   G +P+  TY+V++ GLC  G M+ A +    + +   +PN   YN
Sbjct: 418 HTEKACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYN 477

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            +I  +C  G   R L L  +M     +PN+ ++   I  +   +K  +   A  LL +M
Sbjct: 478 TMIHGYCKEGSSYRALRLLNEMVQSGMVPNVASFCSTIGLLCRDEKWKE---AELLLGQM 534

Query: 447 VDRGFMP 453
           ++ G  P
Sbjct: 535 INSGLKP 541



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 149/306 (48%), Gaps = 3/306 (0%)

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
           R  + +   MK   + P    +  +   Y + G  D+A K+F  M E G    + ++N +
Sbjct: 245 REGFQMYENMKRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNIL 304

Query: 180 LDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           +  LC+ KK  +A  L  KV +     ++++YN++ NG+C V++ + A+ +  ++   GL
Sbjct: 305 IGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGL 364

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
           +P L TYN ++ GY +   +  A     EM++R      VTYT ++  F  +   ++A  
Sbjct: 365 SPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNHTEKACE 424

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
           +   M   G++P V TY+ ++  LC   +++ A  +F+ +      PNS  YN +I G C
Sbjct: 425 MHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYC 484

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC-DAGEIERGLELFEKMGSGVCLPNL 417
             G   RAL  +  M      PNV ++   I   C D    E  L L + + SG+  P++
Sbjct: 485 KEGSSYRALRLLNEMVQSGMVPNVASFCSTIGLLCRDEKWKEAELLLGQMINSGL-KPSV 543

Query: 418 DTYNIL 423
             Y ++
Sbjct: 544 SLYKMV 549



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 107/243 (44%), Gaps = 36/243 (14%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           R + +     LVH++  + L P   T+ I+   +    K D AV++F  +   G   +L 
Sbjct: 310 RGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPTLV 369

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEM 233
           ++NT++    K + +  A +L K    +  A   ++Y ++ + +  +  T KA E+   M
Sbjct: 370 TYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNHTEKACEMHSLM 429

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF------ 287
              GL P++ TY+++L G    G ++EA + F  + +   + + V Y T++HG+      
Sbjct: 430 EKSGLVPDVYTYSVLLHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSS 489

Query: 288 -------------GVVGEI----------------KRARNVFDGMVNGGVLPSVATYNAM 318
                        G+V  +                K A  +   M+N G+ PSV+ Y  +
Sbjct: 490 YRALRLLNEMVQSGMVPNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKPSVSLYKMV 549

Query: 319 IQV 321
            +V
Sbjct: 550 HKV 552



 Score = 45.1 bits (105), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 1/152 (0%)

Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           A S  ++   ID  ARL        +   M+   L P   T++++       G    A K
Sbjct: 400 APSKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEASK 459

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWC 218
           +F S+ E   + +   +NT++   CKE    +A  L  ++ +     +V S+       C
Sbjct: 460 LFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGMVPNVASFCSTIGLLC 519

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250
             ++  +A  +L +M++ GL P+++ Y +V K
Sbjct: 520 RDEKWKEAELLLGQMINSGLKPSVSLYKMVHK 551


>gi|15238810|ref|NP_197340.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635760|sp|Q94JX6.2|PP391_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g18390, mitochondrial; Flags: Precursor
 gi|332005166|gb|AED92549.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 459

 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 105/426 (24%), Positives = 186/426 (43%), Gaps = 40/426 (9%)

Query: 58  QTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLR 117
           ++L+   L  T + V ++++     +  +L FFN    +P+Y  +   ++      A  +
Sbjct: 66  RSLNSLRLPVTSEFVFRVLRATSRSSNDSLRFFNWARSNPSYTPTSMEYEELAKSLASHK 125

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH-GCRQSLNSF 176
            Y ++W ++ +MK LSL  + +T   I E+Y   G  D+AV++F  + +  GC+Q+++ +
Sbjct: 126 KYESMWKILKQMKDLSLDISGETLCFIIEQYGKNGHVDQAVELFNGVPKTLGCQQTVDVY 185

Query: 177 NTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235
           N++L  LC  K    AY L + + R   K D  +Y ++ NGWC   +  +A E L EM  
Sbjct: 186 NSLLHALCDVKMFHGAYALIRRMIRKGLKPDKRTYAILVNGWCSAGKMKEAQEFLDEMSR 245

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
           RG NP     +++++G   AG +E A     +M K     D+ T+  ++      GE++ 
Sbjct: 246 RGFNPPARGRDLLIEGLLNAGYLESAKEMVSKMTKGGFVPDIQTFNILIEAISKSGEVEF 305

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
              ++      G+   + TY  +I  + K   ++ A  +    V  G+ P  + Y  +I+
Sbjct: 306 CIEMYYTACKLGLCVDIDTYKTLIPAVSKIGKIDEAFRLLNNCVEDGHKPFPSLYAPIIK 365

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
           G+C  G  + A  F   MK     PN   Y +LI      G+                  
Sbjct: 366 GMCRNGMFDDAFSFFSDMKVKAHPPNRPVYTMLITMCGRGGK------------------ 407

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
                                + A   L+EM + G +P    F+ V +GL   G   LA 
Sbjct: 408 --------------------FVDAANYLVEMTEMGLVPISRCFDMVTDGLKNGGKHDLAM 447

Query: 476 EILRLQ 481
            I +L+
Sbjct: 448 RIEQLE 453



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 75/185 (40%), Gaps = 4/185 (2%)

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
           N    P+   Y  + + L      E+   + ++M       +  T   +I      G ++
Sbjct: 104 NPSYTPTSMEYEELAKSLASHKKYESMWKILKQMKDLSLDISGETLCFIIEQYGKNGHVD 163

Query: 365 RALE-FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           +A+E F G  K   C+  V  YN L+   CD         L  +M      P+  TY IL
Sbjct: 164 QAVELFNGVPKTLGCQQTVDVYNSLLHALCDVKMFHGAYALIRRMIRKGLKPDKRTYAIL 223

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           ++      K  +   A + L EM  RGF P     + ++ GLL  G    AKE++   ++
Sbjct: 224 VNGWCSAGKMKE---AQEFLDEMSRRGFNPPARGRDLLIEGLLNAGYLESAKEMVSKMTK 280

Query: 484 CGRLP 488
            G +P
Sbjct: 281 GGFVP 285


>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
 gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
          Length = 701

 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 188/387 (48%), Gaps = 41/387 (10%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            +L +   +W   +RMK     P   TF+ +      AG  + A K+F  M E G    +
Sbjct: 269 GKLDESMEMW---NRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDV 325

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
            ++N +L  L +  K+ K + L+ V       +++SYN++  G    K+  +A+   + +
Sbjct: 326 RTYNAMLSGLFRTGKLNKCFELWNVMSKNNCCNIVSYNMLIQGLLDNKKVEQAICYWQLL 385

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
            +RGL  + TTY +++ G  + G + +A R   E +    ++D   Y+++VHG    G +
Sbjct: 386 HERGLKADSTTYGLLINGLCKNGYLNKALRILEEAENEGADLDTFAYSSMVHGLCKKGML 445

Query: 294 KRA---------------RNVFDGMVNGGV--------------------LPSVATYNAM 318
           ++A                +VF+ ++NG V                     P+V +YN +
Sbjct: 446 EQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSKDCAPTVVSYNTI 505

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           I  LCK +   +A L  +EM+ +G  P+  TY+++I GLC   +++ AL    +  +   
Sbjct: 506 INGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMALNLWHQCINKRL 565

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
           +P++Q +NI+I   C A +++  LE+F +M    C+P+L T+N ++  ++   K+ D + 
Sbjct: 566 KPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIMEGLY---KAGDCVE 622

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           A K+   +++ G  P   ++N    GL
Sbjct: 623 ALKIWDRILEAGLQPDIISYNITFKGL 649



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/418 (26%), Positives = 194/418 (46%), Gaps = 14/418 (3%)

Query: 68  TPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRT---VWT 124
           +P LV +++K   N    AL  F+    HP YAH P  F H +    RL D +    V  
Sbjct: 9   SPTLVLKLLKAEKNPN-AALAIFDSACQHPGYAHPPFVFHHIL---RRLMDPKLVVHVGR 64

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE-HGCRQSLNSFNTILDLL 183
           +V  M++     ++       + Y      D+A+ +F +M +  GC   + SFN++L+  
Sbjct: 65  IVDLMRAQRCTCSEDVALSAIKAYAKCSMPDQALNLFQNMVDIFGCNPGIRSFNSMLNAF 124

Query: 184 CKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
            +  +  +A   F  F+      ++ +YN++    C  ++  K   +L  M + GLNP++
Sbjct: 125 IESNQWREAELFFTYFQTAGMSPNLQTYNILIKISCKKRQFEKGKGLLTWMFENGLNPDI 184

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            +Y  ++    ++G + +A   F EM  R    DV+ Y  ++ GF   G+  +A  ++  
Sbjct: 185 LSYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEIWKR 244

Query: 303 MV-NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
           ++    V PSV TYN MI  LCK   ++ ++ ++  M      P+  T++ +I GL   G
Sbjct: 245 LLTESSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAG 304

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
               A +    M +    P+V+TYN ++      G++ +  EL+  M    C  N+ +YN
Sbjct: 305 NFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNCC-NIVSYN 363

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           +LI  +   KK +  +   +LL E   RG      T+  ++NGL   G    A  IL 
Sbjct: 364 MLIQGLLDNKKVEQAICYWQLLHE---RGLKADSTTYGLLINGLCKNGYLNKALRILE 418



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 154/307 (50%), Gaps = 6/307 (1%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           W L+H      L     T+ ++       G  ++A++I       G      ++++++  
Sbjct: 382 WQLLHER---GLKADSTTYGLLINGLCKNGYLNKALRILEEAENEGADLDTFAYSSMVHG 438

Query: 183 LCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           LCK+  +E+A  L  ++ + + K +   +N + NG+    +  +A+ VL+EM  +   P 
Sbjct: 439 LCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSKDCAPT 498

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           + +YN ++ G  +A +  +A+    EM +   + D++TY+ ++ G     ++  A N++ 
Sbjct: 499 VVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMALNLWH 558

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
             +N  + P +  +N +I  LC    V+ A+ +F +M     +P+  T+N ++ GL   G
Sbjct: 559 QCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIMEGLYKAG 618

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE-LFEKMGSGVCLPNLDTY 420
           +   AL+   R+ +   +P++ +YNI  +  C    +   +E L++ +  G+ LPN  T+
Sbjct: 619 DCVEALKIWDRILEAGLQPDIISYNITFKGLCSCARVSDAIEFLYDALDRGI-LPNAPTW 677

Query: 421 NILISSM 427
           N+L+ ++
Sbjct: 678 NVLVRAV 684



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 133/246 (54%), Gaps = 5/246 (2%)

Query: 152 GKADRAVKIFLSMHEHGCRQSLNS--FNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVI 208
           G  ++AV++   M ++  R+ LNS  FN++++   +  K+E+A ++ +  + K  A  V+
Sbjct: 443 GMLEQAVELIHQMKKN--RRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSKDCAPTVV 500

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           SYN I NG C  +R + A   LKEM++ GL P++ TY++++ G  R  +++ A   + + 
Sbjct: 501 SYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMALNLWHQC 560

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
             ++ + D+  +  I+HG     ++  A  +F  M     +P + T+N +++ L K    
Sbjct: 561 INKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIMEGLYKAGDC 620

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
             A+ +++ ++  G  P+  +YN+  +GLC    +  A+EF+    D    PN  T+N+L
Sbjct: 621 VEALKIWDRILEAGLQPDIISYNITFKGLCSCARVSDAIEFLYDALDRGILPNAPTWNVL 680

Query: 389 IRYFCD 394
           +R   D
Sbjct: 681 VRAVVD 686



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 143/297 (48%), Gaps = 7/297 (2%)

Query: 189 VEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR-GLNPNLTTYNI 247
           V +  +L +  R     DV    + A   C     ++AL + + MVD  G NP + ++N 
Sbjct: 62  VGRIVDLMRAQRCTCSEDVALSAIKAYAKC--SMPDQALNLFQNMVDIFGCNPGIRSFNS 119

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           +L  +  + Q  EA  FF   +      ++ TY  ++       + ++ + +   M   G
Sbjct: 120 MLNAFIESNQWREAELFFTYFQTAGMSPNLQTYNILIKISCKKRQFEKGKGLLTWMFENG 179

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           + P + +Y  +I  L K  ++ +A+ +F+EM  +G  P+   YN++I G    G+  +A 
Sbjct: 180 LNPDILSYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKAN 239

Query: 368 EFVGRM-KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
           E   R+  +    P+V+TYNI+I   C  G+++  +E++ +M      P+L T++ +I  
Sbjct: 240 EIWKRLLTESSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHG 299

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           +    K+ +   A K+  EM++ G  P   T+N +L+GL   G      E+  + S+
Sbjct: 300 L---SKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSK 353



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/183 (20%), Positives = 78/183 (42%), Gaps = 1/183 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           S++  I+   +   +   +  +  M    L P   T++++ +      K D A+ ++   
Sbjct: 501 SYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMALNLWHQC 560

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRT 223
                +  L   N I+  LC  +KV+ A  +F   R      D++++N I  G       
Sbjct: 561 INKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIMEGLYKAGDC 620

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +AL++   +++ GL P++ +YNI  KG     ++ +A  F  +   R    +  T+  +
Sbjct: 621 VEALKIWDRILEAGLQPDIISYNITFKGLCSCARVSDAIEFLYDALDRGILPNAPTWNVL 680

Query: 284 VHG 286
           V  
Sbjct: 681 VRA 683


>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 711

 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 110/419 (26%), Positives = 193/419 (46%), Gaps = 42/419 (10%)

Query: 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF--LSMHEHGC 169
           L    R    V  L+ RM  L   P   ++AI+ +R     ++ +A+ +   ++  E  C
Sbjct: 53  LCCTKRTDDAVKVLLRRMTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVC 112

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
              + ++NT++    KE K+ KA NL+ ++ +  F  DV+++N I N  C  +  + A  
Sbjct: 113 SPDVVTYNTVIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAEL 172

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM-------------------- 268
           +L++MVD G+ PN  TY  ++ GY   G+ EEA + F EM                    
Sbjct: 173 LLRQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLC 232

Query: 269 ----KKRKCEI-----------DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
                K   EI           ++VTY  ++HG+   G      + F+ M   G++ +  
Sbjct: 233 KHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCL 292

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
            +  +I    K+  ++ A+L+  EM G+G  P+  TY+ +I  LC  G +  A++   +M
Sbjct: 293 VFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQM 352

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLEL-FEKMGSGVCLPNLDTYNILISSMFVRKK 432
                +PN   Y+ LI+ FC  G++ +  EL +E M +G+  PN+  +N ++ S+    K
Sbjct: 353 IGTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSIC---K 409

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
              ++ A  +   + D G       FN +++G  L+G  G A  +L      G  P  F
Sbjct: 410 EGRVMDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTF 468



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 160/328 (48%), Gaps = 4/328 (1%)

Query: 92  ILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTL--VHRMKSLSLGPTQKTFAIIAERYV 149
           ILS       SP  F ++  ++A  R  R    +   ++M    + P    +  + + + 
Sbjct: 313 ILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFC 372

Query: 150 SAGKADRAVKIFLSMHEHGC-RQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADV 207
           + G   +A ++   M  +G  R ++  FN+I+  +CKE +V  A+++F + +    ++D+
Sbjct: 373 THGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGERSDI 432

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           I +N + +G+CLV    KA  VL  M+  G+ P+  TYN ++ GYF++G+I++    F E
Sbjct: 433 IMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFRE 492

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M  +K +   VTY  I+ G    G    A+ +   M+  G   S+ TYN +++ LC+ + 
Sbjct: 493 MSDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGCGTTVSLPTYNIILKGLCRNNC 552

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
            + AI++F+++       N TT N +I  +      E A +    + D    PN  TY I
Sbjct: 553 TDEAIVMFQKLCTMNVKFNITTLNTMINSMYTVQRREEAKDLFSAISDSGLVPNASTYGI 612

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLP 415
           +IR     G +E    +F  M    C P
Sbjct: 613 MIRNLLKEGSVEEADNMFSSMEKSGCAP 640



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 112/459 (24%), Positives = 188/459 (40%), Gaps = 79/459 (17%)

Query: 103 PSSFDHAIDLAARLRDYRTVWTL-VHRMKSLSLG---PTQKTFAIIAERYVSAGKADRAV 158
           P +F +AI L     D R+   L + RM +   G   P   T+  +   +   GK  +A 
Sbjct: 77  PDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHGFFKEGKIGKAC 136

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKV----------------------------- 189
            ++  M + G    + + N+I++ LCK + V                             
Sbjct: 137 NLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGY 196

Query: 190 ------EKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
                 E+A  +F+   G+    D++S+N   +  C   R+ +A E+   M  +G  PN+
Sbjct: 197 STLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHRPNI 256

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TY I+L GY   G   +   FF  MK      + + +T ++  +   G +  A  +   
Sbjct: 257 VTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSE 316

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M   G+ P V TY+ +I  LC+   + +A+  F +M+G G  PN+  Y+ +I+G C  G+
Sbjct: 317 MQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFCTHGD 376

Query: 363 MERALEFVGRM------------------------------------KDDECEPNVQTYN 386
           + +A E V  M                                    KD     ++  +N
Sbjct: 377 LVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGERSDIIMFN 436

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            LI  +C  GE+ +   + + M S    P+  TYN L++  F   + DD L    L  EM
Sbjct: 437 TLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGL---NLFREM 493

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
            D+   P   T+N +L+GL   G    A+++L     CG
Sbjct: 494 SDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGCG 532



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 154/331 (46%), Gaps = 36/331 (10%)

Query: 175 SFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEV-LKE 232
           ++  +++  C+ ++ E     F ++ R   KAD  + N +    C  KRT+ A++V L+ 
Sbjct: 10  TYGVVMNGCCRARRPELGLAFFGRLLRTGLKADKTAANTVLKCLCCTKRTDDAVKVLLRR 69

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK--CEIDVVTYTTIVHGFGVV 290
           M + G  P+  +Y IVLK      + ++A      M K +  C  DVVTY T++HGF   
Sbjct: 70  MTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHGFFKE 129

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           G+I +A N++  M+  G +P V T+N++I  LCK  +V+NA L+  +MV  G  PN  TY
Sbjct: 130 GKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPNKVTY 189

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
             +I G    G  E A +    M      P++ ++N  +   C  G  +   E+F  M +
Sbjct: 190 TSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAA 249

Query: 411 GVCLPNLDTYNILIS------------SMFVRKKSDDLLV-------------------- 438
               PN+ TY IL+             S F   K D ++                     
Sbjct: 250 KGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDE 309

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
           A  +L EM  +G  P  FT++ +++ L  +G
Sbjct: 310 AMLILSEMQGQGLSPDVFTYSTLISALCRMG 340



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 6/159 (3%)

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE- 368
           P++ TY  ++   C+    E  +  F  ++  G   + T  N V++ LC T   + A++ 
Sbjct: 6   PTIFTYGVVMNGCCRARRPELGLAFFGRLLRTGLKADKTAANTVLKCLCCTKRTDDAVKV 65

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG--SGVCLPNLDTYNILISS 426
            + RM +  C P+  +Y I+++  CD    ++ L+L   M    GVC P++ TYN +I  
Sbjct: 66  LLRRMTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHG 125

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            F   K   +  A  L  EM+ +GF+P   T N ++N L
Sbjct: 126 FF---KEGKIGKACNLYHEMMQQGFVPDVVTHNSIINAL 161


>gi|302757529|ref|XP_002962188.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
 gi|300170847|gb|EFJ37448.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
          Length = 535

 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 110/417 (26%), Positives = 192/417 (46%), Gaps = 20/417 (4%)

Query: 85  KALHFFNILS------YHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQ 138
           KA+ +FN  +      +    A    ++   +D   +  +Y        +M +    PT 
Sbjct: 82  KAVSYFNSRTEEACRLFEAIEAPDSVTYTAIVDGLFKAGNYDAGLEYYEKMVASKCEPTL 141

Query: 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK- 197
            T+ ++ +    A K +RA  +F  M   G +  + ++++++D L K  +V++A  L   
Sbjct: 142 LTYTVLVDGLCKAHKVERACDVFEEMIRKGHKPDIIAYSSLIDGLSKAGRVDEARKLVDL 201

Query: 198 -VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256
            + RG      ++Y  I  G C   R  +A++ ++EM  R L P + TY+ ++ GY   G
Sbjct: 202 MIARGP-PPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMG 260

Query: 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
           ++EEA+    EM  R C  D ++YT  +     +G  + A  VF+ MV  G  P + TY 
Sbjct: 261 KVEEAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYG 320

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
            +I   CK+ S+  A  V   M      PN   Y +++ G   +  +E ALE   R+  D
Sbjct: 321 IIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKD 380

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMG--SGVCLPNLDTYNILISSMF---VRK 431
              P+  TYN +I   C   +++  LEL  +M        P++ TY+++I  +    + +
Sbjct: 381 GILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEE 440

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           ++ DLL       EM+D G +P  FT+  ++  L   G    A E+L    + G  P
Sbjct: 441 RAFDLLA------EMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFP 491



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 104/360 (28%), Positives = 180/360 (50%), Gaps = 6/360 (1%)

Query: 135 GPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN 194
            P   T+  I +    AG  D  ++ +  M    C  +L ++  ++D LCK  KVE+A +
Sbjct: 103 APDSVTYTAIVDGLFKAGNYDAGLEYYEKMVASKCEPTLLTYTVLVDGLCKAHKVERACD 162

Query: 195 LFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
           +F+ + R   K D+I+Y+ + +G     R ++A +++  M+ RG  P    Y  ++ G  
Sbjct: 163 VFEEMIRKGHKPDIIAYSSLIDGLSKAGRVDEARKLVDLMIARGPPPTAVAYTSIVAGLC 222

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
           + G+I+EA +   EM++R+    V TY+ IV G+  +G+++ A  V + M +    P   
Sbjct: 223 KCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRDCAPDTI 282

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           +Y   I+ L      E A  VFE MV KG  P+  TY ++I   C  G M  A   +  M
Sbjct: 283 SYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLM 342

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
                +PN   Y +++  F  +  +E  LEL++++     LP+  TYN +I+++   KK 
Sbjct: 343 DKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKM 402

Query: 434 DDLLVAGKLLIEMVDRG--FMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           D+ L   +LL EM  R     P   T++ +++GL  +G +  A ++L      G +P  F
Sbjct: 403 DEAL---ELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCF 459



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/422 (26%), Positives = 190/422 (45%), Gaps = 26/422 (6%)

Query: 46  LILTSTDPRTLTQTLHCPSL---HWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHS 102
           ++ +  +P  LT T+    L   H   +  D     ++   ++  H  +I++Y       
Sbjct: 132 MVASKCEPTLLTYTVLVDGLCKAHKVERACD-----VFEEMIRKGHKPDIIAY------- 179

Query: 103 PSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFL 162
            SS    +  A R+ + R    LV  M +    PT   +  I       G+   AVK   
Sbjct: 180 -SSLIDGLSKAGRVDEARK---LVDLMIARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQ 235

Query: 163 SMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVK 221
            M     R  +++++ I+       KVE+A+ + +    +  A D ISY +       + 
Sbjct: 236 EMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRDCAPDTISYTMFIEALYSIG 295

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
           R  +A +V + MV++G  P++ TY I++  + + G +  A      M K   + +   YT
Sbjct: 296 RREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYT 355

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
            I+ GF     ++ A  ++  ++  G+LPS  TYN +I  LCK   ++ A+ +  EM  +
Sbjct: 356 MIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRR 415

Query: 342 G--YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
                P+  TY+++I GL   G  ERA + +  M D+   P+  TY  LI+    AG++ 
Sbjct: 416 KEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVS 475

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
           R +EL E+M      P+  TY  L+  +  R   D    A  LL EM+  G  P +FTF 
Sbjct: 476 RAMELLEEMLKAGIFPDDHTYGTLV-QILCRSDVD---AAWDLLQEMMRNGHTPNEFTFK 531

Query: 460 RV 461
            V
Sbjct: 532 AV 533



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 96/404 (23%), Positives = 174/404 (43%), Gaps = 36/404 (8%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           AL FF      P      SSF+  +   A   D+  V  L+  MK+  +     T  +I 
Sbjct: 16  ALGFFQSSISEPNV----SSFNILLRGFAARDDFEVVNALLREMKARGITSNGATHGVIL 71

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA 205
               +    D+AV  F S  E  CR                           +F      
Sbjct: 72  SALCARRDLDKAVSYFNSRTEEACR---------------------------LFEAIEAP 104

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           D ++Y  I +G       +  LE  ++MV     P L TY +++ G  +A ++E A   F
Sbjct: 105 DSVTYTAIVDGLFKAGNYDAGLEYYEKMVASKCEPTLLTYTVLVDGLCKAHKVERACDVF 164

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
            EM ++  + D++ Y++++ G    G +  AR + D M+  G  P+   Y +++  LCK 
Sbjct: 165 EEMIRKGHKPDIIAYSSLIDGLSKAGRVDEARKLVDLMIARGPPPTAVAYTSIVAGLCKC 224

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
             ++ A+   +EM  +   P   TY+ ++ G    G++E A   +  M D +C P+  +Y
Sbjct: 225 GRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRDCAPDTISY 284

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
            + I      G  E   ++FE M    C P++ TY I+I + F ++ S   + A   ++ 
Sbjct: 285 TMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDN-FCKEGS---MAAATHVLR 340

Query: 446 MVDRGFM-PRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           ++D+  + P ++ +  +++G +       A E+ +   + G LP
Sbjct: 341 LMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILP 384



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 7/124 (5%)

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           N ++  L   G++  AL F    +    EPNV ++NIL+R F    + E    L  +M +
Sbjct: 1   NSLLLALVRGGQLSDALGF---FQSSISEPNVSSFNILLRGFAARDDFEVVNALLREMKA 57

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF----MPRKFTFNRVLNGLL 466
                N  T+ +++S++  R+  D  +       E   R F     P   T+  +++GL 
Sbjct: 58  RGITSNGATHGVILSALCARRDLDKAVSYFNSRTEEACRLFEAIEAPDSVTYTAIVDGLF 117

Query: 467 LIGN 470
             GN
Sbjct: 118 KAGN 121


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 183/344 (53%), Gaps = 9/344 (2%)

Query: 100 AHS--PSSFDHAI--DLAARLRDYRTVWTLVHRM--KSLSLGPTQKTFAIIAERYVSAGK 153
           +HS  P  F ++I  D   R  + +T+ +L      K + LG    T +I+       GK
Sbjct: 292 SHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAY--TCSILLNGLCKDGK 349

Query: 154 ADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNV 212
             +A ++F  +   G   +   +NT+++  C+ + +  A+ +F+  + +  + D I+YN 
Sbjct: 350 VAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNA 409

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           + NG C ++   KA +++ EM   G++P++ T+N ++  Y  AGQ+E+ +    +M+++ 
Sbjct: 410 LINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKG 469

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
            + DV+++ ++V  F   G+I  A  + D M+   V P+   YN++I    +    E A+
Sbjct: 470 IKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAL 529

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
           L+ E+M   G   +  TYN++++GLC + +++ A E +  +++    P+V +YN +I   
Sbjct: 530 LLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISAC 589

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
           C+ G+ ++ LEL ++M      P L T + L+S++    +  D+
Sbjct: 590 CNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDM 633



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 175/348 (50%), Gaps = 6/348 (1%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            L+  M S S+ P   T++I+ +     G++   + +F    + G      + + +L+ L
Sbjct: 285 ALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGL 344

Query: 184 CKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           CK+ KV KA  +F+  V  G     VI YN + NG+C V+    A  + ++M  R + P+
Sbjct: 345 CKDGKVAKAKQVFEMLVHTGLVPTTVI-YNTLINGYCQVRDLRGAFCIFEQMKSRHIRPD 403

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
             TYN ++ G  +   + +A    +EM+K   +  V T+ T++  +G  G++++   V  
Sbjct: 404 HITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLS 463

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M   G+   V ++ ++++  CK   +  A+ + ++M+ K   PN+  YN +I     +G
Sbjct: 464 DMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESG 523

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
           + E+AL  V +MK+     ++ TYN+L++  C + +I+   EL   + +    P++ +YN
Sbjct: 524 DTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYN 583

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
            +IS+   +  +D  L   +LL EM   G  P   T + +++ L   G
Sbjct: 584 TIISACCNKGDTDKAL---ELLQEMNKYGIRPTLRTCHTLVSALASAG 628



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 174/357 (48%), Gaps = 8/357 (2%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFA---IIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           D      ++ RM      P    F+   +IA  + S GK   A+K+F  M + G   +  
Sbjct: 172 DLDVALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRS-GKGSDALKVFDEMVDMGVAPNRI 230

Query: 175 SFNTILDLLCKEKKVEKAYNL-FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           ++NT++D   K   +E  + L  ++     K +V++YNV+ +G C   R ++   ++ EM
Sbjct: 231 TYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEM 290

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
               + P+  TY+I+  G  R G+ +     F E  K+   +   T + +++G    G++
Sbjct: 291 ASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKV 350

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
            +A+ VF+ +V+ G++P+   YN +I   C+   +  A  +FE+M  +   P+  TYN +
Sbjct: 351 AKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNAL 410

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           I GLC    + +A + V  M+    +P+V+T+N LI  +  AG++E+   +   M     
Sbjct: 411 INGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGI 470

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
             ++ ++  ++ +     K+  +  A  +L +M+ +   P    +N +++  +  G+
Sbjct: 471 KSDVISFGSVVKAFC---KNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGD 524



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 137/299 (45%), Gaps = 10/299 (3%)

Query: 172 SLNSFNTILDLLC---KEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
           SL+S N +L+ L    +   V  A+ L        + D  ++N +          + AL 
Sbjct: 121 SLSSCNLLLESLLFVGRHADVRAAFGLL--VAAGARPDTFAWNKVVQACVAAGDLDVALA 178

Query: 229 VLKEM--VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
           +L+ M   +    P+  +YN+V+ G +R+G+  +A + F EM       + +TY T++ G
Sbjct: 179 MLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDG 238

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
               G+++    + D M++ G  P+V TYN ++  LC+   ++    + +EM     +P+
Sbjct: 239 HVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPD 298

Query: 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
             TY+++  GL  TGE +  L                T +IL+   C  G++ +  ++FE
Sbjct: 299 GFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFE 358

Query: 407 KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            +     +P    YN LI+     +   DL  A  +  +M  R   P   T+N ++NGL
Sbjct: 359 MLVHTGLVPTTVIYNTLINGYCQVR---DLRGAFCIFEQMKSRHIRPDHITYNALINGL 414



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 114/251 (45%), Gaps = 5/251 (1%)

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           P+L++ N++L+     G+  +    F  +       D   +  +V      G++  A  +
Sbjct: 120 PSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAM 179

Query: 300 FD--GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
               G   G   P   +YN +I  L +     +A+ VF+EMV  G  PN  TYN +I G 
Sbjct: 180 LRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGH 239

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417
              G++E       +M  D  +PNV TYN+L+   C  G ++    L ++M S   LP+ 
Sbjct: 240 VKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDG 299

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
            TY+IL   +    +S  +L    L  E + +G M   +T + +LNGL   G    AK++
Sbjct: 300 FTYSILFDGLTRTGESQTML---SLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQV 356

Query: 478 LRLQSRCGRLP 488
             +    G +P
Sbjct: 357 FEMLVHTGLVP 367



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 89/196 (45%), Gaps = 8/196 (4%)

Query: 301 DGMVNGGV---LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
           DG   G V   LPS+++ N +++ L       +    F  +V  G  P++  +N V++  
Sbjct: 108 DGACAGEVCSPLPSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQAC 167

Query: 358 CHTGEMERALEFVGRMKDDECEP--NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
              G+++ AL  + RM   E  P  +  +YN++I     +G+    L++F++M      P
Sbjct: 168 VAAGDLDVALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAP 227

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
           N  TYN +I       K  DL    +L  +M+  G  P   T+N +L+GL   G     +
Sbjct: 228 NRITYNTMIDGHV---KGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETR 284

Query: 476 EILRLQSRCGRLPRQF 491
            ++   +    LP  F
Sbjct: 285 ALMDEMASHSMLPDGF 300



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 73/179 (40%), Gaps = 36/179 (20%)

Query: 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
           + P  + +  I + Y+ +G  ++A+ +   M   G   S+ ++N +L  LC+  ++++A 
Sbjct: 505 VAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAE 564

Query: 194 NLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT-------- 244
            L    R +  + DV+SYN I +  C    T+KALE+L+EM   G+ P L T        
Sbjct: 565 ELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSAL 624

Query: 245 ---------------------------YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID 276
                                      Y I++  Y R     +      EM ++    D
Sbjct: 625 ASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIAFD 683


>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 807

 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 184/383 (48%), Gaps = 8/383 (2%)

Query: 97  PTYAHSPSSFDHAIDLAARLRDYRTVWTL-VHRMKSLSLGPTQ---KTFAIIAERYVSAG 152
           P     P +  ++  L +   D R+ W L + RM     G        ++ +       G
Sbjct: 166 PELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCNVVVYSTVVHGLFKEG 225

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYN 211
           K   A  +F  M + G   ++ ++N+++  LCK + V+KA  + +   G   + D ++YN
Sbjct: 226 KVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYN 285

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
            + +G+  + +  +A+ + KEM  RG+ PN  T +  +    + G+IEEA  FF  M  +
Sbjct: 286 TLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAK 345

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
             ++++++Y+T++HG+   G +    N+F+ MV  G++P+   +N ++    K   V  A
Sbjct: 346 GHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREA 405

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
           + +FE+M  +G  P+  TY  VI   C  G M+ A++    M D   EPN   Y  LI+ 
Sbjct: 406 MFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQG 465

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
           FC  G++ +  EL  ++ +    P + ++  LI+ +    K   +  A ++   ++  G 
Sbjct: 466 FCTHGDLVKAEELVYEIRNKGLGPCILSFASLINHLC---KEGRVFEAQRIFDMIIRTGE 522

Query: 452 MPRKFTFNRVLNGLLLIGNQGLA 474
                 F  +++G  LIG    A
Sbjct: 523 KADVNIFTSLIDGYCLIGKMSEA 545



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 192/413 (46%), Gaps = 15/413 (3%)

Query: 77  KRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGP 136
           +  ++  L   H  NI+SY        S+  H    A  L D   ++ L+ R     + P
Sbjct: 336 REFFDSMLAKGHKLNIISY--------STLLHGYATAGCLVDMSNLFNLMVRD---GIVP 384

Query: 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF 196
            Q  F I+   Y   G    A+ IF  M + G    + ++  ++   C+   ++ A + F
Sbjct: 385 NQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKF 444

Query: 197 KVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
                K  + +   Y  +  G+C      KA E++ E+ ++GL P + ++  ++    + 
Sbjct: 445 NHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLINHLCKE 504

Query: 256 GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
           G++ EA R F  + +   + DV  +T+++ G+ ++G++  A  V D MV+ G+ P + TY
Sbjct: 505 GRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTY 564

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
             ++   CK   +++ +++F E++ KG  P + TY +++ GL H G    A E    M +
Sbjct: 565 GTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIE 624

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
                 + TY+IL+   C     E  + +F+K+ +     ++   NI+IS MF  ++ ++
Sbjct: 625 SGIAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVKFDIVILNIMISKMFKARRREE 684

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
              A  L   + D G +P   T+  ++  L+  G+   A+ +  +  + G  P
Sbjct: 685 ---AEGLFASIPDYGLVPTVQTYTIMMENLIKEGSVEEAEGVFSVMLKSGLSP 734



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 152/297 (51%), Gaps = 7/297 (2%)

Query: 172 SLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVL 230
           ++ +++ ++D  C+ ++++ A+  F  + R   KADVI  + +  G C  KRT++A++VL
Sbjct: 102 TVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEAVDVL 161

Query: 231 -KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR--KCEIDVVTYTTIVHGF 287
              M + G  P+  +Y+ VLK     G+ + A        K+   C  +VV Y+T+VHG 
Sbjct: 162 FHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCNVVVYSTVVHGL 221

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
              G++  A ++F  M   GV P+V TYN++I  LCK  +V+ A  +  +MVG G  P++
Sbjct: 222 FKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDN 281

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
            TYN +I G    G+ ++A+     M      PN  T +  + + C  G IE   E F+ 
Sbjct: 282 VTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDS 341

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           M +     N+ +Y+ L+        +  L+    L   MV  G +P +  FN ++NG
Sbjct: 342 MLAKGHKLNIISYSTLLHGY---ATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNG 395



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 158/332 (47%), Gaps = 7/332 (2%)

Query: 151 AGKADRAVKI-FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF---RGKFKAD 206
           A + D AV + F  M E GC     S++T+L  +C + + + A ++ ++     G    +
Sbjct: 151 AKRTDEAVDVLFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCN 210

Query: 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           V+ Y+ + +G     +  +A ++  EM  +G+ PN+ TYN V+    +A  +++A     
Sbjct: 211 VVVYSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILR 270

Query: 267 EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326
           +M     + D VTY T++HG+  +G+ K+A  +F  M + GV+P+  T +  +  LCK  
Sbjct: 271 QMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHG 330

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
            +E A   F+ M+ KG+  N  +Y+ ++ G    G +         M  D   PN   +N
Sbjct: 331 RIEEAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFN 390

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
           IL+  +   G +   + +FE M      P++ TY  +I +       DD   A      M
Sbjct: 391 ILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDD---AMDKFNHM 447

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           +D+G  P    +  ++ G    G+   A+E++
Sbjct: 448 IDKGVEPNFAVYQCLIQGFCTHGDLVKAEELV 479



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 136/294 (46%), Gaps = 1/294 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P    +  + + + + G   +A ++   +   G    + SF ++++ LCKE +V +A  +
Sbjct: 454 PNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRI 513

Query: 196 FK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F  + R   KADV  +  + +G+CL+ + ++A  V   MV  G+ P++ TY  ++ G  +
Sbjct: 514 FDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCK 573

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G+I++    F E+  +  +    TY  I+ G    G    A+ +F  M+  G+  ++ T
Sbjct: 574 NGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESGIAVTIPT 633

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y+ ++  LC+ +  E AI VF+++       +    N++I  +      E A      + 
Sbjct: 634 YSILLTGLCRNNCTEEAITVFQKLCAMNVKFDIVILNIMISKMFKARRREEAEGLFASIP 693

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
           D    P VQTY I++      G +E    +F  M      P     N+++ ++ 
Sbjct: 694 DYGLVPTVQTYTIMMENLIKEGSVEEAEGVFSVMLKSGLSPTSHFINVIVRTLL 747



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 103/222 (46%), Gaps = 8/222 (3%)

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           P + TY+I++    RA +++ A+ FF  + ++  + DV+  ++++ G         A +V
Sbjct: 101 PTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEAVDV 160

Query: 300 -FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV--GKGYMPNSTTYNVVIRG 356
            F  M   G +P   +Y+ +++ +C     + A+ +    V  G G   N   Y+ V+ G
Sbjct: 161 LFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCNVVVYSTVVHG 220

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGVCLP 415
           L   G++  A +    M      PNV TYN +I   C A  +++   +  +M G+GV  P
Sbjct: 221 LFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGV-QP 279

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
           +  TYN LI       +      A ++  EM  RG +P   T
Sbjct: 280 DNVTYNTLIHGYSTLGQWKQ---AVRMFKEMTSRGVIPNTVT 318



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
           LP+V TY+ +I   C+   ++ A   F  ++ +G   +    + ++RGLC     + A++
Sbjct: 100 LPTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEAVD 159

Query: 369 FV-GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE---KMGSGVCLPNLDTYNILI 424
            +  RM +  C P+  +Y+ +++  CD G  +  L++     K G G C  N+  Y+ ++
Sbjct: 160 VLFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGGG-CPCNVVVYSTVV 218

Query: 425 SSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
             +F   K  +   A  L  EM  +G  P   T+N V++ L        A+ ILR
Sbjct: 219 HGLFKEGKVGE---ACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILR 270


>gi|222422989|dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
          Length = 536

 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 116/456 (25%), Positives = 206/456 (45%), Gaps = 47/456 (10%)

Query: 64  SLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVW 123
           S +  P +  +++K+L N+      F+    +     HS  +++       +   +    
Sbjct: 64  SKNLNPFISFEVVKKLDNNPHIGFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGLHDLAG 123

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE-HGCRQSLNSFNTILDL 182
            +   MKS  + P  +    +   +   GK   A  + L   E  GC   +NS   +L+ 
Sbjct: 124 QMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQSFEVEGCCMVVNS---LLNT 180

Query: 183 LCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           L K  +VE A  LF +  R +   D  ++N++  G C V +  KALE+L  M   G  P+
Sbjct: 181 LVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPD 240

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK-CEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           + TYN +++G+ ++ ++ +A   F ++K    C  DVVTYT+++ G+   G+++ A ++ 
Sbjct: 241 IVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLL 300

Query: 301 DGM---------------VNG--------------------GVLPSVATYNAMIQVLCKK 325
           D M               V+G                    G  P V T+ ++I   C+ 
Sbjct: 301 DDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRV 360

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
             V     ++EEM  +G  PN+ TY+++I  LC+   + +A E +G++   +  P    Y
Sbjct: 361 GQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMY 420

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           N +I  FC AG++     + E+M    C P+  T+ ILI    ++ +   +  A  +  +
Sbjct: 421 NPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGR---MFEAVSIFHK 477

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481
           MV  G  P K T + +L+ LL     G+AKE   L 
Sbjct: 478 MVAIGCSPDKITVSSLLSCLL---KAGMAKEAYHLN 510


>gi|125582060|gb|EAZ22991.1| hypothetical protein OsJ_06687 [Oryza sativa Japonica Group]
          Length = 466

 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 104/391 (26%), Positives = 189/391 (48%), Gaps = 16/391 (4%)

Query: 82  HALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTF 141
           H  +AL   N +   P      ++    + +A R  D   +  L+  M      P + TF
Sbjct: 92  HVDQALDLLNTMLCKPNTVCYNAAL-KGLCIAERWED---IGELMAEMVRKGCSPNEATF 147

Query: 142 AIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG 201
           +++          D AV++   M ++GC     ++N I++ L +  +V+ A  L      
Sbjct: 148 SMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRLLNSM-- 205

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
             K D + +N +  G+C  +R + A E++ +M          T+NI++    + G +  A
Sbjct: 206 VCKPDALGFNAVLKGFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDMLCQNGLVNYA 265

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
            + F +M + +C  D+VTY+++++GF   G ++ A  +F  M      P + +YNA+++ 
Sbjct: 266 TQVFEQMPRYRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRSM---PCKPDIFSYNAVLKG 322

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           LC+    E+A  +  EMVGK   PN  T+N++I  LC  G ++RA+E + +M +    P+
Sbjct: 323 LCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPD 382

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
           + TYN LI  F + G ++  L+L   M    C P+  +YN  +  +   ++  D   A +
Sbjct: 383 IFTYNALINGFSEQGRLDDALKLLSTMS---CKPDAISYNSTLKGLCRAERWQD---AEE 436

Query: 442 LLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
           L+ EM+     P + TF +  N LL+    G
Sbjct: 437 LVAEMLRNKCTPNEVTF-KYANHLLMPNRAG 466



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 169/356 (47%), Gaps = 11/356 (3%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P + TFA     +   G  DRAV++   M  +GC   +  ++T+++   ++  V++A +L
Sbjct: 40  PNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDL 99

Query: 196 FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
                   K + + YN    G C+ +R     E++ EMV +G +PN  T+++++    + 
Sbjct: 100 LNTML--CKPNTVCYNAALKGLCIAERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQN 157

Query: 256 GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
             ++ A     +M+K  CE D V Y  I++     G +  A  + + MV     P    +
Sbjct: 158 NLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRLLNSMV---CKPDALGF 214

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           NA+++  C+ +   +A  +  +M          T+N++I  LC  G +  A +   +M  
Sbjct: 215 NAVLKGFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDMLCQNGLVNYATQVFEQMPR 274

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
             C P++ TY+ L+  F + G +E  ++LF  M    C P++ +YN ++  +    + +D
Sbjct: 275 YRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRSMP---CKPDIFSYNAVLKGLCRAARWED 331

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
              AG+L+ EMV +   P + TFN ++N L   G    A E+L      G  P  F
Sbjct: 332 ---AGELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIF 384



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 138/278 (49%), Gaps = 9/278 (3%)

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           D  +YN +  G C+ K+  +A E++ EM+     PN  T+   ++ + + G ++ A +  
Sbjct: 6   DTYTYNTVLKGLCIAKKWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQLL 65

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
            +M +  C  DVV Y+T+++GF   G + +A ++ + M+     P+   YNA ++ LC  
Sbjct: 66  DQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTML---CKPNTVCYNAALKGLCIA 122

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
           +  E+   +  EMV KG  PN  T++++I  LC    ++ A+E + +M+   CEP+   Y
Sbjct: 123 ERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNY 182

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           NI+I    + G ++  L L   M   VC P+   +N ++      ++  D   A +L+ +
Sbjct: 183 NIIINSLSERGRVDDALRLLNSM---VCKPDALGFNAVLKGFCRAERWHD---ASELIAQ 236

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           M        + TFN +++ L   G    A ++     R
Sbjct: 237 MFRDDCPLIEMTFNILIDMLCQNGLVNYATQVFEQMPR 274



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 110/226 (48%), Gaps = 9/226 (3%)

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           P+  TYN VLKG   A + EEA     EM + +C  + VT+ T +  F   G + RA  +
Sbjct: 5   PDTYTYNTVLKGLCIAKKWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQL 64

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
            D M   G  P V  Y+ +I    ++  V+ A+ +   M+ K   PN+  YN  ++GLC 
Sbjct: 65  LDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTMLCK---PNTVCYNAALKGLCI 121

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419
               E   E +  M    C PN  T+++LI   C    ++  +E+ E+M    C P+   
Sbjct: 122 AERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVN 181

Query: 420 YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           YNI+I+S+  R + DD L   +LL  MV +   P    FN VL G 
Sbjct: 182 YNIIINSLSERGRVDDAL---RLLNSMVCK---PDALGFNAVLKGF 221



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 90/181 (49%), Gaps = 6/181 (3%)

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           V P   TYN +++ LC     E A  +  EM+     PN  T+   IR  C  G ++RA+
Sbjct: 3   VAPDTYTYNTVLKGLCIAKKWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAV 62

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           + + +M    C P+V  Y+ LI  F + G +++ L+L   M   +C PN   YN  +  +
Sbjct: 63  QLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTM---LCKPNTVCYNAALKGL 119

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
            + ++ +D+   G+L+ EMV +G  P + TF+ +++ L        A E+L    + G  
Sbjct: 120 CIAERWEDI---GELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCE 176

Query: 488 P 488
           P
Sbjct: 177 P 177


>gi|22128591|gb|AAM52341.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 592

 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 182/358 (50%), Gaps = 6/358 (1%)

Query: 82  HALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRD--YRTVWTLVHRMKSLSLGPTQK 139
           H  KA   F++L      +  P++  ++I + A  +D       +L++ MK  S+ P   
Sbjct: 193 HTQKA---FDLLRLMEQGSTKPNTCIYSIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIF 249

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           T++ + +      + +    +FL M       ++ +FN+++D LCKE KVE A  + +  
Sbjct: 250 TYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYM 309

Query: 200 RGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
             K    DVI+YN+I +G+ L  + ++A E+   M+++ + PN+ +YNI++ GY R  +I
Sbjct: 310 IEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPNIISYNILINGYARQKKI 369

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           +EA +   E+ ++  +  +VT   ++HG   +G  K A+N FD M++ G +P + T+  +
Sbjct: 370 DEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTL 429

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           +    K   VE A+  F ++  +    N   Y  VI GLC  G++++A     ++     
Sbjct: 430 LGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGL 489

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
            P+V TY  +I  +C  G ++   ++  KM    CL +  TYN+++       K  ++
Sbjct: 490 HPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEM 547



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 181/381 (47%), Gaps = 12/381 (3%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           S  SF   +     ++ Y +V +L   +  L +   +   +I+        + D    + 
Sbjct: 71  SVVSFSKLLKALVHMKHYSSVVSLFREIHKLRIPVHEFILSIVVNSCCLMHRTDLGFSVL 130

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCL 219
               + G   +   FNT+L  L  E KV+ A +LFK  V     + + + Y  + NG C 
Sbjct: 131 AIHFKKGIPFNQVIFNTLLRGLFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCK 190

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
              T KA ++L+ M      PN   Y+IV+  + + G ++ A     EMK++    D+ T
Sbjct: 191 KGHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFT 250

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y+T++     + + +  R +F  M++  + P+V T+N++I  LCK+  VE+A  +   M+
Sbjct: 251 YSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMI 310

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            KG  P+  TYN++I G    G+++RA E    M +   EPN+ +YNILI  +    +I+
Sbjct: 311 EKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPNIISYNILINGYARQKKID 370

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFV--RKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
             +++  ++      P++ T N+L+  +F   R KS     A     EM+  G +P  +T
Sbjct: 371 EAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKS-----AQNFFDEMLSAGHIPDLYT 425

Query: 458 FNRVLNGLLLIGNQGLAKEIL 478
              +L G       GL +E +
Sbjct: 426 HCTLLGGYF---KNGLVEEAM 443



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 158/310 (50%), Gaps = 3/310 (0%)

Query: 103 PSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P  F ++  ID   +L  +  V TL   M  L++ P   TF  + +     GK + A +I
Sbjct: 246 PDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEI 305

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCL 219
              M E G    + ++N I+D      +V++A  +F     K  + ++ISYN++ NG+  
Sbjct: 306 MRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPNIISYNILINGYAR 365

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
            K+ ++A++V +E+  +GL P++ T N++L G F  G+ + A  FF EM       D+ T
Sbjct: 366 QKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYT 425

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           + T++ G+   G ++ A + F  +       ++  Y A+I  LCK   ++ A   FE++ 
Sbjct: 426 HCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLP 485

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             G  P+  TY  +I G C  G ++ A + + +M+D+ C  + +TYN+++R F  + ++ 
Sbjct: 486 LIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVS 545

Query: 400 RGLELFEKMG 409
                 E++ 
Sbjct: 546 EMKAFLEEIA 555



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/367 (21%), Positives = 166/367 (45%), Gaps = 39/367 (10%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P +  +  +       G   +A  +   M +   + +   ++ ++D  CK+  ++ A +L
Sbjct: 176 PNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAFCKDGMLDGATSL 235

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
               + K    D+ +Y+ + +  C + +      +  EM+   + PN+ T+N V+ G  +
Sbjct: 236 LNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCK 295

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G++E+A      M ++  + DV+TY  I+ G+G+ G++ RAR +FD M+N  + P++ +
Sbjct: 296 EGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPNIIS 355

Query: 315 YNAMIQVLCKKDSVENAILV-----------------------------------FEEMV 339
           YN +I    ++  ++ A+ V                                   F+EM+
Sbjct: 356 YNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEML 415

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             G++P+  T+  ++ G    G +E A+    +++    + N+Q Y  +I   C  G+++
Sbjct: 416 SAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLD 475

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
           +    FEK+      P++ TY  +IS        D+   A  +L +M D G +    T+N
Sbjct: 476 KAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDE---AKDMLRKMEDNGCLADNRTYN 532

Query: 460 RVLNGLL 466
            ++ G L
Sbjct: 533 VIVRGFL 539


>gi|242051246|ref|XP_002463367.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
 gi|241926744|gb|EER99888.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
          Length = 543

 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 172/361 (47%), Gaps = 4/361 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           ++  +D   R +D   V  L+  M++  +  T  T+ I+ +   +AG   +   +   M 
Sbjct: 170 YNSLLDCYVRRKDDARVQELLEIMENGGIEATVGTYTILVDSLSTAGDISKVEAVVDEMK 229

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTN 224
                  +  +  +++  C+   V +A  +F    G   + +  +Y V+ NG+C + +  
Sbjct: 230 AKNVAGDVYLYTAVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGVLINGFCKIGQME 289

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
            A  +L +M  RG+  N   +N ++ GY R G ++ A +    M+K   E+DV TY T+ 
Sbjct: 290 AAEMLLADMQGRGVGHNQIIFNTMIDGYCRQGMVDNALKVKAAMEKMGIELDVYTYNTLA 349

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
            G   V  +  A+ +   M+  GV P+  TY  +I + CK+  +  A  +F EM GKG M
Sbjct: 350 CGLCRVNRMAEAKTLLHIMIEKGVPPNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAM 409

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           P+  TYNV++ G    G +  A  F   M+     P+V TY  L+   C  G+++  L+L
Sbjct: 410 PSVVTYNVMMDGYIKKGSIREAERFRKEMEKKGLVPDVYTYASLVHGHCVNGKVDVALKL 469

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           FE+M      PN+  Y  LIS +    +S++   A +L  +M+  G  P    ++ ++  
Sbjct: 470 FEEMKHRGTEPNVVAYTALISGLAKEGRSEE---AFQLYDDMLKAGLTPDDSLYSALVGS 526

Query: 465 L 465
           L
Sbjct: 527 L 527



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 151/318 (47%), Gaps = 8/318 (2%)

Query: 177 NTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKA--LEVLKEM 233
           + ++D  CK  +V+ A  L  ++ R   + + + YN + +  C V+R + A   E+L+ M
Sbjct: 136 SVVVDGFCKSGRVDDARALLDEMPRHGVRLNALCYNSLLD--CYVRRKDDARVQELLEIM 193

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
            + G+   + TY I++     AG I +      EMK +    DV  YT +++ +   G +
Sbjct: 194 ENGGIEATVGTYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRAGNV 253

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           +RA  VFD  V  G+ P+  TY  +I   CK   +E A ++  +M G+G   N   +N +
Sbjct: 254 RRASEVFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTM 313

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           I G C  G ++ AL+    M+    E +V TYN L    C    +     L   M     
Sbjct: 314 IDGYCRQGMVDNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGV 373

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGL 473
            PN  TY  LIS   +  K  D++ A +L  EM  +G MP   T+N +++G +  G+   
Sbjct: 374 PPNYVTYTTLIS---IHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIRE 430

Query: 474 AKEILRLQSRCGRLPRQF 491
           A+   +   + G +P  +
Sbjct: 431 AERFRKEMEKKGLVPDVY 448


>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
 gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
          Length = 796

 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 102/352 (28%), Positives = 167/352 (47%), Gaps = 4/352 (1%)

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186
            +M    + P   T+  +   Y+S G+    V++   M  HG      ++  +LD LCK+
Sbjct: 263 QQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKK 322

Query: 187 KKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
            K  +A  LF  + R   K DV  Y +I +G+      ++    L  MV  G++PN   +
Sbjct: 323 GKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYIF 382

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           NIV   + +   I EA   F +M+++    +VV Y T++     +G +  A   F+ M+N
Sbjct: 383 NIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMIN 442

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            GV P++  + +++  LC  D  E A  +F EMV +G  PN   +N ++  LC  G + +
Sbjct: 443 EGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMK 502

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           A   +  M+     P++ +YN LIR  C  G+ +   +L + M S    PN  TYN L+ 
Sbjct: 503 AQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLLH 562

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
                 + DD   A  +  EM+  G  P   T+N +L+GL        AKE+
Sbjct: 563 GYCRDGRIDD---AYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKEL 611



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 106/370 (28%), Positives = 178/370 (48%), Gaps = 9/370 (2%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           +A+  FN +        SP+  ++A  ID   +L          ++M +  + P    F 
Sbjct: 397 EAMDIFNKMRQQ---GLSPNVVNYATLIDALCKLGRVDDAELKFNQMINEGVAPNIVVFT 453

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RG 201
            +     +  K ++A ++F  M   G   ++  FNTI+  LC E +V KA  L  +  R 
Sbjct: 454 SLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERV 513

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
             + D+ISYN +  G CLV +T++A ++L  M+  GL PN  TYN +L GY R G+I++A
Sbjct: 514 GTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDA 573

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
           +  F EM        VVTY TI+HG         A+ ++  M+  G   S+ TYN ++  
Sbjct: 574 YSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSGKQWSIYTYNIILNG 633

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           L K + V+ A+ +F+ +  K    +  T+N++I  L   G  E A+     +  +   P+
Sbjct: 634 LSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDGRKEDAMNLFATISANGLVPD 693

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
           V TY ++     + G +E    +F +M    C PN    N L+  + +R    D+  AG 
Sbjct: 694 VTTYRLIAENLIEEGSLEEFDGMFSEMEKSGCAPNSLMLNFLVRRLLLR---GDISRAGA 750

Query: 442 LLIEMVDRGF 451
            L ++ ++ F
Sbjct: 751 YLSKIDEKNF 760



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 170/376 (45%), Gaps = 37/376 (9%)

Query: 150 SAGKADRAVKIFLS-MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKA-- 205
            A +   A+ + L  M E GC  ++ S+NT+L   C E + E+A  L  +   G+ ++  
Sbjct: 142 DAKRVGEAMGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQVRSCP 201

Query: 206 -DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
            +++SYN + NG+    + +KA  +  +M D+G+ PN+ TY IV+ G  +A  ++ A   
Sbjct: 202 PNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGV 261

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
           F +M  +    ++VTYT ++HG+  +G+ K    +   M   G+ P   TY  ++  LCK
Sbjct: 262 FQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCK 321

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
           K     A  +F+ M+ KG  P+ + Y +++ G    G +     F+  M  +   PN   
Sbjct: 322 KGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYI 381

Query: 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV------ 438
           +NI+   F     I   +++F KM      PN+  Y  LI ++    + DD  +      
Sbjct: 382 FNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMI 441

Query: 439 --------------------------AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
                                     AG+L  EMV++G  P    FN ++  L   G   
Sbjct: 442 NEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVM 501

Query: 473 LAKEILRLQSRCGRLP 488
            A+ ++ L  R G  P
Sbjct: 502 KAQRLIDLMERVGTRP 517



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 178/371 (47%), Gaps = 45/371 (12%)

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
           S  P   ++  +   + + G+ D+A  +FL M + G   ++ ++  ++D LCK + V++A
Sbjct: 199 SCPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRA 258

Query: 193 YNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
             +F+    K  + ++++Y  + +G+  + +  + + +LKEM   GL P+  TY ++L  
Sbjct: 259 EGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDY 318

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE------------------- 292
             + G+  EA + F  M ++  + DV  Y  I+HG+   G                    
Sbjct: 319 LCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPN 378

Query: 293 ----------------IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE 336
                           I  A ++F+ M   G+ P+V  Y  +I  LCK   V++A L F 
Sbjct: 379 HYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFN 438

Query: 337 EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
           +M+ +G  PN   +  ++ GLC   + E+A E    M +    PNV  +N ++   C  G
Sbjct: 439 QMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEG 498

Query: 397 EI---ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
            +   +R ++L E++G+    P++ +YN LI    +  K+D+   A KLL  M+  G  P
Sbjct: 499 RVMKAQRLIDLMERVGT---RPDIISYNALIRGHCLVGKTDE---ASKLLDIMLSVGLKP 552

Query: 454 RKFTFNRVLNG 464
            + T+N +L+G
Sbjct: 553 NECTYNTLLHG 563



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 144/294 (48%), Gaps = 9/294 (3%)

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKRTNKALEVL-K 231
           +++ ++   C+  ++E  +  F +    G    DV+  N +  G C  KR  +A+ VL +
Sbjct: 96  TYSILVGCFCRMGRLEHGFAAFGLILKTGWRVNDVVVVNRLLKGLCDAKRVGEAMGVLLR 155

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM---KKRKCEIDVVTYTTIVHGFG 288
            M + G  PN+ +YN +LKG+    + EEA      M   + R C  ++V+Y T+++GF 
Sbjct: 156 RMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQVRSCPPNLVSYNTVINGFF 215

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G++ +A N+F  M + G+ P+V TY  +I  LCK   V+ A  VF++M+ KG  PN  
Sbjct: 216 TEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRPNIV 275

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           TY  +I G    G+ +  +  +  M     EP+  TY +L+ Y C  G+     +LF+ M
Sbjct: 276 TYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSM 335

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
                 P++  Y I++     +    ++      L  MV  G  P  + FN V 
Sbjct: 336 IRKGIKPDVSIYGIILHGYATKGALSEM---HSFLDLMVGNGISPNHYIFNIVF 386



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 8/163 (4%)

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV-VIRGLCHTGEMERA 366
           V P V TY+ ++   C+   +E+    F  ++  G+  N       +++GLC    +  A
Sbjct: 90  VAPDVFTYSILVGCFCRMGRLEHGFAAFGLILKTGWRVNDVVVVNRLLKGLCDAKRVGEA 149

Query: 367 LE-FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG---VCLPNLDTYNI 422
           +   + RM +  C PNV +YN L++ FCD    E  LEL   M  G    C PNL +YN 
Sbjct: 150 MGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQVRSCPPNLVSYNT 209

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           +I+  F   + D    A  L ++M D+G  P   T+  V++GL
Sbjct: 210 VINGFFTEGQVDK---AYNLFLDMTDQGIPPNVVTYTIVIDGL 249



 Score = 42.0 bits (97), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 66/160 (41%), Gaps = 19/160 (11%)

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
           V+ +N MI+  C K +                 P+  TY++++   C  G +E      G
Sbjct: 76  VSCFNRMIRDCCSKVA-----------------PDVFTYSILVGCFCRMGRLEHGFAAFG 118

Query: 372 R-MKDDECEPNVQTYNILIRYFCDAGEIERGLE-LFEKMGSGVCLPNLDTYNILISSMFV 429
             +K      +V   N L++  CDA  +   +  L  +M    C PN+ +YN L+     
Sbjct: 119 LILKTGWRVNDVVVVNRLLKGLCDAKRVGEAMGVLLRRMSELGCTPNVVSYNTLLKGFCD 178

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
             ++++ L    ++ +   R   P   ++N V+NG    G
Sbjct: 179 ENRAEEALELLHMMADGQVRSCPPNLVSYNTVINGFFTEG 218


>gi|125542844|gb|EAY88983.1| hypothetical protein OsI_10467 [Oryza sativa Indica Group]
          Length = 525

 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 112/460 (24%), Positives = 209/460 (45%), Gaps = 17/460 (3%)

Query: 38  ADPAALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRL-WNHALKALHFFNILSYH 96
           AD  A+  ++  +  P  +   L    +  +  L+D +++R  + H         +    
Sbjct: 36  ADADAVYRMVTAAPTPSAMESALSASGVAISAPLLDLVLRRFRFAHGDPLRALSLLSLAL 95

Query: 97  PTYAHSPSSF--DHAIDLAARLRDYRTVWTLVHRMKSL-SLGPTQKTFAIIAERYVSAGK 153
             +  +PS F  D A+ +  R R +  +W L+   + L     T +T  ++  R      
Sbjct: 96  DRHGVAPSPFALDTALYVLGRARRFAHMWDLLRSSRRLVPDAVTPRTAMVVLGRVAKVCS 155

Query: 154 ADRAVKIFLSMHE----HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVIS 209
               V  F  +       G  Q    FN +L  LC+EK +  A N++   + +FK +  +
Sbjct: 156 VRETVDSFRRLSRMLRGRGDDQEGQLFNALLRTLCQEKSMSDARNVYHALKYEFKVNRQT 215

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           +N++ +GW   K    A   + EM + G+ P+L TYN ++  + +   +E A++   EM+
Sbjct: 216 FNILLSGW---KSAEDAEAFVAEMRELGVEPDLVTYNSLIDCHCKNRGVENAYKLLDEMR 272

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
           ++    DV+TYT+++ G G++G+  +A+++   M   G  P V  YN  I+       + 
Sbjct: 273 EKDISPDVITYTSLIGGLGLIGQPDKAKHLLKEMHELGCYPDVPAYNTAIRNFVIAKRLG 332

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
           +A  + EEM  KG MPN+TTYN+  R      ++  A +   RM+ + C PN Q+   ++
Sbjct: 333 DAFALMEEMASKGLMPNATTYNLFFRCYYWAYDIGSAWQLYERMRSEGCFPNTQSCMFIV 392

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
           R     G + + LEL+  M +          ++L   +    K D+   A +   +M++ 
Sbjct: 393 RLCHRHGRVAQALELWSDMVNNGFGSFTLVSDVLFDLLCDEGKLDE---AERCFHQMIEL 449

Query: 450 GFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPR 489
           G  P    F R+   L+ + N+   + I RL ++  +  R
Sbjct: 450 GQKPSNVAFRRI-KILMQLANR--EESIARLTAQMAQFGR 486


>gi|15225031|ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42570711|ref|NP_973429.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g06000
 gi|4006835|gb|AAC95177.1| hypothetical protein [Arabidopsis thaliana]
 gi|110736272|dbj|BAF00106.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250896|gb|AEC05990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330250897|gb|AEC05991.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 536

 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 116/456 (25%), Positives = 206/456 (45%), Gaps = 47/456 (10%)

Query: 64  SLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVW 123
           S +  P +  +++K+L N+      F+    +     HS  +++       +   +    
Sbjct: 64  SKNLNPFISFEVVKKLDNNPHIGFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGLHDLAG 123

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE-HGCRQSLNSFNTILDL 182
            +   MKS  + P  +    +   +   GK   A  + L   E  GC   +NS   +L+ 
Sbjct: 124 QMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQSFEVEGCCMVVNS---LLNT 180

Query: 183 LCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           L K  +VE A  LF +  R +   D  ++N++  G C V +  KALE+L  M   G  P+
Sbjct: 181 LVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPD 240

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK-CEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           + TYN +++G+ ++ ++ +A   F ++K    C  DVVTYT+++ G+   G+++ A ++ 
Sbjct: 241 IVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLL 300

Query: 301 DGM---------------VNG--------------------GVLPSVATYNAMIQVLCKK 325
           D M               V+G                    G  P V T+ ++I   C+ 
Sbjct: 301 DDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRV 360

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
             V     ++EEM  +G  PN+ TY+++I  LC+   + +A E +G++   +  P    Y
Sbjct: 361 GQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMY 420

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           N +I  FC AG++     + E+M    C P+  T+ ILI    ++ +   +  A  +  +
Sbjct: 421 NPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGR---MFEAVSIFHK 477

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481
           MV  G  P K T + +L+ LL     G+AKE   L 
Sbjct: 478 MVAIGCSPDKITVSSLLSCLL---KAGMAKEAYHLN 510


>gi|115475728|ref|NP_001061460.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|38175588|dbj|BAD01297.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|38175668|dbj|BAD01373.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623429|dbj|BAF23374.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|125602875|gb|EAZ42200.1| hypothetical protein OsJ_26764 [Oryza sativa Japonica Group]
          Length = 806

 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 168/352 (47%), Gaps = 4/352 (1%)

Query: 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ 171
           L  R R   +V ++ + M +  + P               GK   AV I+      G   
Sbjct: 406 LLQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELCKGGKHQEAVGIWFKTLNKGLGV 465

Query: 172 SLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVL 230
           +L + N ++  LC+ K +++A  + +    K  + D I+YN++  G C   +  +A+++ 
Sbjct: 466 NLATSNALIHGLCEGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLH 525

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
            +M  RG  P+L T+N +L  Y   G++EE +    +MK    + D+V+Y TI+ G    
Sbjct: 526 GDMTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKA 585

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
            +I++A+     +++ G+ P+V  YNA+I    +   +  AI   E M   G  P + TY
Sbjct: 586 KDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTY 645

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
             ++  +CH G +E A     + +++  +  V  Y I+I+ +C  G++   +  FE+M S
Sbjct: 646 GSLMYWMCHAGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRS 705

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
               PN  TY  L   M+   KS +   A KL  EMV  G +P   T+  ++
Sbjct: 706 RGISPNKLTYTTL---MYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGTLI 754



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 131/285 (45%), Gaps = 1/285 (0%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           T+ I+        K + A+K+   M   G +  L +FNT+L   C   K+E+ ++L    
Sbjct: 504 TYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQM 563

Query: 200 RGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
           + +  + D++SY  I +G C  K   KA E L E++DRGL PN+  YN ++ GY R G I
Sbjct: 564 KTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDI 623

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
             A      MK    +   VTY ++++     G ++ A+ +F       V   V  Y  M
Sbjct: 624 SGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTIFSQARENNVDLGVIGYTIM 683

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           IQ  CK   +  A+  FEEM  +G  PN  TY  ++     +G  E A +    M     
Sbjct: 684 IQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAYSKSGNSEEASKLFDEMVGSGV 743

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
            P+  TY  LI    +   +++ +    ++ SG    +   YNIL
Sbjct: 744 IPDNITYGTLIARCSEVNSLDKDIGHTAELSSGALTKDDRMYNIL 788



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 170/374 (45%), Gaps = 25/374 (6%)

Query: 102 SPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           +PS  +F   I+  AR   +  V  ++  M+ L + P +  +  +   +   G   +A++
Sbjct: 288 TPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALR 347

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIAN---- 215
           +F  M     + +  ++N I   LCKE ++E+A  + +        D++S  +  +    
Sbjct: 348 LFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERILE--------DMLSIGMTVHCGLF 399

Query: 216 ----GWCL--VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
                W L   +R    + +  EMV RG+ PN       ++   + G+ +EA   + +  
Sbjct: 400 NTVVAWLLQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELCKGGKHQEAVGIWFKTL 459

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
            +   +++ T   ++HG      +K A  V   M+N G+     TYN MI+  CK   +E
Sbjct: 460 NKGLGVNLATSNALIHGLCEGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKME 519

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
            AI +  +M  +G+ P+  T+N ++   C+ G+ME     + +MK +  +P++ +Y  +I
Sbjct: 520 EAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTII 579

Query: 390 RYFCDAGEIERGLE-LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
              C A +I +  E L E M  G+  PN+  YN LI       ++ D+  A   +  M  
Sbjct: 580 DGHCKAKDIRKAKEYLTELMDRGL-KPNVFIYNALIGGY---GRNGDISGAIDAVETMKS 635

Query: 449 RGFMPRKFTFNRVL 462
            G  P   T+  ++
Sbjct: 636 NGIQPTNVTYGSLM 649



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 162/374 (43%), Gaps = 45/374 (12%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN--SFNTILDLLCKEKKVEKAY 193
           P+ KT     E  V AG+ D A ++F  M E     +LN  S+  ++  LCK  KV+  +
Sbjct: 183 PSIKTCNAFLEALVRAGQLDAAREVFDEMRESR-NVALNEYSYTAMIKALCKAGKVDAGF 241

Query: 194 NLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
            +  +++R   +  V++YNV+ +  C   R  +A  +   M   G+ P++ T+ I++ G 
Sbjct: 242 EMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPSVVTFGILINGL 301

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
            R  +  E      EM++     + V Y  ++      G   +A  +FD MV   + P+ 
Sbjct: 302 ARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEMVLKKMKPTA 361

Query: 313 ATYNAMIQVLCKKDSVENAILVFE------------------------------------ 336
            TYN + + LCK+  +E A  + E                                    
Sbjct: 362 VTYNLIAKALCKEGEMERAERILEDMLSIGMTVHCGLFNTVVAWLLQRTRRLESVVSITN 421

Query: 337 EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
           EMV +G  PN       +R LC  G+ + A+    +  +     N+ T N LI   C+  
Sbjct: 422 EMVTRGMRPNDPLMTACMRELCKGGKHQEAVGIWFKTLNKGLGVNLATSNALIHGLCEGK 481

Query: 397 EIERGLELFEKM-GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
            ++   ++ + M   G+ L ++ TYNI+I       K ++ +   KL  +M  RGF P  
Sbjct: 482 YMKEATKVIQTMLNKGIELDSI-TYNIMIRGCCKDSKMEEAI---KLHGDMTRRGFKPDL 537

Query: 456 FTFNRVLNGLLLIG 469
           FTFN +L+    +G
Sbjct: 538 FTFNTLLHAYCNLG 551



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 111/243 (45%), Gaps = 4/243 (1%)

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK-RKCEIDVVTYTTI 283
           +A +  + +  RG  P++ T N  L+   RAGQ++ A   F EM++ R   ++  +YT +
Sbjct: 168 RAADAFRVLSSRGAPPSIKTCNAFLEALVRAGQLDAAREVFDEMRESRNVALNEYSYTAM 227

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +      G++     +   +   G+ P+V TYN ++  LCK   VE A  +   M   G 
Sbjct: 228 IKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGM 287

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+  T+ ++I GL            +  M+     PN   YN LI + C  G   + L 
Sbjct: 288 TPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALR 347

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           LF++M      P   TYN++  ++    K  ++  A ++L +M+  G       FN V+ 
Sbjct: 348 LFDEMVLKKMKPTAVTYNLIAKALC---KEGEMERAERILEDMLSIGMTVHCGLFNTVVA 404

Query: 464 GLL 466
            LL
Sbjct: 405 WLL 407



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 108/258 (41%), Gaps = 36/258 (13%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN- 194
           P   TF  +   Y + GK +    +   M   G +  + S+ TI+D  CK K + KA   
Sbjct: 535 PDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEY 594

Query: 195 LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN-------- 246
           L ++     K +V  YN +  G+      + A++ ++ M   G+ P   TY         
Sbjct: 595 LTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCH 654

Query: 247 ---------------------------IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
                                      I+++GY + G++ EA  +F EM+ R    + +T
Sbjct: 655 AGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLT 714

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           YTT+++ +   G  + A  +FD MV  GV+P   TY  +I    + +S++  I    E+ 
Sbjct: 715 YTTLMYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGTLIARCSEVNSLDKDIGHTAELS 774

Query: 340 GKGYMPNSTTYNVVIRGL 357
                 +   YN++  G+
Sbjct: 775 SGALTKDDRMYNILSNGI 792



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 87/174 (50%), Gaps = 4/174 (2%)

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM-VGKGYMPNSTT 349
           G + RA + F  + + G  PS+ T NA ++ L +   ++ A  VF+EM   +    N  +
Sbjct: 164 GSLCRAADAFRVLSSRGAPPSIKTCNAFLEALVRAGQLDAAREVFDEMRESRNVALNEYS 223

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
           Y  +I+ LC  G+++   E +  +     +P V TYN+L+   C +G +E    L  +M 
Sbjct: 224 YTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRME 283

Query: 410 SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
            G   P++ T+ ILI+ +   ++  ++   G +L EM   G  P +  +N ++ 
Sbjct: 284 QGGMTPSVVTFGILINGLARGERFGEV---GIVLQEMEQLGVSPNEVIYNELIG 334



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 4/142 (2%)

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD-ECEPNVQ 383
           + S+  A   F  +  +G  P+  T N  +  L   G+++ A E    M++      N  
Sbjct: 163 QGSLCRAADAFRVLSSRGAPPSIKTCNAFLEALVRAGQLDAAREVFDEMRESRNVALNEY 222

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
           +Y  +I+  C AG+++ G E+  ++      P + TYN+L+ ++    KS  +  A +L 
Sbjct: 223 SYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALC---KSGRVEEAFRLK 279

Query: 444 IEMVDRGFMPRKFTFNRVLNGL 465
             M   G  P   TF  ++NGL
Sbjct: 280 GRMEQGGMTPSVVTFGILINGL 301


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 108/379 (28%), Positives = 175/379 (46%), Gaps = 53/379 (13%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   TF  +       G+   AV +   M E+G +    ++ T +D +CK      A NL
Sbjct: 180 PDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNL 239

Query: 196 FKVFR--GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
            +        K +V+ Y+ I +G C   R + +  +  EM D+G+ PN+ TYN ++ G+ 
Sbjct: 240 LRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFC 299

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
            +G+   A R   EM +RK   +VVTY  +++ F   G+   A  ++D M+  G++P+  
Sbjct: 300 ISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTI 359

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMP---------------------------- 345
           TYN+MI   CK+D ++ A  +F  M  KG  P                            
Sbjct: 360 TYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEM 419

Query: 346 -------NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
                  N+ TYN +I G C  G++  AL+   +M      P++ T N L+   CD G++
Sbjct: 420 PRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKL 479

Query: 399 ERGLELFEKMG------------SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
           +  LE+F+ M             +GV  P++ TYNILI  +    K    L A +L  EM
Sbjct: 480 KDALEMFKAMQKSKMDLDASHPFNGV-EPDVLTYNILICGLINEGK---FLEAEELYEEM 535

Query: 447 VDRGFMPRKFTFNRVLNGL 465
             RG +P   T++ +++GL
Sbjct: 536 PHRGIVPDTITYSSMIDGL 554



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 166/353 (47%), Gaps = 15/353 (4%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M    + P   T+  +   +V  GK   A +++  M   G   +  ++N+++D  C
Sbjct: 310 LLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFC 369

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K+ +++ A ++F +   K    DV ++  + +G+C  KR +  +E+L EM  RGL  N  
Sbjct: 370 KQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTV 429

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN ++ G+   G +  A     +M       D+VT  T++ G    G++K A  +F  M
Sbjct: 430 TYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAM 489

Query: 304 VNG-----------GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
                         GV P V TYN +I  L  +     A  ++EEM  +G +P++ TY+ 
Sbjct: 490 QKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSS 549

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           +I GLC    ++ A +    M      PNV T+N LI  +C AG ++ GLELF +MG   
Sbjct: 550 MIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRG 609

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            + +   Y  LI      +K  ++  A  +  EM+  G  P   T   +L G 
Sbjct: 610 IVADAIIYITLIYGF---RKVGNINGALDIFQEMISSGVYPDTITIRNMLTGF 659



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 177/387 (45%), Gaps = 47/387 (12%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE-HGCRQSLNSFNTILDL 182
            L+ RM    L P Q T+    +     G    A+ +   M E    + ++  ++ I+D 
Sbjct: 203 ALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDG 262

Query: 183 LCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           LCK+ +   ++NLF   + K    ++++YN +  G+C+  R + A  +L+EM++R ++PN
Sbjct: 263 LCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPN 322

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
           + TYN ++  + + G+  EA   + EM  R    + +TY +++ GF     +  A ++F 
Sbjct: 323 VVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFY 382

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            M   G  P V T+  +I   C    +++ + +  EM  +G + N+ TYN +I G C  G
Sbjct: 383 LMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVG 442

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG------------ 409
           ++  AL+   +M      P++ T N L+   CD G+++  LE+F+ M             
Sbjct: 443 DLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPF 502

Query: 410 SGVCLPNLDTYNILISSMFVRKK--------------------------------SDDLL 437
           +GV  P++ TYNILI  +    K                                   L 
Sbjct: 503 NGV-EPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLD 561

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNG 464
            A ++ + M  + F P   TFN ++NG
Sbjct: 562 EATQMFVSMGSKSFSPNVVTFNTLING 588



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/389 (27%), Positives = 179/389 (46%), Gaps = 9/389 (2%)

Query: 103 PSSFDHAIDLAARLRDYRT--VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           PS  D    + A +R  R   V +L  +M+   +     +F I+ + + S  K   A+  
Sbjct: 79  PSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALST 138

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV 220
           F  + + G    + +F T+L  LC + +V +A +LF       + DV+++  + NG C  
Sbjct: 139 FGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI---CRPDVLTFTTLMNGLCRE 195

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK-RKCEIDVVT 279
            R  +A+ +L  MV+ GL P+  TY   + G  + G    A     +M++    + +VV 
Sbjct: 196 GRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVI 255

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y+ I+ G    G    + N+F  M + G+ P++ TYN MI   C       A  + +EM+
Sbjct: 256 YSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEML 315

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            +   PN  TYN +I      G+   A E    M      PN  TYN +I  FC    ++
Sbjct: 316 ERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLD 375

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
              ++F  M +  C P++ T+  LI      K+ DD +   +LL EM  RG +    T+N
Sbjct: 376 AAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGM---ELLHEMPRRGLVANTVTYN 432

Query: 460 RVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            +++G  L+G+   A ++ +     G  P
Sbjct: 433 TLIHGFCLVGDLNAALDLSQQMISSGVCP 461



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 161/339 (47%), Gaps = 9/339 (2%)

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVI 213
           + A+ +F  M       S+  FN ++  + + ++ +   +L+ K+ R + + D+ S+ ++
Sbjct: 63  EDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTIL 122

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
              +C   +   AL    ++   GL+P++ T+  +L G     ++ EA   F ++    C
Sbjct: 123 IKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI----C 178

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
             DV+T+TT+++G    G +  A  + D MV  G+ P   TY   +  +CK     +A+ 
Sbjct: 179 RPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALN 238

Query: 334 VFEEMVGKGYM-PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
           +  +M    ++ PN   Y+ +I GLC  G    +      M+D    PN+ TYN +I  F
Sbjct: 239 LLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGF 298

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
           C +G       L ++M      PN+ TYN LI++ FV  K      A +L  EM+ RG +
Sbjct: 299 CISGRWSAAQRLLQEMLERKISPNVVTYNALINA-FV--KEGKFFEAAELYDEMLPRGII 355

Query: 453 PRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           P   T+N +++G         A+++  L +  G  P  F
Sbjct: 356 PNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVF 394



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 134/320 (41%), Gaps = 47/320 (14%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+  + + +    + D A  +F  M   GC   + +F T++D  C  K+++    L
Sbjct: 356 PNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMEL 415

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD------------------- 235
             ++ R    A+ ++YN + +G+CLV   N AL++ ++M+                    
Sbjct: 416 LHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCD 475

Query: 236 ---------------------------RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
                                       G+ P++ TYNI++ G    G+  EA   + EM
Sbjct: 476 NGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEM 535

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
             R    D +TY++++ G      +  A  +F  M +    P+V T+N +I   CK   V
Sbjct: 536 PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRV 595

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           ++ + +F EM  +G + ++  Y  +I G    G +  AL+    M      P+  T   +
Sbjct: 596 DDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNM 655

Query: 389 IRYFCDAGEIERGLELFEKM 408
           +  F    E+ER + + E +
Sbjct: 656 LTGFWSKEELERAVAMLEDL 675



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 113/234 (48%), Gaps = 14/234 (5%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE----------- 166
           D      L  +M S  + P   T   + +     GK   A+++F +M +           
Sbjct: 443 DLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPF 502

Query: 167 HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKRTN 224
           +G    + ++N ++  L  E K  +A  L++    RG    D I+Y+ + +G C   R +
Sbjct: 503 NGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRG-IVPDTITYSSMIDGLCKQSRLD 561

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           +A ++   M  +  +PN+ T+N ++ GY +AG++++    F EM +R    D + Y T++
Sbjct: 562 EATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLI 621

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           +GF  VG I  A ++F  M++ GV P   T   M+     K+ +E A+ + E++
Sbjct: 622 YGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDL 675



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 120/255 (47%), Gaps = 12/255 (4%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+H M    L     T+  +   +   G  + A+ +   M   G    + + NT+LD LC
Sbjct: 415 LLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLC 474

Query: 185 KEKKVEKAYNLFKVFR------------GKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
              K++ A  +FK  +               + DV++YN++  G     +  +A E+ +E
Sbjct: 475 DNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEE 534

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M  RG+ P+  TY+ ++ G  +  +++EA + F+ M  +    +VVT+ T+++G+   G 
Sbjct: 535 MPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGR 594

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           +     +F  M   G++     Y  +I    K  ++  A+ +F+EM+  G  P++ T   
Sbjct: 595 VDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRN 654

Query: 353 VIRGLCHTGEMERAL 367
           ++ G     E+ERA+
Sbjct: 655 MLTGFWSKEELERAV 669



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 121/261 (46%), Gaps = 8/261 (3%)

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
           +K    A+++  +M+     P++  +N ++    R  + +     + +M++++   D+ +
Sbjct: 59  IKGLEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYS 118

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           +T ++  F    ++  A + F  +   G+ P V T+  ++  LC    V  A+ +F ++ 
Sbjct: 119 FTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQIC 178

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
                P+  T+  ++ GLC  G +  A+  + RM ++  +P+  TY   +   C  G+  
Sbjct: 179 ----RPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTV 234

Query: 400 RGLELFEKMGSGVCL-PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
             L L  KM     + PN+  Y+ +I  +    +  D   +  L IEM D+G  P   T+
Sbjct: 235 SALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSD---SHNLFIEMQDKGIFPNIVTY 291

Query: 459 NRVLNGLLLIGNQGLAKEILR 479
           N ++ G  + G    A+ +L+
Sbjct: 292 NCMIGGFCISGRWSAAQRLLQ 312


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 169/309 (54%), Gaps = 4/309 (1%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           +L  +M++  + P    +  +     ++G+   A  +   M +   +  + +FN ++D  
Sbjct: 198 SLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAF 257

Query: 184 CKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
            KE K   A  L+ ++ R     ++ +Y  + NG+C+    ++A ++   M  +G  P++
Sbjct: 258 VKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDV 317

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
             Y  ++ G+ +  ++++A + F EM ++    + +TYTT++ GFG VG+   A+ VF  
Sbjct: 318 VAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSH 377

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK---GYMPNSTTYNVVIRGLCH 359
           MV+ GV P++ TYN ++  LC    V+ A+++FE+M  +   G  PN  TYNV++ GLC+
Sbjct: 378 MVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCY 437

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419
            G++E+AL     M+  E +  + TY I+I+  C AG+++  + LF  + S    PN+ T
Sbjct: 438 NGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVT 497

Query: 420 YNILISSMF 428
           Y  +IS +F
Sbjct: 498 YTTMISGLF 506



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 157/321 (48%), Gaps = 6/321 (1%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           + + +M  L   P   TF  +   +    + + A+ +   M E G +  +  + TI+D L
Sbjct: 128 SFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSL 187

Query: 184 CKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CK   V  A +LF        + DV+ Y  + NG C   R   A  +L+ M  R + P++
Sbjct: 188 CKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDV 247

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            T+N ++  + + G+  +A   + EM +     ++ TYT++++GF + G +  AR +F  
Sbjct: 248 ITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYL 307

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M   G  P V  Y ++I   CK   V++A+ +F EM  KG   N+ TY  +I+G    G+
Sbjct: 308 METKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGK 367

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG----SGVCLPNLD 418
              A E    M      PN++TYN+L+   C  G++++ L +FE M      GV  PN+ 
Sbjct: 368 PNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVA-PNIW 426

Query: 419 TYNILISSMFVRKKSDDLLVA 439
           TYN+L+  +    K +  L+ 
Sbjct: 427 TYNVLLHGLCYNGKLEKALMV 447



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 171/366 (46%), Gaps = 17/366 (4%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
            F+ A+DL   + + R + +++   K L++    K F ++             + +   +
Sbjct: 52  QFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVV-------------INLCDHL 98

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRT 223
              G    L + N +++  C+  +   A + L K+ +  F+ D++++  + NG+CL  R 
Sbjct: 99  QIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRM 158

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            +A+ ++ +MV+ G+ P++  Y  ++    + G +  A   F +M+      DVV YT++
Sbjct: 159 EEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSL 218

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           V+G    G  + A ++  GM    + P V T+NA+I    K+    +A  ++ EM+    
Sbjct: 219 VNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSI 278

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN  TY  +I G C  G ++ A +    M+   C P+V  Y  LI  FC   +++  ++
Sbjct: 279 APNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMK 338

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           +F +M       N  TY  LI       K +   VA ++   MV RG  P   T+N +L+
Sbjct: 339 IFYEMSQKGLTGNTITYTTLIQGFGQVGKPN---VAQEVFSHMVSRGVPPNIRTYNVLLH 395

Query: 464 GLLLIG 469
            L   G
Sbjct: 396 CLCYNG 401



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 138/278 (49%), Gaps = 8/278 (2%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  ID   +   +     L + M  +S+ P   T+  +   +   G  D A ++F  M
Sbjct: 249 TFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLM 308

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
              GC   + ++ ++++  CK KKV+ A  +F     K    + I+Y  +  G+  V + 
Sbjct: 309 ETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKP 368

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV----- 278
           N A EV   MV RG+ PN+ TYN++L      G++++A   F +M+KR  E+D V     
Sbjct: 369 NVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKR--EMDGVAPNIW 426

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TY  ++HG    G++++A  VF+ M    +   + TY  +IQ +CK   V+NA+ +F  +
Sbjct: 427 TYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSL 486

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
             KG  PN  TY  +I GL   G    A     +MK+D
Sbjct: 487 PSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKED 524



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 114/265 (43%), Gaps = 3/265 (1%)

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           N+AL++   MV+    P++  +  +L    +  + +        ++      D+ T   +
Sbjct: 54  NEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLL 113

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           ++ F    +   A +    M+  G  P + T+ ++I   C  + +E A+ +  +MV  G 
Sbjct: 114 MNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGI 173

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P+   Y  +I  LC  G +  AL    +M++    P+V  Y  L+   C++G       
Sbjct: 174 KPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADS 233

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           L   M      P++ T+N LI + FV  K    L A +L  EM+     P  FT+  ++N
Sbjct: 234 LLRGMTKRKIKPDVITFNALIDA-FV--KEGKFLDAEELYNEMIRMSIAPNIFTYTSLIN 290

Query: 464 GLLLIGNQGLAKEILRLQSRCGRLP 488
           G  + G    A+++  L    G  P
Sbjct: 291 GFCMEGCVDEARQMFYLMETKGCFP 315



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 104/248 (41%), Gaps = 3/248 (1%)

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            Y  +L+    + Q  EA   F  M + +    ++ +T +++    + +     N+ D +
Sbjct: 39  NYREILRNGLHSLQFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHL 98

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              GV   + T N ++   C+      A     +M+  G+ P+  T+  +I G C    M
Sbjct: 99  QIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRM 158

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           E A+  V +M +   +P+V  Y  +I   C  G +   L LF++M +    P++  Y  L
Sbjct: 159 EEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSL 218

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           ++ +    +  D   A  LL  M  R   P   TFN +++  +  G    A+E+     R
Sbjct: 219 VNGLCNSGRWRD---ADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIR 275

Query: 484 CGRLPRQF 491
               P  F
Sbjct: 276 MSIAPNIF 283



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 94/188 (50%), Gaps = 4/188 (2%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           + + M    L     T+  + + +   GK + A ++F  M   G   ++ ++N +L  LC
Sbjct: 339 IFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLC 398

Query: 185 KEKKVEKAYNLFKVFRGK----FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
              KV+KA  +F+  + +       ++ +YNV+ +G C   +  KAL V ++M  R ++ 
Sbjct: 399 YNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDI 458

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
            + TY I+++G  +AG+++ A   F  +  +  + +VVTYTT++ G    G    A  +F
Sbjct: 459 GIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLF 518

Query: 301 DGMVNGGV 308
             M   GV
Sbjct: 519 RKMKEDGV 526


>gi|125541207|gb|EAY87602.1| hypothetical protein OsI_09013 [Oryza sativa Indica Group]
          Length = 555

 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 108/417 (25%), Positives = 194/417 (46%), Gaps = 19/417 (4%)

Query: 68  TPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAA----RLRDYRTVW 123
           T  LV  ++ RL      A  FF   S+   Y H  ++++  ID+ +    + R +  + 
Sbjct: 111 TTPLVADVLHRLRYDEKLAFRFFVWASHQGGYEHEAATYNDVIDILSGTRYKARQFGVLC 170

Query: 124 TLVHRMKSLSLG--PTQKTFAII---AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
            ++  MK       P      I+    E++++  +   A K  + M         ++ N 
Sbjct: 171 DVLDHMKRRRTRSVPVDDLLGILRAYTEKHLTHLR-KLAKKRRVRMRTP---PETDALNV 226

Query: 179 ILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           +LD  CK   V +A  +F   + K   +  +Y+++  GWC  +   +A++VL+EM+    
Sbjct: 227 LLDAFCKSGMVREAEAVFSRVKRKLLGNAETYSILFFGWCRARDPKRAMKVLEEMIQMKH 286

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID---VVTYTTIVHGFGVVGEIKR 295
            P   TYN  +  +  AG + EA   F  M+     I      TY+ ++      G+++ 
Sbjct: 287 TPENFTYNAAIDSFCSAGLVSEARDLFEFMRTEGSTISSPTAKTYSIMIAALAKAGQMEE 346

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
              +   M   G +P V+TY  +I+ +   D ++ A  V +EM   G+ P+  TYN  ++
Sbjct: 347 CFELISEMRKCGCMPDVSTYKDLIEGMLLVDKLDAAYCVLDEMAKAGFPPDIVTYNCFLK 406

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
            LC   + + ALE   RM +  CEP+V TYN+L+  F +  E +R + ++ +M    C  
Sbjct: 407 VLCGLQKADDALELCERMIEAHCEPSVHTYNMLMVMFFEMREPDRAINIWIEMDKRGCHR 466

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
            +DTY  +I  +F   +++D   A  LL E+++RG       F+ ++  L  +GN G
Sbjct: 467 AVDTYETMIDGLFDSGRTED---ATTLLDEVINRGMKLSYKKFDAIMLRLSAVGNLG 520



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 4/99 (4%)

Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA 439
           P     N+L+  FC +G +     +F ++   + L N +TY+IL    F   ++ D   A
Sbjct: 219 PETDALNVLLDAFCKSGMVREAEAVFSRVKRKL-LGNAETYSILF---FGWCRARDPKRA 274

Query: 440 GKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
            K+L EM+     P  FT+N  ++     G    A+++ 
Sbjct: 275 MKVLEEMIQMKHTPENFTYNAAIDSFCSAGLVSEARDLF 313


>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
          Length = 579

 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 156/297 (52%), Gaps = 1/297 (0%)

Query: 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVIS 209
           AG+ ++   IF  +  +G    + S++ ++  L K  +  +  N+F   + + F  D  +
Sbjct: 275 AGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARA 334

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           YN + +G+C   + +KA E+L+EM ++ + P + TY  ++ G  +  +++EA+  F E K
Sbjct: 335 YNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAK 394

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
            +  E++VV Y++++ GFG VG I  A  + + M+  G+ P+V T+N+++  L K + + 
Sbjct: 395 SKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEIN 454

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
            A++ F+ M      PN+ TY+++I GLC   +  +A  F   M+     PNV TY  +I
Sbjct: 455 EALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMI 514

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
                 G I     LFE+  +   +P+  ++N LI  M    ++ +   AG L   M
Sbjct: 515 SGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQAGWLDTTM 571



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 112/422 (26%), Positives = 190/422 (45%), Gaps = 41/422 (9%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII 144
           +AL  F ++        + S+++  ID+          + ++  M+  SL P   T  I+
Sbjct: 106 EALSLFEVMKKDAE--PNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIM 163

Query: 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKF 203
            +R   A K + A KIF S  + GC     ++ +++D L K+ +V++AY LF K+     
Sbjct: 164 VDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGH 223

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT-------------------- 243
            A+ + Y  +   + +  R     ++ KE++ RG  P+LT                    
Sbjct: 224 NANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRM 283

Query: 244 ---------------TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
                          +Y+I++ G  +AGQ  E    F  MK++   +D   Y  +V GF 
Sbjct: 284 IFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFC 343

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G++ +A  + + M    V P+VATY A++  L K D ++ A ++FEE   KG   N  
Sbjct: 344 KSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVV 403

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            Y+ +I G    G ++ A   +  M      PNV T+N L+     A EI   L  F+ M
Sbjct: 404 LYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSM 463

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
               C PN  TY+ILI+ +   +K +   V      +M  +G +P   T+  +++GL  +
Sbjct: 464 KEMKCPPNTYTYSILINGLCRVQKYNKAFV---FWQDMQKQGLVPNVVTYTTMISGLAKV 520

Query: 469 GN 470
           GN
Sbjct: 521 GN 522



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 192/420 (45%), Gaps = 56/420 (13%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAII-AER--------------YVSAGKADRAVKIFLSMHE 166
           +W L    K+  LG  ++ FA + AER              Y SAG+ + A K+   + E
Sbjct: 25  IWVLC---KAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRE 81

Query: 167 HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKA 226
            GC  S+ SFN+IL  L K++KV++A +LF+V +   + +  +YN+I +  CL  R  +A
Sbjct: 82  RGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGRVEEA 141

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
             +L EM    L PNL T NI++    +A ++EEA++ F    +R C  D VTY +++ G
Sbjct: 142 YRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDG 201

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL--------------------CKKD 326
            G  G++  A  +F+ M++ G   +   Y ++I+                      CK D
Sbjct: 202 LGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPD 261

Query: 327 ---------------SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
                           VE   ++FE++   G++P+  +Y+++I GL   G+         
Sbjct: 262 LTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFH 321

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
            MK      + + YN ++  FC +G++ +  E+ E+M      P + TY  ++  +    
Sbjct: 322 AMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGL---A 378

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           K D L  A  L  E   +G       ++ +++G   +G    A  IL    + G  P  +
Sbjct: 379 KIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVY 438



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 175/366 (47%), Gaps = 5/366 (1%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           S  SF+  +    + R      +L   MK     P   T+ II +     G+ + A +I 
Sbjct: 87  SVVSFNSILTCLGKKRKVDEALSLFEVMKK-DAEPNSSTYNIIIDMLCLGGRVEEAYRIL 145

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLV 220
             M       +L + N ++D LCK +K+E+AY +F+    +    D ++Y  + +G    
Sbjct: 146 DEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKK 205

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
            + ++A  + ++M+D G N N   Y  +++ +F  G+ E+  + F E+ +R C+ D+   
Sbjct: 206 GQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLL 265

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
            T +      GE+++ R +F+ + + G LP V +Y+ +I  L K         +F  M  
Sbjct: 266 NTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQ 325

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           +G+  ++  YN V+ G C +G++ +A E +  MK+   +P V TY  ++        ++ 
Sbjct: 326 QGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDE 385

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
              LFE+  S     N+  Y+ LI       + D+  +   +L EM+ +G  P  +T+N 
Sbjct: 386 AYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYL---ILEEMMKKGLTPNVYTWNS 442

Query: 461 VLNGLL 466
           +L+ L+
Sbjct: 443 LLDALV 448



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 151/316 (47%), Gaps = 7/316 (2%)

Query: 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKAD-VISYNVIAN 215
           A K F  +   G +    S+ +++ +LCK  ++ +A  LF     +       +YN +  
Sbjct: 2   AWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIM 61

Query: 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI 275
           G+    R   A ++L+ + +RG  P++ ++N +L    +  +++EA   F E+ K+  E 
Sbjct: 62  GYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLF-EVMKKDAEP 120

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335
           +  TY  I+    + G ++ A  + D M +  + P++ T N M+  LCK   +E A  +F
Sbjct: 121 NSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIF 180

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
           E    +G  P+  TY  +I GL   G+++ A     +M D     N   Y  LIR F   
Sbjct: 181 ESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIH 240

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV-DRGFMPR 454
           G  E G ++F+++    C P+L   N  +  +F   + +     G+++ E +   GF+P 
Sbjct: 241 GRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVE----KGRMIFEDIRSYGFLPD 296

Query: 455 KFTFNRVLNGLLLIGN 470
             +++ +++GL   G 
Sbjct: 297 VRSYSILIHGLTKAGQ 312



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 129/263 (49%), Gaps = 4/263 (1%)

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
           A +   E+  +GL P+  +Y  ++    +AG++ EA   F +M+  +       Y T++ 
Sbjct: 2   AWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIM 61

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
           G+G  G  + A  + + +   G +PSV ++N+++  L KK  V+ A+ +FE M  K   P
Sbjct: 62  GYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVM-KKDAEP 120

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           NS+TYN++I  LC  G +E A   +  M+     PN+ T NI++   C A ++E   ++F
Sbjct: 121 NSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIF 180

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           E      C P+  TY  LI  +  + + D+   A +L  +M+D G       +  ++   
Sbjct: 181 ESASQRGCNPDCVTYCSLIDGLGKKGQVDE---AYRLFEKMLDAGHNANPVVYTSLIRNF 237

Query: 466 LLIGNQGLAKEILRLQSRCGRLP 488
            + G +    +I +   R G  P
Sbjct: 238 FIHGRKEDGHKIFKELIRRGCKP 260



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 131/298 (43%), Gaps = 5/298 (1%)

Query: 192 AYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250
           A+  F   + +  K D +SY  +    C   R  +A E+  +M      P    YN ++ 
Sbjct: 2   AWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIM 61

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
           GY  AG+ E+A++    +++R C   VV++ +I+   G   ++  A ++F+ M      P
Sbjct: 62  GYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAE-P 120

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           + +TYN +I +LC    VE A  + +EM      PN  T N+++  LC   ++E A +  
Sbjct: 121 NSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIF 180

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
                  C P+  TY  LI      G+++    LFEKM       N   Y  LI + F+ 
Sbjct: 181 ESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIH 240

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            + +D     K+  E++ RG  P     N  ++ +   G     + I       G LP
Sbjct: 241 GRKED---GHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLP 295



 Score = 38.5 bits (88), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 25/128 (19%), Positives = 55/128 (42%), Gaps = 4/128 (3%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  +D   +  +          MK +   P   T++I+        K ++A   +  M
Sbjct: 439 TWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDM 498

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFK-ADVISYNVIANGWCLVKRT 223
            + G   ++ ++ T++  L K   +  AY+LF+ F+      D  S+N +  G   +   
Sbjct: 499 QKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEG---MSNA 555

Query: 224 NKALEVLK 231
           N+A+E  +
Sbjct: 556 NRAMEAYQ 563


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 99/392 (25%), Positives = 194/392 (49%), Gaps = 6/392 (1%)

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           +  S ++  + +D   +  +  + + LV+++K   + P+   +  +       GK D A 
Sbjct: 316 FVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAE 375

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGW 217
            +F +M   G   +  +++ ++D  CK  K++ A + L K+     KA V  Y+ + +G 
Sbjct: 376 SLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGH 435

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
           C + +   A  +  EM+  GL PN+  Y  ++ GY + G++  A+R + EM  +    + 
Sbjct: 436 CKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNT 495

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
            T+T ++ G      +  A  +F  MV   V+P+  TYN +I+  CK+ +   A  + +E
Sbjct: 496 YTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDE 555

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           MV KG +P++ TY  +I GLC TG +  A EF+  ++ ++ + N   ++ L+  +C  G 
Sbjct: 556 MVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGR 615

Query: 398 IERGLELFEKM-GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
           ++  L+   +M G GV + +L  Y++LI  +  ++    ++    LL +M D+G  P   
Sbjct: 616 LDDALDACREMLGRGVAM-DLVCYSVLIYGILRQQDRRSII---DLLKQMHDQGLRPDNV 671

Query: 457 TFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            +  +++     GN  +A  +  +    G LP
Sbjct: 672 LYTTMIDANAKAGNLKMAFGLWDIMVSEGCLP 703



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 139/265 (52%), Gaps = 1/265 (0%)

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKR 222
           M E G   S  + + ++D L K+  +  A++L  KV +      +  YN + N  C   +
Sbjct: 311 MIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGK 370

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
            ++A  +   M  +GL PN  TY+I++  + + G+++ A  F  +M +   +  V  Y++
Sbjct: 371 LDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSS 430

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++ G   +G+++ A+++FD M+  G+ P+V  Y ++I   CK+  + NA  ++ EM GKG
Sbjct: 431 LISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKG 490

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
             PN+ T+  +I GLCH   M  A +  G M +    PN  TYN+LI   C  G   R  
Sbjct: 491 ISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAF 550

Query: 403 ELFEKMGSGVCLPNLDTYNILISSM 427
           EL ++M     +P+  TY  LIS +
Sbjct: 551 ELLDEMVEKGLVPDTYTYRPLISGL 575



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/400 (24%), Positives = 171/400 (42%), Gaps = 39/400 (9%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           R+R +R    L   + S  L P    +  +           RA ++   M   GC  S+ 
Sbjct: 192 RIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVA 251

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           ++N  +  LCK ++V +A  +  +   K  +ADV +Y  +  G C V+      E++ EM
Sbjct: 252 TYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEM 311

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
           ++ G  P+    + ++ G  + G I  A+    ++KK      +  Y  +++     G++
Sbjct: 312 IEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKL 371

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI--------------------- 332
             A ++F+ M + G+ P+  TY+ +I   CK+  ++ A+                     
Sbjct: 372 DEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSL 431

Query: 333 --------------LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
                          +F+EM+  G  PN   Y  +I G C  GE+  A      M     
Sbjct: 432 ISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGI 491

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
            PN  T+  LI   C A  +    +LF +M     +PN  TYN+LI       K  + + 
Sbjct: 492 SPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEG---HCKEGNTVR 548

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
           A +LL EMV++G +P  +T+  +++GL   G    A+E +
Sbjct: 549 AFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFM 588



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 114/450 (25%), Positives = 194/450 (43%), Gaps = 56/450 (12%)

Query: 69  PQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHR 128
           P  V++++ +  + +  AL FFN L  H  + HS +SF   I    +   Y    +L+  
Sbjct: 59  PHHVEKVLIQTLDDSRLALRFFNFLGLHKNFDHSTTSFCILIHALVQSNLYWPASSLLQT 118

Query: 129 MKSLSLGP-----------------TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ 171
           +    L P                 T   F ++ + YV   +    + +   M + G   
Sbjct: 119 LLLRGLNPEGLFESFLDSYRKCNFSTTLGFDLLIQTYVQNRRELDGLVVVRLMMDCGILP 178

Query: 172 SLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVL 230
            + + + +L+ L + ++   A +LF ++     + DV  Y  +    C +K   +A EV+
Sbjct: 179 QIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVI 238

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG---- 286
             M   G + ++ TYN+ ++G  +  ++ EA      +  +    DV TY T+V G    
Sbjct: 239 GRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKV 298

Query: 287 ---------------FGVVGEIKRARNVFDG------------MVNG----GVLPSVATY 315
                          FG V       N+ DG            +VN     GV PS+  Y
Sbjct: 299 EEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVY 358

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           NA+I  +CK   ++ A  +F  M  KG  PN  TY+++I   C  G+++ AL F+G+M +
Sbjct: 359 NALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTE 418

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
              +  V  Y+ LI   C  G++     LF++M +    PN+  Y  LIS      K  +
Sbjct: 419 VGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYC---KEGE 475

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           L  A +L  EM  +G  P  +TF  +++GL
Sbjct: 476 LHNAFRLYHEMTGKGISPNTYTFTALISGL 505



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 103/428 (24%), Positives = 184/428 (42%), Gaps = 43/428 (10%)

Query: 71  LVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMK 130
           L+D   KR       ALHF   ++     A +   +   I    +L   R   +L   M 
Sbjct: 396 LIDSFCKR--GKLDVALHFLGKMTEVGIKA-TVYPYSSLISGHCKLGKLRAAKSLFDEMI 452

Query: 131 SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190
           +  L P    +  +   Y   G+   A +++  M   G   +  +F  ++  LC   ++ 
Sbjct: 453 ANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMA 512

Query: 191 KAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL 249
           +A  LF ++       + ++YNV+  G C    T +A E+L EMV++GL P+  TY  ++
Sbjct: 513 EANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLI 572

Query: 250 KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA------------- 296
            G    G++ EA  F  +++  + +++ + ++ ++HG+   G +  A             
Sbjct: 573 SGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVA 632

Query: 297 -------------------RNVFD---GMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
                              R++ D    M + G+ P    Y  MI    K  +++ A  +
Sbjct: 633 MDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGL 692

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
           ++ MV +G +PN  TY  +I GLC  G M++A      M      PN  TY   + Y   
Sbjct: 693 WDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTS 752

Query: 395 AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
            G IE+ ++L + +  G  L N  TYNILI       K   +  A ++L+ M+D G  P 
Sbjct: 753 EGNIEKAIQLHDVLLEGF-LANTVTYNILIRGFC---KLGRIQEAAEVLVNMIDSGISPD 808

Query: 455 KFTFNRVL 462
             +++ ++
Sbjct: 809 CISYSTII 816



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 117/237 (49%), Gaps = 2/237 (0%)

Query: 158 VKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANG 216
           + +   MH+ G R     + T++D   K   ++ A+ L+ +   +    +V++Y  + NG
Sbjct: 655 IDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALING 714

Query: 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID 276
            C +   +KA  + +EM+     PN  TY   L      G IE+A +   ++       +
Sbjct: 715 LCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLH-DVLLEGFLAN 773

Query: 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE 336
            VTY  ++ GF  +G I+ A  V   M++ G+ P   +Y+ +I   C++  ++ AI ++E
Sbjct: 774 TVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWE 833

Query: 337 EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
            M+ +G  P++  YN +I G C TGE+ +A E    M     +PN  TYN LI   C
Sbjct: 834 SMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTC 890



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 109/221 (49%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID  A+  + +  + L   M S    P   T+  +       G  D+A  +   M     
Sbjct: 677 IDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNS 736

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEV 229
             + N++   LD L  E  +EKA  L  V    F A+ ++YN++  G+C + R  +A EV
Sbjct: 737 LPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEV 796

Query: 230 LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289
           L  M+D G++P+  +Y+ ++  Y R G ++EA + +  M  R    D V Y  +++G  V
Sbjct: 797 LVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCV 856

Query: 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
            GE+ +A  + D M+  GV P+ ATYN++I   C   SV +
Sbjct: 857 TGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCLMSSVSS 897



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 157/362 (43%), Gaps = 43/362 (11%)

Query: 103 PSSFDHAIDLAARLRDYRTV--WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P+   + + +    ++  TV  + L+  M    L P   T+  +     S G+   A + 
Sbjct: 528 PNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREF 587

Query: 161 FLSMHEHGCRQSLNS--FNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGW 217
              +   G +Q LN   F+ +L   CKE +++ A +  +   G+  A D++ Y+V+  G 
Sbjct: 588 MNDLQ--GEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGI 645

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
              +     +++LK+M D+GL P+   Y  ++    +AG ++ A+  +  M    C  +V
Sbjct: 646 LRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNV 705

Query: 278 VTYTTIVHGFGVVG-----------------------------------EIKRARNVFDG 302
           VTYT +++G   +G                                    I++A  + D 
Sbjct: 706 VTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDV 765

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           ++ G  L +  TYN +I+  CK   ++ A  V   M+  G  P+  +Y+ +I   C  G+
Sbjct: 766 LLEG-FLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGD 824

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           ++ A++    M +    P+   YN LI   C  GE+ +  EL + M      PN  TYN 
Sbjct: 825 LKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNS 884

Query: 423 LI 424
           LI
Sbjct: 885 LI 886



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 137/323 (42%), Gaps = 42/323 (13%)

Query: 195 LFKVFRGKFK----ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250
           LF+ F   ++    +  + ++++   +   +R    L V++ M+D G+ P + T + VL 
Sbjct: 129 LFESFLDSYRKCNFSTTLGFDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLN 188

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
           G  R  Q   A   F E+       DV  YT +V     + +  RAR V   M + G   
Sbjct: 189 GLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDL 248

Query: 311 SVATYNAMIQVLCKKDSVENAILV----------------------------FE------ 336
           SVATYN  I+ LCK   V  A+ +                            FE      
Sbjct: 249 SVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMM 308

Query: 337 -EMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
            EM+  G++P+    + ++ GL   G +  A + V ++K     P++  YN LI   C  
Sbjct: 309 NEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKD 368

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
           G+++    LF  MG     PN  TY+ILI S   R K D   VA   L +M + G     
Sbjct: 369 GKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLD---VALHFLGKMTEVGIKATV 425

Query: 456 FTFNRVLNGLLLIGNQGLAKEIL 478
           + ++ +++G   +G    AK + 
Sbjct: 426 YPYSSLISGHCKLGKLRAAKSLF 448



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 95/189 (50%), Gaps = 3/189 (1%)

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M++ G+LP + T + ++  L +      A+ +F+E+V  G  P+   Y  V+R LC   +
Sbjct: 171 MMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKD 230

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
             RA E +GRM+   C+ +V TYN+ IR  C    +   +E+   +       ++ TY  
Sbjct: 231 FIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCT 290

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           L+  +    K ++     +++ EM++ GF+P +   + +++GL   GN G A +++    
Sbjct: 291 LVLGLC---KVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVK 347

Query: 483 RCGRLPRQF 491
           + G  P  F
Sbjct: 348 KFGVAPSLF 356


>gi|255561437|ref|XP_002521729.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539120|gb|EEF40716.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 629

 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 183/387 (47%), Gaps = 7/387 (1%)

Query: 81  NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRM-KSLSLGPTQK 139
           N A KAL  F   S  P + HS S++   I        + TV+ L+  M  ++   P ++
Sbjct: 50  NSATKALQTFKWASNLPKFTHSQSTYRALIQKLCAFHRFDTVYQLLDEMPHAIGSPPDEE 109

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK-EKKVEKAYNLFKV 198
            F  +      A      +K+   + + G   SL  FN+ILD+L K +  V + +   ++
Sbjct: 110 IFLTVIRGLGRARMIPHVIKVLDLISKFGKNPSLKIFNSILDVLVKVDIDVAREFYRKQM 169

Query: 199 FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
                + D  ++ ++  G CL  R      +L+ M  RG+ PN   YN +L    + G++
Sbjct: 170 MGSGVQGDDYTFAILMKGLCLTNRIGDGFRLLQVMKSRGVKPNAVVYNTLLHALCKNGKV 229

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
             A     E++    E + VT+  ++  +     + +A  + +   + G +P V T   +
Sbjct: 230 GRARSLMDEIE----EPNDVTFNVLIAAYCKEENLVQALVLLEKSFSLGFVPDVVTMTKV 285

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           +++LC    V  A+ + E +  KG + +   YN ++RG C  G+++ A  F+  M+   C
Sbjct: 286 VEILCNAGRVTEAVEMLERVEYKGGLVDVVAYNTLLRGFCRLGKIKVAHRFLKEMERKGC 345

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
            PNV+TYNILI  FCD+G  +  L++F  M +     N DTY+ LI  +F   + ++ L 
Sbjct: 346 LPNVETYNILISGFCDSGMFDMALDMFNDMKTDGISWNFDTYDTLIKGLFFGGRIEEGLK 405

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGL 465
             +L+ E    G   R   +N VL GL
Sbjct: 406 ILELM-EESKGGSGGRISPYNSVLYGL 431



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/393 (25%), Positives = 184/393 (46%), Gaps = 28/393 (7%)

Query: 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLG--PTQKTFAIIAERYVSAGKADRAV 158
             P+     + +AA  ++   V  LV   KS SLG  P   T   + E   +AG+   AV
Sbjct: 240 EEPNDVTFNVLIAAYCKEENLVQALVLLEKSFSLGFVPDVVTMTKVVEILCNAGRVTEAV 299

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGW 217
           ++   +   G    + ++NT+L   C+  K++ A+   K   R     +V +YN++ +G+
Sbjct: 300 EMLERVEYKGGLVDVVAYNTLLRGFCRLGKIKVAHRFLKEMERKGCLPNVETYNILISGF 359

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF--LEMKKRKCEI 275
           C     + AL++  +M   G++ N  TY+ ++KG F  G+IEE  +    +E  K     
Sbjct: 360 CDSGMFDMALDMFNDMKTDGISWNFDTYDTLIKGLFFGGRIEEGLKILELMEESKGGSGG 419

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDG-----MVNGGVLPSVATYNAMIQVLCKKDSVEN 330
            +  Y ++++G          +N++D      M    + P     +  I   C+K +V+N
Sbjct: 420 RISPYNSVLYGL-------YKKNMWDEALEFLMKMEKLFPRAVDRSLRILGFCEKGAVKN 472

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           A +VF++M+ +G  PN   Y+ ++ G C  G +  A E +  M           +N LI 
Sbjct: 473 AKMVFDQMINEGGTPNILVYDCLVHGFCQEGNLREAFELMNEMVGHGYFLVASGFNALIH 532

Query: 391 YFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450
            FC  G+ E  L+L + M    C+P+  TY+ LI ++    +  +   A  +  +M+++G
Sbjct: 533 GFCGQGKDESALKLLDDMVGRGCVPDRGTYSPLIDALC---RKGNFQKALSIFNQMIEKG 589

Query: 451 FMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
             P   T+N +L          L+KEI+ L+++
Sbjct: 590 ITPDSSTWNSLL--------IRLSKEIIWLENK 614


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 108/379 (28%), Positives = 175/379 (46%), Gaps = 53/379 (13%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   TF  +       G+   AV +   M E+G +    ++ T +D +CK      A NL
Sbjct: 180 PDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNL 239

Query: 196 FKVFR--GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
            +        K +V+ Y+ I +G C   R + +  +  EM D+G+ PN+ TYN ++ G+ 
Sbjct: 240 LRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFC 299

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
            +G+   A R   EM +RK   +VVTY  +++ F   G+   A  ++D M+  G++P+  
Sbjct: 300 ISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTI 359

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMP---------------------------- 345
           TYN+MI   CK+D ++ A  +F  M  KG  P                            
Sbjct: 360 TYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEM 419

Query: 346 -------NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
                  N+ TYN +I G C  G++  AL+   +M      P++ T N L+   CD G++
Sbjct: 420 PRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKL 479

Query: 399 ERGLELFEKMG------------SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
           +  LE+F+ M             +GV  P++ TYNILI  +    K    L A +L  EM
Sbjct: 480 KDALEMFKAMQKSKMDLDASHPFNGV-EPDVLTYNILICGLINEGK---FLEAEELYEEM 535

Query: 447 VDRGFMPRKFTFNRVLNGL 465
             RG +P   T++ +++GL
Sbjct: 536 PHRGIVPDTITYSSMIDGL 554



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/389 (27%), Positives = 179/389 (46%), Gaps = 9/389 (2%)

Query: 103 PSSFDHAIDLAARLRDYR--TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           PS  D    + A +R  R   V +L  +M+   +     +F I+ + + S  K   A+  
Sbjct: 79  PSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALST 138

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV 220
           F  + + G    + +F T+L  LC + +V +A +LF       + DV+++  + NG C  
Sbjct: 139 FGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI---CRPDVLTFTTLMNGLCRE 195

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK-RKCEIDVVT 279
            R  +A+ +L  MV+ GL P+  TY   + G  + G    A     +M++    + +VV 
Sbjct: 196 GRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVI 255

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y+ I+ G    G    + N+F  M + G+ P++ TYN MI   C       A  + +EM+
Sbjct: 256 YSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEML 315

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            +   PN  TYN +I      G+   A E    M      PN  TYN +I  FC    ++
Sbjct: 316 ERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLD 375

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
              ++F  M +  C P++ T+  LI      K+ DD +   +LL EM  RG +    T+N
Sbjct: 376 AAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGM---ELLHEMPRRGLVANTVTYN 432

Query: 460 RVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            +++G  L+G+   A ++ +     G  P
Sbjct: 433 TLIHGFCLVGDLNAALDLSQQMISSGVCP 461



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 176/374 (47%), Gaps = 17/374 (4%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
            M+   + P   T+  +   +  +G+   A ++   M E     ++ ++N +++   KE 
Sbjct: 278 EMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEG 337

Query: 188 KVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
           K  +A  L+     RG    + I+YN + +G+C   R + A ++   M  +G +P++ T+
Sbjct: 338 KFFEAAELYDEMLPRGII-PNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTF 396

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
             ++ GY  A +I++      EM +R    + VTY T++HGF +VG++  A ++   M++
Sbjct: 397 TTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMIS 456

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK-----------GYMPNSTTYNVVI 354
            GV P + T N ++  LC    +++A+ +F+ M              G  P+  TYN++I
Sbjct: 457 SGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILI 516

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
            GL + G+   A E    M      P+  TY+ +I   C    ++   ++F  MGS    
Sbjct: 517 CGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFS 576

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           PN+ T+N LI+      + DD L   +L  EM  RG +     +  ++ G   +GN   A
Sbjct: 577 PNVVTFNTLINGYCKAGRVDDGL---ELFCEMGRRGIVADAIIYITLIYGFRKVGNINGA 633

Query: 475 KEILRLQSRCGRLP 488
            +I +     G  P
Sbjct: 634 LDIFQEMISSGVYP 647



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 162/339 (47%), Gaps = 9/339 (2%)

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVI 213
           + A+ +F  M       S+  FN ++  + + ++ +   +L+ K+ R + + D+ S+ ++
Sbjct: 63  EDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTIL 122

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
              +C   +   AL    ++   GL+P++ T+  +L G     ++ EA   F ++    C
Sbjct: 123 IKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI----C 178

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
             DV+T+TT+++G    G +  A  + D MV  G+ P   TY   +  +CK     +A+ 
Sbjct: 179 RPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALN 238

Query: 334 VFEEMVGKGYM-PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
           +  +M    ++ PN   Y+ +I GLC  G    +      M+D    PN+ TYN +I  F
Sbjct: 239 LLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGF 298

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
           C +G       L ++M      PN+ TYN LI++ FV++       A +L  EM+ RG +
Sbjct: 299 CISGRWSAAQRLLQEMLERKISPNVVTYNALINA-FVKEGK--FFEAAELYDEMLPRGII 355

Query: 453 PRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           P   T+N +++G         A+++  L +  G  P  F
Sbjct: 356 PNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVF 394



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 134/320 (41%), Gaps = 47/320 (14%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+  + + +    + D A  +F  M   GC   + +F T++D  C  K+++    L
Sbjct: 356 PNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMEL 415

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD------------------- 235
             ++ R    A+ ++YN + +G+CLV   N AL++ ++M+                    
Sbjct: 416 LHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCD 475

Query: 236 ---------------------------RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
                                       G+ P++ TYNI++ G    G+  EA   + EM
Sbjct: 476 NGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEM 535

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
             R    D +TY++++ G      +  A  +F  M +    P+V T+N +I   CK   V
Sbjct: 536 PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRV 595

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           ++ + +F EM  +G + ++  Y  +I G    G +  AL+    M      P+  T   +
Sbjct: 596 DDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNM 655

Query: 389 IRYFCDAGEIERGLELFEKM 408
           +  F    E+ER + + E +
Sbjct: 656 LTGFWSKEELERAVAMLEDL 675



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 113/234 (48%), Gaps = 14/234 (5%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE----------- 166
           D      L  +M S  + P   T   + +     GK   A+++F +M +           
Sbjct: 443 DLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPF 502

Query: 167 HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKRTN 224
           +G    + ++N ++  L  E K  +A  L++    RG    D I+Y+ + +G C   R +
Sbjct: 503 NGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRG-IVPDTITYSSMIDGLCKQSRLD 561

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           +A ++   M  +  +PN+ T+N ++ GY +AG++++    F EM +R    D + Y T++
Sbjct: 562 EATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLI 621

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           +GF  VG I  A ++F  M++ GV P   T   M+     K+ +E A+ + E++
Sbjct: 622 YGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDL 675



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 120/255 (47%), Gaps = 12/255 (4%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+H M    L     T+  +   +   G  + A+ +   M   G    + + NT+LD LC
Sbjct: 415 LLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLC 474

Query: 185 KEKKVEKAYNLFKVFR------------GKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
              K++ A  +FK  +               + DV++YN++  G     +  +A E+ +E
Sbjct: 475 DNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEE 534

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M  RG+ P+  TY+ ++ G  +  +++EA + F+ M  +    +VVT+ T+++G+   G 
Sbjct: 535 MPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGR 594

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           +     +F  M   G++     Y  +I    K  ++  A+ +F+EM+  G  P++ T   
Sbjct: 595 VDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRN 654

Query: 353 VIRGLCHTGEMERAL 367
           ++ G     E+ERA+
Sbjct: 655 MLTGFWSKEELERAV 669



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 121/261 (46%), Gaps = 8/261 (3%)

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
           +K    A+++  +M+     P++  +N ++    R  + +     + +M++++   D+ +
Sbjct: 59  IKGLEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYS 118

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           +T ++  F    ++  A + F  +   G+ P V T+  ++  LC    V  A+ +F ++ 
Sbjct: 119 FTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQIC 178

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
                P+  T+  ++ GLC  G +  A+  + RM ++  +P+  TY   +   C  G+  
Sbjct: 179 ----RPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTV 234

Query: 400 RGLELFEKMGSGVCL-PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
             L L  KM     + PN+  Y+ +I  +    +  D   +  L IEM D+G  P   T+
Sbjct: 235 SALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSD---SHNLFIEMQDKGIFPNIVTY 291

Query: 459 NRVLNGLLLIGNQGLAKEILR 479
           N ++ G  + G    A+ +L+
Sbjct: 292 NCMIGGFCISGRWSAAQRLLQ 312


>gi|255578729|ref|XP_002530223.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530270|gb|EEF32170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 120/459 (26%), Positives = 208/459 (45%), Gaps = 28/459 (6%)

Query: 39  DPAALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPT 98
           D   +A   L  +D + LT      S H TP  V  I+ ++    + +L FFN +     
Sbjct: 33  DFVNVAHSHLIHSDWKKLTSL----STHLTPFRVKHILLKIQKDHVLSLEFFNWVQTENP 88

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRM--KSLSLGPTQKTFAIIAERYVSAGKADR 156
            +H+  +    + +  + R +++   ++  +  K     P  K F  I   Y     + R
Sbjct: 89  SSHTLETHSMILHILTKNRKFKSAELILKSVLVKGFIDLP-DKLFEAILYSYRMCDSSPR 147

Query: 157 -----------------AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
                            A   FL M  +G   ++ S N  L  L    +V+ A   +K  
Sbjct: 148 VFDSLFKTLAHMKKFRNATDTFLQMKGYGFLPTVESCNAYLSSLLDLHRVDIALAFYKEM 207

Query: 200 R-GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
           R  +   +V + N++   +C   +  KA++V +EM   G++PN T+YN ++ GY R G +
Sbjct: 208 RRCRISPNVYTRNMVMRAFCKSGKLEKAVQVFEEMESVGISPNDTSYNTLIMGYCRKGLL 267

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
             A +    M+ +  E +VVT+ +++ GF   G++  A  VF  M    V P+  TYN +
Sbjct: 268 NSAVKLKNSMRAKGVEANVVTFNSLIDGFCKEGKLHEASKVFSEMKVLNVAPNTITYNTL 327

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           I    +  + E    ++EEM   G   +  TYN +I GLC  G+ ++A   V  +  +  
Sbjct: 328 INGHSQMGNSEMGRRLYEEMSRNGVKADILTYNALILGLCKEGKTKKAAYMVKELDKENL 387

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
            PN  T++ LI   C     +R  +L++ M    C PN  T+N+L+S+     K++D   
Sbjct: 388 VPNASTFSALISGQCIRNNSDRAFQLYKSMVRIGCHPNEQTFNMLVSAFC---KNEDFEG 444

Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
           A  +L+EM +R F P     + + +GL   G + LA ++
Sbjct: 445 AFLVLMEMFERCFTPGSDVLSEIYHGLCCCGKEHLAMKL 483



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 118/248 (47%), Gaps = 1/248 (0%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
            M+S+ + P   ++  +   Y   G  + AVK+  SM   G   ++ +FN+++D  CKE 
Sbjct: 241 EMESVGISPNDTSYNTLIMGYCRKGLLNSAVKLKNSMRAKGVEANVVTFNSLIDGFCKEG 300

Query: 188 KVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
           K+ +A  +F   +      + I+YN + NG   +  +     + +EM   G+  ++ TYN
Sbjct: 301 KLHEASKVFSEMKVLNVAPNTITYNTLINGHSQMGNSEMGRRLYEEMSRNGVKADILTYN 360

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
            ++ G  + G+ ++A     E+ K     +  T++ ++ G  +     RA  ++  MV  
Sbjct: 361 ALILGLCKEGKTKKAAYMVKELDKENLVPNASTFSALISGQCIRNNSDRAFQLYKSMVRI 420

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G  P+  T+N ++   CK +  E A LV  EM  + + P S   + +  GLC  G+   A
Sbjct: 421 GCHPNEQTFNMLVSAFCKNEDFEGAFLVLMEMFERCFTPGSDVLSEIYHGLCCCGKEHLA 480

Query: 367 LEFVGRMK 374
           ++    +K
Sbjct: 481 MKLSSELK 488



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 110/249 (44%), Gaps = 5/249 (2%)

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEM--KKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           N    +  ++LK     G I+   + F  +    R C+     + ++      + + + A
Sbjct: 106 NRKFKSAELILKSVLVKGFIDLPDKLFEAILYSYRMCDSSPRVFDSLFKTLAHMKKFRNA 165

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
            + F  M   G LP+V + NA +  L     V+ A+  ++EM      PN  T N+V+R 
Sbjct: 166 TDTFLQMKGYGFLPTVESCNAYLSSLLDLHRVDIALAFYKEMRRCRISPNVYTRNMVMRA 225

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
            C +G++E+A++    M+     PN  +YN LI  +C  G +   ++L   M +     N
Sbjct: 226 FCKSGKLEKAVQVFEEMESVGISPNDTSYNTLIMGYCRKGLLNSAVKLKNSMRAKGVEAN 285

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKE 476
           + T+N LI       K   L  A K+  EM      P   T+N ++NG   +GN  + + 
Sbjct: 286 VVTFNSLIDGFC---KEGKLHEASKVFSEMKVLNVAPNTITYNTLINGHSQMGNSEMGRR 342

Query: 477 ILRLQSRCG 485
           +    SR G
Sbjct: 343 LYEEMSRNG 351


>gi|242047668|ref|XP_002461580.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
 gi|241924957|gb|EER98101.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
          Length = 532

 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 116/431 (26%), Positives = 190/431 (44%), Gaps = 76/431 (17%)

Query: 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG--C 169
           L A  R    +  ++     L   P   ++ ++ +      K + AV +   M E G  C
Sbjct: 58  LCAEKRTSDAMNIVIRWTPKLGCTPDVFSYTVLLKGLCDEKKCEEAVDLIHMMAEDGDHC 117

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
             ++ S+ T++    KE +V KAY LF ++       DV++ N I +G C V+  +KA E
Sbjct: 118 PPNVVSYTTVIHGFFKEDEVGKAYTLFCEMLDRGIPPDVVTCNSIIDGLCKVQAMDKAEE 177

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK---------------C 273
           VL++M D+ + P+ TTYN ++ GY  +GQ++EA R   +M +                 C
Sbjct: 178 VLRQMFDKHIMPDCTTYNSLVHGYLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLIDCLC 237

Query: 274 EI--------------------DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
           +                     +V TY  ++HG+   G++    N+ D MV  GV P   
Sbjct: 238 KFGGHTEAREILNSMIQSRGNPNVATYGGLLHGYATKGDLVEMNNLIDLMVQNGVRPDHH 297

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
            +N  I    K   ++ A+L F +M  +G MP+  +Y  +I GLC  G ++ A+    +M
Sbjct: 298 IFNIQIYAYVKCGRLDEAMLTFNKMRQQGLMPDIISYGTMIDGLCKIGRLDAAMSQFCQM 357

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELF-EKMGSGV-------------------- 412
            DD   P++  +  LI  F   G+ E+  ELF E M  G+                    
Sbjct: 358 IDDGLSPDIVVFTNLIHGFSMYGKWEKAEELFYEMMDRGIRPTVVVFTTMIDKLFKEGKV 417

Query: 413 --------------CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
                           PN+ +YN +I   F+  K D++L   KLL +M+  G  P   TF
Sbjct: 418 TEAKTLFDLMPIASVKPNVVSYNAIIHGYFLAGKLDEVL---KLLDDMLSVGLKPNAVTF 474

Query: 459 NRVLNGLLLIG 469
           N +L+ +L +G
Sbjct: 475 NTLLDDMLSMG 485



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 160/346 (46%), Gaps = 7/346 (2%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           R  S  + PT  T+ I+       G  + A      + + G R +  SF  IL  LC EK
Sbjct: 3   RAGSKKVAPTTVTYTILISCCCYVGCLNLAFAALGQIIKTGLRANAISFTPILRTLCAEK 62

Query: 188 KVEKAYNLFKVFRGKFKA--DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN--PNLT 243
           +   A N+   +  K     DV SY V+  G C  K+  +A++++  M + G +  PN+ 
Sbjct: 63  RTSDAMNIVIRWTPKLGCTPDVFSYTVLLKGLCDEKKCEEAVDLIHMMAEDGDHCPPNVV 122

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           +Y  V+ G+F+  ++ +A+  F EM  R    DVVT  +I+ G   V  + +A  V   M
Sbjct: 123 SYTTVIHGFFKEDEVGKAYTLFCEMLDRGIPPDVVTCNSIIDGLCKVQAMDKAEEVLRQM 182

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
            +  ++P   TYN+++        ++ A+ + ++M   G  PN  TY+++I  LC  G  
Sbjct: 183 FDKHIMPDCTTYNSLVHGYLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLIDCLCKFGGH 242

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             A E +  M      PNV TY  L+  +   G++     L + M      P+   +NI 
Sbjct: 243 TEAREILNSMIQSRGNPNVATYGGLLHGYATKGDLVEMNNLIDLMVQNGVRPDHHIFNIQ 302

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
           I +     + D+ ++      +M  +G MP   ++  +++GL  IG
Sbjct: 303 IYAYVKCGRLDEAMLT---FNKMRQQGLMPDIISYGTMIDGLCKIG 345



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 160/352 (45%), Gaps = 1/352 (0%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID   +++       ++ +M    + P   T+  +   Y+S+G+   AV+I   M  HG 
Sbjct: 163 IDGLCKVQAMDKAEEVLRQMFDKHIMPDCTTYNSLVHGYLSSGQLKEAVRILKQMSRHGQ 222

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
             +  +++ ++D LCK     +A  +   + + +   +V +Y  + +G+       +   
Sbjct: 223 PPNGVTYSMLIDCLCKFGGHTEAREILNSMIQSRGNPNVATYGGLLHGYATKGDLVEMNN 282

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           ++  MV  G+ P+   +NI +  Y + G+++EA   F +M+++    D+++Y T++ G  
Sbjct: 283 LIDLMVQNGVRPDHHIFNIQIYAYVKCGRLDEAMLTFNKMRQQGLMPDIISYGTMIDGLC 342

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
            +G +  A + F  M++ G+ P +  +  +I         E A  +F EM+ +G  P   
Sbjct: 343 KIGRLDAAMSQFCQMIDDGLSPDIVVFTNLIHGFSMYGKWEKAEELFYEMMDRGIRPTVV 402

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            +  +I  L   G++  A      M     +PNV +YN +I  +  AG+++  L+L + M
Sbjct: 403 VFTTMIDKLFKEGKVTEAKTLFDLMPIASVKPNVVSYNAIIHGYFLAGKLDEVLKLLDDM 462

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
            S    PN  T+N L+  M       D+     L+    + G +    T  R
Sbjct: 463 LSVGLKPNAVTFNTLLDDMLSMGLKPDVATCNTLIDSCCEDGRIEDVLTLFR 514



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 118/249 (47%), Gaps = 20/249 (8%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M    + P    F I    YV  G+ D A+  F  M + G    + S+ T++D LC
Sbjct: 283 LIDLMVQNGVRPDHHIFNIQIYAYVKCGRLDEAMLTFNKMRQQGLMPDIISYGTMIDGLC 342

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  +++ A + F ++       D++ +  + +G+ +  +  KA E+  EM+DRG+ P + 
Sbjct: 343 KIGRLDAAMSQFCQMIDDGLSPDIVVFTNLIHGFSMYGKWEKAEELFYEMMDRGIRPTVV 402

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA------- 296
            +  ++   F+ G++ EA   F  M     + +VV+Y  I+HG+ + G++          
Sbjct: 403 VFTTMIDKLFKEGKVTEAKTLFDLMPIASVKPNVVSYNAIIHGYFLAGKLDEVLKLLDDM 462

Query: 297 ------------RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
                         + D M++ G+ P VAT N +I   C+   +E+ + +F EM+ K   
Sbjct: 463 LSVGLKPNAVTFNTLLDDMLSMGLKPDVATCNTLIDSCCEDGRIEDVLTLFREMLSKAAK 522

Query: 345 PNSTTYNVV 353
            ++ T N++
Sbjct: 523 TDTVTENII 531



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 103/214 (48%), Gaps = 6/214 (2%)

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
           VTYT ++     VG +  A      ++  G+  +  ++  +++ LC +    +A+ +   
Sbjct: 14  VTYTILISCCCYVGCLNLAFAALGQIIKTGLRANAISFTPILRTLCAEKRTSDAMNIVIR 73

Query: 338 MVGK-GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD--ECEPNVQTYNILIRYFCD 394
              K G  P+  +Y V+++GLC   + E A++ +  M +D   C PNV +Y  +I  F  
Sbjct: 74  WTPKLGCTPDVFSYTVLLKGLCDEKKCEEAVDLIHMMAEDGDHCPPNVVSYTTVIHGFFK 133

Query: 395 AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454
             E+ +   LF +M      P++ T N +I  +   +  D    A ++L +M D+  MP 
Sbjct: 134 EDEVGKAYTLFCEMLDRGIPPDVVTCNSIIDGLCKVQAMDK---AEEVLRQMFDKHIMPD 190

Query: 455 KFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             T+N +++G L  G    A  IL+  SR G+ P
Sbjct: 191 CTTYNSLVHGYLSSGQLKEAVRILKQMSRHGQPP 224



 Score = 43.5 bits (101), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 15/125 (12%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           TL   M   S+ P   ++  I   Y  AGK D  +K+   M   G + +  +FNT+LD  
Sbjct: 422 TLFDLMPIASVKPNVVSYNAIIHGYFLAGKLDEVLKLLDDMLSVGLKPNAVTFNTLLD-- 479

Query: 184 CKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
                         +     K DV + N + +  C   R    L + +EM+ +    +  
Sbjct: 480 -------------DMLSMGLKPDVATCNTLIDSCCEDGRIEDVLTLFREMLSKAAKTDTV 526

Query: 244 TYNIV 248
           T NI+
Sbjct: 527 TENII 531


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 113/415 (27%), Positives = 190/415 (45%), Gaps = 60/415 (14%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           +   + ++  M S    P   T++ +     +A K ++A ++F  M  +G    + ++ T
Sbjct: 103 FEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTT 162

Query: 179 ILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           +LD  CK   +E+A N F   +    A +V++Y  + + +   ++ ++A E+ + M+  G
Sbjct: 163 LLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNG 222

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI-----------------DVVTY 280
             PN+ TY  ++ G+ +AG+ E+A + +  MK  K +I                 +VVTY
Sbjct: 223 CVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTY 282

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
             +V G     ++K AR++ + M   G  P+   Y+A+I   CK   ++ A  VF +M+G
Sbjct: 283 GALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLG 342

Query: 341 KGYMPNSTTY------------------------------NVVI-----RGLCHTGEMER 365
            G  PN  TY                              NVVI      GLC  G+ + 
Sbjct: 343 HGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDE 402

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           A   +  M++  C PNV TY  +I  F  AG ++R LEL + M S  C PN  TY +LI+
Sbjct: 403 AYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLIN 462

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF-TFNRVLNGLL--LIGNQGLAKEI 477
                   DD   A KLL EM  + + P+    + +V+ G     + + GL  E+
Sbjct: 463 HCCAAGLLDD---AHKLLEEM-KQTYWPKHIGMYRKVIEGFSHEFVASLGLLAEL 513



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 113/415 (27%), Positives = 184/415 (44%), Gaps = 68/415 (16%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV------ 189
           P+   F  +   Y  +G    A K+   M   G +     +N ++  +C  + +      
Sbjct: 9   PSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTEDLPSMEVI 68

Query: 190 ---EKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
              E+AYN + ++     K +V ++       C + +  KA  V++EM+ +G  P+ +TY
Sbjct: 69  GLAERAYNEMLEMGVVLNKVNVCNFT---RCLCCIGKFEKAYNVIREMMSKGFIPDSSTY 125

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           + V+     A ++E+A++ F EMK+     DV TYTT++  F  VG I++ARN FD M  
Sbjct: 126 SKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQ 185

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G  P+V TY A+I    K   +  A  +FE M+  G +PN  TY  +I G C  GE E+
Sbjct: 186 DGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEK 245

Query: 366 ALEFVGRMKDDE------------------------------------------------ 377
           A +   RMK+D+                                                
Sbjct: 246 ACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETM 305

Query: 378 ----CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
               CEPN   Y+ LI  FC  G+++   E+F KM    C PN+ TY+ LI  +F  K+ 
Sbjct: 306 SLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRL 365

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           D   +A K+L +M++    P    +  +++GL  +G    A  ++ +    G  P
Sbjct: 366 D---LALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYP 417



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 162/335 (48%), Gaps = 7/335 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+  + +    A K   A  +  +M   GC  +   ++ ++D  CK  K+++A  +
Sbjct: 277 PNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEV 336

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F K+       +V +Y+ + +     KR + AL+VL +M++    PN+  Y  ++ G  +
Sbjct: 337 FTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCK 396

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G+ +EA+R  L M+++ C  +VVTYT ++ GFG  G + R   +   M + G  P+  T
Sbjct: 397 VGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFIT 456

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           Y  +I   C    +++A  + EEM    +  +   Y  VI G  H  E   +L  +  + 
Sbjct: 457 YRVLINHCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGFSH--EFVASLGLLAELS 514

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
           +D   P +  Y +LI  F  AG +E  LEL E++ S       +TY  LI S+ +  K D
Sbjct: 515 EDGSVPILPVYKLLIDNFIKAGRLEMALELHEELSS-FSAAYQNTYVSLIESLTLACKVD 573

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
               A KL  +M  RGF+P       ++ GLL +G
Sbjct: 574 K---AFKLYSDMTRRGFVPELSMLVCLIKGLLRVG 605



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 137/311 (44%), Gaps = 37/311 (11%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           +D  ID   ++        +  +M      P   T++ + ++     + D A+K+   M 
Sbjct: 317 YDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKML 376

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTN 224
           E+ C  ++  +  ++D LCK  K ++AY L  +   K    +V++Y  + +G+    R +
Sbjct: 377 ENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVD 436

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           + LE+L+ M  +G  PN  TY +++     AG +++A +   EMK+      +  Y  ++
Sbjct: 437 RCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVI 496

Query: 285 HGF--------GVVGEIKRARNV---------FDGMVNGGVLP------------SVA-- 313
            GF        G++ E+    +V          D  +  G L             S A  
Sbjct: 497 EGFSHEFVASLGLLAELSEDGSVPILPVYKLLIDNFIKAGRLEMALELHEELSSFSAAYQ 556

Query: 314 -TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            TY ++I+ L     V+ A  ++ +M  +G++P  +    +I+GL   G+ E AL+    
Sbjct: 557 NTYVSLIESLTLACKVDKAFKLYSDMTRRGFVPELSMLVCLIKGLLRVGKWEEALQ---- 612

Query: 373 MKDDECEPNVQ 383
           + D  C+ ++ 
Sbjct: 613 LSDSICQMDIH 623



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 103/251 (41%), Gaps = 44/251 (17%)

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M    C    + + ++VH +   G+   A  +   MV  G  P    YN +I  +C  + 
Sbjct: 2   MITEGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTED 61

Query: 328 V-----------------------------------------ENAILVFEEMVGKGYMPN 346
           +                                         E A  V  EM+ KG++P+
Sbjct: 62  LPSMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPD 121

Query: 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
           S+TY+ VI  LC+  ++E+A +    MK +   P+V TY  L+  FC  G IE+    F+
Sbjct: 122 SSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFD 181

Query: 407 KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
           +M    C PN+ TY  LI +     K+  L  A ++   M+  G +P   T+  +++G  
Sbjct: 182 EMQQDGCAPNVVTYTALIHAYL---KTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHC 238

Query: 467 LIGNQGLAKEI 477
             G    A +I
Sbjct: 239 KAGETEKACQI 249


>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
          Length = 798

 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 113/435 (25%), Positives = 200/435 (45%), Gaps = 12/435 (2%)

Query: 63  PSLHWTPQLV--DQIIKRLW--NHALKALHFFNILSYHPTYAHSPS---SFDHAIDLAAR 115
           P+L  TP     + ++K L   N + +ALH  + +    T    P    S+   I+   R
Sbjct: 159 PALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLLR 218

Query: 116 LRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS 175
                  + L   M    + P   T+  +   Y S+GK   A+ IF  M   G    + +
Sbjct: 219 EGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVT 278

Query: 176 FNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           +NT++  LCK  +  +A  +F  + +   K D   Y  + +G+       +  ++L  MV
Sbjct: 279 YNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMV 338

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
             G  P+   +NI++  Y + G ++EA   F +M+++    ++VTY T++     VG++ 
Sbjct: 339 RNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVD 398

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
            A + FD +++ G+ P+   +  +I  LC  D  + A  +  EM+G+G  PN+  +N ++
Sbjct: 399 DAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLL 458

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414
             LC  G + RA      M   + + +V TY  LI  +C  G+++   +L E M      
Sbjct: 459 NHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVK 518

Query: 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLA 474
           PN  TYN +I+      + +D   A  L  +M  +G  P    ++ +L+GL        A
Sbjct: 519 PNEVTYNTIINGYCKNGRIED---ACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAA 575

Query: 475 KEILRLQSRCG-RLP 488
           KE+     +CG +LP
Sbjct: 576 KELYLWMIKCGIKLP 590



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 148/293 (50%), Gaps = 1/293 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   +D   R+       +   R+ S  L P    F  +     +  K D+A ++ + M
Sbjct: 383 TYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEM 442

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRT 223
              G   +   FNT+L+ LCKE  V +A N+F +  R   + DVI+Y  + +G+CL  + 
Sbjct: 443 IGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKV 502

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           ++A ++L+ MV  G+ PN  TYN ++ GY + G+IE+A   F +M  +     +V Y+TI
Sbjct: 503 DEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTI 562

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +HG      I  A+ ++  M+  G+   + TYN ++Q LC+ +  ++A+ +F  +    +
Sbjct: 563 LHGLFQTRRIAAAKELYLWMIKCGIKLPIGTYNIILQGLCQNNCTDDALRMFHNLCLIDF 622

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396
              + T+N++I  L   G  + A +    +      PNV TY ++++   + G
Sbjct: 623 HLQNRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQG 675



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 150/329 (45%), Gaps = 36/329 (10%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P    F I+   Y   G  D A+  F  M + G   ++ ++ T++D LC+  KV+ A + 
Sbjct: 344 PDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQ 403

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F ++       + + +  + +G C   + +KA E+  EM+ RG+ PN   +N +L    +
Sbjct: 404 FDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLLNHLCK 463

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G +  A   F  M +   + DV+TYTT++ G+ + G++  A  + +GMV  GV P+  T
Sbjct: 464 EGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNEVT 523

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPN----ST---------------------- 348
           YN +I   CK   +E+A  +F +M  KG  P     ST                      
Sbjct: 524 YNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAKELYLWMI 583

Query: 349 ---------TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
                    TYN++++GLC     + AL     +   +     +T+NI+I      G  +
Sbjct: 584 KCGIKLPIGTYNIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTFNIMIDALLKGGRHD 643

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMF 428
              +LF  + +   +PN+ TY +++ S+ 
Sbjct: 644 EAKDLFASLLARGLVPNVVTYWLMMKSLI 672



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/403 (25%), Positives = 168/403 (41%), Gaps = 73/403 (18%)

Query: 154 ADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNV 212
           A  +  + LS+     R  L +++ ++    +   ++ A+  L +V R  + A  I+++ 
Sbjct: 77  ARESPAVALSLFNRMPRADLCTYSIVIGCCSRAGHLDLAFAALGRVIRTGWTAQAITFSP 136

Query: 213 IANGWCLVKRTNKALEV-LKEMVDRGLNPNLTTYNIVLK--------------------- 250
           +  G C  KRT+ A+++ L+ M   G  PN  +YNI+LK                     
Sbjct: 137 LLKGLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMAD 196

Query: 251 ------------------GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
                             G  R GQ+++A+  F EM  +    + +TY  ++HG+   G+
Sbjct: 197 DTRGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGK 256

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
            K A  +F  M   GV P V TYN ++  LCK      A  VF+ MV KG+ P+S+ Y  
Sbjct: 257 PKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGT 316

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           ++ G    G + +  + +  M  +  +P+   +NILI  +   G ++  +  F KM    
Sbjct: 317 LLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQG 376

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLV--------------------------------AG 440
             PN+ TY  ++ ++    K DD +                                 A 
Sbjct: 377 LHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAE 436

Query: 441 KLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           +L +EM+ RG  P    FN +LN L   G    AK I  L  R
Sbjct: 437 ELAVEMIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVR 479



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 100/234 (42%), Gaps = 8/234 (3%)

Query: 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319
           E+    L +  R    D+ TY+ ++      G +  A      ++  G      T++ ++
Sbjct: 79  ESPAVALSLFNRMPRADLCTYSIVIGCCSRAGHLDLAFAALGRVIRTGWTAQAITFSPLL 138

Query: 320 QVLCKKDSVENAI-LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE- 377
           + LC      +A+ +    M   G  PN+ +YN++++GLC     ++AL  +  M  D+ 
Sbjct: 139 KGLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDT 198

Query: 378 ---CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
              C P+V +Y  +I      G++++   LF++M      PN  TYN L+       K  
Sbjct: 199 RGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPK 258

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           + +    +  +M   G  P   T+N ++  L   G    A+++     + G  P
Sbjct: 259 EAI---GIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKP 309



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 80/174 (45%), Gaps = 1/174 (0%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           +L  +M S  + P    ++ I        +   A +++L M + G +  + ++N IL  L
Sbjct: 542 SLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAKELYLWMIKCGIKLPIGTYNIILQGL 601

Query: 184 CKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           C+    + A  +F  +    F     ++N++ +      R ++A ++   ++ RGL PN+
Sbjct: 602 CQNNCTDDALRMFHNLCLIDFHLQNRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNV 661

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
            TY +++K     G +EE    FL ++K  C  D      +V      GE+++A
Sbjct: 662 VTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTADSRMLNALVGKLPQKGEVRKA 715


>gi|15239018|ref|NP_196692.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174149|sp|Q9LFM6.1|PP375_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g11310, mitochondrial; Flags: Precursor
 gi|8953393|emb|CAB96666.1| putative protein [Arabidopsis thaliana]
 gi|110738090|dbj|BAF00978.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004275|gb|AED91658.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 117/484 (24%), Positives = 220/484 (45%), Gaps = 20/484 (4%)

Query: 24  PLTTTSPAPLPPAAADPAALASLILTSTD---PRTLTQTLHCPSLHWTPQLVDQIIKRLW 80
           P +T +P      +    +  S +L +TD     +L   L    +  + +LV  +  RL 
Sbjct: 53  PDSTCTPPQQNTVSKTDLSTISNLLENTDVVPGSSLESALDETGIEPSVELVHALFDRLS 112

Query: 81  NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVH---RMKSLSLGPT 137
           +  +     F      P +  SPS FD  ++   + R++   W+LV    R    S   +
Sbjct: 113 SSPMLLHSVFKWAEMKPGFTLSPSLFDSVVNSLCKAREFEIAWSLVFDRVRSDEGSNLVS 172

Query: 138 QKTFAIIAERYVSAGKADRAVKI--FLSMHEHGCRQS--LNSFNTILDLLCKEKKVEKAY 193
             TF ++  RY  AG   +A++   F   +E  C+ +  L     +LD LCKE  V +A 
Sbjct: 173 ADTFIVLIRRYARAGMVQQAIRAFEFARSYEPVCKSATELRLLEVLLDALCKEGHVREAS 232

Query: 194 NLFKVFRGKFKADVIS----YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL 249
              +   G   ++ +     +N++ NGW   ++  +A ++ +EM    + P + TY  ++
Sbjct: 233 MYLERIGGTMDSNWVPSVRIFNILLNGWFRSRKLKQAEKLWEEMKAMNVKPTVVTYGTLI 292

Query: 250 KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
           +GY R  +++ A     EMK  + EI+ + +  I+ G G  G +  A  + +        
Sbjct: 293 EGYCRMRRVQIAMEVLEEMKMAEMEINFMVFNPIIDGLGEAGRLSEALGMMERFFVCESG 352

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           P++ TYN++++  CK   +  A  + + M+ +G  P +TTYN   +      + E  +  
Sbjct: 353 PTIVTYNSLVKNFCKAGDLPGASKILKMMMTRGVDPTTTTYNHFFKYFSKHNKTEEGMNL 412

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
             ++ +    P+  TY+++++  C+ G++   +++ ++M +    P+L T  +LI  +  
Sbjct: 413 YFKLIEAGHSPDRLTYHLILKMLCEDGKLSLAMQVNKEMKNRGIDPDLLTTTMLIHLLC- 471

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPR 489
             + + L  A +     V RG +P+  TF  + NGL   G   +AK   RL S    LP 
Sbjct: 472 --RLEMLEEAFEEFDNAVRRGIIPQYITFKMIDNGLRSKGMSDMAK---RLSSLMSSLPH 526

Query: 490 QFKL 493
             KL
Sbjct: 527 SKKL 530


>gi|297848576|ref|XP_002892169.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338011|gb|EFH68428.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 662

 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 108/430 (25%), Positives = 191/430 (44%), Gaps = 40/430 (9%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           A  FF        Y H+   +   +D+ A  +D   +  +   ++      T      + 
Sbjct: 135 AWSFFCWSRKQKKYTHNLECYVSLVDVLALAKDVDRIRFICSEIRKFEFPMTVSPGNSLI 194

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFK 204
           + +   G  +  + ++  M E+G   +L ++N +++ L     V+ A  +F+V   G+ K
Sbjct: 195 KSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIK 254

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
            DV++YN +  G+C   +T KALE L+ M  +GL  +  TY  +++  +           
Sbjct: 255 PDVVTYNTMIKGYCKAGQTQKALEKLRVMETKGLEADKITYMTMIQACYADSDFSSCVAL 314

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
           + EM ++  ++    ++ ++ G    G++     VF+ M+  G  P+VA Y  +I    K
Sbjct: 315 YQEMDEKGLQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAK 374

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF--------------- 369
             SVE+AI +   M+ +G+ P+  TY+VV+ GLC  G +E A+++               
Sbjct: 375 TGSVEDAIRLLHRMIDEGFNPDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAINSMF 434

Query: 370 ----------VGRMKDDE----------CEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
                      GR+ + E          C  +   YN LI  F   G+++  L LF++M 
Sbjct: 435 YSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEALALFKRME 494

Query: 410 SGV-CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
               C   + TY ILIS MF   ++++ L   KL   M+D+G  P       +  GL L 
Sbjct: 495 EEEGCDQTVYTYTILISGMFKEHRNEEAL---KLWDMMIDKGITPTAACLRALSTGLCLS 551

Query: 469 GNQGLAKEIL 478
           G    A +IL
Sbjct: 552 GKVARACKIL 561


>gi|222640310|gb|EEE68442.1| hypothetical protein OsJ_26820 [Oryza sativa Japonica Group]
          Length = 621

 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 113/384 (29%), Positives = 187/384 (48%), Gaps = 23/384 (5%)

Query: 112 LAARL--RDYRTVWTLV-------------HRMKSL---SLGPTQKTFAIIAERYVSAGK 153
           LA+R+  R+ RT  TL+               + SL    L P    +      Y  AG 
Sbjct: 63  LASRMPARNLRTYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGM 122

Query: 154 ADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNV 212
              A ++F+ M   GC ++  ++  +L  L     V +A  +F   R    A D   Y  
Sbjct: 123 LTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYAT 182

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           + +G C   RT +A  +L+E +  G  PN+  YN ++ GY  AG++E A + F  M   +
Sbjct: 183 MVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNR 242

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
           C  +V TYT ++HG    G+++RA  +F  MV  G+ P+V TY A+IQ  C +  ++ A 
Sbjct: 243 CSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAF 302

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
            +   M   G +PN  T++V+I  LC   ++E A  F+G +     + N   Y  LI   
Sbjct: 303 RLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGL 362

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
           C  G+I+   EL +KM S   +P+  +Y+ LI  +  +KK   L  A  +L +M+++G  
Sbjct: 363 CKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKK---LSQATLMLEDMMEKGIQ 419

Query: 453 PRKFTFNRVLNGLLL-IGNQGLAK 475
               T+  +++ L+  +G++G  K
Sbjct: 420 ASPVTYTIIIDELVREVGSEGPKK 443



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 157/336 (46%), Gaps = 37/336 (11%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P    +  + + Y +AG+ + A+K+F  M  + C  ++ ++  ++  LCK  KVE+A  L
Sbjct: 210 PNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVL 269

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F ++     + +V++Y  +  G C       A  +L  M   GL PN  T+++++    +
Sbjct: 270 FSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCK 329

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
             ++EEA  F   + K+  +++ V YT+++ G    G+I  A  +   M++ G +P   +
Sbjct: 330 REKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHS 389

Query: 315 YNAMIQVLCKKDSVENAIL-----------------------------------VFEEMV 339
           Y+++I  LC++  +  A L                                   +F++M+
Sbjct: 390 YSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMI 449

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             G  P+  TY V +R  C  G ME A   + +M D    PN+ TYN LIR + + G + 
Sbjct: 450 ATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVS 509

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
           +    FE M      PN D+Y +L+  + V+K S D
Sbjct: 510 QAFSTFEVMVGKGWKPNEDSYTVLL-RLVVKKSSSD 544



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 168/360 (46%), Gaps = 12/360 (3%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L  RM    L P   T+  + +   + G    A ++   M  +G   +  +F+ ++D LC
Sbjct: 269 LFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALC 328

Query: 185 KEKKVEKAYNLF--KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           K +KVE+A  LF   + +   K + + Y  + +G C   + + A E++++M+  G  P+ 
Sbjct: 329 KREKVEEA-QLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDA 387

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            +Y+ ++ G  R  ++ +A     +M ++  +   VTYT I+         +  + +FD 
Sbjct: 388 HSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDK 447

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M+  G+ P + TY   ++  C++  +E+A  +  +MV +G  PN  TYN +IRG  + G 
Sbjct: 448 MIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGL 507

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG-SGVCLPNLD--T 419
           + +A      M     +PN  +Y +L+R        +  +++++      +   N D   
Sbjct: 508 VSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQESNYDEIV 567

Query: 420 YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           + ILI  +  +    +      LL  M + G+ P   T N ++ G + + N+   +EI R
Sbjct: 568 WKILIYGLLQKGSVAEF---SSLLSVMKEHGYQPSN-TINAMITGEITVTNE--VQEIAR 621



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           AHS SS    ID   R +       ++  M    +  +  T+ II +  V    ++   K
Sbjct: 387 AHSYSSL---IDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKK 443

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF--KVFRGKFKADVISYNVIANGW 217
           IF  M   G    + ++   +   C+E ++E A ++    V RG F  ++++YN +  G+
Sbjct: 444 IFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFP-NLVTYNTLIRGY 502

Query: 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA---WRFFLEMKKRKCE 274
             +   ++A    + MV +G  PN  +Y ++L+   +    + +   W+       ++  
Sbjct: 503 ANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQESN 562

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319
            D + +  +++G    G +    ++   M   G  PS  T NAMI
Sbjct: 563 YDEIVWKILIYGLLQKGSVAEFSSLLSVMKEHGYQPS-NTINAMI 606


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 181/369 (49%), Gaps = 5/369 (1%)

Query: 56   LTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNI-LSYHPTYAHSPS--SFDHAIDL 112
              ++L C ++     ++  ++K L  H  KA+  +N+ L    ++  +PS  +++  ID 
Sbjct: 739  FAESLVCNTICEDDSVLIPLVKFLCKHG-KAVDAYNVFLKLTKSFCITPSLEAYNSLIDG 797

Query: 113  AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS 172
              + R     W L ++MK+    P   T+ +  +    +GK      ++  M   GC+ +
Sbjct: 798  LLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPN 857

Query: 173  LNSFNTILDLLCKEKKVEKAYNL-FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLK 231
              + N ++  L K   ++KA +L + +  G F     +Y  + +G   + R  +A +  +
Sbjct: 858  TITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFE 917

Query: 232  EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
            EM+D G  PN   YNI++ G+ + G +E A   F  M K     D+ +Y+ +V    +VG
Sbjct: 918  EMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVG 977

Query: 292  EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351
            ++  A + F+ +   G+ P +  YN MI  L +   VE A+ +F+EM  +G  P+  TYN
Sbjct: 978  KVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYN 1037

Query: 352  VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411
             +I  L   G +E A +    ++    EPNV TYN LIR    +G  +R   +++KM  G
Sbjct: 1038 ALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMSGNPDRAYAVYKKMMVG 1097

Query: 412  VCLPNLDTY 420
             C PN  T+
Sbjct: 1098 GCRPNTGTF 1106



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/401 (26%), Positives = 178/401 (44%), Gaps = 39/401 (9%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            + RD  TV  L+  M+SL L P   TF I       AGK D A  I   M + GC   +
Sbjct: 238 GKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDV 297

Query: 174 NSFNTILDLLCKEKKVEKAYNLF-------------------------------KVFRGK 202
            ++  ++D LC   K+  A  LF                               K F  +
Sbjct: 298 VTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSE 357

Query: 203 FKA-----DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
            +A     DV+++ ++ +  C V + ++A   L  M  +G+ PNL TYN ++ G  R  +
Sbjct: 358 MEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNR 417

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           ++EA   F  M+    E    TY   +  +G  GE  +A   F+ M   G++P++   NA
Sbjct: 418 LDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNA 477

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377
            +  L ++  +E A   F  +   G  P++ TYN+++R     G ++ A++ +  M+++ 
Sbjct: 478 SLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENG 537

Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLL 437
           C+P V   N LI     A  ++   ++F++M      P + TYN L++ +    K   + 
Sbjct: 538 CDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGL---GKEGRVQ 594

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
            A  L   M+     P   +FN +L+ L   G   LA ++L
Sbjct: 595 EATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKML 635



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 171/336 (50%), Gaps = 6/336 (1%)

Query: 130  KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV 189
            KS  + P+ + +  + +  + A   + A  +F  M   GC   + ++N  LD L K  K+
Sbjct: 780  KSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKI 839

Query: 190  EKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
            ++ ++L++  +FRG  K + I++N++  G       +KA+++  +++    +P   TY  
Sbjct: 840  KELFDLYEEMLFRG-CKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGP 898

Query: 248  VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
            ++ G  + G++EEA +FF EM    C  +   Y  +++GFG  G+++ A  +F  MV  G
Sbjct: 899  LIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEG 958

Query: 308  VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
            + P + +Y+ M+  LC    V++A+  FEE+   G  P+   YN++I GL  +  +E AL
Sbjct: 959  IRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEAL 1018

Query: 368  EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
                 M++    P++ TYN LI     AG +E   +++E++      PN+ TYN LI   
Sbjct: 1019 SLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGH 1078

Query: 428  FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
             +    D      K   +M+  G  P   TF ++ N
Sbjct: 1079 SMSGNPDRAYAVYK---KMMVGGCRPNTGTFAQLPN 1111



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 169/321 (52%), Gaps = 5/321 (1%)

Query: 152  GKADRAVKIFLSMHEHGC-RQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVIS 209
            GKA  A  +FL + +  C   SL ++N+++D L K +  E A+ LF K+       DV +
Sbjct: 766  GKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFT 825

Query: 210  YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
            YN+  +      +  +  ++ +EM+ RG  PN  T+NIV+ G  ++  +++A   + ++ 
Sbjct: 826  YNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLM 885

Query: 270  KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
                     TY  ++ G   +G ++ A+  F+ M++ G +P+   YN ++    K+  VE
Sbjct: 886  SGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVE 945

Query: 330  NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
             A  +F  MV +G  P+  +Y++++  LC  G+++ AL +   +K    +P++  YN++I
Sbjct: 946  TACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMI 1005

Query: 390  RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
                 +  +E  L LF++M +    P+L TYN LI ++ +    ++   AGK+  E+  +
Sbjct: 1006 NGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEE---AGKMYEELQLK 1062

Query: 450  GFMPRKFTFNRVLNGLLLIGN 470
            G  P  FT+N ++ G  + GN
Sbjct: 1063 GLEPNVFTYNALIRGHSMSGN 1083



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 151/335 (45%), Gaps = 11/335 (3%)

Query: 100 AHSPSSFDHAIDLAARLRDY------RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGK 153
           +H P    + I L  +  D+      +  W+    M++    P   TF I+ +     GK
Sbjct: 327 SHKPDRVTY-ITLLDKFSDHGDLDAIKEFWS---EMEADGYLPDVVTFTILIDALCKVGK 382

Query: 154 ADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNV 212
            D A      M + G   +L+++NT++  L +  ++++A  LF        +    +Y +
Sbjct: 383 VDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYIL 442

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
             + +     + KA++  ++M   G+ PN+   N  L      G++EEA  FF  +KK  
Sbjct: 443 FIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCG 502

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
              D +TY  ++  +G  G +  A  +   M   G  P V   N++I  L K D V+ A 
Sbjct: 503 LAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAW 562

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
            +F+ M      P   TYN ++ GL   G ++ A      M  D+C PN  ++N L+   
Sbjct: 563 KMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCL 622

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           C  GE++  L++  +M    C P++ TYN +I  +
Sbjct: 623 CKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGL 657



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 110/421 (26%), Positives = 186/421 (44%), Gaps = 11/421 (2%)

Query: 74  QIIKRLWNHALKALHFFNILSYHPTYAHSPSS--FDHAIDLAARLRDYRTVWTLVHRMKS 131
            I+ R +  A +      +LS        P     +  ID   +       W +  RMK 
Sbjct: 511 NILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKE 570

Query: 132 LSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEK 191
           + L PT  T+  +       G+   A  +F  M    C  +  SFNT+LD LCK  +V+ 
Sbjct: 571 MKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDL 630

Query: 192 AYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250
           A   LF++       DV++YN +  G     R N A  +  +M  + + P+  T   +L 
Sbjct: 631 ALKMLFRMTEMNCFPDVLTYNTVIYGLIKENRVNYAFWLFHQM-KKVIYPDYVTLCTLLP 689

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCE-IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
           G  + G+IE+A+R   E      +  D   +  ++ G  +  EI ++    + +V   + 
Sbjct: 690 GVIKDGRIEDAFRVAKEFVHHVGDHADGSFWEDLMGGILIEAEIGQSILFAESLVCNTIC 749

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY--MPNSTTYNVVIRGLCHTGEMERAL 367
              +    +++ LCK     +A  VF ++  K +   P+   YN +I GL      E A 
Sbjct: 750 EDDSVLIPLVKFLCKHGKAVDAYNVFLKLT-KSFCITPSLEAYNSLIDGLLKARLTEMAW 808

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
               +MK+  C P+V TYN+ +     +G+I+   +L+E+M    C PN  T+NI+I   
Sbjct: 809 GLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVI--- 865

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
           F   KS+ L  A  L  +++   F P  +T+  +++GLL +G    AK+        G +
Sbjct: 866 FGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCM 925

Query: 488 P 488
           P
Sbjct: 926 P 926



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 130/261 (49%), Gaps = 1/261 (0%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           RL        L + M+SL L  T  T+ +  + Y  +G++ +A+K F  M  +G   ++ 
Sbjct: 414 RLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIV 473

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
           + N  L  L ++ ++E+A   F   +      D I+YN++   +    R + A+++L EM
Sbjct: 474 ACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEM 533

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
            + G +P +   N ++   ++A +++EAW+ F  MK+ K    VVTY T++ G G  G +
Sbjct: 534 EENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRV 593

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
           + A  +F GM+     P+  ++N ++  LCK   V+ A+ +   M      P+  TYN V
Sbjct: 594 QEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTV 653

Query: 354 IRGLCHTGEMERALEFVGRMK 374
           I GL     +  A     +MK
Sbjct: 654 IYGLIKENRVNYAFWLFHQMK 674



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 157/348 (45%), Gaps = 10/348 (2%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F   ID   ++      +  +  MK   + P   T+  +    +   + D A+++F SM
Sbjct: 369 TFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSM 428

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVK--- 221
              G   +  ++   +D   K  +  KA   F+    K K + I  N++A    L     
Sbjct: 429 ESLGLETTAYTYILFIDYYGKSGESGKAIKTFE----KMKTNGIVPNIVACNASLYSLAE 484

Query: 222 --RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
             R  +A E    +   GL P+  TYNI+++ Y +AG++++A +   EM++  C+ +VV 
Sbjct: 485 QGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVI 544

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
             +++        +  A  +F  M    + P+V TYN ++  L K+  V+ A  +F+ M+
Sbjct: 545 INSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMI 604

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
                PN+ ++N ++  LC  GE++ AL+ + RM +  C P+V TYN +I        + 
Sbjct: 605 ADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKENRVN 664

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
               LF +M   V  P+  T   L+  +    + +D     K  +  V
Sbjct: 665 YAFWLFHQM-KKVIYPDYVTLCTLLPGVIKDGRIEDAFRVAKEFVHHV 711



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 96/440 (21%), Positives = 177/440 (40%), Gaps = 74/440 (16%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAA---RLRDYRTVWTLVH-------------- 127
           +A  FFN ++  P   H+  + ++ +++     R+ D   V+ L+               
Sbjct: 104 QAFSFFNSVAEMPRVIHTTETCNYVLEMLRAHRRVEDMVVVFNLMQKQIIKRSINTYLTI 163

Query: 128 ----------RMKSLSLGPTQKT-FAIIAERYVS-------AGKADRAVKIFLSMHEHGC 169
                     R   ++L   +K  F +    Y+        +G    A+K++  M   G 
Sbjct: 164 FKVLYIRGGLREAPVALEKMRKVGFVLNGYSYIGLIHLLLKSGFCREALKVYRRMVSEGI 223

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALE 228
           + SL +++ ++  L K + +E    L +       + ++ ++ +         + ++A  
Sbjct: 224 KPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYG 283

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           +LK M D G  P++ TY +++     AG++  A   FL+MK    + D VTY T++  F 
Sbjct: 284 ILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFS 343

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G++   +  +  M   G LP V T+  +I  LCK   V+ A    + M  +G  PN  
Sbjct: 344 DHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLH 403

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
           TYN +I GL     ++ ALE    M+    E    TY + I Y+  +GE  + ++ FEKM
Sbjct: 404 TYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKM 463

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
            +   +PN+   N  + S+  + + ++                                 
Sbjct: 464 KTNGIVPNIVACNASLYSLAEQGRLEE--------------------------------- 490

Query: 469 GNQGLAKEILRLQSRCGRLP 488
                AKE      +CG  P
Sbjct: 491 -----AKEFFNGLKKCGLAP 505


>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
          Length = 735

 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 172/344 (50%), Gaps = 5/344 (1%)

Query: 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193
           L P    +      Y  AG    A ++F+ M   GC ++  ++  +L  L     V +A 
Sbjct: 103 LAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAM 162

Query: 194 NLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
            +F   R    A D   Y  + +G C   RT +A  +L+E +  G  PN+  YN ++ GY
Sbjct: 163 AVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGY 222

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
             AG++E A + F  M   +C  +V TYT ++HG    G+++RA  +F  MV  G+ P+V
Sbjct: 223 CNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNV 282

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            TY A+IQ  C +  ++ A  +   M   G +PN  T++V+I  LC   ++E A  F+G 
Sbjct: 283 VTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGS 342

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           +     + N   Y  LI   C  G+I+   EL +KM S   +P+  +Y+ LI  +  +KK
Sbjct: 343 LVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKK 402

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL-IGNQGLAK 475
              L  A  +L +M+++G      T+  +++ L+  +G++G  K
Sbjct: 403 ---LSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKK 443



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 157/336 (46%), Gaps = 37/336 (11%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P    +  + + Y +AG+ + A+K+F  M  + C  ++ ++  ++  LCK  KVE+A  L
Sbjct: 210 PNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVL 269

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F ++     + +V++Y  +  G C       A  +L  M   GL PN  T+++++    +
Sbjct: 270 FSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCK 329

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
             ++EEA  F   + K+  +++ V YT+++ G    G+I  A  +   M++ G +P   +
Sbjct: 330 REKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHS 389

Query: 315 YNAMIQVLCKKDSVENAIL-----------------------------------VFEEMV 339
           Y+++I  LC++  +  A L                                   +F++M+
Sbjct: 390 YSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMI 449

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             G  P+  TY V +R  C  G ME A   + +M D    PN+ TYN LIR + + G + 
Sbjct: 450 ATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVS 509

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
           +    FE M      PN D+Y +L+  + V+K S D
Sbjct: 510 QAFSTFEVMVGKGWKPNEDSYTVLL-RLVVKKSSSD 544



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 87/257 (33%), Positives = 126/257 (49%), Gaps = 3/257 (1%)

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           +Y  + N +CL      A + L  ++  GL P+   Y   + GY RAG +  A R F+ M
Sbjct: 74  TYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLM 133

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
             R C     TYT ++HG    G ++ A  VF GM      P    Y  M+  LC+    
Sbjct: 134 PLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRT 193

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           E A ++ EE +  G+ PN   YN +I G C+ GEME AL+    M  + C PNV+TY  L
Sbjct: 194 EEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTEL 253

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           I   C +G++ER + LF +M      PN+ TY  LI     +     L  A +LL  M  
Sbjct: 254 IHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQG---QCNEGHLQCAFRLLHLMET 310

Query: 449 RGFMPRKFTFNRVLNGL 465
            G +P  +TF+ +++ L
Sbjct: 311 NGLVPNDWTFSVLIDAL 327



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 172/371 (46%), Gaps = 16/371 (4%)

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
           +  + L+H M++  L P   TF+++ +      K + A     S+ + G + +   + ++
Sbjct: 299 QCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSL 358

Query: 180 LDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           +D LCK  K++ A  L  K+    F  D  SY+ + +G C  K+ ++A  +L++M+++G+
Sbjct: 359 IDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGI 418

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
             +  TY I++    R    E   + F +M       D+VTYT  V  +   G ++ A +
Sbjct: 419 QASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAES 478

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
           +   MV+ GV P++ TYN +I+       V  A   FE MVGKG+ PN  +Y V++R + 
Sbjct: 479 MIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVV 538

Query: 359 HTGEMERALEF--VGRMKD------DECEPNV----QTYNILIRYFCDAGEIERGLELFE 406
                + +++   +  MKD      D  E  +      Y+  IR  C    +E     F 
Sbjct: 539 KKSSSDNSVDIWKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFM 598

Query: 407 KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
            M +    P+ D Y  +I      K   D L    LL  M   G++P   ++  +++ L 
Sbjct: 599 GMQNANLTPSEDVYTSIIDCCCRLKILTDALT---LLDSMTKSGYLPHLESYRIIISSLC 655

Query: 467 LIGNQGLAKEI 477
             GN   AKE+
Sbjct: 656 EGGNFRTAKEV 666



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 141/349 (40%), Gaps = 49/349 (14%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+ +M S    P   +++ + +      K  +A  +   M E G + S  ++  I+D L 
Sbjct: 374 LMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELV 433

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           +E   E    +F K+       D+++Y V    +C   R   A  ++ +MVDRG+ PNL 
Sbjct: 434 REVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLV 493

Query: 244 TYNIVLKGYFRAGQIEEAWRFF-------------------------------------L 266
           TYN +++GY   G + +A+  F                                      
Sbjct: 494 TYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIA 553

Query: 267 EMKKRKCEIDVVT----------YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
           +MK  +  ++ +T          Y+  +     V  ++ A++ F GM N  + PS   Y 
Sbjct: 554 DMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYT 613

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
           ++I   C+   + +A+ + + M   GY+P+  +Y ++I  LC  G    A E  G +   
Sbjct: 614 SIIDCCCRLKILTDALTLLDSMTKSGYLPHLESYRIIISSLCEGGNFRTAKEVFGDLLLK 673

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           E   +   + ILI      G +     L   M      P+ +T N +I+
Sbjct: 674 ESNYDEIVWKILIYGLLQKGSVAEFSSLLSVMKEHGYQPS-NTINAMIT 721


>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
          Length = 716

 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 149/278 (53%), Gaps = 1/278 (0%)

Query: 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVIS 209
           AG+ ++   IF  +  +G    + S++ ++  L K  +  +  N+F   + + F  D  +
Sbjct: 407 AGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARA 466

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           YN + +G+C   + +KA E+L+EM ++ + P + TY  ++ G  +  +++EA+  F E K
Sbjct: 467 YNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAK 526

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
            +  E++VV Y++++ GFG VG I  A  + + M+  G+ P+V T+N+++  L K + + 
Sbjct: 527 SKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEIN 586

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
            A++ F+ M      PN+ TY+++I GLC   +  +A  F   M+     PNV TY  +I
Sbjct: 587 EALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMI 646

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
                 G I     LFE+  +   +P+  ++N LI  M
Sbjct: 647 SGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGM 684



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 112/422 (26%), Positives = 190/422 (45%), Gaps = 41/422 (9%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII 144
           +AL  F ++        + S+++  ID+          + ++  M+  SL P   T  I+
Sbjct: 238 EALSLFEVMKKDAE--PNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIM 295

Query: 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKF 203
            +R   A K + A KIF S  + GC     ++ +++D L K+ +V++AY LF K+     
Sbjct: 296 VDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGH 355

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
            A+ + Y  +   + +  R     +V KE++ RG  P+LT  N  +   F+AG++E+   
Sbjct: 356 NANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRM 415

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF-------------------DGMV 304
            F +++      DV +Y+ ++HG    G+ +   N+F                   DG  
Sbjct: 416 IFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFC 475

Query: 305 NGG----------------VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G                V P+VATY A++  L K D ++ A ++FEE   KG   N  
Sbjct: 476 KSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVV 535

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            Y+ +I G    G ++ A   +  M      PNV T+N L+     A EI   L  F+ M
Sbjct: 536 LYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSM 595

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
               C PN  TY+ILI+ +   +K +   V      +M  +G +P   T+  +++GL  +
Sbjct: 596 KEMKCPPNTYTYSILINGLCRVQKYNKAFV---FWQDMQKQGLVPNVVTYTTMISGLAKV 652

Query: 469 GN 470
           GN
Sbjct: 653 GN 654



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 192/420 (45%), Gaps = 56/420 (13%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAII-AER--------------YVSAGKADRAVKIFLSMHE 166
           +W L    K+  LG  ++ FA + AER              Y SAG+ + A K+   + E
Sbjct: 157 IWVLC---KAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRE 213

Query: 167 HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKA 226
            GC  S+ SFN+IL  L K++KV++A +LF+V +   + +  +YN+I +  CL  R  +A
Sbjct: 214 RGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGRVEEA 273

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
             +L EM    L PNL T NI++    +A ++EEA++ F    +R C  D VTY +++ G
Sbjct: 274 YRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDG 333

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL--------------------CKKD 326
            G  G++  A  +F+ M++ G   +   Y ++I+                      CK D
Sbjct: 334 LGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPD 393

Query: 327 ---------------SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
                           VE   ++FE++   G++P+  +Y+++I GL   G+         
Sbjct: 394 LTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFH 453

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
            MK      + + YN ++  FC +G++ +  E+ E+M      P + TY  ++  +    
Sbjct: 454 AMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGL---A 510

Query: 432 KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           K D L  A  L  E   +G       ++ +++G   +G    A  IL    + G  P  +
Sbjct: 511 KIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVY 570



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 175/366 (47%), Gaps = 5/366 (1%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           S  SF+  +    + R      +L   MK     P   T+ II +     G+ + A +I 
Sbjct: 219 SVVSFNSILTCLGKKRKVDEALSLFEVMKK-DAEPNSSTYNIIIDMLCLGGRVEEAYRIL 277

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLV 220
             M       +L + N ++D LCK +K+E+AY +F+    +    D ++Y  + +G    
Sbjct: 278 DEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKK 337

Query: 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
            + ++A  + ++M+D G N N   Y  +++ +F  G+ E+  + F E+ +R C+ D+   
Sbjct: 338 GQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLL 397

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340
            T +      GE+++ R +F+ + + G LP V +Y+ +I  L K         +F  M  
Sbjct: 398 NTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQ 457

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           +G+  ++  YN V+ G C +G++ +A E +  MK+   +P V TY  ++        ++ 
Sbjct: 458 QGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDE 517

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
              LFE+  S     N+  Y+ LI       + D+  +   +L EM+ +G  P  +T+N 
Sbjct: 518 AYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYL---ILEEMMKKGLTPNVYTWNS 574

Query: 461 VLNGLL 466
           +L+ L+
Sbjct: 575 LLDALV 580



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 179/382 (46%), Gaps = 8/382 (2%)

Query: 111 DLAA---RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH 167
           DLAA   R R        V  M+ L   P    + ++      A + +RA+++   M E 
Sbjct: 15  DLAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEV 74

Query: 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKA 226
           G    ++ F T++  L +E +V  A  L    +G   + D++ YNV  + +      + A
Sbjct: 75  GYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMA 134

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
            +   E+  +GL P+  +Y  ++    +AG++ EA   F +M+  +       Y T++ G
Sbjct: 135 CKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMG 194

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
           +G  G  + A  + + +   G +PSV ++N+++  L KK  V+ A+ +FE M  K   PN
Sbjct: 195 YGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVM-KKDAEPN 253

Query: 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
           S+TYN++I  LC  G +E A   +  M+     PN+ T NI++   C A ++E   ++FE
Sbjct: 254 SSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFE 313

Query: 407 KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
                 C P+  TY  LI  +  + + D+   A +L  +M+D G       +  ++    
Sbjct: 314 SASQRGCNPDCVTYCSLIDGLGKKGQVDE---AYRLFEKMLDAGHNANPVVYTSLIRNFF 370

Query: 467 LIGNQGLAKEILRLQSRCGRLP 488
           + G +    ++ +   R G  P
Sbjct: 371 IHGRKEDGHKVFKELIRRGCKP 392



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 142/269 (52%), Gaps = 7/269 (2%)

Query: 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
            S S   H +  A + R+   ++   H MK        + +  + + +  +GK  +A +I
Sbjct: 430 RSYSILIHGLTKAGQARETSNIF---HAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEI 486

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCL 219
              M E   + ++ ++  I+D L K  ++++AY LF+  + K  + +V+ Y+ + +G+  
Sbjct: 487 LEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGK 546

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
           V R ++A  +L+EM+ +GL PN+ T+N +L    +A +I EA   F  MK+ KC  +  T
Sbjct: 547 VGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYT 606

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y+ +++G   V +  +A   +  M   G++P+V TY  MI  L K  ++ +A  +FE   
Sbjct: 607 YSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFK 666

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALE 368
             G +P++ ++N +I G+ +     RA+E
Sbjct: 667 ANGGIPDAASFNALIEGMSNAN---RAME 692



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 166/359 (46%), Gaps = 7/359 (1%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
           AR         LV  +K   L P    + +  + +  AG  D A K F  +   G +   
Sbjct: 91  AREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFHELKAQGLKPDD 150

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKAD-VISYNVIANGWCLVKRTNKALEVLKE 232
            S+ +++ +LCK  ++ +A  LF     +       +YN +  G+    R   A ++L+ 
Sbjct: 151 VSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLER 210

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           + +RG  P++ ++N +L    +  +++EA   F E+ K+  E +  TY  I+    + G 
Sbjct: 211 LRERGCIPSVVSFNSILTCLGKKRKVDEALSLF-EVMKKDAEPNSSTYNIIIDMLCLGGR 269

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           ++ A  + D M +  + P++ T N M+  LCK   +E A  +FE    +G  P+  TY  
Sbjct: 270 VEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCS 329

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           +I GL   G+++ A     +M D     N   Y  LIR F   G  E G ++F+++    
Sbjct: 330 LIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRG 389

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV-DRGFMPRKFTFNRVLNGLLLIGN 470
           C P+L   N  +  +F   + +     G+++ E +   GF+P   +++ +++GL   G 
Sbjct: 390 CKPDLTLLNTYMDCVFKAGEVEK----GRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQ 444



 Score = 39.3 bits (90), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 26/131 (19%), Positives = 56/131 (42%), Gaps = 4/131 (3%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  +D   +  +          MK +   P   T++I+        K ++A   +  M
Sbjct: 571 TWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDM 630

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFK-ADVISYNVIANGWCLVKRT 223
            + G   ++ ++ T++  L K   +  AY+LF+ F+      D  S+N +  G   +   
Sbjct: 631 QKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEG---MSNA 687

Query: 224 NKALEVLKEMV 234
           N+A+E  +  V
Sbjct: 688 NRAMEAYQTTV 698


>gi|297803426|ref|XP_002869597.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315433|gb|EFH45856.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 538

 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 181/372 (48%), Gaps = 11/372 (2%)

Query: 109 AIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG 168
            +DL A++ D      L++  +     P  + F  + + +    K   A   F+ M ++G
Sbjct: 146 GVDLPAKVFD-----ALLYSYRECDSTP--RVFDSLFKTFAHLKKFRNATDTFMQMKDYG 198

Query: 169 CRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKAL 227
              ++ S N  +  L  + +V+ A   ++ + R K   +  + N++ +G+C   + +K +
Sbjct: 199 FLPTVESCNAYMSSLLGQGRVDIALRFYREMRRCKISPNTYTLNMVMSGYCRSGKLDKGI 258

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
           E+L++M   G      +YN ++ G+   G +  A +    M K   + +VVT+ T++HGF
Sbjct: 259 ELLQDMERLGFRATHVSYNTLIAGHCEKGLLSSALKLKNMMGKNGLQPNVVTFNTLIHGF 318

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
               +++ A  VF  M    + P+  TYN +I    ++   E A   +E+MV  G   + 
Sbjct: 319 CRAVKLQEASKVFGEMKALNLPPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDI 378

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
            TYN +I GLC   +  +A +FV  +  +   PN  T++ LI   C     +RG EL++ 
Sbjct: 379 LTYNTLILGLCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMGQCVRRNADRGFELYKS 438

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467
           M    C PN  T+NILIS+     K++D   A ++L EMV R       T ++V NGL  
Sbjct: 439 MIRSGCHPNEQTFNILISAFC---KNEDFDGAAQVLREMVRRSIPLDSRTVHQVCNGLNH 495

Query: 468 IGNQGLAKEILR 479
            G   L KE+L+
Sbjct: 496 QGKDQLVKELLQ 507



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 142/326 (43%), Gaps = 55/326 (16%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           +D+A  LR YR        M+   + P   T  ++   Y  +GK D+ +++   M   G 
Sbjct: 219 VDIA--LRFYR-------EMRRCKISPNTYTLNMVMSGYCRSGKLDKGIELLQDMERLGF 269

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK--FKADVISYNVIANGWCLVKRTNKAL 227
           R +  S+NT++   C++  +  A  L K   GK   + +V+++N + +G+C   +  +A 
Sbjct: 270 RATHVSYNTLIAGHCEKGLLSSALKL-KNMMGKNGLQPNVVTFNTLIHGFCRAVKLQEAS 328

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
           +V  EM    L PN  TYN ++ GY + G  E A+RF+ +M     + D++TY T++ G 
Sbjct: 329 KVFGEMKALNLPPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNTLILGL 388

Query: 288 GVVGEIKRA-----------------------------RN------VFDGMVNGGVLPSV 312
               + ++A                             RN      ++  M+  G  P+ 
Sbjct: 389 CKQAKTRKAAQFVKELDKENLVPNSSTFSALIMGQCVRRNADRGFELYKSMIRSGCHPNE 448

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            T+N +I   CK +  + A  V  EMV +    +S T + V  GL H G+ +   E +  
Sbjct: 449 QTFNILISAFCKNEDFDGAAQVLREMVRRSIPLDSRTVHQVCNGLNHQGKDQLVKELLQE 508

Query: 373 MKD--------DECEPNVQTYNILIR 390
           M+         D CE      N+ I+
Sbjct: 509 MEGKKFLQEPLDNCEAECINQNVFIK 534


>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
 gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
          Length = 761

 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 182/356 (51%), Gaps = 5/356 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P + T+  +        + DRA+ +F +    G + ++  +N ++  LC+E  + +A  +
Sbjct: 354 PDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQM 413

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             ++      +D+ +YN++ NG C +   + A  ++ + + +G  P++ T+N ++ GY +
Sbjct: 414 MNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCK 473

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
             ++E   +   +M       DV+TY ++++G     + +     F+ MV  G +P+  T
Sbjct: 474 QLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKIT 533

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN + + LCK   V  A+ + +E++ KG  P++ ++  +I G  + G+++ A +   RM 
Sbjct: 534 YNILTESLCKAGKVNEALDLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMG 593

Query: 375 DD-ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
           +  +      TYNI+I  F +  ++  G +LF +MG+G C P+  TY ++I    +   +
Sbjct: 594 EQYKVSHTTATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNT 653

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPR 489
           D      K L+EM+++GF+P   TF RV+N L +      A +I+      G +P 
Sbjct: 654 DS---GYKFLLEMIEKGFIPSLTTFGRVINCLCVQHRVHEAVDIIHFMVHNGIVPE 706



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 97/405 (23%), Positives = 191/405 (47%), Gaps = 41/405 (10%)

Query: 99  YAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADR 156
           Y   PS  S++  +++      ++    +  RMK++ + P   TF I  + +    +   
Sbjct: 105 YNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGIVPDVYTFTIRIKSFCRTKRPHS 164

Query: 157 AVKIFLSMHEHGCRQS-----------------------------------LNSFNTILD 181
           A+++  +M   GC+ +                                   +++FN +L 
Sbjct: 165 ALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDMLRIGIFPDVSTFNKLLH 224

Query: 182 LLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
            LCK+ +V+++  L  KV +    +++ ++N+   G C     + A+ +L  ++  GL P
Sbjct: 225 TLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTP 284

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           ++ TYN ++ G  +   + EA ++  ++     E D  TY T++ G+  +G ++ A  + 
Sbjct: 285 DVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKIL 344

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
            G +  G +P   TY ++I  LC+ D ++ A+ +F   +GKG  P    YN++I+GLC  
Sbjct: 345 QGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQE 404

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
           G + +AL+ +  M ++ C  ++ TYN++I   C  G +     L     +   +P++ T+
Sbjct: 405 GLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTF 464

Query: 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
           N LI     + K +  +   ++L +M   G  P   T+N VLNGL
Sbjct: 465 NTLIDGYCKQLKMETTI---QILNKMWSHGVTPDVITYNSVLNGL 506



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/414 (24%), Positives = 188/414 (45%), Gaps = 46/414 (11%)

Query: 117 RDYRT-VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS 175
            +YR   + L + M  + + P   TF  +       G+   + ++   + + G   +L +
Sbjct: 194 ENYRVEAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFT 253

Query: 176 FNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           FN  +  LC++  +  A ++   V R     DV++YN +  G C      +A + L ++V
Sbjct: 254 FNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLV 313

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
           + GL P+  TYN ++ GY + G ++ A +       +    D  TY ++++G     EI 
Sbjct: 314 NGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEID 373

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM---------------- 338
           RA  +F+  +  G+ P+V  YN +I+ LC++  +  A+ +  EM                
Sbjct: 374 RALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVI 433

Query: 339 -------------------VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
                              + KGY+P+  T+N +I G C   +ME  ++ + +M      
Sbjct: 434 NGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVT 493

Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA 439
           P+V TYN ++     A + E  +E FE M    C+PN  TYNIL  S+    K ++ L  
Sbjct: 494 PDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKVNEAL-- 551

Query: 440 GKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQFKL 493
             L+ E++++G  P   +F  +++G    G+   A ++ R      R+  Q+K+
Sbjct: 552 -DLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFR------RMGEQYKV 598



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 110/466 (23%), Positives = 206/466 (44%), Gaps = 43/466 (9%)

Query: 64  SLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVW 123
           S    P+ V  ++K+     LKAL  FN +     + HS  ++   I       ++  + 
Sbjct: 2   SASLLPKHVAAVLKQ-QKDPLKALEMFNKVKREDGFKHSLLTYKCIIQKLGFHGNFVAME 60

Query: 124 TLVHRMK-SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
            ++   +  +     +  +    + Y   GK   AV +F  M  + C  S+ S+N I+++
Sbjct: 61  NVLAETRMDIDNSLLEGVYIGAMKSYGRKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNI 120

Query: 183 LCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
           L +    ++A+ +F   +      DV ++ +    +C  KR + AL +L  MV +G   N
Sbjct: 121 LVESGYFKQAHKVFLRMKNVGIVPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLN 180

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
              Y  V+ G++      EA+  F +M +     DV T+  ++H     GE++ +  + +
Sbjct: 181 AVAYCTVVAGFYEENYRVEAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLN 240

Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            ++  G+  ++ T+N  IQ LC+K  +  A+ + + ++ +G  P+  TYN +I GLC   
Sbjct: 241 KVLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNS 300

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG------------------------- 396
            +  A +++ ++ +   EP+  TYN LI  +C  G                         
Sbjct: 301 NVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYC 360

Query: 397 ----------EIERGLELFE-KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
                     EI+R L LF   +G G+  P +  YN+LI  +    +   +L A +++ E
Sbjct: 361 SLINGLCQNDEIDRALALFNAALGKGL-KPTVILYNMLIKGLC---QEGLILQALQMMNE 416

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           M + G     +T+N V+NGL  +G    A  ++      G +P  F
Sbjct: 417 MSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVF 462



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 118/249 (47%), Gaps = 2/249 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   TF  + + Y    K +  ++I   M  HG    + ++N++L+ L K  K E     
Sbjct: 459 PDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMET 518

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F+    K    + I+YN++    C   + N+AL+++ E++++G+ P+  ++  ++ G+  
Sbjct: 519 FETMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEILNKGITPDTVSFATIISGFAN 578

Query: 255 AGQIEEAWRFFLEMKKR-KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
            G ++ A++ F  M ++ K      TY  +++ F    ++     +F  M  GG  P   
Sbjct: 579 NGDLKGAYQLFRRMGEQYKVSHTTATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTY 638

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           TY  MI   C   + ++      EM+ KG++P+ TT+  VI  LC    +  A++ +  M
Sbjct: 639 TYRVMIDGFCITGNTDSGYKFLLEMIEKGFIPSLTTFGRVINCLCVQHRVHEAVDIIHFM 698

Query: 374 KDDECEPNV 382
             +   P V
Sbjct: 699 VHNGIVPEV 707



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 110/249 (44%), Gaps = 2/249 (0%)

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           Y     +F+  ID   +     T   ++++M S  + P   T+  +      A K +  +
Sbjct: 457 YVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLM 516

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGW 217
           + F +M E GC  +  ++N + + LCK  KV +A +L  ++       D +S+  I +G+
Sbjct: 517 ETFETMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEILNKGITPDTVSFATIISGF 576

Query: 218 CLVKRTNKALEVLKEMVDR-GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID 276
                   A ++ + M ++  ++    TYNI++  +     +    + FLEM    C  D
Sbjct: 577 ANNGDLKGAYQLFRRMGEQYKVSHTTATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPD 636

Query: 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE 336
             TY  ++ GF + G           M+  G +PS+ T+  +I  LC +  V  A+ +  
Sbjct: 637 TYTYRVMIDGFCITGNTDSGYKFLLEMIEKGFIPSLTTFGRVINCLCVQHRVHEAVDIIH 696

Query: 337 EMVGKGYMP 345
            MV  G +P
Sbjct: 697 FMVHNGIVP 705


>gi|225430190|ref|XP_002282419.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial [Vitis vinifera]
 gi|296081989|emb|CBI20994.3| unnamed protein product [Vitis vinifera]
          Length = 597

 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 186/394 (47%), Gaps = 17/394 (4%)

Query: 96  HPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGP---TQKTFAIIAERYVSAG 152
            P +  S + F+  ID+ A+ R + + W LV         P   +  TFA++  RY  AG
Sbjct: 130 QPGFESSMTLFNSMIDVLAKSRAFDSAWLLVLDRIEGGEEPELVSSNTFAVLIRRYARAG 189

Query: 153 KADRAVKIFL------SMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKAD 206
               A++ F       S+ +     SL  F  +LD LCKE  V  A   F   RG   + 
Sbjct: 190 MTLSAIRTFEFAFSLDSIRDRDSEWSL--FKILLDSLCKEGHVRVASEYFDQQRGLDPSW 247

Query: 207 VIS---YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
           V S   YNV+ NGW   ++  +A ++ + M    + P + TY  +++GY R  + E+A  
Sbjct: 248 VPSIRVYNVLLNGWFRSRKLKRAEQLWRTMKRENVKPTVVTYGTLVEGYCRMRRSEKAIE 307

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
              EM+ +  E +V+ Y  I+      G  K A  + +  +     P+++TYN++++  C
Sbjct: 308 LVGEMRGKGIEPNVIVYNPIIDSLAEAGRFKEAMGMMERCLVSETGPTISTYNSLVKGFC 367

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
           K   +  A  V + M+ +G+ P  TTYN   R     G+ E  +    +M +    P+  
Sbjct: 368 KAGDLVGASKVLKMMISRGFDPTLTTYNYFFRYFSRCGKTEEGMNLYTKMIESGHTPDRL 427

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
           TY++LI+  C+   ++  +++ ++M +  C  +L T  +L+  +    K   L  A    
Sbjct: 428 TYHLLIKMMCEEERLDLAVQVSKEMRARGCDLDLATSTMLVHLLC---KMHRLEEAFAEF 484

Query: 444 IEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
            +M+ RG +P+  TF R+ N L   G   +A+++
Sbjct: 485 EDMIRRGIVPQYLTFERMNNALRKRGLTEMARKL 518


>gi|224097576|ref|XP_002310993.1| predicted protein [Populus trichocarpa]
 gi|222850813|gb|EEE88360.1| predicted protein [Populus trichocarpa]
          Length = 877

 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 178/366 (48%), Gaps = 4/366 (1%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           +LV  M+   +      +  +   Y   G  ++ + +F  + E G   S+ S+  ++++ 
Sbjct: 399 SLVREMEEEGIDAPIDIYHTMMNGYTMIGNEEKCLIVFKRLKECGFAPSVISYGCLINMY 458

Query: 184 CKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
            K  KV KA  + K+      K ++ +Y+++ NG+  +K    A  V ++++  GL P++
Sbjct: 459 TKMGKVSKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWTNAFTVFEDVIKDGLKPDV 518

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
             YN ++K +   G ++ A     EM+K++      T+  I+HGF   GE++RA  +FD 
Sbjct: 519 VLYNNIIKAFCGMGNMDRAIHMVKEMQKKRHRPTSRTFMPIIHGFARAGEMRRALEIFDM 578

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M   G +P+V T+NA++  L +K  +E A+ + +EM   G  P+  TY  ++ G    G+
Sbjct: 579 MRRSGCIPTVHTFNALVLGLVEKRQMEKAVEILDEMALAGVSPDEHTYTTIMNGYAALGD 638

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
             +A E+  +++++  E +V TY  L++  C +G ++  L +  +M +     N   YNI
Sbjct: 639 TGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTREMSAQNIPRNTFVYNI 698

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           LI     R    D+  A  L+ +M   G  P   T+   +N     G+   A + ++   
Sbjct: 699 LIDGWARR---GDVWEAADLMQQMKQEGVQPDIHTYTSFINACCKAGDMLRATKTIQEME 755

Query: 483 RCGRLP 488
             G  P
Sbjct: 756 ALGVKP 761



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/389 (23%), Positives = 189/389 (48%), Gaps = 16/389 (4%)

Query: 95  YHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKA 154
           +H     S  +F   +D   +  +++ V +   R+K     P ++ F ++   Y   G  
Sbjct: 265 WHEEREGSTKAFRKVLD--TQPENWQAVVSAFERIKK----PARREFGLMVGYYARRGDM 318

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVI 213
            RA + F SM   G   S + + +++      + +E+A +  +  + +  +  +++Y+++
Sbjct: 319 HRARQTFESMRVRGIYPSSHVYTSLIHAYAVGRDMEEALSCVRKMKEEGVEMSLVTYSIV 378

Query: 214 ANGWCLVKRTN------KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
             G+  +   +      +A  +++EM + G++  +  Y+ ++ GY   G  E+    F  
Sbjct: 379 VGGFAKIGNADQSCNMDRAESLVREMEEEGIDAPIDIYHTMMNGYTMIGNEEKCLIVFKR 438

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           +K+      V++Y  +++ +  +G++ +A  V   M + G+  ++ TY+ +I    K   
Sbjct: 439 LKECGFAPSVISYGCLINMYTKMGKVSKALEVSKMMESAGIKHNMKTYSMLINGFLKLKD 498

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
             NA  VFE+++  G  P+   YN +I+  C  G M+RA+  V  M+     P  +T+  
Sbjct: 499 WTNAFTVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKKRHRPTSRTFMP 558

Query: 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447
           +I  F  AGE+ R LE+F+ M    C+P + T+N L+  +  +++ +    A ++L EM 
Sbjct: 559 IIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRQMEK---AVEILDEMA 615

Query: 448 DRGFMPRKFTFNRVLNGLLLIGNQGLAKE 476
             G  P + T+  ++NG   +G+ G A E
Sbjct: 616 LAGVSPDEHTYTTIMNGYAALGDTGKAFE 644



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 171/375 (45%), Gaps = 39/375 (10%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           R+K     P+  ++  +   Y   GK  +A+++   M   G + ++ +++ +++   K K
Sbjct: 438 RLKECGFAPSVISYGCLINMYTKMGKVSKALEVSKMMESAGIKHNMKTYSMLINGFLKLK 497

Query: 188 KVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
               A+ +F+ V +   K DV+ YN I   +C +   ++A+ ++KEM  +   P   T+ 
Sbjct: 498 DWTNAFTVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKKRHRPTSRTFM 557

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKC------------------------EI------- 275
            ++ G+ RAG++  A   F  M++  C                        EI       
Sbjct: 558 PIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRQMEKAVEILDEMALA 617

Query: 276 ----DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
               D  TYTTI++G+  +G+  +A   F  + N G+   V TY A+++  CK   +++A
Sbjct: 618 GVSPDEHTYTTIMNGYAALGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSA 677

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
           + V  EM  +    N+  YN++I G    G++  A + + +MK +  +P++ TY   I  
Sbjct: 678 LAVTREMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDIHTYTSFINA 737

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
            C AG++ R  +  ++M +    PN+ TY  LI         +  L   +   EM   G 
Sbjct: 738 CCKAGDMLRATKTIQEMEALGVKPNVKTYTTLIHGWACASLPEKAL---RCFEEMKLAGL 794

Query: 452 MPRKFTFNRVLNGLL 466
            P K  ++ ++  LL
Sbjct: 795 KPDKAVYHCLMTSLL 809



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 153/331 (46%), Gaps = 1/331 (0%)

Query: 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           H+  ++   I+   +L+D+   +T+   +    L P    +  I + +   G  DRA+ +
Sbjct: 481 HNMKTYSMLINGFLKLKDWTNAFTVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHM 540

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCL 219
              M +   R +  +F  I+    +  ++ +A  +F + R       V ++N +  G   
Sbjct: 541 VKEMQKKRHRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVE 600

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
            ++  KA+E+L EM   G++P+  TY  ++ GY   G   +A+ +F +++    E+DV T
Sbjct: 601 KRQMEKAVEILDEMALAGVSPDEHTYTTIMNGYAALGDTGKAFEYFTKLRNEGLELDVFT 660

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y  ++      G ++ A  V   M    +  +   YN +I    ++  V  A  + ++M 
Sbjct: 661 YEALLKACCKSGRMQSALAVTREMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMK 720

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            +G  P+  TY   I   C  G+M RA + +  M+    +PNV+TY  LI  +  A   E
Sbjct: 721 QEGVQPDIHTYTSFINACCKAGDMLRATKTIQEMEALGVKPNVKTYTTLIHGWACASLPE 780

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
           + L  FE+M      P+   Y+ L++S+  R
Sbjct: 781 KALRCFEEMKLAGLKPDKAVYHCLMTSLLSR 811



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 120/283 (42%), Gaps = 36/283 (12%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           +V  M+     PT +TF  I   +  AG+  RA++IF  M   GC  ++++FN ++  L 
Sbjct: 540 MVKEMQKKRHRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLV 599

Query: 185 KEKKVEKA-----------------------------------YNLFKVFRGK-FKADVI 208
           +++++EKA                                   +  F   R +  + DV 
Sbjct: 600 EKRQMEKAVEILDEMALAGVSPDEHTYTTIMNGYAALGDTGKAFEYFTKLRNEGLELDVF 659

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           +Y  +    C   R   AL V +EM  + +  N   YNI++ G+ R G + EA     +M
Sbjct: 660 TYEALLKACCKSGRMQSALAVTREMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQM 719

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
           K+   + D+ TYT+ ++     G++ RA      M   GV P+V TY  +I         
Sbjct: 720 KQEGVQPDIHTYTSFINACCKAGDMLRATKTIQEMEALGVKPNVKTYTTLIHGWACASLP 779

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
           E A+  FEEM   G  P+   Y+ ++  L     +  A  + G
Sbjct: 780 EKALRCFEEMKLAGLKPDKAVYHCLMTSLLSRATVAEAYIYSG 822



 Score = 46.6 bits (109), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 70/179 (39%), Gaps = 32/179 (17%)

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           P+   +  M+    ++  +  A   FE M  +G  P+S  Y  +I       +ME AL  
Sbjct: 300 PARREFGLMVGYYARRGDMHRARQTFESMRVRGIYPSSHVYTSLIHAYAVGRDMEEALSC 359

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
           V +MK++  E ++ TY+I++  F   G  ++               N+D           
Sbjct: 360 VRKMKEEGVEMSLVTYSIVVGGFAKIGNADQSC-------------NMDR---------- 396

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
                    A  L+ EM + G       ++ ++NG  +IGN+     + +    CG  P
Sbjct: 397 ---------AESLVREMEEEGIDAPIDIYHTMMNGYTMIGNEEKCLIVFKRLKECGFAP 446


>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
          Length = 612

 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 168/358 (46%), Gaps = 10/358 (2%)

Query: 111 DLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCR 170
           DL  RL      +     +    + P  + F ++    + +GK   A  +F  M   G +
Sbjct: 215 DLMNRLPSVPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQ 274

Query: 171 QSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEV 229
            ++ +FNT++  +CK   +  A  L  +  +     DV +Y     G C   R   A+E+
Sbjct: 275 PTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEM 334

Query: 230 LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289
            +EM +RGLNPN      ++  + + G +        EM  R  + D+V Y  +V+GF  
Sbjct: 335 FEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCR 394

Query: 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
           V ++K A ++ + M   G+ P   TY  +I   CK+  ++ A+ + +EM  +G   +  T
Sbjct: 395 VRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVT 454

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
           Y  +I GL   G    A   +  M +   +P+  TY ++I  FC  G+++ G +  ++M 
Sbjct: 455 YTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQ 514

Query: 410 SGVCLPNLDTYNILIS---SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           +    P + TYN++++   S+   K +D LL A      M++ G  P   T+N +L+G
Sbjct: 515 NKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNA------MLNIGVCPNDITYNILLDG 566



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 149/330 (45%), Gaps = 5/330 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +F+  +    +  D      L   M    + P   T+    +     G+   A+++F  M
Sbjct: 279 TFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEM 338

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNL-FKVFRGKFKADVISYNVIANGWCLVKRT 223
            E G   +     T++D  CKE  V     L +++     KAD+++YN + NG+C V+  
Sbjct: 339 CERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDM 398

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
             A ++++EM   GL P+  TY  ++ G  + G+++ A     EM      +D VTYT +
Sbjct: 399 KAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTAL 458

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G    G    A  +   M+  G+ P   TY  +I   CK   V+      +EM  KG 
Sbjct: 459 ISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGK 518

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            P   TYNVV+ G C  G+M+ A   +  M +    PN  TYNIL+   C  G++    E
Sbjct: 519 NPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILLDGHCKHGKVRDTEE 578

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
           L    G    + +   Y  LI+  FV+KKS
Sbjct: 579 LKSAKG---MVSDFGVYTSLINE-FVKKKS 604



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 153/338 (45%), Gaps = 6/338 (1%)

Query: 156 RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIA 214
            A   +L + + G       FN ++  + +  K+  A N+F ++ R   +  V+++N + 
Sbjct: 225 EAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLM 284

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
           +G C     N A  +   M   G+ P++ TY   ++G  + G+I++A   F EM +R   
Sbjct: 285 SGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLN 344

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
            + V  TT++      G++     +   M   GV   +  YNA++   C+   ++ A  +
Sbjct: 345 PNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDI 404

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
            EEM   G  P+  TY  +I G C  GE++ A+E    M D+    +  TY  LI     
Sbjct: 405 VEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSK 464

Query: 395 AG-EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
           AG  ++    L E M +G+  P+  TY ++I +     K+ D+    K L EM ++G  P
Sbjct: 465 AGRSVDAERILCEMMEAGL-QPDNTTYTMVIDAFC---KNGDVKTGFKHLKEMQNKGKNP 520

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
              T+N V+NG   +G    A  +L      G  P   
Sbjct: 521 GIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDI 558


>gi|414587035|tpg|DAA37606.1| TPA: hypothetical protein ZEAMMB73_100135 [Zea mays]
          Length = 547

 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 152/296 (51%), Gaps = 3/296 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   +F ++ +     G   +A+++   M E GC     + N ++D LC+ K+V K + +
Sbjct: 213 PDVWSFNVVIKGVCRMGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNKGHEV 272

Query: 196 FKVFR--GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
            +  +  G    + ++Y  + +G+C   +   A+ V  +M++ G  PN  TYN+++ GY 
Sbjct: 273 LRRLQRDGVCMPNAVTYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYG 332

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
           +A  +E A R + ++  R C  DVVT+++++ G+   G++  A+ ++  M    + P+V 
Sbjct: 333 KALDMESAVRMYRQLILRHCPPDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVY 392

Query: 314 TYNAMIQVLCKKDSVENAILVFEEM-VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
           T++ +I  LCK++    A+ +  E+ +     P +  YN VI  LC  G+++ A   V  
Sbjct: 393 TFSIIIHSLCKQNRSAEALDILRELNMRTDIAPQTFIYNPVIDILCKGGKVDEANLIVTD 452

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
           MK+  C P+  TY ILI   C  G I   + LF KM    C P+  T N  +S + 
Sbjct: 453 MKEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVEAGCRPDNITVNSFVSCVL 508



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 175/365 (47%), Gaps = 8/365 (2%)

Query: 132 LSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEK 191
           LS+ P+++++  +      +G+   A+K+F  M +         F + +   C    +  
Sbjct: 102 LSVPPSEQSYIHVIAFLCRSGRHRDALKLFDQMMDQSGYLPEAGFFSFVAGSCTNAGLLD 161

Query: 192 AYN--LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL-NPNLTTYNIV 248
           A +  L K  R     +  +YN + N      R   A+ + +  +  GL +P++ ++N+V
Sbjct: 162 AASTLLTKGSRLGCCIEPYAYNYLLNSLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVV 221

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           +KG  R G  ++A      M +  C  D +T+  +V G     ++ +   V   +   GV
Sbjct: 222 IKGVCRMGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNKGHEVLRRLQRDGV 281

Query: 309 -LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
            +P+  TY ++I   CK   +E+A+ V+ +M+  G  PN+ TYNV+I G     +ME A+
Sbjct: 282 CMPNAVTYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAV 341

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
               ++    C P+V T++ LI  +C  G+++    ++++MG     PN+ T++I+I S+
Sbjct: 342 RMYRQLILRHCPPDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSIIIHSL 401

Query: 428 FVRKKSDDLLVAGKLLIEMVDR-GFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGR 486
             + +S + L    +L E+  R    P+ F +N V++ L   G    A  I+      G 
Sbjct: 402 CKQNRSAEAL---DILRELNMRTDIAPQTFIYNPVIDILCKGGKVDEANLIVTDMKEKGC 458

Query: 487 LPRQF 491
            P ++
Sbjct: 459 HPDKY 463



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 7/178 (3%)

Query: 92  ILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSA 151
           IL + P    + SS         +L D + +W     M    + P   TF+II       
Sbjct: 348 ILRHCPPDVVTFSSLIDGYCRCGQLDDAKRIWK---EMGLHHIQPNVYTFSIIIHSLCKQ 404

Query: 152 GKADRAVKIF--LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVI 208
            ++  A+ I   L+M      Q+   +N ++D+LCK  KV++A  +    + K    D  
Sbjct: 405 NRSAEALDILRELNMRTDIAPQTF-IYNPVIDILCKGGKVDEANLIVTDMKEKGCHPDKY 463

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266
           +Y ++  G C+  R  +A+ +  +MV+ G  P+  T N  +    +AG   E  +  L
Sbjct: 464 TYTILIIGHCMKGRIPEAITLFHKMVEAGCRPDNITVNSFVSCVLKAGMPNEVDQIML 521


>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
 gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
          Length = 728

 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 124/437 (28%), Positives = 205/437 (46%), Gaps = 51/437 (11%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDH------AIDLAARLRDYR--TVWTLVHRMKSLSLGPT 137
           +LH+   L  HP   ++P S  H       I + A +   R      + +RMK L + PT
Sbjct: 102 SLHY---LLLHPQKTNNPVSCLHISKPLLDISIGAYVACGRPHQAAQIFNRMKRLGMQPT 158

Query: 138 QKTFAIIAE---RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN 194
             T   +     R+ S+     +  +F    + G + + NSFN ++   C E +  +A  
Sbjct: 159 LLTCNTLLNALVRFPSSHSIRLSKAVFTDFIKIGVKINTNSFNILIHGSCMENRFGEAIR 218

Query: 195 LFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
           +    R      D I+YN I +G C   R N+A ++L +M ++GL PN TT+NI++ G  
Sbjct: 219 VLGKMRDYGCPPDNITYNTILDGLCKKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCC 278

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
           R G ++EA      M +     D  TY  ++ GF   G I  A  + + M N  + P V 
Sbjct: 279 RLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVV 338

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           TYN +I    +  S E    + EEM G+G  PNS TYNV+++     G+M+   + V +M
Sbjct: 339 TYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKM 398

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG-SGVCLPNLDTYNILISSMFVRKK 432
           ++  C P++ TYN LI + C  G+++    L ++MG  G+ + ++ T N ++ ++   +K
Sbjct: 399 EESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDV-TLNTMLRALCRERK 457

Query: 433 SD---DLLVA-------------GKLLI----------------EMVDRGFMPRKFTFNR 460
            D   DLL +             G L+I                EM ++  +P   T+N 
Sbjct: 458 LDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNS 517

Query: 461 VLNGLLLIG--NQGLAK 475
           ++ GL  +G  NQ + K
Sbjct: 518 MIAGLCQMGKTNQAIDK 534



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 183/368 (49%), Gaps = 4/368 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L   M++L L P   T+  +       G ++   K+   M   G + +  ++N ++    
Sbjct: 324 LREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFV 383

Query: 185 KEKKVEKA-YNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K+ K+++    + K+       D+++YN + +  C V + ++A  ++ EM  +GL  +  
Sbjct: 384 KKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDV 443

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           T N +L+   R  +++EA       ++R   +D V+Y T++ G+    +  +A  ++D M
Sbjct: 444 TLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEM 503

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
               ++PS+ TYN+MI  LC+      AI   +E++  G +P+  TYN +I G C  G++
Sbjct: 504 KEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQV 563

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           E+A +F  +M +   +P+V T N L+   C  G +E+ L+LF    S     +  +YN +
Sbjct: 564 EKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTI 623

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I S+   K+  +   A  LL EM ++   P  +T+N +L GL   G    A+E +   + 
Sbjct: 624 ILSLCKEKRFGE---AFDLLEEMEEKKLGPDCYTYNAILGGLTDAGRMKDAEEFISKIAE 680

Query: 484 CGRLPRQF 491
            G+   QF
Sbjct: 681 KGKSENQF 688


>gi|224056220|ref|XP_002298762.1| predicted protein [Populus trichocarpa]
 gi|222846020|gb|EEE83567.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 180/365 (49%), Gaps = 12/365 (3%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           MKS+   P + T+  + + Y  + +   A+++   M  +GC  S+ ++N+++    ++  
Sbjct: 130 MKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYARDGL 189

Query: 189 VEKAYNL-FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           +++A  L  ++  G    DV +Y  + +G+    +   A+ V  EM   G  PN+ T+N 
Sbjct: 190 LKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNA 249

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           ++K +   G+  E  + F E+K   C  D+VT+ T++  FG  G       VF  M   G
Sbjct: 250 LIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAG 309

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
            +P   TYN +I    +  S + A+ +++ M+  G  P+ +TYN V+  L   G  E++ 
Sbjct: 310 FVPERDTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSE 369

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           +    MKD  C+PN  TY  L+  + +  EI R L L E++ SGV  P    + +L+ ++
Sbjct: 370 KIFAEMKDGRCKPNELTYCSLLHAYANGKEIGRMLALAEEICSGVIEP----HAVLLKTL 425

Query: 428 FVRKKSDDLLVAGKL-LIEMVDRGFMPRKFTFNRVLNGLLLIGNQGL---AKEILRLQSR 483
            +     DLLV  ++  +E+  +GF P   T N +L+   + G + +     EIL   + 
Sbjct: 426 VLVNSKCDLLVEAEVAFLELKRKGFSPDLSTLNAMLS---IYGRRQMFTKTNEILNFMNE 482

Query: 484 CGRLP 488
            G  P
Sbjct: 483 SGFTP 487



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 155/322 (48%), Gaps = 11/322 (3%)

Query: 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADV 207
           VS G+   AV +F  M E GC+ +L ++N IL++     K+   +N  K +F G   A V
Sbjct: 44  VSNGRYREAVMVFKKMEEEGCKPTLITYNVILNVY---GKMGMPWNKIKGLFEGMKNAGV 100

Query: 208 I----SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
           +    +YN +           +A  V K+M   G  P+  TYN +L  Y ++ + +EA  
Sbjct: 101 LPDEYTYNTLITCCRRGSLHEEAAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAME 160

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
              EM+   C   +VTY +++  +   G +K A  + + MV GG+   V TY  ++    
Sbjct: 161 VLREMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFV 220

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
           +    E+A+ VF EM   G  PN  T+N +I+   + G+    ++    +K+  C P++ 
Sbjct: 221 RAGKDESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIV 280

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
           T+N L+  F   G       +F++M     +P  DTYN LIS+ + R  S D   A  + 
Sbjct: 281 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISA-YSRCGSFDQ--AMDIY 337

Query: 444 IEMVDRGFMPRKFTFNRVLNGL 465
             M++ G  P   T+N VL  L
Sbjct: 338 KRMLEAGITPDLSTYNAVLAAL 359



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 163/349 (46%), Gaps = 5/349 (1%)

Query: 142 AIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG 201
           A+I       GK   A  +   +H+ G    + ++ +++       +  +A  +FK    
Sbjct: 2   AVIISMLGKEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEE 61

Query: 202 K-FKADVISYNVIANGWCLVKRT-NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
           +  K  +I+YNVI N +  +    NK   + + M + G+ P+  TYN ++    R    E
Sbjct: 62  EGCKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHE 121

Query: 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319
           EA   F +MK      D VTY  ++  +G     K A  V   M   G  PS+ TYN++I
Sbjct: 122 EAAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLI 181

Query: 320 QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
               +   ++ A+ +  +MV  G   +  TY  ++ G    G+ E A+     M+   C+
Sbjct: 182 SAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCK 241

Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA 439
           PN+ T+N LI+   + G+    +++FE++ +  C+P++ T+N L++     +   D  V+
Sbjct: 242 PNICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLA--VFGQNGMDSEVS 299

Query: 440 GKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           G +  EM   GF+P + T+N +++     G+   A +I +     G  P
Sbjct: 300 G-VFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRMLEAGITP 347



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 169/375 (45%), Gaps = 43/375 (11%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
            M++    P   TF  + + + + GK    +K+F  +    C   + ++NT+L +  +  
Sbjct: 234 EMRAAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNG 293

Query: 188 KVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
              +   +FK   R  F  +  +YN + + +      ++A+++ K M++ G+ P+L+TYN
Sbjct: 294 MDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYN 353

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR----ARNVFDG 302
            VL    R G  E++ + F EMK  +C+ + +TY +++H +    EI R    A  +  G
Sbjct: 354 AVLAALARGGLWEQSEKIFAEMKDGRCKPNELTYCSLLHAYANGKEIGRMLALAEEICSG 413

Query: 303 MVN-------------------------------GGVLPSVATYNAMIQVLCKKD--SVE 329
           ++                                 G  P ++T NAM+ +  ++   +  
Sbjct: 414 VIEPHAVLLKTLVLVNSKCDLLVEAEVAFLELKRKGFSPDLSTLNAMLSIYGRRQMFTKT 473

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
           N IL F  M   G+ P+  TYN ++     +   ER+ E +  +     +P+  +YN +I
Sbjct: 474 NEILNF--MNESGFTPSLATYNSLMYMHSRSENFERSEEVLKEILAKGIKPDTISYNTVI 531

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
             +C  G ++    +F +M     +P++ TYN  ++S       +D +    ++  M+  
Sbjct: 532 FAYCRNGRMKEASRIFSEMRESGLVPDVITYNTFVASYAADSMFEDAI---DVVRYMIKH 588

Query: 450 GFMPRKFTFNRVLNG 464
           G  P + T+N V++G
Sbjct: 589 GCKPNQNTYNSVVDG 603



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 145/318 (45%), Gaps = 1/318 (0%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
           V  +   MK     P + T+  +   Y   G  D+A+ I+  M E G    L+++N +L 
Sbjct: 298 VSGVFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLA 357

Query: 182 LLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
            L +    E++  +F   + G+ K + ++Y  + + +   K   + L + +E+    + P
Sbjct: 358 ALARGGLWEQSEKIFAEMKDGRCKPNELTYCSLLHAYANGKEIGRMLALAEEICSGVIEP 417

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           +      ++    +   + EA   FLE+K++    D+ T   ++  +G      +   + 
Sbjct: 418 HAVLLKTLVLVNSKCDLLVEAEVAFLELKRKGFSPDLSTLNAMLSIYGRRQMFTKTNEIL 477

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           + M   G  PS+ATYN+++ +  + ++ E +  V +E++ KG  P++ +YN VI   C  
Sbjct: 478 NFMNESGFTPSLATYNSLMYMHSRSENFERSEEVLKEILAKGIKPDTISYNTVIFAYCRN 537

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420
           G M+ A      M++    P+V TYN  +  +      E  +++   M    C PN +TY
Sbjct: 538 GRMKEASRIFSEMRESGLVPDVITYNTFVASYAADSMFEDAIDVVRYMIKHGCKPNQNTY 597

Query: 421 NILISSMFVRKKSDDLLV 438
           N ++         DD ++
Sbjct: 598 NSVVDGYCKHNHRDDAIM 615



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 127/311 (40%), Gaps = 43/311 (13%)

Query: 105 SFDHAIDLAAR---------LRDYRTVWTLVHR-------------MKSLSLGPTQKTFA 142
           SFD A+D+  R         L  Y  V   + R             MK     P + T+ 
Sbjct: 329 SFDQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCKPNELTYC 388

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCR----------QSLNSFNTILDLLCKEKKVEKA 192
            +   Y +  +  R     L++ E  C           ++L   N+  DLL     VE  
Sbjct: 389 SLLHAYANGKEIGR----MLALAEEICSGVIEPHAVLLKTLVLVNSKCDLL-----VEAE 439

Query: 193 YNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
               ++ R  F  D+ + N + + +   +   K  E+L  M + G  P+L TYN ++  +
Sbjct: 440 VAFLELKRKGFSPDLSTLNAMLSIYGRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMH 499

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
            R+   E +     E+  +  + D ++Y T++  +   G +K A  +F  M   G++P V
Sbjct: 500 SRSENFERSEEVLKEILAKGIKPDTISYNTVIFAYCRNGRMKEASRIFSEMRESGLVPDV 559

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            TYN  +         E+AI V   M+  G  PN  TYN V+ G C     + A+ F+  
Sbjct: 560 ITYNTFVASYAADSMFEDAIDVVRYMIKHGCKPNQNTYNSVVDGYCKHNHRDDAIMFISS 619

Query: 373 MKDDECEPNVQ 383
           +   E +P++ 
Sbjct: 620 LH--ELDPHIS 628



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/162 (20%), Positives = 73/162 (45%), Gaps = 1/162 (0%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           S+ +  + +  R + +     +++ M      P+  T+  +   +  +   +R+ ++   
Sbjct: 455 STLNAMLSIYGRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSRSENFERSEEVLKE 514

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKR 222
           +   G +    S+NT++   C+  ++++A  +F   R      DVI+YN     +     
Sbjct: 515 ILAKGIKPDTISYNTVIFAYCRNGRMKEASRIFSEMRESGLVPDVITYNTFVASYAADSM 574

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
              A++V++ M+  G  PN  TYN V+ GY +    ++A  F
Sbjct: 575 FEDAIDVVRYMIKHGCKPNQNTYNSVVDGYCKHNHRDDAIMF 616


>gi|224139118|ref|XP_002326772.1| predicted protein [Populus trichocarpa]
 gi|222834094|gb|EEE72571.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 121/454 (26%), Positives = 213/454 (46%), Gaps = 17/454 (3%)

Query: 5   LRKPPKNHLHFFCIYRGLSPLTTTSPAPLPPAAADPAALASLILTS---TDPRTLTQTLH 61
           L+K    + H F I + L      SP      + +   +A +I        P   T T H
Sbjct: 7   LKKTHSTNHHLFQIPKRL--FVALSPTATSTQSIEVERIARIINDHPFPNQPLHPTLTHH 64

Query: 62  CPSLHWTPQLVDQIIKRLW---NHALKALHFFNI-LSYHPTYAHSPSSFDHAIDLAARLR 117
            P    T   V+ ++ RL+   ++ LKAL FF   L+    ++ SP SF+  + + AR+R
Sbjct: 65  IPPTLLTTAFVENVLGRLFAAHSNGLKALEFFKYSLNNQTHFSPSPDSFEKTLHILARMR 124

Query: 118 DYRTVWTLVHRM-KSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH---GCRQSL 173
            +   W L+  + K+     T K+ +I+  +       +  +  F  M +    G +  +
Sbjct: 125 YFDKAWDLMVEIGKTHPFLLTLKSMSIMLCKIAKFRSYEETLDAFEKMEKRVFVGRKFGV 184

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVL-KE 232
             FN +L   C  +K+++A ++F     +F  +V + N++  G+    R   A+E+   E
Sbjct: 185 EEFNVLLRAFCTVRKLKEAKSVFVKMHERFPPNVKTMNILLLGF-KESRDVTAMELFYHE 243

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           MV RG  P+ ++Y I +  Y + G   +A R F EM++  C   + T TT++HG GV   
Sbjct: 244 MVKRGFKPSSSSYGIRIDAYCKKGYFADALRIFEEMERANCLPTLETVTTLIHGAGVARN 303

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
             +AR +FD +    +      YNA+I  L K   V++AI + +EM       +  TY+ 
Sbjct: 304 AMKARELFDEIPKRNLQADTGAYNALISSLVKCREVKSAIQLMDEMEKNNIHYDDMTYHT 363

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GSG 411
           +  GL  +G +E   E   +M D    P  +T  +L+++FC   +I+ GL L+  + G G
Sbjct: 364 MFLGLMKSGSIEGVCELYHKMIDRNFVPKTRTVVMLMKFFCVNSQIDLGLNLWGYLVGKG 423

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
            C P+    ++L++ +  R +S +     K  +E
Sbjct: 424 YC-PHHHALDLLVTGLCSRGRSHEAFKCSKQSLE 456



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/289 (18%), Positives = 113/289 (39%), Gaps = 36/289 (12%)

Query: 117 RDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSF 176
           RD   +    H M      P+  ++ I  + Y   G    A++IF  M    C  +L + 
Sbjct: 232 RDVTAMELFYHEMVKRGFKPSSSSYGIRIDAYCKKGYFADALRIFEEMERANCLPTLETV 291

Query: 177 NTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235
            T++      +   KA  LF ++ +   +AD  +YN + +     +    A++++ EM  
Sbjct: 292 TTLIHGAGVARNAMKARELFDEIPKRNLQADTGAYNALISSLVKCREVKSAIQLMDEMEK 351

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
             ++ +  TY+ +  G  ++G IE             CE+                    
Sbjct: 352 NNIHYDDMTYHTMFLGLMKSGSIEGV-----------CEL-------------------- 380

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
               +  M++   +P   T   +++  C    ++  + ++  +VGKGY P+    ++++ 
Sbjct: 381 ----YHKMIDRNFVPKTRTVVMLMKFFCVNSQIDLGLNLWGYLVGKGYCPHHHALDLLVT 436

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           GLC  G    A +   +  +     +   Y +L R+   +   ++  EL
Sbjct: 437 GLCSRGRSHEAFKCSKQSLERGIHVSEAVYGMLERFLLQSNMTDKLGEL 485



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 11/127 (8%)

Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
           +ME+ + FVGR      +  V+ +N+L+R FC   +++    +F KM      PN+ T N
Sbjct: 171 KMEKRV-FVGR------KFGVEEFNVLLRAFCTVRKLKEAKSVFVKMHERFP-PNVKTMN 222

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481
           IL+      K+S D+        EMV RGF P   ++   ++     G    A  I    
Sbjct: 223 ILLLGF---KESRDVTAMELFYHEMVKRGFKPSSSSYGIRIDAYCKKGYFADALRIFEEM 279

Query: 482 SRCGRLP 488
            R   LP
Sbjct: 280 ERANCLP 286


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 113/435 (25%), Positives = 194/435 (44%), Gaps = 41/435 (9%)

Query: 81  NHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQ 138
           N + +AL   ++++       +P   S+   I+   +  D    ++  H M    + P  
Sbjct: 172 NRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDV 231

Query: 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV 198
            T++ I          D+A+++  +M ++G   +  ++N+IL   C  ++ ++A    K 
Sbjct: 232 VTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKK 291

Query: 199 FRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
            R    + DV++YN + +  C   R+ +A ++   M  RGL P++ TY  +L+GY   G 
Sbjct: 292 MRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGA 351

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           + E       M +     D   +  ++  +    ++  A  VF  M   G+ P+V TY A
Sbjct: 352 LVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGA 411

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV------- 370
           +I +LCK  SV++A+L FE+M+ +G  PN   Y  +I  LC   + ++A E +       
Sbjct: 412 VIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRG 471

Query: 371 ------------------GRMKDDE----------CEPNVQTYNILIRYFCDAGEIERGL 402
                             GR+ + E           +PNV TY+ LI  +C AG+++   
Sbjct: 472 ICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEAT 531

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           +L   M S    P+  TYN LI+      + DD L    L  EMV  G  P   T+N +L
Sbjct: 532 KLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALA---LFKEMVSSGVSPNIITYNIIL 588

Query: 463 NGLLLIGNQGLAKEI 477
            GL        AKE+
Sbjct: 589 QGLFHTRRTAAAKEL 603



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/381 (27%), Positives = 182/381 (47%), Gaps = 7/381 (1%)

Query: 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH---G 168
           L A  R    +  ++ RM  LS  P   +  I+ +      ++  A+++   M +    G
Sbjct: 132 LCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGG 191

Query: 169 CRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKAL 227
               + S+ T+++   KE   +KAY+ + ++   +   DV++Y+ I    C  +  +KA+
Sbjct: 192 SAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAM 251

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
           EVL  MV  G+ PN  TYN +L GY  + Q +EA  F  +M+    E DVVTY +++   
Sbjct: 252 EVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYL 311

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
              G    AR +FD M   G+ P +ATY  ++Q    K ++     + + MV  G  P+ 
Sbjct: 312 CKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDH 371

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
             +N++I       +++ A+    +M+     PNV TY  +I   C +G ++  +  FE+
Sbjct: 372 HVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQ 431

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467
           M      PN+  Y  LI S+ +  K D    A +L++EM+DRG       FN +++    
Sbjct: 432 MIDEGLTPNIIVYTSLIHSLCIFDKWDK---AEELILEMLDRGICLNTIFFNSIIHSHCK 488

Query: 468 IGNQGLAKEILRLQSRCGRLP 488
            G    ++++  L  R G  P
Sbjct: 489 EGRVIESEKLFDLMVRIGVKP 509



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 179/362 (49%), Gaps = 8/362 (2%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
            + +M+S  + P   T+  + +     G++  A KIF SM + G    + ++ T+L    
Sbjct: 288 FLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYA 347

Query: 185 KEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            +  + + + L  +  R     D   +N++   +   ++ ++A+ V  +M   GLNPN+ 
Sbjct: 348 TKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVV 407

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY  V+    ++G +++A  +F +M       +++ YT+++H   +  +  +A  +   M
Sbjct: 408 TYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEM 467

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           ++ G+  +   +N++I   CK+  V  +  +F+ MV  G  PN  TY+ +I G C  G+M
Sbjct: 468 LDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKM 527

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A + +  M     +P+  TYN LI  +C    ++  L LF++M S    PN+ TYNI+
Sbjct: 528 DEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNII 587

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL-QS 482
           +  +F  +++     A +L + +   G      T+N +L+GL       L  E LR+ Q+
Sbjct: 588 LQGLFHTRRT---AAAKELYVGITKSGTQLELSTYNIILHGLC---KNNLTDEALRMFQN 641

Query: 483 RC 484
            C
Sbjct: 642 LC 643



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 158/340 (46%), Gaps = 8/340 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           PT  T+ I+      AG+ D       ++ + G R    +F  +L  LC +K+   A ++
Sbjct: 85  PTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDI 144

Query: 196 F--KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR---GLNPNLTTYNIVLK 250
              ++       DV S  ++  G C   R+ +ALE+L  M D    G  P++ +Y  V+ 
Sbjct: 145 VLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVIN 204

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
           G+F+ G  ++A+  + EM  R+   DVVTY++I+        + +A  V   MV  GV+P
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMP 264

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           +  TYN+++   C  +  + AI   ++M   G  P+  TYN ++  LC  G    A +  
Sbjct: 265 NCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIF 324

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
             M     EP++ TY  L++ +   G +     L + M      P+   +NILI +   +
Sbjct: 325 DSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQ 384

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
           +K D+ ++   +  +M   G  P   T+  V+  L   G+
Sbjct: 385 EKVDEAML---VFSKMRQHGLNPNVVTYGAVIGILCKSGS 421



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 134/279 (48%), Gaps = 1/279 (0%)

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYN 211
           K D+A ++ L M + G   +   FN+I+   CKE +V ++  LF +  R   K +VI+Y+
Sbjct: 456 KWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYS 515

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
            + +G+CL  + ++A ++L  M   G+ P+  TYN ++ GY R  ++++A   F EM   
Sbjct: 516 TLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSS 575

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
               +++TY  I+ G         A+ ++ G+   G    ++TYN ++  LCK +  + A
Sbjct: 576 GVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEA 635

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
           + +F+ +        + T+N++I  L   G  + A +       +   PN  TY ++   
Sbjct: 636 LRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAEN 695

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
               G +E   +LF  M    C  +    N ++  +  R
Sbjct: 696 IIGQGLLEELDQLFFSMEDNGCTVDSGMLNFIVRELLQR 734



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 125/262 (47%), Gaps = 1/262 (0%)

Query: 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VF 199
           F  I   +   G+   + K+F  M   G + ++ +++T++D  C   K+++A  L   +F
Sbjct: 479 FNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMF 538

Query: 200 RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
               K D ++YN + NG+C V R + AL + KEMV  G++PN+ TYNI+L+G F   +  
Sbjct: 539 SVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTA 598

Query: 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319
            A   ++ + K   ++++ TY  I+HG         A  +F  +    +     T+N MI
Sbjct: 599 AAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMI 658

Query: 320 QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
             L K    + A  +F      G +PN  TY ++   +   G +E   +    M+D+ C 
Sbjct: 659 GALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFFSMEDNGCT 718

Query: 380 PNVQTYNILIRYFCDAGEIERG 401
            +    N ++R     GEI R 
Sbjct: 719 VDSGMLNFIVRELLQRGEITRA 740



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 112/255 (43%), Gaps = 7/255 (2%)

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
           + P + TY I++    RAG+++  +     + K+   ++ +T+T ++ G         A 
Sbjct: 83  VTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAM 142

Query: 298 N-VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV---GKGYMPNSTTYNVV 353
           + V   M     +P V +   +++ LC ++  + A+ +   M    G G  P+  +Y  V
Sbjct: 143 DIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTV 202

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           I G    G+ ++A      M D    P+V TY+ +I   C    +++ +E+   M     
Sbjct: 203 INGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGV 262

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGL 473
           +PN  TYN ++      ++  +   A   L +M   G  P   T+N +++ L   G    
Sbjct: 263 MPNCMTYNSILHGYCSSEQPKE---AIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTE 319

Query: 474 AKEILRLQSRCGRLP 488
           A++I    ++ G  P
Sbjct: 320 ARKIFDSMTKRGLEP 334



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 7/187 (3%)

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
           G V P+V TY  +I   C+   ++        +V KG+   + T+  +++GLC       
Sbjct: 81  GKVTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSD 140

Query: 366 ALEFV-GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS---GVCLPNLDTYN 421
           A++ V  RM +  C P+V +  IL++  CD    +  LEL   M     G   P++ +Y 
Sbjct: 141 AMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYT 200

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481
            +I+  F    SD    A     EM+DR   P   T++ ++  L        A E+L   
Sbjct: 201 TVINGFFKEGDSDK---AYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTM 257

Query: 482 SRCGRLP 488
            + G +P
Sbjct: 258 VKNGVMP 264


>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
 gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 170/349 (48%), Gaps = 6/349 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
            F+  +    R++ Y TV +L   M+   +     T +I+   +      D    +F   
Sbjct: 42  EFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLSILINCFCFLHHVDYGFSVFGKT 101

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA--DVISYNVIANGWCLVKR 222
            + G +  +  F T++D +C+  K E A  L K   G      DV++ N +  G+C   +
Sbjct: 102 LKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEM-GLVGCVPDVVTCNSLMRGYCSQGK 160

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
            +K  ++   MV +GL P++ +Y+I + GY +  +I+EA   F EM  R    + VTY T
Sbjct: 161 IDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNT 220

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           ++         + A+ +F  M   G+ P +  Y+ ++   CK+ +++  +++F+EM  + 
Sbjct: 221 LIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRL 280

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
             P+   Y ++I G+C + +++ A E + R+  +  +P+V TY  L+   C  G I   L
Sbjct: 281 VKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEAL 340

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
            LF KM    C+P   +YN+L+       + +D     +L+ EM DRGF
Sbjct: 341 RLFRKMEEDGCMPGSCSYNVLLQGCL---QHNDTSTVVQLIHEMADRGF 386



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 167/339 (49%), Gaps = 6/339 (1%)

Query: 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVIS 209
           G  D A+  F  M +   +  +  FN +L  + + KK E   +LFK   FRG  K +V +
Sbjct: 19  GNLDDALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRG-IKYNVCT 77

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
            +++ N +C +   +    V  + + RG  P++  +  ++ G  R G+ E A     EM 
Sbjct: 78  LSILINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMG 137

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
              C  DVVT  +++ G+   G+I + R +F  MV+ G+ P V +Y+  I   CK + ++
Sbjct: 138 LVGCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKID 197

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
            A+ +F+EM  +G +PN+ TYN +I+ LC       A     +M      P++  Y+ L+
Sbjct: 198 EAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLL 257

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
             FC  G ++  L LF++M   +  P+L  Y I+I+ M   +K  D   A ++L  ++  
Sbjct: 258 DGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKD---AKEVLSRLIVE 314

Query: 450 GFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           G  P   T+  +++GL   G+   A  + R     G +P
Sbjct: 315 GLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMP 353



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 109/229 (47%), Gaps = 1/229 (0%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
           V  + H M S  L P   +++I    Y    K D A+++F  M   G   +  ++NT++ 
Sbjct: 164 VRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTLIK 223

Query: 182 LLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
            LC+  +   A  LF K+       D+++Y+ + +G+C     ++ L + +EM  R + P
Sbjct: 224 ALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKP 283

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           +L  Y I++ G  R+ ++++A      +     + DV TYT +V G    G I  A  +F
Sbjct: 284 DLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLF 343

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
             M   G +P   +YN ++Q   + +     + +  EM  +G+  ++ T
Sbjct: 344 RKMEEDGCMPGSCSYNVLLQGCLQHNDTSTVVQLIHEMADRGFYADAVT 392



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 113/239 (47%), Gaps = 5/239 (2%)

Query: 250 KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
           KGYF  G +++A   F  M  R  +  ++ +  ++     + + +   ++F  M   G+ 
Sbjct: 15  KGYF--GNLDDALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIK 72

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
            +V T + +I   C    V+    VF + + +G+ P+   +  +I G+C  G+ E A   
Sbjct: 73  YNVCTLSILINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGL 132

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
           +  M    C P+V T N L+R +C  G+I++  ++F  M S    P++ +Y+I I+    
Sbjct: 133 LKEMGLVGCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCK 192

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            +K D+   A +L  EM  RG +P   T+N ++  L        A+ + R    CG  P
Sbjct: 193 VEKIDE---AMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSP 248



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 90/200 (45%), Gaps = 6/200 (3%)

Query: 85  KALHFFNILSYHPTY--AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           +A+  F+ +S+      A + ++   A+  A R RD + ++    +M +  L P    ++
Sbjct: 198 EAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLF---RKMCACGLSPDILAYS 254

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRG 201
            + + +   G  D  + +F  M     +  L  +  I++ +C+ +KV+ A   L ++   
Sbjct: 255 TLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVE 314

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
             K DV +Y  + +G C      +AL + ++M + G  P   +YN++L+G  +       
Sbjct: 315 GLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQGCLQHNDTSTV 374

Query: 262 WRFFLEMKKRKCEIDVVTYT 281
            +   EM  R    D VT T
Sbjct: 375 VQLIHEMADRGFYADAVTRT 394


>gi|242067351|ref|XP_002448952.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
 gi|241934795|gb|EES07940.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
          Length = 455

 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 172/370 (46%), Gaps = 9/370 (2%)

Query: 85  KALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           KA+  FN +  H     SP   S+   ID   +L          ++M +  + P    F+
Sbjct: 48  KAMDIFNKMRQHGL---SPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFS 104

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG- 201
            +     S  K ++  ++F  M   G   ++  FNTIL  LCKE +V +   L       
Sbjct: 105 SLVYGLCSIDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECM 164

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
             + DVISYN + +G CL    ++A ++L+ MV  GL PN  +YN +L GY +AG+I+ A
Sbjct: 165 GVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPNSFSYNTLLHGYCKAGRIDSA 224

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
           +  F +M        VVTY TI+HG         A+ ++  M+N G    + TYN ++  
Sbjct: 225 YSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWGIYTYNTILNG 284

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           LCK + V+ A  +F+ +  KG   N  T+ ++I  L   G  E A++    +  +   P+
Sbjct: 285 LCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPD 344

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
           V TY ++     + G +E    LF  M      PN    N L+  +  R    D+  AG 
Sbjct: 345 VVTYRVVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHR---GDISRAGA 401

Query: 442 LLIEMVDRGF 451
            L ++ +R F
Sbjct: 402 YLSKLDERNF 411



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 170/367 (46%), Gaps = 4/367 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L++ M +  + P    F I    Y   G  D+A+ IF  M +HG      S+  ++D LC
Sbjct: 17  LLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGALIDALC 76

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  +V+ A   F ++       +++ ++ +  G C + +  K  E+  EM++ G++PN+ 
Sbjct: 77  KLGRVDDAEVKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVEELFFEMLNVGIHPNIV 136

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            +N +L    + G++ E  R    ++      DV++Y T++ G  + G I  A  + +GM
Sbjct: 137 FFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGM 196

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           V+ G+ P+  +YN ++   CK   +++A  +F +M+  G  P   TYN ++ GL  T   
Sbjct: 197 VSVGLKPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKRF 256

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             A E    M +   +  + TYN ++   C +  ++   ++F+ + S     N+ T+ I+
Sbjct: 257 SEAKELYLNMINSGTKWGIYTYNTILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIM 316

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           I ++    + +D   A  L   +   G +P   T+  V   L+  G+      +     +
Sbjct: 317 IGALLKGGRKED---AMDLFAAIPANGLVPDVVTYRVVAENLIEEGSLEEFDSLFSAMEK 373

Query: 484 CGRLPRQ 490
            G  P  
Sbjct: 374 NGTAPNS 380



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 138/269 (51%), Gaps = 1/269 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           LV  ++ + + P   ++  + + +  AG  D A K+   M   G + +  S+NT+L   C
Sbjct: 157 LVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPNSFSYNTLLHGYC 216

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  +++ AY+LF K+        V++YN I +G    KR ++A E+   M++ G    + 
Sbjct: 217 KAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWGIY 276

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYN +L G  ++  ++EA++ F  +  +  +++++T+T ++      G  + A ++F  +
Sbjct: 277 TYNTILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAI 336

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G++P V TY  + + L ++ S+E    +F  M   G  PNS   N ++R L H G++
Sbjct: 337 PANGLVPDVVTYRVVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDI 396

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYF 392
            RA  ++ ++ +        T ++LI  F
Sbjct: 397 SRAGAYLSKLDERNFSVEASTTSMLISIF 425



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 119/250 (47%), Gaps = 3/250 (1%)

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
           ++L  MV  G++PN   +NI    Y + G I++A   F +M++     D V+Y  ++   
Sbjct: 16  DLLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGALIDAL 75

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
             +G +  A   F+ M+N GV P++  +++++  LC  D  E    +F EM+  G  PN 
Sbjct: 76  CKLGRVDDAEVKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVEELFFEMLNVGIHPNI 135

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
             +N ++  LC  G +      V  ++     P+V +YN LI   C AG I+   +L E 
Sbjct: 136 VFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEG 195

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467
           M S    PN  +YN L+       + D    A  L  +M+  G  P   T+N +L+GL  
Sbjct: 196 MVSVGLKPNSFSYNTLLHGYCKAGRIDS---AYSLFRKMLSNGITPGVVTYNTILHGLFQ 252

Query: 468 IGNQGLAKEI 477
                 AKE+
Sbjct: 253 TKRFSEAKEL 262



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 104/241 (43%), Gaps = 3/241 (1%)

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           +L GY   G + E       M       +   +      +   G I +A ++F+ M   G
Sbjct: 1   MLHGYGNKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHG 60

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           + P   +Y A+I  LCK   V++A + F +M+ +G  PN   ++ ++ GLC   + E+  
Sbjct: 61  LSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVE 120

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
           E    M +    PN+  +N ++   C  G +  G  L + +      P++ +YN LI   
Sbjct: 121 ELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGH 180

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
            +    D+   A KLL  MV  G  P  F++N +L+G    G    A  + R     G  
Sbjct: 181 CLAGTIDE---ASKLLEGMVSVGLKPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGIT 237

Query: 488 P 488
           P
Sbjct: 238 P 238


>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
 gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
 gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 180/348 (51%), Gaps = 13/348 (3%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M+S    P+   + ++ +     G   R  K+  +M   GC  +  ++NT++  LC
Sbjct: 244 LLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLC 303

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            + K++KA +L  ++   K   + ++Y  + NG    +R   A+ +L  M +RG + N  
Sbjct: 304 LKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQH 363

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            Y++++ G F+ G+ EEA   + +M ++ C+ ++V Y+ +V G    G+   A+ + + M
Sbjct: 364 IYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRM 423

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           +  G LP+  TY+++++   K    E A+ V++EM   G   N   Y+V+I GLC  G +
Sbjct: 424 IASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRV 483

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC------LPNL 417
           + A+    +M     +P+   Y+ +I+  C  G ++  L+L+ +M   +C       P++
Sbjct: 484 KEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEM---LCQEEPKSQPDV 540

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            TYNIL+  + ++K   D+  A  LL  M+DRG  P   T N  LN L
Sbjct: 541 VTYNILLDGLCMQK---DISRAVDLLNSMLDRGCDPDVITCNTFLNTL 585



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 186/389 (47%), Gaps = 12/389 (3%)

Query: 98  TYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRA 157
           ++    S+    I+  A   D+ +V  L+ R++  +    +++F ++   Y  A   D+A
Sbjct: 72  SFKLGDSTLSSMIESYANSGDFDSVEKLLSRIRLENRVIIERSFIVVFRAYGKAHLPDKA 131

Query: 158 VKIFLSM-HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADV----ISYN 211
           V +F  M  E  C++S+ SFN++L+++  E    +    +  V       ++    +S+N
Sbjct: 132 VDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFN 191

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
           ++    C ++  ++A+EV + M +R   P+  TY  ++ G  +  +I+EA     EM+  
Sbjct: 192 LVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSE 251

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
            C    V Y  ++ G    G++ R   + D M   G +P+  TYN +I  LC K  ++ A
Sbjct: 252 GCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKA 311

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
           + + E MV    +PN  TY  +I GL        A+  +  M++     N   Y++LI  
Sbjct: 312 VSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISG 371

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
               G+ E  + L+ KM    C PN+  Y++L+  +    K ++   A ++L  M+  G 
Sbjct: 372 LFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNE---AKEILNRMIASGC 428

Query: 452 MPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           +P  +T++ ++ G       GL +E +++
Sbjct: 429 LPNAYTYSSLMKGFF---KTGLCEEAVQV 454



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 134/304 (44%), Gaps = 60/304 (19%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M+       Q  ++++       GKA+ A+ ++  M E GC+ ++  ++ ++D LC
Sbjct: 349 LLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLC 408

Query: 185 KEKK----------------VEKAYNLFKVFRGKFKADVIS------------------- 209
           +E K                +  AY    + +G FK  +                     
Sbjct: 409 REGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKF 468

Query: 210 -YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
            Y+V+ +G C V R  +A+ V  +M+  G+ P+   Y+ ++KG    G ++ A + + EM
Sbjct: 469 CYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEM 528

Query: 269 ---KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
              ++ K + DVVTY  ++ G  +  +I RA ++ + M++ G  P V T N  +  L +K
Sbjct: 529 LCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEK 588

Query: 326 DS---------------------VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
            +                     V  A  + E M+GK   P ++T+ +++R +C   ++ 
Sbjct: 589 SNSCDKGRSFLEELVVRLLKRQRVSGACTIVEVMLGKYLAPKTSTWAMIVREICKPKKIN 648

Query: 365 RALE 368
            A++
Sbjct: 649 AAID 652


>gi|224135613|ref|XP_002322117.1| predicted protein [Populus trichocarpa]
 gi|222869113|gb|EEF06244.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 194/409 (47%), Gaps = 43/409 (10%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
            F  A+D   ++ D   V  +  RM +  + P   + +I+ + +   G+   A  +F+ +
Sbjct: 379 GFSSAMDAYVKIGDLGRVIQIYKRMLNEGISPNVVSCSILIKGFCQNGRILEACGLFVQI 438

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRT 223
            + G   S+ +++ ++   CK   +   + L++ + + + + D I Y+V+ NG C     
Sbjct: 439 LKLGFEPSILTYSALIAGFCKSGNLRDGFYLYEDMIKKRCEPDTIVYSVLINGLCKQGLV 498

Query: 224 NKALEVLKEMVDRGLNPNL-----------------------------------TTYNIV 248
             AL    + V+RGL+PN+                                    TY I+
Sbjct: 499 GDALRFFFQAVNRGLSPNVFTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIKADTVTYTIL 558

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           +KG  + G+++EA   F +M K+  + DV+TY T++ G   + +      +FD M    V
Sbjct: 559 IKGAAQFGRVDEALMLFFQMLKKDFKPDVITYCTLIDGLCKLKKSSAGLCIFDFMCKNAV 618

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
            P +A YN +I +  ++  +E A+ +F  +V +G  P+  T+N +I   C+   ++ A++
Sbjct: 619 APDIAIYNVLINMHSREGHLEAALGLFVHVVERGPKPDVFTFNTMICCYCNFKRLDDAVQ 678

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
              +M  ++  PN  T+ ILI  FC  G ++  + +F KM      PNL TY+ LI   F
Sbjct: 679 LFAKMTSEQLRPNAITFTILIDAFCREGRMDDAMLMFSKMLEEGPEPNLVTYSCLIHGYF 738

Query: 429 VRKKSDDLLVAG-KLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKE 476
              KS  ++ +G KL  EM++    P   +++ +++GL     +GL KE
Sbjct: 739 ---KSQSMMESGLKLYNEMLENNIAPNIVSYSILIDGLC---KRGLMKE 781



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 90/393 (22%), Positives = 180/393 (45%), Gaps = 42/393 (10%)

Query: 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAI---IAERYVSAGKADRAVKIFLSMHEHG 168
           L   L D   V  +V +   L     ++ F++   +  R+++ G+ +  ++   ++ + G
Sbjct: 208 LLGSLIDSHCVEVIVDKYGELCSAMREQPFSVYEFVMNRFMNKGEVEMGLRFHKALVQGG 267

Query: 169 CRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKAL 227
               + + N IL  +  +  +  A + F  V R   K +V++++ + + +C     +KA 
Sbjct: 268 FGLDIITCNKILKGIWMQNDIGVADDYFNMVVRIGPKPNVVTFSTLIDAYCKEGNLDKAF 327

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
            +   M   G+ P+L  Y+I++ G F+AG++E+  R  L    +  ++DVV +++ +  +
Sbjct: 328 VLFDVMAGNGVTPDLIVYSILIDGLFKAGRLEDGQRLLLVALDKGIKLDVVGFSSAMDAY 387

Query: 288 GVVGEIKRARNVFDGMVNGGVLP-----------------------------------SV 312
             +G++ R   ++  M+N G+ P                                   S+
Sbjct: 388 VKIGDLGRVIQIYKRMLNEGISPNVVSCSILIKGFCQNGRILEACGLFVQILKLGFEPSI 447

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            TY+A+I   CK  ++ +   ++E+M+ K   P++  Y+V+I GLC  G +  AL F  +
Sbjct: 448 LTYSALIAGFCKSGNLRDGFYLYEDMIKKRCEPDTIVYSVLINGLCKQGLVGDALRFFFQ 507

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
             +    PNV T N L+  FC    I   ++++  MG      +  TY ILI       +
Sbjct: 508 AVNRGLSPNVFTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIKADTVTYTILIKGAAQFGR 567

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            D+ L+   L  +M+ + F P   T+  +++GL
Sbjct: 568 VDEALM---LFFQMLKKDFKPDVITYCTLIDGL 597



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 148/311 (47%), Gaps = 4/311 (1%)

Query: 102 SPSSF--DHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           SP+ F  +  +D   RL+       + + M  L++     T+ I+ +     G+ D A+ 
Sbjct: 514 SPNVFTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIKADTVTYTILIKGAAQFGRVDEALM 573

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWC 218
           +F  M +   +  + ++ T++D LCK KK      +F    +     D+  YNV+ N   
Sbjct: 574 LFFQMLKKDFKPDVITYCTLIDGLCKLKKSSAGLCIFDFMCKNAVAPDIAIYNVLINMHS 633

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
                  AL +   +V+RG  P++ T+N ++  Y    ++++A + F +M   +   + +
Sbjct: 634 REGHLEAALGLFVHVVERGPKPDVFTFNTMICCYCNFKRLDDAVQLFAKMTSEQLRPNAI 693

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV-ENAILVFEE 337
           T+T ++  F   G +  A  +F  M+  G  P++ TY+ +I    K  S+ E+ + ++ E
Sbjct: 694 TFTILIDAFCREGRMDDAMLMFSKMLEEGPEPNLVTYSCLIHGYFKSQSMMESGLKLYNE 753

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M+     PN  +Y+++I GLC  G M+ A        D    P+V  Y ILIR +C  G 
Sbjct: 754 MLENNIAPNIVSYSILIDGLCKRGLMKEASCAFRCALDKHLLPDVIAYTILIRGYCKVGR 813

Query: 398 IERGLELFEKM 408
           +   + L++ M
Sbjct: 814 LTEAMMLYDNM 824



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/384 (22%), Positives = 160/384 (41%), Gaps = 39/384 (10%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS-- 175
           DY T+         L        +  + E Y   G  D++V IF+ +   G   S N   
Sbjct: 147 DYDTLDAFRDGFCDLDSTNHSVVYGFLIESYCRKGMFDKSVDIFMHVCVKGIFVSPNVVY 206

Query: 176 --FNTILDLLCKEKKVEKAYNL--------FKVF------------------------RG 201
               +++D  C E  V+K   L        F V+                        +G
Sbjct: 207 LLLGSLIDSHCVEVIVDKYGELCSAMREQPFSVYEFVMNRFMNKGEVEMGLRFHKALVQG 266

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
            F  D+I+ N I  G  +      A +    +V  G  PN+ T++ ++  Y + G +++A
Sbjct: 267 GFGLDIITCNKILKGIWMQNDIGVADDYFNMVVRIGPKPNVVTFSTLIDAYCKEGNLDKA 326

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
           +  F  M       D++ Y+ ++ G    G ++  + +    ++ G+   V  +++ +  
Sbjct: 327 FVLFDVMAGNGVTPDLIVYSILIDGLFKAGRLEDGQRLLLVALDKGIKLDVVGFSSAMDA 386

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
             K   +   I +++ M+ +G  PN  + +++I+G C  G +  A     ++     EP+
Sbjct: 387 YVKIGDLGRVIQIYKRMLNEGISPNVVSCSILIKGFCQNGRILEACGLFVQILKLGFEPS 446

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
           + TY+ LI  FC +G +  G  L+E M    C P+   Y++LI+ +  +    D L   +
Sbjct: 447 ILTYSALIAGFCKSGNLRDGFYLYEDMIKKRCEPDTIVYSVLINGLCKQGLVGDAL---R 503

Query: 442 LLIEMVDRGFMPRKFTFNRVLNGL 465
              + V+RG  P  FT N +L+  
Sbjct: 504 FFFQAVNRGLSPNVFTLNTLLDSF 527


>gi|357498925|ref|XP_003619751.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494766|gb|AES75969.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 562

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 154/311 (49%), Gaps = 52/311 (16%)

Query: 176 FNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           +NTI+D +CK+K    A++L+ ++   +   DV +YN + NG+C+V +   A+ +  +M 
Sbjct: 244 YNTIIDSMCKDKLDNDAFDLYSEMVSKRIFPDVNTYNALINGFCIVGKLKDAIGLFNKMT 303

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
              +NP++ T+NI++  + + G+++EA      M K+  + DVVTY +++  + +V E+ 
Sbjct: 304 SENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDVVTYNSLMDRYCLVNEVN 363

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
           +A+++F+ M + GV  +V +Y+ MI   CK   V+ A+ +F+EM  K   PN  TY+ +I
Sbjct: 364 KAKSIFNTMSHRGVTANVRSYSIMINRFCKIKMVDQAMKLFKEMHHKQIFPNVITYSSLI 423

Query: 355 RGLCHTGEMERALEFVGRM----------------KDDECEPNVQTYNILIRYFCDAGEI 398
            GLC +G +  ALE    M                KD    PN+ TY ILI   C  G +
Sbjct: 424 DGLCKSGRISYALELNDEMHDRGQQPDIITLTRQLKDQGIRPNMFTYTILIDGLCKGGRL 483

Query: 399 ERGLELFE-----------------------------------KMGSGVCLPNLDTYNIL 423
           E    +FE                                   KM    C+PN  TY I+
Sbjct: 484 EDARNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEAMTLLSKMKDNCCIPNAVTYEII 543

Query: 424 ISSMFVRKKSD 434
           I S+F   ++D
Sbjct: 544 IRSLFDNDEND 554



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 158/319 (49%), Gaps = 17/319 (5%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           ++  ID   + +     + L   M S  + P   T+  +   +   GK   A+ +F  M 
Sbjct: 244 YNTIIDSMCKDKLDNDAFDLYSEMVSKRIFPDVNTYNALINGFCIVGKLKDAIGLFNKMT 303

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTN 224
                  + +FN ++D  CKE +V++A N L  + +   K DV++YN + + +CLV   N
Sbjct: 304 SENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDVVTYNSLMDRYCLVNEVN 363

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           KA  +   M  RG+  N+ +Y+I++  + +   +++A + F EM  ++   +V+TY++++
Sbjct: 364 KAKSIFNTMSHRGVTANVRSYSIMINRFCKIKMVDQAMKLFKEMHHKQIFPNVITYSSLI 423

Query: 285 HGFGVVGEIKRARNVFDGM----------------VNGGVLPSVATYNAMIQVLCKKDSV 328
            G    G I  A  + D M                 + G+ P++ TY  +I  LCK   +
Sbjct: 424 DGLCKSGRISYALELNDEMHDRGQQPDIITLTRQLKDQGIRPNMFTYTILIDGLCKGGRL 483

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           E+A  +FE+++ KGY     TY V+I G C+ G  + A+  + +MKD+ C PN  TY I+
Sbjct: 484 EDARNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEAMTLLSKMKDNCCIPNAVTYEII 543

Query: 389 IRYFCDAGEIERGLELFEK 407
           IR   D  E ++    F K
Sbjct: 544 IRSLFDNDENDKAENFFVK 562



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 121/236 (51%), Gaps = 3/236 (1%)

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
           L++L+ +  + L PNL  YN ++    +     +A+  + EM  ++   DV TY  +++G
Sbjct: 226 LQLLRRVDGKLLQPNLVMYNTIIDSMCKDKLDNDAFDLYSEMVSKRIFPDVNTYNALING 285

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
           F +VG++K A  +F+ M +  + P V T+N ++   CK+  V+ A      M+ +G  P+
Sbjct: 286 FCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPD 345

Query: 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
             TYN ++   C   E+ +A      M       NV++Y+I+I  FC    +++ ++LF+
Sbjct: 346 VVTYNSLMDRYCLVNEVNKAKSIFNTMSHRGVTANVRSYSIMINRFCKIKMVDQAMKLFK 405

Query: 407 KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           +M      PN+ TY+ LI  +    KS  +  A +L  EM DRG  P   T  R L
Sbjct: 406 EMHHKQIFPNVITYSSLIDGLC---KSGRISYALELNDEMHDRGQQPDIITLTRQL 458



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 108/229 (47%), Gaps = 22/229 (9%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  +D    + +     ++ + M    +    ++++I+  R+      D+A+K+F  M
Sbjct: 348 TYNSLMDRYCLVNEVNKAKSIFNTMSHRGVTANVRSYSIMINRFCKIKMVDQAMKLFKEM 407

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKR 222
           H      ++ ++++++D LCK  ++  A  L      RG+ + D+I+             
Sbjct: 408 HHKQIFPNVITYSSLIDGLCKSGRISYALELNDEMHDRGQ-QPDIIT------------- 453

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
                 + +++ D+G+ PN+ TY I++ G  + G++E+A   F ++  +   I V TYT 
Sbjct: 454 ------LTRQLKDQGIRPNMFTYTILIDGLCKGGRLEDARNIFEDLLVKGYNITVNTYTV 507

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
           ++HGF   G    A  +   M +   +P+  TY  +I+ L   D  + A
Sbjct: 508 MIHGFCNKGLFDEAMTLLSKMKDNCCIPNAVTYEIIIRSLFDNDENDKA 556



 Score = 39.7 bits (91), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
           L+L  ++   +  PNL  YN +I SM   K  +D   A  L  EMV +   P   T+N +
Sbjct: 226 LQLLRRVDGKLLQPNLVMYNTIIDSMCKDKLDND---AFDLYSEMVSKRIFPDVNTYNAL 282

Query: 462 LNGLLLIG 469
           +NG  ++G
Sbjct: 283 INGFCIVG 290


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 113/435 (25%), Positives = 194/435 (44%), Gaps = 41/435 (9%)

Query: 81  NHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQ 138
           N + +AL   ++++       +P   S+   I+   +  D    ++  H M    + P  
Sbjct: 172 NRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDV 231

Query: 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV 198
            T++ I          D+A+++  +M ++G   +  ++N+IL   C  ++ ++A    K 
Sbjct: 232 VTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKK 291

Query: 199 FRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
            R    + DV++YN + +  C   R+ +A ++   M  RGL P++ TY  +L+GY   G 
Sbjct: 292 MRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGA 351

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317
           + E       M +     D   +  ++  +    ++  A  VF  M   G+ P+V TY A
Sbjct: 352 LVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGA 411

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV------- 370
           +I +LCK  SV++A+L FE+M+ +G  PN   Y  +I  LC   + ++A E +       
Sbjct: 412 VIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRG 471

Query: 371 ------------------GRMKDDE----------CEPNVQTYNILIRYFCDAGEIERGL 402
                             GR+ + E           +PNV TY+ LI  +C AG+++   
Sbjct: 472 ICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEAT 531

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
           +L   M S    P+  TYN LI+      + DD L    L  EMV  G  P   T+N +L
Sbjct: 532 KLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALA---LFKEMVSSGVSPNIITYNIIL 588

Query: 463 NGLLLIGNQGLAKEI 477
            GL        AKE+
Sbjct: 589 QGLFHTRRTAAAKEL 603



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 105/381 (27%), Positives = 182/381 (47%), Gaps = 7/381 (1%)

Query: 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH---G 168
           L A  R    +  ++ RM  LS  P   +  I+ +      ++  A+++   M +    G
Sbjct: 132 LCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGG 191

Query: 169 CRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKAL 227
               + S+ T+++   KE   +KAY+ + ++   +   DV++Y+ I    C  +  +KA+
Sbjct: 192 SAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAM 251

Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
           EVL  MV  G+ PN  TYN +L GY  + Q +EA  F  +M+    E DVVTY +++   
Sbjct: 252 EVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYL 311

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
              G    AR +FD M   G+ P +ATY  ++Q    K ++     + + MV  G  P+ 
Sbjct: 312 CKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDH 371

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
             +N++I       +++ A+    +M+     PNV TY  +I   C +G ++  +  FE+
Sbjct: 372 HVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQ 431

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467
           M      PN+  Y  LI S+ +  K D    A +L++EM+DRG       FN +++    
Sbjct: 432 MIDEGLTPNIIVYTSLIHSLCIFDKWDK---AEELILEMLDRGICLNTIFFNSIIHSHCK 488

Query: 468 IGNQGLAKEILRLQSRCGRLP 488
            G    ++++  L  R G  P
Sbjct: 489 EGRVIESEKLFDLMVRIGVKP 509



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 178/359 (49%), Gaps = 8/359 (2%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           +M+S  + P   T+  + +     G++  A KIF SM + G    + ++ T+L     + 
Sbjct: 291 KMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKG 350

Query: 188 KVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
            + + + L  +  R     D   +N++   +   ++ ++A+ V  +M   GLNPN+ TY 
Sbjct: 351 ALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYG 410

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
            V+    ++G +++A  +F +M       +++ YT+++H   +  +  +A  +   M++ 
Sbjct: 411 AVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDR 470

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           G+  +   +N++I   CK+  V  +  +F+ MV  G  PN  TY+ +I G C  G+M+ A
Sbjct: 471 GICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEA 530

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
            + +  M     +P+  TYN LI  +C    ++  L LF++M S    PN+ TYNI++  
Sbjct: 531 TKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQG 590

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL-QSRC 484
           +F  +++     A +L + +   G      T+N +L+GL       L  E LR+ Q+ C
Sbjct: 591 LFHTRRT---AAAKELYVGITKSGTQLELSTYNIILHGLC---KNNLTDEALRMFQNLC 643



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 158/340 (46%), Gaps = 8/340 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           PT  T+ I+      AG+ D       ++ + G R    +F  +L  LC +K+   A ++
Sbjct: 85  PTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDI 144

Query: 196 F--KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR---GLNPNLTTYNIVLK 250
              ++       DV S  ++  G C   R+ +ALE+L  M D    G  P++ +Y  V+ 
Sbjct: 145 VLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVIN 204

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
           G+F+ G  ++A+  + EM  R+   DVVTY++I+        + +A  V   MV  GV+P
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMP 264

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           +  TYN+++   C  +  + AI   ++M   G  P+  TYN ++  LC  G    A +  
Sbjct: 265 NCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIF 324

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
             M     EP++ TY  L++ +   G +     L + M      P+   +NILI +   +
Sbjct: 325 DSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQ 384

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
           +K D+ ++   +  +M   G  P   T+  V+  L   G+
Sbjct: 385 EKVDEAML---VFSKMRQHGLNPNVVTYGAVIGILCKSGS 421



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 147/297 (49%), Gaps = 5/297 (1%)

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYN 211
           K D+A ++ L M + G   +   FN+I+   CKE +V ++  LF +  R   K +VI+Y+
Sbjct: 456 KWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYS 515

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
            + +G+CL  + ++A ++L  M   G+ P+  TYN ++ GY R  ++++A   F EM   
Sbjct: 516 TLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSS 575

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
               +++TY  I+ G         A+ ++ G+   G    ++TYN ++  LCK +  + A
Sbjct: 576 GVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEA 635

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
           + +F+ +        + T+N++I  L   G  + A +    +  +   P+V+TY+++   
Sbjct: 636 LRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAEN 695

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
             + G +E   +LF  M    C  N    N ++  +  R    D+  AG  L  M+D
Sbjct: 696 LIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRG---DITRAGTYL-SMID 748



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 125/261 (47%), Gaps = 1/261 (0%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M  + + P   T++ + + Y  AGK D A K+  SM   G +    ++NT+++  C+  +
Sbjct: 502 MVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSR 561

Query: 189 VEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNI 247
           ++ A  LFK +       ++I+YN+I  G    +RT  A E+   +   G    L+TYNI
Sbjct: 562 MDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNI 621

Query: 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307
           +L G  +    +EA R F  +     +++  T+  ++     VG    A+++F  +   G
Sbjct: 622 ILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANG 681

Query: 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
           ++P V TY+ M + L ++  +E    +F  M   G   NS   N ++R L   G++ RA 
Sbjct: 682 LVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAG 741

Query: 368 EFVGRMKDDECEPNVQTYNIL 388
            ++  + +        T ++L
Sbjct: 742 TYLSMIDEKHFSLEASTASLL 762



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 112/255 (43%), Gaps = 7/255 (2%)

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
           + P + TY I++    RAG+++  +     + K+   ++ +T+T ++ G         A 
Sbjct: 83  VTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAM 142

Query: 298 N-VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV---GKGYMPNSTTYNVV 353
           + V   M     +P V +   +++ LC ++  + A+ +   M    G G  P+  +Y  V
Sbjct: 143 DIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTV 202

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           I G    G+ ++A      M D    P+V TY+ +I   C    +++ +E+   M     
Sbjct: 203 INGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGV 262

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGL 473
           +PN  TYN ++      ++  + +     L +M   G  P   T+N +++ L   G    
Sbjct: 263 MPNCMTYNSILHGYCSSEQPKEAI---GFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTE 319

Query: 474 AKEILRLQSRCGRLP 488
           A++I    ++ G  P
Sbjct: 320 ARKIFDSMTKRGLEP 334



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 7/187 (3%)

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
           G V P+V TY  +I   C+   ++        +V KG+   + T+  +++GLC       
Sbjct: 81  GKVTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSD 140

Query: 366 ALEFV-GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS---GVCLPNLDTYN 421
           A++ V  RM +  C P+V +  IL++  CD    +  LEL   M     G   P++ +Y 
Sbjct: 141 AMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYT 200

Query: 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481
            +I+  F    SD    A     EM+DR   P   T++ ++  L        A E+L   
Sbjct: 201 TVINGFFKEGDSDK---AYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTM 257

Query: 482 SRCGRLP 488
            + G +P
Sbjct: 258 VKNGVMP 264


>gi|297848938|ref|XP_002892350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338192|gb|EFH68609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 493

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 184/362 (50%), Gaps = 6/362 (1%)

Query: 83  ALKALHFFNILSYHPTYAHS---PSSFDHAIDLAA--RLRDYRTVWTLVHRMKSLSLGPT 137
            L ++ F + L+     A S   PS  D +  L A  +L+ Y  V +L   ++ L +   
Sbjct: 48  GLHSIKFNDALTLFCDMAESRPLPSIVDFSRLLVAIAKLKKYEAVISLFRHIEILGISHD 107

Query: 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK 197
             +F+ + + +    +   A+     M + G   S+ +F ++++  C   ++++A +L  
Sbjct: 108 LYSFSTLIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVD 167

Query: 198 VFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256
              G  ++ +V+ YN I +  C  ++ + AL+VL  M   G+ P++ TYN ++   F +G
Sbjct: 168 QIVGLGYEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNSLITRLFHSG 227

Query: 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
           +   + R   +M +     DV+T++ ++  FG  G++  A+  +D M+   V P++ TYN
Sbjct: 228 KWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRSVDPNIVTYN 287

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
           ++I  LC    ++ A  V   MV KG+ PN+ TYN ++ G C +  ++ A++ +  M  D
Sbjct: 288 SLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHD 347

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
             + +  TYN L + +C AG+     ++  +M S   LP++ T+N+L+  +    K +  
Sbjct: 348 GVDGDTFTYNTLYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLLDGLCEHGKIEKA 407

Query: 437 LV 438
           LV
Sbjct: 408 LV 409



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 181/367 (49%), Gaps = 4/367 (1%)

Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           +H   SF   ID   R        + + +M  L   P+  TF  +   +    +   A+ 
Sbjct: 105 SHDLYSFSTLIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMS 164

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWC 218
           +   +   G   ++  +NTI+D LC+ ++V+ A ++   + +   + DVI+YN +     
Sbjct: 165 LVDQIVGLGYEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNSLITRLF 224

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
              +   +  +L +M+  G++P++ T++ ++  + + GQ+ EA + + EM +R  + ++V
Sbjct: 225 HSGKWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRSVDPNIV 284

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           TY ++++G  + G +  A+ V + MV+ G  P+  TYN ++   CK   V++A+ +   M
Sbjct: 285 TYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVM 344

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
              G   ++ TYN + +G C  G+   A + + RM      P++ T+N+L+   C+ G+I
Sbjct: 345 SHDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLLDGLCEHGKI 404

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           E+ L   E +     +  + TYNI+I  M    K +D   A  L   +  +G  P   T+
Sbjct: 405 EKALVKLEDLQKSETVVGIITYNIIIKGMCKANKVED---AWYLFCSLALKGVSPDVITY 461

Query: 459 NRVLNGL 465
             ++ GL
Sbjct: 462 TTMMIGL 468



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 153/337 (45%), Gaps = 4/337 (1%)

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYN 211
           K + A+ +F  M E     S+  F+ +L  + K KK E   +LF+         D+ S++
Sbjct: 53  KFNDALTLFCDMAESRPLPSIVDFSRLLVAIAKLKKYEAVISLFRHIEILGISHDLYSFS 112

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
            + + +C   R + AL  L +M+  G  P++ T+  ++ G+    +I+EA     ++   
Sbjct: 113 TLIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGL 172

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
             E +VV Y TI+       ++  A +V + M   G+ P V TYN++I  L        +
Sbjct: 173 GYEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNSLITRLFHSGKWGVS 232

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
             +  +M+  G  P+  T++ +I      G++  A +    M     +PN+ TYN LI  
Sbjct: 233 ARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRSVDPNIVTYNSLING 292

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
            C  G ++   ++   M S    PN  TYN L++     K+ DD   A K+L  M   G 
Sbjct: 293 LCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDD---AMKILCVMSHDGV 349

Query: 452 MPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
               FT+N +  G    G    A+++L     CG LP
Sbjct: 350 DGDTFTYNTLYQGYCQAGQFNAAEKVLARMVSCGVLP 386



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 128/255 (50%), Gaps = 3/255 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++  M  + + P   TF+ + + +   G+   A K +  M +     ++ ++N++++ LC
Sbjct: 235 ILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRSVDPNIVTYNSLINGLC 294

Query: 185 KEKKVEKAYNL--FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
               +++A  +  F V +G F  + ++YN + NG+C  KR + A+++L  M   G++ + 
Sbjct: 295 IHGLLDEAKKVLNFMVSKGFF-PNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDGVDGDT 353

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
            TYN + +GY +AGQ   A +    M       D+ T+  ++ G    G+I++A    + 
Sbjct: 354 FTYNTLYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLLDGLCEHGKIEKALVKLED 413

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           +     +  + TYN +I+ +CK + VE+A  +F  +  KG  P+  TY  ++ GL     
Sbjct: 414 LQKSETVVGIITYNIIIKGMCKANKVEDAWYLFCSLALKGVSPDVITYTTMMIGLRRKRL 473

Query: 363 MERALEFVGRMKDDE 377
              A E   +MK D+
Sbjct: 474 WLEAHELYRKMKKDD 488



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/278 (20%), Positives = 116/278 (41%), Gaps = 32/278 (11%)

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
           + Y   L+    + +  +A   F +M + +    +V ++ ++     + + +   ++F  
Sbjct: 39  SDYRERLRSGLHSIKFNDALTLFCDMAESRPLPSIVDFSRLLVAIAKLKKYEAVISLFRH 98

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           +   G+   + +++ +I   C+   +  A+    +M+  G+ P+  T+  ++ G CH   
Sbjct: 99  IEILGISHDLYSFSTLIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNR 158

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           ++ A+  V ++     EPNV  YN +I   C+  +++  L++   M      P++ TYN 
Sbjct: 159 IQEAMSLVDQIVGLGYEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNS 218

Query: 423 LISSMF--------------------------------VRKKSDDLLVAGKLLIEMVDRG 450
           LI+ +F                                V  K   LL A K   EM+ R 
Sbjct: 219 LITRLFHSGKWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRS 278

Query: 451 FMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             P   T+N ++NGL + G    AK++L      G  P
Sbjct: 279 VDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFP 316


>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g09680
 gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
 gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 607

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 177/356 (49%), Gaps = 4/356 (1%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           +D   +L    T+W     +           F I+  ++   G    A K+F  + +   
Sbjct: 212 LDRMMKLNPTGTIWGFYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSL 271

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNL-FKVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
           + ++ SFNT+++  CK   +++ + L  ++ + + + DV +Y+ + N  C   + + A  
Sbjct: 272 QPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHG 331

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           +  EM  RGL PN   +  ++ G+ R G+I+     + +M  +  + D+V Y T+V+GF 
Sbjct: 332 LFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFC 391

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
             G++  ARN+ DGM+  G+ P   TY  +I   C+   VE A+ + +EM   G   +  
Sbjct: 392 KNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRV 451

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            ++ ++ G+C  G +  A   +  M     +P+  TY +++  FC  G+ + G +L ++M
Sbjct: 452 GFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEM 511

Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
            S   +P++ TYN+L++ +    K   +  A  LL  M++ G +P   T+N +L G
Sbjct: 512 QSDGHVPSVVTYNVLLNGLC---KLGQMKNADMLLDAMLNIGVVPDDITYNTLLEG 564



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 153/317 (48%), Gaps = 10/317 (3%)

Query: 176 FNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           FN +++  CKE  +  A  +F ++ +   +  V+S+N + NG+C V   ++   +  +M 
Sbjct: 243 FNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQME 302

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
                P++ TY+ ++    +  +++ A   F EM KR    + V +TT++HG    GEI 
Sbjct: 303 KSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEID 362

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
             +  +  M++ G+ P +  YN ++   CK   +  A  + + M+ +G  P+  TY  +I
Sbjct: 363 LMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLI 422

Query: 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI---ERGLELFEKMGSG 411
            G C  G++E ALE    M  +  E +   ++ L+   C  G +   ER L   E + +G
Sbjct: 423 DGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALR--EMLRAG 480

Query: 412 VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
           +  P+  TY +++ +     K  D     KLL EM   G +P   T+N +LNGL  +G  
Sbjct: 481 I-KPDDVTYTMMMDAFC---KKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQM 536

Query: 472 GLAKEILRLQSRCGRLP 488
             A  +L      G +P
Sbjct: 537 KNADMLLDAMLNIGVVP 553



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 135/297 (45%), Gaps = 5/297 (1%)

Query: 94  SYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGK 153
           S  PT      SF+  I+   ++ +    + L H+M+     P   T++ +        K
Sbjct: 270 SLQPTVV----SFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENK 325

Query: 154 ADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNV 212
            D A  +F  M + G   +   F T++    +  +++     + K+     + D++ YN 
Sbjct: 326 MDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNT 385

Query: 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
           + NG+C       A  ++  M+ RGL P+  TY  ++ G+ R G +E A     EM +  
Sbjct: 386 LVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNG 445

Query: 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
            E+D V ++ +V G    G +  A      M+  G+ P   TY  M+   CKK   +   
Sbjct: 446 IELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGF 505

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
            + +EM   G++P+  TYNV++ GLC  G+M+ A   +  M +    P+  TYN L+
Sbjct: 506 KLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLL 562



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 80/189 (42%), Gaps = 4/189 (2%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID   R  D  T   +   M    +   +  F+ +       G+   A +    M   G 
Sbjct: 422 IDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGI 481

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALE 228
           +    ++  ++D  CK+   +  + L K  +       V++YNV+ NG C + +   A  
Sbjct: 482 KPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADM 541

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           +L  M++ G+ P+  TYN +L+G+ R      + + +++  +     D+ +Y +IV+   
Sbjct: 542 LLDAMLNIGVVPDDITYNTLLEGHHRHAN---SSKRYIQKPEIGIVADLASYKSIVNELD 598

Query: 289 VVGEIKRAR 297
              +  R R
Sbjct: 599 RASKDHRNR 607


>gi|115480461|ref|NP_001063824.1| Os09g0542800 [Oryza sativa Japonica Group]
 gi|32526676|dbj|BAC79199.1| chloroplast RNA processing 1 -like protein [Oryza sativa Japonica
           Group]
 gi|113632057|dbj|BAF25738.1| Os09g0542800 [Oryza sativa Japonica Group]
 gi|125606498|gb|EAZ45534.1| hypothetical protein OsJ_30195 [Oryza sativa Japonica Group]
 gi|215768653|dbj|BAH00882.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 543

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 180/382 (47%), Gaps = 7/382 (1%)

Query: 103 PSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFL 162
           P+ +   IDL A+   +     L+  M+  S+  + +    +  RYV A     A  +F 
Sbjct: 144 PALYAAMIDLLAKHHHFPLARHLLDEMRERSVPISAQLILALIRRYVRAEMPSEASDLFR 203

Query: 163 SMHEHGC-RQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVK 221
            M E+G       +  ++L  L K++   +A  +F  ++  F  DV+ Y  + + WC   
Sbjct: 204 RMEEYGAGAPDPATLASLLGALSKKRLASEAQAMFDSYKSVFTPDVVLYTTLVHAWCRSG 263

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
           R N+A  V  EM   G+ PN+ TY  V+   +RAGQ+  A     +M    C  +  T+ 
Sbjct: 264 RLNEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFN 323

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK--DSVENAILVFEEMV 339
            I+      G  ++   V + M   G  P + TYN +++  C K   +++ A+ +   M+
Sbjct: 324 AIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETHCGKGQSNLDAAMKMLTRMI 383

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            KG +P+  T+N +++ +   G +  A +   RM++ +C+PNV TYN+L+R F     ++
Sbjct: 384 AKGCIPDCHTFNPMLKLVLVLGNVNAARKLYERMQELQCKPNVVTYNLLMRLFNLEKSMD 443

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV-DRGFMPRKFTF 458
             L + + M +    PN++TY  LI +   R    +   A   L EMV ++   P K  +
Sbjct: 444 MVLRIKKDMDAQGVEPNVNTYAALIEAFCGR---GNWKRAHMTLREMVEEKALKPTKPVY 500

Query: 459 NRVLNGLLLIGNQGLAKEILRL 480
           + VL  L   G     +E++ +
Sbjct: 501 DMVLALLRKAGQLRRHEELVEM 522



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 129/276 (46%), Gaps = 7/276 (2%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           ++  HA   + RL +   V+     M+   + P   T+  + +    AG+  RA ++   
Sbjct: 253 TTLVHAWCRSGRLNEAERVFA---EMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQELLCQ 309

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKR 222
           M + GC  +  +FN I+    K  + E+   +    R    + D+I+YN +    C   +
Sbjct: 310 MIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETHCGKGQ 369

Query: 223 TN--KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280
           +N   A+++L  M+ +G  P+  T+N +LK     G +  A + +  M++ +C+ +VVTY
Sbjct: 370 SNLDAAMKMLTRMIAKGCIPDCHTFNPMLKLVLVLGNVNAARKLYERMQELQCKPNVVTY 429

Query: 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV- 339
             ++  F +   +     +   M   GV P+V TY A+I+  C + + + A +   EMV 
Sbjct: 430 NLLMRLFNLEKSMDMVLRIKKDMDAQGVEPNVNTYAALIEAFCGRGNWKRAHMTLREMVE 489

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
            K   P    Y++V+  L   G++ R  E V  M D
Sbjct: 490 EKALKPTKPVYDMVLALLRKAGQLRRHEELVEMMVD 525


>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
          Length = 1037

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 104/376 (27%), Positives = 176/376 (46%), Gaps = 16/376 (4%)

Query: 91  NILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVS 150
           NI++YH             I+    L D      ++  M    +     T+ ++ + Y  
Sbjct: 260 NIVTYHSL-----------INGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCK 308

Query: 151 AGKADRAVKIFLSMHEHGCR-QSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVI 208
             K D A K+   M E         ++  ++D  C+  K++ A  L  ++ R   K ++ 
Sbjct: 309 QCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLF 368

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
             N + NG+C     ++A  V+  MVD  L P+  +YN +L GY R G   EA+    +M
Sbjct: 369 ICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKM 428

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
            +   E  V+TY T++ G   VG    A  ++  M+  GV P    Y+ ++  L K ++ 
Sbjct: 429 LQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENF 488

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           E A  ++++++ +G+  +  T+N +I GLC  G+M  A E   +MKD  C P+  TY  L
Sbjct: 489 EGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTL 548

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           I  +C A  + +  ++   M      P+++ YN LIS +F   KS  L+    LL EM  
Sbjct: 549 IDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGLF---KSRRLVEXTDLLTEMGI 605

Query: 449 RGFMPRKFTFNRVLNG 464
           RG  P   T+  +++G
Sbjct: 606 RGLTPNIVTYGALIDG 621



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 115/480 (23%), Positives = 208/480 (43%), Gaps = 63/480 (13%)

Query: 67  WTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDY------- 119
           ++  +VD +++ L  +   +L FF  +S    +  +  S+   + + +R R Y       
Sbjct: 66  FSDDIVDAVLRNLRLNPTASLGFFQFVSKQQNFRPNVKSYCKLVHILSRGRMYDETRAYL 125

Query: 120 -------------RTVWT-LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
                          +W  LV   +  +  PT   F +I + YV  G    A+ +F +M 
Sbjct: 126 NQLVDLCKFKDRGNVIWDELVGVYREFAFSPT--VFDMILKVYVEKGLTKNALYVFDNMG 183

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTN 224
           + G   SL S N++L+ L K  +   A+ ++ ++ R     DV   +++ N +C   + +
Sbjct: 184 KCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVD 243

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           +A   +K+M + G+ PN+ TY+ ++ GY   G +E A      M ++    +VVTYT ++
Sbjct: 244 EAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLI 303

Query: 285 HG-----------------------------FGVV-------GEIKRARNVFDGMVNGGV 308
            G                             +GV+       G+I  A  + D M+  G+
Sbjct: 304 KGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGL 363

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
             ++   N++I   CK+  +  A  V   MV     P+S +YN ++ G C  G    A  
Sbjct: 364 KTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFN 423

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
              +M  +  EP V TYN L++  C  G  +  L+++  M      P+   Y+ L+  +F
Sbjct: 424 LCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLF 483

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
              K ++   A  L  +++ RGF   + TFN +++GL  +G    A+EI       G  P
Sbjct: 484 ---KMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSP 540



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 99/398 (24%), Positives = 173/398 (43%), Gaps = 68/398 (17%)

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           +  S  +F+  I    ++        +  +MK L   P   T+  + + Y  A    +A 
Sbjct: 503 FTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAF 562

Query: 159 KIFLSMHEHGCRQSLNSFNTIL-------------DLL---------------------- 183
           K+  +M       S+  +N+++             DLL                      
Sbjct: 563 KVKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGW 622

Query: 184 CKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG----- 237
           CKE  ++KA++  F++      A++I  + + +G   + R ++A  ++++MVD G     
Sbjct: 623 CKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDH 682

Query: 238 ---------------------------LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
                                      L PN   YNI + G  + G++++A RFF  +  
Sbjct: 683 ECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSL 742

Query: 271 RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
           +    D  TY T++HG+   G +  A  + D M+  G++P++ TYNA+I  LCK ++V+ 
Sbjct: 743 KGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDR 802

Query: 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390
           A  +F ++  KG  PN  TYN +I G C  G M+ A +   +M ++   P+V TY+ LI 
Sbjct: 803 AQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALIN 862

Query: 391 YFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
             C  G+IER ++L  +M        L  Y  L+   F
Sbjct: 863 GLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGGF 900



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 107/413 (25%), Positives = 184/413 (44%), Gaps = 44/413 (10%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           +D   ++ ++    TL   + +     ++ TF  +       GK   A +IF  M + GC
Sbjct: 479 LDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGC 538

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVIS-----YNVIANGWCLVKRTN 224
                ++ T++D  CK   V +A   FKV +G  + + IS     YN + +G    +R  
Sbjct: 539 SPDGITYRTLIDGYCKASNVGQA---FKV-KGAMEREXISPSIEMYNSLISGLFKSRRLV 594

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           +  ++L EM  RGL PN+ TY  ++ G+ + G +++A+  + EM +     +++  +T+V
Sbjct: 595 EXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMV 654

Query: 285 HGFGVVGEIKRARNVFDGMVNGG--------------------------------VLPSV 312
            G   +G I  A  +   MV+ G                                +LP+ 
Sbjct: 655 SGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNN 714

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
             YN  I  LCK   V++A   F  +  KG++P++ TY  +I G    G ++ A      
Sbjct: 715 IVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDE 774

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           M      PN+ TYN LI   C +  ++R   LF K+      PN+ TYN LI       K
Sbjct: 775 MLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYC---K 831

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
             ++  A KL  +M++ G  P   T++ ++NGL   G+   + ++L    + G
Sbjct: 832 IGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAG 884



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 161/362 (44%), Gaps = 39/362 (10%)

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
           +L P ++ + ++ + Y   GK D AV++   M   G + +L   N++++  CK  ++ +A
Sbjct: 327 ALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEA 386

Query: 193 YNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
             +  ++     K D  SYN + +G+C    T++A  +  +M+  G+ P + TYN +LKG
Sbjct: 387 EGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKG 446

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
             R G  ++A + +  M K     D V Y+T++ G   +   + A  ++  ++  G   S
Sbjct: 447 LCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKS 506

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
             T+N MI  LCK   +  A  +F++M   G  P+  TY  +I G C    + +A +  G
Sbjct: 507 RITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKG 566

Query: 372 RMKDDECEP-----------------------------------NVQTYNILIRYFCDAG 396
            M+ +   P                                   N+ TY  LI  +C  G
Sbjct: 567 AMEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEG 626

Query: 397 EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
            +++    + +M       N+   + ++S ++   + D+   A  L+ +MVD GF P   
Sbjct: 627 MLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDE---ANLLMQKMVDHGFFPDHE 683

Query: 457 TF 458
            F
Sbjct: 684 CF 685



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/392 (22%), Positives = 165/392 (42%), Gaps = 39/392 (9%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++ RM   +L P   ++  + + Y   G    A  +   M + G   ++ ++NT+L  LC
Sbjct: 389 VITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLC 448

Query: 185 KEKKVEKAYNLFKV-FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           +    + A  ++ +  +     D + Y+ + +G   ++    A  + K+++ RG   +  
Sbjct: 449 RVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRI 508

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           T+N ++ G  + G++ EA   F +MK   C  D +TY T++ G+     + +A  V   M
Sbjct: 509 TFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAM 568

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
               + PS+  YN++I  L K   +     +  EM  +G  PN  TY  +I G C  G +
Sbjct: 569 EREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGML 628

Query: 364 ERALEFVGRMKDDECEPN----------------VQTYNILIRYFCDAG----------- 396
           ++A      M ++    N                +   N+L++   D G           
Sbjct: 629 DKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKS 688

Query: 397 -----EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
                 I++  +  ++      LPN   YNI I+ +    K DD   A +    +  +GF
Sbjct: 689 DIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDD---ARRFFSMLSLKGF 745

Query: 452 MPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
           +P  FT+  +++G    GN     E  RL+  
Sbjct: 746 VPDNFTYCTLIHGYSAAGN---VDEAFRLRDE 774


>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
 gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 170/331 (51%), Gaps = 6/331 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   TF ++  R    GK   A  IF  + + G + +  SFNT+++  CK   +E+ + L
Sbjct: 230 PNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRL 289

Query: 196 FKVFRGKFKA--DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
            K+   +F+   DV +Y+ + +G C   +   A  + KEM DRGL PN  T+  ++ G  
Sbjct: 290 -KMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQC 348

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
           + G+++ A   + +M  +  + D+V Y T++ G    G  + AR     M   G++P   
Sbjct: 349 KNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKF 408

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           TY  ++   CK+  +E A+ + +EMV +G   ++  +  +I GLC  G++  A   +  M
Sbjct: 409 TYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREM 468

Query: 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKS 433
                +P+  TY +++  FC  G+++ G +L ++M S   +P + TYN+L++ +    K 
Sbjct: 469 LRAGLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLC---KQ 525

Query: 434 DDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
             +  A  LL  M++ G +P   T+N +L G
Sbjct: 526 GQVKNADMLLNAMLNLGVVPDDITYNILLQG 556



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 106/421 (25%), Positives = 193/421 (45%), Gaps = 23/421 (5%)

Query: 87  LHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSL-SLGPTQKTFAIIA 145
           L FF+ LS +PT++H+  S+   +      R  +   +L+H + S    G     FA I 
Sbjct: 94  LSFFDFLSSYPTFSHTVQSYCSMVHFLIAHRMNQQAESLLHFVVSRKGKGSASSVFASIL 153

Query: 146 ER----------------YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV 189
           E                 Y   G    A++ F    +H  +   N    +L+ + K    
Sbjct: 154 ETKGTLSSSFVFDALMSVYTEFGYVSDAIQCFRLTKKHNLKIPFNGCKCLLERMIKMSSP 213

Query: 190 EKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248
             A   + ++    +  +V ++NV+ N  C   +   A  +  E+   GL P   ++N +
Sbjct: 214 MVALEFYLEILDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTL 273

Query: 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
           + GY ++G +EE +R  + M++ +   DV TY+ ++ G     +++ A ++F  M + G+
Sbjct: 274 INGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGL 333

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
           +P+  T+  +I   CK   V+ A+ ++++M  KG   +   YN +I GLC  G    A +
Sbjct: 334 VPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARK 393

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISSM 427
           FVG M      P+  TY  L+   C  G++E  LE+ ++M   G+ L N+  +  +IS +
Sbjct: 394 FVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNV-AFTAIISGL 452

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
               K  D   A + L EM+  G  P   T+  V++G    G+  +  ++L+     G +
Sbjct: 453 CRDGKIVD---AERTLREMLRAGLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHI 509

Query: 488 P 488
           P
Sbjct: 510 P 510



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 71/158 (44%), Gaps = 4/158 (2%)

Query: 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR 200
           F  I       GK   A +    M   G +    ++  ++D  CK+  V+  + L K  +
Sbjct: 445 FTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQ 504

Query: 201 GKFK-ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
                  VI+YNV+ NG C   +   A  +L  M++ G+ P+  TYNI+L+G+ + G++ 
Sbjct: 505 SDGHIPGVITYNVLMNGLCKQGQVKNADMLLNAMLNLGVVPDDITYNILLQGHCKHGKLG 564

Query: 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
           +      EM       D  +Y +++H      + ++ R
Sbjct: 565 DFQNVKTEMGLVS---DYASYRSLLHELSKASKDRQKR 599


>gi|224075357|ref|XP_002304600.1| predicted protein [Populus trichocarpa]
 gi|222842032|gb|EEE79579.1| predicted protein [Populus trichocarpa]
          Length = 641

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 116/395 (29%), Positives = 186/395 (47%), Gaps = 47/395 (11%)

Query: 98  TYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRA 157
           +Y    S+F   ID  A L D++++  ++ RM+       +K F +I + Y  A   ++A
Sbjct: 55  SYKLGDSTFYSLIDNYANLGDFKSLEKVLDRMRCEKRVVVEKCFVVIFKAYGKAHLPEKA 114

Query: 158 VKIFLSM-HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG 216
           V +F  M +E  C++++ SFN++L+++ +E              G F   +  YN +   
Sbjct: 115 VGLFDRMAYEFECKRTVKSFNSVLNVIIQE--------------GLFYRALEFYNHVIGA 160

Query: 217 WCLVKRTNKALEVLKEMVDRGLN--PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
                              +G+N  PN+ T+N+V+K   + G +++A + F +M   KC+
Sbjct: 161 -------------------KGVNISPNVLTFNLVIKTMCKVGLVDDAVQMFRDMPVSKCQ 201

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
            DV TY T++ G      I  A ++ D M   G  PS  T+N +I  LCKK  +     +
Sbjct: 202 PDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKL 261

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
            + M  KG  PN  TYN +I GLC  G++E+A+  + RM   +C PNV TY  +I     
Sbjct: 262 VDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVK 321

Query: 395 AGEIERG---LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
            G    G   L L E+ G  V   N   Y+ LIS +F   KS +   A +L  EM  +  
Sbjct: 322 QGRALDGARVLALMEERGYHV---NEYVYSALISGLFKEGKSQE---AMQLFKEMTVKEC 375

Query: 452 MPRKFTFNRVLNGLLLIGNQGLAKEILR--LQSRC 484
                 ++ V++GL   G    A E+L     +RC
Sbjct: 376 ELNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRC 410



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 171/340 (50%), Gaps = 12/340 (3%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
           +L+  M+     P+  TF ++       G   R  K+  +M   GC  +  ++NT++  L
Sbjct: 225 SLLDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGL 284

Query: 184 CKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           C + K+EKA +L  ++   K   +V++Y  I NG     R      VL  M +RG + N 
Sbjct: 285 CLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEERGYHVNE 344

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
             Y+ ++ G F+ G+ +EA + F EM  ++CE++ + Y+ ++ G    G+   A  V   
Sbjct: 345 YVYSALISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEALEVLSE 404

Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
           M N    P+  TY+++++   +  +   AI ++++M    +  N   Y+V+I GLC  G+
Sbjct: 405 MTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSVLIHGLCKDGK 464

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC-----LPNL 417
           ++ A+    +M    C+P+V  Y  +I    +AG +E  L+L+ +M   +C      P++
Sbjct: 465 VKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNEM---LCQEPDSQPDV 521

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
            TYNIL++++    K   +  A  LL  M+DRG  P   T
Sbjct: 522 VTYNILLNALC---KQSSISRAIDLLNSMLDRGCDPDLVT 558



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 168/361 (46%), Gaps = 23/361 (6%)

Query: 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH 167
           H + L  +L       +L+ RM S    P   T+  I    V  G+A    ++   M E 
Sbjct: 282 HGLCLKGKLE---KAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEER 338

Query: 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKA 226
           G   +   ++ ++  L KE K ++A  LFK    K  + + I Y+ + +G C   + ++A
Sbjct: 339 GYHVNEYVYSALISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEA 398

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
           LEVL EM +    PN  TY+ ++KG+F AG   +A   + +M K     + V Y+ ++HG
Sbjct: 399 LEVLSEMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSVLIHG 458

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK--GYM 344
               G++K A  V+  M+  G  P V  Y +MI  L     VE+A+ ++ EM+ +     
Sbjct: 459 LCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNEMLCQEPDSQ 518

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           P+  TYN+++  LC    + RA++ +  M D  C+P++ T  I +R             L
Sbjct: 519 PDVVTYNILLNALCKQSSISRAIDLLNSMLDRGCDPDLVTCIIFLR------------TL 566

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
            EK+      P  D    L   +    K   +L A K++  M+ +   P+  T+ RV+  
Sbjct: 567 REKLD-----PPQDGREFLDGLVVRLLKRQRVLGASKIVEVMLQKLLPPKPSTWTRVVED 621

Query: 465 L 465
           L
Sbjct: 622 L 622



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 118/243 (48%), Gaps = 7/243 (2%)

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKR-KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           ++ K Y +A   E+A   F  M    +C+  V ++ ++++     G   RA   ++ ++ 
Sbjct: 100 VIFKAYGKAHLPEKAVGLFDRMAYEFECKRTVKSFNSVLNVIIQEGLFYRALEFYNHVIG 159

Query: 306 G---GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
                + P+V T+N +I+ +CK   V++A+ +F +M      P+  TY  ++ GLC    
Sbjct: 160 AKGVNISPNVLTFNLVIKTMCKVGLVDDAVQMFRDMPVSKCQPDVYTYCTLMDGLCKADR 219

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           ++ A+  +  M+ D C P+  T+N+LI   C  G++ R  +L + M    C PN  TYN 
Sbjct: 220 IDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNT 279

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           LI  + ++ K   L  A  LL  MV    +P   T+  ++NGL+  G       +L L  
Sbjct: 280 LIHGLCLKGK---LEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALME 336

Query: 483 RCG 485
             G
Sbjct: 337 ERG 339



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 27/200 (13%)

Query: 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA---YNLFK 197
           ++++       GK   A+ ++  M   GC+  + ++ ++++ L     VE A   YN   
Sbjct: 452 YSVLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNEML 511

Query: 198 VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
                 + DV++YN++ N  C     ++A+++L  M+DRG +P+L T  I L+       
Sbjct: 512 CQEPDSQPDVVTYNILLNALCKQSSISRAIDLLNSMLDRGCDPDLVTCIIFLRTLREKLD 571

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR-----NVFDGMVNGGVLPSV 312
             +  R FL+                  G  VV  +KR R      + + M+   + P  
Sbjct: 572 PPQDGREFLD------------------GL-VVRLLKRQRVLGASKIVEVMLQKLLPPKP 612

Query: 313 ATYNAMIQVLCKKDSVENAI 332
           +T+  +++ LC    V+ AI
Sbjct: 613 STWTRVVEDLCNPKKVQAAI 632


>gi|15225055|ref|NP_181456.1| lateral organ junction protein [Arabidopsis thaliana]
 gi|75100007|sp|O80958.1|PP194_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g39230, mitochondrial; AltName: Full=Protein LATERAL
           ORGAN JUNCTION; Flags: Precursor
 gi|3402682|gb|AAC28985.1| unknown protein [Arabidopsis thaliana]
 gi|330254554|gb|AEC09648.1| lateral organ junction protein [Arabidopsis thaliana]
          Length = 867

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/365 (28%), Positives = 173/365 (47%), Gaps = 6/365 (1%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
           RMKS+ + P+      + +  + A   + A++IF    E          N I  L CK+ 
Sbjct: 405 RMKSVRIAPSSVLVHTMIQGCLKAESPEAALEIFNDSFESWIAHGFMC-NKIFLLFCKQG 463

Query: 188 KVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
           KV+ A +  K+   K  + +V+ YN +    C +K  + A  +  EM+++GL PN  TY+
Sbjct: 464 KVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLEPNNFTYS 523

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
           I++ G+F+    + AW    +M     E + V Y TI++G   VG+  +A+ +   ++  
Sbjct: 524 ILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKE 583

Query: 307 GVLP-SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
                S  +YN++I    K    ++A+  + EM   G  PN  T+  +I G C +  M+ 
Sbjct: 584 KRYSMSCTSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKSNRMDL 643

Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
           ALE    MK  E + ++  Y  LI  FC   +++    LF ++     +PN+  YN LIS
Sbjct: 644 ALEMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSLIS 703

Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
                 K D    A  L  +MV+ G     FT+  +++GLL  GN  LA ++       G
Sbjct: 704 GFRNLGKMD---AAIDLYKKMVNDGISCDLFTYTTMIDGLLKDGNINLASDLYSELLDLG 760

Query: 486 RLPRQ 490
            +P +
Sbjct: 761 IVPDE 765



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 169/352 (48%), Gaps = 5/352 (1%)

Query: 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
           R+++     ++   M    L P   T++I+ + +        A  +   M+      +  
Sbjct: 496 RMKNMDLARSIFSEMLEKGLEPNNFTYSILIDGFFKNKDEQNAWDVINQMNASNFEANEV 555

Query: 175 SFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232
            +NTI++ LCK  +  KA  + +  +   ++     SYN I +G+  V  T+ A+E  +E
Sbjct: 556 IYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMSCTSYNSIIDGFVKVGDTDSAVETYRE 615

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M + G +PN+ T+  ++ G+ ++ +++ A     EMK  + ++D+  Y  ++ GF    +
Sbjct: 616 MSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEMKSMELKLDLPAYGALIDGFCKKND 675

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
           +K A  +F  +   G++P+V+ YN++I        ++ AI ++++MV  G   +  TY  
Sbjct: 676 MKTAYTLFSELPELGLMPNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTT 735

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           +I GL   G +  A +    + D    P+   + +L+      G+  +  ++ E+M    
Sbjct: 736 MIDGLLKDGNINLASDLYSELLDLGIVPDEILHMVLVNGLSKKGQFLKASKMLEEMKKKD 795

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
             PN+  Y+ +I+      +  +L  A +L  EM+++G +     FN +++G
Sbjct: 796 VTPNVLLYSTVIAG---HHREGNLNEAFRLHDEMLEKGIVHDDTVFNLLVSG 844



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 166/388 (42%), Gaps = 33/388 (8%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKS-LSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           F  A+  A +  D      L+  M+  L +  +Q+T+  +   +V  G  + AV++   M
Sbjct: 277 FSLAVQAACKTPDLVMALDLLREMRGKLGVPASQETYTSVIVAFVKEGNMEEAVRVMDEM 336

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
              G   S+ +  ++++  CK  ++ KA +LF ++       D + ++V+   +C     
Sbjct: 337 VGFGIPMSVIAATSLVNGYCKGNELGKALDLFNRMEEEGLAPDKVMFSVMVEWFCKNMEM 396

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            KA+E    M    + P+    + +++G  +A   E A   F +  +          + I
Sbjct: 397 EKAIEFYMRMKSVRIAPSSVLVHTMIQGCLKAESPEAALEIFNDSFE----------SWI 446

Query: 284 VHGFGV---------VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
            HGF            G++  A +    M   G+ P+V  YN M+   C+  +++ A  +
Sbjct: 447 AHGFMCNKIFLLFCKQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSI 506

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
           F EM+ KG  PN+ TY+++I G     + + A + + +M     E N   YN +I   C 
Sbjct: 507 FSEMLEKGLEPNNFTYSILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCK 566

Query: 395 AGEIERGLELF-----EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
            G+  +  E+      EK  S  C     +YN +I   FV+    D  V  +   EM + 
Sbjct: 567 VGQTSKAKEMLQNLIKEKRYSMSCT----SYNSIIDG-FVKVGDTDSAV--ETYREMSEN 619

Query: 450 GFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
           G  P   TF  ++NG        LA E+
Sbjct: 620 GKSPNVVTFTSLINGFCKSNRMDLALEM 647



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 148/333 (44%), Gaps = 14/333 (4%)

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF--KADVISY 210
           K + AVKIF  +   G       F+  +   CK   +  A +L +  RGK    A   +Y
Sbjct: 254 KPEEAVKIFRRVMSRGAEPDGLLFSLAVQAACKTPDLVMALDLLREMRGKLGVPASQETY 313

Query: 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270
             +   +       +A+ V+ EMV  G+  ++     ++ GY +  ++ +A   F  M++
Sbjct: 314 TSVIVAFVKEGNMEEAVRVMDEMVGFGIPMSVIAATSLVNGYCKGNELGKALDLFNRMEE 373

Query: 271 RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
                D V ++ +V  F    E+++A   +  M +  + PS    + MIQ   K +S E 
Sbjct: 374 EGLAPDKVMFSVMVEWFCKNMEMEKAIEFYMRMKSVRIAPSSVLVHTMIQGCLKAESPEA 433

Query: 331 AILVF----EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYN 386
           A+ +F    E  +  G+M N      +    C  G+++ A  F+  M+    EPNV  YN
Sbjct: 434 ALEIFNDSFESWIAHGFMCNK-----IFLLFCKQGKVDAATSFLKMMEQKGIEPNVVFYN 488

Query: 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
            ++   C    ++    +F +M      PN  TY+ILI   F   K+ D   A  ++ +M
Sbjct: 489 NMMLAHCRMKNMDLARSIFSEMLEKGLEPNNFTYSILIDGFF---KNKDEQNAWDVINQM 545

Query: 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
               F   +  +N ++NGL  +G    AKE+L+
Sbjct: 546 NASNFEANEVIYNTIINGLCKVGQTSKAKEMLQ 578



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/381 (20%), Positives = 158/381 (41%), Gaps = 39/381 (10%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
           V  LV   K      T + F  +   Y+   + D AV  F  M +      +   N +L 
Sbjct: 153 VNNLVDSSKRFGFELTPRAFNYLLNAYIRNKRMDYAVDCFGLMVDRKVVPFVPYVNNVLS 212

Query: 182 LLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
            L +   +++A  ++ K+       D ++  ++       ++  +A+++ + ++ RG  P
Sbjct: 213 SLVRSNLIDEAKEIYNKMVLIGVAGDNVTTQLLMRASLRERKPEEAVKIFRRVMSRGAEP 272

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMK-KRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           +   +++ ++   +   +  A     EM+ K        TYT+++  F   G ++ A  V
Sbjct: 273 DGLLFSLAVQAACKTPDLVMALDLLREMRGKLGVPASQETYTSVIVAFVKEGNMEEAVRV 332

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
            D MV  G+  SV    +++   CK + +  A+ +F  M  +G  P+   ++V++   C 
Sbjct: 333 MDEMVGFGIPMSVIAATSLVNGYCKGNELGKALDLFNRMEEEGLAPDKVMFSVMVEWFCK 392

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIR----------------------------- 390
             EME+A+EF  RMK     P+    + +I+                             
Sbjct: 393 NMEMEKAIEFYMRMKSVRIAPSSVLVHTMIQGCLKAESPEAALEIFNDSFESWIAHGFMC 452

Query: 391 -----YFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
                 FC  G+++      + M      PN+  YN ++ +   R K+ DL  A  +  E
Sbjct: 453 NKIFLLFCKQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLA-HCRMKNMDL--ARSIFSE 509

Query: 446 MVDRGFMPRKFTFNRVLNGLL 466
           M+++G  P  FT++ +++G  
Sbjct: 510 MLEKGLEPNNFTYSILIDGFF 530



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 126/273 (46%), Gaps = 1/273 (0%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII 144
           KA      L     Y+ S +S++  ID   ++ D  +       M      P   TF  +
Sbjct: 572 KAKEMLQNLIKEKRYSMSCTSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSL 631

Query: 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKF 203
              +  + + D A+++   M     +  L ++  ++D  CK+  ++ AY LF        
Sbjct: 632 INGFCKSNRMDLALEMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGL 691

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
             +V  YN + +G+  + + + A+++ K+MV+ G++ +L TY  ++ G  + G I  A  
Sbjct: 692 MPNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLKDGNINLASD 751

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
            + E+       D + +  +V+G    G+  +A  + + M    V P+V  Y+ +I    
Sbjct: 752 LYSELLDLGIVPDEILHMVLVNGLSKKGQFLKASKMLEEMKKKDVTPNVLLYSTVIAGHH 811

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
           ++ ++  A  + +EM+ KG + + T +N+++ G
Sbjct: 812 REGNLNEAFRLHDEMLEKGIVHDDTVFNLLVSG 844


>gi|255553139|ref|XP_002517612.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543244|gb|EEF44776.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 794

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 179/375 (47%), Gaps = 4/375 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           ++  ID   +  D      L   +K     PT KT+  I   +   GK +   K+ + M 
Sbjct: 210 YNTLIDGYCKKGDTERANVLFKELKMKGFLPTVKTYGAIINGFCKKGKFEVVDKLLVEMS 269

Query: 166 EHGCRQSLNSFNTILDLLCKEK-KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTN 224
           E G   S++ +N I+D   K   ++E A  +  + +     D+ +YN++  G C     +
Sbjct: 270 ERGLDVSIHIYNNIIDAQFKHGCRIEAADTVGWMIKSGCDPDMATYNILITGSCSCGEVH 329

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           KA ++L++ + RGL PN  +Y  ++  Y + G+   A    ++M +R  + D+VTY  ++
Sbjct: 330 KAEQLLEQAIKRGLLPNKVSYTPLIHNYCKQGEYLRALDLLIKMSERGHKPDLVTYAALI 389

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
           HG  V GE+  A  V + MV  GVLP    YN ++  LCKK  +  A ++  EM+ +   
Sbjct: 390 HGLIVAGEVDVALTVRNKMVEKGVLPDANIYNVLMSGLCKKGRLPAAKVLLAEMLDQNVA 449

Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
           P++     ++ G    G+ E A +      +   +P V  YN +I+ +C  G ++  L  
Sbjct: 450 PDAFITATLVDGFIRHGDFEEAKKLFELTIEKGIDPGVVGYNAMIKGYCKFGMMKDALLC 509

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
           F++M  G+  P+  TY+ +I       K +DL  A ++   MV     P   T+  ++NG
Sbjct: 510 FKRMIQGLHSPDEFTYSTIIDGYI---KMNDLHGALRMFGLMVKGACKPNVVTYTLLING 566

Query: 465 LLLIGNQGLAKEILR 479
             L G+   A++  +
Sbjct: 567 FCLSGDINRAEKTFK 581



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 170/342 (49%), Gaps = 9/342 (2%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   T+ I+     S G+  +A ++     + G   +  S+  ++   CK+ +  +A +L
Sbjct: 310 PDMATYNILITGSCSCGEVHKAEQLLEQAIKRGLLPNKVSYTPLIHNYCKQGEYLRALDL 369

Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             K+     K D+++Y  + +G  +    + AL V  +MV++G+ P+   YN+++ G  +
Sbjct: 370 LIKMSERGHKPDLVTYAALIHGLIVAGEVDVALTVRNKMVEKGVLPDANIYNVLMSGLCK 429

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G++  A     EM  +    D     T+V GF   G+ + A+ +F+  +  G+ P V  
Sbjct: 430 KGRLPAAKVLLAEMLDQNVAPDAFITATLVDGFIRHGDFEEAKKLFELTIEKGIDPGVVG 489

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YNAMI+  CK   +++A+L F+ M+   + P+  TY+ +I G     ++  AL   G M 
Sbjct: 490 YNAMIKGYCKFGMMKDALLCFKRMIQGLHSPDEFTYSTIIDGYIKMNDLHGALRMFGLMV 549

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
              C+PNV TY +LI  FC +G+I R  + F++M S    PN+ TY ILI       K  
Sbjct: 550 KGACKPNVVTYTLLINGFCLSGDINRAEKTFKQMLSLRLKPNVVTYTILIGCFC---KGV 606

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL-----LLIGNQ 471
           +L  A     +M+    +P   T+N ++NGL      +I NQ
Sbjct: 607 NLTKACSFFEQMLMEKCLPNDVTYNYLMNGLTNNVDFVISNQ 648



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 107/407 (26%), Positives = 187/407 (45%), Gaps = 40/407 (9%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE-HGCRQSLNSFN 177
           +  V +L+  MKS  L PT++ F+++   +   G  DRA++ + +  + H C   + S N
Sbjct: 82  FSEVESLLKIMKSKDLMPTREAFSLVISVFADCGLVDRALEFYRTFIKIHHCVPDVFSCN 141

Query: 178 TILDL-----------------------------------LCKEKKVEKAYNLFKVFRGK 202
           ++L++                                   LCKE KVE  + L +   G+
Sbjct: 142 SLLNVLVKHGKVEIACKVYDEMVDRNGEVDNYTVCIMVKGLCKEGKVEDGWKLIEKRWGR 201

Query: 203 -FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
               +++ YN + +G+C    T +A  + KE+  +G  P + TY  ++ G+ + G+ E  
Sbjct: 202 GCMPNIVFYNTLIDGYCKKGDTERANVLFKELKMKGFLPTVKTYGAIINGFCKKGKFEVV 261

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
            +  +EM +R  ++ +  Y  I+      G    A +    M+  G  P +ATYN +I  
Sbjct: 262 DKLLVEMSERGLDVSIHIYNNIIDAQFKHGCRIEAADTVGWMIKSGCDPDMATYNILITG 321

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
            C    V  A  + E+ + +G +PN  +Y  +I   C  GE  RAL+ + +M +   +P+
Sbjct: 322 SCSCGEVHKAEQLLEQAIKRGLLPNKVSYTPLIHNYCKQGEYLRALDLLIKMSERGHKPD 381

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
           + TY  LI     AGE++  L +  KM     LP+ + YN+L+S +    K   L  A  
Sbjct: 382 LVTYAALIHGLIVAGEVDVALTVRNKMVEKGVLPDANIYNVLMSGLC---KKGRLPAAKV 438

Query: 442 LLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           LL EM+D+   P  F    +++G +  G+   AK++  L    G  P
Sbjct: 439 LLAEMLDQNVAPDAFITATLVDGFIRHGDFEEAKKLFELTIEKGIDP 485



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 122/263 (46%), Gaps = 4/263 (1%)

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE-MKKRKCEIDVVTYTTIVHGF 287
           +LK M  + L P    +++V+  +   G ++ A  F+   +K   C  DV +  ++++  
Sbjct: 88  LLKIMKSKDLMPTREAFSLVISVFADCGLVDRALEFYRTFIKIHHCVPDVFSCNSLLNVL 147

Query: 288 GVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
              G+++ A  V+D MV+        T   M++ LCK+  VE+   + E+  G+G MPN 
Sbjct: 148 VKHGKVEIACKVYDEMVDRNGEVDNYTVCIMVKGLCKEGKVEDGWKLIEKRWGRGCMPNI 207

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
             YN +I G C  G+ ERA      +K     P V+TY  +I  FC  G+ E   +L  +
Sbjct: 208 VFYNTLIDGYCKKGDTERANVLFKELKMKGFLPTVKTYGAIINGFCKKGKFEVVDKLLVE 267

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467
           M       ++  YN +I + F   K    + A   +  M+  G  P   T+N ++ G   
Sbjct: 268 MSERGLDVSIHIYNNIIDAQF---KHGCRIEAADTVGWMIKSGCDPDMATYNILITGSCS 324

Query: 468 IGNQGLAKEILRLQSRCGRLPRQ 490
            G    A+++L    + G LP +
Sbjct: 325 CGEVHKAEQLLEQAIKRGLLPNK 347



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 129/275 (46%), Gaps = 15/275 (5%)

Query: 102 SPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
           +P +F  A  +D   R  D+     L        + P    +  + + Y   G    A+ 
Sbjct: 449 APDAFITATLVDGFIRHGDFEEAKKLFELTIEKGIDPGVVGYNAMIKGYCKFGMMKDALL 508

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWC 218
            F  M +        +++TI+D   K   +  A  +F +  +G  K +V++Y ++ NG+C
Sbjct: 509 CFKRMIQGLHSPDEFTYSTIIDGYIKMNDLHGALRMFGLMVKGACKPNVVTYTLLINGFC 568

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
           L    N+A +  K+M+   L PN+ TY I++  + +   + +A  FF +M   KC  + V
Sbjct: 569 LSGDINRAEKTFKQMLSLRLKPNVVTYTILIGCFCKGVNLTKACSFFEQMLMEKCLPNDV 628

Query: 279 TYTTIVHGF----GVVGEIKRARNV--------FDGMVNGGVLPSVATYNAMIQVLCKKD 326
           TY  +++G       V   +R+           F  M++ G     A+YN+++  LC+  
Sbjct: 629 TYNYLMNGLTNNVDFVISNQRSEQTENSLVLESFGMMISDGWDRRAASYNSILICLCQHK 688

Query: 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
            V++A+ + ++M+ KG++P+  +   ++ GLC  G
Sbjct: 689 MVKHALHLRDKMMSKGFLPDPVSLVALLHGLCLEG 723


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 108/379 (28%), Positives = 178/379 (46%), Gaps = 53/379 (13%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   TF  +       G+   AV +   M E G + +  ++ TI+D +CK      A NL
Sbjct: 176 PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNL 235

Query: 196 FKVFR--GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253
            +        K +V+ Y+ I +G     R + A  +  EM ++G+ P+L TYN ++ G+ 
Sbjct: 236 LRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFC 295

Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA 313
            +G+  EA R   EM +RK   +VVTY+ +++ +    +   A  ++D M+  G++P+  
Sbjct: 296 SSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTI 355

Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMP---------------------------- 345
           TYN+MI   CK++ ++ A  +F  M  KG  P                            
Sbjct: 356 TYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEM 415

Query: 346 -------NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
                  ++TTYN +I G C  G++  AL+   +M      P++ T N L+   CD G++
Sbjct: 416 TETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKL 475

Query: 399 ERGLELFEKMG------------SGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
           +  LE+F+ M             +GV  P++ TYNILIS +    K    L A +L  EM
Sbjct: 476 KDALEMFKAMQKSKMDLDASRPFNGV-EPDVQTYNILISGLINEGK---FLEAEELYKEM 531

Query: 447 VDRGFMPRKFTFNRVLNGL 465
             RG +P   T++ ++NGL
Sbjct: 532 PHRGIVPNTITYSSMINGL 550



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 185/388 (47%), Gaps = 20/388 (5%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            R  D   ++T    M+   + P   T+  + + + S+G+   A ++   M E     ++
Sbjct: 263 GRHSDAHNLYT---EMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNV 319

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKRTNKALEVLK 231
            +++ +++   KE+K  +A  L+     RG    + I+YN + +G+C   R + A  +  
Sbjct: 320 VTYSALINAYVKERKFFEAEELYDEMLPRGII-PNTITYNSMIDGFCKQNRLDAAEHMFY 378

Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
            M  +G +P++ T+N ++ GY  A +I++      EM +     D  TY T++HGF +VG
Sbjct: 379 VMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVG 438

Query: 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK---------- 341
           ++  A ++   M++ GV P + T N ++  LC    +++A+ +F+ M             
Sbjct: 439 DLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPF 498

Query: 342 -GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
            G  P+  TYN++I GL + G+   A E    M      PN  TY+ +I   C    ++ 
Sbjct: 499 NGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDE 558

Query: 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460
             ++F+ MGS    P++ T+N L+S      + DD L   +L  EM  RG +    T+  
Sbjct: 559 ATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGL---ELFCEMGRRGIVADAITYIT 615

Query: 461 VLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           +++G   +GN   A +I +     G  P
Sbjct: 616 LIHGFRKVGNINGALDIFQEMISSGVYP 643



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 164/340 (48%), Gaps = 12/340 (3%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   I+   + R +     L   M    + P   T+  + + +    + D A  +F  M
Sbjct: 321 TYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVM 380

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRT 223
              GC   + +FNT++D  C  K+++    L  ++      AD  +YN + +G+CLV   
Sbjct: 381 ATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDL 440

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID------- 276
           N AL++ ++M+  G+ P++ T N +L G    G++++A   F  M+K K ++D       
Sbjct: 441 NAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNG 500

Query: 277 ----VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332
               V TY  ++ G    G+   A  ++  M + G++P+  TY++MI  LCK+  ++ A 
Sbjct: 501 VEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEAT 560

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
            +F+ M  K + P+  T+N ++ G C  G ++  LE    M       +  TY  LI  F
Sbjct: 561 QMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGF 620

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
              G I   L++F++M S    P+  T   +++ ++ +++
Sbjct: 621 RKVGNINGALDIFQEMISSGVYPDTITIRSMLTVLWSKEE 660



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 176/385 (45%), Gaps = 7/385 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
            F+  + +  R+     V +L  +M+   +     +F I+ + + S  K   A+  F  +
Sbjct: 79  DFNKLMGVVVRMERPDLVISLYQKMERKQIPCDVYSFNILIKCFCSCSKLPFALSTFGKI 138

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTN 224
            + G +  + +F+T+L  LC E +V +A +LF       + +V+++  + NG C   R  
Sbjct: 139 TKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQM---CRPNVVTFTTLMNGLCREGRVV 195

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK-RKCEIDVVTYTTI 283
           +A+ +L  MV+ GL PN  TY  ++ G  + G    A     +M++    + +VV Y+ I
Sbjct: 196 EAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAI 255

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + G    G    A N++  M   G+ P + TYN MI   C       A  + +EM+ +  
Sbjct: 256 IDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKI 315

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN  TY+ +I       +   A E    M      PN  TYN +I  FC    ++    
Sbjct: 316 NPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEH 375

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           +F  M +  C P++ T+N LI      K+ DD     +LL EM + G +    T+N +++
Sbjct: 376 MFYVMATKGCSPDVFTFNTLIDGYCGAKRIDD---GTELLHEMTETGLVADTTTYNTLIH 432

Query: 464 GLLLIGNQGLAKEILRLQSRCGRLP 488
           G  L+G+   A ++ +     G  P
Sbjct: 433 GFCLVGDLNAALDLSQQMISSGVCP 457



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 152/313 (48%), Gaps = 9/313 (2%)

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVI 213
           + A+ +F  M       S+  FN ++ ++ + ++ +   +L+ K+ R +   DV S+N++
Sbjct: 59  EDAIDLFSDMVRSRPLPSVIDFNKLMGVVVRMERPDLVISLYQKMERKQIPCDVYSFNIL 118

Query: 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
              +C   +   AL    ++   G  P++ T++ +L G     ++ EA   F +M    C
Sbjct: 119 IKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQM----C 174

Query: 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333
             +VVT+TT+++G    G +  A  + D MV  G+ P+  TY  ++  +CK     +A+ 
Sbjct: 175 RPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALN 234

Query: 334 VFEEMVGKGYM-PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
           +  +M    ++ PN   Y+ +I GL   G    A      M++    P++ TYN +I  F
Sbjct: 235 LLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGF 294

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
           C +G       L ++M      PN+ TY+ LI++    +K      A +L  EM+ RG +
Sbjct: 295 CSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERK---FFEAEELYDEMLPRGII 351

Query: 453 PRKFTFNRVLNGL 465
           P   T+N +++G 
Sbjct: 352 PNTITYNSMIDGF 364



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 117/234 (50%), Gaps = 14/234 (5%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE----------- 166
           D      L  +M S  + P   T   + +     GK   A+++F +M +           
Sbjct: 439 DLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPF 498

Query: 167 HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGWCLVKRTN 224
           +G    + ++N ++  L  E K  +A  L+K    RG    + I+Y+ + NG C   R +
Sbjct: 499 NGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRG-IVPNTITYSSMINGLCKQSRLD 557

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           +A ++   M  +  +P++ T+N ++ GY +AG++++    F EM +R    D +TY T++
Sbjct: 558 EATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLI 617

Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
           HGF  VG I  A ++F  M++ GV P   T  +M+ VL  K+ ++ A+ + E++
Sbjct: 618 HGFRKVGNINGALDIFQEMISSGVYPDTITIRSMLTVLWSKEELKRAVAMLEDL 671



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 140/312 (44%), Gaps = 19/312 (6%)

Query: 70  QLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVH 127
            ++D   K+  N    A H F +++   T   SP   +F+  ID     +       L+H
Sbjct: 359 SMIDGFCKQ--NRLDAAEHMFYVMA---TKGCSPDVFTFNTLIDGYCGAKRIDDGTELLH 413

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
            M    L     T+  +   +   G  + A+ +   M   G    + + NT+LD LC   
Sbjct: 414 EMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNG 473

Query: 188 KVEKAYNLFKVFR------------GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235
           K++ A  +FK  +               + DV +YN++ +G     +  +A E+ KEM  
Sbjct: 474 KLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPH 533

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
           RG+ PN  TY+ ++ G  +  +++EA + F  M  +    DVVT+ T+V G+   G +  
Sbjct: 534 RGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDD 593

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
              +F  M   G++    TY  +I    K  ++  A+ +F+EM+  G  P++ T   ++ 
Sbjct: 594 GLELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQEMISSGVYPDTITIRSMLT 653

Query: 356 GLCHTGEMERAL 367
            L    E++RA+
Sbjct: 654 VLWSKEELKRAV 665



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 127/266 (47%), Gaps = 8/266 (3%)

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
           +G+  +K    A+++  +MV     P++  +N ++    R  + +     + +M++++  
Sbjct: 50  SGFHEIKGLEDAIDLFSDMVRSRPLPSVIDFNKLMGVVVRMERPDLVISLYQKMERKQIP 109

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
            DV ++  ++  F    ++  A + F  +   G  P V T++ ++  LC +D V  A+ +
Sbjct: 110 CDVYSFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDL 169

Query: 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
           F +M      PN  T+  ++ GLC  G +  A+  + RM +D  +PN  TY  ++   C 
Sbjct: 170 FHQMC----RPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCK 225

Query: 395 AGEIERGLELFEKMGSGVCL-PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
            G+    L L  KM     + PN+  Y+ +I  ++   +  D   A  L  EM ++G  P
Sbjct: 226 IGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSD---AHNLYTEMQEKGIFP 282

Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILR 479
             FT+N +++G    G    A+ +L+
Sbjct: 283 DLFTYNCMIDGFCSSGRWSEAQRLLQ 308


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 104/381 (27%), Positives = 185/381 (48%), Gaps = 12/381 (3%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           S+F+  + +  +  D +    L+ ++    + P   T+ +  +     G+ D AV++   
Sbjct: 217 STFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGC 276

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-----FKADVISYNVIANGWC 218
           + E G +  + ++N ++  LCK  K ++A    +V+ GK      + D  +YN +  G+C
Sbjct: 277 LIEQGPKPDVITYNNLIYGLCKNSKFQEA----EVYLGKMVNEGLEPDSYTYNTLIAGYC 332

Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
                  A  ++ + V  G  P+  TY  ++ G    G+   A   F E   +  + +V+
Sbjct: 333 KGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVI 392

Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
            Y T++ G    G I  A  + + M   G++P V T+N ++  LCK   V +A  + + M
Sbjct: 393 LYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVM 452

Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
           + KGY P+  T+N++I G     +ME ALE +  M D+  +P+V TYN L+   C   + 
Sbjct: 453 ISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKF 512

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
           E  +E ++ M    C PNL T+NIL+ S+   +K D+ L    LL EM ++   P   TF
Sbjct: 513 EDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEAL---GLLEEMKNKSVNPDAVTF 569

Query: 459 NRVLNGLLLIGNQGLAKEILR 479
             +++G    G+   A  + R
Sbjct: 570 GTLIDGFCKNGDLDGAYTLFR 590



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 181/372 (48%), Gaps = 5/372 (1%)

Query: 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
           ++     + +M +  L P   T+  +   Y   G    A +I      +G      ++ +
Sbjct: 302 FQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRS 361

Query: 179 ILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237
           ++D LC E +  +A  LF    GK  K +VI YN +  G        +A ++  EM ++G
Sbjct: 362 LIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKG 421

Query: 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297
           L P + T+NI++ G  + G + +A      M  +    D+ T+  ++HG+    +++ A 
Sbjct: 422 LIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENAL 481

Query: 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357
            + D M++ GV P V TYN+++  LCK    E+ +  ++ MV KG  PN  T+N+++  L
Sbjct: 482 EILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESL 541

Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL-PN 416
           C   +++ AL  +  MK+    P+  T+  LI  FC  G+++    LF KM     +  +
Sbjct: 542 CRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSS 601

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKE 476
             TYNI+I + F  K   ++ +A KL  EMVDR   P  +T+  +++G    GN  L  +
Sbjct: 602 TPTYNIIIHA-FTEKL--NVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYK 658

Query: 477 ILRLQSRCGRLP 488
            L      G +P
Sbjct: 659 FLLEMMENGFIP 670



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 116/461 (25%), Positives = 206/461 (44%), Gaps = 43/461 (9%)

Query: 69  PQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVW-TLVH 127
           P+ V  +IK      +KAL  FN +     + H+ S++   I+       +  +   LV 
Sbjct: 7   PKHVTAVIK-CQKDPMKALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVD 65

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
             +++     +  +    + Y   GK   AV +F  M  + C  ++ S+N I+ +L    
Sbjct: 66  MRENVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSG 125

Query: 188 KVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
             ++A+ ++   R +    DV S+ +    +C   R + AL +L  M  +G   N+  Y 
Sbjct: 126 YFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYC 185

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
            V+ G++      E +  F +M      + + T+  ++      G++K    + D ++  
Sbjct: 186 TVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKR 245

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
           GVLP++ TYN  IQ LC++  ++ A+ +   ++ +G  P+  TYN +I GLC   + + A
Sbjct: 246 GVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEA 305

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFC-------------DA------------------ 395
             ++G+M ++  EP+  TYN LI  +C             DA                  
Sbjct: 306 EVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDG 365

Query: 396 ----GEIERGLELF-EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450
               GE  R L LF E +G G+  PN+  YN LI  +        +L A +L  EM ++G
Sbjct: 366 LCHEGETNRALALFNEALGKGI-KPNVILYNTLIKGL---SNQGMILEAAQLANEMSEKG 421

Query: 451 FMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
            +P   TFN ++NGL  +G    A  ++++    G  P  F
Sbjct: 422 LIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIF 462



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 130/274 (47%), Gaps = 8/274 (2%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAG---KADRAVKIFLSMHEHGCRQSLNSFNTILD 181
           L + M    L P  +TF I+       G    AD  VK+ +S    G    + +FN ++ 
Sbjct: 413 LANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMIS---KGYFPDIFTFNILIH 469

Query: 182 LLCKEKKVEKAYNLFKV-FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
               + K+E A  +  V        DV +YN + NG C   +    +E  K MV++G  P
Sbjct: 470 GYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAP 529

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           NL T+NI+L+   R  +++EA     EMK +    D VT+ T++ GF   G++  A  +F
Sbjct: 530 NLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLF 589

Query: 301 DGMVNG-GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
             M     V  S  TYN +I    +K +V  A  +F+EMV +   P+  TY +++ G C 
Sbjct: 590 RKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCK 649

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           TG +    +F+  M ++   P++ T   +I   C
Sbjct: 650 TGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLC 683



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 142/301 (47%), Gaps = 5/301 (1%)

Query: 156 RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIA 214
            A ++   M E G    + +FN +++ LCK   V  A  L KV   K +  D+ ++N++ 
Sbjct: 409 EAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILI 468

Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
           +G+    +   ALE+L  M+D G++P++ TYN +L G  +  + E+    +  M ++ C 
Sbjct: 469 HGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCA 528

Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
            ++ T+  ++       ++  A  + + M N  V P   T+  +I   CK   ++ A  +
Sbjct: 529 PNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTL 588

Query: 335 FEEMVGKGYMPNST-TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           F +M     + +ST TYN++I        +  A +    M D    P+  TY +++  FC
Sbjct: 589 FRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFC 648

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
             G +  G +   +M     +P+L T   +I+ + V    D +  A  ++  MV +G +P
Sbjct: 649 KTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCVE---DRVYEAAGIIHRMVQKGLVP 705

Query: 454 R 454
            
Sbjct: 706 E 706



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 130/318 (40%), Gaps = 40/318 (12%)

Query: 71  LVDQIIKRLWNHA--LKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHR 128
           L + +IK L N    L+A    N +S          +F+  ++   ++        LV  
Sbjct: 393 LYNTLIKGLSNQGMILEAAQLANEMS-EKGLIPEVQTFNILVNGLCKMGCVSDADGLVKV 451

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           M S    P   TF I+   Y +  K + A++I   M ++G    + ++N++L+ LCK  K
Sbjct: 452 MISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSK 511

Query: 189 VEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT--- 244
            E     +K    K  A ++ ++N++    C  ++ ++AL +L+EM ++ +NP+  T   
Sbjct: 512 FEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGT 571

Query: 245 ---------------------------------YNIVLKGYFRAGQIEEAWRFFLEMKKR 271
                                            YNI++  +     +  A + F EM  R
Sbjct: 572 LIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDR 631

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
               D  TY  +V GF   G +         M+  G +PS+ T   +I  LC +D V  A
Sbjct: 632 CLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEA 691

Query: 332 ILVFEEMVGKGYMPNSTT 349
             +   MV KG +P +  
Sbjct: 692 AGIIHRMVQKGLVPEAVN 709


>gi|449458524|ref|XP_004146997.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Cucumis sativus]
          Length = 481

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/457 (24%), Positives = 221/457 (48%), Gaps = 28/457 (6%)

Query: 33  LPPAAADPAALASLILTSTDPRTLTQTLHCPSLHWTPQLV---DQIIK---RLWN----- 81
           LP A+  P       L+S  P ++ QT    + H  P L+   D+ I    RL +     
Sbjct: 7   LPSASFKPNLSPLCTLSSPIPSSVPQT--SSTNHPNPILLAFNDRGISFQHRLSSFLRNC 64

Query: 82  -----HALKALHFFNIL-SYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLG 135
                  ++A HFF+++   HP      SSF+  +   A++  Y  +++L ++M+   L 
Sbjct: 65  KTGNIDVIQAFHFFDLMMRSHPI--PPISSFNRLLGGLAKINHYSQLFSLYNKMRLAGLS 122

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL---CKEKKVEKA 192
           P   T  I+A    +  +    +     +   G    + ++NT++  L   CK    ++A
Sbjct: 123 PDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLYGLCKVGHEDEA 182

Query: 193 YNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
             +F+  + +    +VISY+ + +G+C   +  ++  +  EMVD+G+ PNL  +N+++  
Sbjct: 183 KEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDI 242

Query: 252 YFRAGQIEE---AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
             + G+I +   A + FL M  + CE + ++YT +++G+  + +++ A N+++ M   G 
Sbjct: 243 LCKEGKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGK 302

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
            P+V TY+ ++  L +   V +A  +F  M   G   +S  Y + + GLC  G +  A+E
Sbjct: 303 RPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAME 362

Query: 369 FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
               +K    + + ++Y+ LI   C AG++E   E F+++      PN+ T NI+I    
Sbjct: 363 LFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMIHGFC 422

Query: 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
             ++ D   +  + + +M + G  P   T+N +L G 
Sbjct: 423 RVEQVDKANILFEKMEKMEENGCTPDIITYNTLLRGF 459



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 152/291 (52%), Gaps = 7/291 (2%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           +   MK+  + P   +++ +   +  AGK + + ++F  M + G + +L  FN ++D+LC
Sbjct: 185 IFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILC 244

Query: 185 KEKKV---EKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
           KE K+     A  LF     K  + + ISY ++ NG+C + +  +A+ +  EM   G  P
Sbjct: 245 KEGKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRP 304

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           N+ TY+ +L G  + G++ +A + F  MK     +D   Y   + G    G +  A  +F
Sbjct: 305 NVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELF 364

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           + + +        +Y+ +I  LCK   VE A   F+++  +G  PN  T N++I G C  
Sbjct: 365 NELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRV 424

Query: 361 GEMERA---LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            ++++A    E + +M+++ C P++ TYN L+R FC++ ++E  + L  KM
Sbjct: 425 EQVDKANILFEKMEKMEENGCTPDIITYNTLLRGFCESNKLEEVVNLLHKM 475



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 78/147 (53%), Gaps = 4/147 (2%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           MK+  +      + I  +     G    A+++F  +  +  +    S++ ++D LCK  K
Sbjct: 332 MKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGK 391

Query: 189 VEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKA---LEVLKEMVDRGLNPNLTT 244
           VE A+  FK    +  + +V++ N++ +G+C V++ +KA    E +++M + G  P++ T
Sbjct: 392 VEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIIT 451

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKR 271
           YN +L+G+  + ++EE      +M KR
Sbjct: 452 YNTLLRGFCESNKLEEVVNLLHKMFKR 478


>gi|242069919|ref|XP_002450236.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
 gi|241936079|gb|EES09224.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
          Length = 833

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 128/472 (27%), Positives = 207/472 (43%), Gaps = 97/472 (20%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVW------TLVHRMK---SLSLGP 136
           AL  F++L  H   A S ++F+H +   +R     +        +L  RM    S  + P
Sbjct: 135 ALKLFDLLLPHARPA-SVTAFNHLLTAVSRASGRHSTLESQLGISLFDRMVRECSDKVAP 193

Query: 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN-- 194
            + T++I+   +   G+ +    +F  + + G R +   FN +L  LC  K++++A N  
Sbjct: 194 DRCTYSILIGCFCRMGRLEHGFAVFGLILKTGWRVNHIVFNQLLKGLCDAKRLDEATNIL 253

Query: 195 LFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV-DRGLN--PNLTTYNIVLKG 251
           L+++       +V+SYN +  G+C   R  +ALE+L  M  D+GL+  P++ +YN V+ G
Sbjct: 254 LWRMPEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVMADDQGLSCPPDVVSYNTVING 313

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
           +FR GQ+++A+  FL+M  R    DVVTY T++ G      + RA+ VF  M++ GV PS
Sbjct: 314 FFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLDKGVKPS 373

Query: 312 VATYNAMIQ-----------------------------------VLCKK----------D 326
             TYN +I                                     LCK           D
Sbjct: 374 NGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCFIYALLLDYLCKNGRCTEARNIFD 433

Query: 327 SV-----------ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM------------ 363
           SV           + A+ +F++M  +G  PN   Y  +I  LC  G +            
Sbjct: 434 SVIRKGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYGALIDALCKLGRVDDAILKFNQMIN 493

Query: 364 -----------ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
                      E+A E V  M D     +V  +N L+   C  G +     L E M    
Sbjct: 494 EVYGLCTVEKWEKAEELVFEMLDQGIRLDVVVFNTLMCDLCREGRVMEAQRLIELMLRVG 553

Query: 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
             P++ +YN L+    +  ++D+   A KLL  MV  G  P +FT+N +L+G
Sbjct: 554 VRPDVISYNTLVDGHCLTGRTDE---AAKLLDVMVSIGLKPNEFTYNTLLHG 602



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 95/300 (31%), Positives = 153/300 (51%), Gaps = 4/300 (1%)

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV-FRGKFKADVISYN 211
           K ++A ++   M + G R  +  FNT++  LC+E +V +A  L ++  R   + DVISYN
Sbjct: 503 KWEKAEELVFEMLDQGIRLDVVVFNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYN 562

Query: 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
            + +G CL  RT++A ++L  MV  GL PN  TYN +L GY +A +I++A+    EM   
Sbjct: 563 TLVDGHCLTGRTDEAAKLLDVMVSIGLKPNEFTYNTLLHGYCKARRIDDAYSLLREMLMN 622

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
               DVVTY TI+HG    G    A+ ++  M+N      + TYN ++  LCK + V+ A
Sbjct: 623 GPTPDVVTYNTILHGLFQTGRFSEAKELYLNMINSRTQWDMYTYNIILNGLCKNNCVDEA 682

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
             +F+ +  KG   +  T+N++I  L   G+ E A++    +      P+V+TY ++   
Sbjct: 683 FKMFQSLCSKGLQLHIITFNIMIGALLKGGKKEDAMDLFATISAYGLVPDVETYCLIAEN 742

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
               G +E    LF  M      PN    N L+     R    D+  AG  L ++ ++ F
Sbjct: 743 LIKEGSLEELGVLFSAMEENGTAPNSRMLNALVRRFLHRG---DISRAGAYLSKLDEKNF 799



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 156/319 (48%), Gaps = 20/319 (6%)

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIA 214
           D AV IF  M + G   ++ ++  ++D LCK  +V+ A              ++ +N + 
Sbjct: 447 DEAVCIFDKMRQQGLSPNVVNYGALIDALCKLGRVDDA--------------ILKFNQMI 492

Query: 215 N---GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
           N   G C V++  KA E++ EM+D+G+  ++  +N ++    R G++ EA R    M + 
Sbjct: 493 NEVYGLCTVEKWEKAEELVFEMLDQGIRLDVVVFNTLMCDLCREGRVMEAQRLIELMLRV 552

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
               DV++Y T+V G  + G    A  + D MV+ G+ P+  TYN ++   CK   +++A
Sbjct: 553 GVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKPNEFTYNTLLHGYCKARRIDDA 612

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
             +  EM+  G  P+  TYN ++ GL  TG    A E    M +   + ++ TYNI++  
Sbjct: 613 YSLLREMLMNGPTPDVVTYNTILHGLFQTGRFSEAKELYLNMINSRTQWDMYTYNIILNG 672

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
            C    ++   ++F+ + S     ++ T+NI+I ++    K +D   A  L   +   G 
Sbjct: 673 LCKNNCVDEAFKMFQSLCSKGLQLHIITFNIMIGALLKGGKKED---AMDLFATISAYGL 729

Query: 452 MPRKFTFNRVLNGLLLIGN 470
           +P   T+  +   L+  G+
Sbjct: 730 VPDVETYCLIAENLIKEGS 748



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 136/269 (50%), Gaps = 1/269 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M  + + P   ++  + + +   G+ D A K+   M   G + +  ++NT+L   C
Sbjct: 545 LIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKPNEFTYNTLLHGYC 604

Query: 185 KEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K ++++ AY+L + +       DV++YN I +G     R ++A E+   M++     ++ 
Sbjct: 605 KARRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQTGRFSEAKELYLNMINSRTQWDMY 664

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYNI+L G  +   ++EA++ F  +  +  ++ ++T+  ++      G+ + A ++F  +
Sbjct: 665 TYNIILNGLCKNNCVDEAFKMFQSLCSKGLQLHIITFNIMIGALLKGGKKEDAMDLFATI 724

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G++P V TY  + + L K+ S+E   ++F  M   G  PNS   N ++R   H G++
Sbjct: 725 SAYGLVPDVETYCLIAENLIKEGSLEELGVLFSAMEENGTAPNSRMLNALVRRFLHRGDI 784

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYF 392
            RA  ++ ++ +        T ++LI  +
Sbjct: 785 SRAGAYLSKLDEKNFSLEASTASMLISLY 813



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 90/175 (51%), Gaps = 10/175 (5%)

Query: 298 NVFDGMV---NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
           ++FD MV   +  V P   TY+ +I   C+   +E+   VF  ++  G+  N   +N ++
Sbjct: 178 SLFDRMVRECSDKVAPDRCTYSILIGCFCRMGRLEHGFAVFGLILKTGWRVNHIVFNQLL 237

Query: 355 RGLCHTGEMERALE-FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG-- 411
           +GLC    ++ A    + RM +  C PNV +YN L++ FC+    E  LEL   M     
Sbjct: 238 KGLCDAKRLDEATNILLWRMPEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVMADDQG 297

Query: 412 -VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
             C P++ +YN +I+  F   + D    A  L ++M+DRG  P   T+N V++GL
Sbjct: 298 LSCPPDVVSYNTVINGFFREGQVDK---AYNLFLQMIDRGIPPDVVTYNTVIDGL 349


>gi|115448805|ref|NP_001048182.1| Os02g0759500 [Oryza sativa Japonica Group]
 gi|46805701|dbj|BAD17102.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47497356|dbj|BAD19395.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113537713|dbj|BAF10096.1| Os02g0759500 [Oryza sativa Japonica Group]
 gi|125583759|gb|EAZ24690.1| hypothetical protein OsJ_08460 [Oryza sativa Japonica Group]
 gi|215704115|dbj|BAG92955.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215766866|dbj|BAG99094.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 555

 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 108/417 (25%), Positives = 194/417 (46%), Gaps = 19/417 (4%)

Query: 68  TPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAA----RLRDYRTVW 123
           T  LV  ++ RL      A  FF   S+   Y H  ++++  ID+ +    + R +  + 
Sbjct: 111 TTPLVADVLHRLRYDEKLAFRFFVWASHQDGYEHEAATYNDVIDILSGTRYKARQFGVLC 170

Query: 124 TLVHRMKSLSLG--PTQKTFAII---AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178
            ++  MK       P      I+    E++++  +   A K  + M         ++ N 
Sbjct: 171 DVLDHMKRRRTRSVPVDDLLGILRAYTEKHLTHLRK-LAKKRRVRMRTP---PETDALNV 226

Query: 179 ILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           +LD  CK   V +A  +F   + K   +  +Y+++  GWC  +   +A++VL+EM+    
Sbjct: 227 LLDAFCKCGMVREAEVVFSRVKRKLLGNAETYSILFFGWCRARDPKRAMKVLEEMIQMKH 286

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID---VVTYTTIVHGFGVVGEIKR 295
            P   TYN  +  +  AG + EA   F  M+     I      TY+ ++      G+++ 
Sbjct: 287 TPENFTYNAAIDSFCSAGLVSEARDLFEFMRTEGSTISSPTAKTYSIMIAALAKAGQMEE 346

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
              +   M   G +P V+TY  +I+ +   D ++ A  V +EM   G+ P+  TYN  ++
Sbjct: 347 CFELISEMRKCGCMPDVSTYKDLIEGMLLVDKLDAAYCVLDEMAKAGFPPDIVTYNCFLK 406

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
            LC   + + ALE   RM +  CEP+V TYN+L+  F +  E +R + ++ +M    C  
Sbjct: 407 VLCGLQKADDALELCERMIEAHCEPSVHTYNMLMVMFFEMREPDRAINIWIEMDKRGCHR 466

Query: 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQG 472
            +DTY  +I  +F   +++D   A  LL E+++RG       F+ ++  L  +GN G
Sbjct: 467 AVDTYETMIDGLFDSGRTED---ATALLDEVINRGMKLSYKKFDAIMLRLSAVGNLG 520



 Score = 39.7 bits (91), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 4/99 (4%)

Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA 439
           P     N+L+  FC  G +     +F ++   + L N +TY+IL    F   ++ D   A
Sbjct: 219 PETDALNVLLDAFCKCGMVREAEVVFSRVKRKL-LGNAETYSILF---FGWCRARDPKRA 274

Query: 440 GKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
            K+L EM+     P  FT+N  ++     G    A+++ 
Sbjct: 275 MKVLEEMIQMKHTPENFTYNAAIDSFCSAGLVSEARDLF 313


>gi|147797511|emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]
          Length = 814

 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/354 (28%), Positives = 163/354 (46%), Gaps = 40/354 (11%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   +F+I+ +   + GK D A+ +F  M   GC+Q++  +N ++D L    ++E+ Y L
Sbjct: 415 PXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLL 474

Query: 196 FKVFRG------KFKADVI------------------------------SYNVIANGWCL 219
            K  +G      +F  + I                               Y ++    C 
Sbjct: 475 LKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCK 534

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
            KR+ +A   L EMV  G  P++  Y+  + G+ +   +++A   F ++  R    DVV 
Sbjct: 535 RKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVA 594

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y T+++GF  V  +  A ++ D MV  G++PSV TYN +I   CK   ++ A      MV
Sbjct: 595 YNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMV 654

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
           GK   PN  TY  +I GLC+ G  + A+     M+   C PN  ++  LI   C  G  +
Sbjct: 655 GKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCGWPD 714

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
             L  F +MG     P+   Y  LI+S F+  K+  L  A ++L EMV +G  P
Sbjct: 715 AALLYFREMGERE-TPDTIVYVALITS-FISNKNPTL--AFEILKEMVAKGKFP 764



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/392 (21%), Positives = 171/392 (43%), Gaps = 53/392 (13%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           + L+ RM+ L +   +KTF ++   +V   + D+A+++F  M + G    ++ ++ ++  
Sbjct: 248 FELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGG 307

Query: 183 LCKEKKVEKAYNLFKVFRG----------------------------------KFKADVI 208
           LC +K++EKA +L    +                                     +A ++
Sbjct: 308 LCAKKEIEKALHLLSEMKELGIDPDIQILSKLIPYCSEEVDIYRLIEERLEDLDTEAMLL 367

Query: 209 SYNVIANGWCLVKRTNKALEVLKE----------------MVDRGLNPNLTTYNIVLKGY 252
            YN + NG    K  +KA  +L                  MV   + P  T+++IV+ G 
Sbjct: 368 LYNSVLNGLVNGKSVDKAYYLLXAMTGDNYTDNFEVNKFFMVKEMVRPXTTSFSIVIDGL 427

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
              G+++ A   F +M +  C+ +V+ Y  ++        ++    +   M   G  P+ 
Sbjct: 428 CNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLLLKEMKGSGFRPTQ 487

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            T+N++   LC+++ V  A+ +  EM   G+ P    Y ++++ LC       A  F+  
Sbjct: 488 FTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCKRKRSAEACNFLAE 547

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           M  +   P++  Y+  I  F     +++ LE+F  + +    P++  YN LI+     K+
Sbjct: 548 MVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKR 607

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
             +   A  +L EMV +G +P   T+N +++G
Sbjct: 608 VSE---AHDILDEMVAKGLVPSVVTYNLLIDG 636



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/400 (23%), Positives = 167/400 (41%), Gaps = 57/400 (14%)

Query: 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVF 199
            +I+   +   G+ D+A ++   M + G R +  +F  ++    ++ +V+KA  LF K+ 
Sbjct: 231 LSILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQ 290

Query: 200 RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN------------------ 241
           +  F  DV  Y+ +  G C  K   KAL +L EM + G++P+                  
Sbjct: 291 KSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLIPYCSEEVDIY 350

Query: 242 ---------------LTTYNIVLKGYFRAGQIEEAW------------------RFFLEM 268
                          L  YN VL G      +++A+                  +FF  M
Sbjct: 351 RLIEERLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLXAMTGDNYTDNFEVNKFF--M 408

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
            K        +++ ++ G    G++  A ++F  MV  G   +V  YN +I  L   + +
Sbjct: 409 VKEMVRPXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRL 468

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           E   L+ +EM G G+ P   T+N +   LC   ++  AL+ V  M+    EP ++ Y +L
Sbjct: 469 EECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLL 528

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           ++  C             +M     LP++  Y+  I   FV+ K+ D   A ++  ++  
Sbjct: 529 VKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDG-FVKIKAVD--QALEIFRDICA 585

Query: 449 RGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           RG+ P    +N ++NG   +     A +IL      G +P
Sbjct: 586 RGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVP 625



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 131/286 (45%), Gaps = 37/286 (12%)

Query: 103 PSSFDH--AIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P+ F H        R  D      +V  M+     P  K + ++ ++     ++  A   
Sbjct: 485 PTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCKRKRSAEACNF 544

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCL 219
              M   G    + +++  +D   K K V++A  +F+    + +  DV++YN + NG+C 
Sbjct: 545 LAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCK 604

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
           VKR ++A ++L EMV +GL P++ TYN+++ G+ + G I++A+     M  ++ E +V+T
Sbjct: 605 VKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVIT 664

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK--------------- 324
           YTT++ G    G    A ++++ M   G  P+  ++ A+I  LCK               
Sbjct: 665 YTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCGWPDAALLYFREMG 724

Query: 325 ----KDSV------------ENAILVFE---EMVGKGYMPNSTTYN 351
                D++            +N  L FE   EMV KG  P+    N
Sbjct: 725 ERETPDTIVYVALITSFISNKNPTLAFEILKEMVAKGKFPDPLDKN 770



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 132/278 (47%), Gaps = 34/278 (12%)

Query: 230 LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289
           LKEM D G  P+  T   VL+ Y  + + ++A   F E+  R   +D    + +V  F  
Sbjct: 182 LKEMCDSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRGW-VDGHVLSILVLTFSK 240

Query: 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
            GE+ +A  + + M + G+  +  T+  +I    ++  V+ A+ +F++M   G+ P+ + 
Sbjct: 241 CGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSV 300

Query: 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
           Y+ +I GLC   E+E+AL  +  MK+   +P++Q  + LI Y  +  +I R +E  E+  
Sbjct: 301 YDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLIPYCSEEVDIYRLIE--ER-- 356

Query: 410 SGVCLPNLDT------YNILISSMFVRKKSDDLLVAGKLLIEM----------VDRGFM- 452
               L +LDT      YN +++ +   K  D    A  LL  M          V++ FM 
Sbjct: 357 ----LEDLDTEAMLLLYNSVLNGLVNGKSVDK---AYYLLXAMTGDNYTDNFEVNKFFMV 409

Query: 453 -----PRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
                P   +F+ V++GL   G   LA  + R   R G
Sbjct: 410 KEMVRPXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVG 447



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 37/169 (21%)

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT------------------ 360
           +  + K  S++   +  +EM   G+ P+  T   V++  C++                  
Sbjct: 166 LGAISKSGSIDLVEMRLKEMCDSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRGW 225

Query: 361 ----------------GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
                           GE+++A E + RM+D     N +T+ +LI  F     +++ L+L
Sbjct: 226 VDGHVLSILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQL 285

Query: 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
           F+KM      P++  Y+ LI  +  +K+ +  L    LL EM + G  P
Sbjct: 286 FKKMQKSGFAPDVSVYDALIGGLCAKKEIEKAL---HLLSEMKELGIDP 331


>gi|357504477|ref|XP_003622527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497542|gb|AES78745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 721

 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/350 (29%), Positives = 173/350 (49%), Gaps = 42/350 (12%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQ---KTF 141
           KA  FFN + +   ++H+P ++   +++  R ++       ++ ++  S G  +   + F
Sbjct: 100 KAFLFFNWI-HEKGFSHNPQTYFIMLEILGREKNLNIARNFLYSIEKRSNGEVKLEDRFF 158

Query: 142 AIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG 201
             +   Y  AG    +VK+F +M   G    + +FN++L +L K              RG
Sbjct: 159 NSLIRSYGEAGLFKESVKLFENMKLIGVSPGVVTFNSVLLVLLK--------------RG 204

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR-GLNPNLTTYNIVLKGYFRAGQIEE 260
                               RTN A EV  EM+   G+ P+  TYNI+++G+ +   ++E
Sbjct: 205 --------------------RTNMAKEVYDEMLKTYGVKPDTYTYNILIRGFCKNSMVDE 244

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG--GVLPSVATYNAM 318
            + FF EM    C+ DVVTY T+V G    G+IK A N+ +GM      + P V TY  +
Sbjct: 245 GFYFFKEMTSFDCDPDVVTYNTLVDGLCRAGKIKVAHNLVNGMSKKCKDLSPDVVTYTTL 304

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           I+  C+K  V+ A+ + EEM G+G  PN  TYN +I+GLC   + ++  E + +MK D  
Sbjct: 305 IRGYCRKQEVDEALDILEEMNGRGLKPNIVTYNTLIKGLCEAQKWDKMKEILEQMKGDGG 364

Query: 379 E-PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
             P+  T+N LI   C AG ++   ++FE M       +  +Y++LI ++
Sbjct: 365 SIPDACTFNTLINSHCCAGNLDEAFKVFENMKKLEVSADSASYSVLIRTL 414



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 174/353 (49%), Gaps = 17/353 (4%)

Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188
           +K+  + P   T+ I+   +      D     F  M    C   + ++NT++D LC+  K
Sbjct: 217 LKTYGVKPDTYTYNILIRGFCKNSMVDEGFYFFKEMTSFDCDPDVVTYNTLVDGLCRAGK 276

Query: 189 VEKAYNLFKVFRGKFK---ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245
           ++ A+NL      K K    DV++Y  +  G+C  +  ++AL++L+EM  RGL PN+ TY
Sbjct: 277 IKVAHNLVNGMSKKCKDLSPDVVTYTTLIRGYCRKQEVDEALDILEEMNGRGLKPNIVTY 336

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEI-DVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           N ++KG   A + ++      +MK     I D  T+ T+++     G +  A  VF+ M 
Sbjct: 337 NTLIKGLCEAQKWDKMKEILEQMKGDGGSIPDACTFNTLINSHCCAGNLDEAFKVFENMK 396

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK-------GYMPNSTTYNVVIRGL 357
              V    A+Y+ +I+ LC+K     A ++F+E+  K       G  P + +Y  + + L
Sbjct: 397 KLEVSADSASYSVLIRTLCQKGDYGKAEMLFDELFEKEILLSSYGPKPLAASYKCMFQYL 456

Query: 358 CHTGEMERALEFVGR-MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
           C  G+ ++A   + + MK    +P   +Y I+I   C  G  E G  L   M     LP+
Sbjct: 457 CENGKTKKAERVLRQLMKRGTQDP--LSYQIVILGHCKEGSYENGYGLLVWMLRRDFLPD 514

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
           +D Y+ LI   F+RK  D  L+A + L +M+   + P+  T++ +LN LL  G
Sbjct: 515 IDIYDYLIDG-FLRK--DKPLLAKETLEKMLKSSYKPQTSTWHSILNRLLEQG 564



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 137/277 (49%), Gaps = 12/277 (4%)

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR---KCEID 276
           +K   KA      + ++G + N  TY I+L+   R   +  A  F   ++KR   + +++
Sbjct: 95  IKVPTKAFLFFNWIHEKGFSHNPQTYFIMLEILGREKNLNIARNFLYSIEKRSNGEVKLE 154

Query: 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE 336
              + +++  +G  G  K +  +F+ M   GV P V T+N+++ VL K+     A  V++
Sbjct: 155 DRFFNSLIRSYGEAGLFKESVKLFENMKLIGVSPGVVTFNSVLLVLLKRGRTNMAKEVYD 214

Query: 337 EMVGK-GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
           EM+   G  P++ TYN++IRG C    ++    F   M   +C+P+V TYN L+   C A
Sbjct: 215 EMLKTYGVKPDTYTYNILIRGFCKNSMVDEGFYFFKEMTSFDCDPDVVTYNTLVDGLCRA 274

Query: 396 GEIERGLELFEKMGSGVC---LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
           G+I+    L   M S  C    P++ TY  LI     +++ D+ L    +L EM  RG  
Sbjct: 275 GKIKVAHNLVNGM-SKKCKDLSPDVVTYTTLIRGYCRKQEVDEAL---DILEEMNGRGLK 330

Query: 453 PRKFTFNRVLNGLLLIGNQGLAKEIL-RLQSRCGRLP 488
           P   T+N ++ GL         KEIL +++   G +P
Sbjct: 331 PNIVTYNTLIKGLCEAQKWDKMKEILEQMKGDGGSIP 367



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 58/313 (18%), Positives = 125/313 (39%), Gaps = 24/313 (7%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE-------HGCRQSLN 174
            + +   MK L +     +++++       G   +A  +F  + E       +G +    
Sbjct: 388 AFKVFENMKKLEVSADSASYSVLIRTLCQKGDYGKAEMLFDELFEKEILLSSYGPKPLAA 447

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
           S+  +   LC+  K +KA  + +    +   D +SY ++  G C          +L  M+
Sbjct: 448 SYKCMFQYLCENGKTKKAERVLRQLMKRGTQDPLSYQIVILGHCKEGSYENGYGLLVWML 507

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294
            R   P++  Y+ ++ G+ R  +   A     +M K   +    T+ +I++     G + 
Sbjct: 508 RRDFLPDIDIYDYLIDGFLRKDKPLLAKETLEKMLKSSYKPQTSTWHSILNRLLEQGCVH 567

Query: 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354
            +  V   M+   +  ++      +Q+L  +   + A  + E +   G+       + V+
Sbjct: 568 ESAGVIVMMLERNIRQNINFSTKCLQLLFDRGLQDKAFKITELIYKNGF---CVKMDEVV 624

Query: 355 RGLCHTGEMERALE----FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL-FEKMG 409
           + LC+     RALE     +  +K++E   ++   NI+I   C   +      L +E + 
Sbjct: 625 QFLCNK---RRALEACKLLLFSLKNNE-NIDIGLCNIVILDLCKLNKASEAFSLCYELVD 680

Query: 410 SG-----VCLPNL 417
            G     +CL +L
Sbjct: 681 KGLHQDLICLNDL 693


>gi|357166198|ref|XP_003580632.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Brachypodium distachyon]
          Length = 644

 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 141/549 (25%), Positives = 225/549 (40%), Gaps = 82/549 (14%)

Query: 8   PPKNHLHFFCIYRGLSPLTTTSPAPLPPAAADPAALASLILTSTDPRTLTQTLH--CPS- 64
           PP   +  +      SP T+ S AP  P+   P  + SL+L +  P TL   L   C + 
Sbjct: 26  PPPEWIEPYTDLADPSPYTSASAAPPTPSPWLPRVV-SLVLRAP-PATLAADLRAFCKTF 83

Query: 65  -LHWTPQLVDQIIK--RLWNHALKALHFFNIL------SYHP------------TYAHS- 102
            L  +P  V   ++  +L  H L +LHFF  L      + HP            ++AHS 
Sbjct: 84  LLRLSPAFVAAALRSPQLLTHPLPSLHFFRSLPNGADLAAHPQDLLNCYVSLLHSFAHSR 143

Query: 103 ---PSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
              P + DHA  L A LR  R    L+H         T  + A +     + G AD  + 
Sbjct: 144 EATPDAADHARQLVAELR-ARGDAVLMHL--------TPPSSASLIRSLAALGLADELLW 194

Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANGW 217
            + +M   G   S  ++N +LD L     ++ A N+F       + + DV+SYN++  G+
Sbjct: 195 AWSAMRLAGVEPSRVTYNCLLDGLANAGLLDTAINVFDAMSTEDRVRPDVVSYNILIKGY 254

Query: 218 CLVKRTNKALEVLKEMVDRG-LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID 276
           C   R   A+  L  M ++  L+P+  TY  +++ ++  G   +  R F EM++     D
Sbjct: 255 CRAGRAQDAMARLAHMREQAELSPDKVTYLTLMQLHYSEGTFSQCIRLFQEMEEMGMGKD 314

Query: 277 V-------------------------------------VTYTTIVHGFGVVGEIKRARNV 299
           +                                       YT ++   G  G    A  +
Sbjct: 315 IPQHAYVLVIGALCKEGKPFEGLAVFERMLKSGYPAKAAMYTALIDTMGKFGRENEAMLL 374

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
           F+ M   G+     TY  ++  LC+   ++ AIL F   V KG   N+  Y  +I G   
Sbjct: 375 FERMKASGLELDAITYGVIVNCLCRFGKLDEAILCFRNCVEKGIAVNAIFYTSLIDGFGK 434

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419
            G +++A E    MK     P+   YN+LI     AG ++    L+++M    C   + T
Sbjct: 435 AGMVDQAQELFEEMKVKGFVPDSYCYNVLIDGLAKAGRLDDACALYKRMEDDGCDQTVYT 494

Query: 420 YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479
           Y I+I  +F + K+++ +   K    M+D+G  P    F    NGL L G    A  IL 
Sbjct: 495 YTIIIDGLFKKHKNEEAI---KFWNTMIDKGITPTAAAFRTFANGLCLSGKFSRACRILD 551

Query: 480 LQSRCGRLP 488
             +  G +P
Sbjct: 552 ELAPMGVIP 560



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 123/263 (46%), Gaps = 5/263 (1%)

Query: 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVIS 209
           G+ + A+ +F  M   G      ++  I++ LC+  K+++A   F+  V +G    + I 
Sbjct: 366 GRENEAMLLFERMKASGLELDAITYGVIVNCLCRFGKLDEAILCFRNCVEKG-IAVNAIF 424

Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
           Y  + +G+      ++A E+ +EM  +G  P+   YN+++ G  +AG++++A   +  M+
Sbjct: 425 YTSLIDGFGKAGMVDQAQELFEEMKVKGFVPDSYCYNVLIDGLAKAGRLDDACALYKRME 484

Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
              C+  V TYT I+ G     + + A   ++ M++ G+ P+ A +      LC      
Sbjct: 485 DDGCDQTVYTYTIIIDGLFKKHKNEEAIKFWNTMIDKGITPTAAAFRTFANGLCLSGKFS 544

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
            A  + +E+   G +P  T +  +I  LC  G  ++A +    +     E   +   ++I
Sbjct: 545 RACRILDELAPMGVIPE-TAHEDMINVLCKAGRFKQACKLADGIVQKGREIPGRVRTMMI 603

Query: 390 RYFCDAGEIERGLELF-EKMGSG 411
                AG  +  ++L   K+G G
Sbjct: 604 TALRKAGNTDLAVKLVHSKIGIG 626



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 81/188 (43%), Gaps = 2/188 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L   MK     P    + ++ +    AG+ D A  ++  M + GC Q++ ++  I+D L 
Sbjct: 444 LFEEMKVKGFVPDSYCYNVLIDGLAKAGRLDDACALYKRMEDDGCDQTVYTYTIIIDGLF 503

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K+ K E+A   +     K       ++   ANG CL  + ++A  +L E+   G+ P  T
Sbjct: 504 KKHKNEEAIKFWNTMIDKGITPTAAAFRTFANGLCLSGKFSRACRILDELAPMGVIPE-T 562

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            +  ++    +AG+ ++A +    + ++  EI     T ++      G    A  +    
Sbjct: 563 AHEDMINVLCKAGRFKQACKLADGIVQKGREIPGRVRTMMITALRKAGNTDLAVKLVHSK 622

Query: 304 VNGGVLPS 311
           +  G + S
Sbjct: 623 IGIGYVRS 630


>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Glycine max]
          Length = 746

 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 171/367 (46%), Gaps = 6/367 (1%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLG-PTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           F+  ID   ++       +L+  MK  ++  P   T+  + + +  AG  DRA ++F  M
Sbjct: 360 FNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQM 419

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
           +E G + ++ + NT++D LCK  +V +A   F   +GK  K +  +Y  + + +C V   
Sbjct: 420 NEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNI 479

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           N+A++  +EM+  G +P+   Y  ++ G   AG++ +A     ++K     +D   Y  +
Sbjct: 480 NRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVL 539

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           + GF    +++R   +   M   GV P   TYN +I  L K      A  V E+M+ +G 
Sbjct: 540 ISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGL 599

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRM-KDDECEPNVQTYNILIRYFCDAGEIERGL 402
            P+  TY  +I   C    ++  ++  G M    +  PN   YNILI   C   +++R +
Sbjct: 600 RPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAI 659

Query: 403 ELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462
            L E M      PN  TYN ++  +  +K    L  A +L+  MV+    P   T   + 
Sbjct: 660 SLMEDMKVKRVRPNTTTYNAILKGVRDKKM---LHKAFELMDRMVEEACRPDYITMEVLT 716

Query: 463 NGLLLIG 469
             L  +G
Sbjct: 717 EWLSAVG 723



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 170/348 (48%), Gaps = 11/348 (3%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            R RD + +  L+  M+   + P+  TF I+      A + D A+++F  +   G    +
Sbjct: 292 GRGRDIKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEALQVFDRLRGKGGSNWV 351

Query: 174 NS------FNTILDLLCKEKKVEKAYNLFKVFR-GKF-KADVISYNVIANGWCLVKRTNK 225
                   FNT++D LCK  K E   +L +  + G   + + ++YN + +G+      ++
Sbjct: 352 GVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDR 411

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
           A E+ ++M + G+ PN+ T N ++ G  + G++  A  FF EMK +  + +  TYT ++ 
Sbjct: 412 AHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALIS 471

Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
            F  V  I RA   F+ M++ G  P    Y ++I  LC    + +A +V  ++   G+  
Sbjct: 472 AFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSL 531

Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
           + + YNV+I G C   ++ER  E +  M++   +P+  TYN LI Y    G+     ++ 
Sbjct: 532 DRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVM 591

Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
           EKM      P++ TY  +I +   +K  D+ +   K+  EM     +P
Sbjct: 592 EKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGM---KIFGEMCSTSKVP 636



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 135/316 (42%), Gaps = 5/316 (1%)

Query: 71  LVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMK 130
           LVD + K    H  +A+ FFN +       ++ +++   I     + +          M 
Sbjct: 434 LVDGLCKHGRVH--RAVEFFNEMKGKGLKGNA-ATYTALISAFCGVNNINRAMQCFEEML 490

Query: 131 SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190
           S    P    +  +      AG+ + A  +   +   G     + +N ++   CK+KK+E
Sbjct: 491 SSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLE 550

Query: 191 KAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL 249
           + Y L  ++     K D I+YN + +          A +V+++M+  GL P++ TY  ++
Sbjct: 551 RVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAII 610

Query: 250 KGYFRAGQIEEAWRFFLEM-KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
             Y     ++E  + F EM    K   + V Y  ++       ++ RA ++ + M    V
Sbjct: 611 HAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRV 670

Query: 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
            P+  TYNA+++ +  K  +  A  + + MV +   P+  T  V+   L   GE+E+   
Sbjct: 671 RPNTTTYNAILKGVRDKKMLHKAFELMDRMVEEACRPDYITMEVLTEWLSAVGEIEKLKH 730

Query: 369 FVGRMKDDECEPNVQT 384
           FV   +D     + QT
Sbjct: 731 FVEGYQDSSYPASSQT 746



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 96/408 (23%), Positives = 176/408 (43%), Gaps = 33/408 (8%)

Query: 85  KALHFFNILS-----YHPTYAHSPSS-FDHAIDLAARLRDYRTVWTLVHRMKSLS---LG 135
           K+L F   LS     +HP   HS SS F  +++LA+R  + +T    +HR +  +   L 
Sbjct: 82  KSLQFLKYLSAKAPQHHP---HSLSSVFQGSLELASRHPNSQTHLLSLHRFRKSTHPTLP 138

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
            T K+ +++ +   +A   + ++ +F  +      +S    + +L +L K  +   A ++
Sbjct: 139 LTPKSASLLLQCLENARLVNDSLLLFNQLDPSS--KSPQLCHGLLRVLLKSGRAGDALHV 196

Query: 196 FKVFRGKFKADVISYNVIANGWCLVKRT---NKALEVLKEMVDRGLNPN---LTTYNIVL 249
                       ++  ++        R+    + + ++ ++ +RG+ P+   LT     L
Sbjct: 197 LDEMPQANSGFSVTGEIVFGELVRSGRSFPDGEVVGLVAKLGERGVFPDGFKLTQLVGKL 256

Query: 250 KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
            G  + G    AW     + +    +D  +   ++   G   +IKR   +   M    + 
Sbjct: 257 CGDQKNGV---AWEVLHCVMRLGGAVDAASCNALLTWLGRGRDIKRMNELLAEMEKRKIR 313

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGK------GYMPNSTTYNVVIRGLCHTGEM 363
           PSV T+  ++  LCK   ++ A+ VF+ + GK      G  P+   +N +I GLC  G+ 
Sbjct: 314 PSVVTFGILVNHLCKARRIDEALQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKE 373

Query: 364 ERALEFVGRMK-DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
           E  L  +  MK  +   PN  TYN LI  F  AG  +R  ELF +M      PN+ T N 
Sbjct: 374 EDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNT 433

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
           L+  +    K   +  A +   EM  +G      T+  +++    + N
Sbjct: 434 LVDGLC---KHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNN 478



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 101/229 (44%), Gaps = 24/229 (10%)

Query: 286 GFGVVGEI------KRARNVFDGMVNG--------GVLPSVATYNAMIQVLCKKDSVENA 331
           GF V GEI      +  R+  DG V G        GV P       ++  LC       A
Sbjct: 206 GFSVTGEIVFGELVRSGRSFPDGEVVGLVAKLGERGVFPDGFKLTQLVGKLCGDQKNGVA 265

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
             V   ++  G   ++ + N ++  L    +++R  E +  M+  +  P+V T+ IL+ +
Sbjct: 266 WEVLHCVMRLGGAVDAASCNALLTWLGRGRDIKRMNELLAEMEKRKIRPSVVTFGILVNH 325

Query: 392 FCDAGEIERGLELFEKM-GSGVC-----LPNLDTYNILISSMF-VRKKSDDLLVAGKLLI 444
            C A  I+  L++F+++ G G        P++  +N LI  +  V K+ D L +  ++ +
Sbjct: 326 LCKARRIDEALQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKM 385

Query: 445 EMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQFKL 493
             ++R   P   T+N +++G    GN   A E+ R  +  G  P    L
Sbjct: 386 GNINR---PNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITL 431


>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
 gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
          Length = 631

 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/312 (30%), Positives = 164/312 (52%), Gaps = 8/312 (2%)

Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVI 213
           + A+ +F    + G    + +++ ++D   K  +  KA  +F  + +     D + YNV+
Sbjct: 317 EEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVL 376

Query: 214 ANGWCLVK--RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
            +  CL K  + ++ALE+L++M  +G+ P+  TYNIV+      G+ E+A+ FF  MK+R
Sbjct: 377 IS--CLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRR 434

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
           K   DVVTY T+++G   +     A ++FD M     +P + T+  +I  L K   +E+A
Sbjct: 435 KHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDA 494

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
           +     +V  G+ PNS  YN +I G C +G++++  E    M +  C P+  TY IL+  
Sbjct: 495 LEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLG 554

Query: 392 FCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
           F   G     +EL ++M      P L TYN+LI S+ +  + +D   A  L  EM+ +GF
Sbjct: 555 FSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVED---AYTLFKEMIAKGF 611

Query: 452 MPRKFTFNRVLN 463
            P   T++ + N
Sbjct: 612 NPDMQTYSALPN 623



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 177/382 (46%), Gaps = 7/382 (1%)

Query: 92  ILSYHPTYAHSPSSFDHAIDLAARLR--DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149
           +L +   +A +  +F + I + A  R      V + +   +      +   +  I + ++
Sbjct: 218 LLHHMTAHACARDAFTYGILVNAHCRAGQMHEVASFMELARHDGCALSAVNYNFIIQGFI 277

Query: 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVI 208
             G+   A ++F S         + ++N +L  LCK K++E+A  LF+   +G    DV 
Sbjct: 278 RCGRLAEATQLFESTMTKESVPDVFTYN-LLIALCKSKQLEEALTLFQEAEQGGVVLDVF 336

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           +Y+ + + +    R  KALEV   M   G  P+   YN+++    + G+++EA     +M
Sbjct: 337 TYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDM 396

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
            ++    D  TY  ++      G  ++A + F  M      P V TYN ++  L K    
Sbjct: 397 NRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRT 456

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           + A  +F+EM     MP+ TT+  +I  L   G ME ALE   R+      PN   YN L
Sbjct: 457 DEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNAL 516

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           I  FC +G++++G ELF+ M    C P+  TY IL+     R  +    +A +LL EMV 
Sbjct: 517 ISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTS---MAMELLQEMVR 573

Query: 449 RGFMPRKFTFNRVLNGLLLIGN 470
            G  P   T+N ++  L + G 
Sbjct: 574 EGHTPALATYNVLIRSLSMAGQ 595



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 163/364 (44%), Gaps = 7/364 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMK-SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           +F  A+     +R      TL   M+ +    P    +  +   Y  AG  DRA+ +F  
Sbjct: 91  AFTAAMHWLCEVRRVEQAMTLFDDMRETCDCAPDVVAYNTLIAGYCKAGDGDRALDMFRR 150

Query: 164 MHEHG-CRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVK 221
           + + G C+ +  SF+T++  LCK  +   A  +F+   G   KADV   N + +  C + 
Sbjct: 151 LKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQEMLGAGLKADVNVCNTLIHCTCRLG 210

Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
              +A  +L  M       +  TY I++  + RAGQ+ E   F    +   C +  V Y 
Sbjct: 211 MLRQARRLLHHMTAHACARDAFTYGILVNAHCRAGQMHEVASFMELARHDGCALSAVNYN 270

Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
            I+ GF   G +  A  +F+  +    +P V TYN +I  LCK   +E A+ +F+E    
Sbjct: 271 FIIQGFIRCGRLAEATQLFESTMTKESVPDVFTYNLLI-ALCKSKQLEEALTLFQEAEQG 329

Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
           G + +  TY+ ++      G   +ALE    M+   C P+   YN+LI      G+++  
Sbjct: 330 GVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEA 389

Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
           LEL E M     +P+  TYNI+I  +    + +    A      M  R   P   T+N +
Sbjct: 390 LELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEK---AYSFFGMMKRRKHSPDVVTYNTL 446

Query: 462 LNGL 465
           LNGL
Sbjct: 447 LNGL 450



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 124/263 (47%), Gaps = 36/263 (13%)

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186
           + M+     P    + ++       GK D A+++   M+  G      ++N ++D+L   
Sbjct: 359 YNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSC 418

Query: 187 KKVEKAYNLFKVF-RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT- 244
            + EKAY+ F +  R K   DV++YN + NG   ++RT++A ++  EM      P+LTT 
Sbjct: 419 GRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTF 478

Query: 245 ----------------------------------YNIVLKGYFRAGQIEEAWRFFLEMKK 270
                                             YN ++ G+ R+GQ+++ +  F +M +
Sbjct: 479 GTLIDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIE 538

Query: 271 RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330
             C  D +TYT +V GF   G    A  +   MV  G  P++ATYN +I+ L     VE+
Sbjct: 539 CSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVED 598

Query: 331 AILVFEEMVGKGYMPNSTTYNVV 353
           A  +F+EM+ KG+ P+  TY+ +
Sbjct: 599 AYTLFKEMIAKGFNPDMQTYSAL 621



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 160/381 (41%), Gaps = 45/381 (11%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG-CRQSLNSFNTILDLLCKE 186
           R K + L     T  I A  +  AG  D A+ +   M     C+    +F   +  LC+ 
Sbjct: 45  RQKGVGLSEVTCTECIQA--FGRAGDLDAAMGMLDDMRRGNFCQPDTVAFTAAMHWLCEV 102

Query: 187 KKVEKAYNLFKVFRGKFKA--DVISYNVIANGW--------------------------- 217
           ++VE+A  LF   R       DV++YN +  G+                           
Sbjct: 103 RRVEQAMTLFDDMRETCDCAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAV 162

Query: 218 ---------CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
                    C + R   AL V +EM+  GL  ++   N ++    R G + +A R    M
Sbjct: 163 SFDTLVIFLCKMSRATDALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHM 222

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
               C  D  TY  +V+     G++    +  +   + G   S   YN +IQ   +   +
Sbjct: 223 TAHACARDAFTYGILVNAHCRAGQMHEVASFMELARHDGCALSAVNYNFIIQGFIRCGRL 282

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
             A  +FE  + K  +P+  TYN++I  LC + ++E AL      +      +V TY+ L
Sbjct: 283 AEATQLFESTMTKESVPDVFTYNLLI-ALCKSKQLEEALTLFQEAEQGGVVLDVFTYSYL 341

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           +  F  AG   + LE+F  M    C+P+   YN+LIS +  + K D+ L   +LL +M  
Sbjct: 342 MDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEAL---ELLEDMNR 398

Query: 449 RGFMPRKFTFNRVLNGLLLIG 469
           +G MP   T+N V++ L   G
Sbjct: 399 KGIMPDCRTYNIVIDVLSSCG 419



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 129/292 (44%), Gaps = 7/292 (2%)

Query: 200 RGKF-KADVISYNVIANGWCLVKRTNKALEVLKEMVDR-GLNPNLTTYNIVLKGYFRAGQ 257
           RG F + D +++    +  C V+R  +A+ +  +M +     P++  YN ++ GY +AG 
Sbjct: 81  RGNFCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDMRETCDCAPDVVAYNTLIAGYCKAGD 140

Query: 258 IEEAWRFFLEMKKR-KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316
            + A   F  +K+   C+ + V++ T+V     +     A  VF  M+  G+   V   N
Sbjct: 141 GDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQEMLGAGLKADVNVCN 200

Query: 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376
            +I   C+   +  A  +   M       ++ TY +++   C  G+M     F+   + D
Sbjct: 201 TLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGILVNAHCRAGQMHEVASFMELARHD 260

Query: 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
            C  +   YN +I+ F   G +    +LFE   +   +P++ TYN+LI+      KS  L
Sbjct: 261 GCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESVPDVFTYNLLIALC----KSKQL 316

Query: 437 LVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             A  L  E    G +   FT++ +++     G    A E+     + G +P
Sbjct: 317 EEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMP 368



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 96/215 (44%), Gaps = 1/215 (0%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  ID+ +    Y   ++    MK     P   T+  +        + D A  +F  M
Sbjct: 407 TYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEM 466

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNL-FKVFRGKFKADVISYNVIANGWCLVKRT 223
             + C   L +F T++D L K  ++E A     ++ +     +   YN + +G+C   + 
Sbjct: 467 QANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQV 526

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           +K  E+ ++M++    P+  TY I++ G+ R G    A     EM +      + TY  +
Sbjct: 527 DKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVL 586

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           +    + G+++ A  +F  M+  G  P + TY+A+
Sbjct: 587 IRSLSMAGQVEDAYTLFKEMIAKGFNPDMQTYSAL 621



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 38/187 (20%), Positives = 77/187 (41%), Gaps = 41/187 (21%)

Query: 303 MVNGGVLPSVATYNAMIQVLCK-----------------------------------KDS 327
           ++  G+     T  AM++ +CK                                      
Sbjct: 9   LLKAGLPVDAHTATAMVKEVCKLGRTELLAELLAELRQKGVGLSEVTCTECIQAFGRAGD 68

Query: 328 VENAILVFEEM-VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD-ECEPNVQTY 385
           ++ A+ + ++M  G    P++  +   +  LC    +E+A+     M++  +C P+V  Y
Sbjct: 69  LDAAMGMLDDMRRGNFCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDMRETCDCAPDVVAY 128

Query: 386 NILIRYFCDAGEIERGLELFEKMGS-GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLI 444
           N LI  +C AG+ +R L++F ++   G C PN  +++ L+  +    ++ D L    +  
Sbjct: 129 NTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALA---VFQ 185

Query: 445 EMVDRGF 451
           EM+  G 
Sbjct: 186 EMLGAGL 192


>gi|255661036|gb|ACU25687.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 376

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 161/315 (51%), Gaps = 5/315 (1%)

Query: 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173
            R++D   +W L+ R  S ++     +F I+       G+ D+A+ I+  M + G  +  
Sbjct: 39  GRIKDCFDLWELMGRKGSQNV----VSFNIMMRGLFDNGEVDKAISIWELMKKSGFVEDS 94

Query: 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKE 232
            ++  I+D  CK   + K+ ++ ++  GK    D  +Y+ + NG C   + +KA+ VL  
Sbjct: 95  ITYGIIIDGFCKNGYINKSLHVLEIAEGKGGVLDAFAYSAMINGLCKEAKLDKAVSVLNG 154

Query: 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292
           M+  G  PN   YN ++ G+  A + ++A R F EM    C   +VTY T+++G      
Sbjct: 155 MIKSGCKPNAHVYNTLINGFVGASKFDDAIRVFREMGSMDCSPTIVTYHTLINGLCKGER 214

Query: 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV 352
              A ++   M+  G  P V TY+ +++ LC+   VE A+ ++ +++ KG+ P+   +N+
Sbjct: 215 FSEAYDLVKEMLEKGWKPCVITYSLLMKGLCQGHKVEMALQLWNQVLSKGFKPDVQMHNI 274

Query: 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412
           +I GLC  G+ + AL     M    C PN+ T+N L+  F   G+I   L ++ ++    
Sbjct: 275 LIHGLCSVGKTQHALMLYFDMNHWNCAPNLVTHNTLMEGFYKDGDIRNALVIWARILRSG 334

Query: 413 CLPNLDTYNILISSM 427
             P++ +YNI +  +
Sbjct: 335 LQPDIISYNITLKGL 349



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 166/339 (48%), Gaps = 5/339 (1%)

Query: 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187
            M    + P    +  +   ++  G+      ++  M   G  Q++ SFN ++  L    
Sbjct: 15  EMAESKVSPDAVVYNAMLIGFLRVGRIKDCFDLWELMGRKG-SQNVVSFNIMMRGLFDNG 73

Query: 188 KVEKAYNLFKVFR-GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
           +V+KA +++++ +   F  D I+Y +I +G+C     NK+L VL+    +G   +   Y+
Sbjct: 74  EVDKAISIWELMKKSGFVEDSITYGIIIDGFCKNGYINKSLHVLEIAEGKGGVLDAFAYS 133

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
            ++ G  +  ++++A      M K  C+ +   Y T+++GF    +   A  VF  M + 
Sbjct: 134 AMINGLCKEAKLDKAVSVLNGMIKSGCKPNAHVYNTLINGFVGASKFDDAIRVFREMGSM 193

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366
              P++ TY+ +I  LCK +    A  + +EM+ KG+ P   TY+++++GLC   ++E A
Sbjct: 194 DCSPTIVTYHTLINGLCKGERFSEAYDLVKEMLEKGWKPCVITYSLLMKGLCQGHKVEMA 253

Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
           L+   ++     +P+VQ +NILI   C  G+ +  L L+  M    C PNL T+N L+  
Sbjct: 254 LQLWNQVLSKGFKPDVQMHNILIHGLCSVGKTQHALMLYFDMNHWNCAPNLVTHNTLMEG 313

Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            +   K  D+  A  +   ++  G  P   ++N  L GL
Sbjct: 314 FY---KDGDIRNALVIWARILRSGLQPDIISYNITLKGL 349



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 114/215 (53%), Gaps = 1/215 (0%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P    +  +   +V A K D A+++F  M    C  ++ +++T+++ LCK ++  +AY+L
Sbjct: 162 PNAHVYNTLINGFVGASKFDDAIRVFREMGSMDCSPTIVTYHTLINGLCKGERFSEAYDL 221

Query: 196 FK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
            K +    +K  VI+Y+++  G C   +   AL++  +++ +G  P++  +NI++ G   
Sbjct: 222 VKEMLEKGWKPCVITYSLLMKGLCQGHKVEMALQLWNQVLSKGFKPDVQMHNILIHGLCS 281

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G+ + A   + +M    C  ++VT+ T++ GF   G+I+ A  ++  ++  G+ P + +
Sbjct: 282 VGKTQHALMLYFDMNHWNCAPNLVTHNTLMEGFYKDGDIRNALVIWARILRSGLQPDIIS 341

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349
           YN  ++ LC  + +  AIL   + + K   P   T
Sbjct: 342 YNITLKGLCSCNRISFAILFLHDALTKKIFPTIIT 376



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 124/222 (55%), Gaps = 7/222 (3%)

Query: 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKAD----VI 208
           K D+AV +   M + GC+ + + +NT+++      K + A    +VFR     D    ++
Sbjct: 144 KLDKAVSVLNGMIKSGCKPNAHVYNTLINGFVGASKFDDA---IRVFREMGSMDCSPTIV 200

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
           +Y+ + NG C  +R ++A +++KEM+++G  P + TY++++KG  +  ++E A + + ++
Sbjct: 201 TYHTLINGLCKGERFSEAYDLVKEMLEKGWKPCVITYSLLMKGLCQGHKVEMALQLWNQV 260

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
             +  + DV  +  ++HG   VG+ + A  ++  M +    P++ T+N +++   K   +
Sbjct: 261 LSKGFKPDVQMHNILIHGLCSVGKTQHALMLYFDMNHWNCAPNLVTHNTLMEGFYKDGDI 320

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
            NA++++  ++  G  P+  +YN+ ++GLC    +  A+ F+
Sbjct: 321 RNALVIWARILRSGLQPDIISYNITLKGLCSCNRISFAILFL 362


>gi|224084127|ref|XP_002307219.1| predicted protein [Populus trichocarpa]
 gi|222856668|gb|EEE94215.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/388 (27%), Positives = 185/388 (47%), Gaps = 13/388 (3%)

Query: 83  ALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRM-KSLSLGPTQKTF 141
           A +AL  F   S  P + HS S++   I      R + TV  L+  M KS+ L P +  F
Sbjct: 28  APQALQTFEWASKLPNFTHSQSTYRALIHKLLTFRRFHTVQHLLDEMPKSIGLPPDESIF 87

Query: 142 AIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK-KVEKAYNLFKVFR 200
             I      A      +K+   +  +G   SL  FN+ILD+L KE   + + +   K+  
Sbjct: 88  LTIIRGLGRARMIRDVIKVLDLVTRYGKNPSLKIFNSILDVLVKEDIDLARKFYRKKMMG 147

Query: 201 GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
              + D  +Y ++  G CL  R  +  ++L+ +  RGL PN+  YN +L      G++  
Sbjct: 148 AGIQGDDYTYGILMKGLCLTNRIGEGFKLLQVIKSRGLKPNVVIYNTLLHALCNNGKVGR 207

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
           A     E+K    E + VT+  ++ G+       +A  + +   + G +P V T   +++
Sbjct: 208 ARSLMNEIK----EPNDVTFNVLICGYCKEDNFVQALVLLEKSFSLGFVPDVVTVTKVVE 263

Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
           +LC    V  A+ + E +  KG + +   +N +I+G C  G+++     +  M+   C P
Sbjct: 264 ILCNVGRVTEAVEILERVESKGGVVDVVAHNTLIKGFCKFGKVKLGHGLLKEMERKGCLP 323

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAG 440
           N  TYN LI  FC++G +E  L++F  M +     N  T++ LI  +F R +++D    G
Sbjct: 324 NADTYNALISGFCESGMLESALDMFNDMKTDGINCNFVTFDTLIKGLFSRGRTED----G 379

Query: 441 KLLIEMVD--RGFMPRKFT-FNRVLNGL 465
             ++E+++  RG      + +N VL GL
Sbjct: 380 FKILELMEETRGVCGGSISPYNSVLYGL 407



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 171/368 (46%), Gaps = 10/368 (2%)

Query: 103 PSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLG--PTQKTFAIIAERYVSAGKADRAVKI 160
           P+     + +    ++   V  LV   KS SLG  P   T   + E   + G+   AV+I
Sbjct: 218 PNDVTFNVLICGYCKEDNFVQALVLLEKSFSLGFVPDVVTVTKVVEILCNVGRVTEAVEI 277

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF-RGKFKADVISYNVIANGWCL 219
              +   G    + + NT++   CK  KV+  + L K   R     +  +YN + +G+C 
Sbjct: 278 LERVESKGGVVDVVAHNTLIKGFCKFGKVKLGHGLLKEMERKGCLPNADTYNALISGFCE 337

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK--CEIDV 277
                 AL++  +M   G+N N  T++ ++KG F  G+ E+ ++    M++ +  C   +
Sbjct: 338 SGMLESALDMFNDMKTDGINCNFVTFDTLIKGLFSRGRTEDGFKILELMEETRGVCGGSI 397

Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
             Y ++++G      +  A      M N  + P     +  I   C++ +++ A  V+++
Sbjct: 398 SPYNSVLYGLYRKNMLNEALEFLMKMEN--LFPRAVDRSLRILGFCEEGAIQEAKRVYDQ 455

Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
           M  +G +P++  Y+ +I G C  G +  ALE +  M      P   T+N LI  FC  G+
Sbjct: 456 MNNEGGIPSALVYDCLIHGFCQEGCVREALELMNEMVFLGYFPVASTFNALISGFCRLGK 515

Query: 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
               L+L E M    C+P+  +Y+ LI ++  RKKS     A  LL++MV+ G  P    
Sbjct: 516 DGSALKLLEDMVGRGCVPDTGSYSPLIDAL-CRKKS--FQKAASLLLQMVENGITPDYLI 572

Query: 458 FNRVLNGL 465
           +N + + L
Sbjct: 573 WNSLFHCL 580



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 69/144 (47%), Gaps = 1/144 (0%)

Query: 183 LCKEKKVEKAYNLFKVFRGKFK-ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
            C+E  +++A  ++     +      + Y+ + +G+C      +ALE++ EMV  G  P 
Sbjct: 440 FCEEGAIQEAKRVYDQMNNEGGIPSALVYDCLIHGFCQEGCVREALELMNEMVFLGYFPV 499

Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
            +T+N ++ G+ R G+   A +   +M  R C  D  +Y+ ++         ++A ++  
Sbjct: 500 ASTFNALISGFCRLGKDGSALKLLEDMVGRGCVPDTGSYSPLIDALCRKKSFQKAASLLL 559

Query: 302 GMVNGGVLPSVATYNAMIQVLCKK 325
            MV  G+ P    +N++   L ++
Sbjct: 560 QMVENGITPDYLIWNSLFHCLSQQ 583



 Score = 42.4 bits (98), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 3/105 (2%)

Query: 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179
           R    L++ M  L   P   TF  +   +   GK   A+K+   M   GC     S++ +
Sbjct: 482 REALELMNEMVFLGYFPVASTFNALISGFCRLGKDGSALKLLEDMVGRGCVPDTGSYSPL 541

Query: 180 LDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRT 223
           +D LC++K  +KA + L ++       D + +N + +  CL ++T
Sbjct: 542 IDALCRKKSFQKAASLLLQMVENGITPDYLIWNSLFH--CLSQQT 584


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 148/312 (47%), Gaps = 36/312 (11%)

Query: 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG---------- 201
           G+ +   KIF  M+  GC+  L   NT +D + K   VEK   +F+  +G          
Sbjct: 510 GRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSY 569

Query: 202 --------------------------KFKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235
                                      F  D  +YN + +G+C   + +KA EVL+EM  
Sbjct: 570 SILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKV 629

Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295
           + + P + TY  ++ G  +  +++EA+  F E K +  E++V+ Y++++ GFG VG I  
Sbjct: 630 KRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDE 689

Query: 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR 355
           A  + + M+  G+ P+V T+N+++  L K + +  A++ F+ M      PN+ TY+++I 
Sbjct: 690 AYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILIN 749

Query: 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415
           GLC   +  +A  F   M+     PNV TY  +I      G I     LFE+  +    P
Sbjct: 750 GLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERFKANGGTP 809

Query: 416 NLDTYNILISSM 427
           +  ++N LI  M
Sbjct: 810 DAASFNALIEGM 821



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/405 (26%), Positives = 186/405 (45%), Gaps = 9/405 (2%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII 144
           K L   ++L Y      +P+  D  +    R R       ++  M+ L   P    + ++
Sbjct: 133 KVLEEMSVLGYG---VPNPACAD-LVSALVRTRRLDDAERVIAAMRRLKFRPAFSAYTVL 188

Query: 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-F 203
                 A + +RA+++   M E G    +  F T++  L +E +VE A  L    +G   
Sbjct: 189 IGAMAEARQPERALELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCL 248

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
           + D++ YNV  + +      + A +   E+  +GL P+  +Y  ++    +AG++ EA  
Sbjct: 249 EPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEE 308

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
            F +M+  +       Y T++ G+G  G+ + A  + D +   G +PSV ++N+++  L 
Sbjct: 309 LFGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLG 368

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
           KK  V+ A+ +FE M  K   PNS+TYN++I  LC  G++E A      M+     PN+ 
Sbjct: 369 KKRKVDEALTLFEAM-KKDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLL 427

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
           T NI++   C A + E   E+FE      C PN  TY  LI  +  +   DD   A +L 
Sbjct: 428 TVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDD---AYRLF 484

Query: 444 IEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
             M+D G       +  ++    + G +    +I +  +R G  P
Sbjct: 485 ENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQP 529



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 168/363 (46%), Gaps = 5/363 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           SF+  +    + R      TL   MK     P   T+ II +    AGK + A  I   M
Sbjct: 359 SFNSILTCLGKKRKVDEALTLFEAMKK-DAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEM 417

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
              G   +L + N ++D LCK KK E AY +F+    +    + ++Y  + +G       
Sbjct: 418 EHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNV 477

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           + A  + + M+D G N N   Y  +++ +F  G+ E+  + F EM +R C+ D+    T 
Sbjct: 478 DDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTY 537

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +      G++++ R +F+ +   G LP V +Y+ +I  L K         +F  M  +G+
Sbjct: 538 MDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGF 597

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
             ++  YN V+ G C +G++++A E +  MK     P V TY  +I        ++    
Sbjct: 598 ALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYM 657

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           LFE+  S     N+  Y+ LI       + D+  +   +L EM+ +G  P  +T+N +++
Sbjct: 658 LFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYL---ILEEMMKKGLTPNVYTWNSLMD 714

Query: 464 GLL 466
            L+
Sbjct: 715 ALV 717



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 177/402 (44%), Gaps = 38/402 (9%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L  +M++    P    +  +   Y SAG+ + A K+   + E GC  S+ SFN+IL  L 
Sbjct: 309 LFGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLG 368

Query: 185 KEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
           K++KV++A  LF+  +   + +  +YN+I +  C+  +  +A  +  EM   GL PNL T
Sbjct: 369 KKRKVDEALTLFEAMKKDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLT 428

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
            NI++    +A + E A+  F    +R C  + VTY +++ G G  G +  A  +F+ M+
Sbjct: 429 VNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENML 488

Query: 305 NG-----------------------------------GVLPSVATYNAMIQVLCKKDSVE 329
           +                                    G  P +   N  +  + K   VE
Sbjct: 489 DTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVE 548

Query: 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389
               +FE++ G G++P+  +Y+++I GL   G+          MK      + + YN ++
Sbjct: 549 KGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVV 608

Query: 390 RYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449
             FC +G++++  E+ E+M      P + TY  +I  +    K D L  A  L  E   +
Sbjct: 609 DGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGL---AKIDRLDEAYMLFEEAKSK 665

Query: 450 GFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491
           G       ++ +++G   +G    A  IL    + G  P  +
Sbjct: 666 GIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVY 707



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 105/403 (26%), Positives = 178/403 (44%), Gaps = 39/403 (9%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           S+++  ID+          + +   M+   L P   T  I+ +R   A K + A ++F +
Sbjct: 392 STYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFET 451

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKR 222
             + GC  +  ++ +++D L K+  V+ AY LF+ +      A+ + Y  +   + +  R
Sbjct: 452 ASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGR 511

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
                ++ KEM  RG  P+LT  N  +   F+AG +E+    F ++K      DV +Y+ 
Sbjct: 512 KEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSI 571

Query: 283 IVHGFGVVGEIKRARNVF-------------------DGMVNGGVL-------------- 309
           ++HG    G+ +   ++F                   DG    G L              
Sbjct: 572 LIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKR 631

Query: 310 --PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367
             P+VATY ++I  L K D ++ A ++FEE   KG   N   Y+ +I G    G ++ A 
Sbjct: 632 VPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAY 691

Query: 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
             +  M      PNV T+N L+     A EI   L  F+ M    C PN  TY+ILI+ +
Sbjct: 692 LILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGL 751

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
              +K +   V  +   EM  +G +P   T+  ++ GL  +GN
Sbjct: 752 CRVQKYNKAFVFWQ---EMQKQGLVPNVVTYTTMIAGLAKVGN 791



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 165/352 (46%), Gaps = 13/352 (3%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            LV  +K   L P    + +  + +  AG  D A K F  +   G +    S+ +++ +L
Sbjct: 238 ALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVL 297

Query: 184 CKEKKVEKAYNLFKVFRGKFKAD-----VISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
           CK  ++ +A  LF    G+ + +       +YN +  G+    +   A ++L ++ +RG 
Sbjct: 298 CKAGRLSEAEELF----GQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGC 353

Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
            P++ ++N +L    +  +++EA   F  MKK   E +  TY  I+    + G+++ A  
Sbjct: 354 IPSVVSFNSILTCLGKKRKVDEALTLFEAMKK-DAEPNSSTYNIIIDMLCMAGKVEEAYM 412

Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
           + D M + G+ P++ T N M+  LCK    E A  +FE    +G  PNS TY  +I GL 
Sbjct: 413 IRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLG 472

Query: 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLD 418
             G ++ A      M D     N   Y  LIR F   G  E G ++F++M    C P+L 
Sbjct: 473 KKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLT 532

Query: 419 TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
             N  +  +F   K+ D+     +  ++   GF+P   +++ +++GL   G 
Sbjct: 533 LLNTYMDCVF---KAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQ 581



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 142/278 (51%), Gaps = 4/278 (1%)

Query: 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH 167
           H +  A + R+  +++   H MK        + +  + + +  +GK D+A ++   M   
Sbjct: 574 HGLTKAGQARETSSIF---HAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVK 630

Query: 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKA 226
               ++ ++ +I+D L K  ++++AY LF+  + K  + +VI Y+ + +G+  V R ++A
Sbjct: 631 RVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEA 690

Query: 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
             +L+EM+ +GL PN+ T+N ++    +A +I EA   F  MK+ KC  +  TY+ +++G
Sbjct: 691 YLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILING 750

Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
              V +  +A   +  M   G++P+V TY  MI  L K  ++ +A  +FE     G  P+
Sbjct: 751 LCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERFKANGGTPD 810

Query: 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
           + ++N +I G+ H      A       +   C  NV+ 
Sbjct: 811 AASFNALIEGMSHANRAIEAYHVFEETRLKGCRINVKA 848



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 142/320 (44%), Gaps = 8/320 (2%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           +D   +  D      +   +K     P  ++++I+      AG+A     IF +M + G 
Sbjct: 538 MDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGF 597

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALE 228
                ++N ++D  CK  K++KAY + +  + K     V +Y  I +G   + R ++A  
Sbjct: 598 ALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYM 657

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           + +E   +G+  N+  Y+ ++ G+ + G+I+EA+    EM K+    +V T+ +++    
Sbjct: 658 LFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALV 717

Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
              EI  A   F  M      P+  TY+ +I  LC+      A + ++EM  +G +PN  
Sbjct: 718 KAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVV 777

Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE-- 406
           TY  +I GL   G +  A     R K +   P+  ++N LI     A        +FE  
Sbjct: 778 TYTTMIAGLAKVGNITDACSLFERFKANGGTPDAASFNALIEGMSHANRAIEAYHVFEET 837

Query: 407 -----KMGSGVCLPNLDTYN 421
                ++    C+  LD  N
Sbjct: 838 RLKGCRINVKACISLLDALN 857



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 183/411 (44%), Gaps = 19/411 (4%)

Query: 75  IIKRLWNHALKALHFF--NILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSL 132
           +++ L N +L A  F   +  S HP     P+   +A+ L     D   +  ++  M  L
Sbjct: 87  VLRTLRNPSLAAPFFLASSAASPHPL----PADAYNAV-LPFLSHDLAAMEKVLEEMSVL 141

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
             G      A +    V   + D A ++  +M     R + +++  ++  + + ++ E+A
Sbjct: 142 GYGVPNPACADLVSALVRTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEARQPERA 201

Query: 193 YNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
             L +  +   ++  V  +  +        R   AL ++ E+    L P++  YN+ +  
Sbjct: 202 LELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCIDC 261

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
           + +AG ++ AW+FF E+K +  + D V+YT+++      G +  A  +F  M     +P 
Sbjct: 262 FGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPC 321

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
              YN MI         ENA  + +++  +G +P+  ++N ++  L    +++ AL    
Sbjct: 322 AYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFE 381

Query: 372 RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431
            MK D  EPN  TYNI+I   C AG++E    + ++M      PNL T N     + V +
Sbjct: 382 AMKKD-AEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVN-----IMVDR 435

Query: 432 --KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
             K+     A ++      RG  P   T+  +++GL   G +G   +  RL
Sbjct: 436 LCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGL---GKKGNVDDAYRL 483



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 114/255 (44%), Gaps = 5/255 (1%)

Query: 81  NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKT 140
           + A + L    +    PT A    ++   ID  A++      + L    KS  +      
Sbjct: 618 DKAYEVLEEMKVKRVPPTVA----TYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIV 673

Query: 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR 200
           ++ + + +   G+ D A  I   M + G   ++ ++N+++D L K +++ +A   F+  +
Sbjct: 674 YSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMK 733

Query: 201 G-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
             K   +  +Y+++ NG C V++ NKA    +EM  +GL PN+ TY  ++ G  + G I 
Sbjct: 734 EMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNIT 793

Query: 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319
           +A   F   K      D  ++  ++ G         A +VF+     G   +V    +++
Sbjct: 794 DACSLFERFKANGGTPDAASFNALIEGMSHANRAIEAYHVFEETRLKGCRINVKACISLL 853

Query: 320 QVLCKKDSVENAILV 334
             L K + +E A +V
Sbjct: 854 DALNKAECLEQAAVV 868


>gi|356526063|ref|XP_003531639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like isoform 1 [Glycine max]
 gi|356526065|ref|XP_003531640.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like isoform 2 [Glycine max]
          Length = 522

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 182/389 (46%), Gaps = 5/389 (1%)

Query: 75  IIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSL 134
           + + L +H    L    + SY    + SP  FD      A    +R    +   MK    
Sbjct: 126 LTQTLSSHPPHTLFDALLFSYRLCNSSSPLVFDSLFKTLAHTNKFRHATHIYTLMKEHGF 185

Query: 135 GPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC-RQSLNSFNTILDLLCKEKKVEKAY 193
            PT ++        +   +AD A+  +  +    C   ++ + N I+   C   +V+K +
Sbjct: 186 SPTVQSCNAFLSSLLRLRRADIALAFYREIRRRSCVSPNVYTLNMIIRAYCMLGEVQKGF 245

Query: 194 NLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
           ++  K+       +V+S+N + +G+C       AL+V   MV+ G+ PN+ T+N ++ G+
Sbjct: 246 DMLEKMMDMGLSPNVVSFNTLISGYCNKGLFGLALKVKSLMVENGVQPNVVTFNTLINGF 305

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
            +  ++ EA R F EMK    +  VVTY T+++G+G VG+ +    V++ M+  G+   +
Sbjct: 306 CKERKLHEANRVFNEMKVANVDPSVVTYNTLLNGYGQVGDSEMGVRVYEEMMRNGLKADI 365

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            TYNA+I  LCK    + A     E+  +  +PN++T++ +I G C     ERA      
Sbjct: 366 LTYNALILGLCKDGKTKKAAGFVRELDKENLVPNASTFSALITGQCVRNNSERAFLIYRS 425

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           M    C PN QT+ +LI  FC   + +  +++   M   +  P+L T + L   +  R  
Sbjct: 426 MVRSGCSPNGQTFQMLISAFCKNEDFDGAVQVLRDMLGRLMSPDLSTMSELCDGL-CRCG 484

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
            + L +A  L  EM  R  +P  F   ++
Sbjct: 485 KNQLALA--LCSEMEVRRLLPDGFDKEKI 511



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 96/207 (46%), Gaps = 8/207 (3%)

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           + T+ H      + + A +++  M   G  P+V + NA +  L +    + A+  + E+ 
Sbjct: 161 FKTLAH----TNKFRHATHIYTLMKEHGFSPTVQSCNAFLSSLLRLRRADIALAFYREIR 216

Query: 340 GKGYM-PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
            +  + PN  T N++IR  C  GE+++  + + +M D    PNV ++N LI  +C+ G  
Sbjct: 217 RRSCVSPNVYTLNMIIRAYCMLGEVQKGFDMLEKMMDMGLSPNVVSFNTLISGYCNKGLF 276

Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
              L++   M      PN+ T+N LI+     +K   L  A ++  EM      P   T+
Sbjct: 277 GLALKVKSLMVENGVQPNVVTFNTLINGFCKERK---LHEANRVFNEMKVANVDPSVVTY 333

Query: 459 NRVLNGLLLIGNQGLAKEILRLQSRCG 485
           N +LNG   +G+  +   +     R G
Sbjct: 334 NTLLNGYGQVGDSEMGVRVYEEMMRNG 360



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 4/156 (2%)

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           S   ++++ + L   +   +A  ++  M   G+ P   + N  +  L      + AL F 
Sbjct: 153 SPLVFDSLFKTLAHTNKFRHATHIYTLMKEHGFSPTVQSCNAFLSSLLRLRRADIALAFY 212

Query: 371 GRMKDDEC-EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
             ++   C  PNV T N++IR +C  GE+++G ++ EKM      PN+ ++N LIS  + 
Sbjct: 213 REIRRRSCVSPNVYTLNMIIRAYCMLGEVQKGFDMLEKMMDMGLSPNVVSFNTLISG-YC 271

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            K    L +  K L  MV+ G  P   TFN ++NG 
Sbjct: 272 NKGLFGLALKVKSL--MVENGVQPNVVTFNTLINGF 305


>gi|302813417|ref|XP_002988394.1| hypothetical protein SELMODRAFT_128001 [Selaginella moellendorffii]
 gi|300143796|gb|EFJ10484.1| hypothetical protein SELMODRAFT_128001 [Selaginella moellendorffii]
          Length = 388

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 158/303 (52%), Gaps = 4/303 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGP--TQKTFAIIAERYVSAGKADRAVKIFL 162
           +++  ID+  +L  + +   L+ +M    + P    +T+  +   +       +A  I  
Sbjct: 48  TYNTLIDVFHKLERFDSARELLEQMWDSGIRPGVMAETYNNVIASFCEVCNVRKAKGILE 107

Query: 163 SMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKR 222
            M + GC+  + ++NT++  LCK ++ + A  L +    +   + I+YN + NG    ++
Sbjct: 108 LMIDSGCKPDVVTYNTLISGLCKVRRADDALQLMREM--EPAPNTITYNTVINGLWRSRK 165

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
             +A  +L EM+  G   +++TYN V+    R+ ++E+A   FL M+K+KCE D VT+ T
Sbjct: 166 DTEAQALLDEMISVGCPFSVSTYNCVIANLCRSREMEKAVDVFLYMRKKKCETDEVTFAT 225

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           +V GF     ++ A    D M   G+   V +Y  ++  LC + S + A  +F  MV +G
Sbjct: 226 LVDGFLRDKRLEDAGGTLDWMARAGIPSDVKSYTKLLNALCDRGSAQKACEIFNLMVDRG 285

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
           Y P   +YNV+++GLC    +E AL     M++ E +P+V +Y  +I+  C A  I+  +
Sbjct: 286 YAPTLVSYNVLLKGLCKALRVEHALVLFREMQEREIQPDVVSYTTVIKGLCAARRIDEAI 345

Query: 403 ELF 405
           +LF
Sbjct: 346 DLF 348



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 158/336 (47%), Gaps = 9/336 (2%)

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
           ++ P    F  +   +  AG  D A+     M + GC     ++NT++D+  K ++ + A
Sbjct: 6   AVAPNVVIFNSVVNGFARAGHLDGALGTLRMMRKAGCDPDEVTYNTLIDVFHKLERFDSA 65

Query: 193 YNLF-KVFRGKFKADVI--SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL 249
             L  +++    +  V+  +YN +   +C V    KA  +L+ M+D G  P++ TYN ++
Sbjct: 66  RELLEQMWDSGIRPGVMAETYNNVIASFCEVCNVRKAKGILELMIDSGCKPDVVTYNTLI 125

Query: 250 KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
            G  +  + ++A +   EM+      + +TY T+++G     +   A+ + D M++ G  
Sbjct: 126 SGLCKVRRADDALQLMREMEPAP---NTITYNTVINGLWRSRKDTEAQALLDEMISVGCP 182

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
            SV+TYN +I  LC+   +E A+ VF  M  K    +  T+  ++ G      +E A   
Sbjct: 183 FSVSTYNCVIANLCRSREMEKAVDVFLYMRKKKCETDEVTFATLVDGFLRDKRLEDAGGT 242

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
           +  M       +V++Y  L+   CD G  ++  E+F  M      P L +YN+L+  +  
Sbjct: 243 LDWMARAGIPSDVKSYTKLLNALCDRGSAQKACEIFNLMVDRGYAPTLVSYNVLLKGLCK 302

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
             + +  LV   L  EM +R   P   ++  V+ GL
Sbjct: 303 ALRVEHALV---LFREMQEREIQPDVVSYTTVIKGL 335



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 133/293 (45%), Gaps = 8/293 (2%)

Query: 198 VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
           +  G    +V+ +N + NG+      + AL  L+ M   G +P+  TYN ++  + +  +
Sbjct: 2   ILGGAVAPNVVIFNSVVNGFARAGHLDGALGTLRMMRKAGCDPDEVTYNTLIDVFHKLER 61

Query: 258 IEEAWRFFLEMKKRKCEIDVV--TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
            + A     +M        V+  TY  ++  F  V  +++A+ + + M++ G  P V TY
Sbjct: 62  FDSARELLEQMWDSGIRPGVMAETYNNVIASFCEVCNVRKAKGILELMIDSGCKPDVVTY 121

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           N +I  LCK    ++A+ +  EM      PN+ TYN VI GL  + +   A   +  M  
Sbjct: 122 NTLISGLCKVRRADDALQLMREMEPA---PNTITYNTVINGLWRSRKDTEAQALLDEMIS 178

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
             C  +V TYN +I   C + E+E+ +++F  M    C  +  T+  L+      K+ +D
Sbjct: 179 VGCPFSVSTYNCVIANLCRSREMEKAVDVFLYMRKKKCETDEVTFATLVDGFLRDKRLED 238

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
              AG  L  M   G      ++ ++LN L   G+   A EI  L    G  P
Sbjct: 239 ---AGGTLDWMARAGIPSDVKSYTKLLNALCDRGSAQKACEIFNLMVDRGYAP 288



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 113/269 (42%), Gaps = 38/269 (14%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  I+   R R       L+  M S+    +  T+  +      + + ++AV +FL M
Sbjct: 152 TYNTVINGLWRSRKDTEAQALLDEMISVGCPFSVSTYNCVIANLCRSREMEKAVDVFLYM 211

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRT 223
            +  C     +F T++D   ++K++E A      + R    +DV SY  + N  C     
Sbjct: 212 RKKKCETDEVTFATLVDGFLRDKRLEDAGGTLDWMARAGIPSDVKSYTKLLNALCDRGSA 271

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            KA E+   MVDRG  P L +YN++LKG  +A ++E A   F EM++R+           
Sbjct: 272 QKACEIFNLMVDRGYAPTLVSYNVLLKGLCKALRVEHALVLFREMQERE----------- 320

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
                                   + P V +Y  +I+ LC    ++ AI +F +      
Sbjct: 321 ------------------------IQPDVVSYTTVIKGLCAARRIDEAIDLFRDT--SFL 354

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            PN  T+  +  GL  +G +E      GR
Sbjct: 355 EPNDITHETLRIGLEKSGRLEDYSSVTGR 383



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 3/166 (1%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           S S+++  I    R R+      +   M+       + TFA + + ++   + + A    
Sbjct: 184 SVSTYNCVIANLCRSREMEKAVDVFLYMRKKKCETDEVTFATLVDGFLRDKRLEDAGGTL 243

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCL 219
             M   G    + S+  +L+ LC     +KA  +F   V RG +   ++SYNV+  G C 
Sbjct: 244 DWMARAGIPSDVKSYTKLLNALCDRGSAQKACEIFNLMVDRG-YAPTLVSYNVLLKGLCK 302

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
             R   AL + +EM +R + P++ +Y  V+KG   A +I+EA   F
Sbjct: 303 ALRVEHALVLFREMQEREIQPDVVSYTTVIKGLCAARRIDEAIDLF 348


>gi|302795973|ref|XP_002979749.1| hypothetical protein SELMODRAFT_111428 [Selaginella moellendorffii]
 gi|300152509|gb|EFJ19151.1| hypothetical protein SELMODRAFT_111428 [Selaginella moellendorffii]
          Length = 388

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 158/303 (52%), Gaps = 4/303 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGP--TQKTFAIIAERYVSAGKADRAVKIFL 162
           +++  ID+  +L  + +   L+ +M    + P    +T+  +   +       +A  I  
Sbjct: 48  TYNTLIDVFHKLERFDSARELLEQMWDSGIRPGVMAETYNNVIASFCEVCNVRKAKGILE 107

Query: 163 SMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKR 222
            M + GC+  + ++NT++  LCK ++ + A  L +    +   + I+YN + NG    ++
Sbjct: 108 LMIDSGCKPDVVTYNTLISGLCKLRRADDALQLMREM--EPAPNTITYNTVINGLWRSRK 165

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
             +A  +L EM+  G   +++TYN V+    R+ ++E+A   FL M+K+KCE D VT+ T
Sbjct: 166 DTEAQALLDEMISVGCPFSVSTYNCVIANLCRSREMEKAVDVFLYMRKKKCEADEVTFAT 225

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           +V GF     ++ A    D M   G+   V +Y  ++  LC + S + A  +F  MV +G
Sbjct: 226 LVDGFLRDKRLEDAGGTLDWMARAGIPSDVKSYTKLLNALCDRGSAQKACEIFNLMVDRG 285

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402
           Y P   +YNV+++GLC    +E AL     M++ E +P+V +Y  +I+  C A  I+  +
Sbjct: 286 YAPTLVSYNVLLKGLCKALRVEHALVLFREMQEREIQPDVVSYTTVIKGLCAARRIDEAI 345

Query: 403 ELF 405
           +LF
Sbjct: 346 DLF 348



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 158/336 (47%), Gaps = 9/336 (2%)

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
           ++ P    F  +   +  AG  D A+     M + GC     ++NT++D+  K ++ + A
Sbjct: 6   AVAPNVVIFNSVVNGFARAGHLDGALGTLRMMRKAGCNPDEVTYNTLIDVFHKLERFDSA 65

Query: 193 YNLF-KVFRGKFKADVI--SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL 249
             L  +++    +  V+  +YN +   +C V    KA  +L+ M+D G  P++ TYN ++
Sbjct: 66  RELLEQMWDSGIRPGVMAETYNNVIASFCEVCNVRKAKGILELMIDSGCKPDVVTYNTLI 125

Query: 250 KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
            G  +  + ++A +   EM+      + +TY T+++G     +   A+ + D M++ G  
Sbjct: 126 SGLCKLRRADDALQLMREMEPAP---NTITYNTVINGLWRSRKDTEAQALLDEMISVGCP 182

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
            SV+TYN +I  LC+   +E A+ VF  M  K    +  T+  ++ G      +E A   
Sbjct: 183 FSVSTYNCVIANLCRSREMEKAVDVFLYMRKKKCEADEVTFATLVDGFLRDKRLEDAGGT 242

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
           +  M       +V++Y  L+   CD G  ++  E+F  M      P L +YN+L+  +  
Sbjct: 243 LDWMARAGIPSDVKSYTKLLNALCDRGSAQKACEIFNLMVDRGYAPTLVSYNVLLKGLCK 302

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
             + +  LV   L  EM +R   P   ++  V+ GL
Sbjct: 303 ALRVEHALV---LFREMQEREIQPDVVSYTTVIKGL 335



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 133/293 (45%), Gaps = 8/293 (2%)

Query: 198 VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
           +  G    +V+ +N + NG+      + AL  L+ M   G NP+  TYN ++  + +  +
Sbjct: 2   ILGGAVAPNVVIFNSVVNGFARAGHLDGALGTLRMMRKAGCNPDEVTYNTLIDVFHKLER 61

Query: 258 IEEAWRFFLEMKKRKCEIDVV--TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315
            + A     +M        V+  TY  ++  F  V  +++A+ + + M++ G  P V TY
Sbjct: 62  FDSARELLEQMWDSGIRPGVMAETYNNVIASFCEVCNVRKAKGILELMIDSGCKPDVVTY 121

Query: 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375
           N +I  LCK    ++A+ +  EM      PN+ TYN VI GL  + +   A   +  M  
Sbjct: 122 NTLISGLCKLRRADDALQLMREMEPA---PNTITYNTVINGLWRSRKDTEAQALLDEMIS 178

Query: 376 DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
             C  +V TYN +I   C + E+E+ +++F  M    C  +  T+  L+      K+ +D
Sbjct: 179 VGCPFSVSTYNCVIANLCRSREMEKAVDVFLYMRKKKCEADEVTFATLVDGFLRDKRLED 238

Query: 436 LLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
              AG  L  M   G      ++ ++LN L   G+   A EI  L    G  P
Sbjct: 239 ---AGGTLDWMARAGIPSDVKSYTKLLNALCDRGSAQKACEIFNLMVDRGYAP 288



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 113/269 (42%), Gaps = 38/269 (14%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           +++  I+   R R       L+  M S+    +  T+  +      + + ++AV +FL M
Sbjct: 152 TYNTVINGLWRSRKDTEAQALLDEMISVGCPFSVSTYNCVIANLCRSREMEKAVDVFLYM 211

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRT 223
            +  C     +F T++D   ++K++E A      + R    +DV SY  + N  C     
Sbjct: 212 RKKKCEADEVTFATLVDGFLRDKRLEDAGGTLDWMARAGIPSDVKSYTKLLNALCDRGSA 271

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
            KA E+   MVDRG  P L +YN++LKG  +A ++E A   F EM++R+           
Sbjct: 272 QKACEIFNLMVDRGYAPTLVSYNVLLKGLCKALRVEHALVLFREMQERE----------- 320

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
                                   + P V +Y  +I+ LC    ++ AI +F +      
Sbjct: 321 ------------------------IQPDVVSYTTVIKGLCAARRIDEAIDLFRD--PSFL 354

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            PN  T+  +  GL  +G +E      GR
Sbjct: 355 EPNDITHETLRIGLEKSGRLEDYSSVTGR 383



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 3/166 (1%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           S S+++  I    R R+      +   M+       + TFA + + ++   + + A    
Sbjct: 184 SVSTYNCVIANLCRSREMEKAVDVFLYMRKKKCEADEVTFATLVDGFLRDKRLEDAGGTL 243

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCL 219
             M   G    + S+  +L+ LC     +KA  +F   V RG +   ++SYNV+  G C 
Sbjct: 244 DWMARAGIPSDVKSYTKLLNALCDRGSAQKACEIFNLMVDRG-YAPTLVSYNVLLKGLCK 302

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
             R   AL + +EM +R + P++ +Y  V+KG   A +I+EA   F
Sbjct: 303 ALRVEHALVLFREMQEREIQPDVVSYTTVIKGLCAARRIDEAIDLF 348


>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
 gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
          Length = 1035

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 115/433 (26%), Positives = 191/433 (44%), Gaps = 54/433 (12%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYR-------TVWTLVHRMKS---LSLG 135
           AL  F+ L  H   A S  +F+H +   +R    R       TV +L +RM     + + 
Sbjct: 33  ALKLFDELLPHARPA-SVVAFNHLLAAVSRSSGRRSTTSESETVVSLFNRMVRDCYIKVA 91

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P + T++I+   +   G  +     F  + + G R      N +L+ LC  K+V +A ++
Sbjct: 92  PNRCTYSILIGCFCRMGHLEHGFAAFGLILKTGWRMDHIVINQLLNGLCDGKRVGEAMDV 151

Query: 196 F--KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL---NPNLTTYNIVLK 250
              ++       D +SYN++  G C  KR  +ALE+L  M D  +    PN+ +Y+ V+ 
Sbjct: 152 LLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVIN 211

Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
           G+F  GQ+++ +  FLEM  R    DVVTYTT++ G        RA  VF  M++ GV P
Sbjct: 212 GFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKP 271

Query: 311 SVATYNAMIQ-----------------------------------VLCKKDSVENAILVF 335
           ++ TYN +I                                     LCK      A   F
Sbjct: 272 NIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFF 331

Query: 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
           + M+GKG  P+ TTY +++ G    G +    + +  M  +   PN   +NI    +   
Sbjct: 332 DSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKC 391

Query: 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
           G I++ +++F KM      P+  +Y  LI ++    + DD  V      +M++ G  P  
Sbjct: 392 GIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVK---FNQMINEGVTPDI 448

Query: 456 FTFNRVLNGLLLI 468
             F+ ++ GL  +
Sbjct: 449 VVFSSLVYGLCTV 461



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 105/368 (28%), Positives = 172/368 (46%), Gaps = 5/368 (1%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII 144
           KA+  FN +      +    S+   ID   +L          ++M +  + P    F+ +
Sbjct: 396 KAMDIFNKMR-QQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSL 454

Query: 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KF 203
                +  K ++  ++F  M   G   ++  FNTIL  LCKE +V +   L         
Sbjct: 455 VYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGV 514

Query: 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWR 263
           + DVISYN + +G CL    ++A ++L+ MV  GL P+  +YN +L GY +AG+I+ A+ 
Sbjct: 515 RPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYS 574

Query: 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323
            F +M        VVTY TI+HG         A+ ++  M+N G    + TYN ++  LC
Sbjct: 575 HFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNGLC 634

Query: 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
           K + V+ AI +F+ +  KG   N  T+N++I  L   G  E A++    +  +    NV 
Sbjct: 635 KSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQNVV 694

Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLL 443
           TY +++    + G +E    LF  M      PN    N L+  +  R    D+  AG  L
Sbjct: 695 TYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHR---GDISRAGAYL 751

Query: 444 IEMVDRGF 451
            ++ +R F
Sbjct: 752 SKLDERNF 759



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 167/347 (48%), Gaps = 4/347 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L++ M +  + P    F I    Y   G  D+A+ IF  M + G      S+  ++D LC
Sbjct: 365 LLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALC 424

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  +V+ A   F ++       D++ ++ +  G C V +  K  E+  EM++ G++PN+ 
Sbjct: 425 KLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIV 484

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            +N +L    + G++ E  R    ++      DV++Y T++ G  + G I  A  + +GM
Sbjct: 485 FFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGM 544

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           V+ G+ P   +YN ++   CK   +++A   F +M+  G  P   TYN ++ GL  T   
Sbjct: 545 VSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRF 604

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
             A E    M +   + ++ TYNI++   C +  ++  +++F+ + S     N+ T+NI+
Sbjct: 605 SEAKELYLNMINSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIM 664

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
           I ++    + +D   A  L   +   G +    T+  V+  L+  G+
Sbjct: 665 IGALLKGGRKED---AMDLFAAIPANGLVQNVVTYRLVVENLIEEGS 708



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 171/374 (45%), Gaps = 4/374 (1%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
           ++   ID   + + +     +  +M    + P   T+  +   Y+S GK    V++   M
Sbjct: 240 TYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEM 299

Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
              G + +  ++ ++L+ LCK  +  +A   F    GK  K  V +Y ++ +G+      
Sbjct: 300 SAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGAL 359

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283
           ++  ++L  MV  G++PN   +NI    Y + G I++A   F +M+++    D V+Y  +
Sbjct: 360 SEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGAL 419

Query: 284 VHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
           +     +G +  A   F+ M+N GV P +  +++++  LC  D  E    +F EM+  G 
Sbjct: 420 IDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGI 479

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
            PN   +N ++  LC  G +      V  ++     P+V +YN LI   C AG I+   +
Sbjct: 480 HPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASK 539

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           L E M S    P+  +YN L+       + D    A     +M+  G  P   T+N +L+
Sbjct: 540 LLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDS---AYSHFRKMLSNGITPGVVTYNTILH 596

Query: 464 GLLLIGNQGLAKEI 477
           GL        AKE+
Sbjct: 597 GLFQTKRFSEAKEL 610



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 182/414 (43%), Gaps = 44/414 (10%)

Query: 92  ILSYHPTYAHSPSSFDHAIDLAARLRDYRT--VWTLVHRM---KSLSLGPTQKTFAIIAE 146
           +L   P     P +  + I L     + R      L+H M   +  S  P   +++ +  
Sbjct: 152 LLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVIN 211

Query: 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKA 205
            + + G+ D+   +FL M + G    + ++ T++D LCK +  ++A  +F+ +     K 
Sbjct: 212 GFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKP 271

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           ++ +YN + +G+  + +  + + +L+EM   G  PN  TY  +L    + G+  EA  FF
Sbjct: 272 NIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFF 331

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGE--------------------------------- 292
             M  +  +  V TY  ++HG+   G                                  
Sbjct: 332 DSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKC 391

Query: 293 --IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
             I +A ++F+ M   G+ P   +Y A+I  LCK   V++A + F +M+ +G  P+   +
Sbjct: 392 GIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVF 451

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           + ++ GLC   + E+  E    M +    PN+  +N ++   C  G +  G  L + +  
Sbjct: 452 SSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIEC 511

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
               P++ +YN LI    +    D+   A KLL  MV  G  P  F++N +L+G
Sbjct: 512 MGVRPDVISYNTLIDGHCLAGTIDE---ASKLLEGMVSVGLKPDSFSYNTLLHG 562



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 171/356 (48%), Gaps = 15/356 (4%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           LV  ++ + + P   ++  + + +  AG  D A K+   M   G +    S+NT+L   C
Sbjct: 505 LVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYC 564

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K  +++ AY+ F K+        V++YN I +G    KR ++A E+   M++ G   ++ 
Sbjct: 565 KAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIY 624

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TYNI+L G  ++  ++EA + F  +  +  +++++T+  ++      G  + A ++F  +
Sbjct: 625 TYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAI 684

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G++ +V TY  +++ L ++ S+E    +F  M   G  PNS   N ++R L H G++
Sbjct: 685 PANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDI 744

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
            RA  ++ ++ +        T ++LI  F             E       LP    Y IL
Sbjct: 745 SRAGAYLSKLDERNFSVEASTTSMLISIFSSD----------EYQHHAKSLPK--KYRIL 792

Query: 424 --ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
              +S  + KK+  +  A  L  EM+ +G  P   T+N +L+GL   G    AKE+
Sbjct: 793 NEANSSALIKKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKEL 848



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 151/344 (43%), Gaps = 4/344 (1%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P+  T+ I+   Y + G       +   M  +G   + + FN       K   ++KA ++
Sbjct: 341 PSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDI 400

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
           F   R +    D +SY  + +  C + R + A     +M++ G+ P++  ++ ++ G   
Sbjct: 401 FNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCT 460

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
             + E+    F EM       ++V + TI+      G +   + + D +   GV P V +
Sbjct: 461 VDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVIS 520

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           YN +I   C   +++ A  + E MV  G  P+S +YN ++ G C  G ++ A     +M 
Sbjct: 521 YNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKML 580

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
            +   P V TYN ++             EL+  M +     ++ TYNI+++ +    KS+
Sbjct: 581 SNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNGLC---KSN 637

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478
            +  A K+   +  +G      TFN ++  LL  G +  A ++ 
Sbjct: 638 CVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLF 681



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/341 (21%), Positives = 148/341 (43%), Gaps = 32/341 (9%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           TF I+    +  G+ + A+ +F ++  +G  Q++ ++  +++ L +E  +E+  +LF   
Sbjct: 660 TFNIMIGALLKGGRKEDAMDLFAAIPANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAM 719

Query: 200 RGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF----- 253
                A +    N +          ++A   L ++ +R  +   +T ++++  +      
Sbjct: 720 EKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSMLISIFSSDEYQ 779

Query: 254 -----------------------RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
                                  +A +I++A+  F EM  +    DVVTY TI+HG    
Sbjct: 780 HHAKSLPKKYRILNEANSSALIKKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQT 839

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           G    A+ ++  M+N     ++ TYN ++  LCK + V+ A  +F+ +  KG   N  T+
Sbjct: 840 GRFSEAKELYLSMINSRTQMNIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITF 899

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           N++I  L   G  E A++    +  +   P+V TY ++     + G +E    LF  M  
Sbjct: 900 NIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEK 959

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
                +    N L+  +  R    D+  AG  L ++ ++ F
Sbjct: 960 SGTPLDSRLLNALVRRLLQR---GDISRAGAYLSKLDEKNF 997



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 109/212 (51%), Gaps = 1/212 (0%)

Query: 182  LLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
            L+ K ++++ AY+LF+    K    DV++YN I +G     R ++A E+   M++     
Sbjct: 800  LIKKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQM 859

Query: 241  NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
            N+ TYNI+L G  ++  ++EA++ F  +  +  +++++T+  ++      G  + A ++F
Sbjct: 860  NIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLF 919

Query: 301  DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
              +   G++P V TY  + + L ++ S+E    +F  M   G   +S   N ++R L   
Sbjct: 920  AAIPANGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVRRLLQR 979

Query: 361  GEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
            G++ RA  ++ ++ +        T + LI  F
Sbjct: 980  GDISRAGAYLSKLDEKNFSLEASTTSELISLF 1011



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 127/270 (47%), Gaps = 22/270 (8%)

Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG-------QIEEAWRFFLEMKKRKCEIDVV 278
           AL++  E++      ++  +N +L    R+        + E     F  M  R C I V 
Sbjct: 33  ALKLFDELLPHARPASVVAFNHLLAAVSRSSGRRSTTSESETVVSLFNRMV-RDCYIKVA 91

Query: 279 ----TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI-L 333
               TY+ ++  F  +G ++     F  ++  G        N ++  LC    V  A+ +
Sbjct: 92  PNRCTYSILIGCFCRMGHLEHGFAAFGLILKTGWRMDHIVINQLLNGLCDGKRVGEAMDV 151

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE---CEPNVQTYNILIR 390
           + + M   G MP++ +YN++++GLC+    E ALE +  M DD+   C PNV +Y+ +I 
Sbjct: 152 LLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVIN 211

Query: 391 YFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450
            F   G++++   LF +M      P++ TY  +I  +   +  D    A  +  +M+D G
Sbjct: 212 GFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDR---AEAVFQQMIDNG 268

Query: 451 FMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
             P   T+N +++G L IG     KE++R+
Sbjct: 269 VKPNIDTYNCLIHGYLSIGKW---KEVVRM 295



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 1/186 (0%)

Query: 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ 171
           L  + R     ++L   M    L P   T+  I       G+   A +++LSM     + 
Sbjct: 800 LIKKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQM 859

Query: 172 SLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVL 230
           ++ ++N IL+ LCK   V++A+ +F+    K  + ++I++N++        R   A+++ 
Sbjct: 860 NIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLF 919

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
             +   GL P++ TY +V +     G +EE    FL M+K    +D      +V      
Sbjct: 920 AAIPANGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVRRLLQR 979

Query: 291 GEIKRA 296
           G+I RA
Sbjct: 980 GDISRA 985


>gi|218200036|gb|EEC82463.1| hypothetical protein OsI_26904 [Oryza sativa Indica Group]
          Length = 346

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 132/226 (58%), Gaps = 4/226 (1%)

Query: 152 GKADRAVKIF--LSMHEH-GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADV 207
           G  DRA  +   +S+  H  CR +  S+  ++  LC +++ ++A  L +  R    +ADV
Sbjct: 91  GHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRRADQAVGLLRSMRSAGVRADV 150

Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
           ++Y  +  G C     +KA+E++ EM + G+ PN+  Y+ +L+GY ++G+ E+  + F+E
Sbjct: 151 VTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVE 210

Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
           M ++  E DVV YT ++     VG+ K+A  V D MV  G+ P+V TYN +I  +CK+ S
Sbjct: 211 MSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGS 270

Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
           V+ AI V ++M  KG  P+  TYN +I+GL    EM+ A+  +  M
Sbjct: 271 VKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEM 316



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 123/241 (51%), Gaps = 4/241 (1%)

Query: 175 SFNTILDLLCKEKKVEKAYNLFKVF----RGKFKADVISYNVIANGWCLVKRTNKALEVL 230
           S+NT+L  LC+    ++A  L +          + + +SY V+    C  +R ++A+ +L
Sbjct: 79  SYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRRADQAVGLL 138

Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
           + M   G+  ++ TY  +++G   A ++++A     EM +   E +VV Y++++ G+   
Sbjct: 139 RSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKS 198

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           G  +    VF  M   G+ P V  Y  +I  LCK    + A  V + MV +G  PN  TY
Sbjct: 199 GRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTY 258

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           NV+I  +C  G ++ A+  + +M +    P+V TYN LI+   D  E++  + L E+M  
Sbjct: 259 NVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVR 318

Query: 411 G 411
           G
Sbjct: 319 G 319



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 119/250 (47%), Gaps = 7/250 (2%)

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDR---GLNPNLTTYNIVLKGYFRAGQIEEAW 262
           D +SYN +    C     ++A  +L+ M         PN  +Y ++++      + ++A 
Sbjct: 76  DAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRRADQAV 135

Query: 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322
                M+      DVVTY T++ G     E+ +A  +   M   G+ P+V  Y++++Q  
Sbjct: 136 GLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGY 195

Query: 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
           CK    E+   VF EM  KG  P+   Y  +I  LC  G+ ++A   +  M     EPNV
Sbjct: 196 CKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNV 255

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442
            TYN+LI   C  G ++  + + +KM      P++ TYN LI  +    + D+ +    L
Sbjct: 256 VTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAM---WL 312

Query: 443 LIEMVDRGFM 452
           L EMV RG++
Sbjct: 313 LEEMV-RGYI 321



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 109/234 (46%), Gaps = 3/234 (1%)

Query: 81  NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRT--VWTLVHRMKSLSLGPTQ 138
            H  +A      +S  P  A  P++  + + + A   D R      L+  M+S  +    
Sbjct: 91  GHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRRADQAVGLLRSMRSAGVRADV 150

Query: 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV 198
            T+  +      A + D+AV++   M E G   ++  ++++L   CK  + E    +F  
Sbjct: 151 VTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVE 210

Query: 199 FRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257
              K  + DV+ Y  + +  C V +  KA  V+  MV RGL PN+ TYN+++    + G 
Sbjct: 211 MSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGS 270

Query: 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
           ++EA     +M ++    DVVTY T++ G   V E+  A  + + MV G ++ S
Sbjct: 271 VKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGYIIQS 324



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 101/216 (46%), Gaps = 6/216 (2%)

Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMV---NGGVLPSVATYNAMIQVLCKKDSVENAI 332
           D V+Y T++      G   RA  +   M    +    P+  +Y  +++ LC     + A+
Sbjct: 76  DAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRRADQAV 135

Query: 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392
            +   M   G   +  TY  +IRGLC   E+++A+E +G M +   EPNV  Y+ L++ +
Sbjct: 136 GLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGY 195

Query: 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452
           C +G  E   ++F +M      P++  Y  LI S+    K+     A  ++  MV RG  
Sbjct: 196 CKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKK---AHGVMDMMVRRGLE 252

Query: 453 PRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           P   T+N ++N +   G+   A  +L+  S  G  P
Sbjct: 253 PNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAP 288



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 91/186 (48%), Gaps = 9/186 (4%)

Query: 309 LPSV---ATYNAMIQVLCKKDSVENAILVFEEMVGKGY---MPNSTTYNVVIRGLCHTGE 362
           LPSV    +YN ++  LC++   + A  +   M  + +    PN+ +Y V++R LC    
Sbjct: 71  LPSVRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRR 130

Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
            ++A+  +  M+      +V TY  LIR  CDA E+++ +EL  +M      PN+  Y+ 
Sbjct: 131 ADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSS 190

Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           L+       + +D+   GK+ +EM ++G  P    +  +++ L  +G    A  ++ +  
Sbjct: 191 LLQGYCKSGRWEDV---GKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMV 247

Query: 483 RCGRLP 488
           R G  P
Sbjct: 248 RRGLEP 253


>gi|422293946|gb|EKU21246.1| hypothetical protein NGA_2092600 [Nannochloropsis gaditana CCMP526]
          Length = 659

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/397 (26%), Positives = 180/397 (45%), Gaps = 12/397 (3%)

Query: 77  KRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGP 136
           +R W  AL  L         P        F  AI    + R +R    ++  M++  L P
Sbjct: 207 RRDWTRALTVLDA-------PLIEVDVVGFTMAIKACGQARRWREALGVLREMQARGLRP 259

Query: 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF 196
              +F    +    AG+ D A+++F  + +HG   +L S+NT +    +   V++A+ L 
Sbjct: 260 DLVSFNTAMDALGKAGQYDLALELFTEIEDHGFAPNLVSYNTAIHACGRAGMVDRAHELL 319

Query: 197 KVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR-GLNPNLTTYNIVLKGYFR 254
           +  +G   + D +SYN +   +    +   ALE+L EM +  G++P+L +YN  +    +
Sbjct: 320 REMQGLSVRPDSVSYNTVMAAFAKKNQWKAALELLAEMKEAPGVDPDLISYNTAMHVCAK 379

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
           AG+ E A     E   +  + DVV+Y T++H  G  GE  +A ++F  M   GV P   +
Sbjct: 380 AGRWERATELLTEALGQGLQPDVVSYNTVMHACGRAGEYLQALDLFGMMEEVGVAPDRVS 439

Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
           +N  +    +    + A+ +  EM  +   PN  +Y + +      GE ERALE +  M+
Sbjct: 440 FNTAMHACNRALKWQAALQILREMEARSIAPNVKSYTIAVDACGRAGEWERALELMEEME 499

Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
                 NV TY   +   C  G ++R L L E+M      PN+ +Y I + +M    K D
Sbjct: 500 VRGVPANVHTYTAAMDACCRGGAVDRVLVLLEEMDGKGVEPNVVSYTIAMDAMNRVGKWD 559

Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471
               A  +L +MV RG      ++   L+     G++
Sbjct: 560 R---ASAVLEQMVQRGLRLDSVSYRTALSTAGRAGDE 593



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 119/277 (42%), Gaps = 15/277 (5%)

Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSL-SLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           S++  +   A+   ++    L+  MK    + P   ++         AG+ +RA ++   
Sbjct: 333 SYNTVMAAFAKKNQWKAALELLAEMKEAPGVDPDLISYNTAMHVCAKAGRWERATELLTE 392

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKR 222
               G +  + S+NT++    +  +  +A +LF +      A D +S+N   +      +
Sbjct: 393 ALGQGLQPDVVSYNTVMHACGRAGEYLQALDLFGMMEEVGVAPDRVSFNTAMHACNRALK 452

Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
              AL++L+EM  R + PN+ +Y I +    RAG+ E A     EM+ R    +V TYT 
Sbjct: 453 WQAALQILREMEARSIAPNVKSYTIAVDACGRAGEWERALELMEEMEVRGVPANVHTYTA 512

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
            +      G + R   + + M   GV P+V +Y   +  + +    + A  V E+MV +G
Sbjct: 513 AMDACCRGGAVDRVLVLLEEMDGKGVEPNVVSYTIAMDAMNRVGKWDRASAVLEQMVQRG 572

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
              +S +Y               AL   GR  D+E E
Sbjct: 573 LRLDSVSYRT-------------ALSTAGRAGDEEGE 596


>gi|242041823|ref|XP_002468306.1| hypothetical protein SORBIDRAFT_01g043390 [Sorghum bicolor]
 gi|241922160|gb|EER95304.1| hypothetical protein SORBIDRAFT_01g043390 [Sorghum bicolor]
          Length = 519

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 119/471 (25%), Positives = 217/471 (46%), Gaps = 28/471 (5%)

Query: 31  APLPPAAADPAALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRL-WNHA--LKAL 87
            P   A AD   +  ++ ++  P  +   L   ++  +  L+D +++R  + H   L+AL
Sbjct: 35  GPASDADADAGEVYRIVTSAATPSAMESALAASAVPLSSPLLDAVMRRFRFAHGDPLRAL 94

Query: 88  HFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGP-TQKTFAIIAE 146
              ++ +     A SP + D A+ +  R R +  +W L+   + +     T +T  I+  
Sbjct: 95  SLLSLAADRGGVAPSPYAIDTALYVLGRARRFPHMWDLLATTRRICPDAVTSRTAMIVLG 154

Query: 147 RYVSAGKADRAVKIF--LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFK 204
           R          V  F  L+   H    +   FN +L  LC+EK +  A N+F   +  F+
Sbjct: 155 RVAKVCSVHETVASFRRLARMFHAVDPAC-LFNALLRTLCQEKSMSDARNVFHALKYDFR 213

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
            +  ++N++ +GW   K    A   + EM + G+ P+L TYN ++  + +   +E+A++ 
Sbjct: 214 VNRHTFNILLSGW---KSAEDAEAFVAEMRELGVEPDLVTYNSLIDCHCKNRDVEKAYKL 270

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
             EM+++    D++TYT+++ G G++G+  +AR++   M   G  P V  YNA I+    
Sbjct: 271 LDEMREKDISPDIITYTSLIGGLGLIGQPDKARDLLKEMHELGCSPDVPAYNAAIRNFVI 330

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
              + +A  + ++M  KG MPN TTYN+  R      ++        RM+ + C PN Q+
Sbjct: 331 AKRLGDAFALMDQMASKGLMPNPTTYNLFFRCYYWAFDIGSTWRLYERMRSEGCFPNTQS 390

Query: 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL-- 442
              +IR     G++ + LEL+  M S        ++ ++   +F     D L   GKL  
Sbjct: 391 CMFIIRLCHRYGKVGQALELWSDMVSN----RFGSFTLVSDVLF-----DLLCDEGKLEE 441

Query: 443 ----LIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPR 489
                 +MV+ G  P    F R+   L+ +  Q   + I RL  +  +  R
Sbjct: 442 VERCFCQMVEFGQKPSNVAFRRI-KILMQVAKQ--EESIARLTEKMAQFGR 489


>gi|356557957|ref|XP_003547276.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g43820-like [Glycine max]
          Length = 505

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 168/327 (51%), Gaps = 5/327 (1%)

Query: 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR 200
            +++ + +V AG   RA+++F ++ + G R+   + N +L  LC+   V  A ++    +
Sbjct: 148 LSVVVDSFVRAGHVSRAIQVFGNLDDLGVRRDTEALNVLLLCLCRRSHVGAANSVLNSMK 207

Query: 201 GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
           GK   DV +YN +A GW    R ++   V++EM   GL P+  T+  +++G  R G+++E
Sbjct: 208 GKVDFDVGTYNAVAGGWSRFGRVSEVERVMREMEADGLRPDCRTFGFLIEGLGREGRMDE 267

Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
           A      MK+  C+ D  TY  ++  F  VG+ +     ++ M++    P++ TY  MI 
Sbjct: 268 AVEILCGMKEMNCQPDTETYNAVIFNFVSVGDFEECIKYYNRMLSDNCEPNLDTYARMIN 327

Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
              +   V +A+L+F+EM+ +G +P++ T    I+ LC  G    AL    + +   C  
Sbjct: 328 RFLRARKVADALLMFDEMLRRGVVPSTGTITTFIKRLCSYGPPYAALMIYKKARKLGCVI 387

Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF-VRKKSDDLLVA 439
           +++ Y IL+      G+    L ++E+M       +L+ Y  +IS +  V +  + +LV 
Sbjct: 388 SMEAYKILLMRLSMVGKCGTLLSIWEEMQECGYSSDLEVYECIISGLCNVGQLENAVLV- 446

Query: 440 GKLLIEMVDRGFMPRKFTFNRVLNGLL 466
              + E + +GF P +  ++++ N LL
Sbjct: 447 ---MEEALRKGFCPSRLVYSKLSNRLL 470



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 117/265 (44%), Gaps = 1/265 (0%)

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
           V  ++  M++  L P  +TF  + E     G+ D AV+I   M E  C+    ++N ++ 
Sbjct: 233 VERVMREMEADGLRPDCRTFGFLIEGLGREGRMDEAVEILCGMKEMNCQPDTETYNAVIF 292

Query: 182 LLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
                   E+    + ++     + ++ +Y  + N +   ++   AL +  EM+ RG+ P
Sbjct: 293 NFVSVGDFEECIKYYNRMLSDNCEPNLDTYARMINRFLRARKVADALLMFDEMLRRGVVP 352

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           +  T    +K     G    A   + + +K  C I +  Y  ++    +VG+     +++
Sbjct: 353 STGTITTFIKRLCSYGPPYAALMIYKKARKLGCVISMEAYKILLMRLSMVGKCGTLLSIW 412

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           + M   G    +  Y  +I  LC    +ENA+LV EE + KG+ P+   Y+ +   L  +
Sbjct: 413 EEMQECGYSSDLEVYECIISGLCNVGQLENAVLVMEEALRKGFCPSRLVYSKLSNRLLAS 472

Query: 361 GEMERALEFVGRMKDDECEPNVQTY 385
            + ERA +   ++K      N + Y
Sbjct: 473 DKSERAYKLFLKIKXARSLENAKKY 497



 Score = 46.6 bits (109), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 5/147 (3%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177
           D+       +RM S +  P   T+A +  R++ A K   A+ +F  M   G   S  +  
Sbjct: 299 DFEECIKYYNRMLSDNCEPNLDTYARMINRFLRARKVADALLMFDEMLRRGVVPSTGTIT 358

Query: 178 TILDLLCKEKKVEKAYNLFKVFRGKFKADVIS---YNVIANGWCLVKRTNKALEVLKEMV 234
           T +  LC       A  ++K  + +    VIS   Y ++     +V +    L + +EM 
Sbjct: 359 TFIKRLCSYGPPYAALMIYK--KARKLGCVISMEAYKILLMRLSMVGKCGTLLSIWEEMQ 416

Query: 235 DRGLNPNLTTYNIVLKGYFRAGQIEEA 261
           + G + +L  Y  ++ G    GQ+E A
Sbjct: 417 ECGYSSDLEVYECIISGLCNVGQLENA 443


>gi|15218855|ref|NP_171855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180297|sp|Q9LR67.1|PPR9_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g03560, mitochondrial; Flags: Precursor
 gi|9280662|gb|AAF86531.1|AC002560_24 F21B7.18 [Arabidopsis thaliana]
 gi|332189465|gb|AEE27586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/430 (24%), Positives = 191/430 (44%), Gaps = 40/430 (9%)

Query: 86  ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
           A  FF        Y H+   +   +D+ A  +D   +  +   +K      T      + 
Sbjct: 135 AWSFFCWSRKQKKYTHNLECYVSLVDVLALAKDVDRIRFVSSEIKKFEFPMTVSAANALI 194

Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR-GKFK 204
           + +   G  +  + ++  M E+G   +L ++N +++ L     V+ A  +F+V   G+ K
Sbjct: 195 KSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIK 254

Query: 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264
            D+++YN +  G+C   +T KA+E L++M  RG   +  TY  +++  +           
Sbjct: 255 PDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVAL 314

Query: 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
           + EM ++  ++    ++ ++ G    G++     VF+ M+  G  P+VA Y  +I    K
Sbjct: 315 YQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAK 374

Query: 325 KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF--------------- 369
             SVE+AI +   M+ +G+ P+  TY+VV+ GLC  G +E AL++               
Sbjct: 375 SGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMF 434

Query: 370 ----------VGRMKDDE----------CEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409
                      GR+ + E          C  +   YN LI  F    +++  + LF++M 
Sbjct: 435 YSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRME 494

Query: 410 SGV-CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLI 468
               C   + TY IL+S MF   ++++ L   KL   M+D+G  P    F  +  GL L 
Sbjct: 495 EEEGCDQTVYTYTILLSGMFKEHRNEEAL---KLWDMMIDKGITPTAACFRALSTGLCLS 551

Query: 469 GNQGLAKEIL 478
           G    A +IL
Sbjct: 552 GKVARACKIL 561



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 121/268 (45%), Gaps = 13/268 (4%)

Query: 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC 169
           ID  A+         L+HRM      P   T++++       G+ + A+  F     H C
Sbjct: 369 IDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYF-----HTC 423

Query: 170 R---QSLNS--FNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT 223
           R    ++NS  +++++D L K  +V++A  LF+    K    D   YN + + +   ++ 
Sbjct: 424 RFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKV 483

Query: 224 NKALEVLKEMVDR-GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
           ++A+ + K M +  G +  + TY I+L G F+  + EEA + +  M  +        +  
Sbjct: 484 DEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRA 543

Query: 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342
           +  G  + G++ RA  + D +   GV+   A  + MI  LCK   ++ A  + + +  +G
Sbjct: 544 LSTGLCLSGKVARACKILDELAPMGVILDAACED-MINTLCKAGRIKEACKLADGITERG 602

Query: 343 YMPNSTTYNVVIRGLCHTGEMERALEFV 370
                    V+I  L   G+ + A++ +
Sbjct: 603 REVPGRIRTVMINALRKVGKADLAMKLM 630



 Score = 38.9 bits (89), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 60/144 (41%), Gaps = 13/144 (9%)

Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400
           K Y  N   Y  ++  L    +++R       +K  E    V   N LI+ F   G +E 
Sbjct: 146 KKYTHNLECYVSLVDVLALAKDVDRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEE 205

Query: 401 GLELFEKMGSGVCLPNLDTYNI----LISSMFVRKKSDDLLVAGKLLIEMVDRG-FMPRK 455
            L ++ KM      P L TYN     L+S+MFV         + + + E+++ G   P  
Sbjct: 206 LLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVD--------SAERVFEVMESGRIKPDI 257

Query: 456 FTFNRVLNGLLLIGNQGLAKEILR 479
            T+N ++ G    G    A E LR
Sbjct: 258 VTYNTMIKGYCKAGQTQKAMEKLR 281


>gi|242081015|ref|XP_002445276.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
 gi|241941626|gb|EES14771.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
          Length = 768

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/408 (26%), Positives = 192/408 (47%), Gaps = 8/408 (1%)

Query: 75  IIKRLWNH--ALKALHFFNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMK 130
           ++K L N   A +AL   ++++     +H+P+  ++   ID   + +       +   M 
Sbjct: 170 LLKGLCNEKRAEEALELMHMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMI 229

Query: 131 SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190
              + P   T+  +   Y+S GK    V++   M  HG +     +  +LD LCK  +  
Sbjct: 230 DKGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQEMSTHGLQPDCVIYAVLLDYLCKNGRCT 289

Query: 191 KAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL 249
           +A N+F  + R   K  V  Y ++ +G+      ++    L  MV  G++P+   +NI+ 
Sbjct: 290 EARNIFDSLIRKGIKPHVTIYGILLHGYATEGALSEMHSFLDLMVRNGVSPDHHIFNIMF 349

Query: 250 KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309
             Y +   I+EA   F +M+++     VV Y  ++     +G +  A   F+ M+N GV 
Sbjct: 350 NAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDALCKLGRVDDAVLKFNQMINEGVT 409

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           P +  +++++  LC  D  E A  +F E++ +G   N+  +N+++  LC  G +  A   
Sbjct: 410 PDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFNILMCNLCREGRVMEAQRL 469

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
           +  M   +  P+V +YN L+   C  G I+   +L + M S    P+  TYN L+     
Sbjct: 470 IDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTLLHGYCK 529

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
            ++ DD   A  L  EM+ +G  P   T+N +L+GL  IG    AKE+
Sbjct: 530 ARRIDD---AYSLFREMLMKGLTPGVVTYNTILHGLFQIGRFCEAKEL 574



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 176/370 (47%), Gaps = 9/370 (2%)

Query: 85  KALHFFNILSYHPTYAHSPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
           +A+H F+ +        SP   ++   ID   +L          ++M +  + P    F+
Sbjct: 360 EAMHIFDKMRQQWL---SPGVVNYGALIDALCKLGRVDDAVLKFNQMINEGVTPDIFVFS 416

Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV-FRG 201
            +     +  K ++A K+F  + + G R +   FN ++  LC+E +V +A  L  +  R 
Sbjct: 417 SLVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFNILMCNLCREGRVMEAQRLIDLMLRV 476

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
             + DVISYN + +G CL  R ++A ++L  MV  GL P+  TYN +L GY +A +I++A
Sbjct: 477 DVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTLLHGYCKARRIDDA 536

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
           +  F EM  +     VVTY TI+HG   +G    A+ ++  M+N      + TY  ++  
Sbjct: 537 YSLFREMLMKGLTPGVVTYNTILHGLFQIGRFCEAKELYLNMINNRRKCDIYTYTIILNG 596

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           LC+ + V+ A  +F+ +  K    +  T N++I  L   G  E A++    +      P+
Sbjct: 597 LCRNNFVDEAFKMFQSLCSKDLQLDIFTINIMIGALLKGGRKEDAMDLFATISAYGLVPD 656

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
           V+TY ++       G +E   ELF  M      PN    N L+  +  R    D+  AG 
Sbjct: 657 VETYRLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLHRG---DIGRAGV 713

Query: 442 LLIEMVDRGF 451
            L ++ ++ F
Sbjct: 714 YLSKLDEKNF 723



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/384 (25%), Positives = 175/384 (45%), Gaps = 21/384 (5%)

Query: 98  TYAHSPS--SFDHAIDLAARLR---DYRTVWTLVHRMK---SLSLGPTQKTFAIIAERYV 149
           TYA   S  +F+  + + +R R       V +L +RM    S+ + P+  T+ I+   + 
Sbjct: 44  TYARPASVRTFNRLLTVVSRARCSSASELVVSLFNRMIRECSVKVAPSSCTYTILIGCFC 103

Query: 150 SAGKADRAVKIFLSMHEHGCRQSLNS---FNTILDLLCKEKKVEKAYNLFKVFRGKFKA- 205
             G+       F  + + G   SLN+   F  +L  LC  K+V++A ++      +F   
Sbjct: 104 RMGRLKHGFAAFGLILKTG--WSLNNTVIFGQLLKGLCDAKRVDEATDILLRRMPEFGCT 161

Query: 206 -DVISYNVIANGWCLVKRTNKALEVLKEMVDRG---LNPNLTTYNIVLKGYFRAGQIEEA 261
            +VISYN++  G C  KR  +ALE++  M D G     PN+ TY  V+ G  +A  ++ A
Sbjct: 162 LNVISYNILLKGLCNEKRAEEALELMHMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRA 221

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
              F  M  +    +  TYT ++HG+   G+ K    +   M   G+ P    Y  ++  
Sbjct: 222 KGVFQHMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQEMSTHGLQPDCVIYAVLLDY 281

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           LCK      A  +F+ ++ KG  P+ T Y +++ G    G +     F+  M  +   P+
Sbjct: 282 LCKNGRCTEARNIFDSLIRKGIKPHVTIYGILLHGYATEGALSEMHSFLDLMVRNGVSPD 341

Query: 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGK 441
              +NI+   +     I+  + +F+KM      P +  Y  LI ++    + DD ++   
Sbjct: 342 HHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDALCKLGRVDDAVLK-- 399

Query: 442 LLIEMVDRGFMPRKFTFNRVLNGL 465
              +M++ G  P  F F+ ++ GL
Sbjct: 400 -FNQMINEGVTPDIFVFSSLVYGL 422



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 133/272 (48%), Gaps = 1/272 (0%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M  + + P   ++  + + +   G+ D A K+   M   G +    ++NT+L   C
Sbjct: 469 LIDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTLLHGYC 528

Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           K ++++ AY+LF+    K     V++YN I +G   + R  +A E+   M++     ++ 
Sbjct: 529 KARRIDDAYSLFREMLMKGLTPGVVTYNTILHGLFQIGRFCEAKELYLNMINNRRKCDIY 588

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY I+L G  R   ++EA++ F  +  +  ++D+ T   ++      G  + A ++F  +
Sbjct: 589 TYTIILNGLCRNNFVDEAFKMFQSLCSKDLQLDIFTINIMIGALLKGGRKEDAMDLFATI 648

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
              G++P V TY  + + L K+ S+E    +F  M   G  PNS   N ++R L H G++
Sbjct: 649 SAYGLVPDVETYRLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLHRGDI 708

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395
            RA  ++ ++ +        T ++LI  +  A
Sbjct: 709 GRAGVYLSKLDEKNFSLEASTTSMLISIYSRA 740



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 141/335 (42%), Gaps = 16/335 (4%)

Query: 143 IIAERYVSAGKA-DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG 201
           +IA R  S     D A+K+F  M  +    S+ +FN +L ++ + +    +  +  +F  
Sbjct: 20  VIAGRARSGSLGLDDALKLFDEMLTYARPASVRTFNRLLTVVSRARCSSASELVVSLFNR 79

Query: 202 -------KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT-YNIVLKGYF 253
                  K      +Y ++   +C + R          ++  G + N T  +  +LKG  
Sbjct: 80  MIRECSVKVAPSSCTYTILIGCFCRMGRLKHGFAAFGLILKTGWSLNNTVIFGQLLKGLC 139

Query: 254 RAGQIEEAWRFFL-EMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV---NGGVL 309
            A +++EA    L  M +  C ++V++Y  ++ G       + A  +   M    +G   
Sbjct: 140 DAKRVDEATDILLRRMPEFGCTLNVISYNILLKGLCNEKRAEEALELMHMMADDGDGSHT 199

Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369
           P+V TY  +I  LCK   V+ A  VF+ M+ KG  PN+ TY  +I G   TG+ +  ++ 
Sbjct: 200 PNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQM 259

Query: 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429
           +  M     +P+   Y +L+ Y C  G       +F+ +      P++  Y IL+     
Sbjct: 260 LQEMSTHGLQPDCVIYAVLLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIYGILLHGYAT 319

Query: 430 RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
                ++      L  MV  G  P    FN + N 
Sbjct: 320 EGALSEM---HSFLDLMVRNGVSPDHHIFNIMFNA 351


>gi|225465635|ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial [Vitis vinifera]
 gi|296085293|emb|CBI29025.3| unnamed protein product [Vitis vinifera]
          Length = 854

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/354 (28%), Positives = 163/354 (46%), Gaps = 40/354 (11%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P   +F+I+ +   + GK D A+ +F  M   GC+Q++  +N ++D L    ++E+ Y L
Sbjct: 455 PDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLL 514

Query: 196 FKVFRG------KFKADVI------------------------------SYNVIANGWCL 219
            K  +G      +F  + I                               Y ++    C 
Sbjct: 515 LKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCK 574

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
            KR+ +A   L EMV  G  P++  Y+  + G+ +   +++A   F ++  R    DVV 
Sbjct: 575 RKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVA 634

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y T+++GF  V  +  A ++ D MV  G++PSV TYN +I   CK   ++ A      MV
Sbjct: 635 YNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMV 694

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
           GK   PN  TY  +I GLC+ G  + A+     M+   C PN  ++  LI   C  G  +
Sbjct: 695 GKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCGWPD 754

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
             L  F +MG     P+   Y  LI+S F+  K+  L  A ++L EMV +G  P
Sbjct: 755 AALLYFREMGERE-TPDTIVYVALITS-FISNKNPTL--AFEILKEMVAKGKFP 804



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/392 (21%), Positives = 173/392 (44%), Gaps = 53/392 (13%)

Query: 123 WTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182
           + L+ RM+ L +   +KTF ++   +V   + D+A+++F  M + G    ++ ++ ++  
Sbjct: 288 FELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGG 347

Query: 183 LCKEKKVEKAYNLFKVFRG----------------------------------KFKADVI 208
           LC +K++EKA +L    +                                     +A ++
Sbjct: 348 LCAKKEIEKALHLLSEMKELGIDPDIQILSKLIAYCSEEVDIYRLIEERLEDLDTEAMLL 407

Query: 209 SYNVIANGWCLVKRTNKALEVLKE----------------MVDRGLNPNLTTYNIVLKGY 252
            YN + NG    K  +KA  +L+                 MV   + P+ T+++IV+ G 
Sbjct: 408 LYNSVLNGLVNGKSVDKAYYLLRAMTGDNYTDNFEVNKFFMVKEMVRPDTTSFSIVIDGL 467

Query: 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
              G+++ A   F +M +  C+ +V+ Y  ++        ++    +   M   G  P+ 
Sbjct: 468 CNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLLLKEMKGSGFRPTQ 527

Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372
            T+N++   LC+++ V  A+ +  EM   G+ P    Y ++++ LC       A  F+  
Sbjct: 528 FTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCKRKRSAEACNFLAE 587

Query: 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432
           M  +   P++  Y+  I  F     +++ LE+F  + +    P++  YN LI+     K+
Sbjct: 588 MVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKR 647

Query: 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
             +   A  +L EMV +G +P   T+N +++G
Sbjct: 648 VSE---AHDILDEMVAKGLVPSVVTYNLLIDG 676



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/400 (23%), Positives = 168/400 (42%), Gaps = 57/400 (14%)

Query: 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVF 199
            +I+   +   G+ D+A ++   M + G R +  +F  ++    ++ +V+KA  LF K+ 
Sbjct: 271 LSILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQ 330

Query: 200 RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN------------------ 241
           +  F  DV  Y+ +  G C  K   KAL +L EM + G++P+                  
Sbjct: 331 KSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLIAYCSEEVDIY 390

Query: 242 ---------------LTTYNIVLKGYFRAGQIEEAW------------------RFFLEM 268
                          L  YN VL G      +++A+                  +FF  M
Sbjct: 391 RLIEERLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLRAMTGDNYTDNFEVNKFF--M 448

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
            K     D  +++ ++ G    G++  A ++F  MV  G   +V  YN +I  L   + +
Sbjct: 449 VKEMVRPDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRL 508

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           E   L+ +EM G G+ P   T+N +   LC   ++  AL+ V  M+    EP ++ Y +L
Sbjct: 509 EECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLL 568

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           ++  C             +M     LP++  Y+  I   FV+ K+ D   A ++  ++  
Sbjct: 569 VKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDG-FVKIKAVD--QALEIFRDICA 625

Query: 449 RGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
           RG+ P    +N ++NG   +     A +IL      G +P
Sbjct: 626 RGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVP 665



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 131/286 (45%), Gaps = 37/286 (12%)

Query: 103 PSSFDH--AIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P+ F H        R  D      +V  M+     P  K + ++ ++     ++  A   
Sbjct: 525 PTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCKRKRSAEACNF 584

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCL 219
              M   G    + +++  +D   K K V++A  +F+    + +  DV++YN + NG+C 
Sbjct: 585 LAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCK 644

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
           VKR ++A ++L EMV +GL P++ TYN+++ G+ + G I++A+     M  ++ E +V+T
Sbjct: 645 VKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVIT 704

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK--------------- 324
           YTT++ G    G    A ++++ M   G  P+  ++ A+I  LCK               
Sbjct: 705 YTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCGWPDAALLYFREMG 764

Query: 325 ----KDSV------------ENAILVFE---EMVGKGYMPNSTTYN 351
                D++            +N  L FE   EMV KG  P+    N
Sbjct: 765 ERETPDTIVYVALITSFISNKNPTLAFEILKEMVAKGKFPDPLDKN 810



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 138/288 (47%), Gaps = 24/288 (8%)

Query: 218 CLVKRTNKALEV------LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271
           CL++  +K+  +      LKEM D G  P+  T   VL+ Y  + + ++A   F E+  R
Sbjct: 204 CLLEAISKSGSIDLVEMRLKEMCDSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGR 263

Query: 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331
              +D    + +V  F   GE+ +A  + + M + G+  +  T+  +I    ++  V+ A
Sbjct: 264 GW-VDGHVLSILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKA 322

Query: 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391
           + +F++M   G+ P+ + Y+ +I GLC   E+E+AL  +  MK+   +P++Q  + LI Y
Sbjct: 323 LQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLIAY 382

Query: 392 FCDAGEIERGLE-------------LFEKMGSG-VCLPNLDTYNILISSMFVRKKSDDLL 437
             +  +I R +E             L+  + +G V   ++D    L+ +M     +D+  
Sbjct: 383 CSEEVDIYRLIEERLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLRAMTGDNYTDNFE 442

Query: 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485
           V    +++ + R   P   +F+ V++GL   G   LA  + R   R G
Sbjct: 443 VNKFFMVKEMVR---PDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVG 487



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/350 (20%), Positives = 141/350 (40%), Gaps = 57/350 (16%)

Query: 158 VKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY--------NLFKVF-RGKFKAD-- 206
           +++F    +    Q+L++F+  L L+C +     +          L  +F +  F  D  
Sbjct: 25  IQLFFYTQKSLFTQNLSTFSQFLRLICTKSSASFSSPHGAHITNALISIFTKQPFNPDNQ 84

Query: 207 -------VISYNVIANGWCLVKRTNKALEVLKEMVDRG-LNPNLTTYNIVLKGYFRAGQI 258
                  ++++ V+ N    +K    A        D+G  N N  TYN +      A Q 
Sbjct: 85  ELRNFGSMLTHEVVENVLSGLKSWKIAYRFFNWASDQGGFNHNCYTYNAMASCLSHARQN 144

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM-VNGGVLPSVATYNA 317
                  +++   +C +        +   G  G ++ A  +FD + +    +P+  ++N 
Sbjct: 145 APLSLLSMDIVNSRCAMSPGALGFFIRCLGSTGLVEEANLLFDQVKMMRLCVPNSYSFNC 204

Query: 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT----------------- 360
           +++ + K  S++   +  +EM   G+ P+  T   V++  C++                 
Sbjct: 205 LLEAISKSGSIDLVEMRLKEMCDSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRG 264

Query: 361 -----------------GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
                            GE+++A E + RM+D     N +T+ +LI  F     +++ L+
Sbjct: 265 WVDGHVLSILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQ 324

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
           LF+KM      P++  Y+ LI  +  +K+ +  L    LL EM + G  P
Sbjct: 325 LFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKAL---HLLSEMKELGIDP 371


>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
          Length = 479

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/435 (25%), Positives = 200/435 (45%), Gaps = 11/435 (2%)

Query: 67  WTPQLVDQIIKRLWNHAL---KALHFFNILS--YHPTYAHSPSSFDHAIDLAARLRDYRT 121
           W  Q+ + ++++L        K L  F+  +  Y   + H  ++F   I     +  +R 
Sbjct: 9   WPKQITNSLVEQLIKAEKDINKTLVMFDSATEEYSNGFRHDHNTFGAMIHRLVSVNQFRP 68

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
              ++ RMK      T+  F  I   Y    +   A+++F  M +   + +  S+ T+ D
Sbjct: 69  AEGMLERMKQEDCEVTEDVFLTICRGYGRVHRPLDAIRVFHKMEDFQVKPTQKSYLTVFD 128

Query: 182 LLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRT-NKALEVLKEMVDRGLN 239
           +L +E  V++A   +K  R K     V+S N++    C  + T   A  + +EM +RG  
Sbjct: 129 ILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEETVESAFRLFREMPNRGCQ 188

Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
           P+  TY  ++ G  + G+I +A     EM+++     VV+YT+++HG      +  A  +
Sbjct: 189 PDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIEL 248

Query: 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
            + M+  G+ P+V TY++++  LCK      A+ + E MV +  +PN  TY+ +I GLC 
Sbjct: 249 LEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCK 308

Query: 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLD- 418
            G+   A+E + RM+    +P+   Y  +I   C A   +      ++M  G   PN   
Sbjct: 309 EGKHREAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEMALGGISPNRAS 368

Query: 419 -TYNILISSMFVRKKSD--DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAK 475
            T+++ + +M V+   +  D   A +L + M  RG      TF+ ++      G+   A 
Sbjct: 369 WTFHVKMHNMVVQGLCNNVDPTRAFQLYLSMRTRGISVEIGTFDCLVKCFCKRGDLNKAA 428

Query: 476 EILRLQSRCGRLPRQ 490
            IL      G +P +
Sbjct: 429 RILEEMILDGCIPDE 443



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 173/360 (48%), Gaps = 47/360 (13%)

Query: 127 HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK- 185
           H+M+   + PTQK++  + +  V      RA+  +  M E G   ++ S N ++  LCK 
Sbjct: 109 HKMEDFQVKPTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKN 168

Query: 186 EKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
           E+ VE A+ LF+    +  + D  +Y  + NG C + + ++A E+L EM ++GL+P++ +
Sbjct: 169 EETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVS 228

Query: 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
           Y  ++ G  ++  ++EA     EM     E +V TY++++ G    G   +A  + + MV
Sbjct: 229 YTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMV 288

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY-------------- 350
              +LP++ TY+ +I  LCK+     A+ + + M  +G  P++  Y              
Sbjct: 289 RRRLLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQ 348

Query: 351 ----------------------------NVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
                                       N+V++GLC+  +  RA +    M+       +
Sbjct: 349 EAANFIDEMALGGISPNRASWTFHVKMHNMVVQGLCNNVDPTRAFQLYLSMRTRGISVEI 408

Query: 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK---SDDLLVA 439
            T++ L++ FC  G++ +   + E+M    C+P+   +N+L+  ++ RKK   + +LLVA
Sbjct: 409 GTFDCLVKCFCKRGDLNKAARILEEMILDGCIPDEGMWNVLMCGLWDRKKVRETTELLVA 468


>gi|357503117|ref|XP_003621847.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496862|gb|AES78065.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 457

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/384 (27%), Positives = 186/384 (48%), Gaps = 11/384 (2%)

Query: 90  FNILSYHPTYAHSPS--SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147
           +NIL+       +P   S++     A R    +    L   M    + P   ++ I+   
Sbjct: 62  YNILNRMKEAGINPDVVSYNSLSSGAVRKCLLQKSLDLFDEMLQSGIRPDVWSYNILMHC 121

Query: 148 YVSAGKADRAVKIFLSMHEHG-CRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKA 205
           Y   GK + A  +F  + E G    S+ S+N +++ LCK   V  A  LF+  R + F  
Sbjct: 122 YFRLGKPEEANGVFRDIFERGEIYPSMASYNVMINGLCKNGYVNNALMLFRNLRRRGFVP 181

Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
           +V++YN + NG C  +R   A  VL E  D G  PN  TY  V+K  FR G++E+     
Sbjct: 182 EVLTYNAMINGLCKARRLADARRVLNEFCDFGFEPNAITYTTVMKCCFRCGRLEQGLEIL 241

Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
            EM+++    D   Y T+V      G I+ A  + + M++ G++P +A+YN MI + C++
Sbjct: 242 SEMRRKGFTFDGFAYCTVVAALVKTGRIEEADEIAEKMMSNGLVPDLASYNTMINLFCRQ 301

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
              + A+ + +E+  +G   +  T+ ++I GLC  G  E A + +  M       N+  +
Sbjct: 302 GRFDEALRLVDEIEKQGMKCDQYTHTIIIHGLCKDGNFEGAEKHLDYMNTLGFGFNLVAF 361

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
           N ++     AG+I++ +++F+ M     + +  TY  L+ ++   KK     +A KLL+ 
Sbjct: 362 NSILDCLGKAGDIDKAVKVFDSME----VKDSFTYTSLLHNLCRAKK---FRIASKLLVA 414

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIG 469
            ++ GF   + T   V++GL   G
Sbjct: 415 SIEDGFQILRATQRAVIDGLTTSG 438



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 155/313 (49%), Gaps = 8/313 (2%)

Query: 170 RQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
           R S    N  +  +CK  ++ KA   L    +     D+I+YN + +G+C     + A  
Sbjct: 4   RLSTKFMNITISTMCKSNQIAKAETVLIDGIKLGLNPDIITYNTLIDGYCRFVGIDAAYN 63

Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
           +L  M + G+NP++ +YN +  G  R   ++++   F EM +     DV +Y  ++H + 
Sbjct: 64  ILNRMKEAGINPDVVSYNSLSSGAVRKCLLQKSLDLFDEMLQSGIRPDVWSYNILMHCYF 123

Query: 289 VVGEIKRARNVF-DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
            +G+ + A  VF D    G + PS+A+YN MI  LCK   V NA+++F  +  +G++P  
Sbjct: 124 RLGKPEEANGVFRDIFERGEIYPSMASYNVMINGLCKNGYVNNALMLFRNLRRRGFVPEV 183

Query: 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407
            TYN +I GLC    +  A   +    D   EPN  TY  +++     G +E+GLE+  +
Sbjct: 184 LTYNAMINGLCKARRLADARRVLNEFCDFGFEPNAITYTTVMKCCFRCGRLEQGLEILSE 243

Query: 408 MGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467
           M       +   Y  +++++    K+  +  A ++  +M+  G +P   ++N ++N   L
Sbjct: 244 MRRKGFTFDGFAYCTVVAALV---KTGRIEEADEIAEKMMSNGLVPDLASYNTMIN---L 297

Query: 468 IGNQGLAKEILRL 480
              QG   E LRL
Sbjct: 298 FCRQGRFDEALRL 310



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 113/241 (46%), Gaps = 4/241 (1%)

Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
           NI +    ++ QI +A    ++  K     D++TY T++ G+     I  A N+ + M  
Sbjct: 11  NITISTMCKSNQIAKAETVLIDGIKLGLNPDIITYNTLIDGYCRFVGIDAAYNILNRMKE 70

Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
            G+ P V +YN++     +K  ++ ++ +F+EM+  G  P+  +YN+++      G+ E 
Sbjct: 71  AGINPDVVSYNSLSSGAVRKCLLQKSLDLFDEMLQSGIRPDVWSYNILMHCYFRLGKPEE 130

Query: 366 ALE-FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
           A   F    +  E  P++ +YN++I   C  G +   L LF  +     +P + TYN +I
Sbjct: 131 ANGVFRDIFERGEIYPSMASYNVMINGLCKNGYVNNALMLFRNLRRRGFVPEVLTYNAMI 190

Query: 425 SSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484
           + +   ++  D   A ++L E  D GF P   T+  V+      G      EIL    R 
Sbjct: 191 NGLCKARRLAD---ARRVLNEFCDFGFEPNAITYTTVMKCCFRCGRLEQGLEILSEMRRK 247

Query: 485 G 485
           G
Sbjct: 248 G 248



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 90/198 (45%), Gaps = 11/198 (5%)

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KV 198
            +  +    V  G+ + A +I   M  +G    L S+NT+++L C++ + ++A  L  ++
Sbjct: 255 AYCTVVAALVKTGRIEEADEIAEKMMSNGLVPDLASYNTMINLFCRQGRFDEALRLVDEI 314

Query: 199 FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
            +   K D  ++ +I +G C       A + L  M   G   NL  +N +L    +AG I
Sbjct: 315 EKQGMKCDQYTHTIIIHGLCKDGNFEGAEKHLDYMNTLGFGFNLVAFNSILDCLGKAGDI 374

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           ++A + F  M+ +    D  TYT+++H      + + A  +    +  G     AT  A+
Sbjct: 375 DKAVKVFDSMEVK----DSFTYTSLLHNLCRAKKFRIASKLLVASIEDGFQILRATQRAV 430

Query: 319 IQVLCKKDSVENAILVFE 336
           I      D +  + LV+E
Sbjct: 431 I------DGLTTSGLVYE 442



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 3/169 (1%)

Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
           +S++  I+L  R   +     LV  ++   +   Q T  II       G  + A K    
Sbjct: 289 ASYNTMINLFCRQGRFDEALRLVDEIEKQGMKCDQYTHTIIIHGLCKDGNFEGAEKHLDY 348

Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRT 223
           M+  G   +L +FN+ILD L K   ++KA  +F     K   D  +Y  + +  C  K+ 
Sbjct: 349 MNTLGFGFNLVAFNSILDCLGKAGDIDKAVKVFDSMEVK---DSFTYTSLLHNLCRAKKF 405

Query: 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272
             A ++L   ++ G      T   V+ G   +G + EA +  L++++ +
Sbjct: 406 RIASKLLVASIEDGFQILRATQRAVIDGLTTSGLVYEARKVKLKIQRAR 454


>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Vitis vinifera]
          Length = 939

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/376 (27%), Positives = 176/376 (46%), Gaps = 16/376 (4%)

Query: 91  NILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVS 150
           NI++YH             I+    L D      ++  M    +     T+ ++ + Y  
Sbjct: 260 NIVTYHSL-----------INGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCK 308

Query: 151 AGKADRAVKIFLSMHEHGCR-QSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVI 208
             K D A K+   M E         ++  ++D  C+  K++ A  L  ++ R   K ++ 
Sbjct: 309 QCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLF 368

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
             N + NG+C     ++A  V+  MVD  L P+  +YN +L GY R G   EA+    +M
Sbjct: 369 ICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKM 428

Query: 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328
            +   E  V+TY T++ G   VG    A  ++  M+  GV P    Y+ ++  L K ++ 
Sbjct: 429 LQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENF 488

Query: 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388
           E A  ++++++ +G+  +  T+N +I GLC  G+M  A E   +MKD  C P+  TY  L
Sbjct: 489 EGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTL 548

Query: 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
           I  +C A  + +  ++   M      P+++ YN LIS +F   KS  L+    LL EM  
Sbjct: 549 IDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLF---KSRRLVEVTDLLTEMGI 605

Query: 449 RGFMPRKFTFNRVLNG 464
           RG  P   T+  +++G
Sbjct: 606 RGLTPNIVTYGALIDG 621



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 111/439 (25%), Positives = 199/439 (45%), Gaps = 32/439 (7%)

Query: 67  WTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDY------- 119
           ++  +VD +++ L  +   +L FF  +S    +  +  S+   + + +R R Y       
Sbjct: 66  FSDDIVDAVLRNLRLNPTASLGFFQFVSKQQNFRPNVKSYCKLVHILSRGRMYDETRAYL 125

Query: 120 -------------RTVWT-LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
                          +W  LV   +  +  PT   F +I + YV  G    A+ +F +M 
Sbjct: 126 NQLVDLCKFKDRGNVIWDELVGVYREFAFSPT--VFDMILKVYVEKGLTKNALYVFDNMG 183

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTN 224
           + G   SL S N++L+ L K  +   A+ ++ ++ R     DV   +++ N +C   + +
Sbjct: 184 KCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVD 243

Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
           +A   +K+M + G+ PN+ TY+ ++ GY   G +E A      M ++    +VVTYT ++
Sbjct: 244 EAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLI 303

Query: 285 HGFGVVGEIKRARNVFDGMV-NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343
            G+    ++  A  V  GM     ++P    Y  +I   C+   +++A+ + +EM+  G 
Sbjct: 304 KGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGL 363

Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
             N    N +I G C  GE+  A   + RM D   +P+  +YN L+  +C  G       
Sbjct: 364 KTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFN 423

Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463
           L +KM      P + TYN L+  +      DD L    L   M+ RG  P +  ++ +L+
Sbjct: 424 LCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHL---MMKRGVAPDEVGYSTLLD 480

Query: 464 GLLLI----GNQGLAKEIL 478
           GL  +    G   L K+IL
Sbjct: 481 GLFKMENFEGASTLWKDIL 499



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 149/292 (51%), Gaps = 36/292 (12%)

Query: 153 KADRAVKIFLSMHEHGCRQ---SLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVI 208
           K+ R V++   + E G R    ++ ++  ++D  CKE  ++KA++  F++      A++I
Sbjct: 589 KSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANII 648

Query: 209 SYNVIANGWCLVKRTNKALEVLKEMVDRG------------------------------- 237
             + + +G   + R ++A  ++++MVD G                               
Sbjct: 649 ICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKT 708

Query: 238 -LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
            L PN   YNI + G  + G++++A RFF  +  +    D  TY T++HG+   G +  A
Sbjct: 709 FLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEA 768

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
             + D M+  G++P++ TYNA+I  LCK ++V+ A  +F ++  KG  PN  TYN +I G
Sbjct: 769 FRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDG 828

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
            C  G M+ A +   +M ++   P+V TY+ LI   C  G+IER ++L  +M
Sbjct: 829 YCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQM 880



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 162/362 (44%), Gaps = 39/362 (10%)

Query: 133 SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
           +L P ++ + ++ + Y   GK D AV++   M   G + +L   N++++  CK  ++ +A
Sbjct: 327 ALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEA 386

Query: 193 YNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
             +  ++     K D  SYN + +G+C    T++A  +  +M+  G+ P + TYN +LKG
Sbjct: 387 EGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKG 446

Query: 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS 311
             R G  ++A + +  M KR    D V Y+T++ G   +   + A  ++  ++  G   S
Sbjct: 447 LCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKS 506

Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG 371
             T+N MI  LCK   +  A  +F++M   G  P+  TY  +I G C    + +A +  G
Sbjct: 507 RITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKG 566

Query: 372 RMKDDECEP-----------------------------------NVQTYNILIRYFCDAG 396
            M+ +   P                                   N+ TY  LI  +C  G
Sbjct: 567 AMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEG 626

Query: 397 EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456
            +++    + +M       N+   + ++S ++   + D+   A  L+ +MVD GF P   
Sbjct: 627 MLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDE---ANLLMQKMVDHGFFPDHE 683

Query: 457 TF 458
            F
Sbjct: 684 CF 685



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 99/421 (23%), Positives = 181/421 (42%), Gaps = 39/421 (9%)

Query: 99  YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
           +  S  +F+  I    ++        +  +MK L   P   T+  + + Y  A    +A 
Sbjct: 503 FTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAF 562

Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF--RGKFKADVISYNVIANG 216
           K+  +M       S+  +N+++  L K +++ +  +L      RG    ++++Y  + +G
Sbjct: 563 KVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRG-LTPNIVTYGALIDG 621

Query: 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA--------------- 261
           WC     +KA     EM + GL+ N+   + ++ G +R G+I+EA               
Sbjct: 622 WCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPD 681

Query: 262 WRFFLEMKKRKCEI-----------------DVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
              FL+   R   I                 + + Y   + G    G++  AR  F  + 
Sbjct: 682 HECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLS 741

Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
             G +P   TY  +I       +V+ A  + +EM+ +G +PN  TYN +I GLC +  ++
Sbjct: 742 LKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVD 801

Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424
           RA     ++      PNV TYN LI  +C  G ++   +L +KM      P++ TY+ LI
Sbjct: 802 RAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALI 861

Query: 425 SSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN-QGLAKEILRLQSR 483
           + +    K  D+  + KLL +M+  G   +   +  ++ G +  G  Q + K    +  R
Sbjct: 862 NGLC---KHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGYIRSGEMQKIHKLYDMMHIR 918

Query: 484 C 484
           C
Sbjct: 919 C 919



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 96/421 (22%), Positives = 176/421 (41%), Gaps = 38/421 (9%)

Query: 103 PSSFDHAIDLAARLRDYRT--VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P S+ +   L    R+  T   + L  +M    + PT  T+  + +     G  D A++I
Sbjct: 400 PDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQI 459

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCL 219
           +  M + G       ++T+LD L K +  E A  L+K +    F    I++N + +G C 
Sbjct: 460 WHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCK 519

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
           + +  +A E+  +M D G +P+  TY  ++ GY +A  + +A++    M++      +  
Sbjct: 520 MGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEM 579

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y +++ G      +    ++   M   G+ P++ TY A+I   CK+  ++ A   + EM 
Sbjct: 580 YNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMT 639

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMER----------------------------ALEFVG 371
             G   N    + ++ GL   G ++                             A++ + 
Sbjct: 640 ENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIA 699

Query: 372 RMKDDECE----PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
              D+ C+    PN   YNI I   C  G+++     F  +     +P+  TY  LI   
Sbjct: 700 DSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGY 759

Query: 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487
                 D+   A +L  EM+ RG +P   T+N ++NGL    N   A+ +     + G  
Sbjct: 760 SAAGNVDE---AFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLF 816

Query: 488 P 488
           P
Sbjct: 817 P 817



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/391 (22%), Positives = 166/391 (42%), Gaps = 39/391 (9%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++ RM   +L P   ++  + + Y   G    A  +   M + G   ++ ++NT+L  LC
Sbjct: 389 VITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLC 448

Query: 185 KEKKVEKAYNLFKVFRGKFKA-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           +    + A  ++ +   +  A D + Y+ + +G   ++    A  + K+++ RG   +  
Sbjct: 449 RVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRI 508

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           T+N ++ G  + G++ EA   F +MK   C  D +TY T++ G+     + +A  V   M
Sbjct: 509 TFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAM 568

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
               + PS+  YN++I  L K   +     +  EM  +G  PN  TY  +I G C  G +
Sbjct: 569 EREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGML 628

Query: 364 ERALEFVGRMKDDECEPN----------------VQTYNILIRYFCDAG----------- 396
           ++A      M ++    N                +   N+L++   D G           
Sbjct: 629 DKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKS 688

Query: 397 -----EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
                 I++  +  ++      LPN   YNI I+ +    K DD   A +    +  +GF
Sbjct: 689 DIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDD---ARRFFSMLSLKGF 745

Query: 452 MPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
           +P  FT+  +++G    GN     E  RL+ 
Sbjct: 746 VPDNFTYCTLIHGYSAAGN---VDEAFRLRD 773



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 95/195 (48%), Gaps = 8/195 (4%)

Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
           G  K A  VFD M   G +PS+ + N+++  L K      A  V+++M+  G +P+    
Sbjct: 170 GLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMV 229

Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410
           ++++   C  G+++ A  FV +M++   EPN+ TY+ LI  +   G++E    + + M  
Sbjct: 230 SIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSE 289

Query: 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR-GFMPRKFTFNRVLNGLLLIG 469
                N+ TY +LI     + K D+   A K+L  M +    +P +  +  +++G    G
Sbjct: 290 KGVSRNVVTYTLLIKGYCKQCKMDE---AEKVLRGMQEEAALVPDERAYGVLIDGYCRTG 346

Query: 470 NQG----LAKEILRL 480
                  L  E+LRL
Sbjct: 347 KIDDAVRLLDEMLRL 361



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 101/210 (48%), Gaps = 25/210 (11%)

Query: 86  ALHFFNILSY---------HPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGP 136
           A  FF++LS          + T  H  S+  + +D A RLRD          M    L P
Sbjct: 733 ARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGN-VDEAFRLRD---------EMLRRGLVP 782

Query: 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL- 195
              T+  +      +   DRA ++F  +H+ G   ++ ++NT++D  CK   ++ A+ L 
Sbjct: 783 NIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLK 842

Query: 196 FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255
            K+        V++Y+ + NG C      +++++L +M+  G++  L  Y  +++GY R+
Sbjct: 843 DKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGYIRS 902

Query: 256 GQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
           G++++  + + +M   +C    ++ T I H
Sbjct: 903 GEMQKIHKLY-DMMHIRC----LSTTAISH 927



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 82/181 (45%), Gaps = 4/181 (2%)

Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
           S   ++ +++V  +K   +NA+ VF+ M   G +P+  + N ++  L   GE   A    
Sbjct: 155 SPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVY 214

Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
            +M      P+V   +I++  FC  G+++      +KM +    PN+ TY+ LI+     
Sbjct: 215 QQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYV-- 272

Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR-LQSRCGRLPR 489
               D+  A  +L  M ++G      T+  ++ G         A+++LR +Q     +P 
Sbjct: 273 -SLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPD 331

Query: 490 Q 490
           +
Sbjct: 332 E 332


>gi|108862162|gb|ABA95747.2| Cytochrome P450 family protein [Oryza sativa Japonica Group]
          Length = 1595

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 175/397 (44%), Gaps = 39/397 (9%)

Query: 105  SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
            ++   I+   +  D   + +L   M+     P  + +  + +   +   A +A+ I   M
Sbjct: 1050 TYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCNCRSATQAMVILKQM 1109

Query: 165  HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRT 223
               GC   + +FNT++  LC E  V KA +  +   R +   + +SY  + +G+C+    
Sbjct: 1110 FASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGEL 1169

Query: 224  NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW--------------------- 262
              A ++L EM+ RG  P++ T+  ++ G   AG++ EA                      
Sbjct: 1170 MVASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVL 1229

Query: 263  --------------RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308
                              EM ++  + D   Y T++ GF     +  AR +F+ M + GV
Sbjct: 1230 ISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGV 1289

Query: 309  LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368
             P + + NAMI+  C+   +  AIL    M   G +P+  TY  VI G    G +  AL 
Sbjct: 1290 CPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALR 1349

Query: 369  FVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428
            ++  M   +C+PNV TY+ LI  +C  G+ +    LF  M +    PN+ TY ILI S+F
Sbjct: 1350 WLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGLFANMQAEALSPNVVTYTILIGSLF 1409

Query: 429  VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
               K D +L AG     M+     P   T + ++NGL
Sbjct: 1410 ---KKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGL 1443



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 102/400 (25%), Positives = 182/400 (45%), Gaps = 43/400 (10%)

Query: 129  MKSLSLG---PTQKTFAIIAERYVSAGKADRAVKIFLSMHE-HGCRQSLNSFNTILDLLC 184
            ++S+SL    PT+     +   Y  AG   +A ++   + E +G    +   N +L LL 
Sbjct: 895  LQSMSLAGAAPTRACLGALVAAYADAGMLGKATEMCERVREQYGSLPEVTHCNRLLKLLV 954

Query: 185  KEKKVEKAYNLFKVFRGKFK-ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            ++++ + A  L+    GK   AD  S  V+  G CL +R  + L++++     G  P++ 
Sbjct: 955  EQRRWDDARKLYDEMLGKDSGADNYSTCVLVRGLCLERRVEEGLKLIEARWGAGCIPHVV 1014

Query: 244  TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
             YN+++ GY R G +        EM+       +VTY ++++  G  G++++  ++F  M
Sbjct: 1015 FYNVLIDGYCRRGDMGRGLLLLGEMETNGFLPTLVTYGSLINWLGKKGDLEKIGSLFLEM 1074

Query: 304  VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
               G  P+V  YN++I  LC   S   A+++ ++M   G  P+  T+N +I GLCH G +
Sbjct: 1075 RKRGFSPNVQIYNSVIDALCNCRSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHV 1134

Query: 364  ERALEFVGRMKDDECEPNVQTYNILIRYFC------------------------------ 393
             +A  F+      E  PN  +Y  LI  FC                              
Sbjct: 1135 RKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGAL 1194

Query: 394  -----DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448
                  AG++   L + EKM      P+++ YN+LIS +  ++    L  A  +L EM++
Sbjct: 1195 IHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRM---LPAAKNILEEMLE 1251

Query: 449  RGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            +   P +F +  +++G +   N G A++I       G  P
Sbjct: 1252 KNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVCP 1291



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 162/332 (48%), Gaps = 6/332 (1%)

Query: 141  FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR 200
            + ++ + Y   G   R + +   M  +G   +L ++ ++++ L K+  +EK  +LF   R
Sbjct: 1016 YNVLIDGYCRRGDMGRGLLLLGEMETNGFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMR 1075

Query: 201  GK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259
             + F  +V  YN + +  C  +   +A+ +LK+M   G +P++ T+N ++ G    G + 
Sbjct: 1076 KRGFSPNVQIYNSVIDALCNCRSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVR 1135

Query: 260  EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319
            +A  F  E  +R+   + ++YT ++HGF + GE+  A ++   M+  G  P V T+ A+I
Sbjct: 1136 KAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALI 1195

Query: 320  QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE 379
              L     V  A++V E+M  +   P+   YNV+I GLC    +  A   +  M +   +
Sbjct: 1196 HGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQ 1255

Query: 380  PNVQTYNILIRYFCDAGEIERGLELFEKMG-SGVCLPNLDTYNILISSMFVRKKSDDLLV 438
            P+   Y  LI  F  +  +    ++FE M   GVC P++ + N +I          + ++
Sbjct: 1256 PDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVC-PDIVSCNAMIKGYCQFGMMSEAIL 1314

Query: 439  AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470
                +  M   G +P +FT+  V++G    GN
Sbjct: 1315 C---MSNMRKVGCIPDEFTYTTVISGYAKQGN 1343



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 155/350 (44%), Gaps = 19/350 (5%)

Query: 136  PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
            P   TF  +    V AGK   A+ +   M E      +N +N ++  LCK++ +  A N+
Sbjct: 1186 PDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKNI 1245

Query: 196  FK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
             + +     + D   Y  + +G+   +    A ++ + M  +G+ P++ + N ++KGY +
Sbjct: 1246 LEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVCPDIVSCNAMIKGYCQ 1305

Query: 255  AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
             G + EA      M+K  C  D  TYTT++ G+   G +  A      M+     P+V T
Sbjct: 1306 FGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVT 1365

Query: 315  YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
            Y+++I   CK    ++A  +F  M  +   PN  TY ++I  L    ++ RA  +   M 
Sbjct: 1366 YSSLINGYCKTGDTDSAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETML 1425

Query: 375  DDECEPNVQTYNILIRYF------------CDAGEI---ERGLELFEKMGSGVCLPNLDT 419
             + C PN  T + L+               C+  E+   +  L +F+K+   +  P    
Sbjct: 1426 LNHCSPNDVTLHYLVNGLTSCTPCVINSICCNTSEVHGKDALLVVFKKLVFDIGDPRNSA 1485

Query: 420  YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
            YN +I S+    + + L  A      M  +G++P   TF  +L G   +G
Sbjct: 1486 YNAIIFSLC---RHNMLREALDFKNRMAKKGYVPNPITFLSLLYGFCSVG 1532



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 120/268 (44%), Gaps = 8/268 (2%)

Query: 228  EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
            + L+ M   G  P       ++  Y  AG + +A      ++++   +  VT+   +   
Sbjct: 893  DTLQSMSLAGAAPTRACLGALVAAYADAGMLGKATEMCERVREQYGSLPEVTHCNRL--L 950

Query: 288  GVVGEIKR---ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
             ++ E +R   AR ++D M+         +   +++ LC +  VE  + + E   G G +
Sbjct: 951  KLLVEQRRWDDARKLYDEMLGKDSGADNYSTCVLVRGLCLERRVEEGLKLIEARWGAGCI 1010

Query: 345  PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
            P+   YNV+I G C  G+M R L  +G M+ +   P + TY  LI +    G++E+   L
Sbjct: 1011 PHVVFYNVLIDGYCRRGDMGRGLLLLGEMETNGFLPTLVTYGSLINWLGKKGDLEKIGSL 1070

Query: 405  FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464
            F +M      PN+  YN +I ++   + +   +V   +L +M   G  P   TFN ++ G
Sbjct: 1071 FLEMRKRGFSPNVQIYNSVIDALCNCRSATQAMV---ILKQMFASGCDPDIITFNTLITG 1127

Query: 465  LLLIGNQGLAKEILRLQSRCGRLPRQFK 492
            L   G+   A+  LR   R    P Q  
Sbjct: 1128 LCHEGHVRKAEHFLREAIRRELNPNQLS 1155



 Score = 39.3 bits (90), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 36/181 (19%), Positives = 76/181 (41%), Gaps = 16/181 (8%)

Query: 136  PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
            P   T++ +   Y   G  D A  +F +M       ++ ++  ++  L K+ KV +A   
Sbjct: 1361 PNVVTYSSLINGYCKTGDTDSAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLY 1420

Query: 196  FK-VFRGKFKADVISYNVIANGW-----CLVKRT----------NKALEVLKEMVDRGLN 239
            F+ +       + ++ + + NG      C++             +  L V K++V    +
Sbjct: 1421 FETMLLNHCSPNDVTLHYLVNGLTSCTPCVINSICCNTSEVHGKDALLVVFKKLVFDIGD 1480

Query: 240  PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299
            P  + YN ++    R   + EA  F   M K+    + +T+ ++++GF  VG+    R +
Sbjct: 1481 PRNSAYNAIIFSLCRHNMLREALDFKNRMAKKGYVPNPITFLSLLYGFCSVGKSVNWRTI 1540

Query: 300  F 300
             
Sbjct: 1541 L 1541


>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
 gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
          Length = 658

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 178/348 (51%), Gaps = 13/348 (3%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           L+  M+S    P+   + ++ +     G   R  K+  +M   GC  +  ++NT++  LC
Sbjct: 244 LLDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLC 303

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
            + K++KA +L  ++   K   + ++Y  + NG    +R      +L  M +RG   N  
Sbjct: 304 LKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEERGYRLNQH 363

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
            Y++++ G F+ G+ EEA   + +M ++ C  ++V Y+ ++ G    G+   A+ + +GM
Sbjct: 364 IYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGM 423

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           ++ G LP+V TY+++++   K    E AI V+ EM   G   N   Y+V+I GLC  G +
Sbjct: 424 ISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDGLCGVGRV 483

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC------LPNL 417
           + A+    +M     +P+   Y+ +I+  C  G ++  L+L+ +M   +C       P++
Sbjct: 484 KEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEM---LCQEEPKSQPDV 540

Query: 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
            TYNIL+  + ++K   D+  A  LL  M+DRG  P   T N  LN L
Sbjct: 541 VTYNILLDGLCMQK---DVSRAVDLLNCMLDRGCDPDVITCNTFLNTL 585



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/416 (25%), Positives = 194/416 (46%), Gaps = 50/416 (12%)

Query: 98  TYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRA 157
           ++    S+    I+  A L D+ +V  L+ R++  +    +++F ++   Y  A   ++A
Sbjct: 72  SFKLGDSTLSSMIENYANLGDFASVEKLLSRIRLENRVIIERSFIVVFRAYGKAHLPEKA 131

Query: 158 VKIFLSM-HEHGCRQSLNSFNTILDL---------------------------------- 182
           V +F  M  E  C++S+ SFN++L++                                  
Sbjct: 132 VDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFN 191

Query: 183 -----LCKEKKVEKAYNLFKVFRG----KFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
                LCK   V++A    +VFRG    K   D  +Y  + +G C  +R ++A+ +L EM
Sbjct: 192 LVIKALCKLGFVDRA---IEVFRGMPEKKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEM 248

Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
              G +P+   YN+++ G  + G +    +    M  + C  + VTY T++HG  + G++
Sbjct: 249 QSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKL 308

Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
            +A ++ + MV+   +P+  TY  +I  L K+    +   +   M  +GY  N   Y+V+
Sbjct: 309 DKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEERGYRLNQHIYSVL 368

Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
           I GL   G+ E A+    +M +  C PN+  Y+ +I   C  G+     E+   M S  C
Sbjct: 369 ISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMISSGC 428

Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469
           LPN+ TY+ L+   F    S++   A ++  EM + G    +F ++ +++GL  +G
Sbjct: 429 LPNVYTYSSLMKGFFKTGLSEE---AIQVWREMDETGCSRNEFCYSVLIDGLCGVG 481



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 134/261 (51%), Gaps = 11/261 (4%)

Query: 225 KALEVLKEMVDR-GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV----VT 279
           KA+++   MVD      ++ ++N VL      G       F+  +      +++    ++
Sbjct: 130 KAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLS 189

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           +  ++     +G + RA  VF GM     LP   TY  ++  LCK++ ++ A+L+ +EM 
Sbjct: 190 FNLVIKALCKLGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQ 249

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            +G  P+   YNV+I GLC  G++ R  + V  M    C PN  TYN LI   C  G+++
Sbjct: 250 SEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKLD 309

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
           + + L E+M S  C+PN  TY  LI+ +  ++++ D     +LLI M +RG+   +  ++
Sbjct: 310 KAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMD---GARLLISMEERGYRLNQHIYS 366

Query: 460 RVLNGLLLIGNQGLAKEILRL 480
            +++GL     +G A+E + L
Sbjct: 367 VLISGLF---KEGKAEEAMTL 384



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/266 (19%), Positives = 107/266 (40%), Gaps = 53/266 (19%)

Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
           +   ID   R         +++ M S    P   T++ + + +   G ++ A++++  M 
Sbjct: 400 YSAVIDGLCREGKPNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMD 459

Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK----------------VFRG-------- 201
           E GC ++   ++ ++D LC   +V++A  ++                 + +G        
Sbjct: 460 ETGCSRNEFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMD 519

Query: 202 ---------------KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246
                          K + DV++YN++ +G C+ K  ++A+++L  M+DRG +P++ T N
Sbjct: 520 AALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDVSRAVDLLNCMLDRGCDPDVITCN 579

Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306
             L          E  R FLE               +V        +  A  + + M+  
Sbjct: 580 TFLNTLSEKSDSCEEGRSFLE--------------ELVARLLKRQRVSGACKIVEVMLGK 625

Query: 307 GVLPSVATYNAMIQVLCKKDSVENAI 332
            + P  +T+  ++  +CK   +  AI
Sbjct: 626 YLAPKTSTWAMIVPEICKPKKINAAI 651


>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 591

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 181/358 (50%), Gaps = 6/358 (1%)

Query: 82  HALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRD--YRTVWTLVHRMKSLSLGPTQK 139
           H  KA   F++L      +  P++  + I + A  +D       +L++ MK  S+ P   
Sbjct: 193 HTQKA---FDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIF 249

Query: 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199
           T++ + +      + +    +FL M       ++ +FN+++D LCKE KVE A  + +  
Sbjct: 250 TYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYM 309

Query: 200 RGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
             K    DVI+YN+I +G+ L  + ++A E+   M+++ + P++ +YNI++ GY R  +I
Sbjct: 310 IEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILINGYARQKKI 369

Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
           +EA +   E+ ++  +  +VT   ++HG   +G  K A+N FD M++ G +P + T+  +
Sbjct: 370 DEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTL 429

Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
           +    K   VE A+  F ++  +    N   Y  VI GLC  G++++A     ++     
Sbjct: 430 LGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGL 489

Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436
            P+V TY  +I  +C  G ++   ++  KM    CL +  TYN+++       K  ++
Sbjct: 490 HPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEM 547



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/381 (26%), Positives = 182/381 (47%), Gaps = 12/381 (3%)

Query: 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161
           S +SF   +     ++ Y +V +L   +  L +   +   +I+        + D    + 
Sbjct: 71  SVASFSKLLKAMVHMKHYSSVVSLFREIHKLRIPVHEFILSIVVNSCCLMHRTDLGFSVL 130

Query: 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK--VFRGKFKADVISYNVIANGWCL 219
               + G   +  +F T++  L  E KV+ A +LFK  V     + + + Y  + NG C 
Sbjct: 131 AIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCK 190

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
              T KA ++L+ M      PN  TY IV+  + + G ++ A     EMK++    D+ T
Sbjct: 191 KGHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFT 250

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           Y+T++     + + +  R +F  M++  + P+V T+N++I  LCK+  VE+A  +   M+
Sbjct: 251 YSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMI 310

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
            KG  P+  TYN++I G    G+++RA E    M +   EP++ +YNILI  +    +I+
Sbjct: 311 EKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILINGYARQKKID 370

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFV--RKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
             +++  ++      P++ T N+L+  +F   R KS     A     EM+  G +P  +T
Sbjct: 371 EAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKS-----AQNFFDEMLSAGHIPDLYT 425

Query: 458 FNRVLNGLLLIGNQGLAKEIL 478
              +L G       GL +E +
Sbjct: 426 HCTLLGGYF---KNGLVEEAM 443



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 158/310 (50%), Gaps = 3/310 (0%)

Query: 103 PSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
           P  F ++  ID   +L  +  V TL   M  L++ P   TF  + +     GK + A +I
Sbjct: 246 PDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEI 305

Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCL 219
              M E G    + ++N I+D      +V++A  +F     K  + D+ISYN++ NG+  
Sbjct: 306 MRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILINGYAR 365

Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
            K+ ++A++V +E+  +GL P++ T N++L G F  G+ + A  FF EM       D+ T
Sbjct: 366 QKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYT 425

Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
           + T++ G+   G ++ A + F  +       ++  Y A+I  LCK   ++ A   FE++ 
Sbjct: 426 HCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLP 485

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             G  P+  TY  +I G C  G ++ A + + +M+D+ C  + +TYN+++R F  + ++ 
Sbjct: 486 LIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVS 545

Query: 400 RGLELFEKMG 409
                 E++ 
Sbjct: 546 EMKAFLEEIA 555



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 80/367 (21%), Positives = 165/367 (44%), Gaps = 39/367 (10%)

Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
           P +  +  +       G   +A  +   M +   + +  ++  ++D  CK+  ++ A +L
Sbjct: 176 PNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGATSL 235

Query: 196 FKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
               + K    D+ +Y+ + +  C + +      +  EM+   + PN+ T+N V+ G  +
Sbjct: 236 LNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCK 295

Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
            G++E+A      M ++  + DV+TY  I+ G+G+ G++ RAR +FD M+N  + P + +
Sbjct: 296 EGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIIS 355

Query: 315 YNAMIQVLCKKDSVENAILV-----------------------------------FEEMV 339
           YN +I    ++  ++ A+ V                                   F+EM+
Sbjct: 356 YNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEML 415

Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
             G++P+  T+  ++ G    G +E A+    +++    + N+Q Y  +I   C  G+++
Sbjct: 416 SAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLD 475

Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
           +    FEK+      P++ TY  +IS        D+   A  +L +M D G +    T+N
Sbjct: 476 KAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDE---AKDMLRKMEDNGCLADNRTYN 532

Query: 460 RVLNGLL 466
            ++ G L
Sbjct: 533 VIVRGFL 539


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 120/457 (26%), Positives = 203/457 (44%), Gaps = 38/457 (8%)

Query: 63  PSLHWTPQLVDQIIKR-LWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRT 121
           PS+     L+D   K  +   A + L   +  S +P    +  +++  I    R ++   
Sbjct: 142 PSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNP----NERTYNELICGFCRKKNVHR 197

Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
              L+ +M    L P+  T+  +       G  D A ++   M+E+G      +++  +D
Sbjct: 198 AMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFID 257

Query: 182 LLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240
            LCK+ ++E+A  LF   + K  KA+ + Y  + +G+C   + + A  +L  M+     P
Sbjct: 258 TLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLP 317

Query: 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300
           N +TYN ++ G  +  +++EA      M ++  +  V TYT ++      G+   A  + 
Sbjct: 318 NSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRIL 377

Query: 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT 360
           D MV+ G  P V  Y A I   C + +++ A  +   M  +G MP++ TY +VI      
Sbjct: 378 DQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGL 437

Query: 361 GEMERALEFVGRMKDDECEPNVQTYNILIR-----------------------YFCDAGE 397
           G +  A + + RM D  C+P+  TY+ LI+                       +F D  +
Sbjct: 438 GLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVAD 497

Query: 398 I------ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF 451
           +      E  LELFEKM    C PN++TY  LI  +    K   L VA KL   M +RG 
Sbjct: 498 VWKMMKFETALELFEKMLEHGCSPNINTYAKLIIGLC---KVGRLGVAQKLFDHMNERGV 554

Query: 452 MPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488
            P +  +N +LN    +G  G A  ++      G LP
Sbjct: 555 SPSEAIYNSLLNCCCELGIYGDAVRLVGAMMEHGHLP 591



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 174/375 (46%), Gaps = 4/375 (1%)

Query: 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177
           D  + +++ + M        + ++  +       G+ D  + IF  M E  C  ++ ++ 
Sbjct: 19  DVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYT 78

Query: 178 TILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
            I+  L +  +  +A NLF   R +  + ++ +Y V+ N  C   +  +   +L EMV++
Sbjct: 79  VIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEK 138

Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296
           GL P++ TYN ++ GY + G +E A      M    C  +  TY  ++ GF     + RA
Sbjct: 139 GLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRA 198

Query: 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356
             +   M+   + PSV TYN++I   CK   +++A  +   M   G +P+  TY+V I  
Sbjct: 199 MALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDT 258

Query: 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
           LC  G +E A      +K+   + N   Y  LI  +C AG+++    L ++M +  CLPN
Sbjct: 259 LCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPN 318

Query: 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKE 476
             TYN LI  +   +K  + L+   L+  M+ +G      T+  ++  +L  G+   A  
Sbjct: 319 SSTYNALIDGLCKERKVQEALL---LMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHR 375

Query: 477 ILRLQSRCGRLPRQF 491
           IL      G  P  +
Sbjct: 376 ILDQMVSSGYQPDVY 390



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 168/343 (48%), Gaps = 4/343 (1%)

Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
           ++  M    L P+  T+  + + Y   G  + A +I   MH + C  +  ++N ++   C
Sbjct: 131 ILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFC 190

Query: 185 KEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
           ++K V +A  L  K+   +    V++YN + +G C +   + A  +L  M + G+ P+  
Sbjct: 191 RKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQW 250

Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
           TY++ +    + G+IEEA   F  +K++  + + V YT ++ G+   G++  A ++ D M
Sbjct: 251 TYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRM 310

Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
           +    LP+ +TYNA+I  LCK+  V+ A+L+ E M+ KG      TY ++I  +   G+ 
Sbjct: 311 LTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDF 370

Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
           + A   + +M     +P+V  Y   I  FC  G I+   ++   M     +P+  TY ++
Sbjct: 371 DYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLV 430

Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
           I +         L  A  +L  M D G  P   T++ ++  LL
Sbjct: 431 IDAY---GGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLL 470



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 96/402 (23%), Positives = 178/402 (44%), Gaps = 35/402 (8%)

Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
            L + +K   +   +  +  + + Y  AGK D A  +   M    C  + +++N ++D L
Sbjct: 270 VLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGL 329

Query: 184 CKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
           CKE+KV++A  L + + +   K  V +Y ++          + A  +L +MV  G  P++
Sbjct: 330 CKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDV 389

Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
             Y   +  +   G I+EA      M +R    D +TYT ++  +G +G +  A +V   
Sbjct: 390 YIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKR 449

Query: 303 MVNGGVLPSVATYNAMIQVLCKK------------DSV-----------------ENAIL 333
           M + G  PS  TY+ +I+ L K+            DS+                 E A+ 
Sbjct: 450 MFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVADVWKMMKFETALE 509

Query: 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
           +FE+M+  G  PN  TY  +I GLC  G +  A +    M +    P+   YN L+   C
Sbjct: 510 LFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCCC 569

Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
           + G     + L   M     LP L++ N+L   ++     +   V    L++    G+  
Sbjct: 570 ELGIYGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQC---GYND 626

Query: 454 RKFTFNRVLNGLLLIG-NQGLAKEILRLQSR-CGRLPRQFKL 493
            +  +  +++GLL  G + G ++ +  +++R C   P+ +++
Sbjct: 627 DEVAWKILIDGLLKNGLSDGCSELLGVMEARGCQIHPQTYRM 668



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/369 (22%), Positives = 167/369 (45%), Gaps = 16/369 (4%)

Query: 24  PLTTTSPAPLPPAAADPAALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHA 83
           P ++T  A +     +     +L+L  +    + + L C    +T  +V  + +  +++A
Sbjct: 317 PNSSTYNALIDGLCKERKVQEALLLMES---MIQKGLKCTVPTYTILIVAMLKEGDFDYA 373

Query: 84  LKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAI 143
            + L       Y P   +  ++F HA      +++   + ++   M    + P   T+ +
Sbjct: 374 HRILDQMVSSGYQPD-VYIYTAFIHAFCTRGNIKEAEDMMSM---MFERGVMPDALTYTL 429

Query: 144 IAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN--LFKVFRG 201
           + + Y   G  + A  +   M + GC  S ++++ ++  L KE+  +K  N  L      
Sbjct: 430 VIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPN 489

Query: 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261
            F ADV      A+ W ++K    ALE+ ++M++ G +PN+ TY  ++ G  + G++  A
Sbjct: 490 VFFADV------ADVWKMMK-FETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVA 542

Query: 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321
            + F  M +R        Y ++++    +G    A  +   M+  G LP + + N +   
Sbjct: 543 QKLFDHMNERGVSPSEAIYNSLLNCCCELGIYGDAVRLVGAMMEHGHLPLLESLNVLFCG 602

Query: 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381
           L ++ S E A +VF  ++  GY  +   + ++I GL   G  +   E +G M+   C+ +
Sbjct: 603 LYEEGSKEKAKVVFSNLLQCGYNDDEVAWKILIDGLLKNGLSDGCSELLGVMEARGCQIH 662

Query: 382 VQTYNILIR 390
            QTY +LI 
Sbjct: 663 PQTYRMLIE 671



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 84/155 (54%), Gaps = 3/155 (1%)

Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
           + V +A  VF  M  KG   N  +Y  +I GLC  G ++  +    +M++D+C P V+TY
Sbjct: 18  NDVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTY 77

Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
            +++    ++G     + LF +M    C PN+ TY ++I++M    K ++     ++L E
Sbjct: 78  TVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEE---GRRILDE 134

Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480
           MV++G +P   T+N +++G    G    A+EIL L
Sbjct: 135 MVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDL 169



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 39/184 (21%)

Query: 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF- 199
           FA +A+ +    K + A+++F  M EHGC  ++N++  ++  LCK  ++  A  LF    
Sbjct: 492 FADVADVW-KMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMN 550

Query: 200 -RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
            RG   ++ I YN + N  C +     A+ ++  M++ G  P L + N++  G +  G  
Sbjct: 551 ERGVSPSEAI-YNSLLNCCCELGIYGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSK 609

Query: 259 EEA------------------WRFFLE-----------------MKKRKCEIDVVTYTTI 283
           E+A                  W+  ++                 M+ R C+I   TY  +
Sbjct: 610 EKAKVVFSNLLQCGYNDDEVAWKILIDGLLKNGLSDGCSELLGVMEARGCQIHPQTYRML 669

Query: 284 VHGF 287
           + G 
Sbjct: 670 IEGL 673


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.325    0.139    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,640,443,466
Number of Sequences: 23463169
Number of extensions: 322834310
Number of successful extensions: 1354938
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7856
Number of HSP's successfully gapped in prelim test: 4831
Number of HSP's that attempted gapping in prelim test: 1154342
Number of HSP's gapped (non-prelim): 70350
length of query: 493
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 346
effective length of database: 8,910,109,524
effective search space: 3082897895304
effective search space used: 3082897895304
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 79 (35.0 bits)