BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011137
(493 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 9/129 (6%)
Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE---------IKRARNVFDGMV 304
+ G + EA R + E ++ ++ Y +++ + + R ++F M+
Sbjct: 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI 97
Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
V+P+ AT+ ++ KD E A + ++M G P +Y + G C G+ +
Sbjct: 98 VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDAD 157
Query: 365 RALEFVGRM 373
+A E M
Sbjct: 158 KAYEVDAHM 166
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 9/127 (7%)
Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVL----CKKDSVENAIL-----VFEEMVGK 341
G++ A ++D GV S YN ++ V +S N L +F++M+
Sbjct: 40 GDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD 99
Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
+PN T+ R + E A + V +MK +P +++Y + FC G+ ++
Sbjct: 100 KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA 159
Query: 402 LELFEKM 408
E+ M
Sbjct: 160 YEVDAHM 166
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268
A +++K+M G+ P L +Y L G+ R G ++A+ M
Sbjct: 124 AFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/124 (19%), Positives = 51/124 (41%), Gaps = 9/124 (7%)
Query: 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE---------IKRARNVFDGMV 304
+ G + EA R + E ++ ++ Y +++ + + R ++F +
Sbjct: 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQXI 97
Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
V+P+ AT+ ++ KD E A ++ G P +Y + G C G+ +
Sbjct: 98 VDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCRKGDAD 157
Query: 365 RALE 368
+A E
Sbjct: 158 KAYE 161
>pdb|1HKC|A Chain A, Recombinant Human Hexokinase Type I Complexed With Glucose
And Phosphate
pdb|1QHA|A Chain A, Human Hexokinase Type I Complexed With Atp Analogue
Amp-Pnp
pdb|1QHA|B Chain B, Human Hexokinase Type I Complexed With Atp Analogue
Amp-Pnp
Length = 917
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
D G + G +LFEKM SG+ L L+ + V+ + LL G++ E++ RG
Sbjct: 282 DRGSLNPGKQLFEKMVSGMYLGE------LVRLILVKMAKEGLLFEGRITPELLTRG--- 332
Query: 454 RKFTFNRVXXXXXXXXXXXXAKEILRLQSRCGRLP 488
KF + V AKEIL +R G P
Sbjct: 333 -KFNTSDVSAIEKNKEGLHNAKEIL---TRLGVEP 363
>pdb|1HKB|A Chain A, Crystal Structure Of Recombinant Human Brain Hexokinase
Type I Complexed With Glucose And Glucose-6-Phosphate
pdb|1HKB|B Chain B, Crystal Structure Of Recombinant Human Brain Hexokinase
Type I Complexed With Glucose And Glucose-6-Phosphate
Length = 917
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
D G + G +LFEKM SG+ L L+ + V+ + LL G++ E++ RG
Sbjct: 282 DRGSLNPGKQLFEKMVSGMYLGE------LVRLILVKMAKEGLLFEGRITPELLTRG--- 332
Query: 454 RKFTFNRVXXXXXXXXXXXXAKEILRLQSRCGRLP 488
KF + V AKEIL +R G P
Sbjct: 333 -KFNTSDVSAIEKNKEGLHNAKEIL---TRLGVEP 363
>pdb|1L9L|A Chain A, Granulysin From Human Cytolytic T Lymphocytes
Length = 74
Score = 33.5 bits (75), Expect = 0.31, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 117 RDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKA 154
RDYRT T+V ++K + PTQ++ + A R G++
Sbjct: 2 RDYRTCLTIVQKLKKMVDKPTQRSVSNAATRVCRTGRS 39
>pdb|1BG3|A Chain A, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
pdb|1BG3|B Chain B, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
Length = 918
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
D G + G +LFEKM SG+ + L+ + V+ + LL G++ E++ RG
Sbjct: 282 DRGSLNPGKQLFEKMVSGMYMGE------LVRLILVKMAKEGLLFEGRITPELLTRG--- 332
Query: 454 RKFTFNRVXXXXXXXXXXXXAKEILRLQSRCGRLP 488
KF + V AKEIL +R G P
Sbjct: 333 -KFNTSDVSAIEKDKEGIQNAKEIL---TRLGVEP 363
>pdb|1CZA|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I
Complexed With Glucose, Glucose-6-Phosphate, And Adp
Length = 917
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
DA + G +LFEKM SG+ L L+ + V+ + LL G++ E++ RG
Sbjct: 282 DAYSLNPGKQLFEKMVSGMYLGE------LVRLILVKMAKEGLLFEGRITPELLTRG--- 332
Query: 454 RKFTFNRVXXXXXXXXXXXXAKEILRLQSRCGRLP 488
KF + V AKEIL +R G P
Sbjct: 333 -KFNTSDVSAIEKNKEGLHNAKEIL---TRLGVEP 363
>pdb|1DGK|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I With
Glucose And Adp In The Active Site
Length = 917
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
DA + G +LFEKM SG+ L L+ + V+ + LL G++ E++ RG
Sbjct: 282 DAYSLNPGKQLFEKMVSGMYLGE------LVRLILVKMAKEGLLFEGRITPELLTRG--- 332
Query: 454 RKFTFNRVXXXXXXXXXXXXAKEILRLQSRCGRLP 488
KF + V AKEIL +R G P
Sbjct: 333 -KFNTSDVSAIEKNKEGLHNAKEIL---TRLGVEP 363
>pdb|1UZ2|X Chain X, The Cys121ser Mutant Of Beta-Lactoglobulin
Length = 162
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 58 QTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPT 98
Q+L C SL TP++ D+ +++ ++ ALKAL LS++PT
Sbjct: 115 QSLVCQSLVRTPEVDDEALEK-FDKALKALPMHIRLSFNPT 154
>pdb|2NZT|A Chain A, Crystal Structure Of Human Hexokinase Ii
pdb|2NZT|B Chain B, Crystal Structure Of Human Hexokinase Ii
Length = 902
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450
D G + G +LFEKM SG+ + L+ + V+ ++LL GKL E+++ G
Sbjct: 268 DMGSLNPGKQLFEKMISGMYMGE------LVRLILVKMAKEELLFGGKLSPELLNTG 318
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 16/129 (12%)
Query: 227 LEVLKEMVDRGLNPNLTTYNI--VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
L ++K ++ RG +PN++ + L RAG E A ++ L+ K K T +
Sbjct: 27 LPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVA-KYLLQ-NKAKVNAKAKDDQTPL 84
Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATY--NAMIQVLCKKDSVENAILVFEE----- 337
H +G + + + N P++AT + + + ++ VE + + E+
Sbjct: 85 HCAARIGHTNMVKLLLENNAN----PNLATTAGHTPLHIAAREGHVETVLALLEKEASQA 140
Query: 338 -MVGKGYMP 345
M KG+ P
Sbjct: 141 CMTKKGFTP 149
>pdb|3C4A|A Chain A, Crystal Structure Of Viod Hydroxylase In Complex With Fad
From Chromobacterium Violaceum. Northeast Structural
Genomics Consortium Target Cvr158
Length = 381
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 6/90 (6%)
Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE------MVGKGYMPNSTTYNVVIRGL 357
+ G +V +++ LC +D V A+ FEE + +G+ NS + +
Sbjct: 278 IGHGTTXAVVVAQLLVKALCTEDGVPAALKRFEERALPLVQLFRGHADNSRVWFETVEER 337
Query: 358 CHTGEMERALEFVGRMKDDECEPNVQTYNI 387
H E F R K P N+
Sbjct: 338 XHLSSAEFVQSFDARRKSLPPXPEALAQNL 367
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.140 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,334,017
Number of Sequences: 62578
Number of extensions: 521659
Number of successful extensions: 1422
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1412
Number of HSP's gapped (non-prelim): 20
length of query: 493
length of database: 14,973,337
effective HSP length: 103
effective length of query: 390
effective length of database: 8,527,803
effective search space: 3325843170
effective search space used: 3325843170
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)