Query 011137
Match_columns 493
No_of_seqs 709 out of 3148
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 08:31:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011137.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011137hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2E-62 4.3E-67 496.7 56.9 417 68-491 369-790 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.3E-61 2.9E-66 490.6 52.9 404 81-492 420-849 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.2E-57 2.5E-62 459.6 43.6 394 71-479 89-486 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 4.2E-57 9.1E-62 466.2 43.4 406 70-490 122-625 (857)
5 PLN03081 pentatricopeptide (PP 100.0 2.2E-56 4.9E-61 450.3 43.9 402 66-487 120-560 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 5.5E-55 1.2E-59 450.6 44.7 399 67-481 220-651 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 8.4E-26 1.8E-30 238.6 51.0 385 82-482 514-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 5.3E-25 1.2E-29 232.5 52.5 390 81-486 479-868 (899)
9 PRK11788 tetratricopeptide rep 99.9 2.8E-22 6E-27 190.3 34.8 299 112-416 44-352 (389)
10 PRK11788 tetratricopeptide rep 99.9 4.5E-22 9.7E-27 188.9 35.1 302 145-456 42-354 (389)
11 KOG4626 O-linked N-acetylgluco 99.9 5.3E-21 1.1E-25 173.9 32.2 369 100-484 113-485 (966)
12 TIGR00990 3a0801s09 mitochondr 99.9 2.6E-19 5.6E-24 178.8 47.6 367 107-485 131-572 (615)
13 PRK11447 cellulose synthase su 99.9 2.2E-19 4.7E-24 190.9 49.7 387 80-482 282-738 (1157)
14 PRK15174 Vi polysaccharide exp 99.9 3E-19 6.5E-24 177.8 42.6 321 81-411 56-381 (656)
15 PRK15174 Vi polysaccharide exp 99.9 1.7E-18 3.7E-23 172.3 46.1 327 109-447 48-379 (656)
16 KOG4626 O-linked N-acetylgluco 99.9 8.8E-20 1.9E-24 166.1 31.9 388 81-484 62-451 (966)
17 PRK11447 cellulose synthase su 99.9 6E-18 1.3E-22 180.0 48.5 365 109-484 275-700 (1157)
18 PRK10049 pgaA outer membrane p 99.9 1.5E-17 3.3E-22 169.2 48.1 405 65-484 11-456 (765)
19 TIGR00990 3a0801s09 mitochondr 99.9 1.4E-17 3E-22 166.5 44.6 357 81-449 141-571 (615)
20 PRK10049 pgaA outer membrane p 99.8 6.9E-17 1.5E-21 164.4 42.6 374 99-484 11-422 (765)
21 PRK14574 hmsH outer membrane p 99.8 4.5E-15 9.6E-20 148.5 49.7 398 73-483 40-512 (822)
22 PRK14574 hmsH outer membrane p 99.8 5.8E-15 1.3E-19 147.7 45.0 376 100-484 31-479 (822)
23 PRK09782 bacteriophage N4 rece 99.8 6.7E-14 1.4E-18 143.1 46.2 214 69-301 46-271 (987)
24 KOG4422 Uncharacterized conser 99.8 6.3E-14 1.4E-18 122.9 36.3 380 102-488 115-556 (625)
25 KOG2002 TPR-containing nuclear 99.7 2.5E-14 5.4E-19 137.6 35.6 398 74-483 240-744 (1018)
26 PRK09782 bacteriophage N4 rece 99.7 4.4E-13 9.5E-18 137.2 44.3 353 116-484 355-740 (987)
27 KOG4422 Uncharacterized conser 99.7 1.9E-13 4.2E-18 119.9 35.1 342 100-450 204-591 (625)
28 PRK10747 putative protoheme IX 99.7 1.8E-13 4E-18 128.7 37.0 283 116-410 97-389 (398)
29 TIGR00540 hemY_coli hemY prote 99.7 2.6E-13 5.6E-18 128.5 37.7 298 106-409 85-397 (409)
30 KOG2076 RNA polymerase III tra 99.7 6.7E-13 1.4E-17 127.1 39.5 366 111-483 147-554 (895)
31 TIGR00540 hemY_coli hemY prote 99.7 1.4E-13 3E-18 130.3 32.2 260 214-481 125-396 (409)
32 PRK10747 putative protoheme IX 99.7 3.3E-13 7.1E-18 127.0 33.7 258 184-481 129-387 (398)
33 KOG2003 TPR repeat-containing 99.7 2.1E-13 4.6E-18 120.6 29.8 207 254-470 502-709 (840)
34 PF13429 TPR_15: Tetratricopep 99.7 3E-16 6.4E-21 141.2 12.3 260 144-409 14-275 (280)
35 KOG2002 TPR-containing nuclear 99.7 3.7E-12 7.9E-17 123.0 39.8 390 83-483 146-558 (1018)
36 COG2956 Predicted N-acetylgluc 99.7 5.2E-13 1.1E-17 113.1 29.5 307 62-376 30-347 (389)
37 COG3071 HemY Uncharacterized e 99.7 5E-12 1.1E-16 110.6 36.2 295 107-410 86-389 (400)
38 PF13429 TPR_15: Tetratricopep 99.7 9.1E-16 2E-20 138.0 12.6 262 108-375 13-276 (280)
39 KOG2076 RNA polymerase III tra 99.7 3.1E-12 6.7E-17 122.7 35.8 332 143-482 144-510 (895)
40 KOG1126 DNA-binding cell divis 99.6 1.4E-13 3E-18 127.6 25.0 282 152-450 333-621 (638)
41 KOG0495 HAT repeat protein [RN 99.6 1.4E-11 3E-16 114.1 37.5 376 97-484 473-880 (913)
42 KOG1126 DNA-binding cell divis 99.6 2E-13 4.3E-18 126.7 25.8 285 118-412 334-621 (638)
43 COG2956 Predicted N-acetylgluc 99.6 2.2E-12 4.8E-17 109.4 29.3 289 151-448 48-346 (389)
44 KOG0495 HAT repeat protein [RN 99.6 1.9E-10 4E-15 106.8 42.5 389 84-485 423-847 (913)
45 KOG1155 Anaphase-promoting com 99.6 5.7E-11 1.2E-15 105.8 36.9 162 244-409 332-493 (559)
46 KOG1155 Anaphase-promoting com 99.6 1.9E-11 4E-16 108.8 33.9 200 277-483 330-535 (559)
47 KOG2003 TPR repeat-containing 99.6 1.6E-11 3.5E-16 108.9 31.7 346 80-434 250-711 (840)
48 COG3071 HemY Uncharacterized e 99.6 4.1E-11 9E-16 104.9 31.6 284 151-447 97-388 (400)
49 KOG1915 Cell cycle control pro 99.5 1.6E-09 3.5E-14 96.9 39.1 390 82-485 88-537 (677)
50 KOG0547 Translocase of outer m 99.5 4.4E-10 9.5E-15 100.9 34.3 220 252-483 336-565 (606)
51 KOG1915 Cell cycle control pro 99.5 4.1E-09 8.8E-14 94.5 39.6 351 100-463 171-548 (677)
52 PRK12370 invasion protein regu 99.5 1.1E-10 2.3E-15 115.0 32.8 249 153-411 276-535 (553)
53 PF12569 NARP1: NMDA receptor- 99.5 5.2E-10 1.1E-14 106.4 35.0 296 106-410 7-333 (517)
54 KOG1173 Anaphase-promoting com 99.5 4.4E-10 9.5E-15 102.8 31.6 287 171-467 242-534 (611)
55 PRK12370 invasion protein regu 99.5 3.1E-11 6.7E-16 118.8 26.6 150 258-410 320-469 (553)
56 TIGR02521 type_IV_pilW type IV 99.5 8.5E-11 1.8E-15 103.0 26.1 198 138-338 31-229 (234)
57 KOG0547 Translocase of outer m 99.5 8.8E-10 1.9E-14 99.0 31.5 354 82-449 130-566 (606)
58 TIGR02521 type_IV_pilW type IV 99.4 1.1E-10 2.3E-15 102.4 25.5 198 209-410 33-231 (234)
59 KOG1173 Anaphase-promoting com 99.4 3.7E-10 8E-15 103.2 28.2 286 136-428 242-533 (611)
60 KOG1129 TPR repeat-containing 99.4 3E-11 6.4E-16 102.8 19.7 228 108-340 228-457 (478)
61 PF12569 NARP1: NMDA receptor- 99.4 1E-09 2.2E-14 104.5 31.3 296 140-447 6-332 (517)
62 KOG1156 N-terminal acetyltrans 99.4 1.8E-08 3.9E-13 93.9 37.6 400 71-486 10-470 (700)
63 KOG1129 TPR repeat-containing 99.4 7.3E-11 1.6E-15 100.4 19.9 232 175-411 225-458 (478)
64 KOG4318 Bicoid mRNA stability 99.4 8.6E-11 1.9E-15 112.5 19.5 274 124-432 11-286 (1088)
65 KOG4318 Bicoid mRNA stability 99.3 3.5E-10 7.7E-15 108.5 22.9 246 96-362 18-286 (1088)
66 KOG3785 Uncharacterized conser 99.3 3.2E-08 7E-13 85.6 32.5 387 81-491 36-497 (557)
67 KOG1840 Kinesin light chain [C 99.3 1.7E-09 3.6E-14 101.8 26.4 237 243-482 200-477 (508)
68 KOG2047 mRNA splicing factor [ 99.3 3.5E-07 7.6E-12 85.5 39.8 146 87-236 122-277 (835)
69 PF13041 PPR_2: PPR repeat fam 99.3 5.8E-12 1.2E-16 79.6 6.2 50 205-254 1-50 (50)
70 KOG1174 Anaphase-promoting com 99.3 1.1E-07 2.3E-12 84.2 33.3 269 134-410 228-499 (564)
71 KOG1174 Anaphase-promoting com 99.3 3.6E-08 7.7E-13 87.1 29.9 286 84-377 213-501 (564)
72 cd05804 StaR_like StaR_like; a 99.3 6.8E-08 1.5E-12 90.5 34.3 307 102-410 5-335 (355)
73 PF13041 PPR_2: PPR repeat fam 99.3 1.5E-11 3.3E-16 77.6 6.4 49 380-428 1-49 (50)
74 PRK11189 lipoprotein NlpI; Pro 99.3 1.1E-08 2.3E-13 92.4 27.2 94 210-305 67-160 (296)
75 KOG1840 Kinesin light chain [C 99.3 2.8E-09 6.2E-14 100.3 24.0 235 175-409 201-477 (508)
76 KOG1156 N-terminal acetyltrans 99.3 7E-07 1.5E-11 83.6 38.4 127 349-483 373-510 (700)
77 PRK11189 lipoprotein NlpI; Pro 99.2 1.4E-08 3E-13 91.7 26.8 218 152-377 40-266 (296)
78 KOG4162 Predicted calmodulin-b 99.2 4E-07 8.6E-12 86.9 36.4 377 100-485 320-784 (799)
79 COG3063 PilF Tfp pilus assembl 99.2 2.8E-08 6.2E-13 81.0 24.4 197 141-340 38-235 (250)
80 KOG2047 mRNA splicing factor [ 99.2 8E-07 1.7E-11 83.1 36.3 371 104-488 103-582 (835)
81 COG3063 PilF Tfp pilus assembl 99.2 2.4E-08 5.1E-13 81.5 23.3 196 177-375 39-235 (250)
82 cd05804 StaR_like StaR_like; a 99.2 2E-07 4.3E-12 87.4 32.3 269 138-410 6-292 (355)
83 KOG4340 Uncharacterized conser 99.2 1.3E-07 2.9E-12 80.0 26.7 406 69-492 10-451 (459)
84 KOG2376 Signal recognition par 99.1 1.1E-06 2.4E-11 81.5 33.8 391 69-477 13-513 (652)
85 KOG4340 Uncharacterized conser 99.1 6.4E-08 1.4E-12 81.9 22.6 329 104-447 11-373 (459)
86 PRK04841 transcriptional regul 99.1 7.2E-07 1.6E-11 94.6 36.6 335 147-484 383-760 (903)
87 PF04733 Coatomer_E: Coatomer 99.1 7.1E-09 1.5E-13 92.1 17.8 148 251-409 111-263 (290)
88 KOG1914 mRNA cleavage and poly 99.0 1.7E-05 3.7E-10 73.1 35.1 150 328-482 347-499 (656)
89 KOG4162 Predicted calmodulin-b 99.0 1.2E-05 2.6E-10 77.2 34.1 352 128-487 313-752 (799)
90 PF04733 Coatomer_E: Coatomer 99.0 7.3E-08 1.6E-12 85.7 18.4 250 111-376 9-265 (290)
91 KOG0548 Molecular co-chaperone 99.0 3.3E-06 7.1E-11 77.7 28.6 370 80-467 15-471 (539)
92 KOG1125 TPR repeat-containing 99.0 1.7E-07 3.6E-12 86.6 20.5 254 214-478 292-565 (579)
93 PRK04841 transcriptional regul 99.0 4.4E-06 9.5E-11 88.7 34.5 335 113-450 384-761 (903)
94 KOG2376 Signal recognition par 99.0 2E-05 4.3E-10 73.4 33.5 364 108-484 17-487 (652)
95 KOG3785 Uncharacterized conser 98.9 8.5E-06 1.8E-10 71.0 29.2 201 210-421 288-498 (557)
96 PLN02789 farnesyltranstransfer 98.9 1.4E-06 2.9E-11 78.7 25.8 213 107-324 41-267 (320)
97 PLN02789 farnesyltranstransfer 98.9 2.8E-06 6.1E-11 76.7 27.1 206 149-359 48-267 (320)
98 KOG1070 rRNA processing protei 98.9 1.6E-06 3.4E-11 88.0 26.5 221 83-309 1441-1666(1710)
99 KOG0624 dsRNA-activated protei 98.9 3.8E-05 8.2E-10 66.8 31.6 302 102-411 37-370 (504)
100 KOG0624 dsRNA-activated protei 98.9 3.2E-05 7E-10 67.2 29.6 302 137-449 37-370 (504)
101 KOG1070 rRNA processing protei 98.9 2.4E-06 5.1E-11 86.9 26.2 227 241-474 1457-1690(1710)
102 KOG0548 Molecular co-chaperone 98.8 1.9E-05 4.2E-10 72.8 29.4 363 111-485 10-456 (539)
103 KOG1125 TPR repeat-containing 98.8 8.4E-07 1.8E-11 82.2 20.5 249 181-435 293-560 (579)
104 KOG0985 Vesicle coat protein c 98.8 0.00012 2.5E-09 72.7 35.5 244 206-484 1103-1370(1666)
105 KOG3081 Vesicle coat complex C 98.8 5.9E-06 1.3E-10 69.2 22.7 158 229-397 95-256 (299)
106 KOG0985 Vesicle coat protein c 98.8 8.6E-05 1.9E-09 73.6 33.8 321 100-479 981-1303(1666)
107 KOG1128 Uncharacterized conser 98.8 8.4E-07 1.8E-11 84.3 19.7 205 210-435 401-605 (777)
108 PRK14720 transcript cleavage f 98.8 4.8E-06 1E-10 83.8 26.2 239 136-428 29-268 (906)
109 KOG3616 Selective LIM binding 98.8 6.9E-06 1.5E-10 78.3 25.4 110 248-370 738-847 (1636)
110 KOG1128 Uncharacterized conser 98.8 4.5E-06 9.7E-11 79.6 24.1 288 86-393 325-634 (777)
111 TIGR03302 OM_YfiO outer membra 98.8 2.4E-06 5.2E-11 74.8 20.9 59 283-341 172-232 (235)
112 TIGR03302 OM_YfiO outer membra 98.7 2.4E-06 5.1E-11 74.9 20.2 60 317-376 171-232 (235)
113 KOG3617 WD40 and TPR repeat-co 98.7 8E-05 1.7E-09 72.2 31.0 209 102-336 756-991 (1416)
114 COG5010 TadD Flp pilus assembl 98.7 3.1E-06 6.7E-11 70.9 18.7 158 142-302 70-227 (257)
115 KOG3617 WD40 and TPR repeat-co 98.7 2E-05 4.2E-10 76.2 25.6 241 101-374 724-994 (1416)
116 PRK10370 formate-dependent nit 98.7 4.9E-06 1.1E-10 69.9 19.5 119 186-306 52-173 (198)
117 PRK10370 formate-dependent nit 98.7 5.7E-06 1.2E-10 69.5 19.6 150 110-273 23-175 (198)
118 COG5010 TadD Flp pilus assembl 98.7 6.4E-06 1.4E-10 69.1 19.1 164 172-339 66-229 (257)
119 PF12854 PPR_1: PPR repeat 98.7 3.5E-08 7.5E-13 55.8 4.1 32 237-268 2-33 (34)
120 KOG1127 TPR repeat-containing 98.7 9.3E-05 2E-09 73.3 29.5 384 82-479 473-908 (1238)
121 PF12854 PPR_1: PPR repeat 98.7 4.1E-08 9E-13 55.4 4.3 33 449-481 1-33 (34)
122 PRK14720 transcript cleavage f 98.7 1.5E-05 3.1E-10 80.4 24.7 171 100-306 28-198 (906)
123 PRK15179 Vi polysaccharide bio 98.6 2.9E-05 6.2E-10 77.5 26.1 148 169-319 82-229 (694)
124 KOG3060 Uncharacterized conser 98.6 4.2E-05 9.1E-10 63.8 22.2 187 152-341 26-220 (289)
125 KOG3616 Selective LIM binding 98.6 4E-05 8.7E-10 73.3 24.9 343 73-477 537-904 (1636)
126 PRK15179 Vi polysaccharide bio 98.6 1.2E-05 2.6E-10 80.1 21.8 214 103-325 49-268 (694)
127 COG4783 Putative Zn-dependent 98.6 0.00012 2.5E-09 67.2 25.8 117 254-374 318-435 (484)
128 KOG3081 Vesicle coat complex C 98.6 3.8E-05 8.3E-10 64.5 20.5 249 111-376 16-271 (299)
129 PRK15359 type III secretion sy 98.6 3.4E-06 7.3E-11 67.0 13.9 95 141-236 27-121 (144)
130 KOG3060 Uncharacterized conser 98.5 0.00014 2.9E-09 60.8 21.6 163 106-271 55-220 (289)
131 PRK15359 type III secretion sy 98.5 7.2E-06 1.6E-10 65.1 14.1 95 176-271 27-121 (144)
132 COG4783 Putative Zn-dependent 98.5 9.7E-05 2.1E-09 67.7 22.5 239 74-341 210-454 (484)
133 KOG2053 Mitochondrial inherita 98.4 0.0022 4.8E-08 63.3 41.3 219 82-307 24-256 (932)
134 KOG1127 TPR repeat-containing 98.4 0.00044 9.6E-09 68.8 26.7 335 138-483 492-878 (1238)
135 TIGR02552 LcrH_SycD type III s 98.3 2.7E-05 5.9E-10 61.4 14.5 94 210-305 20-113 (135)
136 TIGR02552 LcrH_SycD type III s 98.3 2.6E-05 5.7E-10 61.5 14.3 97 139-236 18-114 (135)
137 KOG1914 mRNA cleavage and poly 98.3 0.0031 6.6E-08 58.8 36.9 185 259-448 310-500 (656)
138 PF09976 TPR_21: Tetratricopep 98.2 7.9E-05 1.7E-09 59.4 14.9 115 186-302 24-143 (145)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 4.1E-05 8.9E-10 70.7 14.8 122 107-233 173-294 (395)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 7.4E-05 1.6E-09 69.0 15.9 89 248-338 206-294 (395)
141 KOG2053 Mitochondrial inherita 98.2 0.0084 1.8E-07 59.5 38.1 223 114-342 20-256 (932)
142 PF09976 TPR_21: Tetratricopep 98.2 0.00014 3.1E-09 57.9 15.6 125 280-408 15-144 (145)
143 TIGR00756 PPR pentatricopeptid 98.1 4.6E-06 1E-10 47.9 4.2 33 209-241 2-34 (35)
144 PF13812 PPR_3: Pentatricopept 98.1 8.5E-06 1.8E-10 46.3 4.3 33 208-240 2-34 (34)
145 TIGR00756 PPR pentatricopeptid 98.0 1.1E-05 2.3E-10 46.3 4.2 32 315-346 3-34 (35)
146 PF10037 MRP-S27: Mitochondria 98.0 0.00014 3.1E-09 67.5 13.1 124 272-395 61-186 (429)
147 PRK10866 outer membrane biogen 98.0 0.006 1.3E-07 53.2 22.5 179 212-409 37-239 (243)
148 cd00189 TPR Tetratricopeptide 98.0 0.00016 3.5E-09 52.6 10.9 87 146-233 8-94 (100)
149 COG3898 Uncharacterized membra 97.9 0.014 3E-07 52.4 28.4 320 74-449 60-392 (531)
150 PF13812 PPR_3: Pentatricopept 97.9 1.7E-05 3.8E-10 45.0 4.0 28 315-342 4-31 (34)
151 PF10037 MRP-S27: Mitochondria 97.9 0.0002 4.3E-09 66.5 12.9 126 200-325 59-186 (429)
152 cd00189 TPR Tetratricopeptide 97.9 0.00018 3.9E-09 52.3 10.6 93 211-305 4-96 (100)
153 COG3898 Uncharacterized membra 97.9 0.016 3.4E-07 52.1 35.0 96 102-201 117-216 (531)
154 KOG0550 Molecular chaperone (D 97.9 0.016 3.4E-07 52.5 23.5 158 250-411 177-350 (486)
155 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00041 8.8E-09 53.1 12.6 95 142-236 6-105 (119)
156 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00049 1.1E-08 52.7 13.0 96 211-306 6-105 (119)
157 PRK15363 pathogenicity island 97.9 0.00036 7.9E-09 54.7 11.8 87 182-269 44-130 (157)
158 PF04840 Vps16_C: Vps16, C-ter 97.9 0.02 4.4E-07 51.9 24.4 110 279-408 179-288 (319)
159 PRK10866 outer membrane biogen 97.9 0.0056 1.2E-07 53.3 20.1 57 317-373 180-238 (243)
160 PRK15363 pathogenicity island 97.8 0.00076 1.7E-08 52.9 12.5 99 137-236 34-132 (157)
161 PF01535 PPR: PPR repeat; Int 97.8 3.4E-05 7.3E-10 42.7 3.6 29 209-237 2-30 (31)
162 PF05843 Suf: Suppressor of fo 97.8 0.00064 1.4E-08 60.8 13.5 130 140-271 3-136 (280)
163 PF14938 SNAP: Soluble NSF att 97.8 0.002 4.3E-08 57.9 16.7 214 188-447 30-264 (282)
164 PF08579 RPM2: Mitochondrial r 97.8 0.00065 1.4E-08 49.3 10.5 81 105-185 27-116 (120)
165 PF05843 Suf: Suppressor of fo 97.7 0.00083 1.8E-08 60.1 13.6 131 104-236 2-136 (280)
166 PF08579 RPM2: Mitochondrial r 97.7 0.0005 1.1E-08 49.9 9.6 25 332-356 89-113 (120)
167 CHL00033 ycf3 photosystem I as 97.7 0.0006 1.3E-08 56.0 11.8 80 139-218 36-117 (168)
168 PLN03088 SGT1, suppressor of 97.7 0.0011 2.3E-08 61.7 14.6 90 146-236 10-99 (356)
169 KOG1130 Predicted G-alpha GTPa 97.7 0.00079 1.7E-08 60.4 12.8 133 278-410 196-343 (639)
170 PF12895 Apc3: Anaphase-promot 97.7 6.5E-05 1.4E-09 53.4 5.1 18 179-196 31-48 (84)
171 PRK02603 photosystem I assembl 97.7 0.0025 5.5E-08 52.5 14.8 86 104-190 36-123 (172)
172 PRK02603 photosystem I assembl 97.7 0.0031 6.6E-08 52.0 15.1 117 137-257 34-166 (172)
173 PF14938 SNAP: Soluble NSF att 97.7 0.012 2.6E-07 52.9 20.0 80 178-271 99-184 (282)
174 PF01535 PPR: PPR repeat; Int 97.7 6.4E-05 1.4E-09 41.6 3.4 29 384-412 2-30 (31)
175 PF12895 Apc3: Anaphase-promot 97.7 9.4E-05 2E-09 52.6 5.1 47 221-267 3-50 (84)
176 PF06239 ECSIT: Evolutionarily 97.7 0.002 4.4E-08 53.1 13.2 104 345-470 45-153 (228)
177 PLN03088 SGT1, suppressor of 97.6 0.0017 3.7E-08 60.3 14.4 93 180-273 9-101 (356)
178 KOG0553 TPR repeat-containing 97.6 0.0009 2E-08 57.7 11.0 97 286-386 90-186 (304)
179 KOG2041 WD40 repeat protein [G 97.6 0.08 1.7E-06 51.4 26.5 122 100-232 689-821 (1189)
180 KOG1130 Predicted G-alpha GTPa 97.6 0.0006 1.3E-08 61.1 9.9 132 349-483 197-343 (639)
181 PF12688 TPR_5: Tetratrico pep 97.6 0.0079 1.7E-07 45.5 14.5 94 212-305 6-103 (120)
182 PF12688 TPR_5: Tetratrico pep 97.6 0.0047 1E-07 46.7 13.1 87 147-233 10-101 (120)
183 KOG2041 WD40 repeat protein [G 97.5 0.014 3E-07 56.4 18.6 203 136-374 690-905 (1189)
184 COG5107 RNA14 Pre-mRNA 3'-end 97.5 0.075 1.6E-06 48.9 33.4 127 348-481 398-528 (660)
185 CHL00033 ycf3 photosystem I as 97.5 0.0046 9.9E-08 50.7 13.7 91 314-405 37-136 (168)
186 PRK10153 DNA-binding transcrip 97.5 0.011 2.3E-07 57.6 18.0 62 313-376 421-482 (517)
187 PF13525 YfiO: Outer membrane 97.5 0.014 3E-07 49.5 16.7 49 353-401 147-197 (203)
188 PRK10153 DNA-binding transcrip 97.4 0.016 3.5E-07 56.4 18.6 63 242-306 420-482 (517)
189 PF06239 ECSIT: Evolutionarily 97.4 0.0035 7.6E-08 51.7 11.9 84 311-394 46-150 (228)
190 KOG2796 Uncharacterized conser 97.4 0.013 2.8E-07 49.6 15.2 130 107-236 181-315 (366)
191 KOG0553 TPR repeat-containing 97.4 0.0027 5.9E-08 54.9 11.4 86 218-305 92-177 (304)
192 COG4700 Uncharacterized protei 97.4 0.048 1E-06 43.8 18.2 123 309-435 86-211 (251)
193 COG4235 Cytochrome c biogenesi 97.4 0.012 2.5E-07 51.3 14.8 128 328-463 138-268 (287)
194 PF13525 YfiO: Outer membrane 97.4 0.027 5.8E-07 47.8 17.1 67 139-205 6-74 (203)
195 KOG1538 Uncharacterized conser 97.4 0.022 4.8E-07 54.5 17.4 103 138-268 556-658 (1081)
196 PF14559 TPR_19: Tetratricopep 97.3 0.0008 1.7E-08 45.4 5.9 48 117-165 5-52 (68)
197 KOG0550 Molecular chaperone (D 97.3 0.13 2.9E-06 46.8 25.5 157 215-376 177-350 (486)
198 COG4235 Cytochrome c biogenesi 97.3 0.019 4.2E-07 50.0 15.2 102 203-306 152-256 (287)
199 PF13432 TPR_16: Tetratricopep 97.3 0.001 2.2E-08 44.4 6.1 52 183-234 7-58 (65)
200 PF14559 TPR_19: Tetratricopep 97.3 0.0013 2.8E-08 44.4 6.6 52 359-411 3-54 (68)
201 COG4700 Uncharacterized protei 97.3 0.071 1.5E-06 42.9 17.9 134 274-409 86-220 (251)
202 PF13432 TPR_16: Tetratricopep 97.2 0.0016 3.5E-08 43.4 6.1 55 111-166 5-59 (65)
203 PRK10803 tol-pal system protei 97.1 0.014 3E-07 51.4 13.1 94 141-236 146-246 (263)
204 PF13414 TPR_11: TPR repeat; P 97.1 0.002 4.4E-08 43.6 6.3 63 347-410 3-66 (69)
205 PF13414 TPR_11: TPR repeat; P 97.1 0.0013 2.9E-08 44.5 5.4 58 210-268 6-64 (69)
206 PF13281 DUF4071: Domain of un 97.1 0.23 4.9E-06 45.7 20.6 31 454-484 304-334 (374)
207 PF04840 Vps16_C: Vps16, C-ter 97.1 0.23 5E-06 45.1 27.2 81 317-407 182-262 (319)
208 KOG2796 Uncharacterized conser 97.0 0.17 3.7E-06 43.2 23.2 132 279-411 179-315 (366)
209 PF03704 BTAD: Bacterial trans 97.0 0.029 6.3E-07 44.7 13.1 70 349-419 64-138 (146)
210 PRK10803 tol-pal system protei 97.0 0.014 3.1E-07 51.3 12.0 88 323-410 154-245 (263)
211 KOG1538 Uncharacterized conser 96.9 0.093 2E-06 50.5 16.9 54 278-340 748-801 (1081)
212 PRK15331 chaperone protein Sic 96.7 0.19 4.2E-06 39.9 14.8 93 143-236 42-134 (165)
213 COG5107 RNA14 Pre-mRNA 3'-end 96.6 0.58 1.2E-05 43.4 25.1 91 383-479 398-490 (660)
214 PF13281 DUF4071: Domain of un 96.6 0.57 1.2E-05 43.2 21.1 33 379-411 302-334 (374)
215 PF03704 BTAD: Bacterial trans 96.6 0.017 3.6E-07 46.1 8.7 68 177-244 66-138 (146)
216 PF13371 TPR_9: Tetratricopept 96.6 0.015 3.3E-07 39.7 7.4 55 356-411 4-58 (73)
217 PF13371 TPR_9: Tetratricopept 96.6 0.0098 2.1E-07 40.7 6.3 53 183-235 5-57 (73)
218 PF10300 DUF3808: Protein of u 96.6 0.18 3.8E-06 48.9 16.9 162 176-340 191-375 (468)
219 KOG2280 Vacuolar assembly/sort 96.5 0.96 2.1E-05 44.8 32.9 350 102-478 382-793 (829)
220 PRK15331 chaperone protein Sic 96.5 0.096 2.1E-06 41.6 12.1 88 216-305 46-133 (165)
221 KOG1585 Protein required for f 96.5 0.26 5.5E-06 41.7 14.9 212 97-334 25-249 (308)
222 PF04053 Coatomer_WDAD: Coatom 96.5 0.13 2.8E-06 49.1 15.2 168 66-267 260-427 (443)
223 PF12921 ATP13: Mitochondrial 96.4 0.065 1.4E-06 41.0 10.5 50 377-426 47-97 (126)
224 COG4105 ComL DNA uptake lipopr 96.4 0.52 1.1E-05 40.4 19.9 58 353-410 173-232 (254)
225 PF13424 TPR_12: Tetratricopep 96.3 0.0098 2.1E-07 41.3 5.3 61 349-409 7-73 (78)
226 PF13424 TPR_12: Tetratricopep 96.3 0.014 3E-07 40.6 5.7 24 210-233 8-31 (78)
227 PF08631 SPO22: Meiosis protei 96.3 0.8 1.7E-05 41.1 25.7 123 114-236 4-150 (278)
228 PF08631 SPO22: Meiosis protei 96.3 0.81 1.8E-05 41.0 25.6 101 243-346 85-191 (278)
229 PF12921 ATP13: Mitochondrial 96.2 0.16 3.5E-06 38.9 11.6 49 413-464 48-97 (126)
230 PF04053 Coatomer_WDAD: Coatom 96.1 0.11 2.4E-06 49.4 12.7 25 242-266 347-371 (443)
231 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.066 1.4E-06 49.9 10.6 64 346-411 74-141 (453)
232 PF09205 DUF1955: Domain of un 96.1 0.34 7.3E-06 36.7 12.2 139 324-487 14-152 (161)
233 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.085 1.8E-06 49.2 11.0 66 135-202 72-141 (453)
234 KOG1920 IkappaB kinase complex 96.1 2.1 4.5E-05 44.9 21.3 53 389-447 972-1026(1265)
235 PF10300 DUF3808: Protein of u 96.0 0.61 1.3E-05 45.2 17.4 164 244-410 190-375 (468)
236 KOG3941 Intermediate in Toll s 96.0 0.19 4.1E-06 43.4 11.9 116 346-483 66-187 (406)
237 COG3118 Thioredoxin domain-con 95.9 0.56 1.2E-05 41.1 14.5 140 148-291 144-286 (304)
238 COG4105 ComL DNA uptake lipopr 95.9 1 2.2E-05 38.7 20.8 54 149-202 45-100 (254)
239 KOG4555 TPR repeat-containing 95.7 0.37 7.9E-06 36.4 10.8 91 182-272 52-145 (175)
240 COG3118 Thioredoxin domain-con 95.7 1.4 3E-05 38.7 17.1 143 181-326 142-286 (304)
241 KOG4555 TPR repeat-containing 95.6 0.23 5E-06 37.4 9.6 91 356-450 52-145 (175)
242 KOG0543 FKBP-type peptidyl-pro 95.6 0.2 4.4E-06 45.7 11.2 61 244-305 259-319 (397)
243 PF09205 DUF1955: Domain of un 95.6 0.72 1.6E-05 35.0 15.9 140 148-308 12-151 (161)
244 KOG2610 Uncharacterized conser 95.6 0.9 1.9E-05 40.5 14.6 152 149-302 114-272 (491)
245 smart00299 CLH Clathrin heavy 95.6 0.87 1.9E-05 35.8 15.2 39 250-289 15-53 (140)
246 KOG0543 FKBP-type peptidyl-pro 95.5 0.32 7E-06 44.4 11.9 139 145-305 215-354 (397)
247 PF13512 TPR_18: Tetratricopep 95.4 0.54 1.2E-05 36.5 11.5 81 105-185 12-94 (142)
248 COG0457 NrfG FOG: TPR repeat [ 95.4 1.5 3.2E-05 37.6 28.7 94 174-268 60-156 (291)
249 KOG2610 Uncharacterized conser 95.4 0.49 1.1E-05 42.0 12.5 154 114-268 114-273 (491)
250 COG1729 Uncharacterized protei 95.4 0.29 6.3E-06 42.3 11.0 98 106-204 145-246 (262)
251 KOG2280 Vacuolar assembly/sort 95.3 3.4 7.3E-05 41.2 30.2 321 148-482 399-771 (829)
252 KOG3941 Intermediate in Toll s 95.3 0.16 3.5E-06 43.8 8.9 88 206-293 66-174 (406)
253 KOG2114 Vacuolar assembly/sort 95.1 0.51 1.1E-05 47.2 12.9 250 138-411 334-590 (933)
254 COG0457 NrfG FOG: TPR repeat [ 95.1 1.9 4.2E-05 36.9 28.9 168 207-375 59-230 (291)
255 COG1729 Uncharacterized protei 95.0 0.77 1.7E-05 39.8 12.5 97 314-411 144-244 (262)
256 PRK11906 transcriptional regul 95.0 2.7 5.9E-05 39.7 16.7 161 104-266 252-431 (458)
257 KOG1941 Acetylcholine receptor 95.0 1.2 2.7E-05 40.1 13.7 156 148-303 16-188 (518)
258 smart00299 CLH Clathrin heavy 94.9 1.4 3.1E-05 34.6 15.1 9 105-113 43-51 (140)
259 KOG1941 Acetylcholine receptor 94.8 0.98 2.1E-05 40.7 12.7 163 314-479 85-270 (518)
260 PRK11906 transcriptional regul 94.8 3.7 8E-05 38.8 16.9 115 189-305 274-400 (458)
261 KOG2114 Vacuolar assembly/sort 94.7 2.5 5.3E-05 42.7 16.3 180 209-409 336-517 (933)
262 PF13428 TPR_14: Tetratricopep 94.6 0.086 1.9E-06 31.7 4.2 25 142-166 5-29 (44)
263 KOG1920 IkappaB kinase complex 94.5 7.5 0.00016 41.1 22.5 32 452-483 1181-1212(1265)
264 COG3629 DnrI DNA-binding trans 94.5 0.42 9.2E-06 42.0 9.9 78 174-251 154-236 (280)
265 PF13170 DUF4003: Protein of u 94.5 3.5 7.5E-05 37.2 20.4 133 293-427 78-227 (297)
266 PF13428 TPR_14: Tetratricopep 94.4 0.13 2.9E-06 30.8 4.9 37 176-212 4-40 (44)
267 PF07079 DUF1347: Protein of u 94.3 4.8 0.0001 37.8 39.0 358 113-481 89-521 (549)
268 PF13512 TPR_18: Tetratricopep 94.2 2.1 4.5E-05 33.4 12.3 57 251-307 19-77 (142)
269 KOG1258 mRNA processing protei 94.1 6.1 0.00013 38.4 32.1 357 101-469 77-489 (577)
270 KOG1585 Protein required for f 93.8 3.8 8.3E-05 35.0 18.4 55 350-405 193-250 (308)
271 PF10602 RPN7: 26S proteasome 93.6 0.9 2E-05 37.4 9.8 60 349-408 38-99 (177)
272 PF10602 RPN7: 26S proteasome 93.6 1.2 2.6E-05 36.7 10.4 62 209-270 38-101 (177)
273 COG3629 DnrI DNA-binding trans 93.4 1 2.2E-05 39.7 10.2 77 209-286 155-236 (280)
274 PF07035 Mic1: Colon cancer-as 93.3 3.6 7.8E-05 33.2 15.4 25 130-154 21-45 (167)
275 COG4649 Uncharacterized protei 93.3 3.5 7.7E-05 33.1 14.2 124 288-411 69-196 (221)
276 PF09613 HrpB1_HrpK: Bacterial 93.2 3.5 7.7E-05 32.8 12.7 19 217-235 54-72 (160)
277 PF13170 DUF4003: Protein of u 93.2 6.3 0.00014 35.5 19.9 134 328-463 78-225 (297)
278 PF04184 ST7: ST7 protein; In 93.1 8.2 0.00018 36.8 17.7 57 318-374 265-322 (539)
279 PF02259 FAT: FAT domain; Int 93.1 7.6 0.00016 36.2 22.2 65 276-340 145-212 (352)
280 COG4649 Uncharacterized protei 93.0 4 8.6E-05 32.9 14.8 133 103-236 59-196 (221)
281 PF07035 Mic1: Colon cancer-as 93.0 4.1 8.8E-05 32.9 15.8 130 228-373 15-146 (167)
282 PF02284 COX5A: Cytochrome c o 93.0 2 4.3E-05 31.0 9.1 59 156-214 28-86 (108)
283 KOG1258 mRNA processing protei 92.9 10 0.00022 37.0 27.9 133 102-236 44-180 (577)
284 PF07079 DUF1347: Protein of u 92.8 8.7 0.00019 36.1 30.3 138 112-254 15-179 (549)
285 PF13176 TPR_7: Tetratricopept 92.5 0.28 6.1E-06 27.8 3.8 26 384-409 1-26 (36)
286 KOG1550 Extracellular protein 92.4 13 0.00028 37.2 25.6 277 189-485 228-539 (552)
287 PF07575 Nucleopor_Nup85: Nup8 92.0 15 0.00032 37.0 18.3 29 100-129 146-174 (566)
288 PF13176 TPR_7: Tetratricopept 92.0 0.37 8.1E-06 27.3 3.9 23 210-232 2-24 (36)
289 KOG0276 Vesicle coat complex C 91.7 2.2 4.9E-05 41.3 10.5 72 324-410 649-720 (794)
290 PF00637 Clathrin: Region in C 91.5 0.014 3.1E-07 46.3 -3.4 84 318-408 13-96 (143)
291 PF13929 mRNA_stabil: mRNA sta 91.4 7.3 0.00016 34.4 12.6 116 83-198 144-263 (292)
292 PF11207 DUF2989: Protein of u 91.4 5.5 0.00012 33.1 11.3 78 114-193 118-198 (203)
293 cd00923 Cyt_c_Oxidase_Va Cytoc 91.3 3 6.5E-05 29.7 8.3 47 439-485 26-73 (103)
294 PF13431 TPR_17: Tetratricopep 90.7 0.33 7.1E-06 27.1 2.7 24 379-402 10-33 (34)
295 PF04184 ST7: ST7 protein; In 90.7 16 0.00035 35.0 21.1 56 213-268 265-321 (539)
296 PF00515 TPR_1: Tetratricopept 90.5 0.69 1.5E-05 25.6 4.0 27 384-410 3-29 (34)
297 PF13431 TPR_17: Tetratricopep 90.5 0.22 4.8E-06 27.8 1.8 21 206-226 12-32 (34)
298 KOG4570 Uncharacterized conser 90.5 5.1 0.00011 35.6 10.7 49 327-375 115-163 (418)
299 PF04097 Nic96: Nup93/Nic96; 90.5 22 0.00047 36.1 23.8 230 249-489 265-536 (613)
300 COG4785 NlpI Lipoprotein NlpI, 90.2 10 0.00022 31.9 17.0 27 456-482 238-264 (297)
301 KOG4570 Uncharacterized conser 90.1 3.1 6.6E-05 36.9 9.1 102 168-271 59-164 (418)
302 PF11207 DUF2989: Protein of u 89.9 3.9 8.5E-05 34.0 9.2 71 330-401 124-197 (203)
303 PF02284 COX5A: Cytochrome c o 89.5 4.4 9.6E-05 29.3 8.0 39 441-479 31-69 (108)
304 COG4785 NlpI Lipoprotein NlpI, 89.5 12 0.00025 31.6 18.0 28 314-341 239-266 (297)
305 KOG1550 Extracellular protein 89.4 25 0.00054 35.2 25.7 16 151-166 262-277 (552)
306 PF07719 TPR_2: Tetratricopept 89.3 0.98 2.1E-05 24.8 4.0 27 384-410 3-29 (34)
307 cd00923 Cyt_c_Oxidase_Va Cytoc 89.0 6.6 0.00014 28.1 8.5 43 158-200 27-69 (103)
308 KOG0276 Vesicle coat complex C 89.0 13 0.00028 36.4 13.0 150 150-338 598-747 (794)
309 PF07163 Pex26: Pex26 protein; 88.1 16 0.00035 32.0 11.9 87 110-196 90-181 (309)
310 KOG1464 COP9 signalosome, subu 88.0 17 0.00037 31.6 17.3 48 152-199 41-91 (440)
311 KOG0890 Protein kinase of the 87.5 64 0.0014 37.6 26.7 316 79-411 1395-1731(2382)
312 PRK09687 putative lyase; Provi 87.3 21 0.00047 31.9 28.8 17 346-362 205-221 (280)
313 COG1747 Uncharacterized N-term 87.1 30 0.00065 33.3 22.6 179 100-286 63-248 (711)
314 PF00515 TPR_1: Tetratricopept 87.0 1.7 3.8E-05 23.9 4.1 26 280-305 4-29 (34)
315 PF09613 HrpB1_HrpK: Bacterial 87.0 14 0.00031 29.5 13.9 19 183-201 54-72 (160)
316 PRK15180 Vi polysaccharide bio 86.9 6.8 0.00015 37.0 9.7 121 148-271 299-420 (831)
317 PF04097 Nic96: Nup93/Nic96; 86.8 39 0.00084 34.4 18.4 38 182-219 120-157 (613)
318 COG3947 Response regulator con 86.8 22 0.00047 31.5 15.4 70 210-280 282-356 (361)
319 PF13374 TPR_10: Tetratricopep 86.6 1.7 3.7E-05 25.2 4.1 28 383-410 3-30 (42)
320 KOG4234 TPR repeat-containing 86.5 11 0.00025 31.2 9.6 55 182-236 104-163 (271)
321 KOG4234 TPR repeat-containing 86.4 8.6 0.00019 31.8 8.9 90 146-236 103-197 (271)
322 KOG4507 Uncharacterized conser 86.0 4.9 0.00011 38.9 8.4 131 190-322 590-720 (886)
323 KOG3364 Membrane protein invol 85.6 12 0.00025 28.9 8.6 69 415-484 30-100 (149)
324 PF13374 TPR_10: Tetratricopep 85.3 2.5 5.4E-05 24.5 4.4 25 244-268 4-28 (42)
325 COG4455 ImpE Protein of avirul 85.0 7.3 0.00016 32.7 8.0 76 315-391 4-81 (273)
326 COG2909 MalT ATP-dependent tra 85.0 52 0.0011 34.2 27.7 222 253-480 426-684 (894)
327 PF00637 Clathrin: Region in C 84.2 0.53 1.1E-05 37.2 1.3 83 283-372 13-95 (143)
328 PRK15180 Vi polysaccharide bio 84.0 40 0.00088 32.2 27.2 115 86-205 309-423 (831)
329 TIGR02561 HrpB1_HrpK type III 83.5 20 0.00043 28.2 12.2 51 186-236 23-73 (153)
330 PF13181 TPR_8: Tetratricopept 83.5 3.2 7E-05 22.7 4.1 28 383-410 2-29 (34)
331 PF07163 Pex26: Pex26 protein; 83.5 19 0.00041 31.7 10.1 89 212-300 88-181 (309)
332 COG3947 Response regulator con 83.4 32 0.0007 30.5 16.4 71 244-315 281-356 (361)
333 COG4455 ImpE Protein of avirul 83.1 12 0.00025 31.6 8.4 76 280-356 4-81 (273)
334 COG2909 MalT ATP-dependent tra 82.8 64 0.0014 33.5 27.7 224 184-407 426-684 (894)
335 PF07719 TPR_2: Tetratricopept 82.8 4.6 0.0001 22.0 4.6 29 456-484 2-30 (34)
336 TIGR03504 FimV_Cterm FimV C-te 82.7 2.8 6E-05 25.1 3.6 27 460-486 4-30 (44)
337 COG1747 Uncharacterized N-term 82.3 50 0.0011 32.0 24.9 179 136-321 64-248 (711)
338 PRK09687 putative lyase; Provi 82.3 37 0.0008 30.5 27.2 202 241-466 67-278 (280)
339 KOG0403 Neoplastic transformat 81.2 50 0.0011 31.3 16.3 74 386-467 513-586 (645)
340 KOG4648 Uncharacterized conser 80.8 5.7 0.00012 35.7 6.3 90 285-376 105-194 (536)
341 KOG0890 Protein kinase of the 80.6 1.3E+02 0.0027 35.5 26.2 320 108-449 1388-1731(2382)
342 PF06552 TOM20_plant: Plant sp 80.5 24 0.00052 28.9 9.2 40 224-271 97-136 (186)
343 PF13181 TPR_8: Tetratricopept 80.3 5.1 0.00011 21.9 4.1 27 279-305 3-29 (34)
344 KOG4648 Uncharacterized conser 80.1 7 0.00015 35.2 6.6 46 148-194 107-152 (536)
345 TIGR03504 FimV_Cterm FimV C-te 79.8 4.5 9.7E-05 24.2 3.8 23 388-410 5-27 (44)
346 TIGR02561 HrpB1_HrpK type III 79.4 29 0.00062 27.4 12.8 19 183-201 54-72 (153)
347 COG2976 Uncharacterized protei 79.4 35 0.00076 28.3 15.1 89 319-412 96-189 (207)
348 TIGR02508 type_III_yscG type I 79.3 21 0.00046 25.8 8.2 80 81-168 19-98 (115)
349 KOG2066 Vacuolar assembly/sort 79.1 80 0.0017 32.3 26.9 22 248-269 511-532 (846)
350 PF08424 NRDE-2: NRDE-2, neces 78.8 54 0.0012 30.2 16.4 118 224-343 48-185 (321)
351 PF07721 TPR_4: Tetratricopept 78.7 3.3 7E-05 21.3 2.7 20 387-406 6-25 (26)
352 PF13174 TPR_6: Tetratricopept 78.1 3 6.4E-05 22.6 2.7 19 147-165 9-27 (33)
353 KOG2063 Vacuolar assembly/sort 77.9 98 0.0021 32.7 17.4 116 209-324 506-638 (877)
354 PRK13342 recombination factor 77.5 69 0.0015 30.7 19.2 31 256-286 244-274 (413)
355 PF13174 TPR_6: Tetratricopept 77.5 5.3 0.00012 21.5 3.6 27 458-484 3-29 (33)
356 PF13929 mRNA_stabil: mRNA sta 77.2 53 0.0012 29.3 18.8 57 311-367 201-258 (292)
357 PF02259 FAT: FAT domain; Int 77.1 62 0.0013 30.0 25.1 67 240-306 144-213 (352)
358 KOG4077 Cytochrome c oxidase, 76.7 14 0.0003 28.0 6.3 46 121-166 67-112 (149)
359 COG5159 RPN6 26S proteasome re 76.1 56 0.0012 29.0 14.7 20 317-336 130-149 (421)
360 KOG1586 Protein required for f 75.8 51 0.0011 28.3 20.7 29 353-381 160-188 (288)
361 PF11846 DUF3366: Domain of un 75.7 20 0.00042 30.0 8.1 31 452-482 141-171 (193)
362 PF10579 Rapsyn_N: Rapsyn N-te 75.2 8.2 0.00018 26.4 4.4 40 439-478 25-66 (80)
363 KOG2063 Vacuolar assembly/sort 74.6 1.2E+02 0.0026 32.1 16.1 114 176-289 507-638 (877)
364 PHA02875 ankyrin repeat protei 74.5 83 0.0018 30.1 13.5 76 183-265 9-88 (413)
365 PF06552 TOM20_plant: Plant sp 73.8 27 0.00058 28.6 7.7 71 226-306 54-136 (186)
366 KOG4077 Cytochrome c oxidase, 73.4 38 0.00083 25.8 8.8 39 441-479 70-108 (149)
367 COG2976 Uncharacterized protei 73.2 53 0.0012 27.3 14.1 90 215-306 97-188 (207)
368 KOG1586 Protein required for f 72.9 61 0.0013 27.9 18.3 62 283-344 119-186 (288)
369 KOG4642 Chaperone-dependent E3 71.7 64 0.0014 27.9 9.7 82 150-233 22-104 (284)
370 PF09477 Type_III_YscG: Bacter 71.4 38 0.00083 24.9 8.3 78 153-236 21-98 (116)
371 PHA02875 ankyrin repeat protei 70.8 1E+02 0.0022 29.5 14.6 208 113-346 9-229 (413)
372 KOG0686 COP9 signalosome, subu 69.5 1E+02 0.0022 29.0 15.4 63 209-271 152-216 (466)
373 KOG4507 Uncharacterized conser 69.2 20 0.00044 35.0 7.2 85 186-271 620-705 (886)
374 PRK11619 lytic murein transgly 68.8 1.4E+02 0.0031 30.6 37.0 97 88-190 84-180 (644)
375 PF07575 Nucleopor_Nup85: Nup8 68.6 27 0.00059 35.1 8.5 28 431-461 509-536 (566)
376 KOG0991 Replication factor C, 67.6 81 0.0018 27.2 13.3 37 379-416 236-272 (333)
377 PF10579 Rapsyn_N: Rapsyn N-te 67.5 23 0.00049 24.4 5.2 19 245-263 46-64 (80)
378 COG0790 FOG: TPR repeat, SEL1 67.5 95 0.0021 27.9 23.5 150 254-412 53-221 (292)
379 KOG1464 COP9 signalosome, subu 67.4 88 0.0019 27.5 18.3 250 116-372 40-328 (440)
380 smart00028 TPR Tetratricopepti 64.6 15 0.00032 18.8 3.6 23 211-233 5-27 (34)
381 PRK12798 chemotaxis protein; R 63.5 1.4E+02 0.003 28.4 19.0 226 219-457 93-332 (421)
382 PRK14700 recombination factor 62.8 1.2E+02 0.0026 27.4 18.4 128 134-274 63-198 (300)
383 PF08311 Mad3_BUB1_I: Mad3/BUB 62.7 68 0.0015 24.6 8.9 43 439-481 82-125 (126)
384 PF04190 DUF410: Protein of un 62.5 1.1E+02 0.0024 27.1 16.8 83 380-484 88-170 (260)
385 KOG2659 LisH motif-containing 62.4 1E+02 0.0022 26.5 9.6 97 100-198 23-128 (228)
386 PF11846 DUF3366: Domain of un 62.1 39 0.00085 28.2 7.2 32 379-410 141-172 (193)
387 PF11838 ERAP1_C: ERAP1-like C 61.8 1.3E+02 0.0028 27.5 14.2 63 101-166 167-229 (324)
388 PF14689 SPOB_a: Sensor_kinase 61.4 20 0.00042 23.4 4.0 24 386-409 27-50 (62)
389 KOG0292 Vesicle coat complex C 60.4 97 0.0021 32.3 10.1 109 65-200 591-699 (1202)
390 KOG2066 Vacuolar assembly/sort 60.4 2.1E+02 0.0046 29.5 23.6 27 279-305 507-533 (846)
391 KOG2471 TPR repeat-containing 60.0 1.7E+02 0.0037 28.4 17.0 109 321-430 249-382 (696)
392 PF09670 Cas_Cas02710: CRISPR- 59.3 1.4E+02 0.0031 28.2 11.0 52 323-375 142-197 (379)
393 COG5108 RPO41 Mitochondrial DN 58.9 82 0.0018 31.7 9.1 77 352-428 33-114 (1117)
394 PF09670 Cas_Cas02710: CRISPR- 58.8 1.7E+02 0.0036 27.8 11.4 55 112-167 140-198 (379)
395 KOG2297 Predicted translation 58.7 1.4E+02 0.003 26.9 14.7 71 323-402 266-341 (412)
396 cd08819 CARD_MDA5_2 Caspase ac 58.3 63 0.0014 22.8 6.8 14 256-269 50-63 (88)
397 PRK10941 hypothetical protein; 58.1 83 0.0018 28.0 8.6 76 176-251 184-260 (269)
398 PF14853 Fis1_TPR_C: Fis1 C-te 57.2 43 0.00093 21.0 4.8 29 388-418 7-35 (53)
399 KOG1308 Hsp70-interacting prot 57.2 22 0.00047 32.3 4.8 87 187-274 128-214 (377)
400 cd00280 TRFH Telomeric Repeat 56.0 96 0.0021 25.6 7.7 67 258-327 85-158 (200)
401 PF14689 SPOB_a: Sensor_kinase 55.6 22 0.00047 23.2 3.5 30 454-483 22-51 (62)
402 PF08424 NRDE-2: NRDE-2, neces 55.6 1.7E+02 0.0037 26.9 17.1 150 194-354 52-226 (321)
403 PF10345 Cohesin_load: Cohesin 55.6 2.5E+02 0.0053 28.8 39.9 186 83-269 37-252 (608)
404 KOG2297 Predicted translation 55.3 1.6E+02 0.0035 26.6 16.5 21 277-297 321-341 (412)
405 PRK10564 maltose regulon perip 54.9 26 0.00056 31.3 4.9 38 105-142 259-296 (303)
406 PF00244 14-3-3: 14-3-3 protei 54.8 1.4E+02 0.0031 25.9 10.2 59 212-270 6-65 (236)
407 PF10345 Cohesin_load: Cohesin 54.7 2.5E+02 0.0055 28.7 34.9 193 101-303 28-251 (608)
408 PF13762 MNE1: Mitochondrial s 54.5 1.1E+02 0.0023 24.3 8.6 85 106-190 42-132 (145)
409 PF11848 DUF3368: Domain of un 54.3 48 0.001 20.2 5.1 31 115-145 14-44 (48)
410 PF12862 Apc5: Anaphase-promot 54.1 78 0.0017 22.6 6.6 23 388-410 47-69 (94)
411 PF11848 DUF3368: Domain of un 54.0 48 0.0011 20.2 5.1 31 219-249 14-44 (48)
412 PF12862 Apc5: Anaphase-promot 52.5 66 0.0014 23.0 6.0 53 218-270 9-69 (94)
413 smart00386 HAT HAT (Half-A-TPR 52.3 24 0.00052 18.6 3.0 10 190-199 4-13 (33)
414 PRK10564 maltose regulon perip 52.2 31 0.00067 30.9 4.9 30 210-239 260-289 (303)
415 COG5108 RPO41 Mitochondrial DN 52.2 98 0.0021 31.1 8.5 91 317-410 33-131 (1117)
416 PF11663 Toxin_YhaV: Toxin wit 51.6 15 0.00033 28.2 2.6 18 294-311 112-129 (140)
417 TIGR01503 MthylAspMut_E methyl 51.0 1.7E+02 0.0037 28.1 9.6 46 257-305 69-114 (480)
418 KOG0687 26S proteasome regulat 50.6 2E+02 0.0043 26.3 15.4 135 238-376 66-210 (393)
419 KOG1308 Hsp70-interacting prot 50.5 15 0.00032 33.3 2.7 94 150-244 126-219 (377)
420 cd08819 CARD_MDA5_2 Caspase ac 50.4 88 0.0019 22.1 7.1 35 289-328 48-82 (88)
421 PF11663 Toxin_YhaV: Toxin wit 49.9 21 0.00045 27.5 3.0 32 324-357 107-138 (140)
422 COG0735 Fur Fe2+/Zn2+ uptake r 49.3 46 0.001 26.3 5.1 43 109-151 26-68 (145)
423 PRK09857 putative transposase; 49.2 1.8E+02 0.0038 26.4 9.4 28 247-274 245-272 (292)
424 PF10475 DUF2450: Protein of u 49.0 1.4E+02 0.0029 27.1 8.8 114 179-302 104-222 (291)
425 KOG0991 Replication factor C, 48.8 1.8E+02 0.0039 25.2 15.7 127 106-241 133-272 (333)
426 KOG2034 Vacuolar sorting prote 48.6 3.5E+02 0.0076 28.5 27.2 49 111-165 366-416 (911)
427 PF10366 Vps39_1: Vacuolar sor 48.3 86 0.0019 23.3 6.1 26 315-340 42-67 (108)
428 COG0735 Fur Fe2+/Zn2+ uptake r 48.1 1.1E+02 0.0024 24.2 7.1 47 231-278 10-56 (145)
429 PF14853 Fis1_TPR_C: Fis1 C-te 48.0 64 0.0014 20.2 4.6 27 459-485 5-31 (53)
430 KOG2422 Uncharacterized conser 47.4 3E+02 0.0066 27.4 17.3 154 186-339 251-446 (665)
431 PF14561 TPR_20: Tetratricopep 47.1 1E+02 0.0022 21.9 7.7 33 204-236 19-51 (90)
432 PRK10941 hypothetical protein; 47.0 2.1E+02 0.0046 25.5 10.4 60 351-411 185-244 (269)
433 KOG1114 Tripeptidyl peptidase 46.5 4E+02 0.0086 28.5 14.0 53 416-471 1230-1283(1304)
434 TIGR02508 type_III_yscG type I 46.3 1.1E+02 0.0025 22.3 8.6 52 181-237 47-98 (115)
435 cd07153 Fur_like Ferric uptake 46.3 59 0.0013 24.3 5.3 45 109-153 6-50 (116)
436 COG0790 FOG: TPR repeat, SEL1 45.9 2.2E+02 0.0049 25.5 25.1 83 292-377 128-221 (292)
437 PF12926 MOZART2: Mitotic-spin 45.8 1E+02 0.0023 21.6 7.9 42 124-165 29-70 (88)
438 KOG2471 TPR repeat-containing 45.4 3E+02 0.0065 26.8 14.1 107 286-394 249-381 (696)
439 PF01475 FUR: Ferric uptake re 45.1 49 0.0011 25.0 4.6 45 108-152 12-56 (120)
440 PF14669 Asp_Glu_race_2: Putat 44.8 1.9E+02 0.004 24.2 13.8 24 387-410 137-160 (233)
441 KOG0687 26S proteasome regulat 44.8 2.5E+02 0.0054 25.7 13.9 92 383-478 105-204 (393)
442 PF10366 Vps39_1: Vacuolar sor 44.7 1.3E+02 0.0028 22.4 6.8 27 384-410 41-67 (108)
443 COG5187 RPN7 26S proteasome re 44.1 2.4E+02 0.0052 25.3 13.6 67 277-343 115-186 (412)
444 PF11817 Foie-gras_1: Foie gra 43.9 1.4E+02 0.0031 26.2 7.9 21 144-164 184-204 (247)
445 KOG0376 Serine-threonine phosp 43.9 60 0.0013 31.1 5.6 102 147-252 13-115 (476)
446 KOG0686 COP9 signalosome, subu 43.5 2.9E+02 0.0064 26.2 14.5 63 174-236 151-216 (466)
447 PRK09857 putative transposase; 43.3 2.5E+02 0.0054 25.5 9.4 65 351-416 210-274 (292)
448 KOG4642 Chaperone-dependent E3 42.1 2.4E+02 0.0051 24.7 10.9 116 185-302 22-142 (284)
449 KOG2396 HAT (Half-A-TPR) repea 42.0 3.5E+02 0.0075 26.5 34.0 99 379-483 456-558 (568)
450 smart00777 Mad3_BUB1_I Mad3/BU 41.9 1.6E+02 0.0034 22.6 8.2 42 439-480 82-124 (125)
451 KOG4567 GTPase-activating prot 41.8 1.8E+02 0.0039 26.3 7.8 43 298-340 264-306 (370)
452 KOG1114 Tripeptidyl peptidase 41.6 4.7E+02 0.01 28.0 13.5 81 329-410 1213-1294(1304)
453 PF10255 Paf67: RNA polymerase 41.3 2E+02 0.0044 27.4 8.7 131 137-269 38-191 (404)
454 PF11817 Foie-gras_1: Foie gra 40.9 1.7E+02 0.0038 25.6 8.0 55 352-406 183-242 (247)
455 PF02184 HAT: HAT (Half-A-TPR) 40.6 59 0.0013 17.9 3.1 22 398-421 3-24 (32)
456 PF09454 Vps23_core: Vps23 cor 40.3 89 0.0019 20.6 4.5 49 102-151 7-55 (65)
457 PF15297 CKAP2_C: Cytoskeleton 40.1 2.4E+02 0.0052 26.1 8.6 43 384-426 142-184 (353)
458 COG4259 Uncharacterized protei 40.0 1.4E+02 0.0031 21.6 6.5 29 176-204 75-103 (121)
459 PF06855 DUF1250: Protein of u 39.5 46 0.00099 20.1 2.9 41 90-130 2-42 (46)
460 KOG4521 Nuclear pore complex, 38.4 5.8E+02 0.013 28.2 14.9 185 116-302 898-1127(1480)
461 KOG4567 GTPase-activating prot 38.4 2E+02 0.0044 26.0 7.6 73 332-409 263-345 (370)
462 KOG4279 Serine/threonine prote 38.3 4.8E+02 0.01 27.1 12.3 21 464-484 375-395 (1226)
463 KOG0128 RNA-binding protein SA 38.2 5E+02 0.011 27.3 33.4 362 102-475 112-554 (881)
464 PF11123 DNA_Packaging_2: DNA 37.7 1E+02 0.0022 20.8 4.3 26 190-215 14-39 (82)
465 COG2256 MGS1 ATPase related to 37.3 3.7E+02 0.0081 25.6 19.7 105 137-256 191-298 (436)
466 PF09477 Type_III_YscG: Bacter 37.0 1.7E+02 0.0038 21.7 8.1 80 81-168 20-99 (116)
467 PF03745 DUF309: Domain of unk 36.7 1.2E+02 0.0026 19.8 5.6 17 324-340 11-27 (62)
468 cd07153 Fur_like Ferric uptake 36.6 1.5E+02 0.0032 22.1 6.1 48 388-435 6-53 (116)
469 PF05944 Phage_term_smal: Phag 36.5 1.1E+02 0.0024 23.7 5.3 23 464-486 57-79 (132)
470 PF09986 DUF2225: Uncharacteri 35.7 2.8E+02 0.0061 23.7 9.9 51 439-489 144-199 (214)
471 PRK14962 DNA polymerase III su 35.3 4.5E+02 0.0097 25.9 12.5 125 56-180 185-326 (472)
472 PF01475 FUR: Ferric uptake re 34.7 1.5E+02 0.0032 22.4 5.8 45 423-470 13-57 (120)
473 PF04910 Tcf25: Transcriptiona 34.6 4E+02 0.0086 25.1 20.2 210 177-394 14-271 (360)
474 PRK11639 zinc uptake transcrip 34.6 1.8E+02 0.004 23.7 6.6 45 108-152 30-74 (169)
475 PF00772 DnaB: DnaB-like helic 34.2 1.6E+02 0.0034 21.3 5.8 21 75-95 12-32 (103)
476 KOG0545 Aryl-hydrocarbon recep 34.2 3.2E+02 0.007 23.9 8.7 100 183-283 188-305 (329)
477 PRK14956 DNA polymerase III su 34.1 4.7E+02 0.01 25.8 10.6 42 88-131 187-228 (484)
478 COG5187 RPN7 26S proteasome re 33.7 3.6E+02 0.0077 24.3 12.1 69 347-415 115-188 (412)
479 PRK12798 chemotaxis protein; R 33.3 4.4E+02 0.0095 25.2 22.6 221 184-415 92-328 (421)
480 PF10155 DUF2363: Uncharacteri 33.3 2.2E+02 0.0049 21.8 12.3 38 162-199 87-124 (126)
481 KOG0292 Vesicle coat complex C 33.2 3.9E+02 0.0085 28.3 9.6 41 448-488 1075-1117(1202)
482 KOG0376 Serine-threonine phosp 33.2 1.4E+02 0.0031 28.7 6.4 105 180-287 11-115 (476)
483 PRK13341 recombination factor 33.0 6E+02 0.013 26.7 18.6 166 118-305 169-360 (725)
484 KOG2659 LisH motif-containing 32.7 3.2E+02 0.007 23.5 9.7 19 250-268 72-90 (228)
485 PF14669 Asp_Glu_race_2: Putat 32.5 3E+02 0.0065 23.1 17.2 25 247-271 137-161 (233)
486 PF00244 14-3-3: 14-3-3 protei 32.2 3.4E+02 0.0074 23.6 11.8 40 248-287 7-46 (236)
487 KOG2062 26S proteasome regulat 32.2 6E+02 0.013 26.4 26.4 197 71-271 27-239 (929)
488 KOG2422 Uncharacterized conser 31.9 5.4E+02 0.012 25.8 19.8 91 320-410 350-447 (665)
489 PF02847 MA3: MA3 domain; Int 31.6 2.1E+02 0.0046 21.1 8.6 22 352-373 7-28 (113)
490 PF02847 MA3: MA3 domain; Int 31.6 2.1E+02 0.0046 21.1 7.2 21 213-233 8-28 (113)
491 PF11768 DUF3312: Protein of u 31.4 5.4E+02 0.012 25.6 10.9 123 144-272 414-537 (545)
492 PRK11639 zinc uptake transcrip 30.6 3E+02 0.0065 22.4 7.5 45 318-362 31-75 (169)
493 KOG1839 Uncharacterized protei 30.4 8.1E+02 0.018 27.4 11.9 130 275-404 971-1121(1236)
494 COG4003 Uncharacterized protei 30.0 97 0.0021 21.4 3.4 26 463-488 39-64 (98)
495 PF12968 DUF3856: Domain of Un 29.9 2.5E+02 0.0055 21.4 7.3 19 464-482 109-127 (144)
496 PF09986 DUF2225: Uncharacteri 29.9 3.6E+02 0.0077 23.1 11.1 26 386-411 169-194 (214)
497 PF04190 DUF410: Protein of un 29.8 4E+02 0.0086 23.6 18.1 26 276-301 89-114 (260)
498 PF09868 DUF2095: Uncharacteri 29.8 2.3E+02 0.005 21.2 5.5 35 144-179 67-101 (128)
499 PF04090 RNA_pol_I_TF: RNA pol 29.7 3.3E+02 0.0072 22.9 7.3 49 104-153 42-91 (199)
500 PF12926 MOZART2: Mitotic-spin 29.1 2.1E+02 0.0046 20.2 8.0 41 263-303 29-69 (88)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2e-62 Score=496.68 Aligned_cols=417 Identities=17% Similarity=0.311 Sum_probs=397.2
Q ss_pred CHHHHHHHHHHHh--hChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 011137 68 TPQLVDQIIKRLW--NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145 (493)
Q Consensus 68 ~~~~~~~~l~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 145 (493)
+.......+..+. .+...|+++|++|....-.+++...++.++..|.+.|..++|+.+++.|.. |+..+|+.++
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL 444 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLM 444 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHH
Confidence 4445555556654 456899999999988766678888999999999999999999999999975 8999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhc-CCCCCcchHHHHHHHHHhcCChh
Q 011137 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTN 224 (493)
Q Consensus 146 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~ 224 (493)
.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. +..||..+|+.+|.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 99999999999999999999999999999999999999999999999999999975 57899999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 011137 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK--RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302 (493)
Q Consensus 225 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 302 (493)
+|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|++++.+|++.|++++|.++|++
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 57899999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH
Q 011137 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382 (493)
Q Consensus 303 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 382 (493)
|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011137 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462 (493)
Q Consensus 383 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 462 (493)
.+|+.|+.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|+.++ |.++|++|.+.|+.||..||+.++
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~ee---Alelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPK---ALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCccc
Q 011137 463 NGLLLIGNQGLAKEILRLQSRCGRLPRQF 491 (493)
Q Consensus 463 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~ 491 (493)
.+|++.|+.++|.++++.|.+.|+.|+..
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~ 790 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLV 790 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999998753
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-61 Score=490.64 Aligned_cols=404 Identities=20% Similarity=0.332 Sum_probs=386.3
Q ss_pred hChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011137 81 NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160 (493)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 160 (493)
.....|+++|+.+.. |+..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++
T Consensus 420 g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~v 494 (1060)
T PLN03218 420 RAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494 (1060)
T ss_pred CCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHH
Confidence 346789999988854 799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhc-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh--CC
Q 011137 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVD--RG 237 (493)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~--~g 237 (493)
|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.. +..||..+|+.++.+|++.|++++|.++|++|.. .|
T Consensus 495 f~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g 574 (1060)
T PLN03218 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP 574 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999974 5889999999999999999999999999999986 67
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011137 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317 (493)
Q Consensus 238 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 317 (493)
+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.
T Consensus 575 i~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyns 654 (1060)
T PLN03218 575 IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654 (1060)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 011137 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397 (493)
Q Consensus 318 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 397 (493)
+|.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|+
T Consensus 655 LI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~ 734 (1060)
T PLN03218 655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ 734 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----c-----
Q 011137 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL----I----- 468 (493)
Q Consensus 398 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~----- 468 (493)
+++|.++|++|.+.|+.||..+|+.++.+|++.|+.++ |.+++.+|.+.|+.||..+|+.++..|.+ .
T Consensus 735 ~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~---A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~ 811 (1060)
T PLN03218 735 LPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV---GLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGE 811 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999 99999999999999999999999876432 1
Q ss_pred --------------CCHHHHHHHHHHHHhcCCCCcccc
Q 011137 469 --------------GNQGLAKEILRLQSRCGRLPRQFK 492 (493)
Q Consensus 469 --------------g~~~~a~~~~~~~~~~g~~~~~~~ 492 (493)
+..++|..+|+.|.+.|+.|+..+
T Consensus 812 ~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T 849 (1060)
T PLN03218 812 PVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEV 849 (1060)
T ss_pred hhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHH
Confidence 224679999999999999998654
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-57 Score=459.56 Aligned_cols=394 Identities=20% Similarity=0.282 Sum_probs=251.8
Q ss_pred HHHHHHHHHh--hChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 011137 71 LVDQIIKRLW--NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERY 148 (493)
Q Consensus 71 ~~~~~l~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 148 (493)
....++..+. .++..|+++|+|+....++.|+..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.++..|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 4455566554 45789999999998876778999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhc-CCCCCcchHHHHHHHHHhcCChhHHH
Q 011137 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKAL 227 (493)
Q Consensus 149 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~ 227 (493)
++.|+++.|.++|++|.+ ||..+||.++.+|++.|++++|.++|++|.. +..|+..+|+.++.+|++.|..+.+.
T Consensus 169 ~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred hcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 999999999999999964 7889999999999999999999999999854 35555555555555555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 011137 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307 (493)
Q Consensus 228 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 307 (493)
+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|+.++|.++|++|.+.|
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 5555555555555555555555555555555555555555432 244555555555555555555555555555555
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 011137 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387 (493)
Q Consensus 308 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 387 (493)
+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~ 396 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNA 396 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHH
Confidence 5555555555555555555555555555555555555555555555555555555555555555543 234445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 011137 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD-RGFMPRKFTFNRVLNGLL 466 (493)
Q Consensus 388 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~~~ 466 (493)
||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|..++ |.++|++|.+ .|+.|+..+|+.++.+|+
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~---a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ---GWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHH---HHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 555555555555555555555555555555555555555555555554 5555555543 345555555555555555
Q ss_pred HcCCHHHHHHHHH
Q 011137 467 LIGNQGLAKEILR 479 (493)
Q Consensus 467 ~~g~~~~a~~~~~ 479 (493)
+.|+.++|.++++
T Consensus 474 r~G~~~eA~~~~~ 486 (697)
T PLN03081 474 REGLLDEAYAMIR 486 (697)
T ss_pred hcCCHHHHHHHHH
Confidence 5555555544443
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.2e-57 Score=466.25 Aligned_cols=406 Identities=18% Similarity=0.240 Sum_probs=365.7
Q ss_pred HHHHHHHHHHh--hChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 011137 70 QLVDQIIKRLW--NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147 (493)
Q Consensus 70 ~~~~~~l~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 147 (493)
.+.+.++..+. .+...|.++|+.+. .+|..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++++
T Consensus 122 ~~~n~li~~~~~~g~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~ 196 (857)
T PLN03077 122 RLGNAMLSMFVRFGELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT 196 (857)
T ss_pred hHHHHHHHHHHhCCChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Confidence 33344455433 34567888888875 358889999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHH
Q 011137 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKAL 227 (493)
Q Consensus 148 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 227 (493)
|...++++.+.+++..+.+.|+.|+..++|.|+.+|++.|++++|.++|++|.. +|..+||.++.+|++.|++++|+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~~~eAl 273 (857)
T PLN03077 197 CGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGECLEGL 273 (857)
T ss_pred hCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999874 59999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 011137 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307 (493)
Q Consensus 228 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 307 (493)
++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..|.+.|..||..+|+.|+.+|++.|++++|.++|++|..
T Consensus 274 ~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-- 351 (857)
T PLN03077 274 ELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-- 351 (857)
T ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 011137 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387 (493)
Q Consensus 308 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 387 (493)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.+.+.|+.|+..+|+.
T Consensus 352 --~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~ 429 (857)
T PLN03077 352 --KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA 429 (857)
T ss_pred --CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 688899999999999999999999999999999999999999999999999999999999999998888888888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCC------------------------------C------------------------
Q 011137 388 LIRYFCDAGEIERGLELFEKMGSGV------------------------------C------------------------ 413 (493)
Q Consensus 388 l~~~~~~~g~~~~a~~~~~~~~~~~------------------------------~------------------------ 413 (493)
|+.+|++.|++++|.++|++|.+.+ +
T Consensus 430 Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~ 509 (857)
T PLN03077 430 LIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGK 509 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhH
Confidence 8888888888888888887775431 1
Q ss_pred -----------------------------------------CCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCC
Q 011137 414 -----------------------------------------LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452 (493)
Q Consensus 414 -----------------------------------------~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~ 452 (493)
.||..+|+.+|.+|++.|+.++ |.++|++|.+.|+.
T Consensus 510 ~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~---A~~lf~~M~~~g~~ 586 (857)
T PLN03077 510 EIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSM---AVELFNRMVESGVN 586 (857)
T ss_pred HHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHH---HHHHHHHHHHcCCC
Confidence 3456678888888888888888 99999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCCCCcc
Q 011137 453 PRKFTFNRVLNGLLLIGNQGLAKEILRLQS-RCGRLPRQ 490 (493)
Q Consensus 453 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~g~~~~~ 490 (493)
||..||+.++.+|.+.|++++|.++|+.|. ++|+.|+.
T Consensus 587 Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 587 PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred CCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 999999999999999999999999999998 78988863
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.2e-56 Score=450.27 Aligned_cols=402 Identities=18% Similarity=0.270 Sum_probs=340.0
Q ss_pred CCCHHHHHHHHHHHhh--ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 011137 66 HWTPQLVDQIIKRLWN--HALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAI 143 (493)
Q Consensus 66 ~~~~~~~~~~l~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (493)
.++...+..++..+.. ..+.|.+++..+... |+.|+..+||.++..|++.|+++.|.++|++|.+ ||..+|+.
T Consensus 120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~ 194 (697)
T PLN03081 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESS-GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGT 194 (697)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHH
Confidence 4455555555555433 234455555555443 4455555555555555555555555555555542 45555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHH-----------------------------------HhCCCCCCHHHHHHHHHHHHccCC
Q 011137 144 IAERYVSAGKADRAVKIFLSM-----------------------------------HEHGCRQSLNSFNTILDLLCKEKK 188 (493)
Q Consensus 144 l~~~~~~~g~~~~a~~~~~~~-----------------------------------~~~~~~~~~~~~~~ll~~~~~~g~ 188 (493)
++.+|++.|++++|+++|++| .+.|+.+|..+||.|+.+|++.|+
T Consensus 195 li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~ 274 (697)
T PLN03081 195 IIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD 274 (697)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCC
Confidence 555555555555555555555 445556666777899999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 189 VEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268 (493)
Q Consensus 189 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 268 (493)
+++|.++|+.|.. +|..+||.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|
T Consensus 275 ~~~A~~vf~~m~~---~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m 351 (697)
T PLN03081 275 IEDARCVFDGMPE---KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGL 351 (697)
T ss_pred HHHHHHHHHhCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 9999999999875 5999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 011137 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348 (493)
Q Consensus 269 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 348 (493)
.+.|+.+|..+|+.|+++|++.|++++|.++|++|.+ ||..+|+.||.+|++.|+.++|.++|++|.+.|+.||..
T Consensus 352 ~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~ 427 (697)
T PLN03081 352 IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV 427 (697)
T ss_pred HHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH
Confidence 9999999999999999999999999999999999965 699999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 011137 349 TYNVVIRGLCHTGEMERALEFVGRMKD-DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427 (493)
Q Consensus 349 ~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 427 (493)
||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++|. +.|+..+|+.++.+|
T Consensus 428 T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~---~~p~~~~~~~Ll~a~ 504 (697)
T PLN03081 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP---FKPTVNMWAALLTAC 504 (697)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC---CCCCHHHHHHHHHHH
Confidence 999999999999999999999999986 4999999999999999999999999999998874 679999999999999
Q ss_pred hccCCcccHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 011137 428 FVRKKSDDLLVAGKLLIEMVDRGFMPR-KFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487 (493)
Q Consensus 428 ~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~ 487 (493)
...|+.+. |..+++++.+ +.|+ ..+|..+++.|++.|++++|.++++.|.+.|+.
T Consensus 505 ~~~g~~~~---a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 505 RIHKNLEL---GRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHcCCcHH---HHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 99999999 8899999875 4565 679999999999999999999999999999975
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.5e-55 Score=450.56 Aligned_cols=399 Identities=17% Similarity=0.200 Sum_probs=357.5
Q ss_pred CCHHHHHHHHHHHhh--ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 011137 67 WTPQLVDQIIKRLWN--HALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII 144 (493)
Q Consensus 67 ~~~~~~~~~l~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 144 (493)
++....+.++..+.. +.+.|.++|+.+.. +|..+||++|.+|++.|++++|.++|++|...|+.||..+|+.+
T Consensus 220 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~l 294 (857)
T PLN03077 220 LDVDVVNALITMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294 (857)
T ss_pred cccchHhHHHHHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHH
Confidence 344445555555543 45789999998853 57889999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChh
Q 011137 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTN 224 (493)
Q Consensus 145 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 224 (493)
+.+|++.|+.+.|.+++..|.+.|+.||..+||.|+.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|+++
T Consensus 295 l~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~ 371 (857)
T PLN03077 295 ISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPD 371 (857)
T ss_pred HHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999999999999999999999999999874 69999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 011137 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304 (493)
Q Consensus 225 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 304 (493)
+|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.+.|..++..+|+.|+++|++.|++++|.++|++|.
T Consensus 372 ~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 451 (857)
T PLN03077 372 KALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP 451 (857)
T ss_pred HHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC------
Q 011137 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC------ 378 (493)
Q Consensus 305 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------ 378 (493)
+ +|..+|+.+|.+|++.|+.++|..+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+
T Consensus 452 ~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~ 526 (857)
T PLN03077 452 E----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFL 526 (857)
T ss_pred C----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcccee
Confidence 5 5777888888888888888888888888875 4777777777777666665555555555555544433
Q ss_pred ------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcc
Q 011137 379 ------------------------EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434 (493)
Q Consensus 379 ------------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 434 (493)
.+|..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.++
T Consensus 527 ~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ 606 (857)
T PLN03077 527 PNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVT 606 (857)
T ss_pred chHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHH
Confidence 56788899999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011137 435 DLLVAGKLLIEMV-DRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481 (493)
Q Consensus 435 ~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 481 (493)
+ |.++|++|. +.|+.|+..+|+.++.+|++.|++++|.++++.|
T Consensus 607 e---a~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 607 Q---GLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred H---HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 9 999999999 6799999999999999999999999999999887
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=8.4e-26 Score=238.61 Aligned_cols=385 Identities=14% Similarity=0.098 Sum_probs=213.1
Q ss_pred ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 011137 82 HALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161 (493)
Q Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 161 (493)
+.+.|...|+.+.... +.+..++..+...+.+.|++++|...++++...+. .+...+..++..|...|++++|.+++
T Consensus 514 ~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~ 590 (899)
T TIGR02917 514 NPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAIL 590 (899)
T ss_pred CHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 3344455444443321 23444555555555555555555555555544332 33444445555555555555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 011137 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241 (493)
Q Consensus 162 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~ 241 (493)
+.+.+.. +.+...|..+..++...|++++|...|+.+.+..+.+...+..+...+...|++++|..+++++.+.... +
T Consensus 591 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~ 668 (899)
T TIGR02917 591 NEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-N 668 (899)
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-C
Confidence 5554432 3344555555555555555555555555554444444455555555555555555555555555544322 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011137 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321 (493)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 321 (493)
..++..++..+...|++++|.++++.+.+... .+...+..+...+...|++++|.+.|+++...+ |+..++..++.+
T Consensus 669 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 745 (899)
T TIGR02917 669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRA 745 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHH
Confidence 44555555555555555555555555555432 244555555556666666666666666655542 233445555556
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011137 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401 (493)
Q Consensus 322 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 401 (493)
+.+.|++++|...++.+.+... .+...+..+...|...|++++|..+|+++.+.. +.+...++.+...+...|+ .+|
T Consensus 746 ~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A 822 (899)
T TIGR02917 746 LLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRA 822 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHH
Confidence 6666666666666666555432 245555556666666666666666666666553 3455566666666666666 556
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011137 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481 (493)
Q Consensus 402 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 481 (493)
+..++++.+.. +-+...+..+...+...|++++ |.++++++++.+. .+..++..+..++.+.|+.++|.++++.+
T Consensus 823 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~---A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 823 LEYAEKALKLA-PNIPAILDTLGWLLVEKGEADR---ALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666665531 2244455566666666666666 6677777776542 25666666677777777777777777665
Q ss_pred H
Q 011137 482 S 482 (493)
Q Consensus 482 ~ 482 (493)
.
T Consensus 898 ~ 898 (899)
T TIGR02917 898 L 898 (899)
T ss_pred h
Confidence 4
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=5.3e-25 Score=232.52 Aligned_cols=390 Identities=10% Similarity=0.067 Sum_probs=283.8
Q ss_pred hChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011137 81 NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160 (493)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 160 (493)
++.+.|...|+.+.... +.+...+..+...+...|++++|.+.++.+...++ .+..++..+...+.+.|+.++|...
T Consensus 479 ~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~ 555 (899)
T TIGR02917 479 GDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAW 555 (899)
T ss_pred CCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44556666666554432 33455566666666666666666666666665532 3556666666667777777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 011137 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240 (493)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 240 (493)
++++...+ +.+...+..++..+.+.|++++|..+++.+....+.+..+|..++.++...|++++|...|+++.+....
T Consensus 556 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~- 633 (899)
T TIGR02917 556 LEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD- 633 (899)
T ss_pred HHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 77666543 3455566667777777777777777777776666666777777777777777787777777777765432
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011137 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320 (493)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 320 (493)
+...+..+..++.+.|++++|..+++++.+.. +.+..++..++..+...|++++|.++++.+.+.+ +.+...+..+..
T Consensus 634 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 711 (899)
T TIGR02917 634 SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGD 711 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHH
Confidence 55667777777777788888888877777653 3356777777777888888888888888777664 345667777778
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011137 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400 (493)
Q Consensus 321 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 400 (493)
.+...|++++|...++.+...+ |+..++..+..++.+.|++++|.+.++.+.+.. +.+...+..+...|...|++++
T Consensus 712 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~ 788 (899)
T TIGR02917 712 LYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDK 788 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 8888888888888888887764 444667777888888888888888888888764 5577888888888888999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011137 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480 (493)
Q Consensus 401 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 480 (493)
|.+.|+++.+.. +.+...++.+...+...|+ .+ |+.+++++.+.. .-+..++..+...+...|++++|.++++.
T Consensus 789 A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~---A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 862 (899)
T TIGR02917 789 AIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PR---ALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRK 862 (899)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HH---HHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999888763 4577888888888888888 66 888888888752 23456677778888999999999999998
Q ss_pred HHhcCC
Q 011137 481 QSRCGR 486 (493)
Q Consensus 481 ~~~~g~ 486 (493)
+.+.+.
T Consensus 863 a~~~~~ 868 (899)
T TIGR02917 863 AVNIAP 868 (899)
T ss_pred HHhhCC
Confidence 888654
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=2.8e-22 Score=190.29 Aligned_cols=299 Identities=11% Similarity=0.075 Sum_probs=163.3
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccCC
Q 011137 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS---LNSFNTILDLLCKEKK 188 (493)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~ 188 (493)
.+...|++++|...|+++.+.++ .+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 34556677777777777766542 3455666666677777777777777776665321111 1345556666666666
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHH
Q 011137 189 VEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL----TTYNIVLKGYFRAGQIEEAWRF 264 (493)
Q Consensus 189 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~ 264 (493)
+++|..+|+++.+..+.+..+++.++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.|++++|.+.
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 666666666666554455556666666666666666666666666654432211 1233445555556666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011137 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344 (493)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 344 (493)
++++.+... .+...+..+...+.+.|++++|.++|+++.+.+......+++.++.+|.+.|++++|...++.+.+. .
T Consensus 203 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 279 (389)
T PRK11788 203 LKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--Y 279 (389)
T ss_pred HHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 666555422 2344455555555556666666666655554322111234455555555555555555555555544 2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHhcCCCCCC
Q 011137 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD---AGEIERGLELFEKMGSGVCLPN 416 (493)
Q Consensus 345 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~ 416 (493)
|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..++++|.+.++.|+
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 33334445555555555555555555555443 3455455544444442 2355555555555554444433
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=4.5e-22 Score=188.85 Aligned_cols=302 Identities=13% Similarity=0.176 Sum_probs=242.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCC----cchHHHHHHHHHhc
Q 011137 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKAD----VISYNVIANGWCLV 220 (493)
Q Consensus 145 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~ 220 (493)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+......+ ...+..++..|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 445677899999999999999864 4566788889999999999999999998877642211 24678889999999
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCCHHHH
Q 011137 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID----VVTYTTIVHGFGVVGEIKRA 296 (493)
Q Consensus 221 ~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A 296 (493)
|++++|.++|+++.+... .+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 999999999999987533 3677889999999999999999999999988654332 22456677788899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 011137 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376 (493)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 376 (493)
...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999988753 23466778888999999999999999999987643333456788889999999999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhc---cCCcccHHHHHHHHHHHHHCCCCC
Q 011137 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV---RKKSDDLLVAGKLLIEMVDRGFMP 453 (493)
Q Consensus 377 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~---~~~~~~~~~A~~~~~~m~~~g~~p 453 (493)
.|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.++ ++.++++|.++++.|
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~---a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKE---SLLLLRDLVGEQLKR 351 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchh---HHHHHHHHHHHHHhC
Confidence 456667788899999999999999999988874 5888888888877664 446777 899999999887777
Q ss_pred CHH
Q 011137 454 RKF 456 (493)
Q Consensus 454 ~~~ 456 (493)
++.
T Consensus 352 ~p~ 354 (389)
T PRK11788 352 KPR 354 (389)
T ss_pred CCC
Confidence 755
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=5.3e-21 Score=173.91 Aligned_cols=369 Identities=14% Similarity=0.108 Sum_probs=297.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH-HHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS-FNT 178 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~ 178 (493)
+.-.++|..+..++-..|+++.|+.+++.+.+... .....|..+..++...|+.+.|.+.|.+.++.+ |+... ...
T Consensus 113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~ 189 (966)
T KOG4626|consen 113 PQGAEAYSNLANILKERGQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSD 189 (966)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcc
Confidence 34678899999999999999999999999988653 467899999999999999999999999988753 55443 344
Q ss_pred HHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 011137 179 ILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258 (493)
Q Consensus 179 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 258 (493)
+...+...|++++|...|.+.....+-=...|+.|...+-..|+...|+..|++....... =...|-.|...|...+.+
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIF 268 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcc
Confidence 5555666789999888887766655556678999999999999999999999998875332 246788899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338 (493)
Q Consensus 259 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 338 (493)
++|...+.+...... .....+..+...|...|+++.|++.|++.++... .-...|+.|..++-..|++.+|...|...
T Consensus 269 d~Avs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 269 DRAVSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred hHHHHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 999999888877633 3577788888888999999999999999887532 13568899999999999999999999888
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-
Q 011137 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN-VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN- 416 (493)
Q Consensus 339 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~- 416 (493)
...... .....+.|...+.+.|.+++|..+|....+- .|. ...++.|...|-+.|++++|+..|++..+ +.|+
T Consensus 347 L~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~f 421 (966)
T KOG4626|consen 347 LRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTF 421 (966)
T ss_pred HHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchH
Confidence 876322 4567888888999999999999999888765 333 55678888899999999999999998887 5676
Q ss_pred HHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011137 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR-KFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484 (493)
Q Consensus 417 ~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 484 (493)
...|+.+...|-..|+.+. |++.+.+.+. +.|. ....+.|...|-..|+..+|++-++...+.
T Consensus 422 Ada~~NmGnt~ke~g~v~~---A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSA---AIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHHhcchHHHHhhhHHH---HHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 5678888888888888888 8888888886 4676 567777888888899999998888877765
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=2.6e-19 Score=178.81 Aligned_cols=367 Identities=13% Similarity=0.034 Sum_probs=259.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 011137 107 DHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186 (493)
Q Consensus 107 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 186 (493)
......+.+.|++++|+..|++..... |+...|..+..+|...|++++|++.++...+.. +.+...|..+..+|...
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 344445555666666666666655432 345555556666666666666666666655543 33445555556666666
Q ss_pred CCHHHHHHHHHHhh------------------------------cCCCCCcchHHHHHH---------------------
Q 011137 187 KKVEKAYNLFKVFR------------------------------GKFKADVISYNVIAN--------------------- 215 (493)
Q Consensus 187 g~~~~A~~~~~~~~------------------------------~~~~~~~~~~~~l~~--------------------- 215 (493)
|++++|+..|.... ...+.+...+..+..
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 66665554332211 111111111111100
Q ss_pred ------------HH---HhcCChhHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 011137 216 ------------GW---CLVKRTNKALEVLKEMVDRG-LNP-NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278 (493)
Q Consensus 216 ------------~~---~~~~~~~~A~~~~~~m~~~g-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 278 (493)
.+ ...+++++|.+.|++..+.+ ..| +...+..+...+...|++++|+..+++..+.... ...
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~ 366 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQ 366 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHH
Confidence 00 12367899999999998765 233 4467888889999999999999999999887432 567
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 011137 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358 (493)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 358 (493)
.|..+...+...|++++|+..|+++.+... .+..+|..+...+...|++++|...|++..+.... +...+..+..++.
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~ 444 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHH
Confidence 888899999999999999999999988643 36788999999999999999999999999987432 5667778888999
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHH------HHHHHHHHHhccCC
Q 011137 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLD------TYNILISSMFVRKK 432 (493)
Q Consensus 359 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~------~~~~li~~~~~~~~ 432 (493)
+.|++++|+..+++..+.. +.+...++.+...+...|++++|++.|++..+.....+.. .++.....+...|+
T Consensus 445 ~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence 9999999999999998763 4567899999999999999999999999988753211111 11222223334578
Q ss_pred cccHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011137 433 SDDLLVAGKLLIEMVDRGFMPR-KFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485 (493)
Q Consensus 433 ~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 485 (493)
+++ |.+++++.++. .|+ ...+..+...+...|++++|.++++...+..
T Consensus 524 ~~e---A~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 524 FIE---AENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHH---HHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 888 99999998875 354 5578889999999999999999999887654
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=2.2e-19 Score=190.92 Aligned_cols=387 Identities=10% Similarity=0.028 Sum_probs=259.9
Q ss_pred hhChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-HHHH------------HHHHH
Q 011137 80 WNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPT-QKTF------------AIIAE 146 (493)
Q Consensus 80 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~------------~~l~~ 146 (493)
..+.+.|+..|+.+.... |.+...+..+..++.+.|++++|...|++..+...... ...+ .....
T Consensus 282 ~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 356678888888876543 45778888888888888999999988888877543221 1111 12244
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHH
Q 011137 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKA 226 (493)
Q Consensus 147 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 226 (493)
.+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|++.|++.....+.+...+..+...+. .++.++|
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A 437 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKA 437 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHH
Confidence 5677888889998888888764 4556677778888888889999988888877665656666655555543 2344555
Q ss_pred HHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 011137 227 LEVLKEMVDRGLN--------PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298 (493)
Q Consensus 227 ~~~~~~m~~~g~~--------p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 298 (493)
+.+++.+...... .....+..+...+...|++++|++.+++..+.... +...+..+...|.+.|++++|+.
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555443211000 00112333445555566666666666666555332 44555556666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHH--------------------------------------------HHHHHHHhcCCHHHHHHH
Q 011137 299 VFDGMVNGGVLPSVATYN--------------------------------------------AMIQVLCKKDSVENAILV 334 (493)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~--------------------------------------------~li~~~~~~~~~~~a~~~ 334 (493)
.++++.+... .+...+. .+...+...|+.++|..+
T Consensus 517 ~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 517 LMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 6666554321 1222222 223445556666666666
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 011137 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414 (493)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 414 (493)
++. .+.+...+..+...+.+.|++++|+..|+++.+.. +.+...+..++..|...|++++|++.++.+.+.. +
T Consensus 596 l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p 668 (1157)
T PRK11447 596 LRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-N 668 (1157)
T ss_pred HHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-C
Confidence 551 23355567778888999999999999999999874 5578889999999999999999999999887742 2
Q ss_pred CCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011137 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF--MP---RKFTFNRVLNGLLLIGNQGLAKEILRLQS 482 (493)
Q Consensus 415 p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~--~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 482 (493)
.+...+..+..++...|++++ |.+++++++...- .| +...+..+...+...|++++|.+.++...
T Consensus 669 ~~~~~~~~la~~~~~~g~~~e---A~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAA---AQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHH---HHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356667778888889999998 9999999886421 12 23456667778889999999999998664
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=3e-19 Score=177.75 Aligned_cols=321 Identities=9% Similarity=0.034 Sum_probs=218.5
Q ss_pred hChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011137 81 NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160 (493)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 160 (493)
.++..|+.+++.+.... +.++..+..++......|+++.|...++++....+ .+...+..+...+...|++++|+..
T Consensus 56 g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~ 132 (656)
T PRK15174 56 DETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADL 132 (656)
T ss_pred CCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHH
Confidence 45667777776665543 34555666666666677888888888888777643 4566777777777778888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 011137 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240 (493)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 240 (493)
++++.+.. +.+...+..+..++...|++++|...++.+....+.+...+..+. .+...|++++|...++.+.+....+
T Consensus 133 l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~ 210 (656)
T PRK15174 133 AEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALE 210 (656)
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 87777653 345666777777777788888887777766554444444444433 3667788888888877776654333
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH----HHHHHHHHHHCCCCCCHHHHH
Q 011137 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR----ARNVFDGMVNGGVLPSVATYN 316 (493)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~ 316 (493)
+...+..+...+...|++++|+..++++.+.... +...+..+...+...|++++ |+..|++..+... .+...+.
T Consensus 211 ~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~ 288 (656)
T PRK15174 211 RQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVT 288 (656)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHH
Confidence 4445555566777778888888888877766433 56677777777777777774 6777777776532 3566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHHhc
Q 011137 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV-QTYNILIRYFCDA 395 (493)
Q Consensus 317 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 395 (493)
.+...+.+.|++++|...+++..+.... +...+..+..++.+.|++++|...++.+...+ |+. ..+..+..++...
T Consensus 289 ~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~ 365 (656)
T PRK15174 289 LYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQA 365 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHC
Confidence 7777777788888888888777765322 34556667777777788888888887777652 332 3344456667777
Q ss_pred CCHHHHHHHHHHHhcC
Q 011137 396 GEIERGLELFEKMGSG 411 (493)
Q Consensus 396 g~~~~a~~~~~~~~~~ 411 (493)
|+.++|...|++..+.
T Consensus 366 G~~deA~~~l~~al~~ 381 (656)
T PRK15174 366 GKTSEAESVFEHYIQA 381 (656)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 8888888888777664
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=1.7e-18 Score=172.33 Aligned_cols=327 Identities=9% Similarity=0.046 Sum_probs=146.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 011137 109 AIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188 (493)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 188 (493)
++..+.+.|++++|..+++......+ -+...+..++.+....|++++|+..++++.... +.+...+..+...+...|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC
Confidence 33444445555555555555444432 223333344444444555555555555554432 2333444444445555555
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 189 VEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268 (493)
Q Consensus 189 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 268 (493)
+++|...+++.....+.+...+..+...+...|++++|...++.+......+ ...+..+ ..+...|++++|...++.+
T Consensus 126 ~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 126 YATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHH
Confidence 5555555555444434444445555555555555555555555444332221 1122111 2244445555555555554
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCC
Q 011137 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN----AILVFEEMVGKGYM 344 (493)
Q Consensus 269 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~~~~~ 344 (493)
.+.....+...+..+...+...|++++|+..++++.+... .+...+..+...+...|++++ |...+++..+....
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~ 282 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD 282 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC
Confidence 4432222223333334444455555555555555544321 233444444555555555443 44555544443211
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCH-HHHHHH
Q 011137 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL-DTYNIL 423 (493)
Q Consensus 345 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l 423 (493)
+...+..+...+...|++++|...++++.... +.+...+..+...+.+.|++++|.+.++++.+. .|+. ..+..+
T Consensus 283 -~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~ 358 (656)
T PRK15174 283 -NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYA 358 (656)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHH
Confidence 33444444555555555555555555554432 223334444455555555555555555554442 1222 122223
Q ss_pred HHHHhccCCcccHHHHHHHHHHHH
Q 011137 424 ISSMFVRKKSDDLLVAGKLLIEMV 447 (493)
Q Consensus 424 i~~~~~~~~~~~~~~A~~~~~~m~ 447 (493)
..++...|+.++ |...+++..
T Consensus 359 a~al~~~G~~de---A~~~l~~al 379 (656)
T PRK15174 359 AAALLQAGKTSE---AESVFEHYI 379 (656)
T ss_pred HHHHHHCCCHHH---HHHHHHHHH
Confidence 334444455554 444454444
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=8.8e-20 Score=166.06 Aligned_cols=388 Identities=12% Similarity=0.052 Sum_probs=315.4
Q ss_pred hChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011137 81 NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160 (493)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 160 (493)
.+..+|.+....+.... +.+....-.+-.++.+..+.+.....-....+. .+.-.++|..+...+-..|++++|+..
T Consensus 62 gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg~~~~al~~ 138 (966)
T KOG4626|consen 62 GDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERGQLQDALAL 138 (966)
T ss_pred cCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhchHHHHHHH
Confidence 35678888887775443 223333334444566666666555444443333 234678999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 011137 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240 (493)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 240 (493)
++.+.+.. +..+..|..+..++...|+.+.|.+.|....+-.|...-..+.+...+...|+.++|...|.+.++....
T Consensus 139 y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~- 216 (966)
T KOG4626|consen 139 YRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPC- 216 (966)
T ss_pred HHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCc-
Confidence 99999864 4567889999999999999999999998877665544555666777777899999999999999876432
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011137 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320 (493)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 320 (493)
=.+.|..|...+-..|+...|+..|++..+.+.. -...|-.|...|...+.++.|...|.+...... .....+..+..
T Consensus 217 fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp-n~A~a~gNla~ 294 (966)
T KOG4626|consen 217 FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLRP-NHAVAHGNLAC 294 (966)
T ss_pred eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC-cchhhccceEE
Confidence 3468899999999999999999999999887433 366788899999999999999999999887532 24567888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011137 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400 (493)
Q Consensus 321 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 400 (493)
.|...|..+.|+..|++.++.... -...|+.|..++-..|++.+|.+.|....... +......+.|...|...|.+++
T Consensus 295 iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~ 372 (966)
T KOG4626|consen 295 IYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEE 372 (966)
T ss_pred EEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchH
Confidence 999999999999999999987322 35689999999999999999999999999874 4467788999999999999999
Q ss_pred HHHHHHHHhcCCCCCC-HHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 011137 401 GLELFEKMGSGVCLPN-LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR-KFTFNRVLNGLLLIGNQGLAKEIL 478 (493)
Q Consensus 401 a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~ 478 (493)
|..+|+...+ +.|. ....+.|...|.+.|+.++ |+..+++.++ +.|+ ...|+.+...|-..|+...|.+.+
T Consensus 373 A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~---Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y 445 (966)
T KOG4626|consen 373 ATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDD---AIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCY 445 (966)
T ss_pred HHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHH---HHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHH
Confidence 9999999988 4554 5678899999999999999 9999999997 6888 678888999999999999999988
Q ss_pred HHHHhc
Q 011137 479 RLQSRC 484 (493)
Q Consensus 479 ~~~~~~ 484 (493)
...+..
T Consensus 446 ~rAI~~ 451 (966)
T KOG4626|consen 446 TRAIQI 451 (966)
T ss_pred HHHHhc
Confidence 876654
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.88 E-value=6e-18 Score=180.00 Aligned_cols=365 Identities=12% Similarity=0.032 Sum_probs=276.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHH-----------
Q 011137 109 AIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ-SLNSF----------- 176 (493)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~----------- 176 (493)
....+...|++++|...|++..+..+ .+..++..+...+.+.|++++|+..|++..+..... ....|
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 35567788999999999999988753 478899999999999999999999999998754211 11112
Q ss_pred -HHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011137 177 -NTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255 (493)
Q Consensus 177 -~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 255 (493)
......+.+.|++++|+..|++.....+.+...+..+...+...|++++|++.|+++.+.... +...+..+...+. .
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-h
Confidence 122446778999999999999998887778888999999999999999999999999976443 4566777777764 5
Q ss_pred CCHHHHHHHHHHHHHCCC--------CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 011137 256 GQIEEAWRFFLEMKKRKC--------EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327 (493)
Q Consensus 256 g~~~~a~~~~~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 327 (493)
++.++|..+++.+..... ......+..+...+...|++++|++.|++.++... -+...+..+...|.+.|+
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence 678999988876543210 01123455677888999999999999999998643 256778889999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-------------------------------
Q 011137 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD------------------------------- 376 (493)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------------------------------- 376 (493)
+++|...++++.+.... +...+..+...+...++.++|+..++.+...
T Consensus 511 ~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 99999999998875322 3333333333334444555544444332110
Q ss_pred --------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHH
Q 011137 377 --------ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448 (493)
Q Consensus 377 --------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~ 448 (493)
..+.+...+..+...+.+.|++++|++.|++..+.. +.+...+..++..+...|+.++ |.+.++...+
T Consensus 590 ~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~e---A~~~l~~ll~ 665 (1157)
T PRK11447 590 AEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAA---ARAQLAKLPA 665 (1157)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH---HHHHHHHHhc
Confidence 124455677788899999999999999999998862 3367889999999999999999 9999998876
Q ss_pred CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011137 449 RGFMPR-KFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484 (493)
Q Consensus 449 ~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 484 (493)
. .|+ ..++..+..++...|++++|.++++.+.+.
T Consensus 666 ~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 666 T--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred c--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 4 444 556677778888999999999999987764
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=1.5e-17 Score=169.16 Aligned_cols=405 Identities=10% Similarity=0.017 Sum_probs=308.0
Q ss_pred CCCCHHHHHHHHHH--HhhChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH
Q 011137 65 LHWTPQLVDQIIKR--LWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142 (493)
Q Consensus 65 ~~~~~~~~~~~l~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 142 (493)
..+++..+..-+.. ..++...|++.+..+.... +.+...+..+...+.+.|++++|..++++..+..+ .+...+.
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~ 87 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQR 87 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHH
Confidence 45667777655444 3466788999998887522 44667799999999999999999999999888743 5677888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCC
Q 011137 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKR 222 (493)
Q Consensus 143 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 222 (493)
.++..+...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++....|.+...+..+...+...+.
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 89999999999999999999998763 45666 88888999999999999999999998888888888889999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HH
Q 011137 223 TNKALEVLKEMVDRGLNPNL------TTYNIVLKGYF-----RAGQI---EEAWRFFLEMKKR-KCEIDVV-TY----TT 282 (493)
Q Consensus 223 ~~~A~~~~~~m~~~g~~p~~------~~~~~l~~~~~-----~~g~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~ 282 (493)
.++|++.++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+ ..
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 9999999887654 2221 11222233222 12234 7788888888864 1222221 11 11
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHH
Q 011137 283 IVHGFGVVGEIKRARNVFDGMVNGGVL-PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP---NSTTYNVVIRGLC 358 (493)
Q Consensus 283 li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~ 358 (493)
.+..+...|++++|+..|+++.+.+.. |+. ....+...|...|++++|+.+|+++.+..... .......+..++.
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 133456779999999999999887532 332 22335778999999999999999987653221 1245666777889
Q ss_pred hcCCHHHHHHHHHHhhhCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 011137 359 HTGEMERALEFVGRMKDDEC-----------EPN---VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424 (493)
Q Consensus 359 ~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li 424 (493)
..|++++|..+++.+..... .|+ ...+..+...+...|+.++|+++++++... .+.+...+..+.
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA 400 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYA 400 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 99999999999999987521 123 235567888899999999999999999886 344678899999
Q ss_pred HHHhccCCcccHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011137 425 SSMFVRKKSDDLLVAGKLLIEMVDRGFMPR-KFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484 (493)
Q Consensus 425 ~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 484 (493)
..+...|++++ |++.+++.++. .|+ ...+......+...|++++|.++++.+.+.
T Consensus 401 ~l~~~~g~~~~---A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 401 SVLQARGWPRA---AENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHhcCCHHH---HHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999999999 99999999985 576 566666777889999999999999988764
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=1.4e-17 Score=166.51 Aligned_cols=357 Identities=16% Similarity=0.072 Sum_probs=277.3
Q ss_pred hChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011137 81 NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160 (493)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 160 (493)
.++..|+..|+.+... .|++..|..+..++.+.|++++|+..++...+..+ .+..++..+..+|...|++++|+.-
T Consensus 141 ~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~lg~~~eA~~~ 216 (615)
T TIGR00990 141 KDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYDGLGKYADALLD 216 (615)
T ss_pred CCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5678999999988654 34678899999999999999999999999988753 4678899999999999999999876
Q ss_pred HHHHHhCCC-----------------------------CCCHHHHHHH------------------------------HH
Q 011137 161 FLSMHEHGC-----------------------------RQSLNSFNTI------------------------------LD 181 (493)
Q Consensus 161 ~~~~~~~~~-----------------------------~~~~~~~~~l------------------------------l~ 181 (493)
|..+...+. +.+...+..+ +.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (615)
T TIGR00990 217 LTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQ 296 (615)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHH
Confidence 654432110 0000000000 00
Q ss_pred HH------HccCCHHHHHHHHHHhhcC---CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011137 182 LL------CKEKKVEKAYNLFKVFRGK---FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252 (493)
Q Consensus 182 ~~------~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 252 (493)
.. ...+++++|.+.|+..... .+.....|+.+...+...|++++|+..+++..+.... +...|..+...+
T Consensus 297 l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~ 375 (615)
T TIGR00990 297 LGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMN 375 (615)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHH
Confidence 00 1125788899998887643 2335567889999999999999999999999876433 466888999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011137 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332 (493)
Q Consensus 253 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 332 (493)
...|++++|...++++.+... .+..+|..+...+...|++++|+..|++..+... .+...+..+..++.+.|++++|+
T Consensus 376 ~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~ 453 (615)
T TIGR00990 376 LELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSM 453 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999988743 3688999999999999999999999999998643 35777888899999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHH
Q 011137 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV------QTYNILIRYFCDAGEIERGLELFE 406 (493)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~ 406 (493)
..+++..+.. +.+...++.+...+...|++++|+..|++........+. ..++.....+...|++++|.++++
T Consensus 454 ~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~ 532 (615)
T TIGR00990 454 ATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCE 532 (615)
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9999998763 235778889999999999999999999999876321111 112222333445799999999999
Q ss_pred HHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHC
Q 011137 407 KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449 (493)
Q Consensus 407 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~ 449 (493)
+..+.. +.+...+..+...+...|++++ |++.|++..+.
T Consensus 533 kAl~l~-p~~~~a~~~la~~~~~~g~~~e---Ai~~~e~A~~l 571 (615)
T TIGR00990 533 KALIID-PECDIAVATMAQLLLQQGDVDE---ALKLFERAAEL 571 (615)
T ss_pred HHHhcC-CCcHHHHHHHHHHHHHccCHHH---HHHHHHHHHHH
Confidence 988753 2345678889999999999999 99999998865
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=6.9e-17 Score=164.42 Aligned_cols=374 Identities=12% Similarity=0.028 Sum_probs=286.9
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 011137 99 YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178 (493)
Q Consensus 99 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 178 (493)
.+.++....-.+.+....|+.++|++++.+..... +.+...+..+...+...|++++|.+++++..+.. +.+...+..
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 88 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRG 88 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 35677777888888999999999999999998632 3566789999999999999999999999998763 456777888
Q ss_pred HHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 011137 179 ILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258 (493)
Q Consensus 179 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 258 (493)
+..++...|++++|...++++....|.+.. +..+...+...|+.++|+..++++.+..+. +...+..+..++...|..
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCh
Confidence 889999999999999999999888777888 999999999999999999999999987555 556667788888889999
Q ss_pred HHHHHHHHHHHHCCCCCCH------HHHHHHHHHHh-----ccCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHH
Q 011137 259 EEAWRFFLEMKKRKCEIDV------VTYTTIVHGFG-----VVGEI---KRARNVFDGMVNG-GVLPSVA-TY----NAM 318 (493)
Q Consensus 259 ~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~~~~~-~~~~~~~-~~----~~l 318 (493)
++|++.++.+... |+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+ ...
T Consensus 167 e~Al~~l~~~~~~---p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 167 APALGAIDDANLT---PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred HHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 9999998866541 111 11222333322 22334 7889999998864 1222221 11 111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC---CHHHHHHHHHHHHh
Q 011137 319 IQVLCKKDSVENAILVFEEMVGKGYM-PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP---NVQTYNILIRYFCD 394 (493)
Q Consensus 319 i~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 394 (493)
+..+...|++++|+..|+.+.+.+.. |+. ....+..+|...|++++|+..|+++....... .......+..++..
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 34456779999999999999987532 332 22335778999999999999999987653111 13556777788899
Q ss_pred cCCHHHHHHHHHHHhcCCC-----------CCC---HHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011137 395 AGEIERGLELFEKMGSGVC-----------LPN---LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460 (493)
Q Consensus 395 ~g~~~~a~~~~~~~~~~~~-----------~p~---~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 460 (493)
.|++++|.++++++.+... .|+ ...+..+...+...|+.++ |++.++++.... .-+...+..
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e---A~~~l~~al~~~-P~n~~l~~~ 398 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ---AEMRARELAYNA-PGNQGLRID 398 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-CCCHHHHHH
Confidence 9999999999999987521 123 2345667778889999999 999999998762 444778888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc
Q 011137 461 VLNGLLLIGNQGLAKEILRLQSRC 484 (493)
Q Consensus 461 l~~~~~~~g~~~~a~~~~~~~~~~ 484 (493)
+...+...|++++|++.++...+.
T Consensus 399 lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 399 YASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhh
Confidence 888999999999999999988775
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=4.5e-15 Score=148.55 Aligned_cols=398 Identities=11% Similarity=0.063 Sum_probs=254.0
Q ss_pred HHHHHHHhhChHHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 011137 73 DQIIKRLWNHALKALHFFNILSYHPTYAHSP-SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSA 151 (493)
Q Consensus 73 ~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (493)
..|+..-..+...|++.|+.+.+.. |.++ ..+ .++.++...|+.++|...+++.... -.........+...|...
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHc
Confidence 3444444455566666666665432 1221 222 6666666667777777766666621 112233333345566666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 011137 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLK 231 (493)
Q Consensus 152 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 231 (493)
|++++|+++|+++.+.. +.+...+..++..+...++.++|++.++++....+ +...+..++..+...++..+|++.++
T Consensus 116 gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp-~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 116 KRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDP-TVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred CCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc-chHHHHHHHHHHHhcchHHHHHHHHH
Confidence 77777777777766653 33455555666666666777777766666655433 23333333333333455545666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHH------------------------------------------------HHHH
Q 011137 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIE------------------------------------------------EAWR 263 (493)
Q Consensus 232 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~------------------------------------------------~a~~ 263 (493)
++.+.... +...+..+..++.+.|-.. .|+.
T Consensus 194 kll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 194 EAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 66665432 3444444444444333322 2333
Q ss_pred HHHHHHHC-CCCCC-HHH----HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011137 264 FFLEMKKR-KCEID-VVT----YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337 (493)
Q Consensus 264 ~~~~~~~~-~~~~~-~~~----~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 337 (493)
-++.+... +..|. ... ..-.+-++...|++.++++.|+.+...+.+....+-..+.++|...++.++|..+++.
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 33333331 11122 111 1223456778899999999999999887766667888899999999999999999999
Q ss_pred HHhCC-----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-------------CCCH-HHHHHHHHHHHhcCCH
Q 011137 338 MVGKG-----YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC-------------EPNV-QTYNILIRYFCDAGEI 398 (493)
Q Consensus 338 ~~~~~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-------------~~~~-~~~~~l~~~~~~~g~~ 398 (493)
+.... ..++......|..++...+++++|..+++.+.+... .||- ..+..++..+...|++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 87653 122333457788899999999999999999987311 1221 2345567778889999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 011137 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR-KFTFNRVLNGLLLIGNQGLAKEI 477 (493)
Q Consensus 399 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 477 (493)
.+|++.++++... -+-|......+...+...|.+.+ |.+.++..... .|+ ..+......++...|++++|.++
T Consensus 433 ~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~---A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~ 506 (822)
T PRK14574 433 PTAQKKLEDLSST-APANQNLRIALASIYLARDLPRK---AEQELKAVESL--APRSLILERAQAETAMALQEWHQMELL 506 (822)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHH
Confidence 9999999999775 34588899999999999999999 88999776654 565 55666677788899999999888
Q ss_pred HHHHHh
Q 011137 478 LRLQSR 483 (493)
Q Consensus 478 ~~~~~~ 483 (493)
.+.+..
T Consensus 507 ~~~l~~ 512 (822)
T PRK14574 507 TDDVIS 512 (822)
T ss_pred HHHHHh
Confidence 866544
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=5.8e-15 Score=147.72 Aligned_cols=376 Identities=11% Similarity=0.064 Sum_probs=279.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 179 (493)
+..+.+--.-+-...+.|+++.|...|++..+..+.-....+ .++..+...|+.++|+..+++.... .+........+
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llal 108 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASA 108 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHH
Confidence 334445455555678999999999999999887642212344 8888888999999999999998832 12233334444
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 011137 180 LDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259 (493)
Q Consensus 180 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 259 (493)
...+...|++++|+++|+++.+..|.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHH
Confidence 668888999999999999999988888888989999999999999999999999876 455556655555555567776
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH----------------------------------------
Q 011137 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV---------------------------------------- 299 (493)
Q Consensus 260 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~---------------------------------------- 299 (493)
+|++.++++.+.... +...+..++.++.+.|-...|.++
T Consensus 187 ~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 187 DALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 799999999998543 666666666666655544443333
Q ss_pred --------HHHHHHC-CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 011137 300 --------FDGMVNG-GVLPS-VATY----NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365 (493)
Q Consensus 300 --------~~~~~~~-~~~~~-~~~~----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 365 (493)
++.+... +..|. ...| .=.+-++...|++.++++.|+.+...+.+....+-..+..+|...+++++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 2332221 11121 1111 12344667889999999999999988876566788899999999999999
Q ss_pred HHHHHHHhhhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC-----------C--CCH-HHHHHHHHH
Q 011137 366 ALEFVGRMKDDE-----CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC-----------L--PNL-DTYNILISS 426 (493)
Q Consensus 366 a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~--p~~-~~~~~li~~ 426 (493)
|+.+++.+.... ..++......|..+|...+++++|..+++.+.+... . ||- ..+..++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 999999997652 233444467899999999999999999999987311 1 222 234455677
Q ss_pred HhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011137 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484 (493)
Q Consensus 427 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 484 (493)
+...|+..+ |.+.++++.... .-|......+...+...|.+.+|++.++.....
T Consensus 426 ~~~~gdl~~---Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 426 LVALNDLPT---AQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHcCCHHH---HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 888999999 999999998763 556888888888999999999999999766554
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.77 E-value=6.7e-14 Score=143.14 Aligned_cols=214 Identities=9% Similarity=-0.024 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHhhChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 011137 69 PQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERY 148 (493)
Q Consensus 69 ~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 148 (493)
+......+.....+++.|+..|+.+.+.. |.++.++..+...|.+.|++++|...+++..+..+ -|...+..+ ..+
T Consensus 46 ~~f~~a~~~~~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~L-a~i 121 (987)
T PRK09782 46 PRLDKALKAQKNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSL-AAI 121 (987)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHH-HHh
Confidence 33344445555577888999998887654 45688889999999999999999999999887653 333334333 222
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--------HHccCCHHHHHHHHHHhhcCCCCC--cch-HHHHHHHH
Q 011137 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL--------LCKEKKVEKAYNLFKVFRGKFKAD--VIS-YNVIANGW 217 (493)
Q Consensus 149 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~g~~~~A~~~~~~~~~~~~~~--~~~-~~~l~~~~ 217 (493)
+++++|..+++++.+.. +-+..++..+... |.+. ++|.+.++ .....|+ ... ...+...|
T Consensus 122 ---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY 192 (987)
T PRK09782 122 ---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN--DATFAASPEGKTLRTDLLQRA 192 (987)
T ss_pred ---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH--HhhhCCCCCcHHHHHHHHHHH
Confidence 88888888888888754 3344455444444 4444 34444333 2222222 333 33336777
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 011137 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR-AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296 (493)
Q Consensus 218 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 296 (493)
.+.|++++|++.+.++.+.+.. +......+..+|.. .++ +++..+++. ....+...+..++..|.+.|+.++|
T Consensus 193 ~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A 266 (987)
T PRK09782 193 IYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARL 266 (987)
T ss_pred HHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHH
Confidence 7777777777777777766543 23333334444443 233 444433221 1112344444444444444444444
Q ss_pred HHHHH
Q 011137 297 RNVFD 301 (493)
Q Consensus 297 ~~~~~ 301 (493)
.++++
T Consensus 267 ~~~L~ 271 (987)
T PRK09782 267 QHYLI 271 (987)
T ss_pred HHHHH
Confidence 43333
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=6.3e-14 Score=122.93 Aligned_cols=380 Identities=18% Similarity=0.200 Sum_probs=271.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH--HcCCHHHH-HHHHHHHHhCC----------
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV--SAGKADRA-VKIFLSMHEHG---------- 168 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a-~~~~~~~~~~~---------- 168 (493)
.+.+=|.++.. ...|....+.-+|+.|.+.|++.+...-..+++..+ ...+.--| .+.|-.|.+.|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 34455666654 567889999999999999999888877666655422 22211111 11122222111
Q ss_pred ---------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhc-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 011137 169 ---------CRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238 (493)
Q Consensus 169 ---------~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 238 (493)
.+.+..++..+|.++|+-...+.|.+++++-.. ..+.+..+||.+|.+-.-. ...+++.+|....+
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm 269 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKM 269 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhc
Confidence 245668899999999999999999999988754 4667888999998775433 33789999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH-HHHHHHHHHHC----CCC
Q 011137 239 NPNLTTYNIVLKGYFRAGQIEE----AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR-ARNVFDGMVNG----GVL 309 (493)
Q Consensus 239 ~p~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~----~~~ 309 (493)
.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.+. ..+
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 9999999999999999998765 56788899999999999999999999999988744 55555555442 222
Q ss_pred ----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 011137 310 ----PSVATYNAMIQVLCKKDSVENAILVFEEMVGKG----YMPN---STTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378 (493)
Q Consensus 310 ----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 378 (493)
-|...|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+....+.-..+|+.|+-.-+
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 245567778888889999999988876554331 2222 23456677778888889999999999998877
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccC-CcccH----------HHHHHHHH---
Q 011137 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK-KSDDL----------LVAGKLLI--- 444 (493)
Q Consensus 379 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~-~~~~~----------~~A~~~~~--- 444 (493)
-|+..+...++++..-.|.++-..++|..+...|..-+...-..++..++..+ ..... .-|..+++
T Consensus 430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e 509 (625)
T KOG4422|consen 430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYE 509 (625)
T ss_pred cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999988775555555555555555444 22110 00112221
Q ss_pred ----HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCC
Q 011137 445 ----EMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG-RLP 488 (493)
Q Consensus 445 ----~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g-~~~ 488 (493)
+|... .......+..+-.+.+.|+.++|.+++..+.+.+ ..|
T Consensus 510 ~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip 556 (625)
T KOG4422|consen 510 SQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIP 556 (625)
T ss_pred hhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCC
Confidence 23332 3334455666667889999999999999885543 444
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.75 E-value=2.5e-14 Score=137.62 Aligned_cols=398 Identities=14% Similarity=0.181 Sum_probs=246.0
Q ss_pred HHHHHHhhCh---HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC--CCHHHHHHHHHHH
Q 011137 74 QIIKRLWNHA---LKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLG--PTQKTFAIIAERY 148 (493)
Q Consensus 74 ~~l~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~ 148 (493)
.++....++. ..++..+...-... +.+|...+.+...+.-.|++..++.+.+.+...... .-...|..+.++|
T Consensus 240 ~~~~l~~~d~~s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~ 317 (1018)
T KOG2002|consen 240 GEVDLNFNDSDSYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSY 317 (1018)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 3444444443 45666665553332 468899999999999999999999999998775421 1245688899999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcC----C
Q 011137 149 VSAGKADRAVKIFLSMHEHGCRQSL--NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVK----R 222 (493)
Q Consensus 149 ~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~ 222 (493)
-..|++++|...|.+..+.. ++. ..+.-+.+.+.+.|+++.+...|+.+....|.+..+...|...|...+ .
T Consensus 318 Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~ 395 (1018)
T KOG2002|consen 318 HAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEK 395 (1018)
T ss_pred HhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHH
Confidence 99999999999998887653 333 344567788999999999999999888777777777777777777664 3
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHH--------------------------------------HHHHHHHHhcCCHHHHHHH
Q 011137 223 TNKALEVLKEMVDRGLNPNLTTY--------------------------------------NIVLKGYFRAGQIEEAWRF 264 (493)
Q Consensus 223 ~~~A~~~~~~m~~~g~~p~~~~~--------------------------------------~~l~~~~~~~g~~~~a~~~ 264 (493)
.+.|..++.+..+.-+. |...| |.+...+...|++++|...
T Consensus 396 ~d~a~~~l~K~~~~~~~-d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~ 474 (1018)
T KOG2002|consen 396 RDKASNVLGKVLEQTPV-DSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEH 474 (1018)
T ss_pred HHHHHHHHHHHHhcccc-cHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHH
Confidence 45555555554443221 34444 4444444444555555555
Q ss_pred HHHHHHC---CCCCCH------HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 011137 265 FLEMKKR---KCEIDV------VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS-VATYNAMIQVLCKKDSVENAILV 334 (493)
Q Consensus 265 ~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~ 334 (493)
|+..... ...++. .+-..+...+-..++.+.|.+.|..+.+.. |+ +..|..+.......+...+|...
T Consensus 475 f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~ 552 (1018)
T KOG2002|consen 475 FKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLL 552 (1018)
T ss_pred HHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHH
Confidence 5544433 111111 111223334444445555555555554431 11 11222221111122334444444
Q ss_pred HHHHHhCC-----------------------------------CCCChhhHHHHHHHHHh------------cCCHHHHH
Q 011137 335 FEEMVGKG-----------------------------------YMPNSTTYNVVIRGLCH------------TGEMERAL 367 (493)
Q Consensus 335 ~~~~~~~~-----------------------------------~~~~~~~~~~li~~~~~------------~~~~~~a~ 367 (493)
+.+....+ ..+|+...-.|...|.+ .+..++|+
T Consensus 553 lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAl 632 (1018)
T KOG2002|consen 553 LKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKAL 632 (1018)
T ss_pred HHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHH
Confidence 44433221 11233333333343321 23456777
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHH
Q 011137 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447 (493)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~ 447 (493)
++|..+++.. +.|...-|.+.-.++..|++.+|..+|.+..+... -+..+|-.+.++|+..|++.. |++.|+...
T Consensus 633 q~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~---AIqmYe~~l 707 (1018)
T KOG2002|consen 633 QLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRL---AIQMYENCL 707 (1018)
T ss_pred HHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHH---HHHHHHHHH
Confidence 7777777764 55677777788888888888888888888887532 245678888888888888888 888888776
Q ss_pred HC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 448 DR-GFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483 (493)
Q Consensus 448 ~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (493)
++ +-.-+..+...|.+++.+.|++.+|.+.+.....
T Consensus 708 kkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 708 KKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 55 3334577777888888888888888887765544
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.73 E-value=4.4e-13 Score=137.21 Aligned_cols=353 Identities=12% Similarity=0.056 Sum_probs=253.8
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCC---HH
Q 011137 116 LRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH--GCRQSLNSFNTILDLLCKEKK---VE 190 (493)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~---~~ 190 (493)
.+...++...++.|.+... -+......+.-...+.|+.++|.++|+..... +...+....+-++..|.+.+. ..
T Consensus 355 ~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 355 TRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred cCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 4666777777777766532 36666666667778889999999999888752 112344455577777777765 22
Q ss_pred HHHHH-------------------------HHHhhcCCCC--CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 011137 191 KAYNL-------------------------FKVFRGKFKA--DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243 (493)
Q Consensus 191 ~A~~~-------------------------~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 243 (493)
++..+ +.......++ +...|..+..++.. ++.++|...+.+..... |+..
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~ 510 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAW 510 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchH
Confidence 33222 1111222344 66778888888876 78888999888877653 5554
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011137 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323 (493)
Q Consensus 244 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 323 (493)
....+...+...|++++|...++++... +++...+..+...+.+.|+.++|...+++..+.+. .+...+..+.....
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~ 587 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHH
Confidence 4444555667899999999999987654 33445566777888899999999999999887642 23333333444455
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011137 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403 (493)
Q Consensus 324 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 403 (493)
..|++++|...+++..+. .|+...+..+..++.+.|++++|+..+++..... +.+...++.+...+...|++++|++
T Consensus 588 ~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 588 IPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred hCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 669999999999999876 4567788888899999999999999999998875 5567788888899999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011137 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK-FTFNRVLNGLLLIGNQGLAKEILRLQS 482 (493)
Q Consensus 404 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~ 482 (493)
.+++..+.. +-+...+..+..++...|++++ |...+++.++. .|+. .+............+++.|.+-++...
T Consensus 665 ~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~e---A~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 665 MLERAHKGL-PDDPALIRQLAYVNQRLDDMAA---TQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH---HHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 999988852 3367888899999999999999 99999999874 5664 444445555666666777766665544
Q ss_pred hc
Q 011137 483 RC 484 (493)
Q Consensus 483 ~~ 484 (493)
..
T Consensus 739 ~~ 740 (987)
T PRK09782 739 TF 740 (987)
T ss_pred hc
Confidence 43
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=1.9e-13 Score=119.92 Aligned_cols=342 Identities=14% Similarity=0.135 Sum_probs=237.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 179 (493)
|.+..+|..+|.++++--+.++|.+++++......+.+..+|+.+|.+-.-. ...++..+|......||..++|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHH
Confidence 4577889999999999999999999999988877778899999888764433 237788888888888999999999
Q ss_pred HHHHHccCCHHHHHHH----HHHhhc-CCCCCcchHHHHHHHHHhcCChhH-HHHHHHHHHh----CCCC---C-CHHHH
Q 011137 180 LDLLCKEKKVEKAYNL----FKVFRG-KFKADVISYNVIANGWCLVKRTNK-ALEVLKEMVD----RGLN---P-NLTTY 245 (493)
Q Consensus 180 l~~~~~~g~~~~A~~~----~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~m~~----~g~~---p-~~~~~ 245 (493)
+++..+.|+++.|... +.+|++ ++.|...+|..+|..+++.++..+ |..++.++.. +.++ | |..-|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 9999999988776544 445554 578888999999998888777744 4445555432 1222 2 34556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011137 246 NIVLKGYFRAGQIEEAWRFFLEMKKRK----CEID---VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318 (493)
Q Consensus 246 ~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 318 (493)
...+..|.+..+.+-|.++..-+.... +.++ ..-|..+....|+....+.-...|+.|+-.-+-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 778888888888888888876654431 2222 334566777778888888889999998887777888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-C---HH----------HHHHHH-------HHhhhCC
Q 011137 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG-E---ME----------RALEFV-------GRMKDDE 377 (493)
Q Consensus 319 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~---~~----------~a~~~~-------~~~~~~~ 377 (493)
+++..-.|.++-.-+++.++...|.........-++..+++.. . .+ -|..++ .++.+.
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~- 518 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ- 518 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc-
Confidence 8888888888888888888888775544444444444444433 1 10 011111 122222
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC----CCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCC
Q 011137 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL----PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450 (493)
Q Consensus 378 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g 450 (493)
.......+..+-.+.+.|+.++|.+++.-+.+.+-. |.......+++.....+.... |...++-|...+
T Consensus 519 -~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsq---A~~~lQ~a~~~n 591 (625)
T KOG4422|consen 519 -DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQ---AIEVLQLASAFN 591 (625)
T ss_pred -cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHH---HHHHHHHHHHcC
Confidence 334556677777788889999999888888554322 333333345555556666666 777777776654
No 28
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.72 E-value=1.8e-13 Score=128.71 Aligned_cols=283 Identities=11% Similarity=0.046 Sum_probs=181.1
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHccCCHHHH
Q 011137 116 LRDYRTVWTLVHRMKSLSLGPTQKT-FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN--TILDLLCKEKKVEKA 192 (493)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~~A 192 (493)
.|+++.|.+.+....... +++.. +........+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 478888887776654432 12333 333344447778888888888887764 34433222 335567778888888
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHH
Q 011137 193 YNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL-------TTYNIVLKGYFRAGQIEEAWRFF 265 (493)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~ 265 (493)
...++.+.+..|.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 173 l~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 173 RHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 88888877777777777888888888888888888888888776654222 12233333333444455555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011137 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345 (493)
Q Consensus 266 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 345 (493)
+.+.+. .+.++.....+...+...|+.++|.+++++..+. .++... .++.+....++.+++.+..+...+... -
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P-~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG-D 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCC-C
Confidence 555433 2346667777777777777777777777777663 233321 123333455777777777777766532 2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 346 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
|...+..+...|.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++...
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4555667777777777777777777777764 56777777777777777777777777776543
No 29
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.72 E-value=2.6e-13 Score=128.46 Aligned_cols=298 Identities=10% Similarity=0.016 Sum_probs=183.7
Q ss_pred HHHHHHHH--HhcCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011137 106 FDHAIDLA--ARLRDYRTVWTLVHRMKSLSLGPT-QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182 (493)
Q Consensus 106 ~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 182 (493)
+..+.+++ ...|+++.|.+.+....+.. |+ ...+-....++.+.|+++.|.+.+.+..+....+.....-.....
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 34444443 34688888888887766653 33 334445566777788888888888887654311222233334667
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---HhcCCH
Q 011137 183 LCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN-IVLKGY---FRAGQI 258 (493)
Q Consensus 183 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~-~l~~~~---~~~g~~ 258 (493)
+...|+++.|...++.+.+..|.+...+..+...+...|++++|.+.+..+.+.++. +...+. ....++ ...+..
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~ 241 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMA 241 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888887777777778888888888888888888888888877654 222221 111111 222222
Q ss_pred HHHHHHHHHHHHCCC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHH
Q 011137 259 EEAWRFFLEMKKRKC---EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT---YNAMIQVLCKKDSVENAI 332 (493)
Q Consensus 259 ~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~ 332 (493)
+++.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+... |... ...........++.+.+.
T Consensus 242 ~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p--d~~~~~~~~l~~~~~l~~~~~~~~~ 319 (409)
T TIGR00540 242 DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG--DDRAISLPLCLPIPRLKPEDNEKLE 319 (409)
T ss_pred hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC--CcccchhHHHHHhhhcCCCChHHHH
Confidence 323334444433321 13667777777788888888888888887777532 2221 111112223346667777
Q ss_pred HHHHHHHhCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 011137 333 LVFEEMVGKGYMPNS--TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409 (493)
Q Consensus 333 ~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 409 (493)
+.++...+... -|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++..
T Consensus 320 ~~~e~~lk~~p-~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 320 KLIEKQAKNVD-DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHhCC-CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77766665521 133 44556677777777777777777753333336677777777777777777777777777653
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.71 E-value=6.7e-13 Score=127.12 Aligned_cols=366 Identities=13% Similarity=0.111 Sum_probs=264.4
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 011137 111 DLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190 (493)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 190 (493)
..+...|+.++|.+++.+..+..+ .....|..|...|-..|+.+++...+-.+.... +.|...|..+.....+.|.++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHH
Confidence 334445899999999999888754 577788889999999999988888765555443 556688888888888889999
Q ss_pred HHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHH
Q 011137 191 KAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY----NIVLKGYFRAGQIEEAWRFFL 266 (493)
Q Consensus 191 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~----~~l~~~~~~~g~~~~a~~~~~ 266 (493)
+|.-.|.+..+..|++...+---+..|-+.|+...|...|.++.+.....|..-+ ..++..+...++-+.|.+.++
T Consensus 225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999888888877778777777788888899999999999988876443233222 334555666777788888888
Q ss_pred HHHHC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHH--------------------------HHHH
Q 011137 267 EMKKR-KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY--------------------------NAMI 319 (493)
Q Consensus 267 ~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------------------------~~li 319 (493)
..... +-..+...++.++..|.+...++.|......+......+|..-| -.++
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ 384 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM 384 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence 77663 23345667788888888888888888888777662222222111 1223
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 011137 320 QVLCKKDSVENAILVFEEMVGKG--YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397 (493)
Q Consensus 320 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 397 (493)
-++...+..+....+.....+.+ +.-+...|.-+..+|...|++.+|+.++..+......-+...|-.+..+|...|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 33444555555555555555555 3345667888889999999999999999999887555567788999999999999
Q ss_pred HHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHhccCCcccHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHHc
Q 011137 398 IERGLELFEKMGSGVCLP-NLDTYNILISSMFVRKKSDDLLVAGKLLIEMV--------DRGFMPRKFTFNRVLNGLLLI 468 (493)
Q Consensus 398 ~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~--------~~g~~p~~~~~~~l~~~~~~~ 468 (493)
.++|.+.|++.... .| +...--.|...+.+.|+.++ |.+.+..+. ..+..|+..........+...
T Consensus 465 ~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~Ek---alEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 465 YEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEK---ALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHH---HHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 99999999998875 34 45556667777888899888 888888744 334566666666677788889
Q ss_pred CCHHHHHHHHHHHHh
Q 011137 469 GNQGLAKEILRLQSR 483 (493)
Q Consensus 469 g~~~~a~~~~~~~~~ 483 (493)
|+.++-......|..
T Consensus 540 gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 540 GKREEFINTASTLVD 554 (895)
T ss_pred hhHHHHHHHHHHHHH
Confidence 988875555544443
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.69 E-value=1.4e-13 Score=130.27 Aligned_cols=260 Identities=10% Similarity=-0.019 Sum_probs=115.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 011137 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293 (493)
Q Consensus 214 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 293 (493)
.......|+.+.|.+.+.+..+....+...........+...|+++.|...++.+.+..+. +..++..+...+...|++
T Consensus 125 A~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~ 203 (409)
T TIGR00540 125 AEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAW 203 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhH
Confidence 3344444444444444444433221111112222244444444444444444444444322 334444444444444455
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHH-HHHHH---HHhcCCHHHHHHHHHHHHhCCC---CCChhhHHHHHHHHHhcCCHHHH
Q 011137 294 KRARNVFDGMVNGGVLPSVATYN-AMIQV---LCKKDSVENAILVFEEMVGKGY---MPNSTTYNVVIRGLCHTGEMERA 366 (493)
Q Consensus 294 ~~A~~~~~~~~~~~~~~~~~~~~-~li~~---~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a 366 (493)
+.|.+.+..+.+.+.. +...+. .-..+ ....+..+++.+.+..+.+... ..+...+..+...+...|+.++|
T Consensus 204 ~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A 282 (409)
T TIGR00540 204 QALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSA 282 (409)
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHH
Confidence 4444444444444322 111111 11111 1112222222223333333211 11445555555566666666666
Q ss_pred HHHHHHhhhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCH--HHHHHHHHHHhccCCcccHHHHHH
Q 011137 367 LEFVGRMKDDECEPNVQT---YNILIRYFCDAGEIERGLELFEKMGSGVCLPNL--DTYNILISSMFVRKKSDDLLVAGK 441 (493)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~li~~~~~~~~~~~~~~A~~ 441 (493)
.+.+++..+.. |+... ...........++.+++.+.+++..+. .+-|. ....++...+.+.|++++ |.+
T Consensus 283 ~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-~p~~~~~~ll~sLg~l~~~~~~~~~---A~~ 356 (409)
T TIGR00540 283 QEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-VDDKPKCCINRALGQLLMKHGEFIE---AAD 356 (409)
T ss_pred HHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHcccHHH---HHH
Confidence 66666665542 22211 011111122345556666666555543 11123 444556666666666666 666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011137 442 LLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481 (493)
Q Consensus 442 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 481 (493)
.|+........|+...+..+...+.+.|+.++|.++++..
T Consensus 357 ~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 357 AFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6663222223566666666666666666666666666543
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.68 E-value=3.3e-13 Score=127.00 Aligned_cols=258 Identities=8% Similarity=0.017 Sum_probs=114.6
Q ss_pred HccCCHHHHHHHHHHhhcCCCCCcchH-HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011137 184 CKEKKVEKAYNLFKVFRGKFKADVISY-NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262 (493)
Q Consensus 184 ~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 262 (493)
.+.|+++.|...++++.+..+.+.... ......+...|+++.|.+.++++.+..+. +...+..+...|.+.|++++|.
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHH
Confidence 445555555555555543222111111 12234455555555555555555544332 3444455555555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011137 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342 (493)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 342 (493)
+++..+.+.+...+. ....+- ..+|..++.......+.+...++++.+.+.
T Consensus 208 ~~l~~l~k~~~~~~~-~~~~l~---------------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~- 258 (398)
T PRK10747 208 DILPSMAKAHVGDEE-HRAMLE---------------------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRK- 258 (398)
T ss_pred HHHHHHHHcCCCCHH-HHHHHH---------------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-
Confidence 555555554332111 111000 001111222222222333333333333221
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHH
Q 011137 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422 (493)
Q Consensus 343 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 422 (493)
.+.++.....+...+...|+.++|.+.+++..+. +++.... ++.+....++.+++.+..++..+. .+-|...+..
T Consensus 259 ~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~-~P~~~~l~l~ 333 (398)
T PRK10747 259 TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ-HGDTPLLWST 333 (398)
T ss_pred HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh-CCCCHHHHHH
Confidence 1224444555555555555555555555555542 3333211 122222335555555555555543 1223444555
Q ss_pred HHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011137 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481 (493)
Q Consensus 423 li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 481 (493)
+...|...+++++ |.+.|+.+.+. .|+..++..+...+.+.|+.++|.++++..
T Consensus 334 lgrl~~~~~~~~~---A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 334 LGQLLMKHGEWQE---ASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHCCCHHH---HHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555555555 55555555542 455555555555555555555555555443
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=2.1e-13 Score=120.55 Aligned_cols=207 Identities=15% Similarity=0.166 Sum_probs=167.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011137 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333 (493)
Q Consensus 254 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 333 (493)
..|++++|.+.+++............|+ +.-.+...|++++|++.|-++..- +..+..+...+...|-...+..+|++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 4678999999999988774433333333 344567889999999999887543 22367777888889999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 011137 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413 (493)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 413 (493)
++.+.... ++.|+...+.|...|-+.|+-.+|.+.+-+--.- ++-+.++...|...|....-+++++.+|++..- +
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--i 655 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--I 655 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--c
Confidence 99777654 4557889999999999999999999987665543 577899999999999999999999999998876 6
Q ss_pred CCCHHHHHHHHHHHh-ccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 011137 414 LPNLDTYNILISSMF-VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470 (493)
Q Consensus 414 ~p~~~~~~~li~~~~-~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 470 (493)
.|+..-|..++..|. +.|++.. |+.++++.-++ +.-|...+..|++.+...|-
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqk---a~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQK---AFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHH---HHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 799999999987665 5799999 99999998876 67788888889988877764
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.68 E-value=3e-16 Score=141.15 Aligned_cols=260 Identities=13% Similarity=0.152 Sum_probs=75.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCC
Q 011137 144 IAERYVSAGKADRAVKIFLSMHEHG-CRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKR 222 (493)
Q Consensus 144 l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 222 (493)
+...+...|++++|+++++...... .+.+...|..+.......++++.|...++++....+.+...+..++.. ...++
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 3455555566666666664332221 123344444444455555666666666665554433344445555554 45566
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 011137 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK-CEIDVVTYTTIVHGFGVVGEIKRARNVFD 301 (493)
Q Consensus 223 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 301 (493)
+++|.+++++..+.. ++...+..++..+.+.|+++++.++++.+.... .+.+...|..+...+.+.|+.++|++.++
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666655554432 234445555555666666666666666654432 23345555556666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 011137 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381 (493)
Q Consensus 302 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 381 (493)
+..+... .|......++..+...|+.+++..+++...+.. ..|+..+..+..++...|+.++|+.++++..+.. +.|
T Consensus 171 ~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 171 KALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 6655321 134555556666666666666555555554442 2244455556666666666666666666665542 335
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 011137 382 VQTYNILIRYFCDAGEIERGLELFEKMG 409 (493)
Q Consensus 382 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 409 (493)
......+.+++...|+.++|.++.+++.
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 5556666666666666666666655543
No 35
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.68 E-value=3.7e-12 Score=123.03 Aligned_cols=390 Identities=13% Similarity=0.125 Sum_probs=255.4
Q ss_pred hHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011137 83 ALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFL 162 (493)
Q Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 162 (493)
.+.|..-|..+..+. ++++-.+---..+....|++..|+.+|.......+.--+.....+..++.+.|+.+.|+..|.
T Consensus 146 ~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHH
Confidence 367888888887664 455555555555666778999999999997665433233333444567788899999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 011137 163 SMHEHGCRQSLNSFNTILDLLCK---EKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239 (493)
Q Consensus 163 ~~~~~~~~~~~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 239 (493)
...+.+ +.++.++..|...-.. ...+..+..++...-...+.++...+.|.+.|...|++..+..+...+......
T Consensus 224 ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 888754 2233333333222222 234556666666666666778888999999999999999999998888765311
Q ss_pred --CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011137 240 --PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317 (493)
Q Consensus 240 --p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 317 (493)
.-...|-.+.++|...|++++|...|.+..+.....-...+.-|...|.+.|+++.+...|+.+.+. .+.+..+...
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~i 381 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKI 381 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHH
Confidence 1234577888999999999999999988877644322445566788899999999999999998875 2335566666
Q ss_pred HHHHHHhcC----CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhh----hCCCCCCHHHHHHHH
Q 011137 318 MIQVLCKKD----SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK----DDECEPNVQTYNILI 389 (493)
Q Consensus 318 li~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~ 389 (493)
+...|...+ ..+.|..++....+.- ..|...|-.+...+... +...++.+|..+. ..+..+.++..|.+.
T Consensus 382 LG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNva 459 (1018)
T KOG2002|consen 382 LGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVA 459 (1018)
T ss_pred HHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHH
Confidence 666666654 4566777776666653 33666676666666554 4444477766554 334457778888888
Q ss_pred HHHHhcCCHHHHHHHHHHHhcC---CCCCCH------HHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHH-HHH
Q 011137 390 RYFCDAGEIERGLELFEKMGSG---VCLPNL------DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF-TFN 459 (493)
Q Consensus 390 ~~~~~~g~~~~a~~~~~~~~~~---~~~p~~------~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~ 459 (493)
..+...|++++|...|+..... ...+|. .+-..+...+-..++++. |.+.+...++. .|+-+ .|.
T Consensus 460 slhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~---A~e~Yk~Ilke--hp~YId~yl 534 (1018)
T KOG2002|consen 460 SLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEV---AEEMYKSILKE--HPGYIDAYL 534 (1018)
T ss_pred HHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhH---HHHHHHHHHHH--CchhHHHHH
Confidence 8888888888888888877654 112222 122334444555566676 77777777764 45533 333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 460 RVLNGLLLIGNQGLAKEILRLQSR 483 (493)
Q Consensus 460 ~l~~~~~~~g~~~~a~~~~~~~~~ 483 (493)
.++......+...+|...++...+
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~ 558 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALN 558 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHh
Confidence 333222334566666666655444
No 36
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.67 E-value=5.2e-13 Score=113.13 Aligned_cols=307 Identities=12% Similarity=0.121 Sum_probs=204.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---H
Q 011137 62 CPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPT---Q 138 (493)
Q Consensus 62 ~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~ 138 (493)
.....+|...+..+-..+.+.+++|.+.|-.+.... +.+.++.-++.+.|.+.|..++|+++.+.+..+.--+. .
T Consensus 30 ~qa~~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~ 107 (389)
T COG2956 30 DQANRLSRDYVKGLNFLLSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRL 107 (389)
T ss_pred HHHhhccHHHHhHHHHHhhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHH
Confidence 344556777777777778888888888887776532 34566677778888888899999988888876632121 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCC--Cc---chHHHH
Q 011137 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA--DV---ISYNVI 213 (493)
Q Consensus 139 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~---~~~~~l 213 (493)
.+...+.+-|...|-+|.|.++|..+.+.+ .--......|+..|-...++++|+++-+++.+..+. +. ..|.-+
T Consensus 108 lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCEL 186 (389)
T COG2956 108 LALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCEL 186 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHH
Confidence 244556777888888888888888887644 234556777888888888888888887766543111 11 235555
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 011137 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293 (493)
Q Consensus 214 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 293 (493)
...+....+++.|..++.+..+.+.+ .+..-..+.+.....|+++.|.+.++.+.+.+...-..+...|..+|...|+.
T Consensus 187 Aq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~ 265 (389)
T COG2956 187 AQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP 265 (389)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH
Confidence 56666677788888888887766433 33444456677778888888888888888876666667777778888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh---cCCHHHHHHHH
Q 011137 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH---TGEMERALEFV 370 (493)
Q Consensus 294 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~ 370 (493)
++....+..+.+... +...-..+.+.-....-.+.|..++.+-... +|+...+..+|..-.. .|...+.+.++
T Consensus 266 ~~~~~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~l 341 (389)
T COG2956 266 AEGLNFLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLL 341 (389)
T ss_pred HHHHHHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHH
Confidence 888888877776532 3333344444444444455555555544444 5777777777776543 23455555666
Q ss_pred HHhhhC
Q 011137 371 GRMKDD 376 (493)
Q Consensus 371 ~~~~~~ 376 (493)
+.|+..
T Consensus 342 r~mvge 347 (389)
T COG2956 342 RDMVGE 347 (389)
T ss_pred HHHHHH
Confidence 666543
No 37
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.67 E-value=5e-12 Score=110.57 Aligned_cols=295 Identities=13% Similarity=0.069 Sum_probs=209.1
Q ss_pred HHHHHHHHh--cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011137 107 DHAIDLAAR--LRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184 (493)
Q Consensus 107 ~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 184 (493)
..+.+++.+ .|+|.+|.++..+-.+.+. .....|..-+++.-+.|+.+.+-..+.++.+..-.++..+.-.......
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll 164 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL 164 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 334444444 5888888888888666653 2344566667777788888888888888887643566666777777888
Q ss_pred ccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCC
Q 011137 185 KEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL-------TTYNIVLKGYFRAGQ 257 (493)
Q Consensus 185 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-------~~~~~l~~~~~~~g~ 257 (493)
..|+++.|..-++.+.+..+.+.........+|.+.|++.....++.++.+.|.--|. .+|..++.-....+.
T Consensus 165 ~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 165 NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888888887777778888888888888899999888888888888765443 456666666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011137 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337 (493)
Q Consensus 258 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 337 (493)
.+.-...++..... ...++..-..++.-+..+|+.++|.++.++..+.+..|+. ...-.+.+-++.+.-.+..+.
T Consensus 245 ~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 245 SEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEK 319 (400)
T ss_pred chHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHH
Confidence 66666666665444 3335666667777788888888888888887776655441 122234556666666666655
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 338 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
-.+.. +-++..+.+|...|.+.+.|.+|...|+...+. .|+..+|+.+.+++.+.|+.++|.++.++...
T Consensus 320 ~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 320 WLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 55442 224467777778888888888888888876664 67778888888888888888888887776653
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.66 E-value=9.1e-16 Score=137.98 Aligned_cols=262 Identities=12% Similarity=0.133 Sum_probs=113.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 011137 108 HAIDLAARLRDYRTVWTLVHRMKSLS-LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186 (493)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 186 (493)
.+...+.+.|++++|+++++...... .+.+...|..+...+...++++.|++.++++...+. -+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 55778889999999999996654443 345667777778888889999999999999987652 356677777777 788
Q ss_pred CCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011137 187 KKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG-LNPNLTTYNIVLKGYFRAGQIEEAWRFF 265 (493)
Q Consensus 187 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 265 (493)
+++++|.++++..-+. .++...+..++..+...++++++.++++.+.... ...+...|..+...+.+.|+.++|++.+
T Consensus 91 ~~~~~A~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER-DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc-ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999988765443 3567778888899999999999999999987543 3457788889999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011137 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345 (493)
Q Consensus 266 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 345 (493)
++..+..+. |......++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|...+++..+.+ +.
T Consensus 170 ~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 170 RKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 999997443 68888999999999999999988888887653 3466678889999999999999999999988863 33
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 011137 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKD 375 (493)
Q Consensus 346 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 375 (493)
|......+..++...|+.++|.++.+++..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 788888999999999999999999887654
No 39
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.65 E-value=3.1e-12 Score=122.67 Aligned_cols=332 Identities=15% Similarity=0.147 Sum_probs=259.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCC
Q 011137 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKR 222 (493)
Q Consensus 143 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 222 (493)
.........|++++|.+++.++++.. +.....|..|...|-..|+.+++...+-....-.|.|...|..+.....+.|.
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhccc
Confidence 33444555699999999999999875 56778899999999999999999988766666667788999999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHhccCCHHHHHH
Q 011137 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY----TTIVHGFGVVGEIKRARN 298 (493)
Q Consensus 223 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~A~~ 298 (493)
++.|.-+|.+.++.... +...+-.-+..|-+.|+...|..-|.++.....+.|..-+ -.+++.+...++-+.|.+
T Consensus 223 i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999987544 5666666788899999999999999999988554343333 334566777888899999
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------------------------CCCChhhH
Q 011137 299 VFDGMVNG-GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG---------------------------YMPNSTTY 350 (493)
Q Consensus 299 ~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~ 350 (493)
.++..... +-..+...++.++..|.+...++.|......+.... ..++...
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v- 380 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV- 380 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-
Confidence 99887763 233456678899999999999999999888777621 1122222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHh
Q 011137 351 NVVIRGLCHTGEMERALEFVGRMKDDE--CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428 (493)
Q Consensus 351 ~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 428 (493)
..++-++.+.+..+....+........ +.-+...|.-+..+|...|++.+|+.+|..+......-+...|-.+..+|.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 123334455555566666666666665 334567899999999999999999999999998765567889999999999
Q ss_pred ccCCcccHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011137 429 VRKKSDDLLVAGKLLIEMVDRGFMPR-KFTFNRVLNGLLLIGNQGLAKEILRLQS 482 (493)
Q Consensus 429 ~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 482 (493)
..|.+++ |.+.++..+.. .|+ ...-.+|...+.+.|+.++|.+.++.+.
T Consensus 461 ~l~e~e~---A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 461 ELGEYEE---AIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHhhHHH---HHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999 99999999975 555 4445556667889999999999998754
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=1.4e-13 Score=127.63 Aligned_cols=282 Identities=13% Similarity=0.068 Sum_probs=206.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCC---CCcchHHHHHHHHHhcCChhHHHH
Q 011137 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFK---ADVISYNVIANGWCLVKRTNKALE 228 (493)
Q Consensus 152 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~ 228 (493)
-+..+|+..|..+... +..+..+...+..+|...+++++|.++|+.+....+ .+..+|.+.+..+-+. -++.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHH
Confidence 3567888888885543 344556777788889999999999999988876522 3556777776654332 2222
Q ss_pred HH-HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 011137 229 VL-KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307 (493)
Q Consensus 229 ~~-~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 307 (493)
.+ +++.+.. +-.+.+|..+.++|.-+++.+.|++.|++..+.+.. ...+|+.+.+-+....++|.|...|+..+..
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~- 484 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGV- 484 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcC-
Confidence 22 2333332 225678999999999999999999999988886433 6778888888888888899999999887763
Q ss_pred CCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH
Q 011137 308 VLPSVAT---YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384 (493)
Q Consensus 308 ~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 384 (493)
|... |.-+...|.+.++++.|+-.|+...+-+.. +.+....+...+.+.|+.++|+++++++.... +.|+..
T Consensus 485 ---~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~ 559 (638)
T KOG1126|consen 485 ---DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLC 559 (638)
T ss_pred ---CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchh
Confidence 4444 444667788899999999999888887544 66677777788888899999999999888775 334444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCC
Q 011137 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450 (493)
Q Consensus 385 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g 450 (493)
--.-+..+...+++++|+..++++.+. ++-+...|..+...|.+.|+.+. |+..|--|.+..
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~---Al~~f~~A~~ld 621 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDL---ALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchH---HHHhhHHHhcCC
Confidence 444566666788899999999998884 23345677778888888888888 888888877653
No 41
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.64 E-value=1.4e-11 Score=114.10 Aligned_cols=376 Identities=11% Similarity=0.051 Sum_probs=231.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 011137 97 PTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPT--QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174 (493)
Q Consensus 97 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 174 (493)
.|+..+.+.|-.=...|-+.|..-.+..+.......|+... ..+|..-...|.+.+.++-|..+|...++. ++.+..
T Consensus 473 ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~s 551 (913)
T KOG0495|consen 473 NGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKS 551 (913)
T ss_pred cceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhH
Confidence 45666777777777777777777777777777777665332 356777777777777777777777777664 244556
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011137 175 SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254 (493)
Q Consensus 175 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 254 (493)
.|......--..|..+....+|++.....+.....|......+-..|++..|..++....+.... +...|-..+.....
T Consensus 552 lWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~e 630 (913)
T KOG0495|consen 552 LWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFE 630 (913)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhc
Confidence 66666655555667777777777766666666666666666666677777777777777665444 55666666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011137 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334 (493)
Q Consensus 255 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 334 (493)
..+++.|..+|.+.... .++..+|.--+..---.++.++|.+++++.++. ++.-...|..+.+.+-+.++++.|...
T Consensus 631 n~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~a 707 (913)
T KOG0495|consen 631 NDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREA 707 (913)
T ss_pred cccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHH
Confidence 67777777777666553 445555655555555666677777777666654 222234555666666666666666666
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 011137 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414 (493)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 414 (493)
|..-.+. ++-....|-.+...=-+.|.+-.|..++++..-.+ +-+...|-..|.+-.+.|+.+.|..+..+..+. ++
T Consensus 708 Y~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp 784 (913)
T KOG0495|consen 708 YLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CP 784 (913)
T ss_pred HHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC
Confidence 6554443 22233344444444455566666666666666554 445666666666666666666666666555443 33
Q ss_pred C------------------------------CHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011137 415 P------------------------------NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464 (493)
Q Consensus 415 p------------------------------~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 464 (493)
. |++....+...+....+++. |.+.|.+.++.+ .-+..+|.-+..-
T Consensus 785 ~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~k---ar~Wf~Ravk~d-~d~GD~wa~fykf 860 (913)
T KOG0495|consen 785 SSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEK---AREWFERAVKKD-PDNGDAWAWFYKF 860 (913)
T ss_pred ccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHH---HHHHHHHHHccC-CccchHHHHHHHH
Confidence 3 33444444444444444444 666666666543 2225555556666
Q ss_pred HHHcCCHHHHHHHHHHHHhc
Q 011137 465 LLLIGNQGLAKEILRLQSRC 484 (493)
Q Consensus 465 ~~~~g~~~~a~~~~~~~~~~ 484 (493)
+...|.-+.-.+++.+...+
T Consensus 861 el~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 861 ELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHhCCHHHHHHHHHHHhcc
Confidence 66666666666666655543
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=2e-13 Score=126.67 Aligned_cols=285 Identities=13% Similarity=0.103 Sum_probs=226.9
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHccCCHHHHHHH
Q 011137 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG--CRQSLNSFNTILDLLCKEKKVEKAYNL 195 (493)
Q Consensus 118 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~ 195 (493)
+.++|..+|..+... +.-+..+...+.++|...+++++|.++|+.+.+.. ...+.++|.+.+--+-+ +-++.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 567889999985554 44556888899999999999999999999998643 12356677776654422 122333
Q ss_pred H-HHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 011137 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274 (493)
Q Consensus 196 ~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 274 (493)
+ +.+....+..+.+|.++.++|.-.++.+.|++.|++..+.+.. ...+|+.+..-+.....+|.|...|+..+.....
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 2 4455556778899999999999999999999999999986433 6789999999999999999999999988776322
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 011137 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354 (493)
Q Consensus 275 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 354 (493)
+-..|.-+.-.|.+.++++.|+-.|++..+-+.. +......+...+-+.|+.++|+.++++......+ |+..--..+
T Consensus 488 -hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~ 564 (638)
T KOG1126|consen 488 -HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRA 564 (638)
T ss_pred -hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHH
Confidence 3445555677899999999999999999986443 5667777888889999999999999999887654 555555566
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 011137 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412 (493)
Q Consensus 355 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 412 (493)
..+...+++++|+..++++++. ++-+...+..+...|.+.|+.+.|+.-|--+.+..
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 6777889999999999999986 35567788999999999999999999999888753
No 43
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.64 E-value=2.2e-12 Score=109.41 Aligned_cols=289 Identities=15% Similarity=0.203 Sum_probs=170.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCc------chHHHHHHHHHhcCChh
Q 011137 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADV------ISYNVIANGWCLVKRTN 224 (493)
Q Consensus 151 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~ 224 (493)
..+.++|+++|-+|.+.+ +.+..+.-+|.+.|-+.|.++.|+++-+.+..+ ||. .+...|..-|...|-++
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s--pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES--PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 345566666666666532 334444555666666666666666666555443 111 12334555566667777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCCHHHHHHHH
Q 011137 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID----VVTYTTIVHGFGVVGEIKRARNVF 300 (493)
Q Consensus 225 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~ 300 (493)
.|+.+|..+.+.|.. -......|+..|-...+|++|+++-+++.+.+..+. ...|.-|...+....+.+.|..++
T Consensus 125 RAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 777777776654322 345566677777777777777777776666644332 234555555566667777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 011137 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380 (493)
Q Consensus 301 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 380 (493)
.+..+.+.+ .+..--.+.+.+...|+++.|.+.++...+.+..--+.+...|..+|.+.|+.++.+.++.++.+.. +
T Consensus 204 ~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~ 280 (389)
T COG2956 204 KKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--T 280 (389)
T ss_pred HHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--C
Confidence 777665332 3444445566777777888888877777777555455667777777777888887777777777653 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHH
Q 011137 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448 (493)
Q Consensus 381 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~ 448 (493)
....-..+.+.-....-.+.|...+.+-... .|+...+..++..-..........+-+..++.|+.
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 3333333444433444445555544333332 37777777777655443333222225556666654
No 44
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.62 E-value=1.9e-10 Score=106.78 Aligned_cols=389 Identities=12% Similarity=0.055 Sum_probs=320.5
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH----HhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011137 84 LKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHR----MKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159 (493)
Q Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 159 (493)
..|..+++..++ .+|.++..|-+....=.++|+.+...+++++ +...|+..+...|..=...|-..|..-.+..
T Consensus 423 enAkkvLNkaRe--~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQA 500 (913)
T KOG0495|consen 423 ENAKKVLNKARE--IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQA 500 (913)
T ss_pred HHHHHHHHHHHh--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHH
Confidence 345556666655 3477899999999999999999999988876 4567888999999999999999999999999
Q ss_pred HHHHHHhCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 011137 160 IFLSMHEHGCRQ--SLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237 (493)
Q Consensus 160 ~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g 237 (493)
+....+..|+.. ...+|+.-.+.|.+.+.++-|..+|....+-++.+...|......=-..|..++...+|++....-
T Consensus 501 Ii~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~ 580 (913)
T KOG0495|consen 501 IIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC 580 (913)
T ss_pred HHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 999888777543 346888889999999999999999999998888899999998888888999999999999999864
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011137 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317 (493)
Q Consensus 238 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 317 (493)
.+ ....|......+-..|+...|..++....+.... +...|..-+..-....+++.|..+|.+.... .|+...|..
T Consensus 581 pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mK 656 (913)
T KOG0495|consen 581 PK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMK 656 (913)
T ss_pred Cc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHH
Confidence 33 5667777788888899999999999999988554 8889999999999999999999999998774 567788877
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC
Q 011137 318 MIQVLCKKDSVENAILVFEEMVGKGYMPN-STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396 (493)
Q Consensus 318 li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 396 (493)
-+....-.+..++|.+++++..+. -|+ ...|..+.+.+-+.++.+.|...|..-.+. ++...-.|-.|...=.+.|
T Consensus 657 s~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 657 SANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhc
Confidence 777777789999999999999886 344 456777888899999999999999887765 4556678888888888999
Q ss_pred CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHC---------------------------
Q 011137 397 EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR--------------------------- 449 (493)
Q Consensus 397 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~--------------------------- 449 (493)
++-+|..++++..-.+ +-+...|-..|..=.+.|..+. |..++.+.++.
T Consensus 734 ~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~---a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DA 809 (913)
T KOG0495|consen 734 QLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQ---AELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDA 809 (913)
T ss_pred chhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHH---HHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHH
Confidence 9999999999988764 3478899999999899998888 55444443321
Q ss_pred --CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011137 450 --GFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485 (493)
Q Consensus 450 --g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 485 (493)
...-|..+...+...|....+++.|++.|+...+.+
T Consensus 810 Lkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 810 LKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred HHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 123445556667777888888999999998887764
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=5.7e-11 Score=105.77 Aligned_cols=162 Identities=13% Similarity=0.094 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011137 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323 (493)
Q Consensus 244 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 323 (493)
|+..+.+-|.-.++.++|...|+...+.+.. ....|+.+.+-|....+...|++.|+..++-+. .|-..|-.|.++|.
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p-~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP-RDYRAWYGLGQAYE 409 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc-hhHHHHhhhhHHHH
Confidence 4444444455555555555555555554332 344455555555555555555555555554322 24445555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011137 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403 (493)
Q Consensus 324 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 403 (493)
-.+...-|+-.|++..+... -|...|.+|..+|.+.++.++|++.|.+....| ..+...+..|.+.|-+.++.++|..
T Consensus 410 im~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHH
Confidence 55555555555555544421 144455555555555555555555555555443 2233445555555555555555555
Q ss_pred HHHHHh
Q 011137 404 LFEKMG 409 (493)
Q Consensus 404 ~~~~~~ 409 (493)
.|++-.
T Consensus 488 ~yek~v 493 (559)
T KOG1155|consen 488 YYEKYV 493 (559)
T ss_pred HHHHHH
Confidence 554443
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.9e-11 Score=108.81 Aligned_cols=200 Identities=10% Similarity=-0.003 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011137 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356 (493)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 356 (493)
+.|+.++.+.|+-.++.++|...|++.++.+.. ....|+.+..-|....+...|.+-++..++-+.. |-..|-.+.++
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQa 407 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQA 407 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHH
Confidence 455666667788888899999999999986443 5678999999999999999999999999987543 78899999999
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccH
Q 011137 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436 (493)
Q Consensus 357 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~ 436 (493)
|.-.+-..-|+-+|++..... +.|...|.+|.++|.+.++.++|++.|+.....|-. +...+..|...|-+.++.++
T Consensus 408 Yeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~e- 484 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNE- 484 (559)
T ss_pred HHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHH-
Confidence 999999999999999998874 568899999999999999999999999999886533 56889999999999999888
Q ss_pred HHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 437 LVAGKLLIEMVD----RGFMPR--KFTFNRVLNGLLLIGNQGLAKEILRLQSR 483 (493)
Q Consensus 437 ~~A~~~~~~m~~----~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (493)
|.+.+++-++ .|...+ .....-|..-+.+.+++++|..+.....+
T Consensus 485 --Aa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 485 --AAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred --HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 7777776554 243322 22333355567788888888776655443
No 47
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.59 E-value=1.6e-11 Score=108.88 Aligned_cols=346 Identities=15% Similarity=0.135 Sum_probs=241.3
Q ss_pred hhChHHHHHHHHHhhcC-CCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 011137 80 WNHALKALHFFNILSYH-PTYAHS--PSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADR 156 (493)
Q Consensus 80 ~~~~~~A~~~~~~~~~~-~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 156 (493)
.+...+|+.|++-...+ |.+..+ ....+.+-..+.+.|+++.|+..|+.+.+.. |+..+-..++-++..-|+.++
T Consensus 250 kr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ek 327 (840)
T KOG2003|consen 250 KREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEK 327 (840)
T ss_pred hhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHH
Confidence 35667788888776544 222211 2345555556677788888888887776654 565554455555555677777
Q ss_pred HHHHHHHHHhCCC------------CCCHHHHHH----------------------------------------------
Q 011137 157 AVKIFLSMHEHGC------------RQSLNSFNT---------------------------------------------- 178 (493)
Q Consensus 157 a~~~~~~~~~~~~------------~~~~~~~~~---------------------------------------------- 178 (493)
..+.|.+|..... .|+....|.
T Consensus 328 mkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle 407 (840)
T KOG2003|consen 328 MKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLE 407 (840)
T ss_pred HHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHH
Confidence 7777776653211 111111110
Q ss_pred -----------------HHHHHHccCCHHHHHHHHHHhhcCCCC----------------------C----------cch
Q 011137 179 -----------------ILDLLCKEKKVEKAYNLFKVFRGKFKA----------------------D----------VIS 209 (493)
Q Consensus 179 -----------------ll~~~~~~g~~~~A~~~~~~~~~~~~~----------------------~----------~~~ 209 (493)
-..-|.+.|+++.|.++++.+.+.... + ..-
T Consensus 408 ~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr 487 (840)
T KOG2003|consen 408 SLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR 487 (840)
T ss_pred HHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc
Confidence 011267789999999988877543110 0 000
Q ss_pred HHH-----HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011137 210 YNV-----IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284 (493)
Q Consensus 210 ~~~-----l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 284 (493)
||. -.+.....|++++|.+.|++.....-.-. .....+.-.+-..|++++|+..|-++... ...+..+...+.
T Consensus 488 yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~-ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qia 565 (840)
T KOG2003|consen 488 YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT-EALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIA 565 (840)
T ss_pred cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH-HHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHH
Confidence 111 01112235889999999999987633322 23333445577889999999999877554 233777888899
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 011137 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364 (493)
Q Consensus 285 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 364 (493)
..|....+..+|++++.+.... ++.|......|...|-+.|+-.+|.+.+-+-.+. ++-+..+...|...|....-++
T Consensus 566 niye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~e 643 (840)
T KOG2003|consen 566 NIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSE 643 (840)
T ss_pred HHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHH
Confidence 9999999999999999887664 5567889999999999999999999887655443 4557788889999999999999
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcc
Q 011137 365 RALEFVGRMKDDECEPNVQTYNILIRYF-CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434 (493)
Q Consensus 365 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 434 (493)
+++.+|++..- +.|+..-|..++..| .+.|++.+|.++|++..+. ++-|......|++.+...|-.+
T Consensus 644 kai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 644 KAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh
Confidence 99999998865 489999998887655 5789999999999999876 6778889999998887776543
No 48
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.57 E-value=4.1e-11 Score=104.94 Aligned_cols=284 Identities=11% Similarity=0.082 Sum_probs=148.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcC-CCCCcchHHHHHHHHHhcCChhHHHHH
Q 011137 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEV 229 (493)
Q Consensus 151 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~ 229 (493)
.|+|.+|++...+-.+.+-. ....|..-..+--..|+.+.+-.++.+..+. ..++...+-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 67777777777776665522 2333444445556667777777777666543 223334455666666677777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHhccCCHHHHHHHHHH
Q 011137 230 LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV-------TYTTIVHGFGVVGEIKRARNVFDG 302 (493)
Q Consensus 230 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~ 302 (493)
++++.+.+.. +.........+|.+.|++.+...++..+.+.|.-.+.. +|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 7777666544 45566667777777777777777777777766543322 333333333333333333333333
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH
Q 011137 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382 (493)
Q Consensus 303 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 382 (493)
.... .+.+...-..++.-+.+.|+.++|.++..+..+++..|. ...+ -.+.+.++.+.-.+..+...+.. +-++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 3221 222333444445555555555555555555555443333 1111 12334444444444444443331 2233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHH
Q 011137 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447 (493)
Q Consensus 383 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~ 447 (493)
..+..|...|.+.+.+.+|...|+...+ ..|+..+|+.+..++.+.|+..+ |.+..++.+
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~---A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEE---AEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHH---HHHHHHHHH
Confidence 4455555555555555555555554444 23555555555555555555555 444444443
No 49
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=1.6e-09 Score=96.95 Aligned_cols=390 Identities=12% Similarity=0.067 Sum_probs=270.6
Q ss_pred ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 011137 82 HALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161 (493)
Q Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 161 (493)
+...|..+|+.+.... .-+...|-.-+..=.++++...|..++++....-+. -...|...+..=-..|+...|.++|
T Consensus 88 e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 88 EIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHHHHHHHhcccHHHHHHH
Confidence 4456888888876543 336667888888888888888898888888775322 2234555555555678888899999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC-CC-C
Q 011137 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR-GL-N 239 (493)
Q Consensus 162 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-g~-~ 239 (493)
+...+. .|+...|++.|+.=.+.+.++.|..+++++.- ..|++.+|-.....=.+.|....|..+|+...+. |- .
T Consensus 165 erW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~-~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 165 ERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL-VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 888764 68888999998888888888889888888764 3478888888888888888888888888877643 11 0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------------------------------------------CCCCC
Q 011137 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR-------------------------------------------KCEID 276 (493)
Q Consensus 240 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------------------------------------~~~~~ 276 (493)
-+...+.+....-.++..++.|.-+|+-.+.. .-+.|
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n 321 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence 11222333332222333333333333322221 12235
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-----H---HHhcCCHHHHHHHHHHHHhCCCCCC
Q 011137 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV--ATYNAMIQ-----V---LCKKDSVENAILVFEEMVGKGYMPN 346 (493)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~-----~---~~~~~~~~~a~~~~~~~~~~~~~~~ 346 (493)
-.+|--.++.-...|+.+...++|++.+.+ ++|-. ..|..-|- + -....+.+.+.++++..++. ++..
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHk 399 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHK 399 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcc
Confidence 666777777777888999999999988876 33321 12221111 1 13467888899999888874 3334
Q ss_pred hhhHHHHHHHH----HhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHH
Q 011137 347 STTYNVVIRGL----CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422 (493)
Q Consensus 347 ~~~~~~li~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 422 (493)
..||..+--.| .++.++..|.+++...+.. -|...++...|..=.+.++++.+..+|++..+-+ +-|..+|..
T Consensus 400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~k 476 (677)
T KOG1915|consen 400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSK 476 (677)
T ss_pred cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHH
Confidence 55665544333 3678889999999888854 6788899999999999999999999999999863 236778888
Q ss_pred HHHHHhccCCcccHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011137 423 LISSMFVRKKSDDLLVAGKLLIEMVDRG-FMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485 (493)
Q Consensus 423 li~~~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 485 (493)
....=...|+.+. |..+|.-.++.. +......|.+.|.--...|.++.|..+++.+.+..
T Consensus 477 yaElE~~LgdtdR---aRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 477 YAELETSLGDTDR---ARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHHHhhhHHH---HHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 8777777889998 889999888652 22235567777776677999999999998777643
No 50
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=4.4e-10 Score=100.92 Aligned_cols=220 Identities=14% Similarity=0.135 Sum_probs=152.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011137 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331 (493)
Q Consensus 252 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 331 (493)
+.-.|+.-.|..-|+..+..... +...|--+..+|....+.++....|++....+.. +..+|..-.+.+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 44467777888888888877544 3333666777788888888888888888776443 566777777777777888888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 011137 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411 (493)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 411 (493)
..=|++.+..... +...|..+..+.-+.+++++++..|++.++. ++--++.|+.....+...+++++|.+.|+..++.
T Consensus 414 ~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 8888888776322 4455555555566778888888888888776 4556788888888888888888888888887763
Q ss_pred CCCCC-------HHHH--HHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011137 412 VCLPN-------LDTY--NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR-KFTFNRVLNGLLLIGNQGLAKEILRLQ 481 (493)
Q Consensus 412 ~~~p~-------~~~~--~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 481 (493)
.|+ ...+ ..++..- =.+++.. |.+++++.++. .|. ...|.+|...-...|+.++|+++|+..
T Consensus 492 --E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~---a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 492 --EPREHLIIVNAAPLVHKALLVLQ-WKEDINQ---AENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred --ccccccccccchhhhhhhHhhhc-hhhhHHH---HHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 222 1111 1111111 1144444 88888888874 344 556777887888888888888888765
Q ss_pred Hh
Q 011137 482 SR 483 (493)
Q Consensus 482 ~~ 483 (493)
..
T Consensus 564 a~ 565 (606)
T KOG0547|consen 564 AQ 565 (606)
T ss_pred HH
Confidence 43
No 51
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=4.1e-09 Score=94.48 Aligned_cols=351 Identities=12% Similarity=0.097 Sum_probs=223.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CC-CCCHHHHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH-GC-RQSLNSFN 177 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~-~~~~~~~~ 177 (493)
.|+...|.+.|..=.+-+..+.|..+|++..-. .|++..|....+.=.++|....|..+|+...+. |- ..+...++
T Consensus 171 ~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfv 248 (677)
T KOG1915|consen 171 EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFV 248 (677)
T ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 446666666666666666666666666666543 256666666666666666666666666665532 10 01112233
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhcCCCCC--cchHHHHHHHHHhcCChhHHHHH--------HHHHHhCCCCCCHHHHHH
Q 011137 178 TILDLLCKEKKVEKAYNLFKVFRGKFKAD--VISYNVIANGWCLVKRTNKALEV--------LKEMVDRGLNPNLTTYNI 247 (493)
Q Consensus 178 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~--------~~~m~~~g~~p~~~~~~~ 247 (493)
+....=.++..++.|.-+|+-.....|.+ ...|......=-+-|+....... ++.+.+.+. .|-.+|--
T Consensus 249 aFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np-~nYDsWfd 327 (677)
T KOG1915|consen 249 AFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP-YNYDSWFD 327 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC-CCchHHHH
Confidence 33333333455555655555544444433 23344443333334444333222 233333332 26667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHH--------HhccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011137 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDV--VTYTTIVHG--------FGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317 (493)
Q Consensus 248 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 317 (493)
.++.-...|+.+...++|+..... ++|-. ..|.-.|.. -....|.+.+.++|+..++. ++....||..
T Consensus 328 ylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaK 405 (677)
T KOG1915|consen 328 YLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAK 405 (677)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHH
Confidence 777777889999999999998876 33321 122222222 13567888999999998884 5556666665
Q ss_pred HHHHH----HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 011137 318 MIQVL----CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393 (493)
Q Consensus 318 li~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 393 (493)
+--.| .+..++..|.+++...+.. -|-..+|...|..=.+.++++.+..+|++.++-+ +-+..+|......=.
T Consensus 406 iWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~ 482 (677)
T KOG1915|consen 406 IWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELET 482 (677)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHH
Confidence 54444 4678889999998887754 6778888888888888999999999999999876 557888888888888
Q ss_pred hcCCHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011137 394 DAGEIERGLELFEKMGSGVC-LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463 (493)
Q Consensus 394 ~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 463 (493)
..|+.+.|..+|+-...... .-....|...|+-=...|.++. |..+++.+++. .+...+|.++..
T Consensus 483 ~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ek---aR~LYerlL~r--t~h~kvWisFA~ 548 (677)
T KOG1915|consen 483 SLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEK---ARALYERLLDR--TQHVKVWISFAK 548 (677)
T ss_pred HhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHH---HHHHHHHHHHh--cccchHHHhHHH
Confidence 89999999999998887521 1224456666666667777777 88999998875 344446665554
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=99.50 E-value=1.1e-10 Score=115.03 Aligned_cols=249 Identities=14% Similarity=0.032 Sum_probs=144.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---------ccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCh
Q 011137 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLC---------KEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRT 223 (493)
Q Consensus 153 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 223 (493)
++++|++.|++..+.. +.+...|..+..++. ..+++++|...+++..+..|.+..++..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 3566777777766643 233444544444332 223467777777777666666677777777777777777
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 011137 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303 (493)
Q Consensus 224 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 303 (493)
++|...|++..+.+.. +...+..+...+...|++++|...+++..+.... +...+..++..+...|++++|+..++++
T Consensus 355 ~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 355 IVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 7777777777766433 4556666777777777777777777777776433 2223333344455567777777777776
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCC
Q 011137 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN-STTYNVVIRGLCHTGEMERALEFVGRMKDD-ECEPN 381 (493)
Q Consensus 304 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~ 381 (493)
.....+-+...+..+..++...|+.++|...+.++... .|+ ....+.+...|+..| +.|...++.+.+. ...+.
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~ 508 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDN 508 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhc
Confidence 65432223444566666777777777777777766544 222 233444444555555 3666666655443 11121
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 011137 382 VQTYNILIRYFCDAGEIERGLELFEKMGSG 411 (493)
Q Consensus 382 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 411 (493)
...+ +-..|.-.|+-+.+..+ +++.+.
T Consensus 509 ~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 509 NPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred CchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 1122 33333445565555544 666654
No 53
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.49 E-value=5.2e-10 Score=106.44 Aligned_cols=296 Identities=13% Similarity=0.162 Sum_probs=212.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 011137 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185 (493)
Q Consensus 106 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 185 (493)
.-....++...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+.+ +.+...|..+..+..-
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhh
Confidence 334456778899999999999886554 43445667788899999999999999999999876 4455556666666522
Q ss_pred c-----CCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 011137 186 E-----KKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRT-NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259 (493)
Q Consensus 186 ~-----g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 259 (493)
. .+.+....+|+.+....|.....-..-+. +....++ ..+..++..+..+|++ .+|+.+-..|....+.+
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~-~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLD-FLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAA 160 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhCccccchhHhhcc-cCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHH
Confidence 2 35677788888887766433333222222 2222233 3455667777888876 36666666676666666
Q ss_pred HHHHHHHHHHHC----C----------CCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 011137 260 EAWRFFLEMKKR----K----------CEIDV--VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS-VATYNAMIQVL 322 (493)
Q Consensus 260 ~a~~~~~~~~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~ 322 (493)
-..+++...... + -+|+. .++..+...|...|++++|++++++.++.. |+ +..|..-...+
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~Karil 238 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHH
Confidence 666666665433 1 12333 355667788999999999999999999863 44 67888889999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH--------HHHHHHHHHh
Q 011137 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT--------YNILIRYFCD 394 (493)
Q Consensus 323 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~ 394 (493)
-+.|++.+|.+.++..+..... |...=+..+..+.+.|+.++|.+++....+.+..|.... ......+|.+
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988654 777888888899999999999999999987764333222 2456778889
Q ss_pred cCCHHHHHHHHHHHhc
Q 011137 395 AGEIERGLELFEKMGS 410 (493)
Q Consensus 395 ~g~~~~a~~~~~~~~~ 410 (493)
.|++..|++.|..+.+
T Consensus 318 ~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLK 333 (517)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 9998888877766544
No 54
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=4.4e-10 Score=102.78 Aligned_cols=287 Identities=12% Similarity=0.049 Sum_probs=192.4
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011137 171 QSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250 (493)
Q Consensus 171 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 250 (493)
.+........+-+...+++.+..++++.+.+..|+....+-.-|.++...|+..+-..+=.++.+.-+. ...+|-.+.-
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~ 320 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGC 320 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHH
Confidence 344444555555666777777777777777777777777777777777777777777777777766433 5667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011137 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330 (493)
Q Consensus 251 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 330 (493)
.|.-.|+.++|.+.|.+....+.. =...|-...+.|...|.-++|+..|....+. ++-....+--+.--|.+.+..+.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 777778888888888776655332 2446777777777778888887777766553 11122223334445667777888
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCC----CCHHHHHHHHHHHHhcCCHHHHHHH
Q 011137 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD--ECE----PNVQTYNILIRYFCDAGEIERGLEL 404 (493)
Q Consensus 331 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~~~~l~~~~~~~g~~~~a~~~ 404 (493)
|.+.|.+..... +.|+..++-+.-.....+.+.+|..+|+..+.. .+. --..+++.|..+|.+.+.+++|+..
T Consensus 399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 888877776552 235666666665555667777888777776522 001 1233567777888888888888888
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011137 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467 (493)
Q Consensus 405 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 467 (493)
+++.... .+.|..++.++.-.|...|+++. |+..|.+.+- +.|+..+...+++.+..
T Consensus 478 ~q~aL~l-~~k~~~~~asig~iy~llgnld~---Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 478 YQKALLL-SPKDASTHASIGYIYHLLGNLDK---AIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHc-CCCchhHHHHHHHHHHHhcChHH---HHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 8877765 34477777777777777888887 8888887774 57777777776664433
No 55
>PRK12370 invasion protein regulator; Provisional
Probab=99.48 E-value=3.1e-11 Score=118.79 Aligned_cols=150 Identities=9% Similarity=-0.006 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011137 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337 (493)
Q Consensus 258 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 337 (493)
+++|...+++..+.+.. +...+..+...+...|++++|+..|++..+.+. .+...+..+...+...|++++|...+++
T Consensus 320 ~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 320 MIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55666666665555332 455555555555566666666666666655432 2344555555566666666666666666
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 338 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
..+.+.. +...+..++..+...|++++|...++++.....+-+...+..+..++...|+.++|...++++..
T Consensus 398 Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 398 CLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 6555322 11122223333444556666666666655432122333455555555666666666666655544
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.46 E-value=8.5e-11 Score=103.01 Aligned_cols=198 Identities=13% Similarity=0.088 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHH
Q 011137 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGW 217 (493)
Q Consensus 138 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (493)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++.....+.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 3445555555555666666666665555432 233444555555555555555555555555444444444555555555
Q ss_pred HhcCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 011137 218 CLVKRTNKALEVLKEMVDRGLN-PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296 (493)
Q Consensus 218 ~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 296 (493)
...|++++|.+.+++..+.... .....+..+..++...|++++|...+++..+.... +...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555555543211 12233444445555555555555555555444221 334444455555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338 (493)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 338 (493)
...+++..+. .+.+...+..+...+...|+.++|..+.+.+
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555554443 1223333444444444555555555544443
No 57
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=8.8e-10 Score=99.02 Aligned_cols=354 Identities=15% Similarity=0.097 Sum_probs=248.2
Q ss_pred ChHHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH-
Q 011137 82 HALKALHFFNILSYHPTYAHS-PSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK- 159 (493)
Q Consensus 82 ~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~- 159 (493)
..+.|++++.|+.+. .|+ +.-|......|...|+|+++.+.-....+.++ .-+.++..-.+++-..|++++|+.
T Consensus 130 kY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P-~Y~KAl~RRA~A~E~lg~~~eal~D 205 (606)
T KOG0547|consen 130 KYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNP-DYVKALLRRASAHEQLGKFDEALFD 205 (606)
T ss_pred cHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCc-HHHHHHHHHHHHHHhhccHHHHHHh
Confidence 358899999999765 355 78899999999999999999887777766532 123455555556666666665531
Q ss_pred ---------------------HHHHH--------Hh-CC--CCCCHHHHHHHHHHHHc---------c------------
Q 011137 160 ---------------------IFLSM--------HE-HG--CRQSLNSFNTILDLLCK---------E------------ 186 (493)
Q Consensus 160 ---------------------~~~~~--------~~-~~--~~~~~~~~~~ll~~~~~---------~------------ 186 (493)
+++.. .+ .+ .-|+....++....+.. .
T Consensus 206 ~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~ 285 (606)
T KOG0547|consen 206 VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALE 285 (606)
T ss_pred hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHH
Confidence 11111 01 11 12333333332222211 0
Q ss_pred ----C---CHHHHHHHHHHhhcC--CCC--C---------cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 011137 187 ----K---KVEKAYNLFKVFRGK--FKA--D---------VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246 (493)
Q Consensus 187 ----g---~~~~A~~~~~~~~~~--~~~--~---------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 246 (493)
+ .+..|.+.+.+-... ..+ + ..+.....-.+.-.|+...|..-|+..+.....++ ..|-
T Consensus 286 ~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI 364 (606)
T KOG0547|consen 286 ALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYI 364 (606)
T ss_pred HHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hHHH
Confidence 0 122222222211100 111 1 22333333445668999999999999998765533 3388
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011137 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326 (493)
Q Consensus 247 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 326 (493)
.+...|....+.++.++.|++..+.+.. ++.+|..-...+.-.+++++|..-|++.+..... +...|-.+.-+..+.+
T Consensus 365 ~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~ 442 (606)
T KOG0547|consen 365 KRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQH 442 (606)
T ss_pred HHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHH
Confidence 8889999999999999999999998655 7888989999999999999999999999886332 5667777777778899
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-------CCCHHHHHHHHHHHHhcCCHH
Q 011137 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC-------EPNVQTYNILIRYFCDAGEIE 399 (493)
Q Consensus 327 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~ 399 (493)
.+++++..|++..++ ++-.+..|+.....+...++++.|.+.|+..++... .+.+.+.-.++..-.+ +++.
T Consensus 443 k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~ 520 (606)
T KOG0547|consen 443 KIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-EDIN 520 (606)
T ss_pred HHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hhHH
Confidence 999999999999987 444678999999999999999999999999887521 1222333334443344 8999
Q ss_pred HHHHHHHHHhcCCCCC-CHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHC
Q 011137 400 RGLELFEKMGSGVCLP-NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449 (493)
Q Consensus 400 ~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~ 449 (493)
.|..++++..+. .| ....|..|...-.+.|+.++ |+++|++....
T Consensus 521 ~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~e---AielFEksa~l 566 (606)
T KOG0547|consen 521 QAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDE---AIELFEKSAQL 566 (606)
T ss_pred HHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHH
Confidence 999999999985 34 45689999999999999999 99999987753
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.45 E-value=1.1e-10 Score=102.38 Aligned_cols=198 Identities=11% Similarity=0.076 Sum_probs=106.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 011137 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288 (493)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 288 (493)
.+..+...+...|++++|.+.+++..+.... +...+..+...+...|++++|.+.+++..+.... +...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Confidence 3444455555555555555555555443221 3344455555555555555555555555544322 3444555555555
Q ss_pred ccCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011137 289 VVGEIKRARNVFDGMVNGGV-LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367 (493)
Q Consensus 289 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 367 (493)
..|++++|.+.+++...... ......+..+...+...|++++|...+++..+.... +...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555554311 112334445555566666666666666666554221 3445555666666666666666
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
..+++.... .+.+...+..++..+...|+.++|..+.+.+..
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 666666554 233455555566666666666666666665543
No 59
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=3.7e-10 Score=103.24 Aligned_cols=286 Identities=11% Similarity=0.075 Sum_probs=230.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 011137 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIAN 215 (493)
Q Consensus 136 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 215 (493)
-+........+.+...+++.+..++++.+.+.. ++....+..-|.++...|+..+-..+=.++....|....+|..+.-
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 455666667777888999999999999998864 6677778888889999999887777777788888889999999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 011137 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295 (493)
Q Consensus 216 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 295 (493)
-|...|+..+|.+.|.+....+.. =...|......++-.|..|.|+..+...-+.-.. .-.-+--+.--|.+.++.+.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHH
Confidence 999999999999999998654322 2357888899999999999999999887765111 11112234456788999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C--CCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011137 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK----G--YMPNSTTYNVVIRGLCHTGEMERALEF 369 (493)
Q Consensus 296 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~~~~~~a~~~ 369 (493)
|.+.|.+.... .+.|....+.+.-.....+.+.+|..+|+..... + ..-...+++.|..+|.+.+.+++|+..
T Consensus 399 Ae~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 99999998875 3347778888888888899999999999887632 1 112445688889999999999999999
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHh
Q 011137 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428 (493)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 428 (493)
++..+... +.+..++.++.-.|...|+++.|.+.|.+..- +.||..+-..++..+.
T Consensus 478 ~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 478 YQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 99999875 66899999999999999999999999999887 5788777777666544
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.44 E-value=3e-11 Score=102.77 Aligned_cols=228 Identities=13% Similarity=0.112 Sum_probs=106.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 011137 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187 (493)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 187 (493)
.+...|.+.|-+.+|.+.++.-...- |-+.||..+-+.|.+..++..|+.+|.+-.+. ++-++....-....+-..+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHH
Confidence 34444455555555555554444332 34445555555555555555555555544442 1222222233333444445
Q ss_pred CHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011137 188 KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267 (493)
Q Consensus 188 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 267 (493)
+.++|.++|+...+..+.++.+...+..+|.-.++++.|+.+|+++.+.|+. +...|+.+.-+|.-.+++|-++.-|..
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 5555555555544444444444444444455555555555555555555544 444455555555555555555555544
Q ss_pred HHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011137 268 MKKRKCEID--VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340 (493)
Q Consensus 268 ~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 340 (493)
....-..++ ..+|..+.......||+..|.+.|+-....+. .....++.|.-.-.+.|++++|..++.....
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 443322111 23344444444445555555555554444322 1334444444444455555555555544443
No 61
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.42 E-value=1e-09 Score=104.47 Aligned_cols=296 Identities=14% Similarity=0.145 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHh
Q 011137 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCL 219 (493)
Q Consensus 140 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 219 (493)
..--....+...|++++|++.++.-... +.............+.+.|+.++|..++..+..+.|.|..-|..+..+..-
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhh
Confidence 3334455567788888888888765543 334455666677778888888888888888877766666666666666522
Q ss_pred c-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 011137 220 V-----KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI-EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293 (493)
Q Consensus 220 ~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 293 (493)
. .+.+...++|+++...- |.......+.-.+.....+ ..+..++..+...|++ .+++.|-..|....+.
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKA 159 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHH
Confidence 2 24566677777776553 3333333232222222222 2344555566666654 3455666666655555
Q ss_pred HHHHHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHH
Q 011137 294 KRARNVFDGMVNG----G----------VLPSV--ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN-STTYNVVIRG 356 (493)
Q Consensus 294 ~~A~~~~~~~~~~----~----------~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~ 356 (493)
+-..+++...... + -.|+. .++..+...|...|++++|++++++.++.. |+ +..|..-.+.
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~Kari 237 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHH
Confidence 5555555554322 0 12333 244556677777788888888887777763 33 5566667777
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHH--------HHHHHHHh
Q 011137 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY--------NILISSMF 428 (493)
Q Consensus 357 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~--------~~li~~~~ 428 (493)
+-+.|++.+|.+.++...... .-|..+-+-.+..+.++|++++|.+++....+.+..|-...+ .....+|.
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 777788888888877777765 336666666777777778888888777777665443222111 12234455
Q ss_pred ccCCcccHHHHHHHHHHHH
Q 011137 429 VRKKSDDLLVAGKLLIEMV 447 (493)
Q Consensus 429 ~~~~~~~~~~A~~~~~~m~ 447 (493)
+.|++.. |++.|....
T Consensus 317 r~~~~~~---ALk~~~~v~ 332 (517)
T PF12569_consen 317 RQGDYGL---ALKRFHAVL 332 (517)
T ss_pred HHhhHHH---HHHHHHHHH
Confidence 5555555 555555544
No 62
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.41 E-value=1.8e-08 Score=93.91 Aligned_cols=400 Identities=16% Similarity=0.141 Sum_probs=264.0
Q ss_pred HHHHHHHHHh-hChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 011137 71 LVDQIIKRLW-NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149 (493)
Q Consensus 71 ~~~~~l~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 149 (493)
++.+++.-.- ......+.+.+.+.+. ++-..++.....-.+...|+-++|....+.-.+..+ -+...|..+.-.+.
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHh
Confidence 3444444332 3456677777777663 344566666666667778889999888887776544 56778888888888
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHH
Q 011137 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEV 229 (493)
Q Consensus 150 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 229 (493)
..+++++|++.|......+ +.+...|.-+.-.-.+.|+++.....-....+-.+.....|..++.++.-.|+...|..+
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999998875 566777777666666777777776666666555555677888888888889999999999
Q ss_pred HHHHHhCC-CCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 011137 230 LKEMVDRG-LNPNLTTYNIVL------KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302 (493)
Q Consensus 230 ~~~m~~~g-~~p~~~~~~~l~------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 302 (493)
+++..+.. ..|+...|.... ....+.|..++|.+.+...... +.-....-.+-...+.+.+++++|..++..
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 98887654 245555554332 3345677778887777665554 221333344556677888889999999888
Q ss_pred HHHCCCCCCHHHHHHHHH-HHHhcCCHHHHH-HHHHH----------------------------------HHhCCCCCC
Q 011137 303 MVNGGVLPSVATYNAMIQ-VLCKKDSVENAI-LVFEE----------------------------------MVGKGYMPN 346 (493)
Q Consensus 303 ~~~~~~~~~~~~~~~li~-~~~~~~~~~~a~-~~~~~----------------------------------~~~~~~~~~ 346 (493)
++.. .||...|..... ++.+-.+.-++. .+|.. +.+.|+++
T Consensus 245 Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~- 321 (700)
T KOG1156|consen 245 LLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS- 321 (700)
T ss_pred HHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc-
Confidence 8875 355555544333 332222222222 33333 33333322
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhh----hCC----------CCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 347 STTYNVVIRGLCHTGEMERALEFVGRMK----DDE----------CEPNVQT--YNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 347 ~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~----------~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
++..+...|-.....+-..++.-.+. ..| -+|.... +-.++..|-+.|+++.|..+++....
T Consensus 322 --vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId 399 (700)
T KOG1156|consen 322 --VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID 399 (700)
T ss_pred --hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 23333333322111111111111111 111 1445444 45677888999999999999999998
Q ss_pred CCCCCC-HHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 011137 411 GVCLPN-LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGR 486 (493)
Q Consensus 411 ~~~~p~-~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 486 (493)
+ .|+ +..|..-.+.+...|..++ |..++++..+.+ .+|+..-..-.+...++.+.++|.+++..+.+.|.
T Consensus 400 H--TPTliEly~~KaRI~kH~G~l~e---Aa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 400 H--TPTLIELYLVKARIFKHAGLLDE---AAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred c--CchHHHHHHHHHHHHHhcCChHH---HHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 5 454 4566666788899999999 999999999875 57776666777788899999999999999988875
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=7.3e-11 Score=100.43 Aligned_cols=232 Identities=12% Similarity=0.057 Sum_probs=179.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011137 175 SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254 (493)
Q Consensus 175 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 254 (493)
--+-+.++|.+.|.+.+|.+.|+..... .|-+.||..|.+.|.+..+++.|+.++.+-.+.- +-|+....-+.+.+-.
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q-~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ-FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc-CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHH
Confidence 3366778888888888888888766543 4567788888888888888888888888877652 2244444567778888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011137 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334 (493)
Q Consensus 255 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 334 (493)
.++.++|.++++...+.. +.++.....+...|.-.++++.|+.+|+++.+.|+. +...|+.+.-+|.-.++++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 888888999988888773 336677777777788888889999999988888875 777888888888888888888888
Q ss_pred HHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 011137 335 FEEMVGKGYMPN--STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411 (493)
Q Consensus 335 ~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 411 (493)
|.+....--.|+ ...|..+.......||+..|.+.|+-....+ .-+...++.|.-.-.+.|++++|..+++.....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 887776533333 3467677777778889999999988888765 446778888888888899999999988887763
No 64
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.36 E-value=8.6e-11 Score=112.54 Aligned_cols=274 Identities=12% Similarity=0.139 Sum_probs=165.2
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCC
Q 011137 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF 203 (493)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 203 (493)
.++-.+...|+.|+..||..+|..|+..|+.+.|- +|.-|.-...+.+...++.++......++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35556667777788888888888888888777776 7777776666666777777777777777766554
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHH
Q 011137 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR-KCEIDVVTYTT 282 (493)
Q Consensus 204 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~ 282 (493)
.|...+|..|..+|...|+... ++..++ -.-.+...+...|.-.....++..+.-. +.-||.. .
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n 144 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---N 144 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---H
Confidence 5667777777777777777765 222222 1122334445555555555555443221 2333332 2
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 011137 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK-DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361 (493)
Q Consensus 283 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 361 (493)
.+....-.|.++.+++++..+....-.. .+..+++-+... ..+++-..+.....+ .|++.+|..++.+-.-.|
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~~---p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag 218 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWNA---PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAG 218 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcccccc---hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcC
Confidence 3334444555666666655442211100 111112222221 222332222222222 467778888888777788
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCC
Q 011137 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432 (493)
Q Consensus 362 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 432 (493)
+.+.|..++.+|.+.|++.+..-|-.|+-+ .|+..-+..+++-|.+.|+.|+..|+...+..+..+|.
T Consensus 219 ~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 219 DVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred chhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 888888888888888877777766666655 67777777777888888888888887777766666443
No 65
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.35 E-value=3.5e-10 Score=108.46 Aligned_cols=246 Identities=12% Similarity=0.065 Sum_probs=165.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 011137 96 HPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS 175 (493)
Q Consensus 96 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 175 (493)
..|..|+..+|.++|.-|+..|+.+.|- +|.-|.-...+.+...|+.++.+....++.+.+. .|...+
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDt 85 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADT 85 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhH
Confidence 3478889999999999999999999998 9999998888889999999999988888887775 578899
Q ss_pred HHHHHHHHHccCCHHH---HHHHHHHhhcCCCCC----cchH---------------HHHHHHHHhcCChhHHHHHHHHH
Q 011137 176 FNTILDLLCKEKKVEK---AYNLFKVFRGKFKAD----VISY---------------NVIANGWCLVKRTNKALEVLKEM 233 (493)
Q Consensus 176 ~~~ll~~~~~~g~~~~---A~~~~~~~~~~~~~~----~~~~---------------~~l~~~~~~~~~~~~A~~~~~~m 233 (493)
|..|..+|...||+.. ..+.+..+...+.+. ..-| ...+......|-++.+++++..+
T Consensus 86 yt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999654 333222222211111 0111 11222222334444444444433
Q ss_pred HhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH
Q 011137 234 VDRG-LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312 (493)
Q Consensus 234 ~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 312 (493)
.... ..|..+ .++-+... .....++........-.++..+|..+++.-...|+.+.|..++.+|.+.|.+.+.
T Consensus 166 Pvsa~~~p~~v----fLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 166 PVSAWNAPFQV----FLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred CcccccchHHH----HHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 2111 111111 23333222 2233344433333222578888888888888888888888888888888888777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 011137 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362 (493)
Q Consensus 313 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 362 (493)
.-|-.|+-+ .++...+..+++-|.+.|+.|+..|+..-+..+...|.
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 766666654 77788888888888888888888888877777777544
No 66
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=3.2e-08 Score=85.59 Aligned_cols=387 Identities=11% Similarity=0.075 Sum_probs=223.6
Q ss_pred hChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011137 81 NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160 (493)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 160 (493)
++..-|+.+.+....... .-...+---+...+.+.|++++|...|..+.... .++...+..+.-++.-.|.+.+|..+
T Consensus 36 rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~ 113 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSI 113 (557)
T ss_pred ccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHH
Confidence 456678887777643221 1112233334556678899999999999887753 46777777777777778889998887
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 011137 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240 (493)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 240 (493)
-....+ ++-.-..+...--+.|+-++-..+-+.+.. ...---.|.......-.+.+|++++......+ |
T Consensus 114 ~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ 182 (557)
T KOG3785|consen 114 AEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--P 182 (557)
T ss_pred HhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--h
Confidence 655432 333334445555566776665554444433 22333445555555667899999999988653 3
Q ss_pred CHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-----------
Q 011137 241 NLTTYNI-VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV----------- 308 (493)
Q Consensus 241 ~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----------- 308 (493)
+-...|. +.-+|.+..-++-+.++++-..+. ++-++...|....-..+.=+-..|++-.+++...+.
T Consensus 183 ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~r 261 (557)
T KOG3785|consen 183 EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCR 261 (557)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHH
Confidence 4444443 455677888888888998888776 333445555444333222111122222222211100
Q ss_pred ---------------CC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH------------
Q 011137 309 ---------------LP-----SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG------------ 356 (493)
Q Consensus 309 ---------------~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~------------ 356 (493)
-| -...-..|+--|.+.+++.+|..+.+++.-. .|-......++.+
T Consensus 262 HNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHl 339 (557)
T KOG3785|consen 262 HNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHL 339 (557)
T ss_pred cCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHH
Confidence 00 0112233455577888888888887765322 2222222222211
Q ss_pred -----------------------------HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011137 357 -----------------------------LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407 (493)
Q Consensus 357 -----------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 407 (493)
+.-..++++.+-++..+..--...|... -.+.++++..|++.+|+++|-.
T Consensus 340 KiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~eaEelf~~ 418 (557)
T KOG3785|consen 340 KIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVEAEELFIR 418 (557)
T ss_pred HHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHHHHHHHhh
Confidence 1111122333333333322211112222 3477888899999999999988
Q ss_pred HhcCCCCCCHHHHHH-HHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcC
Q 011137 408 MGSGVCLPNLDTYNI-LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV-LNGLLLIGNQGLAKEILRLQSRCG 485 (493)
Q Consensus 408 ~~~~~~~p~~~~~~~-li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~g 485 (493)
+....++ |..+|.. |.++|.+.++++- |+.++-++. -..+..+...+ ...|.+.+.+--|-+.|+++.+..
T Consensus 419 is~~~ik-n~~~Y~s~LArCyi~nkkP~l---AW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 419 ISGPEIK-NKILYKSMLARCYIRNKKPQL---AWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred hcChhhh-hhHHHHHHHHHHHHhcCCchH---HHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 8765444 5556655 5567888888887 666555443 23334444444 447999999999999999888876
Q ss_pred CCCccc
Q 011137 486 RLPRQF 491 (493)
Q Consensus 486 ~~~~~~ 491 (493)
-.|..|
T Consensus 492 P~pEnW 497 (557)
T KOG3785|consen 492 PTPENW 497 (557)
T ss_pred CCcccc
Confidence 666544
No 67
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.33 E-value=1.7e-09 Score=101.80 Aligned_cols=237 Identities=19% Similarity=0.154 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHC-----CCC-
Q 011137 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKR-----KC-EIDVV-TYTTIVHGFGVVGEIKRARNVFDGMVNG-----GVL- 309 (493)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~- 309 (493)
.+...+...|...|+++.|+.+++...+. |. .+... ..+.+...|...+++++|..+|+++... |-.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45566788888888888888888776654 21 12222 2334667788888999998888887642 221
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCCh-hhHHHHHHHHHhcCCHHHHHHHHHHhhhC---CC
Q 011137 310 P-SVATYNAMIQVLCKKDSVENAILVFEEMVGK-----GY-MPNS-TTYNVVIRGLCHTGEMERALEFVGRMKDD---EC 378 (493)
Q Consensus 310 ~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~ 378 (493)
| -..+++.|...|.+.|++++|..+++...+- |. .|.. ..++.+...|+..+++++|..+++...+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 1346777788899999998888877765432 11 1222 24566677788889999999988876543 11
Q ss_pred CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC-----C-CC-CCHHHHHHHHHHHhccCCcccHHHHHHHHHHHH
Q 011137 379 EP----NVQTYNILIRYFCDAGEIERGLELFEKMGSG-----V-CL-PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447 (493)
Q Consensus 379 ~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~-p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~ 447 (493)
.+ -..+++.|...|...|++++|.++++++... | .. -....++.+...|.+.++.++ |.++|.+..
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~---a~~l~~~~~ 436 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEE---AEQLFEEAK 436 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccch---HHHHHHHHH
Confidence 12 2457899999999999999999999988653 1 11 235567888889999999998 777777644
Q ss_pred H----CCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011137 448 D----RGF-MPR-KFTFNRVLNGLLLIGNQGLAKEILRLQS 482 (493)
Q Consensus 448 ~----~g~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 482 (493)
. .|. .|+ ..+|..|...|...|+++.|.++.+...
T Consensus 437 ~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 437 DIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2 221 233 5678889999999999999999998665
No 68
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.32 E-value=3.5e-07 Score=85.45 Aligned_cols=146 Identities=11% Similarity=0.112 Sum_probs=91.3
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 87 LHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE 166 (493)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 166 (493)
.+.|+.+...-........|...+......+-++.+..+|++..+. ++..-.-.+..++..+++++|-+.+.....
T Consensus 122 R~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln 197 (835)
T KOG2047|consen 122 RRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLN 197 (835)
T ss_pred HHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcC
Confidence 3444444333333444556777777777778888888888887764 444566677788888999999888887763
Q ss_pred CC------CCCCHHHHHHHHHHHHccCCHHHHHH---HHHHhhcCCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011137 167 HG------CRQSLNSFNTILDLLCKEKKVEKAYN---LFKVFRGKFKADV-ISYNVIANGWCLVKRTNKALEVLKEMVDR 236 (493)
Q Consensus 167 ~~------~~~~~~~~~~ll~~~~~~g~~~~A~~---~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 236 (493)
.. .+.+...|.-+.+...+..+.-.... +++.+..+++... ..|+.|.+-|.+.|.+++|..+|++.++.
T Consensus 198 ~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 198 QDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred chhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 21 13445566666666665544333222 2333333332221 35778888888888888888888776653
No 69
>PF13041 PPR_2: PPR repeat family
Probab=99.31 E-value=5.8e-12 Score=79.55 Aligned_cols=50 Identities=38% Similarity=0.821 Sum_probs=31.9
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011137 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254 (493)
Q Consensus 205 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 254 (493)
||..+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 45666666666666666666666666666666666666666666666553
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.1e-07 Score=84.18 Aligned_cols=269 Identities=16% Similarity=0.097 Sum_probs=156.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHH
Q 011137 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVI 213 (493)
Q Consensus 134 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 213 (493)
.+.++.....+...+...|+.++|+..|++....+ +-+..........+.+.|+.+....+...+-....-....|..-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~ 306 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVH 306 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhh
Confidence 34456666667777777777777777777665432 11222222223334556666665555555444333344445555
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 011137 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293 (493)
Q Consensus 214 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 293 (493)
+......++++.|+.+-++.++.... +...|-.-.+.+...|+.++|.-.|....... +.+...|.-|+++|...|.+
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 55555666777777777766655433 44555555566666777777777777666552 23566777777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHH
Q 011137 294 KRARNVFDGMVNGGVLPSVATYNAMI-QVLC-KKDSVENAILVFEEMVGKGYMPN-STTYNVVIRGLCHTGEMERALEFV 370 (493)
Q Consensus 294 ~~A~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~ 370 (493)
.+|.-+-+...+. ...+..+...+. ..+. ....-++|.++++..... .|+ ....+.+...|...|..+.++.++
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 7766555544332 222344444332 2222 222345666666665554 333 234455556666777777777777
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 371 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
++.... .||....+.|.+.+...+.+++|++.|.....
T Consensus 462 e~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 462 EKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 776654 56777777777777777777777777777666
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=3.6e-08 Score=87.07 Aligned_cols=286 Identities=12% Similarity=0.054 Sum_probs=220.3
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011137 84 LKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163 (493)
Q Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 163 (493)
..|...|-.+.....++.+......+...+...|+..+|+..|+.....++ -+........-.+.+.|+.+....+...
T Consensus 213 s~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dp-y~i~~MD~Ya~LL~~eg~~e~~~~L~~~ 291 (564)
T KOG1174|consen 213 SDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANP-DNVEAMDLYAVLLGQEGGCEQDSALMDY 291 (564)
T ss_pred chhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCCh-hhhhhHHHHHHHHHhccCHhhHHHHHHH
Confidence 345555555666667788999999999999999999999999999887643 2333333344456678999988888887
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 011137 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243 (493)
Q Consensus 164 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 243 (493)
+.... ..+..-|-.-+..+....+++.|+.+-++.....+.+...|-.-...+...|++++|.-.|+......+ -+..
T Consensus 292 Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~ 369 (564)
T KOG1174|consen 292 LFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLE 369 (564)
T ss_pred HHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHH
Confidence 77543 234444555556667788999999998887776677888888888889999999999999999886532 2678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHh-ccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 011137 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV-HGFG-VVGEIKRARNVFDGMVNGGVLPS-VATYNAMIQ 320 (493)
Q Consensus 244 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~ 320 (493)
.|..++.+|...|++.+|.-+-+...+. .+.+..+.+.+. ..+. ...--++|.+++++.... .|+ ....+.+..
T Consensus 370 ~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AE 446 (564)
T KOG1174|consen 370 IYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAE 446 (564)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHH
Confidence 9999999999999999998887776654 333555555442 2222 222357899999887764 454 446677888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 011137 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377 (493)
Q Consensus 321 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 377 (493)
.+...|..+.+..+++..... .||....+.|.+.+...+.+.+|++.|......+
T Consensus 447 L~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 447 LCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 899999999999999998875 6899999999999999999999999999998763
No 72
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.27 E-value=6.8e-08 Score=90.54 Aligned_cols=307 Identities=10% Similarity=0.003 Sum_probs=180.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSL-GPTQ-KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT- 178 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~- 178 (493)
.+..|..+...+...|+.+.+...+....+... ..+. .........+...|++++|.+.+++..+.. +.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~ 83 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLH 83 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHh
Confidence 455667777777777878777666666544322 1222 222333445667889999999999888753 344444442
Q ss_pred --HHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011137 179 --ILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256 (493)
Q Consensus 179 --ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 256 (493)
........+..+.+.+.++......+........+...+...|++++|.+.+++..+.... +...+..+..++...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g 162 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcC
Confidence 1222222455555555555422333333345556667888899999999999999887543 5667788888889999
Q ss_pred CHHHHHHHHHHHHHCCCC-CC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCCHH
Q 011137 257 QIEEAWRFFLEMKKRKCE-ID--VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV-LPSVATY-N--AMIQVLCKKDSVE 329 (493)
Q Consensus 257 ~~~~a~~~~~~~~~~~~~-~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~~~~~ 329 (493)
++++|...+++....... ++ ...|..+...+...|++++|..++++...... .+..... + .++.-+...|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 999999999888775321 22 23455678888899999999999998764322 1111111 1 2223333344332
Q ss_pred HHHHH--H-HHHHhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC--------CCHHHHHHHHHHHHhcCC
Q 011137 330 NAILV--F-EEMVGKGY-MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE--------PNVQTYNILIRYFCDAGE 397 (493)
Q Consensus 330 ~a~~~--~-~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~ 397 (493)
.+... + ........ ............++...|+.+.|..+++.+...... ..........-++...|+
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 22222 1 11111100 111122224556677788888888888887653211 012222233334557888
Q ss_pred HHHHHHHHHHHhc
Q 011137 398 IERGLELFEKMGS 410 (493)
Q Consensus 398 ~~~a~~~~~~~~~ 410 (493)
.++|.+.+.....
T Consensus 323 ~~~A~~~L~~al~ 335 (355)
T cd05804 323 YATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877665
No 73
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=1.5e-11 Score=77.61 Aligned_cols=49 Identities=45% Similarity=0.752 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHh
Q 011137 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428 (493)
Q Consensus 380 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 428 (493)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444455555555555555555555555554445555555555544443
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.27 E-value=1.1e-08 Score=92.38 Aligned_cols=94 Identities=11% Similarity=-0.027 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 011137 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289 (493)
Q Consensus 210 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 289 (493)
|..+...+...|+.++|...|++..+.... +...|+.+...+...|++++|...|+...+.... +..+|..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 444444444455555555555554443322 3444555555555555555555555555443222 33444444444555
Q ss_pred cCCHHHHHHHHHHHHH
Q 011137 290 VGEIKRARNVFDGMVN 305 (493)
Q Consensus 290 ~g~~~~A~~~~~~~~~ 305 (493)
.|++++|++.|++..+
T Consensus 145 ~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 145 GGRYELAQDDLLAFYQ 160 (296)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5555555555555444
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.27 E-value=2.8e-09 Score=100.28 Aligned_cols=235 Identities=16% Similarity=0.156 Sum_probs=131.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhcC-------CCCCcch-HHHHHHHHHhcCChhHHHHHHHHHHhC-----CC-CC
Q 011137 175 SFNTILDLLCKEKKVEKAYNLFKVFRGK-------FKADVIS-YNVIANGWCLVKRTNKALEVLKEMVDR-----GL-NP 240 (493)
Q Consensus 175 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~m~~~-----g~-~p 240 (493)
+...+...|...|+++.|+.+++..... ..+.+.+ .+.+...|...+++++|..+|+++... |- .|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3334555555555555555555433221 1222222 233555566666666666666665421 11 11
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-CC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHC---CCC
Q 011137 241 N-LTTYNIVLKGYFRAGQIEEAWRFFLEMKKR-----KCE-ID-VVTYTTIVHGFGVVGEIKRARNVFDGMVNG---GVL 309 (493)
Q Consensus 241 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~ 309 (493)
. ..+++.|...|.+.|++++|...++...+. +.. +. ...++.+...++..+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 1 244555666666666666666555544332 111 11 223444555666667777777666654321 111
Q ss_pred CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC--CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC--
Q 011137 310 PS----VATYNAMIQVLCKKDSVENAILVFEEMVGK----GY--MP-NSTTYNVVIRGLCHTGEMERALEFVGRMKDD-- 376 (493)
Q Consensus 310 ~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-- 376 (493)
++ ..+++.|...|...|++++|.+++++.+.. +. .+ ....++.+...|.+.+++.+|.++|.+...-
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 346777777888888888888877766543 11 11 2345667777777777777777777664321
Q ss_pred --C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 011137 377 --E--CEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409 (493)
Q Consensus 377 --~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 409 (493)
| .+-...+|..|...|.+.|++++|.++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2 12234577888888888888888888877665
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.26 E-value=7e-07 Score=83.64 Aligned_cols=127 Identities=17% Similarity=0.250 Sum_probs=82.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 011137 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPN-VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427 (493)
Q Consensus 349 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 427 (493)
++..++..+-+.|+++.|+.+++..+.+ .|+ ++.|..=...+...|++++|..++++..+.+ .+|...-.--+.-.
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYm 449 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHH
Confidence 3445667777888888888888888876 344 4456566677888888998888888887753 24544444455555
Q ss_pred hccCCcccHHHHHHHHHHHHHCCCCCCHHH--------HHHH--HHHHHHcCCHHHHHHHHHHHHh
Q 011137 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFT--------FNRV--LNGLLLIGNQGLAKEILRLQSR 483 (493)
Q Consensus 428 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~--------~~~l--~~~~~~~g~~~~a~~~~~~~~~ 483 (493)
.+.++.++ |.++.....+.|. +... |..+ ..+|.++|++.+|++-+....+
T Consensus 450 LrAn~i~e---A~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 450 LRANEIEE---AEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHccccHH---HHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 66777777 7777777776653 2221 2222 2267777777777665554433
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.25 E-value=1.4e-08 Score=91.66 Aligned_cols=218 Identities=10% Similarity=-0.040 Sum_probs=126.2
Q ss_pred CCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHH
Q 011137 152 GKADRAVKIFLSMHEHG-CRQ--SLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALE 228 (493)
Q Consensus 152 g~~~~a~~~~~~~~~~~-~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 228 (493)
+..+.++.-+.++.... ..| ....|..+...|...|+.++|...|++..+..|.+...|+.+...+...|++++|.+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34455555555555321 111 234466666677777777777777777776666677777777777888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 011137 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308 (493)
Q Consensus 229 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 308 (493)
.|++..+.... +..++..+..++...|++++|.+.++...+.... +. ........+...++.++|.+.|++.....
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 88777765433 4566677777777778888888888777765332 22 11222223344567777777776654332
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 011137 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGK---GYM---PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377 (493)
Q Consensus 309 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 377 (493)
.++...+ .+ .....|+...+ ..+..+.+. ... .....|..+...+.+.|++++|...|++....+
T Consensus 196 ~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2222211 12 22234444333 233333321 100 122456666666677777777777777776654
No 78
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.24 E-value=4e-07 Score=86.94 Aligned_cols=377 Identities=14% Similarity=0.110 Sum_probs=254.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC-RQSLNSFNT 178 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~ 178 (493)
..++..|..+.-++.+.|++..+.+.|++...... -....|..+...|...|.-..|+.+++.-....- +++...+-.
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 45888999999999999999999999999776433 4667889999999999999999999887664321 233444443
Q ss_pred HHHHHH-ccCCHHHHHHHHHHhhc--C---CCCCcchHHHHHHHHHhc-----------CChhHHHHHHHHHHhCCCCCC
Q 011137 179 ILDLLC-KEKKVEKAYNLFKVFRG--K---FKADVISYNVIANGWCLV-----------KRTNKALEVLKEMVDRGLNPN 241 (493)
Q Consensus 179 ll~~~~-~~g~~~~A~~~~~~~~~--~---~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~m~~~g~~p~ 241 (493)
.-..|. +.+.+++++++-.+... + .......|..+.-+|... ....++++.+++..+.+.. |
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-d 477 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-D 477 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-C
Confidence 334443 34667776666555433 1 112333455554444331 2235677778888766543 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCC----------
Q 011137 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG-GVLP---------- 310 (493)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~---------- 310 (493)
......+.--|+..++++.|.....+..+.+..-+...|..|.-.+...+++.+|+.+.+...+. |...
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE 557 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence 33333345556677889999999999988866668889999999999999999999998876543 1100
Q ss_pred --------CHHHHHHHHHHHHh-----------------------cCCHHHHHHHHHHH--------HhCC---------
Q 011137 311 --------SVATYNAMIQVLCK-----------------------KDSVENAILVFEEM--------VGKG--------- 342 (493)
Q Consensus 311 --------~~~~~~~li~~~~~-----------------------~~~~~~a~~~~~~~--------~~~~--------- 342 (493)
-..|...++..+-. .++..+|.+..+.+ ...|
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~ 637 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST 637 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence 01122222222210 00111111111111 0001
Q ss_pred CC--CC------hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 011137 343 YM--PN------STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414 (493)
Q Consensus 343 ~~--~~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 414 (493)
+. |+ ...|......+.+.+..++|...+.+..+.. +.....|......+...|..++|.+.|...... .
T Consensus 638 ~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--d 714 (799)
T KOG4162|consen 638 VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--D 714 (799)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--C
Confidence 01 11 1234455566778888888988888887753 556777888888889999999999999988874 4
Q ss_pred C-CHHHHHHHHHHHhccCCcccHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011137 415 P-NLDTYNILISSMFVRKKSDDLLVAGK--LLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485 (493)
Q Consensus 415 p-~~~~~~~li~~~~~~~~~~~~~~A~~--~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 485 (493)
| ++....++...+.+.|+..- |.+ ++.++.+.+ .-+...|..+...+.+.|+.+.|.+.|....+..
T Consensus 715 P~hv~s~~Ala~~lle~G~~~l---a~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRL---AEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcch---HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 5 46778889999999998877 666 999999875 5569999999999999999999999998766643
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.22 E-value=2.8e-08 Score=81.03 Aligned_cols=197 Identities=12% Similarity=0.028 Sum_probs=108.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc
Q 011137 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV 220 (493)
Q Consensus 141 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 220 (493)
...+.-.|...|+...|.+-+++.++.+ +.+..+|..+...|.+.|+.+.|.+.|++..+..+.+....|.....+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 3344445666666666666666666543 334445555555666666666666666655555555555666666666666
Q ss_pred CChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 011137 221 KRTNKALEVLKEMVDRG-LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299 (493)
Q Consensus 221 ~~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 299 (493)
|++++|...|++....- ..--..+|..+.-+..+.|+.+.|...|++..+.... ...+...+.....+.|++-.|...
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHH
Confidence 66666666666655431 1112345555555556666666666666665555332 333444555555556666666655
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011137 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340 (493)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 340 (493)
++.....+. ++....-..|+.-...|+.+.+-+.=..+.+
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 555555443 4555555555555555555555554444443
No 80
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.21 E-value=8e-07 Score=83.14 Aligned_cols=371 Identities=11% Similarity=0.113 Sum_probs=227.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011137 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSL-SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182 (493)
Q Consensus 104 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 182 (493)
..|-.-+..+..+|+.......|+..... .+......|...+......|-++-++.+|++.++. ++..-+-.|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 35677777778888888888888876543 34445678888888888999999999999999874 33446778888
Q ss_pred HHccCCHHHHHHHHHHhhcC-------CCCCcchHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCC--HHHHHHHHH
Q 011137 183 LCKEKKVEKAYNLFKVFRGK-------FKADVISYNVIANGWCLVKRTN---KALEVLKEMVDRGLNPN--LTTYNIVLK 250 (493)
Q Consensus 183 ~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~---~A~~~~~~m~~~g~~p~--~~~~~~l~~ 250 (493)
+++.+++++|.+.+..+... .+.+...|..+-+...+.-+.- ...++++.+..+ -+| ...|..|..
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 99999999999988876532 4556667877777766654332 233344444432 233 357899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-----------------------------------------
Q 011137 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV----------------------------------------- 289 (493)
Q Consensus 251 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----------------------------------------- 289 (493)
.|.+.|.+++|..+|++....-. +..-++.+.++|..
T Consensus 257 YYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 99999999999999998776521 22222222222211
Q ss_pred -------------------------cCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 290 -------------------------VGEIKRARNVFDGMVNGGVLP------SVATYNAMIQVLCKKDSVENAILVFEEM 338 (493)
Q Consensus 290 -------------------------~g~~~~A~~~~~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~~ 338 (493)
.|+..+-..+|.+..+. +.| -...|..+.+.|-..|+++.|..+|++.
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 11122223333333322 111 1234566777788888899999988888
Q ss_pred HhCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-----------------CCHHHHHHHHHHHHhcCCH
Q 011137 339 VGKGYMPN---STTYNVVIRGLCHTGEMERALEFVGRMKDDECE-----------------PNVQTYNILIRYFCDAGEI 398 (493)
Q Consensus 339 ~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~g~~ 398 (493)
.+...+-- ..+|......=.+..+++.|+++++.....--. -+...|..+++.-...|-+
T Consensus 414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf 493 (835)
T KOG2047|consen 414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF 493 (835)
T ss_pred hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 77644321 234444455555677888888888776532111 1234466666666677888
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHH---cCCHHHH
Q 011137 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR-KFTFNRVLNGLLL---IGNQGLA 474 (493)
Q Consensus 399 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~---~g~~~~a 474 (493)
+....+|+++.+..+. ++.+.......+-.+..+++ +++.+++-+..=-.|+ ...|+..+..+.+ .-+.+.|
T Consensus 494 estk~vYdriidLria-TPqii~NyAmfLEeh~yfee---sFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 494 ESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEE---SFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHH---HHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 8888888888775433 22221112222233344444 6666666554322233 3345555544433 2346677
Q ss_pred HHHHHHHHhcCCCC
Q 011137 475 KEILRLQSRCGRLP 488 (493)
Q Consensus 475 ~~~~~~~~~~g~~~ 488 (493)
+.+|+...+ |..|
T Consensus 570 RdLFEqaL~-~Cpp 582 (835)
T KOG2047|consen 570 RDLFEQALD-GCPP 582 (835)
T ss_pred HHHHHHHHh-cCCH
Confidence 777776666 4444
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.21 E-value=2.4e-08 Score=81.48 Aligned_cols=196 Identities=13% Similarity=0.008 Sum_probs=115.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011137 177 NTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256 (493)
Q Consensus 177 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 256 (493)
.-|.-.|...|+...|..-+++..+..|.+..+|..+...|.+.|+.+.|.+.|++....... +....|.....+|..|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg 117 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCC
Confidence 344455666666666666666666655556666666666666666666666666666655433 4455666666666666
Q ss_pred CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011137 257 QIEEAWRFFLEMKKRK-CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335 (493)
Q Consensus 257 ~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 335 (493)
++++|...|++....- ...-..+|..+.-+..+.|+.+.|...|++.++.... ...+...+.....+.|++-.|...+
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHH
Confidence 6666666666665542 1223445556666666666666666666666654222 2334455555566666666666666
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 011137 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375 (493)
Q Consensus 336 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 375 (493)
+.....+. ++.......|+.--..|+.+.+-++=..+..
T Consensus 197 ~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 197 ERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 66655544 5555555555555556666555555444444
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.18 E-value=2e-07 Score=87.44 Aligned_cols=269 Identities=11% Similarity=0.059 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 011137 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGC-RQSL-NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIAN 215 (493)
Q Consensus 138 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 215 (493)
...+..+...+...|+.+.+.+.+....+... ..+. .........+...|++++|.+.+++.....|.+...+.. ..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hH
Confidence 34555666666667777776666666553221 1121 222223345566788888888888877666666655553 22
Q ss_pred HHHh----cCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 011137 216 GWCL----VKRTNKALEVLKEMVDRGLNPN-LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290 (493)
Q Consensus 216 ~~~~----~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 290 (493)
.+.. .+..+.+.+.+.. .....|+ ......+...+...|++++|.+.+++..+.... +...+..+...+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHc
Confidence 2222 3444445544443 1122233 334445666777888888888888888877433 566777788888888
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChhhH-H--HHHHHHHhcCCH
Q 011137 291 GEIKRARNVFDGMVNGGVL-PSV--ATYNAMIQVLCKKDSVENAILVFEEMVGKGY-MPNSTTY-N--VVIRGLCHTGEM 363 (493)
Q Consensus 291 g~~~~A~~~~~~~~~~~~~-~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~~~~ 363 (493)
|++++|+..+++....... ++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 8888888888887764321 222 2345677778888888888888888754322 1111111 1 222223333433
Q ss_pred HHHHHH--HHHhhhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 364 ERALEF--VGRMKDDEC--EPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 364 ~~a~~~--~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
..+.++ +........ ............++...|+.++|..+++.+..
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 222222 111111100 11112222455566677777777777776654
No 83
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=1.3e-07 Score=79.96 Aligned_cols=406 Identities=11% Similarity=0.085 Sum_probs=242.3
Q ss_pred HHHHHHHHHHHhh--ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH-HH
Q 011137 69 PQLVDQIIKRLWN--HALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAI-IA 145 (493)
Q Consensus 69 ~~~~~~~l~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~ 145 (493)
...+..++.++-+ +...|++....-.+.. +.+....+.+...|....++..|-..|+++-..- |...-|.. -.
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~A 85 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQA 85 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHH
Confidence 3334555555443 3456777776655543 3477788888888899999999999999987754 44444433 35
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCh
Q 011137 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD--LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRT 223 (493)
Q Consensus 146 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 223 (493)
..+.+.+.+..|+.+...|.+. +....-..-+. .....+++..+..++++.... .+..+.+...-...+.|++
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--n~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--NEADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC--CccchhccchheeeccccH
Confidence 5677788999999998877653 22221111122 234567888888888877642 2555666666677789999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------------CCH--------HHHHH
Q 011137 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE-------------IDV--------VTYTT 282 (493)
Q Consensus 224 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------------~~~--------~~~~~ 282 (493)
++|.+-|+...+-+---....|+..+ ++.+.|+++.|++...++.++|+. +|+ ..-+.
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 99999999987654333556777555 455778999999999999999854 111 11222
Q ss_pred HH-------HHHhccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 011137 283 IV-------HGFGVVGEIKRARNVFDGMVNG-GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354 (493)
Q Consensus 283 li-------~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 354 (493)
++ ..+.+.|+++.|.+.+-.|... ....|..|...+.-.- -.+++.+..+-+.-+.+.+. -...||..++
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlL 317 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLL 317 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHH
Confidence 33 3356778888888888777432 1233555555443221 23445555555555555544 3456888888
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCC-CCHHHHHHHHHHHH-hcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCC
Q 011137 355 RGLCHTGEMERALEFVGRMKDDECE-PNVQTYNILIRYFC-DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432 (493)
Q Consensus 355 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 432 (493)
-.||+..-++.|-+++.+-.....+ .+...|+. ++++. ..-..++|.+-++.+... +.-.......-+.--...++
T Consensus 318 llyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La~~-l~~kLRklAi~vQe~r~~~d 395 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLAGM-LTEKLRKLAIQVQEARHNRD 395 (459)
T ss_pred HHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccc
Confidence 8899988888888887664433211 23334443 33333 345667776666555432 00001111111111111222
Q ss_pred cccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcccc
Q 011137 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQFK 492 (493)
Q Consensus 433 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~ 492 (493)
-.....|++-+++.++. --.+..+-.+.+++..|+..+.++|+.-.+.....+.|+
T Consensus 396 d~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd~Wk 451 (459)
T KOG4340|consen 396 DEAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHDVWK 451 (459)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHhhhcccceee
Confidence 22222344444444432 122333444567889999999999998877766666554
No 84
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=1.1e-06 Score=81.49 Aligned_cols=391 Identities=13% Similarity=0.093 Sum_probs=198.6
Q ss_pred HHHHHHHHHHHh-hChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 011137 69 PQLVDQIIKRLW-NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147 (493)
Q Consensus 69 ~~~~~~~l~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 147 (493)
+.++..+-.... ....+|......+.... +.+...+..-+-++.+.+.|++|+.+.+.-... ..+...+-.-..+
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc 88 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYC 88 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHH
Confidence 444445444333 23567777777776542 567777888788888888888888655442211 1111111222344
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCC---------------------
Q 011137 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKAD--------------------- 206 (493)
Q Consensus 148 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--------------------- 206 (493)
..+.++.++|+..++-.. +.+..+...-.+.+.+.|++++|.++|+.+.+...++
T Consensus 89 ~Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~ 164 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLL 164 (652)
T ss_pred HHHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHH
Confidence 556788888888877222 1233455555677888889999999988875431111
Q ss_pred -------cchHHH---HHHHHHhcCChhHHHHHHHHHHhCC-------CCCCH-------HHHHHHHHHHHhcCCHHHHH
Q 011137 207 -------VISYNV---IANGWCLVKRTNKALEVLKEMVDRG-------LNPNL-------TTYNIVLKGYFRAGQIEEAW 262 (493)
Q Consensus 207 -------~~~~~~---l~~~~~~~~~~~~A~~~~~~m~~~g-------~~p~~-------~~~~~l~~~~~~~g~~~~a~ 262 (493)
..+|.. ..-.+...|++.+|+++++...+.+ -.-+. ..-..+..++...|+.++|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 112222 2233445677777777776663221 11001 11123344455667777777
Q ss_pred HHHHHHHHCCCCCCHHH----HHHHHHHHhccCCH-H-HHHHHHHH------------HH--------------------
Q 011137 263 RFFLEMKKRKCEIDVVT----YTTIVHGFGVVGEI-K-RARNVFDG------------MV-------------------- 304 (493)
Q Consensus 263 ~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~~-~-~A~~~~~~------------~~-------------------- 304 (493)
+++...++.... |... -|.|+.. ....++ + .++..++. +.
T Consensus 245 ~iy~~~i~~~~~-D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk 322 (652)
T KOG2376|consen 245 SIYVDIIKRNPA-DEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNK 322 (652)
T ss_pred HHHHHHHHhcCC-CchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 777766666432 3211 1222211 110000 0 00000000 00
Q ss_pred ---------HC-CCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH-
Q 011137 305 ---------NG-GVLPSVATYNAMIQVLC--KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG- 371 (493)
Q Consensus 305 ---------~~-~~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~- 371 (493)
.. +..| ...+..++..+. +...+.++.+++...-+....-.....-..+......|+++.|.+++.
T Consensus 323 ~~q~r~~~a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~ 401 (652)
T KOG2376|consen 323 MDQVRELSASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSL 401 (652)
T ss_pred HHHHHHHHHhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 00 0011 112222222221 112345555555555544222223344455566667788888888877
Q ss_pred -------HhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC--CCCCC----HHHHHHHHHHHhccCCcccHHH
Q 011137 372 -------RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG--VCLPN----LDTYNILISSMFVRKKSDDLLV 438 (493)
Q Consensus 372 -------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~~~~~~~~~ 438 (493)
.+.+.+.. +.+...+...+.+.++.+.|..++.+.... .-.+. ..++..++..-.+.|+.++
T Consensus 402 ~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e--- 476 (652)
T KOG2376|consen 402 FLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE--- 476 (652)
T ss_pred HhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH---
Confidence 44433333 345556666677766655555555554331 00111 1223333333345577777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011137 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477 (493)
Q Consensus 439 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 477 (493)
|..+++++.+.. .+|..+...++.+|+.. +.+.|..+
T Consensus 477 a~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l 513 (652)
T KOG2376|consen 477 ASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESL 513 (652)
T ss_pred HHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHH
Confidence 888888888753 56677777777777664 45555443
No 85
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=6.4e-08 Score=81.86 Aligned_cols=329 Identities=11% Similarity=0.077 Sum_probs=220.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHH
Q 011137 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT-ILDL 182 (493)
Q Consensus 104 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-ll~~ 182 (493)
..+.+++.-+.+..++..|++++.....+.. .+......+..+|....++..|-..++++-.. .|...-|.. -.+.
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS 87 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence 3477788888889999999999988777653 36778888999999999999999999998764 354444432 3456
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCcc--hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011137 183 LCKEKKVEKAYNLFKVFRGKFKADVI--SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260 (493)
Q Consensus 183 ~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 260 (493)
+.+.+.+.+|+++...|... ++.. ....-.......+++..+..++++....| +..+.+.......+.|++++
T Consensus 88 LY~A~i~ADALrV~~~~~D~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 77889999999998888753 1221 12222223345788888888888776433 45566666666778999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-------------CHH--------------
Q 011137 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP-------------SVA-------------- 313 (493)
Q Consensus 261 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~~-------------- 313 (493)
|.+-|+...+-+--.....|+.-+ +..+.|+++.|++...++++.|++. |..
T Consensus 163 AvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 999999988764433556676544 5557789999999999999988742 111
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 011137 314 -TYNAMIQVLCKKDSVENAILVFEEMVGK-GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391 (493)
Q Consensus 314 -~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 391 (493)
.+|.-...+.+.|+++.|.+.+.+|.-+ ....|++|...+.-.= ..+++.+..+-+.-+.+.+ +-..+|+..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 1222233446788888888888888643 2345667766544221 2455666666666666664 3457789999999
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHhc-cCCcccHHHHHHHHHHHH
Q 011137 392 FCDAGEIERGLELFEKMGSGVCL-PNLDTYNILISSMFV-RKKSDDLLVAGKLLIEMV 447 (493)
Q Consensus 392 ~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~-~~~~~~~~~A~~~~~~m~ 447 (493)
||+..-++-|-+++.+-...-.. .+...|+.+ .++.. .-..++ |++-++.+.
T Consensus 320 yCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LL-daLIt~qT~pEe---a~KKL~~La 373 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAENAHLTYKFLTPYLYDLL-DALITCQTAPEE---AFKKLDGLA 373 (459)
T ss_pred HhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHH-HHHHhCCCCHHH---HHHHHHHHH
Confidence 99998899888887654432111 234444433 33332 233444 666555544
No 86
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.12 E-value=7.2e-07 Score=94.63 Aligned_cols=335 Identities=9% Similarity=0.035 Sum_probs=210.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCC-------C--cchHHHHHHHH
Q 011137 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-------D--VISYNVIANGW 217 (493)
Q Consensus 147 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-------~--~~~~~~l~~~~ 217 (493)
.....|+++.+..+++.+.......+..........+...|+++++..++......... . ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 45556777777777665532111112222334445566789999999888776432211 1 11223344556
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHh
Q 011137 218 CLVKRTNKALEVLKEMVDRGLNPNL----TTYNIVLKGYFRAGQIEEAWRFFLEMKKR----KC-EIDVVTYTTIVHGFG 288 (493)
Q Consensus 218 ~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~ 288 (493)
...|++++|...+++..+.-...+. ...+.+...+...|++++|...+.+.... |. .....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6799999999999988763212121 34456667788899999999999887653 11 111234556677788
Q ss_pred ccCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC--ChhhHHHHHHHH
Q 011137 289 VVGEIKRARNVFDGMVNG----GVL--P-SVATYNAMIQVLCKKDSVENAILVFEEMVGK--GYMP--NSTTYNVVIRGL 357 (493)
Q Consensus 289 ~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~~li~~~ 357 (493)
..|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 999999999998886542 211 1 2233455566777889999999999877553 1112 233444556677
Q ss_pred HhcCCHHHHHHHHHHhhhC--CCCCCHH--H--HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHh
Q 011137 358 CHTGEMERALEFVGRMKDD--ECEPNVQ--T--YNILIRYFCDAGEIERGLELFEKMGSGVCLPN---LDTYNILISSMF 428 (493)
Q Consensus 358 ~~~~~~~~a~~~~~~~~~~--~~~~~~~--~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~li~~~~ 428 (493)
...|+.++|.+.+...... ....... . ....+..+...|+.+.|...+........... ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 8899999999998887543 1111111 1 01122444568999999999877655321111 111345666778
Q ss_pred ccCCcccHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011137 429 VRKKSDDLLVAGKLLIEMVDR----GFMPR-KFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484 (493)
Q Consensus 429 ~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 484 (493)
..|+.++ |...+++.... |...+ ..+...+..++...|+.++|.+.+....+.
T Consensus 703 ~~g~~~~---A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 703 LLGQFDE---AEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHH---HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8898888 88888887643 33332 235556666889999999999998876654
No 87
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.11 E-value=7.1e-09 Score=92.10 Aligned_cols=148 Identities=16% Similarity=0.164 Sum_probs=59.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC
Q 011137 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK----KD 326 (493)
Q Consensus 251 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~ 326 (493)
.+...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+.+ +..+...+..++.. .+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCch
Confidence 333445555555544321 133344444444555555555555555544421 11222222222221 22
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Q 011137 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI-ERGLELF 405 (493)
Q Consensus 327 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~ 405 (493)
.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+....+ +-+..+...++.+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 344555555554333 23344444444444444555555555544444332 22333444444444444443 3344444
Q ss_pred HHHh
Q 011137 406 EKMG 409 (493)
Q Consensus 406 ~~~~ 409 (493)
.++.
T Consensus 260 ~qL~ 263 (290)
T PF04733_consen 260 SQLK 263 (290)
T ss_dssp HHCH
T ss_pred HHHH
Confidence 4443
No 88
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.01 E-value=1.7e-05 Score=73.09 Aligned_cols=150 Identities=11% Similarity=0.140 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011137 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP-NVQTYNILIRYFCDAGEIERGLELFE 406 (493)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 406 (493)
.+....+++++...-..--..+|...++...+..-+..|..+|.++.+.+..+ ++.++++++..||. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 45556666666554322234578888888888888999999999999886655 77888889888874 78889999998
Q ss_pred HHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011137 407 KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR--KFTFNRVLNGLLLIGNQGLAKEILRLQS 482 (493)
Q Consensus 407 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 482 (493)
--.+. ..-++.--...++-+...++-.. +..+|++.+..++.|+ ...|..++.--..-|+.+.+.++-+.+.
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N---~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNN---ARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchh---HHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 66554 22334444566677777788777 8899999998877766 5789999998888999998888776443
No 89
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.98 E-value=1.2e-05 Score=77.21 Aligned_cols=352 Identities=11% Similarity=0.070 Sum_probs=235.2
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCC--CC
Q 011137 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF--KA 205 (493)
Q Consensus 128 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~ 205 (493)
++....+.-+...|..+.-+....|++..+.+.|++....- -.....|+.+...|...|.-..|..+++.-.... ++
T Consensus 313 k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps 391 (799)
T KOG4162|consen 313 KLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPS 391 (799)
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCC
Confidence 33334455688899999999999999999999999987643 3456789999999999999999999987655433 44
Q ss_pred CcchHHHHHHHHHh-cCChhHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHH
Q 011137 206 DVISYNVIANGWCL-VKRTNKALEVLKEMVDR--GL--NPNLTTYNIVLKGYFRAG-----------QIEEAWRFFLEMK 269 (493)
Q Consensus 206 ~~~~~~~l~~~~~~-~~~~~~A~~~~~~m~~~--g~--~p~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~ 269 (493)
|...+-.....|.+ .+..++++.+-.+..+. +. ......|..+.-+|...- ...++.+.+++..
T Consensus 392 ~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av 471 (799)
T KOG4162|consen 392 DISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAV 471 (799)
T ss_pred cchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHH
Confidence 55555555555544 57778888887777652 11 113344555555544321 2456778888887
Q ss_pred HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC---
Q 011137 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK-GYMP--- 345 (493)
Q Consensus 270 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~--- 345 (493)
+.+.. |+.+...+.--|+..++++.|.+..++..+.+..-+...|..+.-.+.-.+++.+|+.+.+...+. |...
T Consensus 472 ~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~ 550 (799)
T KOG4162|consen 472 QFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLM 550 (799)
T ss_pred hcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhc
Confidence 76543 333333455567788999999999999998866678899999999999999999999999877654 2100
Q ss_pred ---------------ChhhHHHHHHHHHh---------c--------------CCHHHHHHHHHHhh--------hCC--
Q 011137 346 ---------------NSTTYNVVIRGLCH---------T--------------GEMERALEFVGRMK--------DDE-- 377 (493)
Q Consensus 346 ---------------~~~~~~~li~~~~~---------~--------------~~~~~a~~~~~~~~--------~~~-- 377 (493)
...|...++..+-. . ++..+|.+....+. ..+
T Consensus 551 ~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se 630 (799)
T KOG4162|consen 551 DGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSE 630 (799)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccc
Confidence 01111122211110 0 01111111111110 001
Q ss_pred -------C--CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHH
Q 011137 378 -------C--EPN------VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442 (493)
Q Consensus 378 -------~--~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~ 442 (493)
+ .|+ ...|......+.+.++.++|...+.+.... .+-....|......+...|+.++ |.+.
T Consensus 631 ~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~E---A~~a 706 (799)
T KOG4162|consen 631 LKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEE---AKEA 706 (799)
T ss_pred cccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHH---HHHH
Confidence 0 111 123556677788889999999888888764 33456677777778888899998 9999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHHhcCCC
Q 011137 443 LIEMVDRGFMPR-KFTFNRVLNGLLLIGNQGLAKE--ILRLQSRCGRL 487 (493)
Q Consensus 443 ~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~g~~ 487 (493)
|..... +.|+ .....++...+.+.|+...|.. ++..+.+.+-.
T Consensus 707 f~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~ 752 (799)
T KOG4162|consen 707 FLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL 752 (799)
T ss_pred HHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC
Confidence 988886 4677 5677788889999998877777 88888877644
No 90
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.97 E-value=7.3e-08 Score=85.69 Aligned_cols=250 Identities=15% Similarity=0.140 Sum_probs=162.5
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 011137 111 DLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190 (493)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 190 (493)
+-+.-.|++..++.-.+ ........+......+.+++...|+++.++ .++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 33445688888876555 333332234556677888899999877554 4444333 566666655554444334555
Q ss_pred HHHHHHHHhhcC-CC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 191 KAYNLFKVFRGK-FK-ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268 (493)
Q Consensus 191 ~A~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 268 (493)
.+..-++..... .. .+..........+...|++++|+++++.- -+.......+.+|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555443322 22 22333334445667789999998888653 25667777889999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHh----ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011137 269 KKRKCEIDVVTYTTIVHGFG----VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344 (493)
Q Consensus 269 ~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 344 (493)
.+.+ .| .+...+..++. ..+.+.+|..+|+++.+. ..++..+.+.+..+....|++++|.+++.+..+.+..
T Consensus 158 ~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred HhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 8763 23 33444555443 334689999999998765 5578888899999999999999999999998876543
Q ss_pred CChhhHHHHHHHHHhcCCH-HHHHHHHHHhhhC
Q 011137 345 PNSTTYNVVIRGLCHTGEM-ERALEFVGRMKDD 376 (493)
Q Consensus 345 ~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~ 376 (493)
+..+...++.+....|+. +.+.+++.++...
T Consensus 234 -~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 234 -DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp -HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred -CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 566777778777788887 6777888888765
No 91
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=3.3e-06 Score=77.67 Aligned_cols=370 Identities=14% Similarity=0.106 Sum_probs=227.4
Q ss_pred hhChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 011137 80 WNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPT-QKTFAIIAERYVSAGKADRAV 158 (493)
Q Consensus 80 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~ 158 (493)
..+.+.|+..|....... |++...|+.-..+++..|++++|++=-.+-++.. |+ ...|.....++.-.|++++|+
T Consensus 15 ~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred cccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhcccHHHHH
Confidence 356788999887765543 4588899999999999999999988666655543 45 468888888899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHH------HHhhcC----CCCCcchHHHHHHHHHhc--------
Q 011137 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF------KVFRGK----FKADVISYNVIANGWCLV-------- 220 (493)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~------~~~~~~----~~~~~~~~~~l~~~~~~~-------- 220 (493)
..|.+-++.. +.+...++-+.+++... .. +.+.| ..+... .......|..++..+-+.
T Consensus 91 ~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~~-~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 91 LAYSEGLEKD-PSNKQLKTGLAQAYLED--YA-ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHhhcC-CchHHHHHhHHHhhhHH--HH-hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 9999988864 45566777777776211 00 01111 111000 000112233333322211
Q ss_pred --CChhHHHHHHHH-----HHhCC-------CCC------------C----------HHHHHHHHHHHHhcCCHHHHHHH
Q 011137 221 --KRTNKALEVLKE-----MVDRG-------LNP------------N----------LTTYNIVLKGYFRAGQIEEAWRF 264 (493)
Q Consensus 221 --~~~~~A~~~~~~-----m~~~g-------~~p------------~----------~~~~~~l~~~~~~~g~~~~a~~~ 264 (493)
.++..+.-.+.. +...| ..| | ..-...+.++..+..+++.+++-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 111111111100 00011 111 0 12245677777888888889888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHhcCCHHHHHHHHHH
Q 011137 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA-------MIQVLCKKDSVENAILVFEE 337 (493)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------li~~~~~~~~~~~a~~~~~~ 337 (493)
+....... -+..-++....+|...|.+..+...-+...+.|-. ...-|+. +..+|.+.++++.|...|.+
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 88888775 46666777778888888888777776666555432 2222333 33355667788888888877
Q ss_pred HHhCCCCCChhhH-------------------------HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 011137 338 MVGKGYMPNSTTY-------------------------NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392 (493)
Q Consensus 338 ~~~~~~~~~~~~~-------------------------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 392 (493)
.......|+...- ..-...+.+.|++..|+..|.+++... +-|...|....-+|
T Consensus 324 aLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 324 ALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACY 402 (539)
T ss_pred HhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHH
Confidence 6654333322111 111334567788888888888888775 55777888888888
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011137 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467 (493)
Q Consensus 393 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 467 (493)
.+.|++..|+.-.+...+.. ++....|..-..++....+++. |.+.|.+.++. .|+..-+..-+.-|..
T Consensus 403 ~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydk---Aleay~eale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDK---ALEAYQEALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhc--CchhHHHHHHHHHHHH
Confidence 88888888888777777751 2234455555555556667777 78888887775 4665555544444444
No 92
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=1.7e-07 Score=86.64 Aligned_cols=254 Identities=10% Similarity=0.037 Sum_probs=191.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 011137 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293 (493)
Q Consensus 214 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 293 (493)
..-+.+.|++.+|.-.|+..++..+. +...|..|.......++-..|+..+.+..+.... +......|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhH
Confidence 34456789999999999999988665 7789999999999999999999999999988554 788888899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHH---------HHHHhcCCHHHHHHHHHHHH-hCCCCCChhhHHHHHHHHHhcCCH
Q 011137 294 KRARNVFDGMVNGGVLPSVATYNAMI---------QVLCKKDSVENAILVFEEMV-GKGYMPNSTTYNVVIRGLCHTGEM 363 (493)
Q Consensus 294 ~~A~~~~~~~~~~~~~~~~~~~~~li---------~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~ 363 (493)
..|.+.++..+....+- .|.... ..+..........++|-++. ..+..+|+..+..|.-.|--.|++
T Consensus 370 ~~Al~~L~~Wi~~~p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHHHhCccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 99999999987643210 000000 11112223344555554444 445457888888888888889999
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHhccCCcccHHHHHHH
Q 011137 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN-LDTYNILISSMFVRKKSDDLLVAGKL 442 (493)
Q Consensus 364 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~A~~~ 442 (493)
++|.+.|+.++... +-|..+||.|...+....+.++|+..|++..+ +.|+ +.+...|.-+|...|.+++ |.+.
T Consensus 447 draiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykE---A~~h 520 (579)
T KOG1125|consen 447 DRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKE---AVKH 520 (579)
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHH---HHHH
Confidence 99999999999874 55778999999999999999999999999998 4565 4566667778999999999 8888
Q ss_pred HHHHHH---CC------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 011137 443 LIEMVD---RG------FMPRKFTFNRVLNGLLLIGNQGLAKEIL 478 (493)
Q Consensus 443 ~~~m~~---~g------~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 478 (493)
|-+.+. ++ -.++...|..|-.++...++.|.+.++.
T Consensus 521 lL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 521 LLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 776553 31 1223457888877888888887655443
No 93
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.95 E-value=4.4e-06 Score=88.74 Aligned_cols=335 Identities=10% Similarity=0.050 Sum_probs=210.9
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC------CCC--HHHHHHHHHHHH
Q 011137 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC------RQS--LNSFNTILDLLC 184 (493)
Q Consensus 113 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~--~~~~~~ll~~~~ 184 (493)
+...|++..+...++.+.......+..........+...|+++++...+......-- .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 334466666555555542211111222333445556678999999999987754210 111 112223334566
Q ss_pred ccCCHHHHHHHHHHhhcCCCCCc-----chHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHh
Q 011137 185 KEKKVEKAYNLFKVFRGKFKADV-----ISYNVIANGWCLVKRTNKALEVLKEMVDR----GL-NPNLTTYNIVLKGYFR 254 (493)
Q Consensus 185 ~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~-~p~~~~~~~l~~~~~~ 254 (493)
..|++++|...++......+... ...+.+...+...|++++|...+++.... |. .....++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 78999999999987654322211 24566677788899999999999888642 11 1112355667778889
Q ss_pred cCCHHHHHHHHHHHHHC----CCC---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC--CCCC--CHHHHHHHHHHHH
Q 011137 255 AGQIEEAWRFFLEMKKR----KCE---IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG--GVLP--SVATYNAMIQVLC 323 (493)
Q Consensus 255 ~g~~~~a~~~~~~~~~~----~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~--~~~~~~~li~~~~ 323 (493)
.|++++|...+++.... +.. .....+..+...+...|++++|...+.+.... ...+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999998876553 211 12334455666778889999999999887553 1112 2334455666788
Q ss_pred hcCCHHHHHHHHHHHHhCCCC-CChhhH-----HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---HHHHHHHHHHHHh
Q 011137 324 KKDSVENAILVFEEMVGKGYM-PNSTTY-----NVVIRGLCHTGEMERALEFVGRMKDDECEPN---VQTYNILIRYFCD 394 (493)
Q Consensus 324 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~-----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 394 (493)
..|+.++|...++........ .....+ ...+..+...|+.+.|.+++........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 899999999999887542110 011111 1122444568999999999877654321111 1124567778889
Q ss_pred cCCHHHHHHHHHHHhcC----CCCCC-HHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCC
Q 011137 395 AGEIERGLELFEKMGSG----VCLPN-LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450 (493)
Q Consensus 395 ~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g 450 (493)
.|+.++|...+++.... |...+ ..+...+..++...|+.++ |...+.+..+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~---A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSE---AQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHh
Confidence 99999999999887653 22222 3456666778889999988 999999988753
No 94
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=2e-05 Score=73.45 Aligned_cols=364 Identities=12% Similarity=0.143 Sum_probs=215.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 011137 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187 (493)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 187 (493)
+=++.+...|++++|.+...++...+ +.+...+..-+-++++.+++++|+.+.+.-... ..+...+-.-..+..+.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcc
Confidence 34566778899999999999999876 567788888899999999999999665443211 111111112234455789
Q ss_pred CHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-C-------------------------
Q 011137 188 KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP-N------------------------- 241 (493)
Q Consensus 188 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~------------------------- 241 (493)
..++|+..++-.. +.+..+...-...+.+.|++++|+++|+.+.+.+..- +
T Consensus 94 k~Dealk~~~~~~---~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v 170 (652)
T KOG2376|consen 94 KLDEALKTLKGLD---RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEV 170 (652)
T ss_pred cHHHHHHHHhccc---ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCC
Confidence 9999998887322 2344577777888999999999999999998765321 0
Q ss_pred -HHHHHHH---HHHHHhcCCHHHHHHHHHHHHHCC-------CCCCH-------HHHHHHHHHHhccCCHHHHHHHHHHH
Q 011137 242 -LTTYNIV---LKGYFRAGQIEEAWRFFLEMKKRK-------CEIDV-------VTYTTIVHGFGVVGEIKRARNVFDGM 303 (493)
Q Consensus 242 -~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~ 303 (493)
..+|..+ ...+...|++.+|+++++...+.+ -.-+. ..-..|...+-..|+.++|..+|...
T Consensus 171 ~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 171 PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 1122222 233556788888888888773321 11111 11223445567788888888888888
Q ss_pred HHCCCCCCHHH----HHHHHHHHHhcCCH----------------HHHHHHH-------------------------HHH
Q 011137 304 VNGGVLPSVAT----YNAMIQVLCKKDSV----------------ENAILVF-------------------------EEM 338 (493)
Q Consensus 304 ~~~~~~~~~~~----~~~li~~~~~~~~~----------------~~a~~~~-------------------------~~~ 338 (493)
++.... |... -|.++..-....-+ +.+..-+ ++.
T Consensus 251 i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~ 329 (652)
T KOG2376|consen 251 IKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVREL 329 (652)
T ss_pred HHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 876442 3311 11121110000000 0000000 000
Q ss_pred HhC--CCCCChhhHHHHHHHHHh--cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------
Q 011137 339 VGK--GYMPNSTTYNVVIRGLCH--TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE-------- 406 (493)
Q Consensus 339 ~~~--~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-------- 406 (493)
... +..|. ..+..++..+.+ ......+..++...-+....-...+.-.+++.....|+++.|.+++.
T Consensus 330 ~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~s 408 (652)
T KOG2376|consen 330 SASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKS 408 (652)
T ss_pred HHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Confidence 000 11122 233344433322 22456666666666554322234556667778889999999999999
Q ss_pred HHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHC--CCCCCHHHHHHHHH----HHHHcCCHHHHHHHHHH
Q 011137 407 KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR--GFMPRKFTFNRVLN----GLLLIGNQGLAKEILRL 480 (493)
Q Consensus 407 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~----~~~~~g~~~~a~~~~~~ 480 (493)
.+.+.+. .+.+...++..+.+.++.+. |..++.+.+.. .-.+.......++. --.+.|+.++|..+++.
T Consensus 409 s~~~~~~--~P~~V~aiv~l~~~~~~~~~---a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~lee 483 (652)
T KOG2376|consen 409 SILEAKH--LPGTVGAIVALYYKIKDNDS---ASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEE 483 (652)
T ss_pred hhhhhcc--ChhHHHHHHHHHHhccCCcc---HHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHH
Confidence 5544333 34455566667777777777 66777766532 11222233333333 34567999999999999
Q ss_pred HHhc
Q 011137 481 QSRC 484 (493)
Q Consensus 481 ~~~~ 484 (493)
+.+.
T Consensus 484 l~k~ 487 (652)
T KOG2376|consen 484 LVKF 487 (652)
T ss_pred HHHh
Confidence 8884
No 95
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=8.5e-06 Score=71.02 Aligned_cols=201 Identities=11% Similarity=0.071 Sum_probs=114.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCH-HHHH
Q 011137 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG-------QIEEAWRFFLEMKKRKCEIDV-VTYT 281 (493)
Q Consensus 210 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~-~~~~ 281 (493)
-..|+-.|.+.+++.+|..+.+++.- . ++.-|-.-.-.++..| ...-|.+.|+..-..+..-|. .--.
T Consensus 288 RlNL~iYyL~q~dVqeA~~L~Kdl~P--t--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQ 363 (557)
T KOG3785|consen 288 RLNLIIYYLNQNDVQEAISLCKDLDP--T--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQ 363 (557)
T ss_pred hhhheeeecccccHHHHHHHHhhcCC--C--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchH
Confidence 34455567777888888777666531 1 2222221111222222 244566666655554433232 2234
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH-HHHHHHHhc
Q 011137 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN-VVIRGLCHT 360 (493)
Q Consensus 282 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~ 360 (493)
.+..++.-..++++++-.++.+..--.. |...--.+.++++..|.+.+|+++|-.+....++ |..+|. .+.++|.+.
T Consensus 364 smAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~n 441 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRN 441 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhc
Confidence 4555566666777777777766654222 3333334677888888888888888766655444 444544 455677788
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHH
Q 011137 361 GEMERALEFVGRMKDDECEPNVQT-YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421 (493)
Q Consensus 361 ~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 421 (493)
+.++.|++++-.+... .+..+ ...+..-|.+++++--|-+.|+.+... .|++..|.
T Consensus 442 kkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe 498 (557)
T KOG3785|consen 442 KKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE 498 (557)
T ss_pred CCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC
Confidence 8888887776555432 22222 334456667777777777777777663 46666554
No 96
>PLN02789 farnesyltranstransferase
Probab=98.95 E-value=1.4e-06 Score=78.70 Aligned_cols=213 Identities=9% Similarity=0.035 Sum_probs=144.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 011137 107 DHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAG-KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185 (493)
Q Consensus 107 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 185 (493)
..+-.++...+..++|+.+.+++....+ -+..+|......+...| ++++++..++++.+.. +.+..+|+....++.+
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~ 118 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHH
Confidence 3333445556778888888888887653 34556666666666666 5788898888888764 4556677766656666
Q ss_pred cCCH--HHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCH--
Q 011137 186 EKKV--EKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA---GQI-- 258 (493)
Q Consensus 186 ~g~~--~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~---g~~-- 258 (493)
.|+. +++..+++.+.+..+.|..+|+....++...|+++++++.++++++.++. |..+|+....++.+. |..
T Consensus 119 l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred cCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccc
Confidence 6653 66777787777777778888888888888888899999999999887766 666777666665554 222
Q ss_pred --HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 011137 259 --EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV----GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324 (493)
Q Consensus 259 --~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 324 (493)
++......+++...+. |...|+.+...+... +...+|.+.+.+..+.++ .+......|+..|+.
T Consensus 198 ~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 198 MRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred cHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 4566666666665433 677777777777662 334557777777665432 355666667777764
No 97
>PLN02789 farnesyltranstransferase
Probab=98.93 E-value=2.8e-06 Score=76.67 Aligned_cols=206 Identities=9% Similarity=0.030 Sum_probs=146.7
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCh--hH
Q 011137 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK-KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRT--NK 225 (493)
Q Consensus 149 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~ 225 (493)
...++.++|+.+++++++.. +.+..+|+....++...| ++++++..++++....+.+..+|+.....+.+.|+. ++
T Consensus 48 ~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 34567889999999988754 345567777777777777 578999999988887777888888777777677763 67
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---CC----HHHHHH
Q 011137 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV---GE----IKRARN 298 (493)
Q Consensus 226 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~----~~~A~~ 298 (493)
++.+++++.+...+ +..+|+...-++.+.|+++++++.++++++.++. +..+|+.....+.+. |. .+.+++
T Consensus 127 el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 127 ELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHH
Confidence 88888888877665 7788888888888889999999999999888665 667777766665544 22 245666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011137 299 VFDGMVNGGVLPSVATYNAMIQVLCKK----DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359 (493)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 359 (493)
...+++.... -|...|+.+...+... +...+|...+.+....++ .+...+..|+..|+.
T Consensus 205 y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 205 YTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 6666666533 3667777777777662 334556666666655432 255566666666664
No 98
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.90 E-value=1.6e-06 Score=88.05 Aligned_cols=221 Identities=14% Similarity=0.136 Sum_probs=101.1
Q ss_pred hHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCC---HHHHHHHHHHHHHcCCHHHHH
Q 011137 83 ALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSL-SLGPT---QKTFAIIAERYVSAGKADRAV 158 (493)
Q Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~a~ 158 (493)
+..|-+|-+.++..|+ +...|-.-|......++.+.|.++.++.... ++.-. ...|.++++.-..-|.-+...
T Consensus 1441 pesaeDferlvrssPN---SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~ 1517 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPN---SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLK 1517 (1710)
T ss_pred CcCHHHHHHHHhcCCC---cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHH
Confidence 3344444444444432 4445555555555555555555555554432 11111 123444444444444445555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 011137 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238 (493)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 238 (493)
++|+++.+.. ..-.+|..|...|.+.+.+++|.++|+.|.+++.-....|...+..+.+..+-+.|..++.+..+.=.
T Consensus 1518 kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1518 KVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP 1595 (1710)
T ss_pred HHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc
Confidence 5555555431 22234445555555555555555555555544444444555555555555555555555555443211
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 011137 239 NP-NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309 (493)
Q Consensus 239 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 309 (493)
+- ........+..-.+.|+.+.+..+|+...... +--...|+..++.-.+.|+.+.++.+|+++...+..
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 10 01112222233334455555555555544442 223444555555555555555555555555544443
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.88 E-value=3.8e-05 Score=66.84 Aligned_cols=302 Identities=11% Similarity=0.028 Sum_probs=197.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSF-NTIL 180 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~ll 180 (493)
++.-.--+-..+...|++..|+.-|+.....++ .+-.++-.-...|...|+-..|+.=+...++. +||...- ..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp-~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDP-NNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 334444556667777888888888877766421 11223333344577777777777777777763 4554321 1123
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCc---ch------------HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 011137 181 DLLCKEKKVEKAYNLFKVFRGKFKADV---IS------------YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245 (493)
Q Consensus 181 ~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~------------~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 245 (493)
..+.+.|.++.|..-|+.+.+..+.+. .. ....+..+.-.|+...|++....+++..+= |...|
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHHH
Confidence 356778888888888877765432111 11 122344556678888888888888775332 66677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH----HHH---H
Q 011137 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT----YNA---M 318 (493)
Q Consensus 246 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~---l 318 (493)
..-..+|...|++..|+.-++..-+.... +..++.-+-..+...|+.+.++...++.++. .||... |.. +
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHH
Confidence 77788888888888888777777665433 5556666777788888888888888887764 344322 111 1
Q ss_pred ------HHHHHhcCCHHHHHHHHHHHHhCCCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 011137 319 ------IQVLCKKDSVENAILVFEEMVGKGYMPNST---TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389 (493)
Q Consensus 319 ------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 389 (493)
+......++|.++.+..+...+........ .+..+-.++...+++.+|++...++.+.. +.|..++.--.
T Consensus 270 ~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRA 348 (504)
T KOG0624|consen 270 VKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRA 348 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHH
Confidence 122345678888888888877764432222 33445556667888999999999888763 44588888888
Q ss_pred HHHHhcCCHHHHHHHHHHHhcC
Q 011137 390 RYFCDAGEIERGLELFEKMGSG 411 (493)
Q Consensus 390 ~~~~~~g~~~~a~~~~~~~~~~ 411 (493)
.+|.-...++.|+.-|+...+.
T Consensus 349 eA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 349 EAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHhhhHHHHHHHHHHHHHHhc
Confidence 8998888999999999988875
No 100
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.86 E-value=3.2e-05 Score=67.25 Aligned_cols=302 Identities=11% Similarity=0.074 Sum_probs=213.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcc-hHHHHHH
Q 011137 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVI-SYNVIAN 215 (493)
Q Consensus 137 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~ 215 (493)
++.-..-+...+...|++..|+.-|....+.+ +.+-.++-.-...|...|+-..|+.-+.++.+. +||-. +----..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel-KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL-KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc-CccHHHHHHHhch
Confidence 34445556777888999999999998887643 222223333345677788888787777766653 44433 2233345
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCC--HHH------------HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011137 216 GWCLVKRTNKALEVLKEMVDRGLNPN--LTT------------YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281 (493)
Q Consensus 216 ~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 281 (493)
.+.+.|.++.|..-|+..++....-+ ... ....+..+.-.|+...|+.....+.+. .+-|...|.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~ 193 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQ 193 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHH
Confidence 67899999999999999987643211 111 223345566789999999999999887 345888899
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh----hHHHH----
Q 011137 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST----TYNVV---- 353 (493)
Q Consensus 282 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l---- 353 (493)
.-..+|...|++..|+.-++...+... -++.++..+-..+...|+.+.++...++..+. .||.. .|..+
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHH
Confidence 999999999999999988888766533 36677777888899999999999999998876 34432 12211
Q ss_pred -----HHHHHhcCCHHHHHHHHHHhhhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-HHHHHHHH
Q 011137 354 -----IRGLCHTGEMERALEFVGRMKDDECEPN---VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN-LDTYNILI 424 (493)
Q Consensus 354 -----i~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li 424 (493)
+....+.++|.++++..+...+...... ...+..+-.++...|++.+|++.-.+..+ +.|| ..++.--.
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRA 348 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRA 348 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHH
Confidence 1223456778888888888776632211 22344556667778899999999998887 4454 77888788
Q ss_pred HHHhccCCcccHHHHHHHHHHHHHC
Q 011137 425 SSMFVRKKSDDLLVAGKLLIEMVDR 449 (493)
Q Consensus 425 ~~~~~~~~~~~~~~A~~~~~~m~~~ 449 (493)
.+|.-...+++ |+.-|+...+.
T Consensus 349 eA~l~dE~YD~---AI~dye~A~e~ 370 (504)
T KOG0624|consen 349 EAYLGDEMYDD---AIHDYEKALEL 370 (504)
T ss_pred HHHhhhHHHHH---HHHHHHHHHhc
Confidence 88888888888 88888888875
No 101
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.86 E-value=2.4e-06 Score=86.86 Aligned_cols=227 Identities=15% Similarity=0.138 Sum_probs=152.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011137 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR-KCE---IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316 (493)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 316 (493)
+...|-..|......++.++|.++.++.+.. ++. --...|.++++.-...|.-+...++|+++.+.. -....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 3456666677777777888888888777664 111 113356666666666677777788888877641 1234677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCCHHHHHHHHHHHHhc
Q 011137 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC-EPNVQTYNILIRYFCDA 395 (493)
Q Consensus 317 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 395 (493)
.|...|.+.+.+++|-++++.|.++ +.-....|...+..+.+.++-+.|..++.++.+.-. .-......-.++.-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 7778888888888888888888776 223566777778888888887888888887776511 11344455566666677
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHH
Q 011137 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR--KFTFNRVLNGLLLIGNQGL 473 (493)
Q Consensus 396 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~ 473 (493)
|+.+.+..+|+..... .+--...|+.+|+.=.++|+.+. +..+|++.+..++.|. ...|...+..--..|+-+.
T Consensus 1614 GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~---vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKY---VRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred CCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHH---HHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 8888888888877664 23356778888888888887777 7788888888777766 3455555554444565544
Q ss_pred H
Q 011137 474 A 474 (493)
Q Consensus 474 a 474 (493)
+
T Consensus 1690 v 1690 (1710)
T KOG1070|consen 1690 V 1690 (1710)
T ss_pred H
Confidence 3
No 102
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.9e-05 Score=72.76 Aligned_cols=363 Identities=11% Similarity=0.044 Sum_probs=242.1
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCCH
Q 011137 111 DLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS-LNSFNTILDLLCKEKKV 189 (493)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~ 189 (493)
.+....|+++.|+..|-+.....+ ++...|..-..+|...|++++|++=-.+-.+. .|+ ...|.-...++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 456778999999999999988866 48888999999999999999998876666654 344 56788899999999999
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHH---HHHHHHHhC---CCCCCHHHHHHHHHHHHhc-------C
Q 011137 190 EKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKAL---EVLKEMVDR---GLNPNLTTYNIVLKGYFRA-------G 256 (493)
Q Consensus 190 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~---~~~~~m~~~---g~~p~~~~~~~l~~~~~~~-------g 256 (493)
++|+..|.+-.+..+.+...++.+..++.......+.. .++..+... ........|..++..+-+. .
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 99999999988877888888888888872211110000 011111100 0000112233333322111 0
Q ss_pred CHHHHHHHHHHHHHC--------C-------CCC----------------------CHHHHHHHHHHHhccCCHHHHHHH
Q 011137 257 QIEEAWRFFLEMKKR--------K-------CEI----------------------DVVTYTTIVHGFGVVGEIKRARNV 299 (493)
Q Consensus 257 ~~~~a~~~~~~~~~~--------~-------~~~----------------------~~~~~~~li~~~~~~g~~~~A~~~ 299 (493)
+.+...+....+... + ..| -..-...+.++..+..+++.|++-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 111111111111100 0 011 112244566777788889999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH-------HHHHHhcCCHHHHHHHHHH
Q 011137 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV-------IRGLCHTGEMERALEFVGR 372 (493)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~ 372 (493)
+....+.. -+..-++....+|...|.+.++...-....+.|-. ....|+.+ ..+|.+.++++.|+..|.+
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 99888764 35666677788899999988888887777766543 22333333 3356667889999999988
Q ss_pred hhhCCCCCCHHHH-------------------------HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 011137 373 MKDDECEPNVQTY-------------------------NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427 (493)
Q Consensus 373 ~~~~~~~~~~~~~-------------------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 427 (493)
.......|+...- ..=...+.+.|++..|...|.+++... +-|...|..-.-+|
T Consensus 324 aLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 324 ALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACY 402 (539)
T ss_pred HhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHH
Confidence 7765444443221 112445668899999999999998874 45788999999999
Q ss_pred hccCCcccHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011137 428 FVRKKSDDLLVAGKLLIEMVDRGFMPR-KFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485 (493)
Q Consensus 428 ~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 485 (493)
.+.|.+.. |++-.+..++. .|+ ...|..-..++....+++.|.+.+.+..++.
T Consensus 403 ~kL~~~~~---aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 403 LKLGEYPE---ALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHhhHHH---HHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999998 88888887775 444 4455555557777888999998888877764
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=8.4e-07 Score=82.16 Aligned_cols=249 Identities=12% Similarity=0.064 Sum_probs=188.2
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011137 181 DLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260 (493)
Q Consensus 181 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 260 (493)
.-+.+.|++.+|.-.|+......|.+...|..|.......++-..|+..+++..+.... +......|.-.|...|.-.+
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 34678899999999999888888889999999999999999999999999999987554 67788888889999999999
Q ss_pred HHHHHHHHHHCCCC--------CCHHHHHHHHHHHhccCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011137 261 AWRFFLEMKKRKCE--------IDVVTYTTIVHGFGVVGEIKRARNVFDGMV-NGGVLPSVATYNAMIQVLCKKDSVENA 331 (493)
Q Consensus 261 a~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a 331 (493)
|.+.++..+...++ .+...-.. ..+.....+....++|-++. ..+..+|..+...|.-.|.-.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 99999988665321 00000000 12222233455566666654 445457888899999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN-VQTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
...|+..+..... |...||.|...++...+.++|+..|+++++. .|+ +.+...|.-.|...|.+++|.+.|-..+.
T Consensus 450 iDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999987533 7789999999999999999999999999986 454 44566788889999999999998876643
Q ss_pred C---------CCCCCHHHHHHHHHHHhccCCccc
Q 011137 411 G---------VCLPNLDTYNILISSMFVRKKSDD 435 (493)
Q Consensus 411 ~---------~~~p~~~~~~~li~~~~~~~~~~~ 435 (493)
. +..++...|..|=.++...++.|-
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~ 560 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDL 560 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence 2 111234566666555555555553
No 104
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=0.00012 Score=72.67 Aligned_cols=244 Identities=14% Similarity=0.133 Sum_probs=143.2
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011137 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285 (493)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 285 (493)
....|..+..+-.+.|.+.+|++-|-+.. |+..|..+++...+.|.+++-.+++...++..-+|... +.|+-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence 34567777777777777777776665442 66677888888888888888888777777665554443 45777
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 011137 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365 (493)
Q Consensus 286 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 365 (493)
+|++.+++.+-++++. .|+......+.+-|...|.++.|.-+|... ..|..+...+...|++..
T Consensus 1175 AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred HHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHH
Confidence 7777777766555442 245555555555555555555555554322 223333333344444433
Q ss_pred HHHHHH------------------------HhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHH
Q 011137 366 ALEFVG------------------------RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421 (493)
Q Consensus 366 a~~~~~------------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 421 (493)
|.+.-+ +|...++-....-..-|+..|...|-+++.+.+++..... -......|+
T Consensus 1239 AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL-ERAHMgmfT 1317 (1666)
T KOG0985|consen 1239 AVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL-ERAHMGMFT 1317 (1666)
T ss_pred HHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch-hHHHHHHHH
Confidence 333222 2222233334455667777787888888877777765442 123455677
Q ss_pred HHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011137 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484 (493)
Q Consensus 422 ~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 484 (493)
.|.-.|.+- +++. ..+.++-.-. +...-.+++++-.+.-|.+..-++..+.++
T Consensus 1318 ELaiLYsky-kp~k---m~EHl~LFws------RvNipKviRA~eqahlW~ElvfLY~~y~ey 1370 (1666)
T KOG0985|consen 1318 ELAILYSKY-KPEK---MMEHLKLFWS------RVNIPKVIRAAEQAHLWSELVFLYDKYEEY 1370 (1666)
T ss_pred HHHHHHHhc-CHHH---HHHHHHHHHH------hcchHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 776666554 3344 2233322222 222345678888888888887777666554
No 105
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=5.9e-06 Score=69.24 Aligned_cols=158 Identities=18% Similarity=0.175 Sum_probs=83.0
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 011137 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308 (493)
Q Consensus 229 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 308 (493)
+.+.+.......+......-...|++.|++++|++...... +......=+..+.+..+++-|.+.+++|.+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-- 166 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI-- 166 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 33444444333333333444455666666777666655411 2233333344455556666666666666653
Q ss_pred CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH
Q 011137 309 LPSVATYNAMIQVLCK----KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384 (493)
Q Consensus 309 ~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 384 (493)
-+..+.+.|..++.+ .+.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..+++...... ..++.+
T Consensus 167 -ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpet 243 (299)
T KOG3081|consen 167 -DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPET 243 (299)
T ss_pred -chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHH
Confidence 244455555555543 34466666666666553 34555666666666666666666666666666553 224444
Q ss_pred HHHHHHHHHhcCC
Q 011137 385 YNILIRYFCDAGE 397 (493)
Q Consensus 385 ~~~l~~~~~~~g~ 397 (493)
...++.+-...|.
T Consensus 244 L~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 244 LANLIVLALHLGK 256 (299)
T ss_pred HHHHHHHHHHhCC
Confidence 4444444444443
No 106
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=8.6e-05 Score=73.58 Aligned_cols=321 Identities=11% Similarity=0.125 Sum_probs=214.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSL--GPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 177 (493)
..|++..+..+.++...+-+.+..++++++.-.+- ..+...-+.++-...+ -+..+..+..+++...+. |+
T Consensus 981 ~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa-~~----- 1053 (1666)
T KOG0985|consen 981 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDA-PD----- 1053 (1666)
T ss_pred cCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCc-hh-----
Confidence 34777888888888899999999999988764432 1222333444443333 345566677776665432 22
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011137 178 TILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257 (493)
Q Consensus 178 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 257 (493)
+.......+-+++|..+|+...- +..+.+.|+.- -+..+.|.++-++.- ....|..+..+-.+.|.
T Consensus 1054 -ia~iai~~~LyEEAF~ifkkf~~----n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1054 -IAEIAIENQLYEEAFAIFKKFDM----NVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred -HHHHHhhhhHHHHHHHHHHHhcc----cHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCc
Confidence 33445667778899888887543 55566666653 466777776665543 45678999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011137 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337 (493)
Q Consensus 258 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 337 (493)
..+|++-|-+. -|+..|..+++...+.|.+++-.+.+....++.-.|... +.||-+|++.++..+.++.+.
T Consensus 1120 v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~- 1190 (1666)
T KOG0985|consen 1120 VKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA- 1190 (1666)
T ss_pred hHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-
Confidence 99888776432 277889999999999999999999988887776555543 578889999998877665542
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCH
Q 011137 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417 (493)
Q Consensus 338 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 417 (493)
.|+......+..-|...|.++.|.-+|... ..|..|...+...|++..|.+.-++.. +.
T Consensus 1191 ------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ 1249 (1666)
T KOG0985|consen 1191 ------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKAN------ST 1249 (1666)
T ss_pred ------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhcc------ch
Confidence 467777788888888888888887777543 346677777778888887776655543 45
Q ss_pred HHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011137 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479 (493)
Q Consensus 418 ~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 479 (493)
.+|..+-.+|...+.+.- .+|....+.....-+..++..|...|-+++...+++
T Consensus 1250 ktWK~VcfaCvd~~EFrl--------AQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRL--------AQICGLNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred hHHHHHHHHHhchhhhhH--------HHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence 677777666665443322 223333333444445555555555555555555544
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.80 E-value=8.4e-07 Score=84.35 Aligned_cols=205 Identities=11% Similarity=0.044 Sum_probs=92.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 011137 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289 (493)
Q Consensus 210 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 289 (493)
-..+...+...|-...|..+++++. .|..++.+|...|+..+|..+..+-.+ -+|+...|..+.+....
T Consensus 401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccC
Confidence 3344444445555555555554432 233344455555555555555444443 23445555555554444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011137 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369 (493)
Q Consensus 290 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 369 (493)
..-+++|.++.+..... +-..+.....+.++++++.+.|+.-.+.+. ....+|-.+..+..+.+++..|.+.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHH
Confidence 44455555554443221 111111112234455555555544443321 1233444444444455555555555
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCccc
Q 011137 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435 (493)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 435 (493)
|....... +-+...||.+-.+|.+.|+-.+|...+++..+.+ .-+...|...+......|.+++
T Consensus 542 F~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~ed 605 (777)
T KOG1128|consen 542 FHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFED 605 (777)
T ss_pred HHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHH
Confidence 55544432 2234445555555555555555555555555443 2233344444444445555555
No 108
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.80 E-value=4.8e-06 Score=83.81 Aligned_cols=239 Identities=10% Similarity=0.066 Sum_probs=161.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 011137 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIAN 215 (493)
Q Consensus 136 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 215 (493)
.+...+..|+..+...+++++|.++.+...+.. +.....|-.+...+...++..++.-+ .++.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv----------------~~l~ 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL----------------NLID 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh----------------hhhh
Confidence 356788888888888999999999888766642 33334444444466777776665444 2222
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 011137 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295 (493)
Q Consensus 216 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 295 (493)
......++.-+..+...|.+.+ -+...+..+..+|-+.|+.+++..+++++.+... -|+.+.|.+...|... ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHH
Confidence 2333334433334444444432 2445778888999999999999999999998874 4888899999999888 9999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 011137 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375 (493)
Q Consensus 296 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 375 (493)
|++++.+.... |...+++.++.++|.++....+. +++.-.++.+.+..
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-----------------d~d~f~~i~~ki~~ 215 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-----------------DFDFFLRIERKVLG 215 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-----------------cchHHHHHHHHHHh
Confidence 99988887653 56677888888888888876322 22222333333333
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHh
Q 011137 376 D-ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428 (493)
Q Consensus 376 ~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 428 (493)
. +..--..++-.+-..|-..++++++..+++.+.+.. +-|.....-++.+|.
T Consensus 216 ~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 216 HREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred hhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 2 223345566777788888888999999999988863 236666777777776
No 109
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.80 E-value=6.9e-06 Score=78.27 Aligned_cols=110 Identities=17% Similarity=0.224 Sum_probs=70.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 011137 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327 (493)
Q Consensus 248 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 327 (493)
.+.+......+.+|+.+++.+..... -...|..+.+.|...|+++.|+++|.+.- .++-.|..|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 34555566777788888777776643 23456677777888888888888775432 24556777888888
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 011137 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370 (493)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 370 (493)
|+.|.++-.+... .......|-+-..-+-+.|++.+|.++|
T Consensus 807 w~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 807 WEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 8888777665543 2334445555555556666666666655
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.79 E-value=4.5e-06 Score=79.58 Aligned_cols=288 Identities=14% Similarity=0.074 Sum_probs=194.8
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH---hhC------------------CCCCCHHHHHHH
Q 011137 86 ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRM---KSL------------------SLGPTQKTFAII 144 (493)
Q Consensus 86 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~---~~~------------------~~~~~~~~~~~l 144 (493)
-..+++.+..+.+..-.......+.+.....++.....+-+.+| ... +.+|--..-..+
T Consensus 325 l~p~~~~iL~q~~~~w~i~~salllr~~~E~~~~RtveR~~~q~q~lv~~iq~~e~~v~nRlsy~ya~~lpp~Wq~q~~l 404 (777)
T KOG1128|consen 325 LEPLTSTLLSQTEKYWSIQASALLLRFLLESTRSRTVERALSQMQFLVKAIQMKEYSVLNRLSYIYAPHLPPIWQLQRLL 404 (777)
T ss_pred HHHHHHHHhhccCCceeeehHHHHHHHHHHhcCccchhhHHHHHHHHHHHHhhccHhHHhcccccccCCCCCcchHHHHH
Confidence 34466666666544445555666666666655544333333222 110 122333344456
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChh
Q 011137 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTN 224 (493)
Q Consensus 145 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 224 (493)
...+...|-...|+.+|+++. .|.-++.+|+..|+..+|..+..+-.+ .+|+...|..+.+......-++
T Consensus 405 aell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 405 AELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHH
Confidence 677888888888888888764 466678888888988888888776655 5778888888888877777778
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 011137 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304 (493)
Q Consensus 225 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 304 (493)
+|.++.+....+ +-..+.....+.++++++.+.|+.-.+.+ +.-..+|-.+..+..+.++++.|.+.|....
T Consensus 475 kawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 475 KAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred HHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 888777765322 22223333345788888888888777663 2356778888888888899999999998887
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCCHH
Q 011137 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE-CEPNVQ 383 (493)
Q Consensus 305 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~ 383 (493)
... +-+...||.+-.+|.+.++-.+|...+.+..+.+.. +...|-..+-...+.|.+++|.+.+.++.... ...|..
T Consensus 547 tL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~ 624 (777)
T KOG1128|consen 547 TLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDE 624 (777)
T ss_pred hcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccch
Confidence 742 235668999999999999999999999998888743 45566666667788899999999988886641 122444
Q ss_pred HHHHHHHHHH
Q 011137 384 TYNILIRYFC 393 (493)
Q Consensus 384 ~~~~l~~~~~ 393 (493)
+...++....
T Consensus 625 vl~~iv~~~~ 634 (777)
T KOG1128|consen 625 VLLIIVRTVL 634 (777)
T ss_pred hhHHHHHHHH
Confidence 5444444443
No 111
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.77 E-value=2.4e-06 Score=74.83 Aligned_cols=59 Identities=12% Similarity=0.024 Sum_probs=32.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011137 283 IVHGFGVVGEIKRARNVFDGMVNGGV--LPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341 (493)
Q Consensus 283 li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 341 (493)
+...|.+.|++++|+..+++..+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44455566666666666666555321 112345556666666666666666666555543
No 112
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.75 E-value=2.4e-06 Score=74.85 Aligned_cols=60 Identities=13% Similarity=0.108 Sum_probs=47.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 011137 317 AMIQVLCKKDSVENAILVFEEMVGKGY--MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376 (493)
Q Consensus 317 ~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 376 (493)
.+...|.+.|++++|...++...+... +.....+..+..++...|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456678889999999999998887632 123567888889999999999999988888764
No 113
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=8e-05 Score=72.20 Aligned_cols=209 Identities=14% Similarity=0.151 Sum_probs=124.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-C-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSL-S-------LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 173 (493)
+...|..+.+.|.+.++.+-|.-.+-.|... | ...+..+-..+.-.....|..++|+.+|++-++.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~------ 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY------ 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH------
Confidence 4568999999999998888887777666432 1 1111133333444456788999999999887763
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH----------HhCCC-----
Q 011137 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM----------VDRGL----- 238 (493)
Q Consensus 174 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m----------~~~g~----- 238 (493)
..|-..|-..|.+++|.++-+.=.. +. -..||.....-+...++.+.|++.|++. ....+
T Consensus 830 ---DLlNKlyQs~g~w~eA~eiAE~~DR-iH-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~ 904 (1416)
T KOG3617|consen 830 ---DLLNKLYQSQGMWSEAFEIAETKDR-IH-LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQ 904 (1416)
T ss_pred ---HHHHHHHHhcccHHHHHHHHhhccc-ee-hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHH
Confidence 3344567778999999877653221 11 1236667777777788888888888763 21111
Q ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH
Q 011137 239 ----NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314 (493)
Q Consensus 239 ----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 314 (493)
..|...|......+-..|+.+.|+.+|...+. |-.+++..|-.|+.++|-++-++- -|...
T Consensus 905 Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AA 969 (1416)
T KOG3617|consen 905 YVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAA 969 (1416)
T ss_pred HHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHH
Confidence 12445555566666677888888887776544 233444444445555544443331 13333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 011137 315 YNAMIQVLCKKDSVENAILVFE 336 (493)
Q Consensus 315 ~~~li~~~~~~~~~~~a~~~~~ 336 (493)
...+.+.|-..|++.+|...|.
T Consensus 970 cYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 970 CYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred HHHHHHHhhhhHHHHHHHHHHH
Confidence 3444445555555555544443
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.73 E-value=3.1e-06 Score=70.93 Aligned_cols=158 Identities=13% Similarity=0.130 Sum_probs=93.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcC
Q 011137 142 AIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVK 221 (493)
Q Consensus 142 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 221 (493)
...-..+...|+-+....+....... .+.|....+.++....+.|++..|...|.+.....++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 44445555556655555555543322 13344455556666666666666666666666666666666666666666666
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 011137 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301 (493)
Q Consensus 222 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 301 (493)
++++|..-|.+..+.... +...++.+.-.+.-.|+.+.|..++......+.. |..+-..+.......|++++|.++..
T Consensus 149 r~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 666666666666654332 4455566666666666666666666666555332 55555556666666666666666654
Q ss_pred H
Q 011137 302 G 302 (493)
Q Consensus 302 ~ 302 (493)
.
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 4
No 115
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=2e-05 Score=76.25 Aligned_cols=241 Identities=17% Similarity=0.211 Sum_probs=170.4
Q ss_pred CCHHHHHHHHH--HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C--------C
Q 011137 101 HSPSSFDHAID--LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH-G--------C 169 (493)
Q Consensus 101 ~~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~--------~ 169 (493)
.|..+-..+++ .|...|+.+.|.+-.+.++ +..+|..+.+.|.+..+.|-|.-.+..|... | -
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 46777777765 5677899999988877765 4568999999999999998887777666421 1 0
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011137 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL 249 (493)
Q Consensus 170 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 249 (493)
.++ ..-..+.......|.+++|..+|.+-+. |..|=+.|...|.+++|+++-+.=-+..++ .||..-.
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA 865 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYA 865 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHH
Confidence 121 2222233345677999999999987553 456667788899999999887654333222 4566666
Q ss_pred HHHHhcCCHHHHHHHHHHH----------HHCC---------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 011137 250 KGYFRAGQIEEAWRFFLEM----------KKRK---------CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310 (493)
Q Consensus 250 ~~~~~~g~~~~a~~~~~~~----------~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 310 (493)
..+-..++.+.|++.|++. .... -..|...|.-....+...|+.+.|+.+|.....
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 6666778888888887652 2211 123555666666677788888888888876654
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 011137 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374 (493)
Q Consensus 311 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 374 (493)
|-.+++..|-.|+.++|-.+-++-- |......+.+.|...|++.+|..+|.++.
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5667788888899999988776532 55566678889999999999999988765
No 116
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.70 E-value=4.9e-06 Score=69.91 Aligned_cols=119 Identities=8% Similarity=0.097 Sum_probs=72.1
Q ss_pred cCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--HHHHH
Q 011137 186 EKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY-FRAGQ--IEEAW 262 (493)
Q Consensus 186 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~-~~~g~--~~~a~ 262 (493)
.++.+++...++......+.|...|..+...|...|++++|...|++..+.... +...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 445555555555555555566666666666666666666666666666665433 455555555543 44455 36666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 011137 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306 (493)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 306 (493)
+++++..+.+.. +..++..+...+.+.|++++|+..|+++.+.
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 666666666443 5566666666666666666666666666654
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.69 E-value=5.7e-06 Score=69.50 Aligned_cols=150 Identities=9% Similarity=0.102 Sum_probs=112.7
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH
Q 011137 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV 189 (493)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 189 (493)
+..|...|+++.+....+.+... . ..+...++.++++..++...+.+ +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 45677788877764444322211 0 01223566677777777777654 67788899999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHH-HhcCC--hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011137 190 EKAYNLFKVFRGKFKADVISYNVIANGW-CLVKR--TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266 (493)
Q Consensus 190 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 266 (493)
++|...|++.....+.+...+..+..++ ...|+ .++|.+++++..+.+.. +..++..+...+.+.|++++|+..|+
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999888877777888888888864 66677 48999999999887665 77788888888999999999999999
Q ss_pred HHHHCCC
Q 011137 267 EMKKRKC 273 (493)
Q Consensus 267 ~~~~~~~ 273 (493)
++.+...
T Consensus 169 ~aL~l~~ 175 (198)
T PRK10370 169 KVLDLNS 175 (198)
T ss_pred HHHhhCC
Confidence 9888743
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.68 E-value=6.4e-06 Score=69.08 Aligned_cols=164 Identities=9% Similarity=0.069 Sum_probs=116.9
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011137 172 SLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251 (493)
Q Consensus 172 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 251 (493)
|..+ ..+-..+.-.|+-+.+..+........+.|......++....+.|++.+|...+.+..... .+|..+|+.+.-+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaa 143 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAA 143 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHH
Confidence 3444 4455566667777777776666555555566666667788888888888888888887654 3477888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011137 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331 (493)
Q Consensus 252 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 331 (493)
|.+.|++++|..-|.+..+.... +...++.|.-.|.-.|+.+.|..++......+. -|...-..+..+....|++++|
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 144 LDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHH
Confidence 88888888888888887776433 666777777777788888888888877776533 2666666777777778888888
Q ss_pred HHHHHHHH
Q 011137 332 ILVFEEMV 339 (493)
Q Consensus 332 ~~~~~~~~ 339 (493)
..+...-.
T Consensus 222 ~~i~~~e~ 229 (257)
T COG5010 222 EDIAVQEL 229 (257)
T ss_pred Hhhccccc
Confidence 77765443
No 119
>PF12854 PPR_1: PPR repeat
Probab=98.67 E-value=3.5e-08 Score=55.76 Aligned_cols=32 Identities=44% Similarity=0.954 Sum_probs=16.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268 (493)
Q Consensus 237 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 268 (493)
|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
No 120
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.67 E-value=9.3e-05 Score=73.32 Aligned_cols=384 Identities=11% Similarity=-0.018 Sum_probs=229.0
Q ss_pred ChHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011137 82 HALKALHFFNILS-YHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160 (493)
Q Consensus 82 ~~~~A~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 160 (493)
+...|++.|-... ..+. -...|..+...|....+...|...|+..-+... .+..........|++..+++.|..+
T Consensus 473 ~~~~al~ali~alrld~~---~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS---LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hHHHHHHHHHHHHhcccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHH
Confidence 3445666554433 3332 345899999999888899999999999887653 4678889999999999999999998
Q ss_pred HHHHHhCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 011137 161 FLSMHEHG-CRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239 (493)
Q Consensus 161 ~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 239 (493)
.-..-+.. ...-..-|....-.|.+.++...|..-|+......|.|...|..++.+|..+|++..|+++|.+.... .
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 43332211 00111223344556778899999999999888888889999999999999999999999999998765 3
Q ss_pred CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHhccCCHHHHHHHHH-------HHHH
Q 011137 240 PNL-TTYNIVLKGYFRAGQIEEAWRFFLEMKKRK------CEIDVVTYTTIVHGFGVVGEIKRARNVFD-------GMVN 305 (493)
Q Consensus 240 p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~-------~~~~ 305 (493)
|+. ..--...-..+..|++.++...+..+.... -.--..++-.+...+...|-..+|..+++ -...
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 332 122223334567899999998888776541 11112333333333333343333333333 3332
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHH--H----HHHHH-HHHHhCCC--------------------CCChhhHHHHHHHHH
Q 011137 306 GGVLPSVATYNAMIQVLCKKDSVE--N----AILVF-EEMVGKGY--------------------MPNSTTYNVVIRGLC 358 (493)
Q Consensus 306 ~~~~~~~~~~~~li~~~~~~~~~~--~----a~~~~-~~~~~~~~--------------------~~~~~~~~~li~~~~ 358 (493)
....-+...|-.+-++|.-.-..+ . ...++ .+....+. ..+..+|..++..|.
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence 221223333333222221100000 0 00000 11111111 112334444443332
Q ss_pred h-------c-CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcc
Q 011137 359 H-------T-GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430 (493)
Q Consensus 359 ~-------~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 430 (493)
+ . .+...|...+...++.. ..+..+|+.|.-. ...|++.-|...|-+-... .+....+|..+.-.+.+.
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n 863 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLEN 863 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEec
Confidence 2 1 22346777777777653 3466777777666 5567777777777665553 234567788887778888
Q ss_pred CCcccHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 011137 431 KKSDDLLVAGKLLIEMVDRGFMPR-KFTFNRVLNGLLLIGNQGLAKEILR 479 (493)
Q Consensus 431 ~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 479 (493)
.+++. |...|...+.. .|+ ...|..........|+.-++..++.
T Consensus 864 ~d~E~---A~~af~~~qSL--dP~nl~~WlG~Ali~eavG~ii~~~~lfa 908 (1238)
T KOG1127|consen 864 QDFEH---AEPAFSSVQSL--DPLNLVQWLGEALIPEAVGRIIERLILFA 908 (1238)
T ss_pred ccHHH---hhHHHHhhhhc--CchhhHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 88888 77788777764 343 5555544444555677666666664
No 121
>PF12854 PPR_1: PPR repeat
Probab=98.67 E-value=4.1e-08 Score=55.45 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=26.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011137 449 RGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481 (493)
Q Consensus 449 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 481 (493)
+|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 367788888888888888888888888888776
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.66 E-value=1.5e-05 Score=80.44 Aligned_cols=171 Identities=11% Similarity=0.084 Sum_probs=119.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 179 (493)
+.+...+..++..+...+++++|.++.+......+ -....|..+...+.+.++.+.+..+ . +
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P-~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~ 89 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHK-KSISALYISGILSLSRRPLNDSNLL--N---------------L 89 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-cceehHHHHHHHHHhhcchhhhhhh--h---------------h
Confidence 44778999999999999999999999997776542 2334444444477777776666554 2 2
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 011137 180 LDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259 (493)
Q Consensus 180 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 259 (493)
+.......++.....+...+.. ...+..++..++.+|-+.|+.++|..+|+++.+.... |..+.|.+...|... +++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~-~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILL-YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhhcccccchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHH
Confidence 2333333333222222333332 3335557788889999999999999999999888744 788888899888888 999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 011137 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306 (493)
Q Consensus 260 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 306 (493)
+|.+++.+.... |...+++..+.+++.++...
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 999888877654 44555666777777776664
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.64 E-value=2.9e-05 Score=77.53 Aligned_cols=148 Identities=11% Similarity=0.106 Sum_probs=113.6
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 011137 169 CRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248 (493)
Q Consensus 169 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 248 (493)
.+.+...+-.|.......|.+++|..+++...+..|.+......++..+.+.+++++|+..+++..+.... +......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 45567778888888888888888888888888777777778888888888888888888888888877554 66677778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011137 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319 (493)
Q Consensus 249 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 319 (493)
..++.+.|++++|..+|+++...+. -+..++..+...+...|+.++|...|++..+. ..+....|+..+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 8888888888888888888887433 35777888888888888888888888888765 223445555443
No 124
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=4.2e-05 Score=63.80 Aligned_cols=187 Identities=11% Similarity=0.086 Sum_probs=120.2
Q ss_pred CCHHHHHHHHHHHHh---CC-CCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHH
Q 011137 152 GKADRAVKIFLSMHE---HG-CRQSLN-SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKA 226 (493)
Q Consensus 152 g~~~~a~~~~~~~~~---~~-~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 226 (493)
.+.++.++++.++.. .| ..++.. .|..++-+....|+.+.|...++.+..++|.+...--.-.-.+-..|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 345666666665542 22 334443 3455556667778888888888887777654444433333344457788888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 011137 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306 (493)
Q Consensus 227 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 306 (493)
+++++.+.+.+.. |.+++..-+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.+++++-.
T Consensus 106 ~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 8888888776533 6666766666666677777777777777776 4557888888888888888888888888887664
Q ss_pred CCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Q 011137 307 GVLPSVATYNAMIQVLCKKD---SVENAILVFEEMVGK 341 (493)
Q Consensus 307 ~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~ 341 (493)
. +.+...+..+...+.-.| +.+.+.++|.+..+.
T Consensus 184 ~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 184 Q-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred C-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 2 224444555555544433 455566677766665
No 125
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.62 E-value=4e-05 Score=73.26 Aligned_cols=343 Identities=16% Similarity=0.141 Sum_probs=198.7
Q ss_pred HHHHHHHhhChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 011137 73 DQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAG 152 (493)
Q Consensus 73 ~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 152 (493)
...+..+....+.|..+|-. +. .-...|..|.....|++++.+-+. .|.+.-...-.+.++.+...|
T Consensus 537 ra~lail~kkfk~ae~ifle---qn-------~te~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~ 603 (1636)
T KOG3616|consen 537 RAMLAILEKKFKEAEMIFLE---QN-------ATEEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTG 603 (1636)
T ss_pred HHHHHHHHhhhhHHHHHHHh---cc-------cHHHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcC
Confidence 34455566677777777632 21 234567778888889988876543 344333444556667777788
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 011137 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232 (493)
Q Consensus 153 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 232 (493)
+-++|-++-+ . +-. -.+.|+.|.+.|....|.+....= +....|......+..++.+..-+++|-.+|++
T Consensus 604 qd~ka~elk~----s----dgd-~laaiqlyika~~p~~a~~~a~n~-~~l~~de~il~~ia~alik~elydkagdlfek 673 (1636)
T KOG3616|consen 604 QDEKAAELKE----S----DGD-GLAAIQLYIKAGKPAKAARAALND-EELLADEEILEHIAAALIKGELYDKAGDLFEK 673 (1636)
T ss_pred chhhhhhhcc----c----cCc-cHHHHHHHHHcCCchHHHHhhcCH-HHhhccHHHHHHHHHHHHhhHHHHhhhhHHHH
Confidence 8777765421 1 111 124577888888877776543110 01122444444444444444444444444444
Q ss_pred HHhC----------------------CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 011137 233 MVDR----------------------GLNPNLTTY-NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289 (493)
Q Consensus 233 m~~~----------------------g~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 289 (493)
+..- .++..+++. ......+...|+++.|+.-|-+... .-..+.+...
T Consensus 674 i~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~ 744 (1636)
T KOG3616|consen 674 IHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIG 744 (1636)
T ss_pred hhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhh
Confidence 3210 000011111 1112223344455555444433211 1223455667
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011137 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369 (493)
Q Consensus 290 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 369 (493)
...+.+|+.+++.++..+. -..-|..+.+.|...|+++.|.++|.+. ..++-.|..|.+.|+|+.|.++
T Consensus 745 akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHH
Confidence 7888999999988877533 2345777889999999999999998653 2355678889999999999988
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHC
Q 011137 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449 (493)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~ 449 (493)
-.+... .......|-.-..-+-+.|++.+|.++|-.+.+ |+. .|..|-+.|..++ .+++.++-
T Consensus 814 a~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~dd---mirlv~k~--- 876 (1636)
T KOG3616|consen 814 AEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDD---MIRLVEKH--- 876 (1636)
T ss_pred HHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchH---HHHHHHHh---
Confidence 777653 244555666666777788888888888755543 442 3556667777777 55554442
Q ss_pred CCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Q 011137 450 GFMPR--KFTFNRVLNGLLLIGNQGLAKEI 477 (493)
Q Consensus 450 g~~p~--~~~~~~l~~~~~~~g~~~~a~~~ 477 (493)
.|+ ..|-..+..-+...|+.+.|.+-
T Consensus 877 --h~d~l~dt~~~f~~e~e~~g~lkaae~~ 904 (1636)
T KOG3616|consen 877 --HGDHLHDTHKHFAKELEAEGDLKAAEEH 904 (1636)
T ss_pred --ChhhhhHHHHHHHHHHHhccChhHHHHH
Confidence 222 34444555555555555555443
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.59 E-value=1.2e-05 Score=80.11 Aligned_cols=214 Identities=11% Similarity=0.098 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhh--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011137 103 PSSFDHAIDLAARLRDYRTVWTLVHRMKS--LSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180 (493)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 180 (493)
......+=.++.+.+....+..-+-++.. +....++.++..|.....+.|.+++|..+++...+.. +.+......+.
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a 127 (694)
T PRK15179 49 RELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILML 127 (694)
T ss_pred HHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHH
Confidence 44556666677777777666555555432 2355679999999999999999999999999999864 45567788889
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011137 181 DLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260 (493)
Q Consensus 181 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 260 (493)
..+.+.+++++|...+++.....+.+....+.+..++.+.|++++|..+|+++...+.. +..++..+...+-..|+.++
T Consensus 128 ~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~ 206 (694)
T PRK15179 128 RGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWR 206 (694)
T ss_pred HHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999888888899999999999999999999999999985443 57899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhc
Q 011137 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG----VLPSVATYNAMIQVLCKK 325 (493)
Q Consensus 261 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~li~~~~~~ 325 (493)
|...|+...+.. .+...-|+.++ +++..-...++++.-.+ ..........+|..|.+.
T Consensus 207 A~~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 207 ARDVLQAGLDAI-GDGARKLTRRL------VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHHhh-CcchHHHHHHH------HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 999999998863 33445555443 33444555666654332 223344556666666554
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.58 E-value=0.00012 Score=67.20 Aligned_cols=117 Identities=14% Similarity=0.066 Sum_probs=53.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 011137 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS-VATYNAMIQVLCKKDSVENAI 332 (493)
Q Consensus 254 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~ 332 (493)
..|++++|+..++.+... .+-|+..+....+.+.+.++.++|.+.++++... .|+ ....-.+..+|.+.|+..+|.
T Consensus 318 ~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHH
Confidence 344455555555554443 2224444444444455555555555555554443 122 333334444455555555555
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 011137 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374 (493)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 374 (493)
.+++....... -|+..|..|.++|...|+..++..-..+..
T Consensus 395 ~~L~~~~~~~p-~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 395 RILNRYLFNDP-EDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHhhcCC-CCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 55544444322 244445555555555555444444444443
No 128
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=3.8e-05 Score=64.51 Aligned_cols=249 Identities=15% Similarity=0.139 Sum_probs=153.4
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 011137 111 DLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190 (493)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 190 (493)
+-+.=.|++..++..-....... .+...-..+.++|...|.+...+. ++.... .+.......+......-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhH
Confidence 33444677777766665554432 355556667777877877654433 232222 233333333333333333333
Q ss_pred HHH-HHHHHhhcC-CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 191 KAY-NLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268 (493)
Q Consensus 191 ~A~-~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 268 (493)
+-. ++.+.+... ...+......-...|+..|++++|++..+... +......=..++.+..+.+-|.+.+++|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 233333332 22232333444566888899999988877622 3334444456667788889999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHh----ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011137 269 KKRKCEIDVVTYTTIVHGFG----VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344 (493)
Q Consensus 269 ~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 344 (493)
.+.. +..+.+.|..++. ..+.+.+|.-+|++|.++ ..|+..+.+-...++...|++++|..++++...+...
T Consensus 164 q~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 164 QQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred Hccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 8753 4556666666654 345788999999998875 5678888888888888999999999999998887544
Q ss_pred CChhhHHHHHHHHHhcCCH-HHHHHHHHHhhhC
Q 011137 345 PNSTTYNVVIRGLCHTGEM-ERALEFVGRMKDD 376 (493)
Q Consensus 345 ~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~ 376 (493)
++.+...++-+-...|.. +-..+.+..+...
T Consensus 240 -dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 240 -DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred -CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 566666666555555654 3344555555544
No 129
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.56 E-value=3.4e-06 Score=67.00 Aligned_cols=95 Identities=12% Similarity=-0.059 Sum_probs=57.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc
Q 011137 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV 220 (493)
Q Consensus 141 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 220 (493)
+......+...|++++|...|+...... +.+...|..+..++...|++++|...|+......+.+...+..+..++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 3344555566666666666666665543 345556666666666666666666666666555555666666666666666
Q ss_pred CChhHHHHHHHHHHhC
Q 011137 221 KRTNKALEVLKEMVDR 236 (493)
Q Consensus 221 ~~~~~A~~~~~~m~~~ 236 (493)
|++++|...|+...+.
T Consensus 106 g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 106 GEPGLAREAFQTAIKM 121 (144)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6666666666666554
No 130
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=0.00014 Score=60.85 Aligned_cols=163 Identities=14% Similarity=0.118 Sum_probs=77.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 011137 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185 (493)
Q Consensus 106 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 185 (493)
|..++-+....|+.+.|...++.+..+- +-+..+-..-.-.+-..|++++|+++|+.+.+.+ +.|..++-.-+...-.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 3344444444555555555555555442 2233332222333344555555555555555443 3344444444444444
Q ss_pred cCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHH
Q 011137 186 EKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG---QIEEAW 262 (493)
Q Consensus 186 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g---~~~~a~ 262 (493)
.|+--+|++-+....+.+..|...|.-+...|...|++++|.-.++++.-..+. +...+..+...+.-.| +.+.+.
T Consensus 133 ~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-NPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555543221 2333333444333333 233444
Q ss_pred HHHHHHHHC
Q 011137 263 RFFLEMKKR 271 (493)
Q Consensus 263 ~~~~~~~~~ 271 (493)
+.|.+..+.
T Consensus 212 kyy~~alkl 220 (289)
T KOG3060|consen 212 KYYERALKL 220 (289)
T ss_pred HHHHHHHHh
Confidence 444444443
No 131
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.48 E-value=7.2e-06 Score=65.11 Aligned_cols=95 Identities=12% Similarity=-0.054 Sum_probs=60.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011137 176 FNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255 (493)
Q Consensus 176 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 255 (493)
+..+...+...|++++|...|+......+.+...|..+..++...|++++|...|++....... +...+..+..++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHc
Confidence 3344555666666666666666666555556666666666666666666666666666655433 555666666666666
Q ss_pred CCHHHHHHHHHHHHHC
Q 011137 256 GQIEEAWRFFLEMKKR 271 (493)
Q Consensus 256 g~~~~a~~~~~~~~~~ 271 (493)
|+.++|+..|+...+.
T Consensus 106 g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 106 GEPGLAREAFQTAIKM 121 (144)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6666666666666654
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=9.7e-05 Score=67.67 Aligned_cols=239 Identities=11% Similarity=0.052 Sum_probs=148.0
Q ss_pred HHHHHHhhChHHHHHHHHHhhc---CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC--CCCCHHHHHHHHHHH
Q 011137 74 QIIKRLWNHALKALHFFNILSY---HPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLS--LGPTQKTFAIIAERY 148 (493)
Q Consensus 74 ~~l~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~ 148 (493)
..+.+...++..-.+||+.+.. ..+.+| ... +..=.-..+...+...-+.+...+ -.|+.......+...
T Consensus 210 ~~L~raGydp~gM~~ff~rl~~~~~~~~~~p-~yl----~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~ 284 (484)
T COG4783 210 TTLVRAGYDPQGMPEFFERLADQLRYGGQPP-EYL----LTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAK 284 (484)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHHhcCCCCC-hHH----hcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHH
Confidence 4444445566667788888762 222222 111 111111122233333344443322 234555556666554
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHH
Q 011137 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALE 228 (493)
Q Consensus 149 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 228 (493)
.....-..+..++.+..+.+ -..--|.. ...+...|+++.|+..++.+....|.|+..+......+.+.++..+|.+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~--~~aa~YG~-A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e 361 (484)
T COG4783 285 YEALPNQQAADLLAKRSKRG--GLAAQYGR-ALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIE 361 (484)
T ss_pred hccccccchHHHHHHHhCcc--chHHHHHH-HHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 44443333433333332211 11222333 3345567888888888888887777788888888888888888888888
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 011137 229 VLKEMVDRGLNPN-LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307 (493)
Q Consensus 229 ~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 307 (493)
.++++.... |+ ......+..++.+.|++.+|+++++....... .|+..|..|..+|...|+..++..-..+....
T Consensus 362 ~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p-~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~- 437 (484)
T COG4783 362 RLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP-EDPNGWDLLAQAYAELGNRAEALLARAEGYAL- 437 (484)
T ss_pred HHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC-CCchHHHHHHHHHHHhCchHHHHHHHHHHHHh-
Confidence 888888763 34 45566778888888888888888888877744 48888888888888888888888887776653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011137 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341 (493)
Q Consensus 308 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 341 (493)
.|+++.|...+....+.
T Consensus 438 -----------------~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 438 -----------------AGRLEQAIIFLMRASQQ 454 (484)
T ss_pred -----------------CCCHHHHHHHHHHHHHh
Confidence 35666666666666554
No 133
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.45 E-value=0.0022 Score=63.30 Aligned_cols=219 Identities=13% Similarity=0.121 Sum_probs=119.3
Q ss_pred ChHHHHHHHHHhhcCCCCCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011137 82 HALKALHFFNILSYHPTYAHSPSSFDHAID--LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159 (493)
Q Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 159 (493)
+.++|+.-.+.+.++.+-. .|..++. .+.+.|..++|..+++.....+.. |..|...+-.+|.+.|+.++|..
T Consensus 24 qfkkal~~~~kllkk~Pn~----~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPNA----LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 4567777777765543222 2333333 245677888888777777665543 77777888888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc-CCh---------hHHHHH
Q 011137 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV-KRT---------NKALEV 229 (493)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~---------~~A~~~ 229 (493)
+|+..... -|+......+..+|.+.+.+.+-.+.--++.+.++.+...+=.+++..... ... .-|.+.
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 88887764 355666666777777777665533332233333333444333333333321 111 223344
Q ss_pred HHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 011137 230 LKEMVDRG-LNPNLTTYNIVLKGYFRAGQIEEAWRFF-LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307 (493)
Q Consensus 230 ~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 307 (493)
++.+.+.+ ..-+..-...-...+...|++++|+.++ ....+.-...+...-+.-+..+...+++.+..++-.++...|
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 44444332 1111222222233344566677777776 333333333344444455566666666666666666665554
No 134
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.42 E-value=0.00044 Score=68.77 Aligned_cols=335 Identities=12% Similarity=0.011 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCc--chHHHHHH
Q 011137 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADV--ISYNVIAN 215 (493)
Q Consensus 138 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~l~~ 215 (493)
...|..+...|....+..+|.+.|+...+.+ .-+...+....+.|++..+++.|..+.-...+..+.-. ..|....-
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 4578888888888888889999999888765 45677788888999999999999888443333222111 22334555
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 011137 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295 (493)
Q Consensus 216 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 295 (493)
.|.+.++...|...|+...+..+. |...|..++.+|...|++..|.++|.+....++. +...---..-.-+..|.+.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~-s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL-SKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-hHHHHHHHHHHHHHhhhHHH
Confidence 677888999999999988887655 7788999999999999999999999888776332 22222223334567888999
Q ss_pred HHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-------HHhCCCCCChhhHHHHHHHHH----
Q 011137 296 ARNVFDGMVNG------GVLPSVATYNAMIQVLCKKDSVENAILVFEE-------MVGKGYMPNSTTYNVVIRGLC---- 358 (493)
Q Consensus 296 A~~~~~~~~~~------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-------~~~~~~~~~~~~~~~li~~~~---- 358 (493)
|...+..+... +..--..++..+...+.-.|-..+|...++. ........+...|-.+-.+|.
T Consensus 649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q 728 (1238)
T KOG1127|consen 649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQ 728 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHH
Confidence 98888877542 1111122333333333333333333333322 222211112222222222221
Q ss_pred -------------------hcCCH---H---HHHHHHHHhhhCCCCCCHHHHHHHHHHHHh----c----CCHHHHHHHH
Q 011137 359 -------------------HTGEM---E---RALEFVGRMKDDECEPNVQTYNILIRYFCD----A----GEIERGLELF 405 (493)
Q Consensus 359 -------------------~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~----g~~~~a~~~~ 405 (493)
..+.. + -+.+.+-.-.+ ...+..+|..|+..|.+ . .+...|...+
T Consensus 729 ~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~ 806 (1238)
T KOG1127|consen 729 EEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCC 806 (1238)
T ss_pred hcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHH
Confidence 11111 1 01111111111 11223344444444433 1 2334677777
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483 (493)
Q Consensus 406 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (493)
++.++. ...+..+|+.|.-. ...|.+.- |.--|-+-... .+-+..+|..+.-.+.+..+++-|.+.+.+..-
T Consensus 807 KkaV~L-~ann~~~WnaLGVl-sg~gnva~---aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 807 KKAVSL-CANNEGLWNALGVL-SGIGNVAC---AQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHH-hhccHHHHHHHHHh-hccchhhh---hhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 777664 33466677776544 44455544 55555544433 133466777777777888888888888876654
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.35 E-value=2.7e-05 Score=61.40 Aligned_cols=94 Identities=15% Similarity=0.060 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 011137 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289 (493)
Q Consensus 210 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 289 (493)
...+...+...|++++|.+.++.+...+.. +...+..+...+.+.|++++|..+++...+.+ +.+...+..+...|..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 333344444444444444444444433221 33344444444444444444444444443332 1133333444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 011137 290 VGEIKRARNVFDGMVN 305 (493)
Q Consensus 290 ~g~~~~A~~~~~~~~~ 305 (493)
.|++++|...|+...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4444444444444443
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.34 E-value=2.6e-05 Score=61.50 Aligned_cols=97 Identities=15% Similarity=0.121 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHH
Q 011137 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWC 218 (493)
Q Consensus 139 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 218 (493)
.....+...+...|++++|.+.++.+...+ +.+...+..+..++...|++++|...++......+.+...+..+...+.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 334445555555566666666665555433 3344555555555555566666665555555444445555555555555
Q ss_pred hcCChhHHHHHHHHHHhC
Q 011137 219 LVKRTNKALEVLKEMVDR 236 (493)
Q Consensus 219 ~~~~~~~A~~~~~~m~~~ 236 (493)
..|++++|.+.|+...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666555543
No 137
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.31 E-value=0.0031 Score=58.83 Aligned_cols=185 Identities=9% Similarity=0.098 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011137 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV---GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335 (493)
Q Consensus 259 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 335 (493)
+++.++++.....-...+..+|..+...--.. ...+...+.++++...-..--..+|...+..-.+..-.+.|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 44555555544432222344444443322111 235666777777665422223457888888888999999999999
Q ss_pred HHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 011137 336 EEMVGKGYMP-NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414 (493)
Q Consensus 336 ~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 414 (493)
.++.+.+..+ +....++++..+|. ++.+-|.++|+--.+. ..-+..--...++.+...|+-..+..+|++....++.
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 9999987776 77888899988874 7889999999987765 2334455567788888999999999999999998666
Q ss_pred CC--HHHHHHHHHHHhccCCcccHHHHHHHHHHHHH
Q 011137 415 PN--LDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448 (493)
Q Consensus 415 p~--~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~ 448 (493)
+| ..+|..++.-=..-|+... +.++-+++..
T Consensus 468 ~~ks~~Iw~r~l~yES~vGdL~s---i~~lekR~~~ 500 (656)
T KOG1914|consen 468 ADKSKEIWDRMLEYESNVGDLNS---ILKLEKRRFT 500 (656)
T ss_pred hhhhHHHHHHHHHHHHhcccHHH---HHHHHHHHHH
Confidence 55 5789999987777888887 7777776654
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.24 E-value=7.9e-05 Score=59.41 Aligned_cols=115 Identities=12% Similarity=0.138 Sum_probs=55.4
Q ss_pred cCCHHHHHHHHHHhhcCCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHH
Q 011137 186 EKKVEKAYNLFKVFRGKFKADV---ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL--TTYNIVLKGYFRAGQIEE 260 (493)
Q Consensus 186 ~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~ 260 (493)
.++...+...++.+....+.+. ...-.+...+...|++++|...|++.......++. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555554433331 22333445555556666666666655554422221 223334555555566666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 011137 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302 (493)
Q Consensus 261 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 302 (493)
|+..++..... ......+....++|.+.|+.++|...|+.
T Consensus 104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66555443222 12333444555555555555555555543
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.24 E-value=4.1e-05 Score=70.66 Aligned_cols=122 Identities=16% Similarity=0.213 Sum_probs=67.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 011137 107 DHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186 (493)
Q Consensus 107 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 186 (493)
..++..+...++++.|..+++++.+.. |+ ....+++.+...++-.+|++++.+..+.. +.+...+..-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 334444444556666666666665543 22 23335555555556666666666555432 33444455455555566
Q ss_pred CCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 011137 187 KKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233 (493)
Q Consensus 187 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 233 (493)
++.+.|+.+.++.....|.+..+|..|..+|.+.|+++.|+..++.+
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 66666666666655555555556666666666666666666555544
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.22 E-value=7.4e-05 Score=69.02 Aligned_cols=89 Identities=16% Similarity=0.112 Sum_probs=37.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 011137 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327 (493)
Q Consensus 248 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 327 (493)
+++.+...++-.+|.+++++..+.. +.+......-...+.+.++++.|+++.+++.+.. +-+..+|..|..+|...|+
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d 283 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGD 283 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCC
Confidence 3344444444444444444444331 1133333333444444444444444444444421 1122344444444444444
Q ss_pred HHHHHHHHHHH
Q 011137 328 VENAILVFEEM 338 (493)
Q Consensus 328 ~~~a~~~~~~~ 338 (493)
++.|+..++.+
T Consensus 284 ~e~ALlaLNs~ 294 (395)
T PF09295_consen 284 FENALLALNSC 294 (395)
T ss_pred HHHHHHHHhcC
Confidence 44444444433
No 141
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.20 E-value=0.0084 Score=59.47 Aligned_cols=223 Identities=10% Similarity=0.090 Sum_probs=146.9
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH
Q 011137 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA--ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEK 191 (493)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 191 (493)
...+++..|..-...+.+.. |+.. |..++ -...+.|+.++|..+++.....+. .|..+...+-.+|.+.|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhH
Confidence 45678899999888887763 3432 22222 345688999999999888776553 378889999999999999999
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------CHHHH
Q 011137 192 AYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG----------QIEEA 261 (493)
Q Consensus 192 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g----------~~~~a 261 (493)
|..+|++..+..|. ......+..+|.+.+++.+-.+.--+|.+. ..-+...+=.+++.....- -..-|
T Consensus 96 ~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 96 AVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 99999999887665 777888888999988887665555555443 2224444445555544321 12346
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011137 262 WRFFLEMKKRK-CEIDVVTYTTIVHGFGVVGEIKRARNVFD-GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339 (493)
Q Consensus 262 ~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 339 (493)
.+.++.+.+.+ ..-+..-...-...+...|++++|.+++. ...+.-...+...-+.-+..+...+++.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 66777776654 22122222233445667888999999994 33333222333444455666667777777777776666
Q ss_pred hCC
Q 011137 340 GKG 342 (493)
Q Consensus 340 ~~~ 342 (493)
.+|
T Consensus 254 ~k~ 256 (932)
T KOG2053|consen 254 EKG 256 (932)
T ss_pred HhC
Confidence 664
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.20 E-value=0.00014 Score=57.91 Aligned_cols=125 Identities=13% Similarity=0.196 Sum_probs=67.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh--hhHHHHH
Q 011137 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS---VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS--TTYNVVI 354 (493)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li 354 (493)
|..++..+ ..++...+...++.+.+.... + ....-.+...+...|++++|...|+........+.. .....+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33333333 256666666666666654221 2 122333445566667777777777666665422221 2233345
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408 (493)
Q Consensus 355 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 408 (493)
..+...|++++|+..++..... ......+....+.|.+.|+.++|...|++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 5566667777777766554332 223445556666667777777777666653
No 143
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.13 E-value=4.6e-06 Score=47.86 Aligned_cols=33 Identities=42% Similarity=0.935 Sum_probs=23.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 011137 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241 (493)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~ 241 (493)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777777665
No 144
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.06 E-value=8.5e-06 Score=46.35 Aligned_cols=33 Identities=24% Similarity=0.516 Sum_probs=21.0
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 011137 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240 (493)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 240 (493)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 456666666666666666666666666666654
No 145
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.02 E-value=1.1e-05 Score=46.27 Aligned_cols=32 Identities=44% Similarity=0.837 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011137 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346 (493)
Q Consensus 315 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 346 (493)
|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 44444444444444444444444444444443
No 146
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.99 E-value=0.00014 Score=67.49 Aligned_cols=124 Identities=11% Similarity=0.161 Sum_probs=100.3
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 011137 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG--GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349 (493)
Q Consensus 272 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 349 (493)
+.+.+......+++.+....+++.+..++-+.... ....-..|..++++.|.+.|..+.++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 45557778888888888888899999998888765 2222234556899999999999999999998888999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc
Q 011137 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395 (493)
Q Consensus 350 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 395 (493)
++.+|..+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999988886666777776666666554
No 147
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.98 E-value=0.006 Score=53.16 Aligned_cols=179 Identities=10% Similarity=0.059 Sum_probs=89.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 011137 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLT--TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289 (493)
Q Consensus 212 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 289 (493)
.....+...|++++|.+.|+++.......... ..-.++.++.+.+++++|...+++..+..+.....-+...+.+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 33444455666666666666666543322111 1133455566666666666666666665332222222222222221
Q ss_pred --c---------------CC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 011137 290 --V---------------GE---IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349 (493)
Q Consensus 290 --~---------------g~---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 349 (493)
. .| ..+|++.|+++++. |=...-..+|...+..+... -...
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~----la~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR----LAKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH----HHHH
Confidence 0 11 22344444444443 22222233444433333322 0111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 011137 350 YNVVIRGLCHTGEMERALEFVGRMKDD--ECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409 (493)
Q Consensus 350 ~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 409 (493)
--.+...|.+.|.+..|..-++.+++. +.+........++.+|...|..++|.++...+.
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 113455567777777777777777765 334445566677777777777777777665543
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.96 E-value=0.00016 Score=52.56 Aligned_cols=87 Identities=15% Similarity=0.185 Sum_probs=34.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhH
Q 011137 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNK 225 (493)
Q Consensus 146 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 225 (493)
..+...|++++|...++.+.+.. +.+...+..+..++...|++++|.+.++......+.+..++..+...+...|++++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEE 86 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHH
Confidence 33344444444444444443321 11223333334444444444444444444333333333334444444444444444
Q ss_pred HHHHHHHH
Q 011137 226 ALEVLKEM 233 (493)
Q Consensus 226 A~~~~~~m 233 (493)
|...+...
T Consensus 87 a~~~~~~~ 94 (100)
T cd00189 87 ALEAYEKA 94 (100)
T ss_pred HHHHHHHH
Confidence 44444433
No 149
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.94 E-value=0.014 Score=52.43 Aligned_cols=320 Identities=14% Similarity=0.138 Sum_probs=156.5
Q ss_pred HHHHHHhhChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH--HH
Q 011137 74 QIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAAR--LRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER--YV 149 (493)
Q Consensus 74 ~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 149 (493)
.++..++..|..+-++|..-++..+ |..+-..+.. .||-..|.++-.+-.+. +..|...+..++.+ -.
T Consensus 60 wlv~~iw~sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal 131 (531)
T COG3898 60 WLVRSIWESPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAAL 131 (531)
T ss_pred HHHHHHHhCcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHH
Confidence 4455566777777777776665543 4555444443 45666666555543322 23455555555543 33
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHH
Q 011137 150 SAGKADRAVKIFLSMHEHGCRQSLNS--FNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKAL 227 (493)
Q Consensus 150 ~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 227 (493)
-.|+++.|.+-|+.|... |.... ...|.-.--+.|+.+.|.++-+.....-+.-...+...+...|..|+++.|+
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHH
Confidence 457777777777777652 22111 1222222344566777766666655554555566667777777777777777
Q ss_pred HHHHHHHhCC-CCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 011137 228 EVLKEMVDRG-LNPNLTTY--NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304 (493)
Q Consensus 228 ~~~~~m~~~g-~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 304 (493)
++++.-.... +.++..-- ..|+.+- .|.. -..+...|...-.+..
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAk--------------A~s~------------------ldadp~~Ar~~A~~a~ 256 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAK--------------AMSL------------------LDADPASARDDALEAN 256 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHH--------------HHHH------------------hcCChHHHHHHHHHHh
Confidence 7776655332 22222111 1111110 0000 0112333333333332
Q ss_pred HCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCC-C
Q 011137 305 NGGVLPSVATY-NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD-ECEP-N 381 (493)
Q Consensus 305 ~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~-~ 381 (493)
+ +.||...- -.-..++.+.|+..++-.+++.+.+...+|+. + .+..+.+.|+ .+..-+++..+. .++| +
T Consensus 257 K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gd--ta~dRlkRa~~L~slk~nn 328 (531)
T COG3898 257 K--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGD--TALDRLKRAKKLESLKPNN 328 (531)
T ss_pred h--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCC--cHHHHHHHHHHHHhcCccc
Confidence 2 23332211 22234556666666666666666666444432 1 1112223333 333333333222 1222 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcc-CCcccHHHHHHHHHHHHHC
Q 011137 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR-KKSDDLLVAGKLLIEMVDR 449 (493)
Q Consensus 382 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~-~~~~~~~~A~~~~~~m~~~ 449 (493)
.+....+..+-...|++..|..--+.... ..|....|..|.+.-... |+-++ +...+-+.++.
T Consensus 329 aes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~---vR~wlAqav~A 392 (531)
T COG3898 329 AESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGK---VRQWLAQAVKA 392 (531)
T ss_pred hHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHH---HHHHHHHHhcC
Confidence 44455555666666666666655555544 345556665555543332 55555 55666665543
No 150
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.93 E-value=1.7e-05 Score=45.02 Aligned_cols=28 Identities=32% Similarity=0.629 Sum_probs=10.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011137 315 YNAMIQVLCKKDSVENAILVFEEMVGKG 342 (493)
Q Consensus 315 ~~~li~~~~~~~~~~~a~~~~~~~~~~~ 342 (493)
|+.++.+|++.|+++.|..+|++|.+.|
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~g 31 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQG 31 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3333333333333333333333333333
No 151
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.93 E-value=0.0002 Score=66.54 Aligned_cols=126 Identities=13% Similarity=0.074 Sum_probs=96.7
Q ss_pred hcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 011137 200 RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR--GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277 (493)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 277 (493)
....+.+......+++.+....+++.+..++.+.... ....-..|..++++.|.+.|..++++.+++.=...|+-||.
T Consensus 59 ~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~ 138 (429)
T PF10037_consen 59 ERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN 138 (429)
T ss_pred hcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh
Confidence 3445556677777888888888888888888888754 22222345568888899999889999888888888888899
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 011137 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325 (493)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 325 (493)
.+++.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999988888887776666667776666666554
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.92 E-value=0.00018 Score=52.27 Aligned_cols=93 Identities=15% Similarity=0.264 Sum_probs=46.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 011137 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290 (493)
Q Consensus 211 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 290 (493)
..+...+...|++++|...++++.+.... +...+..+..++...|++++|.+.++........ +..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHH
Confidence 34444445555555555555555443221 2234444555555555555555555555544222 334455555555555
Q ss_pred CCHHHHHHHHHHHHH
Q 011137 291 GEIKRARNVFDGMVN 305 (493)
Q Consensus 291 g~~~~A~~~~~~~~~ 305 (493)
|+.+.|...+....+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 555555555555443
No 153
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.91 E-value=0.016 Score=52.08 Aligned_cols=96 Identities=15% Similarity=0.106 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHH--HhcCChHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 011137 102 SPSSFDHAIDLA--ARLRDYRTVWTLVHRMKSLSLGPTQK--TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177 (493)
Q Consensus 102 ~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 177 (493)
|..-.-.++.+- .-.|+++.|.+-|+.|... |... -+..|.-...+.|+.+.|.+.-+..-... +.-...+.
T Consensus 117 DqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~ 192 (531)
T COG3898 117 DQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAAR 192 (531)
T ss_pred cchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHH
Confidence 444444444433 3469999999999999863 2222 23334444557799999998888776543 33457888
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhc
Q 011137 178 TILDLLCKEKKVEKAYNLFKVFRG 201 (493)
Q Consensus 178 ~ll~~~~~~g~~~~A~~~~~~~~~ 201 (493)
.++...|..|+++.|+++++.-+.
T Consensus 193 AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 193 ATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Confidence 999999999999999999986554
No 154
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.016 Score=52.45 Aligned_cols=158 Identities=12% Similarity=0.023 Sum_probs=98.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHH-------------H
Q 011137 250 KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY-------------N 316 (493)
Q Consensus 250 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------------~ 316 (493)
.++...|+.++|.++--.+.+.... +......-..++.-.++.+.|...|++.+..+ |+...- .
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHH
Confidence 4455678888888877777665322 22222222233445677788888888777643 332211 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 011137 317 AMIQVLCKKDSVENAILVFEEMVGK---GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393 (493)
Q Consensus 317 ~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 393 (493)
.-..-..+.|.+..|.+.|.+.+.. +..++...|.....+..+.|+.++|+.--++..+.. ..-...|..-..++.
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l 332 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHL 332 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHH
Confidence 1122335678888888888887765 345566677777777778888888888887777542 111223333344556
Q ss_pred hcCCHHHHHHHHHHHhcC
Q 011137 394 DAGEIERGLELFEKMGSG 411 (493)
Q Consensus 394 ~~g~~~~a~~~~~~~~~~ 411 (493)
..+++++|.+-|++..+.
T Consensus 333 ~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 677888888888877664
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.90 E-value=0.00041 Score=53.14 Aligned_cols=95 Identities=15% Similarity=0.077 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCC---CcchHHHHHHH
Q 011137 142 AIIAERYVSAGKADRAVKIFLSMHEHGC--RQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA---DVISYNVIANG 216 (493)
Q Consensus 142 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~ 216 (493)
...+..+.+.|++++|.+.|+.+..... +.....+..+..++.+.|+++.|...|+.+....+. ...++..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3344444444555555555544443210 001223334444455555555555555544432211 12334444445
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 011137 217 WCLVKRTNKALEVLKEMVDR 236 (493)
Q Consensus 217 ~~~~~~~~~A~~~~~~m~~~ 236 (493)
+.+.|+.++|.+.++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 55555555555555555444
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.90 E-value=0.00049 Score=52.68 Aligned_cols=96 Identities=10% Similarity=0.105 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHH
Q 011137 211 NVIANGWCLVKRTNKALEVLKEMVDRGLN--PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE--IDVVTYTTIVHG 286 (493)
Q Consensus 211 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~ 286 (493)
..++..+.+.|++++|.+.|+++.+.... .....+..+..++.+.|++++|.+.++.+...... ....++..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 33444444445555555555544433211 01223344445555555555555555554443211 112334444444
Q ss_pred HhccCCHHHHHHHHHHHHHC
Q 011137 287 FGVVGEIKRARNVFDGMVNG 306 (493)
Q Consensus 287 ~~~~g~~~~A~~~~~~~~~~ 306 (493)
+.+.|+.++|...++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 55555555555555555443
No 157
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.89 E-value=0.00036 Score=54.67 Aligned_cols=87 Identities=10% Similarity=-0.003 Sum_probs=39.3
Q ss_pred HHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011137 182 LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261 (493)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 261 (493)
.+...|++++|..+|+.+..-.+.+..-|..|..++...|++++|+..|.......+. |...+-.+..++...|+.+.|
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCHHHH
Confidence 3344444444444444443333334444444444444444444444444444444332 344444444444444444444
Q ss_pred HHHHHHHH
Q 011137 262 WRFFLEMK 269 (493)
Q Consensus 262 ~~~~~~~~ 269 (493)
.+-|+..+
T Consensus 123 ~~aF~~Ai 130 (157)
T PRK15363 123 IKALKAVV 130 (157)
T ss_pred HHHHHHHH
Confidence 44444433
No 158
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.86 E-value=0.02 Score=51.87 Aligned_cols=110 Identities=11% Similarity=0.168 Sum_probs=76.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 011137 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358 (493)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 358 (493)
+.+..+.-+...|+...|.++-.+.. + |+...|...+.+++..++|++-..+... + -++..|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHHHHHH
Confidence 34445566667788777777765542 2 6788888888888888888877765432 1 14567888888888
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408 (493)
Q Consensus 359 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 408 (493)
+.|...+|..+..++. +..-+..|.++|++.+|.+.--+.
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 8888888888877621 134577788888888887665443
No 159
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.86 E-value=0.0056 Score=53.32 Aligned_cols=57 Identities=7% Similarity=0.038 Sum_probs=35.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 011137 317 AMIQVLCKKDSVENAILVFEEMVGK--GYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373 (493)
Q Consensus 317 ~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 373 (493)
.+..-|.+.|.+..|..-++.+.+. +..........++.+|...|..++|..+...+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3445566777777777777777665 22223445556667777777777776665544
No 160
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.82 E-value=0.00076 Score=52.90 Aligned_cols=99 Identities=12% Similarity=0.011 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 011137 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG 216 (493)
Q Consensus 137 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 216 (493)
+......+...+...|++++|..+|+.+...+ +.+...|-.|..++-..|++++|+..|.....-.+.|...+-.+..+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 34455556666778888888888888888765 44566677788888888888888888888776667788888888888
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 011137 217 WCLVKRTNKALEVLKEMVDR 236 (493)
Q Consensus 217 ~~~~~~~~~A~~~~~~m~~~ 236 (493)
+...|+.+.|.+.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888877654
No 161
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.80 E-value=3.4e-05 Score=42.69 Aligned_cols=29 Identities=41% Similarity=0.836 Sum_probs=17.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 011137 209 SYNVIANGWCLVKRTNKALEVLKEMVDRG 237 (493)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g 237 (493)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45666666666666666666666665554
No 162
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.79 E-value=0.00064 Score=60.78 Aligned_cols=130 Identities=12% Similarity=0.091 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHH
Q 011137 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL-LCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWC 218 (493)
Q Consensus 140 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 218 (493)
+|..+++..-+.+..+.|..+|.+..+.+ ..+..+|...... +.-.++.+.|..+|+...+.++.+...|...+..+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 45555555555555666666666655332 1222333333332 222344444666666555555555555555556556
Q ss_pred hcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011137 219 LVKRTNKALEVLKEMVDRGLNPN---LTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271 (493)
Q Consensus 219 ~~~~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 271 (493)
+.++.+.|..+|++.... +.++ ...|...+..=.+.|+++.+.++.+++.+.
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666655543 2111 135555555555566666666665555543
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.78 E-value=0.002 Score=57.89 Aligned_cols=214 Identities=16% Similarity=0.162 Sum_probs=105.1
Q ss_pred CHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 011137 188 KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR----GLNP-NLTTYNIVLKGYFRAGQIEEAW 262 (493)
Q Consensus 188 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~ 262 (493)
++++|..+|++ ....|...|++++|.+.|.+..+. +-.. -...|.....+|. .+++++|.
T Consensus 30 ~~e~Aa~~y~~--------------Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEK--------------AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAI 94 (282)
T ss_dssp HHHHHHHHHHH--------------HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHH
T ss_pred CHHHHHHHHHH--------------HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHH
Confidence 56666655543 344556667777777777665321 1100 0122333333332 22555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhC
Q 011137 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK-DSVENAILVFEEMVGK 341 (493)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~ 341 (493)
+.+++. +..|...|++..|-+++.++ ...|... |++++|.+.|++..+.
T Consensus 95 ~~~~~A---------------~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~ 144 (282)
T PF14938_consen 95 ECYEKA---------------IEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAEL 144 (282)
T ss_dssp HHHHHH---------------HHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHH
T ss_pred HHHHHH---------------HHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 555443 34455555555554444433 3344444 5666666666555432
Q ss_pred ----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 342 ----GYM-PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE-----PNVQ-TYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 342 ----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
|.. .-..++..+...+.+.|++++|.++|+++...... .+.. .+-..+-++...|+...|.+.+++...
T Consensus 145 y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 145 YEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 200 01234455666677777888888888777654211 1221 222333355556788888888887765
Q ss_pred C--CCCCC--HHHHHHHHHHHhccCCcccHHHHHHHHHHHH
Q 011137 411 G--VCLPN--LDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447 (493)
Q Consensus 411 ~--~~~p~--~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~ 447 (493)
. ++..+ ......|+.++ ..|+.+.+..++.-|+.+.
T Consensus 225 ~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 225 QDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp TSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHTTSS
T ss_pred hCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHcccC
Confidence 4 22222 33445555554 4566666555655555544
No 164
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.77 E-value=0.00065 Score=49.33 Aligned_cols=81 Identities=14% Similarity=0.225 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhCCCCCCHHH
Q 011137 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSL-GPTQKTFAIIAERYVSAG--------KADRAVKIFLSMHEHGCRQSLNS 175 (493)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~ 175 (493)
+-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344556667777999999999999999999 899999999999877654 23466788888888888999999
Q ss_pred HHHHHHHHHc
Q 011137 176 FNTILDLLCK 185 (493)
Q Consensus 176 ~~~ll~~~~~ 185 (493)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9988887654
No 165
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.75 E-value=0.00083 Score=60.05 Aligned_cols=131 Identities=15% Similarity=0.093 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011137 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER-YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182 (493)
Q Consensus 104 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 182 (493)
.+|-.+++..-+.+..+.|..+|.+..+.+. .+..+|...... |...++.+.|..+|+...+. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4688889999999999999999999986542 344555555544 33367777899999999875 56788899999999
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011137 183 LCKEKKVEKAYNLFKVFRGKFKADV---ISYNVIANGWCLVKRTNKALEVLKEMVDR 236 (493)
Q Consensus 183 ~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 236 (493)
+.+.|+.+.|..+|++.....+++. ..|...+..=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999887755544 48999999999999999999999988864
No 166
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.75 E-value=0.0005 Score=49.91 Aligned_cols=25 Identities=28% Similarity=0.693 Sum_probs=10.0
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHH
Q 011137 332 ILVFEEMVGKGYMPNSTTYNVVIRG 356 (493)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~li~~ 356 (493)
+.+|+.|...+++|+..+|+.++..
T Consensus 89 LtvYqDiL~~~lKP~~etYnivl~~ 113 (120)
T PF08579_consen 89 LTVYQDILSNKLKPNDETYNIVLGS 113 (120)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHH
Confidence 3333444443444444444444433
No 167
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.75 E-value=0.0006 Score=56.00 Aligned_cols=80 Identities=11% Similarity=-0.079 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 011137 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ--SLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG 216 (493)
Q Consensus 139 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 216 (493)
..+..+...+...|++++|+..|+........+ ...++..+..++...|++++|+..++......+....++..+...
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 344555555555666666666666655432111 123455555566666666666666655544433334444444444
Q ss_pred HH
Q 011137 217 WC 218 (493)
Q Consensus 217 ~~ 218 (493)
+.
T Consensus 116 ~~ 117 (168)
T CHL00033 116 CH 117 (168)
T ss_pred HH
Confidence 44
No 168
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.74 E-value=0.0011 Score=61.66 Aligned_cols=90 Identities=8% Similarity=-0.068 Sum_probs=53.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhH
Q 011137 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNK 225 (493)
Q Consensus 146 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 225 (493)
..+...|++++|++.|+++++.. +.+...|..+..+|.+.|++++|+..+++.....+.+...|..+..+|...|++++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 33445566666666666666543 33455555556666666666666666666555555555566666666666666666
Q ss_pred HHHHHHHHHhC
Q 011137 226 ALEVLKEMVDR 236 (493)
Q Consensus 226 A~~~~~~m~~~ 236 (493)
|+..|++..+.
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 66666666654
No 169
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.74 E-value=0.00079 Score=60.38 Aligned_cols=133 Identities=13% Similarity=0.064 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCC-CCCh
Q 011137 278 VTYTTIVHGFGVVGEIKRARNVFDGMV----NGGVL-PSVATYNAMIQVLCKKDSVENAILVFEEMVG----KGY-MPNS 347 (493)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~ 347 (493)
..|..|...|.-.|+++.|+...+.-. +-|.. .....+..+..++.-.|+++.|.+.|+.... .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 456666677777788888877665432 22221 1234667777788888888888888765432 221 1233
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 348 TTYNVVIRGLCHTGEMERALEFVGRMKDD-----ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 348 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
.....|...|.-..++++|+.++.+-... ..--....|-+|..+|...|..++|+.+.+.-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45556777777777888888877654321 1112455677888888888888888877665543
No 170
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.73 E-value=6.5e-05 Score=53.38 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=7.2
Q ss_pred HHHHHHccCCHHHHHHHH
Q 011137 179 ILDLLCKEKKVEKAYNLF 196 (493)
Q Consensus 179 ll~~~~~~g~~~~A~~~~ 196 (493)
+..++.+.|++++|..++
T Consensus 31 la~~~~~~~~y~~A~~~~ 48 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELL 48 (84)
T ss_dssp HHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH
Confidence 333444444444444443
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.69 E-value=0.0025 Score=52.46 Aligned_cols=86 Identities=15% Similarity=0.130 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011137 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPT--QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181 (493)
Q Consensus 104 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 181 (493)
..+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|+..+++..+.. +.+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3444455555555555555555555544322111 2344445555555555555555555554432 223333444444
Q ss_pred HHHccCCHH
Q 011137 182 LLCKEKKVE 190 (493)
Q Consensus 182 ~~~~~g~~~ 190 (493)
++...|+..
T Consensus 115 ~~~~~g~~~ 123 (172)
T PRK02603 115 IYHKRGEKA 123 (172)
T ss_pred HHHHcCChH
Confidence 444444433
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.68 E-value=0.0031 Score=51.99 Aligned_cols=117 Identities=12% Similarity=0.021 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHH
Q 011137 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ--SLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIA 214 (493)
Q Consensus 137 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 214 (493)
....+..+...+...|++++|...|++..+....+ ....+..+..++.+.|++++|...+++.....+.+...+..+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 34567778888899999999999999988653222 2467888889999999999999999988876666777888888
Q ss_pred HHHHhcCC--------------hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011137 215 NGWCLVKR--------------TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257 (493)
Q Consensus 215 ~~~~~~~~--------------~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 257 (493)
..+...|+ +++|.+++++....+ | ..|..++..+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~--p--~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA--P--NNYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC--c--hhHHHHHHHHHhcCc
Confidence 88888877 578999999988753 2 336666666655554
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.68 E-value=0.012 Score=52.86 Aligned_cols=80 Identities=19% Similarity=0.226 Sum_probs=38.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc-CChhHHHHHHHHHHh----CCCCC-CHHHHHHHHHH
Q 011137 178 TILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV-KRTNKALEVLKEMVD----RGLNP-NLTTYNIVLKG 251 (493)
Q Consensus 178 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~m~~----~g~~p-~~~~~~~l~~~ 251 (493)
..+..|...|++..|-+.+.. +...|... |++++|++.|++..+ .|..- -...+..+...
T Consensus 99 ~A~~~y~~~G~~~~aA~~~~~--------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 99 KAIEIYREAGRFSQAAKCLKE--------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHHCT-HHHHHHHHHH--------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHH--------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 334455566666655544433 33344444 666666666666542 12100 11234455555
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 011137 252 YFRAGQIEEAWRFFLEMKKR 271 (493)
Q Consensus 252 ~~~~g~~~~a~~~~~~~~~~ 271 (493)
+.+.|++++|.++|+++...
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHHH
Confidence 66666666666666665543
No 174
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.67 E-value=6.4e-05 Score=41.55 Aligned_cols=29 Identities=41% Similarity=0.756 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 011137 384 TYNILIRYFCDAGEIERGLELFEKMGSGV 412 (493)
Q Consensus 384 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 412 (493)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34555555555555555555555554443
No 175
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.67 E-value=9.4e-05 Score=52.56 Aligned_cols=47 Identities=19% Similarity=0.351 Sum_probs=18.5
Q ss_pred CChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011137 221 KRTNKALEVLKEMVDRGLN-PNLTTYNIVLKGYFRAGQIEEAWRFFLE 267 (493)
Q Consensus 221 ~~~~~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 267 (493)
|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..+++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444444444444433221 1222233344444444444444444444
No 176
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.67 E-value=0.002 Score=53.10 Aligned_cols=104 Identities=20% Similarity=0.219 Sum_probs=57.5
Q ss_pred CChhhHHHHHHHHHh-----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHH
Q 011137 345 PNSTTYNVVIRGLCH-----TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419 (493)
Q Consensus 345 ~~~~~~~~li~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 419 (493)
-+..+|..+++.|.+ .|.++-....++.|.+-|+.-|..+|+.|++.+=+ |.+- -..+|+.+--
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~--------- 113 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM--------- 113 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc---------
Confidence 366677777776653 35566666666677777777777777777776654 2210 0000100000
Q ss_pred HHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 011137 420 YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470 (493)
Q Consensus 420 ~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 470 (493)
....+..-|++++++|.+.|+.||.+++..++..|.+.+.
T Consensus 114 -----------hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 -----------HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -----------cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 0111122266777777777777777777777766655443
No 177
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.64 E-value=0.0017 Score=60.28 Aligned_cols=93 Identities=8% Similarity=-0.072 Sum_probs=75.5
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 011137 180 LDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259 (493)
Q Consensus 180 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 259 (493)
...+...|++++|+..|++.....+.+...|..+..+|.+.|++++|+..++++++.... +...|..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHH
Confidence 345667788999999888888777777888888888888899999999998888876543 5667888888888889999
Q ss_pred HHHHHHHHHHHCCC
Q 011137 260 EAWRFFLEMKKRKC 273 (493)
Q Consensus 260 ~a~~~~~~~~~~~~ 273 (493)
+|+..|++..+.+.
T Consensus 88 eA~~~~~~al~l~P 101 (356)
T PLN03088 88 TAKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999888887643
No 178
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.62 E-value=0.0009 Score=57.70 Aligned_cols=97 Identities=14% Similarity=0.147 Sum_probs=66.1
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 011137 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365 (493)
Q Consensus 286 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 365 (493)
-+.+.+++++|+..|.+.++... -|..-|..-..+|++.|.++.|++-.+..+..+.. ...+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 35667777788888877777532 25666666777777777777777777766665322 34567777777777777777
Q ss_pred HHHHHHHhhhCCCCCCHHHHH
Q 011137 366 ALEFVGRMKDDECEPNVQTYN 386 (493)
Q Consensus 366 a~~~~~~~~~~~~~~~~~~~~ 386 (493)
|++.|++.++. .|+-.+|-
T Consensus 168 A~~aykKaLel--dP~Ne~~K 186 (304)
T KOG0553|consen 168 AIEAYKKALEL--DPDNESYK 186 (304)
T ss_pred HHHHHHhhhcc--CCCcHHHH
Confidence 77777777754 55555553
No 179
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.60 E-value=0.08 Score=51.38 Aligned_cols=122 Identities=11% Similarity=0.061 Sum_probs=74.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSL-SLGP--------TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCR 170 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 170 (493)
.|.+..|..+.......-.++.|...|-+.... |++. +...-.+=+. .--|++++|.++|-++.+.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhh--
Confidence 457889999998888777777777776655432 2210 1111111122 22588999999987776543
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHhhcC--CCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 011137 171 QSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK--FKADVISYNVIANGWCLVKRTNKALEVLKE 232 (493)
Q Consensus 171 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 232 (493)
..+..+.+.|++-...++++.-... ...-..+|+.+...+.....|++|.+.|..
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677777777666665542221 111224677777777777777777776654
No 180
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.59 E-value=0.0006 Score=61.11 Aligned_cols=132 Identities=12% Similarity=0.006 Sum_probs=78.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhh----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC----CC-CCCHH
Q 011137 349 TYNVVIRGLCHTGEMERALEFVGRMKD----DEC-EPNVQTYNILIRYFCDAGEIERGLELFEKMGSG----VC-LPNLD 418 (493)
Q Consensus 349 ~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~p~~~ 418 (493)
.|..|...|.-.|+++.|+...+.-.. -|- ......+..+..++.-.|+++.|.+.|+.-... |- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 344445555556778887776654322 121 112345677777888888888888877654321 21 12334
Q ss_pred HHHHHHHHHhccCCcccHHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 419 TYNILISSMFVRKKSDDLLVAGKLLIEMVD----R-GFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483 (493)
Q Consensus 419 ~~~~li~~~~~~~~~~~~~~A~~~~~~m~~----~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (493)
+..+|.+.|.-..+++. |+.++.+-+. . ...-....+.+|..+|...|..+.|..+.+...+
T Consensus 277 scYSLgNtytll~e~~k---AI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQK---AITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45566666666556666 6666654321 1 1223456677888888888888888877765544
No 181
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.58 E-value=0.0079 Score=45.52 Aligned_cols=94 Identities=13% Similarity=0.102 Sum_probs=55.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHH
Q 011137 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPN--LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE--IDVVTYTTIVHGF 287 (493)
Q Consensus 212 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~ 287 (493)
.+..++-..|+.++|+.+|++....|...+ ...+..+.+.+...|++++|..++++....... .+......+.-++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 344555667777777777777777665533 234555666677777777777777776654211 1222223334455
Q ss_pred hccCCHHHHHHHHHHHHH
Q 011137 288 GVVGEIKRARNVFDGMVN 305 (493)
Q Consensus 288 ~~~g~~~~A~~~~~~~~~ 305 (493)
...|+.++|++.+-....
T Consensus 86 ~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 666777777666655443
No 182
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.56 E-value=0.0047 Score=46.73 Aligned_cols=87 Identities=17% Similarity=0.179 Sum_probs=38.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCC---CcchHHHHHHHHHhcC
Q 011137 147 RYVSAGKADRAVKIFLSMHEHGCRQS--LNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA---DVISYNVIANGWCLVK 221 (493)
Q Consensus 147 ~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~ 221 (493)
++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+++.....++. +......+..++...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 34445555555555555555443222 122333444445555555555555544433322 1122222333444455
Q ss_pred ChhHHHHHHHHH
Q 011137 222 RTNKALEVLKEM 233 (493)
Q Consensus 222 ~~~~A~~~~~~m 233 (493)
+.++|++.+-..
T Consensus 90 r~~eAl~~~l~~ 101 (120)
T PF12688_consen 90 RPKEALEWLLEA 101 (120)
T ss_pred CHHHHHHHHHHH
Confidence 555555554443
No 183
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.54 E-value=0.014 Score=56.35 Aligned_cols=203 Identities=10% Similarity=0.111 Sum_probs=117.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCC--------CHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCC
Q 011137 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEH-GCRQ--------SLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKAD 206 (493)
Q Consensus 136 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~--------~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 206 (493)
|.+..|..+.......-.++.|...|-+.... |++. +...-.+=+.+ -.|++++|+++|-.+..+
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drr---- 763 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRR---- 763 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchh----
Confidence 67788888877776666777777666554432 1100 00011111222 247777777777655443
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011137 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP----NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282 (493)
Q Consensus 207 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 282 (493)
...+..+.+.|++-...++++. .|-.. -...++.+...++....+++|.+.|..-... ..
T Consensus 764 ----DLAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~ 827 (1189)
T KOG2041|consen 764 ----DLAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------EN 827 (1189)
T ss_pred ----hhhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------Hh
Confidence 2445566667777555554432 11111 1356777777777777777777777653221 23
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 011137 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362 (493)
Q Consensus 283 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 362 (493)
.+.++.+..++++-+.+-..+ +-+....-.+.+++.+.|.-++|.+.+-+-.. | ...+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHH
Confidence 456666666665555444443 23556667778888888888888776643221 1 234556777788
Q ss_pred HHHHHHHHHHhh
Q 011137 363 MERALEFVGRMK 374 (493)
Q Consensus 363 ~~~a~~~~~~~~ 374 (493)
|.+|.++-++..
T Consensus 894 W~~avelaq~~~ 905 (1189)
T KOG2041|consen 894 WGEAVELAQRFQ 905 (1189)
T ss_pred HHHHHHHHHhcc
Confidence 888888776654
No 184
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.51 E-value=0.075 Score=48.87 Aligned_cols=127 Identities=14% Similarity=0.240 Sum_probs=78.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHH-HHHHH
Q 011137 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDE-CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY-NILIS 425 (493)
Q Consensus 348 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~li~ 425 (493)
..|...+.+..+...++.|..+|-+..+.+ +.+++.++++++..++ .|+..-|..+|+--... -||...| +-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 455566666667777777888888877776 5567777777777665 46667777777654443 2343333 33344
Q ss_pred HHhccCCcccHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011137 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPR--KFTFNRVLNGLLLIGNQGLAKEILRLQ 481 (493)
Q Consensus 426 ~~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~ 481 (493)
-+...++-+. |..+|+..+.+ +.-+ ...|..+|..-..-|+...+..+-+.+
T Consensus 475 fLi~inde~n---araLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 475 FLIRINDEEN---ARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred HHHHhCcHHH---HHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 4455566666 77777755543 2333 556777777767777776665554443
No 185
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.50 E-value=0.0046 Score=50.74 Aligned_cols=91 Identities=18% Similarity=0.079 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 011137 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMP--NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391 (493)
Q Consensus 314 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 391 (493)
.|..+...+...|++++|...|+........+ ...++..+...+...|++++|+..++...... +.....+..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 44445555555666666666666655442111 12345555566666666666666666665542 2233444444444
Q ss_pred HH-------hcCCHHHHHHHH
Q 011137 392 FC-------DAGEIERGLELF 405 (493)
Q Consensus 392 ~~-------~~g~~~~a~~~~ 405 (493)
+. ..|++++|...+
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHH
Confidence 44 555555444333
No 186
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.49 E-value=0.011 Score=57.65 Aligned_cols=62 Identities=10% Similarity=0.030 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 011137 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376 (493)
Q Consensus 313 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 376 (493)
..|.++.......|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++....
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 444444444444555555555555555543 34455555555555555555555555555544
No 187
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.49 E-value=0.014 Score=49.54 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=24.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhC--CCCCCHHHHHHHHHHHHhcCCHHHH
Q 011137 353 VIRGLCHTGEMERALEFVGRMKDD--ECEPNVQTYNILIRYFCDAGEIERG 401 (493)
Q Consensus 353 li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a 401 (493)
+...|.+.|.+..|..-++.+++. +.+........++.+|.+.|..+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 444566666666666666666654 1111123344555566666655533
No 188
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.45 E-value=0.016 Score=56.45 Aligned_cols=63 Identities=14% Similarity=0.240 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 011137 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306 (493)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 306 (493)
...|..+.-.+...|++++|...+++....+ |+...|..+...+...|+.++|.+.|++....
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445544444445566666666666655553 34555555666666666666666666655543
No 189
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.45 E-value=0.0035 Score=51.74 Aligned_cols=84 Identities=17% Similarity=0.295 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc----------------CCHHHHHHH
Q 011137 311 SVATYNAMIQVLCK-----KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT----------------GEMERALEF 369 (493)
Q Consensus 311 ~~~~~~~li~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------~~~~~a~~~ 369 (493)
+..+|..+++.|.+ .|.++-....+..|.+-|+.-|..+|+.|++.+=+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 45555555555543 345555555666666666666666666666655431 123344555
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHh
Q 011137 370 VGRMKDDECEPNVQTYNILIRYFCD 394 (493)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~l~~~~~~ 394 (493)
+++|...|+-||.+++..+++.+.+
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 5555555555555555555555533
No 190
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.013 Score=49.62 Aligned_cols=130 Identities=12% Similarity=0.067 Sum_probs=60.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-----HH
Q 011137 107 DHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI-----LD 181 (493)
Q Consensus 107 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-----l~ 181 (493)
+.+++.+.-.|.+.-...+++++.+...+.++.....+.+.-.+.|+.+.|...|++..+..-..+....+.+ ..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 3444444445555555555555555544445555555555555555555555555544432111222122111 12
Q ss_pred HHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011137 182 LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236 (493)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 236 (493)
.|.-.+++..|...+.++....+.+...-|.-.-+..-.|+..+|++.++.|...
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2333444555555555444444444444444444444445555555555555543
No 191
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.42 E-value=0.0027 Score=54.86 Aligned_cols=86 Identities=14% Similarity=0.137 Sum_probs=45.6
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 011137 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297 (493)
Q Consensus 218 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 297 (493)
.+.+++.+|+..|.+.+..... |.+-|..-..+|.+.|.++.|++-.+..+..+.. -..+|..|..+|...|++++|+
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHHH
Confidence 3445555555555555554333 4455555555555555555555555555544221 3445555555555555555555
Q ss_pred HHHHHHHH
Q 011137 298 NVFDGMVN 305 (493)
Q Consensus 298 ~~~~~~~~ 305 (493)
+.|++.++
T Consensus 170 ~aykKaLe 177 (304)
T KOG0553|consen 170 EAYKKALE 177 (304)
T ss_pred HHHHhhhc
Confidence 55555554
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.39 E-value=0.048 Score=43.80 Aligned_cols=123 Identities=11% Similarity=0.121 Sum_probs=72.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC---CCCCHHHH
Q 011137 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE---CEPNVQTY 385 (493)
Q Consensus 309 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~ 385 (493)
.|+...-..|..++.+.|+..+|...|.+...--+.-|....-.+.++....+++..|...++.+.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 455555556666667777777777777766655445566666666666666777777777776665542 1233 33
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCccc
Q 011137 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435 (493)
Q Consensus 386 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 435 (493)
-.+...+...|..+.|+.-|+..... .|+...-......+.+.|+.++
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~e 211 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLRE 211 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhH
Confidence 34566666667777777777666663 3444333333333445554444
No 193
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.012 Score=51.32 Aligned_cols=128 Identities=13% Similarity=0.087 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHH
Q 011137 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG---EIERGLEL 404 (493)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~ 404 (493)
.+....-++.-...+. -|...|..|..+|...|+.+.|..-|.+..+.. +++...+..+..++..+. ...++.++
T Consensus 138 ~~~l~a~Le~~L~~nP-~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQNP-GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 3444444444444432 266777777777777777777777777777663 445666666666654432 34567777
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011137 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463 (493)
Q Consensus 405 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 463 (493)
|+++.... +-|+.+...|...+...|++.+ |...|+.|.+. -|....+..+|.
T Consensus 216 l~~al~~D-~~~iral~lLA~~afe~g~~~~---A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 216 LRQALALD-PANIRALSLLAFAAFEQGDYAE---AAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHHcccHHH---HHHHHHHHHhc--CCCCCchHHHHH
Confidence 77777642 2255666666667777777777 77777777765 233333444443
No 194
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.36 E-value=0.027 Score=47.76 Aligned_cols=67 Identities=13% Similarity=0.141 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCC
Q 011137 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHG--CRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA 205 (493)
Q Consensus 139 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 205 (493)
..+-.....+...|++++|++.|+.+...- -+-.....-.++.++.+.|+++.|...++++....|.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 334444455556666777776666666431 0112233445556666666666666666666554443
No 195
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.36 E-value=0.022 Score=54.50 Aligned_cols=103 Identities=18% Similarity=0.182 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHH
Q 011137 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGW 217 (493)
Q Consensus 138 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (493)
+..+.+-+..|...|.+++|.++-. .| .....|..|.......=+++-|.+.|.+.+..
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iac----lg--Vv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl--------------- 614 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIAC----LG--VTDTDWRELAMEALEALDFETARKAYIRVRDL--------------- 614 (1081)
T ss_pred cccccccchhhhhccchhhhhcccc----cc--eecchHHHHHHHHHhhhhhHHHHHHHHHHhcc---------------
Confidence 3344445556777788877765421 11 22234555555444555566666655554432
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268 (493)
Q Consensus 218 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 268 (493)
.+-+...-++++.++|-.|+... +...++-.|++.+|-++|.+-
T Consensus 615 ----~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 615 ----RYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred ----HHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc
Confidence 12233344677777887777653 345566678888888887653
No 196
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.31 E-value=0.0008 Score=45.43 Aligned_cols=48 Identities=17% Similarity=0.289 Sum_probs=18.2
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011137 117 RDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165 (493)
Q Consensus 117 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 165 (493)
|++++|.++|+.+....+ .+...+..+..+|.+.|++++|.++++.+.
T Consensus 5 ~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp THHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred cCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444444333321 233333334444444444444444444333
No 197
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.13 Score=46.79 Aligned_cols=157 Identities=10% Similarity=0.021 Sum_probs=102.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HH----------HHHHH
Q 011137 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID-VV----------TYTTI 283 (493)
Q Consensus 215 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~----------~~~~l 283 (493)
.++...|+.++|.+.-....+.... +......-..++.-.++.+.+..-|++.+..+.... .. .+..-
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhh
Confidence 4556678888888777776655322 222222223344456778888888888777643211 00 11111
Q ss_pred HHHHhccCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH---HHHHH
Q 011137 284 VHGFGVVGEIKRARNVFDGMVNG---GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV---VIRGL 357 (493)
Q Consensus 284 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---li~~~ 357 (493)
.+-..+.|++..|.+.|.+.+.. +..++...|.....+..+.|+.++|+.--++..+- |..-... -..++
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~ 331 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCH 331 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHH
Confidence 23357889999999999998864 34556667777778888999999999888877765 4332222 23355
Q ss_pred HhcCCHHHHHHHHHHhhhC
Q 011137 358 CHTGEMERALEFVGRMKDD 376 (493)
Q Consensus 358 ~~~~~~~~a~~~~~~~~~~ 376 (493)
.-.++|++|.+-++...+.
T Consensus 332 l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5678999999999988776
No 198
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.019 Score=49.99 Aligned_cols=102 Identities=8% Similarity=0.099 Sum_probs=53.0
Q ss_pred CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHH
Q 011137 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG---QIEEAWRFFLEMKKRKCEIDVVT 279 (493)
Q Consensus 203 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~ 279 (493)
.|-|...|..|...|...|+.+.|..-|.+..+...+ +...+..+..++.... ...++..+++++...+.. |+.+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~ira 229 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRA 229 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHH
Confidence 4445556666666666666666666666655544222 3334444444333221 234555555555555332 4555
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHC
Q 011137 280 YTTIVHGFGVVGEIKRARNVFDGMVNG 306 (493)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~~~~~~ 306 (493)
...|...+...|++.+|...|+.|.+.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 555555555556666666655555554
No 199
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.28 E-value=0.001 Score=44.44 Aligned_cols=52 Identities=12% Similarity=0.114 Sum_probs=21.2
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 011137 183 LCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234 (493)
Q Consensus 183 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 234 (493)
+.+.|++++|...|+.+....|.+...+..+..++...|++++|...|+++.
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444443333333444444444444444444444444443
No 200
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.28 E-value=0.0013 Score=44.40 Aligned_cols=52 Identities=17% Similarity=0.367 Sum_probs=32.3
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 011137 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411 (493)
Q Consensus 359 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 411 (493)
+.|++++|+++|+.+.... +-+...+..++.+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566666666666666553 335566666666666666666666666666653
No 201
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.26 E-value=0.071 Score=42.89 Aligned_cols=134 Identities=11% Similarity=0.080 Sum_probs=89.0
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHH
Q 011137 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM-PNSTTYNV 352 (493)
Q Consensus 274 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 352 (493)
.|+......|..+....|+..+|...|++....-...|......+.++....++...|...++.+.+.+.. -++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 45566666677777777777777777777766545556666666777777777888888888777766311 12234455
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 011137 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409 (493)
Q Consensus 353 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 409 (493)
+.+.+...|+++.|+.-|+..... .|+...-......+.+.|+.+++..-+..+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 667777778888888888877765 5555555555666677777776665554443
No 202
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.16 E-value=0.0016 Score=43.45 Aligned_cols=55 Identities=11% Similarity=0.147 Sum_probs=28.6
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 111 DLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE 166 (493)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 166 (493)
..+.+.|++++|...|+.+.+..+ -+...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555555555555432 2445555555555555555555555555544
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.13 E-value=0.014 Score=51.36 Aligned_cols=94 Identities=13% Similarity=0.065 Sum_probs=49.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCC---cchHHHH
Q 011137 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQS----LNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKAD---VISYNVI 213 (493)
Q Consensus 141 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l 213 (493)
|...+..+.+.|++++|+..|+.+.+.- |+ ...+-.+..+|...|++++|...|+.+...+|.+ ..++..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3333333344566666666666665432 22 2344455556666666666666666655443332 2333444
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 011137 214 ANGWCLVKRTNKALEVLKEMVDR 236 (493)
Q Consensus 214 ~~~~~~~~~~~~A~~~~~~m~~~ 236 (493)
...+...|+.++|.+.|+++.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 55555666666666666666554
No 204
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.12 E-value=0.002 Score=43.57 Aligned_cols=63 Identities=21% Similarity=0.296 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhc
Q 011137 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG-EIERGLELFEKMGS 410 (493)
Q Consensus 347 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~ 410 (493)
+..|..+...+...|++++|+..|.+.++.. +-+...|..+..+|.+.| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3444555555555555555555555555543 224445555555555555 45555555555443
No 205
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.11 E-value=0.0013 Score=44.46 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 011137 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG-QIEEAWRFFLEM 268 (493)
Q Consensus 210 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~ 268 (493)
|..+...+...|++++|+..|++..+.... +...|..+..++...| ++++|++.+++.
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 333344444444444444444444333221 2333334444444444 344444444433
No 206
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.08 E-value=0.23 Score=45.69 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011137 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484 (493)
Q Consensus 454 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 484 (493)
+-..+.+++.++.-.|+.+.|.+..+.+.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3444455555666666666666666666554
No 207
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.06 E-value=0.23 Score=45.13 Aligned_cols=81 Identities=14% Similarity=0.200 Sum_probs=38.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC
Q 011137 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396 (493)
Q Consensus 317 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 396 (493)
..|.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++-.++... +-++.-|..++.+|.+.|
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCC
Confidence 33444444555555544443331 24555555555555555555554443221 112234555555555555
Q ss_pred CHHHHHHHHHH
Q 011137 397 EIERGLELFEK 407 (493)
Q Consensus 397 ~~~~a~~~~~~ 407 (493)
+..+|..+..+
T Consensus 252 ~~~eA~~yI~k 262 (319)
T PF04840_consen 252 NKKEASKYIPK 262 (319)
T ss_pred CHHHHHHHHHh
Confidence 55555555544
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.17 Score=43.20 Aligned_cols=132 Identities=8% Similarity=0.036 Sum_probs=84.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH----
Q 011137 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI---- 354 (493)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li---- 354 (493)
+.+.++..+...|.+.-....+.++++...+.+......+.+.-.+.||.+.|...|++..+..-..|..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4456666777777777777777777776656667777777777777888888888887666543333333333332
Q ss_pred -HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 011137 355 -RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411 (493)
Q Consensus 355 -~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 411 (493)
..|.-.+++..|...+.+....+ +-+....|.-.-+..-.|+...|.+.++.|.+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 23445667777777777776653 334444444333444467788888888888774
No 209
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.01 E-value=0.029 Score=44.69 Aligned_cols=70 Identities=20% Similarity=0.336 Sum_probs=36.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-----CCCCCCHHH
Q 011137 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS-----GVCLPNLDT 419 (493)
Q Consensus 349 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~ 419 (493)
....++..+...|++++|..+.+.+.... +.+...|..+|.+|...|+..+|.++|+++.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34445555556666666666666666553 44555666666666666666666666665532 255555443
No 210
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.00 E-value=0.014 Score=51.26 Aligned_cols=88 Identities=11% Similarity=0.138 Sum_probs=42.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCCCHHHHHHHHHHHHhcCCH
Q 011137 323 CKKDSVENAILVFEEMVGKGYMPN--STTYNVVIRGLCHTGEMERALEFVGRMKDD--ECEPNVQTYNILIRYFCDAGEI 398 (493)
Q Consensus 323 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 398 (493)
.+.|++++|...|+.+.+...... ...+..+..+|...|++++|...|+.+.+. +-+.....+-.++..+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 444555555555555554411100 124444555555555555555555555543 1111233333444455555566
Q ss_pred HHHHHHHHHHhc
Q 011137 399 ERGLELFEKMGS 410 (493)
Q Consensus 399 ~~a~~~~~~~~~ 410 (493)
++|..+|+++.+
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 666655555554
No 211
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.91 E-value=0.093 Score=50.48 Aligned_cols=54 Identities=11% Similarity=0.053 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011137 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340 (493)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 340 (493)
.+...+...+.+...+..|-++|.+|-.. ..+++.....++|.+|..+-+...+
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 33444444444555555666666655331 2344555566666666666554433
No 212
>PRK15331 chaperone protein SicA; Provisional
Probab=96.71 E-value=0.19 Score=39.92 Aligned_cols=93 Identities=17% Similarity=0.144 Sum_probs=72.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCC
Q 011137 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKR 222 (493)
Q Consensus 143 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 222 (493)
....-+...|++++|..+|.-+...+ .-+...|..|..++-..+++++|+..|.........|...+.....++...|+
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 34445667899999999998888765 34566777888888888999999998876554444566777788888899999
Q ss_pred hhHHHHHHHHHHhC
Q 011137 223 TNKALEVLKEMVDR 236 (493)
Q Consensus 223 ~~~A~~~~~~m~~~ 236 (493)
.+.|...|+.....
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999988888763
No 213
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.63 E-value=0.58 Score=43.37 Aligned_cols=91 Identities=14% Similarity=0.175 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHH-HH
Q 011137 383 QTYNILIRYFCDAGEIERGLELFEKMGSGV-CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF-NR 460 (493)
Q Consensus 383 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~-~~ 460 (493)
.+|+.++....+..-++.|..+|-+..+.| +.+++.++++++.-++. |+..- |.++|+--..+ .||...| ..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~t---a~~ifelGl~~--f~d~~~y~~k 471 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRAT---AYNIFELGLLK--FPDSTLYKEK 471 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcch---HHHHHHHHHHh--CCCchHHHHH
Confidence 457778888888888999999999999988 55889999999987765 55566 99999987764 4554433 34
Q ss_pred HHHHHHHcCCHHHHHHHHH
Q 011137 461 VLNGLLLIGNQGLAKEILR 479 (493)
Q Consensus 461 l~~~~~~~g~~~~a~~~~~ 479 (493)
.+.-+...++-..|..+|+
T Consensus 472 yl~fLi~inde~naraLFe 490 (660)
T COG5107 472 YLLFLIRINDEENARALFE 490 (660)
T ss_pred HHHHHHHhCcHHHHHHHHH
Confidence 5556777888888888877
No 214
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.62 E-value=0.57 Score=43.18 Aligned_cols=33 Identities=18% Similarity=0.081 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 011137 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411 (493)
Q Consensus 379 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 411 (493)
..+...+..++.+..-.|+.++|.+..++|...
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 345666677778888888888888888888765
No 215
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.59 E-value=0.017 Score=46.12 Aligned_cols=68 Identities=19% Similarity=0.246 Sum_probs=35.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH-----hCCCCCCHHH
Q 011137 177 NTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV-----DRGLNPNLTT 244 (493)
Q Consensus 177 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~-----~~g~~p~~~~ 244 (493)
..++..+...|++++|..+.+.+....|.+...|..+|.+|...|+..+|.+.|+++. +.|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444555556666666666666655555566666666666666666666666666553 2355555543
No 216
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.59 E-value=0.015 Score=39.73 Aligned_cols=55 Identities=20% Similarity=0.181 Sum_probs=32.6
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 011137 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411 (493)
Q Consensus 356 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 411 (493)
.|.+.+++++|.++++.+...+ +.+...+.....++.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4555666666666666666553 334555555666666666666666666666553
No 217
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.57 E-value=0.0098 Score=40.68 Aligned_cols=53 Identities=17% Similarity=0.100 Sum_probs=23.6
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011137 183 LCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235 (493)
Q Consensus 183 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 235 (493)
|.+.+++++|.++++.+....|.+...|.....++.+.|++++|.+.|+...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444444444444444443344444444444444444444444444444443
No 218
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.57 E-value=0.18 Score=48.90 Aligned_cols=162 Identities=16% Similarity=0.120 Sum_probs=91.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhcCCCC-Cc------chHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHH
Q 011137 176 FNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DV------ISYNVIANGWCL----VKRTNKALEVLKEMVDRGLNPNLTT 244 (493)
Q Consensus 176 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~------~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~ 244 (493)
+..++....-.||-+.+++.+....+.... .+ ..|+..+..++. ....+.|.++++.+.++ -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 345566666667777777766654332100 11 123333333333 34567777788777765 344444
Q ss_pred HH-HHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011137 245 YN-IVLKGYFRAGQIEEAWRFFLEMKKRK---CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320 (493)
Q Consensus 245 ~~-~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 320 (493)
|. .-.+.+...|++++|++.++...... .+.....+--+...+.-.+++++|.+.|..+.+..- -+..+|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHH
Confidence 33 34456667788888888887654321 122334445566667778888888888888877422 23444444433
Q ss_pred H-HHhcCCH-------HHHHHHHHHHHh
Q 011137 321 V-LCKKDSV-------ENAILVFEEMVG 340 (493)
Q Consensus 321 ~-~~~~~~~-------~~a~~~~~~~~~ 340 (493)
+ +...|+. ++|.++|.+...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 3 3345555 777777776643
No 219
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=0.96 Score=44.78 Aligned_cols=350 Identities=13% Similarity=0.149 Sum_probs=195.8
Q ss_pred CHHHHHHHHHHH------HhcCChHHHHHHHHHH--------hhCCCCCCHHHHHH-----HHHHHHHcCCHHHHHHHHH
Q 011137 102 SPSSFDHAIDLA------ARLRDYRTVWTLVHRM--------KSLSLGPTQKTFAI-----IAERYVSAGKADRAVKIFL 162 (493)
Q Consensus 102 ~~~~~~~li~~~------~~~~~~~~a~~~~~~~--------~~~~~~~~~~~~~~-----l~~~~~~~g~~~~a~~~~~ 162 (493)
.++.-..|+++. .+..++++-..+.+.+ .+.|++.+..-|.. ++..+...+.+..|+++-.
T Consensus 382 ~pe~QK~LL~AAsfGk~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~ 461 (829)
T KOG2280|consen 382 QPEEQKSLLRAASFGKASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAK 461 (829)
T ss_pred CHHHHHHHHHHHhhcccccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHH
Confidence 445555555432 2445566655555543 34467667666655 5677888899999999877
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHccCCH---HHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 011137 163 SMHEHGCRQSLNSFNTILDLLCKEKKV---EKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239 (493)
Q Consensus 163 ~~~~~~~~~~~~~~~~ll~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 239 (493)
.+...-.. ...+|.....-+.+..+. +.+..+-+++... -....+|..+.+-....|+.+-|..+++.=.+.+-.
T Consensus 462 ~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~q 539 (829)
T KOG2280|consen 462 LLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQ 539 (829)
T ss_pred HhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccch
Confidence 66532111 146677777777766432 2222222333332 245677888888888999999998887643222110
Q ss_pred ----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----------CCCCCHHHHHHHHHH--------HhccCCHHHH
Q 011137 240 ----PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR-----------KCEIDVVTYTTIVHG--------FGVVGEIKRA 296 (493)
Q Consensus 240 ----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~~~~~li~~--------~~~~g~~~~A 296 (493)
.+..-+...+.-+...|+.+-...++-.+... ..+.....|.-+++- +...++-.++
T Consensus 540 V~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~ 619 (829)
T KOG2280|consen 540 VPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQA 619 (829)
T ss_pred hHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhh
Confidence 11222344455566677777666666555443 111122222222220 1111111111
Q ss_pred HHHH--HHHH----HCCCCCCHHHHHHHHHHHHhcCCHH----------HHHHHHHHHHhC-CCCCChhhHHHHHHHHHh
Q 011137 297 RNVF--DGMV----NGGVLPSVATYNAMIQVLCKKDSVE----------NAILVFEEMVGK-GYMPNSTTYNVVIRGLCH 359 (493)
Q Consensus 297 ~~~~--~~~~----~~~~~~~~~~~~~li~~~~~~~~~~----------~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~ 359 (493)
...| +... ..+..|+ .......+.+..... +-+.+.+.+... |......+.+--+.-+..
T Consensus 620 ~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~ 696 (829)
T KOG2280|consen 620 LASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLIL 696 (829)
T ss_pred hhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHH
Confidence 1111 1100 0111222 223334444433311 112222222221 333344556666667778
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHH
Q 011137 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA 439 (493)
Q Consensus 360 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A 439 (493)
.|+-.+|.++-.+.+ -||-..|-.-+.++...+++++-+++-+... .+.-|.-.+.+|.+.|+.++ |
T Consensus 697 ~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~E---A 763 (829)
T KOG2280|consen 697 IGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDE---A 763 (829)
T ss_pred ccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHH---H
Confidence 888888888887776 5688888888889999999988777666554 24556778888889999888 8
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 011137 440 GKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478 (493)
Q Consensus 440 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 478 (493)
.+++-+... .. ....+|.+.|++.+|.++.
T Consensus 764 ~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 764 KKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hhhhhccCC-----hH----HHHHHHHHhccHHHHHHHH
Confidence 888776432 11 4566788888888876654
No 220
>PRK15331 chaperone protein SicA; Provisional
Probab=96.53 E-value=0.096 Score=41.61 Aligned_cols=88 Identities=10% Similarity=-0.045 Sum_probs=49.3
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 011137 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295 (493)
Q Consensus 216 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 295 (493)
-+...|++++|..+|.-+...+.- +..-+..|..++-..+++++|+..|......+.. |+..+-....+|...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHH
Confidence 344556666666666665544332 3444455555555666666666666655444322 34444445566666666666
Q ss_pred HHHHHHHHHH
Q 011137 296 ARNVFDGMVN 305 (493)
Q Consensus 296 A~~~~~~~~~ 305 (493)
|...|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 6666666555
No 221
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.52 E-value=0.26 Score=41.70 Aligned_cols=212 Identities=9% Similarity=0.095 Sum_probs=106.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011137 97 PTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSF 176 (493)
Q Consensus 97 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 176 (493)
+.+.--...|.....+|....++++|...+.+..+. ...+...|. ..+.++.|.-+.+++.+. +--+..|
T Consensus 25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~ 94 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLY 94 (308)
T ss_pred CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHH
Confidence 344445566777777888888888888776665431 112222222 123345555555555542 2234456
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh---CC--CCCCHHHHHHHHHH
Q 011137 177 NTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD---RG--LNPNLTTYNIVLKG 251 (493)
Q Consensus 177 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~---~g--~~p~~~~~~~l~~~ 251 (493)
+....+|..+|..+.|-..+++..+. .+.-++++|+.+|++... .+ ...-...+..+.+.
T Consensus 95 eKAs~lY~E~GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~ 159 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRV 159 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhH
Confidence 66677788888877776666554321 123445555555555432 11 01112234445555
Q ss_pred HHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHH
Q 011137 252 YFRAGQIEEAWRFFLEMKKR-----KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG---VLPSVATYNAMIQVLC 323 (493)
Q Consensus 252 ~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~ 323 (493)
+.+..++++|-..+.+-... .....-..|-..|-.|.-..|+..|.++++.-.+.+ -.-+..+...|+.+|
T Consensus 160 lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay- 238 (308)
T KOG1585|consen 160 LVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY- 238 (308)
T ss_pred hhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-
Confidence 66666666655544332211 011011223334444455556666766666643321 112344555555555
Q ss_pred hcCCHHHHHHH
Q 011137 324 KKDSVENAILV 334 (493)
Q Consensus 324 ~~~~~~~a~~~ 334 (493)
..||.+++..+
T Consensus 239 d~gD~E~~~kv 249 (308)
T KOG1585|consen 239 DEGDIEEIKKV 249 (308)
T ss_pred ccCCHHHHHHH
Confidence 34555554443
No 222
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.51 E-value=0.13 Score=49.07 Aligned_cols=168 Identities=13% Similarity=0.107 Sum_probs=85.6
Q ss_pred CCCHHHHHHHHHHHhhChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 011137 66 HWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145 (493)
Q Consensus 66 ~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 145 (493)
.+++..+.--...++++.+.+.+..+.-.--|.+| ....+.+++.+.+.|-.+.|+++...-. .-.
T Consensus 260 ~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rF 325 (443)
T PF04053_consen 260 ELDLSELEFKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPD------------HRF 325 (443)
T ss_dssp E--HHHHHHHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHH
T ss_pred EECHHHHHHHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHh
Confidence 45566665555566666666555543222112222 4456777777777777777766543321 123
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhH
Q 011137 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNK 225 (493)
Q Consensus 146 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 225 (493)
....+.|+++.|.++.++ ..+...|..|.+...+.|+++-|++.|++.. -|..|+-.|.-.|+.+.
T Consensus 326 eLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~ 391 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREK 391 (443)
T ss_dssp HHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHH
T ss_pred HHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHH
Confidence 334456777777665332 2355667777777777777777777666543 24556666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011137 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267 (493)
Q Consensus 226 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 267 (493)
..++.+.....|- ++....++.-.|+.++..+++.+
T Consensus 392 L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 392 LSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666655554431 33344444455666665555543
No 223
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.43 E-value=0.065 Score=41.04 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=30.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC-CCCCCHHHHHHHHHH
Q 011137 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG-VCLPNLDTYNILISS 426 (493)
Q Consensus 377 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~ 426 (493)
...|+..+..+++.+|+..|++..|+++.+...+. +++.+..+|..|+.-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34566666666666666666666666666665443 455556666666653
No 224
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.42 E-value=0.52 Score=40.44 Aligned_cols=58 Identities=10% Similarity=0.150 Sum_probs=31.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 353 VIRGLCHTGEMERALEFVGRMKDD--ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 353 li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
+.+.|.+.|.+..|..-+++|++. ...-....+-.+..+|...|-.++|.+.-+-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 344566666666666666666654 1111223344555566666666666555444443
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.34 E-value=0.0098 Score=41.34 Aligned_cols=61 Identities=26% Similarity=0.389 Sum_probs=32.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 011137 349 TYNVVIRGLCHTGEMERALEFVGRMKDD----EC-EPN-VQTYNILIRYFCDAGEIERGLELFEKMG 409 (493)
Q Consensus 349 ~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 409 (493)
+++.+...|...|++++|+..+++..+. |- .|+ ..++..+...|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555566666666666666555432 10 111 3445566666666666666666666554
No 226
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.28 E-value=0.014 Score=40.61 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=9.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 011137 210 YNVIANGWCLVKRTNKALEVLKEM 233 (493)
Q Consensus 210 ~~~l~~~~~~~~~~~~A~~~~~~m 233 (493)
|+.+...|...|++++|+..|++.
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~a 31 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKA 31 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333444444444444444444433
No 227
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.27 E-value=0.8 Score=41.05 Aligned_cols=123 Identities=14% Similarity=0.089 Sum_probs=61.9
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHH-------HHHHHHHHHHcC-CHHHHHHHHHHHHhC--------CCCCC-----
Q 011137 114 ARLRDYRTVWTLVHRMKSLSLGPTQKT-------FAIIAERYVSAG-KADRAVKIFLSMHEH--------GCRQS----- 172 (493)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~g-~~~~a~~~~~~~~~~--------~~~~~----- 172 (493)
.+.|+++.|..++.+........++.. +..+.......+ +++.|...+++..+. ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 456777777777777665431122222 222222333445 676666666554432 11111
Q ss_pred HHHHHHHHHHHHccCCHH---HHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011137 173 LNSFNTILDLLCKEKKVE---KAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236 (493)
Q Consensus 173 ~~~~~~ll~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 236 (493)
..++..++.+|...+..+ +|..+++.+....+.....+..-+..+.+.++.+++.+.+.+|+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 123445555555555433 3444444454444444445555555555566666666666666654
No 228
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.26 E-value=0.81 Score=41.02 Aligned_cols=101 Identities=9% Similarity=0.117 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011137 243 TTYNIVLKGYFRAGQIE---EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319 (493)
Q Consensus 243 ~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 319 (493)
.++..++.+|...+..+ +|.++++.+...... .+.++..-++.+.+.++.+.+.+++.+|+..- ......+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 34555666666665543 455555555444222 34455555666666777777777777777652 11223344444
Q ss_pred HHH---HhcCCHHHHHHHHHHHHhCCCCCC
Q 011137 320 QVL---CKKDSVENAILVFEEMVGKGYMPN 346 (493)
Q Consensus 320 ~~~---~~~~~~~~a~~~~~~~~~~~~~~~ 346 (493)
..+ ... ....|...++.+....+.|.
T Consensus 163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHHhh-CcHHHHHHHHHHHHHHhCCC
Confidence 433 222 23345555555544433333
No 229
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.21 E-value=0.16 Score=38.88 Aligned_cols=49 Identities=16% Similarity=0.006 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHC-CCCCCHHHHHHHHHH
Q 011137 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR-GFMPRKFTFNRVLNG 464 (493)
Q Consensus 413 ~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~ 464 (493)
..|+..+..+++.+|+..|++.. |+++++...+. ++.-+..+|..|+.-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~---al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFS---ALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHH---HHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34666666666666666666666 66666665543 555556666666663
No 230
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.15 E-value=0.11 Score=49.44 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH
Q 011137 242 LTTYNIVLKGYFRAGQIEEAWRFFL 266 (493)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~a~~~~~ 266 (493)
...|..|.....+.|+++-|++.|.
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~ 371 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQ 371 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3344444444444444444444443
No 231
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.13 E-value=0.066 Score=49.88 Aligned_cols=64 Identities=13% Similarity=0.043 Sum_probs=52.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 011137 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV----QTYNILIRYFCDAGEIERGLELFEKMGSG 411 (493)
Q Consensus 346 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 411 (493)
+...++.+..+|.+.|++++|+..|++.++. .|+. ..|..+..+|...|++++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567888888888889999999999888876 3442 35888888888999999999999888874
No 232
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.12 E-value=0.34 Score=36.70 Aligned_cols=139 Identities=17% Similarity=0.252 Sum_probs=80.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011137 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403 (493)
Q Consensus 324 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 403 (493)
-.|.+++..++..+.... .+..-+|.+|.-....-+-+-..+.++.+-+- .|. ..+|++.....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDi----------s~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDI----------SKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-G----------GG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------hhhcchHHHHH
Confidence 457777777777766654 24555666665555444444444444443321 111 12344444444
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483 (493)
Q Consensus 404 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (493)
.+-.+-. +.......+..+...|+-+. -.+++.++.+.+ .+++.....+..||.+.|+..++.+++..+-+
T Consensus 78 C~~~~n~-----~se~vD~ALd~lv~~~kkDq---Ldki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 78 CYAKRNK-----LSEYVDLALDILVKQGKKDQ---LDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHTT--------HHHHHHHHHHHHTT-HHH---HHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhcc-----hHHHHHHHHHHHHHhccHHH---HHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 4433322 44556667778888888888 667888887643 78899999999999999999999999999988
Q ss_pred cCCC
Q 011137 484 CGRL 487 (493)
Q Consensus 484 ~g~~ 487 (493)
.|..
T Consensus 149 kG~k 152 (161)
T PF09205_consen 149 KGLK 152 (161)
T ss_dssp TT-H
T ss_pred hchH
Confidence 8864
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.06 E-value=0.085 Score=49.18 Aligned_cols=66 Identities=12% Similarity=0.044 Sum_probs=54.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHccCCHHHHHHHHHHhhcC
Q 011137 135 GPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS-L---NSFNTILDLLCKEKKVEKAYNLFKVFRGK 202 (493)
Q Consensus 135 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 202 (493)
+.+...+..+..+|...|++++|+..|++.++.. |+ . .+|..+..+|...|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567889999999999999999999999988764 44 2 35888888999999999999988887653
No 234
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.05 E-value=2.1 Score=44.95 Aligned_cols=53 Identities=21% Similarity=0.395 Sum_probs=25.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCHH--HHHHHHHHHhccCCcccHHHHHHHHHHHH
Q 011137 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLD--TYNILISSMFVRKKSDDLLVAGKLLIEMV 447 (493)
Q Consensus 389 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~li~~~~~~~~~~~~~~A~~~~~~m~ 447 (493)
+.+|..+|++.+|+.+..++... -|.. +-..|+..+...++.-+ |-+++.+..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~e---Aa~il~e~~ 1026 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYE---AAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchh---HHHHHHHHh
Confidence 44455555555555555554431 1111 12445555555555555 555555544
No 235
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.04 E-value=0.61 Score=45.22 Aligned_cols=164 Identities=19% Similarity=0.161 Sum_probs=105.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHH
Q 011137 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV------VTYTTIVHGFGV----VGEIKRARNVFDGMVNGGVLPSVA 313 (493)
Q Consensus 244 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 313 (493)
.+..+++...-.|+-+.+++.+.+..+.+---.+ -.|...+..++. ..+.+.|.++++.+.+. -|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 3455666667778989998888887664311122 223333333333 45788899999999885 35665
Q ss_pred HHHHH-HHHHHhcCCHHHHHHHHHHHHhCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 011137 314 TYNAM-IQVLCKKDSVENAILVFEEMVGKGY---MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389 (493)
Q Consensus 314 ~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 389 (493)
.|... .+.+...|+.++|.+.|+....... +.....+--+..++.-..+|++|.+.|..+.+.+ .-+..+|.-+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 55443 4566778999999999997664211 1123345556667778899999999999998864 33344444333
Q ss_pred -HHHHhcCCH-------HHHHHHHHHHhc
Q 011137 390 -RYFCDAGEI-------ERGLELFEKMGS 410 (493)
Q Consensus 390 -~~~~~~g~~-------~~a~~~~~~~~~ 410 (493)
.++...|+. ++|.++|++...
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 333456777 788888877643
No 236
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.00 E-value=0.19 Score=43.38 Aligned_cols=116 Identities=16% Similarity=0.177 Sum_probs=63.5
Q ss_pred ChhhHHHHHHHHHhc-----CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHH
Q 011137 346 NSTTYNVVIRGLCHT-----GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420 (493)
Q Consensus 346 ~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 420 (493)
|..+|-..+..+... +.++-....++.|.+.|+.-|..+|+.|+..+-+..- .|. .++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-nvf 128 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-NVF 128 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-HHH
Confidence 555565555555432 3455555556666666666666666666666543211 111 111
Q ss_pred HHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHh
Q 011137 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ-GLAKEILRLQSR 483 (493)
Q Consensus 421 ~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 483 (493)
....--|- .+-.-+++++++|...|+.||.++-..|+++|.+.|-. .+..+++-.|-+
T Consensus 129 Q~~F~HYP-----~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 129 QKVFLHYP-----QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHhhCc-----hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 11111111 11122778888888888888888888888888776642 334444444444
No 237
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.56 Score=41.09 Aligned_cols=140 Identities=12% Similarity=0.120 Sum_probs=66.2
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcc-hHHHHHHHHHhcCChhHH
Q 011137 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVI-SYNVIANGWCLVKRTNKA 226 (493)
Q Consensus 148 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A 226 (493)
....|++.+|..+|....... +.+...-..+..+|...|+.+.|..++..+......+.. ....-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 444566666666666555432 222344445556666666666666666655443221111 111223333333333333
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccC
Q 011137 227 LEVLKEMVDRGLNP-NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK-CEIDVVTYTTIVHGFGVVG 291 (493)
Q Consensus 227 ~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g 291 (493)
..+-.+.-. .| |...-..+...+...|+.++|.+.+-.+.+++ -.-|...-..++..+.-.|
T Consensus 223 ~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 223 QDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 333333322 12 44444555556666666666655554444331 1224455555666555555
No 238
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.85 E-value=1 Score=38.70 Aligned_cols=54 Identities=15% Similarity=0.143 Sum_probs=23.8
Q ss_pred HHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcC
Q 011137 149 VSAGKADRAVKIFLSMHEHG--CRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK 202 (493)
Q Consensus 149 ~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 202 (493)
.+.|++++|.+.|+.+...- -+-...+.-.++.++.+.+++++|+..++++...
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 34455555555555554321 0112233333444455555555555555554443
No 239
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.68 E-value=0.37 Score=36.40 Aligned_cols=91 Identities=18% Similarity=0.097 Sum_probs=51.2
Q ss_pred HHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCCH
Q 011137 182 LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR-GLN--PNLTTYNIVLKGYFRAGQI 258 (493)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-g~~--p~~~~~~~l~~~~~~~g~~ 258 (493)
++...|+.+.|++.|.+...-.|.....||.-..++.-.|+.++|++-+++..+. |.. .--..|..-...|...|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 3455566666666666555555555566666666666666666666666655542 211 0112344444556666777
Q ss_pred HHHHHHHHHHHHCC
Q 011137 259 EEAWRFFLEMKKRK 272 (493)
Q Consensus 259 ~~a~~~~~~~~~~~ 272 (493)
+.|..-|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 77776666666555
No 240
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=1.4 Score=38.74 Aligned_cols=143 Identities=10% Similarity=0.045 Sum_probs=84.5
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011137 181 DLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260 (493)
Q Consensus 181 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 260 (493)
......|++.+|..+|+......+.+...--.++.+|...|+.+.|..++..+...--.........-+..+.+.....+
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 34566788888888888777666667777778888888888888888888877543222122222223444444444444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcC
Q 011137 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG--GVLPSVATYNAMIQVLCKKD 326 (493)
Q Consensus 261 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~ 326 (493)
...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.+. |.. |...-..++..+.--|
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 43433333332 225555666677777777777777776666543 221 3334444555544444
No 241
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.64 E-value=0.23 Score=37.42 Aligned_cols=91 Identities=16% Similarity=0.094 Sum_probs=59.0
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHH---HHHHHHHHHhccCC
Q 011137 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLD---TYNILISSMFVRKK 432 (493)
Q Consensus 356 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~---~~~~li~~~~~~~~ 432 (493)
+++..|+.+.|++.|.+.+..- +-....||.-.+++.-.|+.++|++-+++..+..-..... .|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4567788888888887777652 4466778888888877888888887777776642111222 23333344556667
Q ss_pred cccHHHHHHHHHHHHHCC
Q 011137 433 SDDLLVAGKLLIEMVDRG 450 (493)
Q Consensus 433 ~~~~~~A~~~~~~m~~~g 450 (493)
.+. |..-|+..-+.|
T Consensus 131 dd~---AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDA---ARADFEAAAQLG 145 (175)
T ss_pred hHH---HHHhHHHHHHhC
Confidence 666 667777766665
No 242
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.2 Score=45.68 Aligned_cols=61 Identities=15% Similarity=0.105 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011137 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305 (493)
Q Consensus 244 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 305 (493)
++..+.-++.+.+++.+|++..+..+..+.. |....-.-..++...|+++.|+..|+++++
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 4445555555555555555555555555322 444444445555555566666666655555
No 243
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.59 E-value=0.72 Score=35.00 Aligned_cols=140 Identities=12% Similarity=0.218 Sum_probs=73.3
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHH
Q 011137 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKAL 227 (493)
Q Consensus 148 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 227 (493)
..-.|..++..++..+.... .+..-+|-+|--....-+-+-..++++.+.+.+.-+ .+|+.....
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis------------~C~NlKrVi 76 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS------------KCGNLKRVI 76 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG------------G-S-THHHH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch------------hhcchHHHH
Confidence 34467777788887777653 344455555544444455555566666655443211 123333333
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 011137 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307 (493)
Q Consensus 228 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 307 (493)
..+-.+- .+.......+..+.+.|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 77 ~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 77 ECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3322221 13334455666777777777777777777652 34566667777777777777777777777777666
Q ss_pred C
Q 011137 308 V 308 (493)
Q Consensus 308 ~ 308 (493)
+
T Consensus 151 ~ 151 (161)
T PF09205_consen 151 L 151 (161)
T ss_dssp -
T ss_pred h
Confidence 5
No 244
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.58 E-value=0.9 Score=40.47 Aligned_cols=152 Identities=13% Similarity=0.039 Sum_probs=87.4
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHH----HHHHHHHhcCChh
Q 011137 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYN----VIANGWCLVKRTN 224 (493)
Q Consensus 149 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~ 224 (493)
...|++.+|-..++++.+. .+.|...++..=.++.-.|+.+.....++++.....+|...|. .+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3456666666666666653 4556666666666777777777777777766655444543332 2334455677777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHhccCCHHHHHHHHH
Q 011137 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE---IDVVTYTTIVHGFGVVGEIKRARNVFD 301 (493)
Q Consensus 225 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 301 (493)
+|++.-++..+.+.. |..+-......+-..|+..++.++..+-...=-. .-..-|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 777777776665433 5555566666666777777777665544332000 001112222233455577777777776
Q ss_pred H
Q 011137 302 G 302 (493)
Q Consensus 302 ~ 302 (493)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 5
No 245
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.57 E-value=0.87 Score=35.81 Aligned_cols=39 Identities=10% Similarity=0.103 Sum_probs=16.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 011137 250 KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289 (493)
Q Consensus 250 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 289 (493)
..+...+.......+++.+...+. .+...++.++..|++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 15 ELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 333333444444444444444332 233444444444443
No 246
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.32 Score=44.44 Aligned_cols=139 Identities=12% Similarity=0.105 Sum_probs=66.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChh
Q 011137 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTN 224 (493)
Q Consensus 145 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 224 (493)
...|.+.|++..|...|+.....= . |.+.-+.++.... .. .-..+++.+..++.+.+++.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l--~-----------~~~~~~~ee~~~~-~~------~k~~~~lNlA~c~lKl~~~~ 274 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFL--E-----------YRRSFDEEEQKKA-EA------LKLACHLNLAACYLKLKEYK 274 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHh--h-----------ccccCCHHHHHHH-HH------HHHHHhhHHHHHHHhhhhHH
Confidence 346788899999998888865420 0 0011111111111 00 01224445555555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH-HHHHHHHHH
Q 011137 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK-RARNVFDGM 303 (493)
Q Consensus 225 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~~ 303 (493)
+|++..++.+..+.. |+-..-.-..++...|+++.|+..|+++++.... |-..-+.|+.+-.+..+.. ...++|..|
T Consensus 275 ~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 275 EAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555544322 4445555555555555555555555555554222 3333333444333333322 234555555
Q ss_pred HH
Q 011137 304 VN 305 (493)
Q Consensus 304 ~~ 305 (493)
..
T Consensus 353 F~ 354 (397)
T KOG0543|consen 353 FA 354 (397)
T ss_pred hh
Confidence 43
No 247
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.43 E-value=0.54 Score=36.51 Aligned_cols=81 Identities=9% Similarity=0.032 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011137 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLG--PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182 (493)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 182 (493)
.+-.-.....+.|++++|.+.|+.+..+-+. -...+-..++.+|.+.+++++|...+++.++..-......|...+.+
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 3333444556778888888888888776321 23456667788888888888888888888765422222334444444
Q ss_pred HHc
Q 011137 183 LCK 185 (493)
Q Consensus 183 ~~~ 185 (493)
++.
T Consensus 92 L~~ 94 (142)
T PF13512_consen 92 LSY 94 (142)
T ss_pred HHH
Confidence 443
No 248
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.43 E-value=1.5 Score=37.62 Aligned_cols=94 Identities=15% Similarity=0.121 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH-
Q 011137 174 NSFNTILDLLCKEKKVEKAYNLFKVFRG--KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK- 250 (493)
Q Consensus 174 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~- 250 (493)
..+......+...+++..+...+..... ........+......+...+++..+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 3444444455555555555555444432 222333344444444555555555555555554432222 111111111
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 011137 251 GYFRAGQIEEAWRFFLEM 268 (493)
Q Consensus 251 ~~~~~g~~~~a~~~~~~~ 268 (493)
.+...|+++.+...+.+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~ 156 (291)
T COG0457 139 ALYELGDYEEALELYEKA 156 (291)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 444555555555555554
No 249
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.42 E-value=0.49 Score=42.02 Aligned_cols=154 Identities=7% Similarity=-0.132 Sum_probs=111.5
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHccCCHH
Q 011137 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH---GCRQSLNSFNTILDLLCKEKKVE 190 (493)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~g~~~ 190 (493)
-..|.+.+|-..++++.+. .+.|.-++...=.+|.-.|+.+.-...++++... +.+....+...+.-++..+|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3467888888888888876 4467888888888999999999999999888753 22222333344455677899999
Q ss_pred HHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011137 191 KAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR---GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267 (493)
Q Consensus 191 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 267 (493)
+|++.-++..+..+.|..+-.++...+-..|++.++.++..+-... +--.-..-|=...-.+...+.++.|+++|+.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 9999888887777778888888889999999999999987765421 1000111222233445566899999999975
Q ss_pred H
Q 011137 268 M 268 (493)
Q Consensus 268 ~ 268 (493)
-
T Consensus 273 e 273 (491)
T KOG2610|consen 273 E 273 (491)
T ss_pred H
Confidence 3
No 250
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.41 E-value=0.29 Score=42.32 Aligned_cols=98 Identities=13% Similarity=0.164 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CC-CCCHHHHHHHHH
Q 011137 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLG--PTQKTFAIIAERYVSAGKADRAVKIFLSMHEH-GC-RQSLNSFNTILD 181 (493)
Q Consensus 106 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~-~~~~~~~~~ll~ 181 (493)
|+..+.. .+.|++..|...|....+..+. -....+..|..++...|+++.|..+|..+.+. +- +--+..+-.|..
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5544443 3344455555555555554321 12334445555555555555555555555432 11 111234444455
Q ss_pred HHHccCCHHHHHHHHHHhhcCCC
Q 011137 182 LLCKEKKVEKAYNLFKVFRGKFK 204 (493)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~ 204 (493)
+..+.|+.++|...|+++.+++|
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCC
Confidence 55555555555555555555444
No 251
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.34 E-value=3.4 Score=41.18 Aligned_cols=321 Identities=11% Similarity=0.104 Sum_probs=180.2
Q ss_pred HHHcCCHHHHHHHHHHHH--------hCCCCCCHHHHH-----HHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHH
Q 011137 148 YVSAGKADRAVKIFLSMH--------EHGCRQSLNSFN-----TILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIA 214 (493)
Q Consensus 148 ~~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~-----~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 214 (493)
+.+..++++-..+.+.+. ..|++.+..-|. .+++-+...+.+..|+++-+.+.....-....|....
T Consensus 399 ~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa 478 (829)
T KOG2280|consen 399 SLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWA 478 (829)
T ss_pred ccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHH
Confidence 445556666655555443 446666666554 3566777888999999988777654322345666667
Q ss_pred HHHHhcCCh--hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHh
Q 011137 215 NGWCLVKRT--NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE----IDVVTYTTIVHGFG 288 (493)
Q Consensus 215 ~~~~~~~~~--~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~ 288 (493)
.-+.+..+. +++++.+++=..... .+..+|..+.+.....|+.+-|.++++.=...+.. .+..-+..-+.-..
T Consensus 479 ~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kai 557 (829)
T KOG2280|consen 479 RRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAI 557 (829)
T ss_pred HHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHH
Confidence 666665322 333333333332222 35567888888888999999999988643222111 12223344555566
Q ss_pred ccCCHHHHHHHHHHHHHCC-----------CCCCHHHHHHHHH--------HHHhcCCHHHHHHHH--HHHHhC-CCCCC
Q 011137 289 VVGEIKRARNVFDGMVNGG-----------VLPSVATYNAMIQ--------VLCKKDSVENAILVF--EEMVGK-GYMPN 346 (493)
Q Consensus 289 ~~g~~~~A~~~~~~~~~~~-----------~~~~~~~~~~li~--------~~~~~~~~~~a~~~~--~~~~~~-~~~~~ 346 (493)
+.||.+....++-.+.++- .+.....|.-+++ .+.+.++-.++...| +...+. -+.+-
T Consensus 558 es~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r 637 (829)
T KOG2280|consen 558 ESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGR 637 (829)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhccc
Confidence 7777777666665554320 1111112221111 011122222222221 110000 01111
Q ss_pred hhhHHHHHHHHHhcCCHHH----------HHHHHHHhhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 011137 347 STTYNVVIRGLCHTGEMER----------ALEFVGRMKDD-ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415 (493)
Q Consensus 347 ~~~~~~li~~~~~~~~~~~----------a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 415 (493)
.........++.+.....- -+++.+.+... +..-...+.+--+.-+...|+..+|.++-.+..- |
T Consensus 638 ~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki----p 713 (829)
T KOG2280|consen 638 IPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI----P 713 (829)
T ss_pred chhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC----c
Confidence 1223334444444433111 12222233222 3233344556666777788999999998888764 8
Q ss_pred CHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011137 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482 (493)
Q Consensus 416 ~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 482 (493)
|...|-.-+.+++..+++++ -.++.+.+. .+.-|.-++.+|.+.|+.++|.+++.+..
T Consensus 714 dKr~~wLk~~aLa~~~kwee---LekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 714 DKRLWWLKLTALADIKKWEE---LEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred chhhHHHHHHHHHhhhhHHH---HHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 99999999999999999987 445544432 24557778899999999999999886543
No 252
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.27 E-value=0.16 Score=43.80 Aligned_cols=88 Identities=18% Similarity=0.140 Sum_probs=60.7
Q ss_pred CcchHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------CHHHHHHH
Q 011137 206 DVISYNVIANGWCL-----VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG----------------QIEEAWRF 264 (493)
Q Consensus 206 ~~~~~~~l~~~~~~-----~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g----------------~~~~a~~~ 264 (493)
|..+|...+..+.. .+.++-....++.|.+-|+.-|..+|+.|++.+-+.. +-+-++++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 44445555444433 3445555666778888888888888888888764422 22457788
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 011137 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293 (493)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 293 (493)
+++|...|+-||..+-..|++++.+.+..
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 88888888888888888888888877753
No 253
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.11 E-value=0.51 Score=47.20 Aligned_cols=250 Identities=11% Similarity=0.070 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 011137 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS--LNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIAN 215 (493)
Q Consensus 138 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 215 (493)
......-+..+.+...++.|+.+-+. .+..++ ........+-+.+.|++++|...|-+-.....|. .++.
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s-----~Vi~ 405 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS-----EVIK 405 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH-----HHHH
Confidence 34455667777788888888776443 222222 1223333445567899999988877665554443 4556
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 011137 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295 (493)
Q Consensus 216 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 295 (493)
-|....+..+-..+++.+.+.|.. +...-..|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 667777788888888888888876 66677788999999999888777766554 3221 1113445666666777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 011137 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375 (493)
Q Consensus 296 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 375 (493)
|..+-.+... ....... .+-..+++++|++++..+.-...-+....|.. .+. ...+++-..++-+...
T Consensus 482 a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~slp~~e~l~~l~kyGk---~Ll-~h~P~~t~~ili~~~t 549 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSLPISELLRTLNKYGK---ILL-EHDPEETMKILIELIT 549 (933)
T ss_pred HHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHH---HHH-hhChHHHHHHHHHHHh
Confidence 7666554332 2333333 34467889999888876532211112222222 222 2355666666655554
Q ss_pred CCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHhcC
Q 011137 376 DECEPNVQTYN-----ILIRYFCDAGEIERGLELFEKMGSG 411 (493)
Q Consensus 376 ~~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~ 411 (493)
...++...... .+-....-.++++.-...++.|.+.
T Consensus 550 ~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~ 590 (933)
T KOG2114|consen 550 ELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEI 590 (933)
T ss_pred hcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHhc
Confidence 42222222221 1222223456777777777767663
No 254
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.07 E-value=1.9 Score=36.89 Aligned_cols=168 Identities=14% Similarity=0.054 Sum_probs=80.3
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011137 207 VISYNVIANGWCLVKRTNKALEVLKEMVDR-GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285 (493)
Q Consensus 207 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 285 (493)
...+......+...+.+..+...+...... ........+......+...+++..+.+.+.......... .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 345556666666667777776666666542 122244455555566666666666666666666543322 111222222
Q ss_pred -HHhccCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 011137 286 -GFGVVGEIKRARNVFDGMVNGGV--LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362 (493)
Q Consensus 286 -~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 362 (493)
.+...|+++.|...+++...... ......+......+...++.+.+...+..............+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 45566666666666666543211 011222222222334445555555555554443111112333444444444444
Q ss_pred HHHHHHHHHHhhh
Q 011137 363 MERALEFVGRMKD 375 (493)
Q Consensus 363 ~~~a~~~~~~~~~ 375 (493)
++.|...+.....
T Consensus 218 ~~~a~~~~~~~~~ 230 (291)
T COG0457 218 YEEALEYYEKALE 230 (291)
T ss_pred HHHHHHHHHHHHh
Confidence 4444444444443
No 255
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.04 E-value=0.77 Score=39.82 Aligned_cols=97 Identities=16% Similarity=0.171 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCCCHHHHHHHH
Q 011137 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYM--PNSTTYNVVIRGLCHTGEMERALEFVGRMKDD--ECEPNVQTYNILI 389 (493)
Q Consensus 314 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~ 389 (493)
.|+.-+..| +.|++..|...|...++.... -....+-.|..++...|+++.|..+|..+.+. ..+--+..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455544433 455577777777766665211 12234555667777777777777777776654 1122345566666
Q ss_pred HHHHhcCCHHHHHHHHHHHhcC
Q 011137 390 RYFCDAGEIERGLELFEKMGSG 411 (493)
Q Consensus 390 ~~~~~~g~~~~a~~~~~~~~~~ 411 (493)
....+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6667777777777777777664
No 256
>PRK11906 transcriptional regulator; Provisional
Probab=94.99 E-value=2.7 Score=39.69 Aligned_cols=161 Identities=9% Similarity=0.073 Sum_probs=93.3
Q ss_pred HHH--HHHHHHHHhcC-----ChHHHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHHc---------CCHHHHHHHHHHHH
Q 011137 104 SSF--DHAIDLAARLR-----DYRTVWTLVHRMKSL-SLGPT-QKTFAIIAERYVSA---------GKADRAVKIFLSMH 165 (493)
Q Consensus 104 ~~~--~~li~~~~~~~-----~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~ 165 (493)
..| ...+++..... +.+.|..+|.+.... ...|+ ...|..+..++... .+..+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 566 66666655532 345777788887722 23333 44555544443322 23445666666666
Q ss_pred hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCHHH
Q 011137 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN-PNLTT 244 (493)
Q Consensus 166 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~ 244 (493)
+.+ +.|......+..++.-.++++.|..+|++...-.|....+|......+.-.|+.++|.+.+++..+..+. .-...
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~ 410 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVV 410 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHH
Confidence 655 4566666666666666777888888887776665556666766666677778888888877776554221 11223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 011137 245 YNIVLKGYFRAGQIEEAWRFFL 266 (493)
Q Consensus 245 ~~~l~~~~~~~g~~~~a~~~~~ 266 (493)
....+..|+.. .++++++++-
T Consensus 411 ~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 411 IKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHcCC-chhhhHHHHh
Confidence 33334444433 3455555553
No 257
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.95 E-value=1.2 Score=40.06 Aligned_cols=156 Identities=8% Similarity=0.031 Sum_probs=72.6
Q ss_pred HHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHH-Hh---hcCC--CCCcchHHHHHHHHHh
Q 011137 148 YVSAGKADRAVKIFLSMHEHG--CRQSLNSFNTILDLLCKEKKVEKAYNLFK-VF---RGKF--KADVISYNVIANGWCL 219 (493)
Q Consensus 148 ~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~-~~---~~~~--~~~~~~~~~l~~~~~~ 219 (493)
+....+.++|+..+.+....- ......++..+..+.++.|.+++++..-- .| .+-. ..--.+|..+.+++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777766655321 11122345566666777777666554321 11 1110 0011234444455544
Q ss_pred cCChhHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhcc
Q 011137 220 VKRTNKALEVLKEMVDR-GLNP---NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK-----CEIDVVTYTTIVHGFGVV 290 (493)
Q Consensus 220 ~~~~~~A~~~~~~m~~~-g~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~ 290 (493)
..++.+++.+-+.-... |..| .-....++..++.-.+.++++++.|+...+.. ......+|..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 44555554444333221 2111 11223334455555556666666665554421 112234555566666666
Q ss_pred CCHHHHHHHHHHH
Q 011137 291 GEIKRARNVFDGM 303 (493)
Q Consensus 291 g~~~~A~~~~~~~ 303 (493)
.|+++|.-+..+.
T Consensus 176 ~D~~Kal~f~~kA 188 (518)
T KOG1941|consen 176 KDYEKALFFPCKA 188 (518)
T ss_pred HhhhHHhhhhHhH
Confidence 6666665554443
No 258
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.90 E-value=1.4 Score=34.55 Aligned_cols=9 Identities=22% Similarity=0.121 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 011137 105 SFDHAIDLA 113 (493)
Q Consensus 105 ~~~~li~~~ 113 (493)
.++.++..+
T Consensus 43 ~~~~li~ly 51 (140)
T smart00299 43 LQTKLIELY 51 (140)
T ss_pred HHHHHHHHH
Confidence 333333333
No 259
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.83 E-value=0.98 Score=40.69 Aligned_cols=163 Identities=12% Similarity=-0.038 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC-----CCCCHHH
Q 011137 314 TYNAMIQVLCKKDSVENAILVFEEMVGK-GYMP---NSTTYNVVIRGLCHTGEMERALEFVGRMKDDE-----CEPNVQT 384 (493)
Q Consensus 314 ~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~ 384 (493)
.|..+.+++.+..++.+++.+-..-... |..| ......++..++...+.++++++.|+...+-- .-....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 3444444444444555555544433322 2111 11223334555555666777777766655431 1122345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcC----CCCCCHH-----HHHHHHHHHhccCCcccHHHHHHHHHHHHH----CCC
Q 011137 385 YNILIRYFCDAGEIERGLELFEKMGSG----VCLPNLD-----TYNILISSMFVRKKSDDLLVAGKLLIEMVD----RGF 451 (493)
Q Consensus 385 ~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~~~-----~~~~li~~~~~~~~~~~~~~A~~~~~~m~~----~g~ 451 (493)
|..|...|.+..++++|.-+..+..+. ++.--.. ....|.-++...|+..+ |.+.-++..+ .|-
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~Lgd---A~e~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGD---AMECCEEAMKLALQHGD 241 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhccccc---HHHHHHHHHHHHHHhCC
Confidence 667777777777777776655544332 1111111 12223445566677776 5555555432 232
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 011137 452 MPR-KFTFNRVLNGLLLIGNQGLAKEILR 479 (493)
Q Consensus 452 ~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 479 (493)
++. ......+.+.|...|+.+.|+.-++
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 222 2233344556666777777665554
No 260
>PRK11906 transcriptional regulator; Provisional
Probab=94.75 E-value=3.7 Score=38.84 Aligned_cols=115 Identities=17% Similarity=0.081 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhh---cCCCCCcchHHHHHHHHHh---------cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011137 189 VEKAYNLFKVFR---GKFKADVISYNVIANGWCL---------VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256 (493)
Q Consensus 189 ~~~A~~~~~~~~---~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 256 (493)
.+.|..+|.+.. ...|.....|..+..++.. .....+|.++.++..+.+.. |......+..+....|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhc
Confidence 456666777666 2222224444444333322 11223444444444444333 4555555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011137 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305 (493)
Q Consensus 257 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 305 (493)
+++.|..+|++....+.. ...+|........-.|+.++|.+.+++..+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 555555555555554322 333343334444445555555555555443
No 261
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.70 E-value=2.5 Score=42.67 Aligned_cols=180 Identities=14% Similarity=0.128 Sum_probs=115.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011137 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL--TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286 (493)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 286 (493)
....-+..+++...++-|+.+-+.- +..++. .....-.+.+.+.|++++|...|-+.... ++|. .+|.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHH
Confidence 3455667777777788777665432 222222 22333344566788999988887766554 2222 35666
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011137 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366 (493)
Q Consensus 287 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 366 (493)
|....++..-..+++.+.+.|.. +...-..|+.+|.+.++.++-.+..+... .|.. ..-....+..|.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 77777778888888888888875 55566778889999999888777766544 2221 12245566667777777777
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 011137 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409 (493)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 409 (493)
..+-..... +......+ +-..|++++|+++++.+.
T Consensus 483 ~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 766655442 33343333 345688999999888764
No 262
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.57 E-value=0.086 Score=31.65 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=10.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 142 AIIAERYVSAGKADRAVKIFLSMHE 166 (493)
Q Consensus 142 ~~l~~~~~~~g~~~~a~~~~~~~~~ 166 (493)
..+...|.+.|++++|+++|+++.+
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 263
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.55 E-value=7.5 Score=41.13 Aligned_cols=32 Identities=16% Similarity=0.206 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 452 MPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483 (493)
Q Consensus 452 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (493)
.+-......|+.++...|..+.|.++-+.+.+
T Consensus 1181 e~~r~E~~~Ll~~l~~~g~~eqa~~Lq~~f~e 1212 (1265)
T KOG1920|consen 1181 ENIRNELKRLLEVLVTFGMDEQARALQKAFDE 1212 (1265)
T ss_pred hcccHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 33445566778888888888888776554443
No 264
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.54 E-value=0.42 Score=42.01 Aligned_cols=78 Identities=9% Similarity=0.140 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHHHHHHH
Q 011137 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD-----RGLNPNLTTYNIV 248 (493)
Q Consensus 174 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~~~~~~l 248 (493)
.++..++..+...|+++.+...++++....+-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45566777777777788887777777777777777788888888888888888777777654 4666666555444
Q ss_pred HHH
Q 011137 249 LKG 251 (493)
Q Consensus 249 ~~~ 251 (493)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 443
No 265
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.52 E-value=3.5 Score=37.19 Aligned_cols=133 Identities=16% Similarity=0.220 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHhCCC---CCChhhHHHHHHHHHhcCC-
Q 011137 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCK--KD----SVENAILVFEEMVGKGY---MPNSTTYNVVIRGLCHTGE- 362 (493)
Q Consensus 293 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~- 362 (493)
+++...+++.|.+.|..-+..+|-+....... .. ....|..+|+.|.+... .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566777777787777776666553333222 22 34568888888887732 2344555555543 2333
Q ss_pred ---HHHHHHHHHHhhhCCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 011137 363 ---MERALEFVGRMKDDECEPNV--QTYNILIRYFCDAGE--IERGLELFEKMGSGVCLPNLDTYNILISSM 427 (493)
Q Consensus 363 ---~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 427 (493)
.+.++.+|+.+.+.|+..+- .....++........ ..++.++++.+.+.|+++....|..+.-..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 35567778888876655442 333333333322222 457888889999988888777777665443
No 266
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.44 E-value=0.13 Score=30.78 Aligned_cols=37 Identities=8% Similarity=0.025 Sum_probs=16.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHH
Q 011137 176 FNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNV 212 (493)
Q Consensus 176 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 212 (493)
+..+...|.+.|++++|+++|++..+..|.|...|..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 3344444444444444444444444444444444433
No 267
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.28 E-value=4.8 Score=37.77 Aligned_cols=358 Identities=14% Similarity=0.157 Sum_probs=163.7
Q ss_pred HHhcCChHHHHHHHHHHhhC--CCCC---C---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHH
Q 011137 113 AARLRDYRTVWTLVHRMKSL--SLGP---T---------QKTFAIIAERYVSAGKADRAVKIFLSMHEH----GCRQSLN 174 (493)
Q Consensus 113 ~~~~~~~~~a~~~~~~~~~~--~~~~---~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~ 174 (493)
+-+.+++++|.+.+...... +-.+ + -..=+..+.++...|++.++..+++++... .+.-+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 34667777777777766554 2111 1 111233456677778888887777776543 3336677
Q ss_pred HHHHHHHHHHccCC---------------HHHHHHHHHHhhc-------CCCCCcchHHHHHHHHHhc--CChhHHHHHH
Q 011137 175 SFNTILDLLCKEKK---------------VEKAYNLFKVFRG-------KFKADVISYNVIANGWCLV--KRTNKALEVL 230 (493)
Q Consensus 175 ~~~~ll~~~~~~g~---------------~~~A~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~ 230 (493)
+|+.++-++.++=- ++.+.-+.++|.. .+.|.......++....-. .+..--.+++
T Consensus 169 ~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 169 MYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 77776655544211 1111111112211 1122222222222222111 1111111222
Q ss_pred HHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011137 231 KEMVDRGLNPNLTT-YNIVLKGYFRAGQIEEAWRFFLEMKKRKCE----IDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305 (493)
Q Consensus 231 ~~m~~~g~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 305 (493)
+.-...-+.|+-.. ...+...+.+ +.+++..+.+.+....+. -=..++..++....+.++...|.+.+.-+..
T Consensus 249 ~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 249 ENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 22222223343321 2223333322 445555554444333211 1244566677777777888877777766554
Q ss_pred CCCCCCHHHH-------HHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCChhhHHHHH---HHHHhcCC-HHHHHHHH
Q 011137 306 GGVLPSVATY-------NAMIQVLCKK----DSVENAILVFEEMVGKGYMPNSTTYNVVI---RGLCHTGE-MERALEFV 370 (493)
Q Consensus 306 ~~~~~~~~~~-------~~li~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li---~~~~~~~~-~~~a~~~~ 370 (493)
. .|+...- ..+-+..+.. -+...=+.+++......+. .......++ .-+.+.|. -++|+.++
T Consensus 327 l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLL 403 (549)
T PF07079_consen 327 L--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLL 403 (549)
T ss_pred c--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 2 2222211 1122222211 1122333344444443221 111112222 22344454 67777777
Q ss_pred HHhhhCCCCCCHHHHHHHH----HHHHh---cCCHHHHHHHHHHHhcCCCCC----CHHHHHHHHHH--HhccCCcccHH
Q 011137 371 GRMKDDECEPNVQTYNILI----RYFCD---AGEIERGLELFEKMGSGVCLP----NLDTYNILISS--MFVRKKSDDLL 437 (493)
Q Consensus 371 ~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~a~~~~~~~~~~~~~p----~~~~~~~li~~--~~~~~~~~~~~ 437 (493)
+.+.+-. +-|...-|.+. ..|.+ ...+.+-..+-+-+.+.|++| +...-|.|.++ +...|++.+
T Consensus 404 k~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~k-- 480 (549)
T PF07079_consen 404 KLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHK-- 480 (549)
T ss_pred HHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHH--
Confidence 7776642 22333322221 12221 223444444444445556654 33344445443 345566666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011137 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481 (493)
Q Consensus 438 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 481 (493)
+.-.-.-+.+ +.|+..+|..+.-++....++++|..++..+
T Consensus 481 -c~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 481 -CYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred -HHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 4444444443 6777777777777777777788887777654
No 268
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.22 E-value=2.1 Score=33.39 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=29.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 011137 251 GYFRAGQIEEAWRFFLEMKKRKC--EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307 (493)
Q Consensus 251 ~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 307 (493)
...+.|++++|.+.|+.+..+-. +-...+-..++.+|.+.+++++|...+++.++..
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 33455566666666666555411 1123344445555666666666666666655543
No 269
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.12 E-value=6.1 Score=38.43 Aligned_cols=357 Identities=12% Similarity=0.072 Sum_probs=169.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhC-CCC-CCHHHHH
Q 011137 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV-SAGKADRAVKIFLSMHEH-GCR-QSLNSFN 177 (493)
Q Consensus 101 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~-~~~-~~~~~~~ 177 (493)
..-.-|......=.+.|..+.+.++|++.... ++.+...|...+..+. ..|+.+.....|+..... |.. -....|.
T Consensus 77 l~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWd 155 (577)
T KOG1258|consen 77 LCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWD 155 (577)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHH
Confidence 34445666666666677777777777776653 4456666655554433 345666666666666542 211 1334566
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc------CChhHHHHHHHHHHh----------------
Q 011137 178 TILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV------KRTNKALEVLKEMVD---------------- 235 (493)
Q Consensus 178 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~m~~---------------- 235 (493)
..|.--..++++.....+++++.+...-....|..--..+.+. ...+++.++-.....
T Consensus 156 kyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~ 235 (577)
T KOG1258|consen 156 KYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEI 235 (577)
T ss_pred HHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHH
Confidence 6666666666666666666666543111111111111111111 112222221111110
Q ss_pred ----CCCCCCH--HHHHHHHH-------HHHhcCCHHHHHHHHHHHHHCC-------CCCCHHHHHHHHHHHhccCCHHH
Q 011137 236 ----RGLNPNL--TTYNIVLK-------GYFRAGQIEEAWRFFLEMKKRK-------CEIDVVTYTTIVHGFGVVGEIKR 295 (493)
Q Consensus 236 ----~g~~p~~--~~~~~l~~-------~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~ 295 (493)
.+.+.+. ...+.+.. ++-..-...+..-.++.-.++- ..++..+|...+..-.+.|+.+.
T Consensus 236 ~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~ 315 (577)
T KOG1258|consen 236 GVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSR 315 (577)
T ss_pred HHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHH
Confidence 0000000 00111111 1111111222222233322221 12345677777777788888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 011137 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM--PNSTTYNVVIRGLCHTGEMERALEFVGRM 373 (493)
Q Consensus 296 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 373 (493)
+.-+|+...-- +..=...|-..+.-....|+.+-|..++....+--++ |....+.+.+ .-..|++..|..+++.+
T Consensus 316 ~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i 392 (577)
T KOG1258|consen 316 VFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRI 392 (577)
T ss_pred HHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHH
Confidence 88888876542 1111233444444444457777777776655443222 2222222222 23357888888888888
Q ss_pred hhCCCCCCH-HHHHHHHHHHHhcCCHHHHH---HHHHHHhcCCCCCCHHHHHHHHHH-----HhccCCcccHHHHHHHHH
Q 011137 374 KDDECEPNV-QTYNILIRYFCDAGEIERGL---ELFEKMGSGVCLPNLDTYNILISS-----MFVRKKSDDLLVAGKLLI 444 (493)
Q Consensus 374 ~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~---~~~~~~~~~~~~p~~~~~~~li~~-----~~~~~~~~~~~~A~~~~~ 444 (493)
.+.- |+. ..-..-+....+.|+.+.+. +++....+... +......+.-- +.-.++.+. |..++.
T Consensus 393 ~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~~~i~~d~~~---a~~~l~ 465 (577)
T KOG1258|consen 393 ESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARLRYKIREDADL---ARIILL 465 (577)
T ss_pred HhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHHHHHHhcCHHH---HHHHHH
Confidence 7762 332 22222334445667777776 33333333211 11111111111 122344555 777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcC
Q 011137 445 EMVDRGFMPRKFTFNRVLNGLLLIG 469 (493)
Q Consensus 445 ~m~~~g~~p~~~~~~~l~~~~~~~g 469 (493)
++.+. +.++...|..++.-+...+
T Consensus 466 ~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 466 EANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred Hhhhc-CCccHHHHHHHHHHHHhCC
Confidence 77775 4566677777777555544
No 270
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.80 E-value=3.8 Score=34.98 Aligned_cols=55 Identities=15% Similarity=0.136 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011137 350 YNVVIRGLCHTGEMERALEFVGRMKDD---ECEPNVQTYNILIRYFCDAGEIERGLELF 405 (493)
Q Consensus 350 ~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 405 (493)
|...|-.+....++..|.+.++.-.+. .-.-+..+...|+.+| ..|+.+++.+++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 333344445555666666666653322 1122344555555555 345555554443
No 271
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.64 E-value=0.9 Score=37.37 Aligned_cols=60 Identities=22% Similarity=0.280 Sum_probs=28.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPN--VQTYNILIRYFCDAGEIERGLELFEKM 408 (493)
Q Consensus 349 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~ 408 (493)
.+..+...|++.|+.+.|++.|.++.+....+. ...+-.++......|++..+...+.+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344455555555555555555555544422211 223344444444555555555544444
No 272
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.61 E-value=1.2 Score=36.66 Aligned_cols=62 Identities=13% Similarity=0.216 Sum_probs=37.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011137 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN--LTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270 (493)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 270 (493)
.+..+...|++.|+.++|++.|.++.+....+. ...+-.+|+.....|++..+.....+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455666666666777777777666665433322 23445566666666666666666655544
No 273
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.44 E-value=1 Score=39.69 Aligned_cols=77 Identities=14% Similarity=0.188 Sum_probs=49.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 011137 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK-----RKCEIDVVTYTTI 283 (493)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 283 (493)
++..++..+...|+.+.+.+.++++...... +...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4556666666777777777777777766443 666777777777777777777777776655 2555555554444
Q ss_pred HHH
Q 011137 284 VHG 286 (493)
Q Consensus 284 i~~ 286 (493)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 333
No 274
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.34 E-value=3.6 Score=33.22 Aligned_cols=25 Identities=4% Similarity=0.259 Sum_probs=11.1
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcCCH
Q 011137 130 KSLSLGPTQKTFAIIAERYVSAGKA 154 (493)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~~~g~~ 154 (493)
.+.+++++...+..+++.+.+.|++
T Consensus 21 ~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 21 NQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 3344444444444444444444443
No 275
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.33 E-value=3.5 Score=33.13 Aligned_cols=124 Identities=15% Similarity=0.159 Sum_probs=69.7
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh-hHHHHHH--HHHhcCCH
Q 011137 288 GVVGEIKRARNVFDGMVNGGVLPS-VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST-TYNVVIR--GLCHTGEM 363 (493)
Q Consensus 288 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~--~~~~~~~~ 363 (493)
.+.+..++|+.-|.++.+.|...- .-....+.......|+...|...|+++-.....|-.. -...|=. .+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 344556666666666666544211 1112223334556777777777777776654444332 1112212 23456777
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 011137 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411 (493)
Q Consensus 364 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 411 (493)
+.....++-+...+-+.....-..|.-+-.+.|++.+|...|+++...
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 777666666655543333344456666667788888888888777664
No 276
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.22 E-value=3.5 Score=32.82 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=9.2
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 011137 217 WCLVKRTNKALEVLKEMVD 235 (493)
Q Consensus 217 ~~~~~~~~~A~~~~~~m~~ 235 (493)
+...|++.+|..+|+++..
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3444555555555555443
No 277
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.16 E-value=6.3 Score=35.55 Aligned_cols=134 Identities=13% Similarity=0.153 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh--cC----CHHHHHHHHHHhhhCCC---CCCHHHHHHHHHHHHhcCC-
Q 011137 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCH--TG----EMERALEFVGRMKDDEC---EPNVQTYNILIRYFCDAGE- 397 (493)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~- 397 (493)
+++...+++.|.+.|+.-+..+|-+....... .. ....|..+|+.|++... .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45567788899999988777666553333322 22 35678899999998732 2445556666544 3333
Q ss_pred ---HHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011137 398 ---IERGLELFEKMGSGVCLPN-LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463 (493)
Q Consensus 398 ---~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 463 (493)
.+.++.+|+.+.+.|+..+ ..-+.+-+-++......+...++..+++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 4667888899988887754 32333333344333333334568999999999999988777655443
No 278
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.15 E-value=8.2 Score=36.83 Aligned_cols=57 Identities=12% Similarity=0.132 Sum_probs=26.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 011137 318 MIQVLCKKDSVENAILVFEEMVGKGYM-PNSTTYNVVIRGLCHTGEMERALEFVGRMK 374 (493)
Q Consensus 318 li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 374 (493)
+..++.+.|+.++|.+.+++|.+.... ........|+.++...+.+.++..++.+..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 444444555555555555555433211 122234445555555555555555555543
No 279
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.06 E-value=7.6 Score=36.17 Aligned_cols=65 Identities=12% Similarity=0.106 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011137 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP---SVATYNAMIQVLCKKDSVENAILVFEEMVG 340 (493)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 340 (493)
...+|..++..+.+.|.++.|...+..+...+... +......-+...-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45567777777777888888877777776643111 223334445556667777777777777666
No 280
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.03 E-value=4 Score=32.86 Aligned_cols=133 Identities=11% Similarity=0.062 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHH--H
Q 011137 103 PSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQK-TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN-SFN--T 178 (493)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~--~ 178 (493)
-..|...+. +++.+..++|+.-|..+.+.|...-+. ....+.....+.|+...|+..|+++-.....|... -.. .
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 344544444 345555666666666666655422111 12223334455666666666666665433222221 011 1
Q ss_pred HHHHHHccCCHHHHHHHHHHhhcC-CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011137 179 ILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236 (493)
Q Consensus 179 ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 236 (493)
-.-.+...|.+++.....+-+... .+-....-..|.-+-.+.|++.+|.++|..+...
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 112345566666665555544322 2223334445555556667777777777666543
No 281
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.00 E-value=4.1 Score=32.91 Aligned_cols=130 Identities=12% Similarity=0.163 Sum_probs=59.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHHHH
Q 011137 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG--EIKRARNVFDGMVN 305 (493)
Q Consensus 228 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~ 305 (493)
++++.+.+.|+.|+...+..+++.+.+.|++.....+ ...++-+|.......+-.+.... -..-|.+++.++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~ 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT 90 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh
Confidence 4444555566666666777777777776665443333 33334334333333222221111 12223333333321
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 011137 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373 (493)
Q Consensus 306 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 373 (493)
.+..+++.+...|++-+|..+.+..... +......++.+..+.+|...-..+++-.
T Consensus 91 --------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 91 --------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred --------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2344555666666666666666554222 2222334455555555544433333333
No 282
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.00 E-value=2 Score=30.95 Aligned_cols=59 Identities=8% Similarity=0.008 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHH
Q 011137 156 RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIA 214 (493)
Q Consensus 156 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 214 (493)
+..+-++.+...+..|++.+..+.+.+|.+.+++..|.++|+.++.+.......|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 33444444445555555555666666666666666666666555544333333444433
No 283
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.85 E-value=10 Score=37.04 Aligned_cols=133 Identities=12% Similarity=0.079 Sum_probs=96.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 181 (493)
+...|..+|.--....+.+.+..++..+...- +.--..|......=.+.|..+.+.++|++... +++.+...|...+.
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky-Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKY-PLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLA 121 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHH
Confidence 44556666665555555677777888877653 23344667777777788999999999999886 46777778877766
Q ss_pred HHH-ccCCHHHHHHHHHHhhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011137 182 LLC-KEKKVEKAYNLFKVFRGKFK---ADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236 (493)
Q Consensus 182 ~~~-~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 236 (493)
.++ ..|+.+...+.|+....... .+...|...+..-...+++.....++++.++.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 544 45778888888887664322 34456888888888899999999999999864
No 284
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.77 E-value=8.7 Score=36.12 Aligned_cols=138 Identities=12% Similarity=0.166 Sum_probs=73.4
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--H
Q 011137 112 LAARLRDYRTVWTLVHRMKSLSLGPTQ------KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL--L 183 (493)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~ 183 (493)
.+-+.+++.++..+|.++.+..- .++ ..-+.++++|.. ++.+.....+....+.. | ...|-.+..+ +
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~-~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKE-SSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhh-cchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHH
Confidence 45567888888888888765421 221 123345666653 34444444444444321 2 2223333332 3
Q ss_pred HccCCHHHHHHHHHHhhcCCCCC---------------cchHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCCHHH
Q 011137 184 CKEKKVEKAYNLFKVFRGKFKAD---------------VISYNVIANGWCLVKRTNKALEVLKEMVDR----GLNPNLTT 244 (493)
Q Consensus 184 ~~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p~~~~ 244 (493)
.+.+++.+|.+.+..-.+....+ ...=+..+.++...|++.++..+++++... ...-+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 45677888887776544331111 111234556667777777777777766543 23346666
Q ss_pred HHHHHHHHHh
Q 011137 245 YNIVLKGYFR 254 (493)
Q Consensus 245 ~~~l~~~~~~ 254 (493)
|+.++-.+.+
T Consensus 170 yd~~vlmlsr 179 (549)
T PF07079_consen 170 YDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHhH
Confidence 6665555443
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.53 E-value=0.28 Score=27.81 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 011137 384 TYNILIRYFCDAGEIERGLELFEKMG 409 (493)
Q Consensus 384 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 409 (493)
+|..|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677778888888888888887744
No 286
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.42 E-value=13 Score=37.22 Aligned_cols=277 Identities=15% Similarity=0.133 Sum_probs=144.5
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHH----H-HHhcCChhHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhcC
Q 011137 189 VEKAYNLFKVFRGKFKADVISYNVIAN----G-WCLVKRTNKALEVLKEMVD-------RGLNPNLTTYNIVLKGYFRAG 256 (493)
Q Consensus 189 ~~~A~~~~~~~~~~~~~~~~~~~~l~~----~-~~~~~~~~~A~~~~~~m~~-------~g~~p~~~~~~~l~~~~~~~g 256 (493)
...|.++++...... +......+.. + +....+.+.|+.+|+.+.+ .| +......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g--~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG--HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhHHHHHHHHHHhhc--chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCC
Confidence 345666666554432 2222222222 2 3456788888888888766 44 2335556666666643
Q ss_pred -----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcC
Q 011137 257 -----QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV-VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC----KKD 326 (493)
Q Consensus 257 -----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~----~~~ 326 (493)
+.+.|..++......|.+ +....-..+..... ..+...|.++|....+.|.. ..+-.+..+|. -..
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVER 378 (552)
T ss_pred CCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCC
Confidence 566788888888777644 44433333333232 24677888888888877653 22222222222 234
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHH-HHHH---Hh----cCCH
Q 011137 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL-IRYF---CD----AGEI 398 (493)
Q Consensus 327 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~---~~----~g~~ 398 (493)
+.+.|..++.+..+.| .|...--...+..+.. ++++.+.-.+..+...+.. ...+-... +... .. ..+.
T Consensus 379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~ 455 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVISTL 455 (552)
T ss_pred CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccch
Confidence 6778888888888887 3332222223333333 6777777666666665433 11211111 1111 11 2245
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcc-CCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----CHHH
Q 011137 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVR-KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG----NQGL 473 (493)
Q Consensus 399 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~-~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g----~~~~ 473 (493)
+.+...+.+....| +......+.+.|... |-..+.+.|...+......+ ....|+ +. .+.+.| ++..
T Consensus 456 ~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~n-lg-~~~e~g~g~~~~~~ 527 (552)
T KOG1550|consen 456 ERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFN-LG-YMHEHGEGIKVLHL 527 (552)
T ss_pred hHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhh-hh-hHHhcCcCcchhHH
Confidence 66666666666543 555555555555443 22222333666666666554 222221 11 111211 1567
Q ss_pred HHHHHHHHHhcC
Q 011137 474 AKEILRLQSRCG 485 (493)
Q Consensus 474 a~~~~~~~~~~g 485 (493)
|.++++.....+
T Consensus 528 a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 528 AKRYYDQASEED 539 (552)
T ss_pred HHHHHHHHHhcC
Confidence 777777666654
No 287
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=92.04 E-value=15 Score=37.01 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRM 129 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 129 (493)
.+++.-|+ .+..+.-.|.++.|..+++..
T Consensus 146 ~~~p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 146 EHDPDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp SGSHHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred ccchhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 34477787 677788889999999988544
No 288
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.99 E-value=0.37 Score=27.29 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 011137 210 YNVIANGWCLVKRTNKALEVLKE 232 (493)
Q Consensus 210 ~~~l~~~~~~~~~~~~A~~~~~~ 232 (493)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445555555555555555554
No 289
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.67 E-value=2.2 Score=41.25 Aligned_cols=72 Identities=18% Similarity=0.139 Sum_probs=35.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011137 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403 (493)
Q Consensus 324 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 403 (493)
+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|.+... |..|+-.+...|+-+....
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 4555555555544332 344555666666666666666665555442 2234444444555443333
Q ss_pred HHHHHhc
Q 011137 404 LFEKMGS 410 (493)
Q Consensus 404 ~~~~~~~ 410 (493)
+-....+
T Consensus 714 la~~~~~ 720 (794)
T KOG0276|consen 714 LASLAKK 720 (794)
T ss_pred HHHHHHh
Confidence 3333333
No 290
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.47 E-value=0.014 Score=46.32 Aligned_cols=84 Identities=18% Similarity=0.270 Sum_probs=39.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 011137 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397 (493)
Q Consensus 318 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 397 (493)
++..+.+.+..+....+++.+...+...+....+.++..|++.++.+...++++... +.. ...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--~yd-----~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN--NYD-----LDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--SS------CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc--ccC-----HHHHHHHHHhcch
Confidence 344444555555555555555554434445555556666665555555555544111 111 1234444455555
Q ss_pred HHHHHHHHHHH
Q 011137 398 IERGLELFEKM 408 (493)
Q Consensus 398 ~~~a~~~~~~~ 408 (493)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 55555555443
No 291
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=91.43 E-value=7.3 Score=34.43 Aligned_cols=116 Identities=9% Similarity=0.116 Sum_probs=81.5
Q ss_pred hHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh-cC-ChHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011137 83 ALKALHFFNILSYHPTYAHSPSSFDHAIDLAAR-LR-DYRTVWTLVHRMKS-LSLGPTQKTFAIIAERYVSAGKADRAVK 159 (493)
Q Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 159 (493)
-.+|+.+|+.......+-.|...-..+++.... .+ ......++.+-+.. .+-.++..+...++..++..+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 356888888654433456677787887777766 22 22333344444432 2455788888889999999999999999
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 011137 160 IFLSMHEH-GCRQSLNSFNTILDLLCKEKKVEKAYNLFKV 198 (493)
Q Consensus 160 ~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 198 (493)
+++..... +...|...|..+|......|+..-...+.+.
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 88877654 4556778899999999999998887777654
No 292
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.41 E-value=5.5 Score=33.11 Aligned_cols=78 Identities=15% Similarity=0.209 Sum_probs=48.3
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHccCCHH
Q 011137 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH---GCRQSLNSFNTILDLLCKEKKVE 190 (493)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~g~~~ 190 (493)
.+.|+ +.|.+.|-.+...+.-.++.....+...|. ..+.++++.++-...+. +-.+|+..+..|...+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 355555666666655455555555555554 66777777777766532 22456777777777777777777
Q ss_pred HHH
Q 011137 191 KAY 193 (493)
Q Consensus 191 ~A~ 193 (493)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 663
No 293
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=91.35 E-value=3 Score=29.75 Aligned_cols=47 Identities=19% Similarity=0.302 Sum_probs=27.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcC
Q 011137 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS-RCG 485 (493)
Q Consensus 439 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~g 485 (493)
+.+-++.+....+.|+.....+.++||.+.+|+..|.++++..+ |+|
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~ 73 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG 73 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc
Confidence 44455555555566666666666666666666666666666444 444
No 294
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.74 E-value=0.33 Score=27.12 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=14.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHH
Q 011137 379 EPNVQTYNILIRYFCDAGEIERGL 402 (493)
Q Consensus 379 ~~~~~~~~~l~~~~~~~g~~~~a~ 402 (493)
+-+...|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 335556666666666666666654
No 295
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.71 E-value=16 Score=34.99 Aligned_cols=56 Identities=11% Similarity=0.160 Sum_probs=25.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 213 IANGWCLVKRTNKALEVLKEMVDRGLNP-NLTTYNIVLKGYFRAGQIEEAWRFFLEM 268 (493)
Q Consensus 213 l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 268 (493)
+..++.+.|+.++|.+.+++|.+..... .......|+.++...+.+.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 4444444555555555555554332111 1223344555555555555555555544
No 296
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.52 E-value=0.69 Score=25.58 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 384 TYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 384 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
+|..+...|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455556666666666666666665554
No 297
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.51 E-value=0.22 Score=27.84 Aligned_cols=21 Identities=24% Similarity=0.224 Sum_probs=8.9
Q ss_pred CcchHHHHHHHHHhcCChhHH
Q 011137 206 DVISYNVIANGWCLVKRTNKA 226 (493)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~A 226 (493)
+..+|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 334444444444444444443
No 298
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.50 E-value=5.1 Score=35.63 Aligned_cols=49 Identities=14% Similarity=0.253 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 011137 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375 (493)
Q Consensus 327 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 375 (493)
+.++++.++..=+..|+-||.++++.+|+.+.+.+++.+|.++...|+.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3344444444444445555555555555555555555555444444433
No 299
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.48 E-value=22 Score=36.14 Aligned_cols=230 Identities=14% Similarity=0.176 Sum_probs=95.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh---
Q 011137 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG-VLPSVATYNAMIQVLCK--- 324 (493)
Q Consensus 249 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~--- 324 (493)
...+.-.|+++.|++.+-. ..+...+.+++...+..|.-.+-.+... ..+.... -.|....+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3445567899999988876 2233446666666665554433322222 2222110 00112557778888876
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHH-HHHHHHHhcCCHHHHH-----------HHHHH---hhhCCCCCCHH---HHH
Q 011137 325 KDSVENAILVFEEMVGKGYMPNSTTYN-VVIRGLCHTGEMERAL-----------EFVGR---MKDDECEPNVQ---TYN 386 (493)
Q Consensus 325 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~-----------~~~~~---~~~~~~~~~~~---~~~ 386 (493)
..+..+|.+++--+....-+.....+. .+-......++++.-+ -++++ +.... .++.. +..
T Consensus 340 ~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~-~~~~~~~~i~~ 418 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFD-DDEDFLREIIE 418 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-S-SSSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCC-CcHHHHHHHHH
Confidence 457778888887665542211112222 2222222333332211 11111 11111 11222 223
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcc-CC-------ccc-HHHHHHHHHHHHHCC-----CC
Q 011137 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR-KK-------SDD-LLVAGKLLIEMVDRG-----FM 452 (493)
Q Consensus 387 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~-~~-------~~~-~~~A~~~~~~m~~~g-----~~ 452 (493)
....-+...|++++|..+|.-..+. ..-....+.++.-.... .. .++ ...|..+.+.....+ +.
T Consensus 419 ~~A~~~e~~g~~~dAi~Ly~La~~~--d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~ 496 (613)
T PF04097_consen 419 QAAREAEERGRFEDAILLYHLAEEY--DKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVS 496 (613)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHTT-H--HHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhcc
Confidence 3444566788888888888877652 11122333333332222 22 233 111333333322211 11
Q ss_pred -CCHHHHHHHHH-----HHHHcCCHHHHHHHHHHHHhcCCCCc
Q 011137 453 -PRKFTFNRVLN-----GLLLIGNQGLAKEILRLQSRCGRLPR 489 (493)
Q Consensus 453 -p~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~~g~~~~ 489 (493)
-+..|+..|+. .+...|++++|.+.+ .+.++.|.
T Consensus 497 ~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i---~~L~liP~ 536 (613)
T PF04097_consen 497 RKNRETFQLLLDLAEFFDLYHAGQYEQALDII---EKLDLIPL 536 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH---HHTT-S-S
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH---HhCCCCCC
Confidence 12456666655 357799999996655 44556663
No 300
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.19 E-value=10 Score=31.90 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011137 456 FTFNRVLNGLLLIGNQGLAKEILRLQS 482 (493)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 482 (493)
+||-.+.+-+...|+.++|..+|+...
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 355556666666777777766666544
No 301
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.12 E-value=3.1 Score=36.92 Aligned_cols=102 Identities=13% Similarity=0.228 Sum_probs=54.3
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcC----CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 011137 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK----FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243 (493)
Q Consensus 168 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 243 (493)
|.+....+...++..-....+++.++..+-+++.. ..++. +-.++++.+. .-+.++++.++..=++-|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 33344444444454444455666666665555432 11111 1122223222 234556666666666666666777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011137 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKR 271 (493)
Q Consensus 244 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 271 (493)
+++.+|+.+.+.+++.+|.++.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 7777777777777766666666555443
No 302
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.88 E-value=3.9 Score=33.95 Aligned_cols=71 Identities=11% Similarity=0.121 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 011137 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD---ECEPNVQTYNILIRYFCDAGEIERG 401 (493)
Q Consensus 330 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a 401 (493)
.|...|-.+...+..-++.....+...|. ..+.+++..++.+..+. +-.+|+..+..|+..|.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44444444444443334444444444333 33445555555544433 1244455555555555555555544
No 303
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.53 E-value=4.4 Score=29.27 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=16.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011137 441 KLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479 (493)
Q Consensus 441 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 479 (493)
+-++.+....+.|+..+..+.+++|.+.+++..|.++|+
T Consensus 31 rglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE 69 (108)
T PF02284_consen 31 RGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILE 69 (108)
T ss_dssp HHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 333344444444444444444444544455544444444
No 304
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.51 E-value=12 Score=31.57 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011137 314 TYNAMIQVLCKKDSVENAILVFEEMVGK 341 (493)
Q Consensus 314 ~~~~li~~~~~~~~~~~a~~~~~~~~~~ 341 (493)
||--+.+.+...|+.++|..+|+-.+..
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 4445555555566666666666555443
No 305
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.42 E-value=25 Score=35.23 Aligned_cols=16 Identities=13% Similarity=0.154 Sum_probs=9.0
Q ss_pred cCCHHHHHHHHHHHHh
Q 011137 151 AGKADRAVKIFLSMHE 166 (493)
Q Consensus 151 ~g~~~~a~~~~~~~~~ 166 (493)
..+.+.|+..|+.+.+
T Consensus 262 ~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAE 277 (552)
T ss_pred cccHHHHHHHHHHHHH
Confidence 3456666666655544
No 306
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.30 E-value=0.98 Score=24.83 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 384 TYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 384 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
.|..+...+...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445556666666666666666666554
No 307
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.04 E-value=6.6 Score=28.09 Aligned_cols=43 Identities=5% Similarity=0.017 Sum_probs=20.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 011137 158 VKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR 200 (493)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 200 (493)
.+-++.+...+..|++.+..+.+++|-+.+|+..|.++|+.++
T Consensus 27 rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 27 RRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333444444444444444444444444455555554444444
No 308
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.03 E-value=13 Score=36.37 Aligned_cols=150 Identities=11% Similarity=0.061 Sum_probs=77.2
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHH
Q 011137 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEV 229 (493)
Q Consensus 150 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 229 (493)
-.|+++.|..++..+. ....+.+...+.+.|-.++|+++- +|... -.....+.|+++.|.++
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s--------~D~d~---rFelal~lgrl~iA~~l 659 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS--------TDPDQ---RFELALKLGRLDIAFDL 659 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC--------CChhh---hhhhhhhcCcHHHHHHH
Confidence 3566666655444332 123345555566666666665431 12211 11223345666666665
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 011137 230 LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309 (493)
Q Consensus 230 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 309 (493)
..+.. +..-|..|.++..+.|++..|.+.|..... |..|+-.+...|+-+....+-....+.|..
T Consensus 660 a~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~ 724 (794)
T KOG0276|consen 660 AVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN 724 (794)
T ss_pred HHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc
Confidence 55443 455666667766677776666666655433 334555555556555444444444444332
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 310 PSVATYNAMIQVLCKKDSVENAILVFEEM 338 (493)
Q Consensus 310 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 338 (493)
|. ..-+|...|+++++.+++..-
T Consensus 725 -N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 725 -NL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred -ch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 22 222344566666666665443
No 309
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=88.12 E-value=16 Score=32.05 Aligned_cols=87 Identities=16% Similarity=0.187 Sum_probs=42.4
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----
Q 011137 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK---- 185 (493)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---- 185 (493)
|.+++..++|++++...-+--+..-+....+...-|-.|.+.+.+..+.++-.......-..+..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5566666666666554444333222233444555555566666666666655555443222222334444443332
Q ss_pred -cCCHHHHHHHH
Q 011137 186 -EKKVEKAYNLF 196 (493)
Q Consensus 186 -~g~~~~A~~~~ 196 (493)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 45566555444
No 310
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.02 E-value=17 Score=31.64 Aligned_cols=48 Identities=8% Similarity=0.180 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHh
Q 011137 152 GKADRAVKIFLSMHEHGCRQSL---NSFNTILDLLCKEKKVEKAYNLFKVF 199 (493)
Q Consensus 152 g~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~A~~~~~~~ 199 (493)
.++++|+.-|++..+..-.... .....++..+.+.|++++....++++
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~ql 91 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQL 91 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 3556666666665543211111 22233445555555655555555544
No 311
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.45 E-value=64 Score=37.60 Aligned_cols=316 Identities=10% Similarity=0.054 Sum_probs=152.3
Q ss_pred HhhChHHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 011137 79 LWNHALKALHFFNILSYHPTY-AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRA 157 (493)
Q Consensus 79 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 157 (493)
-+..+.+|+-.++.......- .-....|..+...|+..++++...-+...-.. +...+ ..|......|+++.|
T Consensus 1395 rc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~e~~g~~~da 1468 (2382)
T KOG0890|consen 1395 RCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEHEASGNWADA 1468 (2382)
T ss_pred hhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHHHhhccHHHH
Confidence 344456677666663111000 01222344455588888888887776664111 22222 233345567899999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHH-HHHHHhcCChhHHHHHHHHHHhC
Q 011137 158 VKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVI-ANGWCLVKRTNKALEVLKEMVDR 236 (493)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~m~~~ 236 (493)
...|+.+.+.+ ++....++-++......|.+....-..+-......+....|+.+ ..+--+.++++....... +.
T Consensus 1469 ~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~ 1544 (2382)
T KOG0890|consen 1469 AACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS---DR 1544 (2382)
T ss_pred HHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cc
Confidence 99999998765 34466677777777777888777765555544434444444433 233345666666666554 22
Q ss_pred CCCCCHHHHHH--HHHHHHhcC--CHHHHHHHHHHHHHCC--------CC-CCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 011137 237 GLNPNLTTYNI--VLKGYFRAG--QIEEAWRFFLEMKKRK--------CE-IDVVTYTTIVHGFGVVGEIKRARNVFDGM 303 (493)
Q Consensus 237 g~~p~~~~~~~--l~~~~~~~g--~~~~a~~~~~~~~~~~--------~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 303 (493)
+..+|.. ++....+.. +.-...+..+.+.+.- .. .-...|..++....-..--.....++.--
T Consensus 1545 ----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s 1620 (2382)
T KOG0890|consen 1545 ----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVS 1620 (2382)
T ss_pred ----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 2222222 222222221 1111112222222211 11 01123333333322111111111111000
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHhC----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 011137 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE-MVGK----GYM-PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377 (493)
Q Consensus 304 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 377 (493)
.......+...|..-+..-....+..+-+--+++ +... +.. --..+|-...+.....|.++.|...+-+..+.+
T Consensus 1621 ~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r 1700 (2382)
T KOG0890|consen 1621 YDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR 1700 (2382)
T ss_pred ccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc
Confidence 0001111122222222211111112221111111 1111 111 124567777777777899998888877777665
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 011137 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411 (493)
Q Consensus 378 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 411 (493)
. ...+--.+......|+...|+.++++..+.
T Consensus 1701 -~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1701 -L--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred -c--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 2 345666777888889999999998887754
No 312
>PRK09687 putative lyase; Provisional
Probab=87.29 E-value=21 Score=31.95 Aligned_cols=17 Identities=24% Similarity=0.180 Sum_probs=7.0
Q ss_pred ChhhHHHHHHHHHhcCC
Q 011137 346 NSTTYNVVIRGLCHTGE 362 (493)
Q Consensus 346 ~~~~~~~li~~~~~~~~ 362 (493)
+..+-...+.++.+.|+
T Consensus 205 ~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD 221 (280)
T ss_pred ChHHHHHHHHHHHccCC
Confidence 33333444444444444
No 313
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.05 E-value=30 Score=33.35 Aligned_cols=179 Identities=13% Similarity=0.093 Sum_probs=98.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 179 (493)
+.|....-+++..++.+..++-+..+..+|...| .+--.|..++.+|... ..++-..+++++.+..+ .|+..-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence 4566667777777777777777777777777655 3666777777777766 44566677777766543 233333344
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCc------chHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHH
Q 011137 180 LDLLCKEKKVEKAYNLFKVFRGKFKADV------ISYNVIANGWCLVKRTNKALEVLKEMVD-RGLNPNLTTYNIVLKGY 252 (493)
Q Consensus 180 l~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~~ 252 (493)
...|- .++...+..+|..+..++-|.. ..|..+...- ..+.+..+.+..++.. .|..--.+.+.-+-.-|
T Consensus 139 a~~yE-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYE-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 44443 3666677777766554432211 1333333211 3344555555555442 23333334444455555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011137 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286 (493)
Q Consensus 253 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 286 (493)
....++++|++++..+.+.+-. |..+...++..
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~ 248 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEK-DVWARKEIIEN 248 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHH
Confidence 5666666666666666655332 44444444443
No 314
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.00 E-value=1.7 Score=23.89 Aligned_cols=26 Identities=12% Similarity=0.322 Sum_probs=10.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHH
Q 011137 280 YTTIVHGFGVVGEIKRARNVFDGMVN 305 (493)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~~~~~ 305 (493)
|..+..+|...|++++|+..|++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 33444444444444444444444433
No 315
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.96 E-value=14 Score=29.52 Aligned_cols=19 Identities=11% Similarity=0.121 Sum_probs=9.4
Q ss_pred HHccCCHHHHHHHHHHhhc
Q 011137 183 LCKEKKVEKAYNLFKVFRG 201 (493)
Q Consensus 183 ~~~~g~~~~A~~~~~~~~~ 201 (493)
+...|++.+|..+|+.+..
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3444555555555555443
No 316
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.92 E-value=6.8 Score=36.99 Aligned_cols=121 Identities=9% Similarity=0.096 Sum_probs=79.7
Q ss_pred HHHcCCHHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHH
Q 011137 148 YVSAGKADRAVK-IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKA 226 (493)
Q Consensus 148 ~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 226 (493)
-...|+...|-+ ++.-+....-.|+.....+ ..+...|+++.+...+....+.......+...+++...+.|++++|
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 344566655543 4444444433444443333 3456779999998888777666666667888889999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011137 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271 (493)
Q Consensus 227 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 271 (493)
...-+-|....++ +...........-..|-++++.-.|+++...
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 9998888877666 4444433333344556677777777776654
No 317
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.77 E-value=39 Score=34.39 Aligned_cols=38 Identities=11% Similarity=0.111 Sum_probs=15.2
Q ss_pred HHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHh
Q 011137 182 LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCL 219 (493)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 219 (493)
-+.++|++++|.++..............+...+..|..
T Consensus 120 y~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 120 YCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYAS 157 (613)
T ss_dssp HHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTT
T ss_pred HHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHh
Confidence 34444444444444433333333333344444444433
No 318
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.76 E-value=22 Score=31.51 Aligned_cols=70 Identities=9% Similarity=0.080 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 011137 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK-----RKCEIDVVTY 280 (493)
Q Consensus 210 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~ 280 (493)
++.....|..+|.+.+|.++.++....+. .+...+..++..+...|+--.+.+-++.+.+ .|+..+...+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 44556677888888888888888776543 3667777888888888887666666665543 2555554443
No 319
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.65 E-value=1.7 Score=25.23 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 383 QTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 383 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4667777788888888888887777654
No 320
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.48 E-value=11 Score=31.16 Aligned_cols=55 Identities=16% Similarity=0.145 Sum_probs=26.5
Q ss_pred HHHccCCHHHHHHHHHHhhcCCCCCc-----chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011137 182 LLCKEKKVEKAYNLFKVFRGKFKADV-----ISYNVIANGWCLVKRTNKALEVLKEMVDR 236 (493)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 236 (493)
-+.+.|++++|..-|......+++.. ..|..-..++.+.+.++.|++-..+.++.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel 163 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL 163 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc
Confidence 35566666666666665555443322 12333333444444444444444444443
No 321
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.42 E-value=8.6 Score=31.84 Aligned_cols=90 Identities=14% Similarity=0.071 Sum_probs=51.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc
Q 011137 146 ERYVSAGKADRAVKIFLSMHEHGCRQSL-----NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV 220 (493)
Q Consensus 146 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 220 (493)
.-+...|++++|..-|...+..- ++.. ..|..-..++.+.+.++.|+.-........+....+...-..+|-+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 34667788888888777777642 2221 23334445566677777776655544443333333333334556666
Q ss_pred CChhHHHHHHHHHHhC
Q 011137 221 KRTNKALEVLKEMVDR 236 (493)
Q Consensus 221 ~~~~~A~~~~~~m~~~ 236 (493)
..+++|+.-|.++.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 6666666666666554
No 322
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=85.95 E-value=4.9 Score=38.93 Aligned_cols=131 Identities=12% Similarity=0.073 Sum_probs=89.0
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011137 190 EKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269 (493)
Q Consensus 190 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 269 (493)
+-+..++..|.....|-..+.|...-.+.-.|+...|.+.+.........-..+....+.....+.|....|-.++.+..
T Consensus 590 e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l 669 (886)
T KOG4507|consen 590 EIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQAL 669 (886)
T ss_pred HHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 44555555666555565566665555566688888888888877654433344456667777778888888888888877
Q ss_pred HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011137 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322 (493)
Q Consensus 270 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 322 (493)
... ...+-++..+.++|....+++.|++.|++..+.... +...-+.|...-
T Consensus 670 ~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 670 AIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK-CPECENSLKLIR 720 (886)
T ss_pred hhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHHHH
Confidence 765 335667777888888888999999999888776332 444444444433
No 323
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=85.56 E-value=12 Score=28.89 Aligned_cols=69 Identities=7% Similarity=0.048 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011137 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR--KFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484 (493)
Q Consensus 415 p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 484 (493)
++..+--.+..++.+..+.++..+.+.++++..+.. .|+ ......|.-++.+.|++++++++++.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 444455555556666666555555666666666422 222 223333444566666666666666655554
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.31 E-value=2.5 Score=24.45 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 244 TYNIVLKGYFRAGQIEEAWRFFLEM 268 (493)
Q Consensus 244 ~~~~l~~~~~~~g~~~~a~~~~~~~ 268 (493)
+++.+...|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 3444444444444444444444443
No 325
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.04 E-value=7.3 Score=32.74 Aligned_cols=76 Identities=21% Similarity=0.259 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCCCHHHHHHHHHH
Q 011137 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD--ECEPNVQTYNILIRY 391 (493)
Q Consensus 315 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~ 391 (493)
.+.-+..+.+.+...+++...++-.+.+. .|..+-..+++.+|-.|+|++|..-++-.-.. ...+...+|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34455666677777777777766666532 25555666777777777777777666655443 223344555555544
No 326
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.98 E-value=52 Score=34.17 Aligned_cols=222 Identities=12% Similarity=0.046 Sum_probs=109.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHH-HHHhccCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 011137 253 FRAGQIEEAWRFFLEMKKRKCEIDVV-------TYTTIV-HGFGVVGEIKRARNVFDGMVNG----GVLPSVATYNAMIQ 320 (493)
Q Consensus 253 ~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~li-~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~ 320 (493)
....++++|..+..++...-..|+.. .++.+- ......|++++|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34567778877777766542222211 222222 1234567778887777766543 12234555666677
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH---HH--HHHHhcCCH--HHHHHHHHHhhhC---CC---CCCHHHHHH
Q 011137 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNV---VI--RGLCHTGEM--ERALEFVGRMKDD---EC---EPNVQTYNI 387 (493)
Q Consensus 321 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---li--~~~~~~~~~--~~a~~~~~~~~~~---~~---~~~~~~~~~ 387 (493)
+..-.|++++|..+..+..+..-.-+...+.. +. ..+...|+. ++.+..+...... .. .+-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 77778888888887766554422223332222 21 224455632 2223333332221 10 112234444
Q ss_pred HHHHHHhcCCHHHHHHHH----HHHhcCCCCCCHH--HHHHHHHHHhccCCcccHHHHHHHHHHHHHCCC----CCCHHH
Q 011137 388 LIRYFCDAGEIERGLELF----EKMGSGVCLPNLD--TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF----MPRKFT 457 (493)
Q Consensus 388 l~~~~~~~g~~~~a~~~~----~~~~~~~~~p~~~--~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~----~p~~~~ 457 (493)
+..++.+ ++.+..-. +--......|-.. .+..|+......|+.++ |...+.++..... .++-.+
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~---A~~~l~~~~~l~~~~~~~~~~~a 659 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDK---ALAQLDELERLLLNGQYHVDYLA 659 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHHhcCCCCCchHHH
Confidence 5555544 33333222 2222211111111 12256677777888888 8888887775422 233333
Q ss_pred HHHHHH--HHHHcCCHHHHHHHHHH
Q 011137 458 FNRVLN--GLLLIGNQGLAKEILRL 480 (493)
Q Consensus 458 ~~~l~~--~~~~~g~~~~a~~~~~~ 480 (493)
-...++ .-...|+.+.+...+..
T Consensus 660 ~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 660 AAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHhhHHHhcccCCHHHHHHHHHh
Confidence 333333 23447777777666544
No 327
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.21 E-value=0.53 Score=37.23 Aligned_cols=83 Identities=12% Similarity=0.172 Sum_probs=46.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 011137 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362 (493)
Q Consensus 283 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 362 (493)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++...+++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4555566666666666666666555445566667777777777666666665551 111223345555555565
Q ss_pred HHHHHHHHHH
Q 011137 363 MERALEFVGR 372 (493)
Q Consensus 363 ~~~a~~~~~~ 372 (493)
++++.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555554444
No 328
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=84.00 E-value=40 Score=32.15 Aligned_cols=115 Identities=11% Similarity=0.097 Sum_probs=78.3
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011137 86 ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165 (493)
Q Consensus 86 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 165 (493)
.-++|+.++.+++. +.........+...|+++.+...+...... +.....+...+++.....|+++.|..+-+-|.
T Consensus 309 s~~~~~~lr~~~~~---p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l 384 (831)
T PRK15180 309 SQQLFAALRNQQQD---PVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMML 384 (831)
T ss_pred HHHHHHHHHhCCCC---chhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 34577777777664 344444445567889999998888776543 33567788889999999999999999988888
Q ss_pred hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCC
Q 011137 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA 205 (493)
Q Consensus 166 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 205 (493)
...++ +..+........-..|-++++.-.++++....+|
T Consensus 385 ~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 385 SNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred ccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 66543 3343333333334456788888888877544333
No 329
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.54 E-value=20 Score=28.25 Aligned_cols=51 Identities=10% Similarity=-0.074 Sum_probs=22.0
Q ss_pred cCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011137 186 EKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236 (493)
Q Consensus 186 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 236 (493)
.++.+++..+++.+.---|.....-..-...+...|++++|..+|++..+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 445555555555443322212222122222334455555555555555544
No 330
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.53 E-value=3.2 Score=22.72 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 383 QTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 383 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
.+|..+...|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3566677777778888888888777665
No 331
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=83.51 E-value=19 Score=31.70 Aligned_cols=89 Identities=9% Similarity=0.052 Sum_probs=56.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh---
Q 011137 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG--- 288 (493)
Q Consensus 212 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--- 288 (493)
.=|.+++..+++.+++.+.-+..+.--+.........|-.|.|.|+...+.++-....+..-.-+..-|.++++.|.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 34777888888888877766665432223345556666777788888877777777666533333444666665553
Q ss_pred --ccCCHHHHHHHH
Q 011137 289 --VVGEIKRARNVF 300 (493)
Q Consensus 289 --~~g~~~~A~~~~ 300 (493)
=.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 357777777666
No 332
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.40 E-value=32 Score=30.53 Aligned_cols=71 Identities=13% Similarity=0.163 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 011137 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN-----GGVLPSVATY 315 (493)
Q Consensus 244 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~ 315 (493)
+++...+.|..+|.+.+|.++.+.....+ +.+...+-.++..+...||--.|.+-++.+.+ .|+..+...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 45667788999999999999999998874 45888999999999999998777777776643 3665554443
No 333
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.05 E-value=12 Score=31.62 Aligned_cols=76 Identities=13% Similarity=0.127 Sum_probs=54.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHH
Q 011137 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK--GYMPNSTTYNVVIRG 356 (493)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~ 356 (493)
.+..++.+.+.+.+.+++...++-++.+. -|..+-..+++.||-.|+|++|..-++-.-.. ...+...+|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44556677788889999988888777543 35666777889999999999998877765544 223345567776654
No 334
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=82.78 E-value=64 Score=33.54 Aligned_cols=224 Identities=10% Similarity=0.082 Sum_probs=116.4
Q ss_pred HccCCHHHHHHHHHHhhcCCCC-Cc-------chHHHHHH-HHHhcCChhHHHHHHHHHHhC----CCCCCHHHHHHHHH
Q 011137 184 CKEKKVEKAYNLFKVFRGKFKA-DV-------ISYNVIAN-GWCLVKRTNKALEVLKEMVDR----GLNPNLTTYNIVLK 250 (493)
Q Consensus 184 ~~~g~~~~A~~~~~~~~~~~~~-~~-------~~~~~l~~-~~~~~~~~~~A~~~~~~m~~~----g~~p~~~~~~~l~~ 250 (493)
....++.+|..++.++....++ +. ..|+.+-. .....|++++|+++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3467788888888776543222 11 13444322 234478888988888776543 23345566777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-----HHHhccCCH--HHHHHHHHHHHHC--CCC----CCHHHHHH
Q 011137 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV-----HGFGVVGEI--KRARNVFDGMVNG--GVL----PSVATYNA 317 (493)
Q Consensus 251 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-----~~~~~~g~~--~~A~~~~~~~~~~--~~~----~~~~~~~~ 317 (493)
+..-.|++++|..+..+..+..-.-+...+.... ..+...|+. .+.+..|...... .-. +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888899999988887766653222333333222 234556632 2333333333221 011 11233444
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHhhhCCCC----CCHHHHHHHHH
Q 011137 318 MIQVLCKK-DSVENAILVFEEMVGKGYMPNSTT--YNVVIRGLCHTGEMERALEFVGRMKDDECE----PNVQTYNILIR 390 (493)
Q Consensus 318 li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~ 390 (493)
+..++.+. +...++..-+..-......|-... +..++......|+.++|...+.++...... ++...-...+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 44444441 112222222222222222222222 235667777889999999888887664222 22222222222
Q ss_pred --HHHhcCCHHHHHHHHHH
Q 011137 391 --YFCDAGEIERGLELFEK 407 (493)
Q Consensus 391 --~~~~~g~~~~a~~~~~~ 407 (493)
.....|+.+++.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 22356787777766655
No 335
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.75 E-value=4.6 Score=21.96 Aligned_cols=29 Identities=14% Similarity=0.026 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011137 456 FTFNRVLNGLLLIGNQGLAKEILRLQSRC 484 (493)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 484 (493)
..+..+...+...|++++|++.++...+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35667777888899999999988877664
No 336
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.73 E-value=2.8 Score=25.06 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=21.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 011137 460 RVLNGLLLIGNQGLAKEILRLQSRCGR 486 (493)
Q Consensus 460 ~l~~~~~~~g~~~~a~~~~~~~~~~g~ 486 (493)
.+..+|...|+.+.|+++++.....|-
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 466788888888888888887776554
No 337
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.32 E-value=50 Score=31.95 Aligned_cols=179 Identities=12% Similarity=0.093 Sum_probs=89.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 011137 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIAN 215 (493)
Q Consensus 136 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 215 (493)
.|.....+++..+..+..++-...+..+|...| .+-..|..++++|... .-++-..+++++.+-.-.|++.-..|..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 344555556666666666666666666666654 3445566666666665 3444555555554433334444444444
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCC--C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc
Q 011137 216 GWCLVKRTNKALEVLKEMVDRGLNP--N---LTTYNIVLKGYFRAGQIEEAWRFFLEMKKR-KCEIDVVTYTTIVHGFGV 289 (493)
Q Consensus 216 ~~~~~~~~~~A~~~~~~m~~~g~~p--~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~ 289 (493)
.|-+ ++.+.+..+|.++..+-+.- + ...|..+...- ..+.+....+...+... |...-...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4443 56666666666655432110 0 11222222211 23445555555555433 333334445555555666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011137 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321 (493)
Q Consensus 290 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 321 (493)
..++++|++++..+.+.+-+ |..+-..++.-
T Consensus 218 ~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~ 248 (711)
T COG1747 218 NENWTEAIRILKHILEHDEK-DVWARKEIIEN 248 (711)
T ss_pred ccCHHHHHHHHHHHhhhcch-hhhHHHHHHHH
Confidence 66666666666666554322 44444444443
No 338
>PRK09687 putative lyase; Provisional
Probab=82.29 E-value=37 Score=30.46 Aligned_cols=202 Identities=12% Similarity=0.031 Sum_probs=110.4
Q ss_pred CHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-----HHHHHHHHHHHHHCCCCCC
Q 011137 241 NLTTYNIVLKGYFRAGQI----EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE-----IKRARNVFDGMVNGGVLPS 311 (493)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----~~~A~~~~~~~~~~~~~~~ 311 (493)
|...-...+.++...|+. +++...+..+... .++..+-...+.++...+. ...+...+...... ++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFD---KS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhC---CC
Confidence 334444445555555542 3455555544332 2344444444444444332 12233333333332 35
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 011137 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG-EMERALEFVGRMKDDECEPNVQTYNILIR 390 (493)
Q Consensus 312 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 390 (493)
..+-...+.++.+.++ +.+...+-.+.+. ++...-...+.++.+.+ +...+...+..+.. .++..+-...+.
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~ 214 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAII 214 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHH
Confidence 5555666777777766 4566666666653 34455555555665543 23456666666664 346667777788
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011137 391 YFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466 (493)
Q Consensus 391 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 466 (493)
++.+.|+. .+...+-+..+.+ + .....+.++...|.. + |...+.++.+. .||..+-...+.+|.
T Consensus 215 aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~---a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 215 GLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-T---LLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-h---HHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 88888874 5555555555532 2 234566666666664 3 78888888764 457776666666553
No 339
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=81.16 E-value=50 Score=31.25 Aligned_cols=74 Identities=19% Similarity=0.238 Sum_probs=47.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011137 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465 (493)
Q Consensus 386 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 465 (493)
..|+.-|.-.|++.+|...++++.-- +--....+.+++.+.-+.|+... .++++++.-+.|+ +|.+.+-++|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~---~ldLLk~cf~sgl----IT~nQMtkGf 584 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTM---ILDLLKECFKSGL----ITTNQMTKGF 584 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHH---HHHHHHHHHhcCc----eeHHHhhhhh
Confidence 45677777788888888887776431 11245677778877777777665 6677777666553 3344444444
Q ss_pred HH
Q 011137 466 LL 467 (493)
Q Consensus 466 ~~ 467 (493)
.+
T Consensus 585 ~R 586 (645)
T KOG0403|consen 585 ER 586 (645)
T ss_pred hh
Confidence 44
No 340
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=80.85 E-value=5.7 Score=35.72 Aligned_cols=90 Identities=10% Similarity=-0.026 Sum_probs=55.9
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 011137 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364 (493)
Q Consensus 285 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 364 (493)
+-|.+.|.+++|+++|...+... +.+..++..-..+|.+...+..|+.=....+..+-. -...|..-+.+-...|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhhHH
Confidence 45888999999999998877642 227788888888888888888777666655543100 1122333333333345555
Q ss_pred HHHHHHHHhhhC
Q 011137 365 RALEFVGRMKDD 376 (493)
Q Consensus 365 ~a~~~~~~~~~~ 376 (493)
+|.+-++..+..
T Consensus 183 EAKkD~E~vL~L 194 (536)
T KOG4648|consen 183 EAKKDCETVLAL 194 (536)
T ss_pred HHHHhHHHHHhh
Confidence 555555555543
No 341
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=80.64 E-value=1.3e+02 Score=35.49 Aligned_cols=320 Identities=10% Similarity=0.032 Sum_probs=157.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCC-CHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 011137 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGP-TQKTFAII-AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185 (493)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 185 (493)
.+..+=.+.+.+.+|...++.-.....+- -...+..+ ...|..-+++|...-+...-. .+...++ -|-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~~-qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLYQ-QILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHHH-HHHHHHh
Confidence 33345556778888888888742211111 12233333 447888888888777765411 1222233 3334566
Q ss_pred cCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHH
Q 011137 186 EKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN-IVLKGYFRAGQIEEAWRF 264 (493)
Q Consensus 186 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~-~l~~~~~~~g~~~~a~~~ 264 (493)
.|++..|...|+.+.+..++...+++-++......|.++.+.-..+-.... ..+....++ .-+.+--+.++++.....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 788888888888888877777778888877777777777776655554433 122222222 233444667777777666
Q ss_pred HHHHHHCCCCCCHHHHHHH--HHHHhc--cCCHHHHHHHHHHHHHC--------CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 011137 265 FLEMKKRKCEIDVVTYTTI--VHGFGV--VGEIKRARNVFDGMVNG--------GVLPS-VATYNAMIQVLCKKDSVENA 331 (493)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~l--i~~~~~--~g~~~~A~~~~~~~~~~--------~~~~~-~~~~~~li~~~~~~~~~~~a 331 (493)
.. .. +..+|... .....+ ..|.-.-.+..+.+.+. +..-+ ...|..++....-..-....
T Consensus 1541 l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~ 1613 (2382)
T KOG0890|consen 1541 LS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSI 1613 (2382)
T ss_pred hh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 55 22 22222222 222211 11211111222222211 11100 12333333322211111111
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHH---HHHhcCCHHHHHHHHHHhhhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHH
Q 011137 332 ILVFEEMVGKGYMPNSTTYNVVIR---GLCHTGEMERALEFVGRMKDD----EC-EPNVQTYNILIRYFCDAGEIERGLE 403 (493)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~li~---~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~ 403 (493)
..+...-.......+..-|..-+. .+.+..++= +.+-+.+... +. .--..+|-...+...+.|+++.|..
T Consensus 1614 ~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epI--La~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1614 EELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPI--LAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHhhccCccccccccchhHHHHHHHhchhHHHHhHH--HHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 111000000000111111211111 122211111 1111111111 11 1124578888888888999999988
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHC
Q 011137 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449 (493)
Q Consensus 404 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~ 449 (493)
.+-...+.+ -+..+-....-....|+... |+.++++-.+.
T Consensus 1692 all~A~e~r---~~~i~~E~AK~lW~~gd~~~---Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1692 ALLNAKESR---LPEIVLERAKLLWQTGDELN---ALSVLQEILSK 1731 (2382)
T ss_pred HHHhhhhcc---cchHHHHHHHHHHhhccHHH---HHHHHHHHHHh
Confidence 777776654 33455566667778888888 99999998865
No 342
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=80.54 E-value=24 Score=28.86 Aligned_cols=40 Identities=30% Similarity=0.364 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011137 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271 (493)
Q Consensus 224 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 271 (493)
++|...|++..+ ..|+..+|+.-+.... +|-+++.++.+.
T Consensus 97 ~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 97 EKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred HHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 334444444443 2456666665555542 344555555444
No 343
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.30 E-value=5.1 Score=21.87 Aligned_cols=27 Identities=15% Similarity=0.347 Sum_probs=14.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011137 279 TYTTIVHGFGVVGEIKRARNVFDGMVN 305 (493)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 305 (493)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555555555555555555443
No 344
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=80.10 E-value=7 Score=35.19 Aligned_cols=46 Identities=15% Similarity=0.086 Sum_probs=22.7
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 011137 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN 194 (493)
Q Consensus 148 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 194 (493)
|.++|.+++|+..|....... +.+.+.+..-..+|.+...+..|+.
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~ 152 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEE 152 (536)
T ss_pred hhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHH
Confidence 555555555555555444322 2244445444555555555554443
No 345
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.83 E-value=4.5 Score=24.18 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=12.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhc
Q 011137 388 LIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 388 l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
|..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44555555555555555555554
No 346
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.42 E-value=29 Score=27.39 Aligned_cols=19 Identities=11% Similarity=0.207 Sum_probs=9.2
Q ss_pred HHccCCHHHHHHHHHHhhc
Q 011137 183 LCKEKKVEKAYNLFKVFRG 201 (493)
Q Consensus 183 ~~~~g~~~~A~~~~~~~~~ 201 (493)
+...|++++|.++|+.+.+
T Consensus 54 ~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 54 LIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHcCCHHHHHHHHHhhhc
Confidence 3444555555555554443
No 347
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.39 E-value=35 Score=28.35 Aligned_cols=89 Identities=9% Similarity=0.132 Sum_probs=54.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH-----HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 011137 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN-----VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393 (493)
Q Consensus 319 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 393 (493)
...+...+++++|...++..... |....+. .|.+.....|.+++|+..+......+. .......-.+.+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 44566777777777777766644 1222222 234456667777777777776665432 2223344556677
Q ss_pred hcCCHHHHHHHHHHHhcCC
Q 011137 394 DAGEIERGLELFEKMGSGV 412 (493)
Q Consensus 394 ~~g~~~~a~~~~~~~~~~~ 412 (493)
..|+-++|+.-|++..+.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 7777777777777777653
No 348
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.29 E-value=21 Score=25.81 Aligned_cols=80 Identities=11% Similarity=0.085 Sum_probs=49.1
Q ss_pred hChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011137 81 NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160 (493)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 160 (493)
+..++|..+-+|+...+.. ...+--.-+..+.+.|++++|..+.+.+ ..||...|..+.. .+.|..+++..-
T Consensus 19 HcHqEA~tIAdwL~~~~~~--~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~r 90 (115)
T TIGR02508 19 HCHQEANTIADWLHLKGES--EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESR 90 (115)
T ss_pred hHHHHHHHHHHHHhcCCch--HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHH
Confidence 4567788888888665421 1112222244667778888887777665 3477777766554 456666666666
Q ss_pred HHHHHhCC
Q 011137 161 FLSMHEHG 168 (493)
Q Consensus 161 ~~~~~~~~ 168 (493)
+..+...|
T Consensus 91 l~rla~sg 98 (115)
T TIGR02508 91 LNRLAASG 98 (115)
T ss_pred HHHHHhCC
Confidence 66666655
No 349
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.12 E-value=80 Score=32.33 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=12.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 011137 248 VLKGYFRAGQIEEAWRFFLEMK 269 (493)
Q Consensus 248 l~~~~~~~g~~~~a~~~~~~~~ 269 (493)
|+..|...+++..|.+++-...
T Consensus 511 La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHccChHHHHHHHHhcc
Confidence 5555556666666665554443
No 350
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=78.78 E-value=54 Score=30.16 Aligned_cols=118 Identities=9% Similarity=0.086 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---cCCHHHHHHHH
Q 011137 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV---VGEIKRARNVF 300 (493)
Q Consensus 224 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~ 300 (493)
+.-+.+++++.+.+. -+.......+..+.+..+.++..+.++++...... +...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 344556666665533 24555566666666666667767777776665322 55556555554433 22344555554
Q ss_pred HHHHHC------CC----CCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011137 301 DGMVNG------GV----LPSVA-------TYNAMIQVLCKKDSVENAILVFEEMVGKGY 343 (493)
Q Consensus 301 ~~~~~~------~~----~~~~~-------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 343 (493)
.+.... +. .+... .+..+...+...|..+.|..+++.+.+.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 443321 10 00111 122222233457777777777777776654
No 351
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.69 E-value=3.3 Score=21.28 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=10.3
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 011137 387 ILIRYFCDAGEIERGLELFE 406 (493)
Q Consensus 387 ~l~~~~~~~g~~~~a~~~~~ 406 (493)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34455555555555555443
No 352
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.12 E-value=3 Score=22.56 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=7.7
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 011137 147 RYVSAGKADRAVKIFLSMH 165 (493)
Q Consensus 147 ~~~~~g~~~~a~~~~~~~~ 165 (493)
++.+.|++++|.+.|+++.
T Consensus 9 ~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHH
Confidence 3333444444444444333
No 353
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.91 E-value=98 Score=32.69 Aligned_cols=116 Identities=14% Similarity=0.176 Sum_probs=57.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCC--CC-CCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCCCHHHHHH-
Q 011137 209 SYNVIANGWCLVKRTNKALEVLKEMVDRG--LN-PNLTTYNIVLKGYFRAGQI--EEAWRFFLEMKKRKCEIDVVTYTT- 282 (493)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g--~~-p~~~~~~~l~~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~- 282 (493)
-|..|+..|...|+.++|+++|.+..+.. .. --...+..+++.+.+.+.. +-.+++-+-..+.........+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 47788888888888888888888887632 00 0112233344444444433 334443333333321111111111
Q ss_pred -----------HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 011137 283 -----------IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324 (493)
Q Consensus 283 -----------li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 324 (493)
-+-.|......+-+..+++.+....-.++....+.++..|+.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 122344445555566666666555444455555555555543
No 354
>PRK13342 recombination factor protein RarA; Reviewed
Probab=77.54 E-value=69 Score=30.74 Aligned_cols=31 Identities=6% Similarity=0.082 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011137 256 GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286 (493)
Q Consensus 256 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 286 (493)
++.+.|+.++..|.+.|..|....-..++.+
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4445555555555554444443333333333
No 355
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=77.46 E-value=5.3 Score=21.48 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=20.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011137 458 FNRVLNGLLLIGNQGLAKEILRLQSRC 484 (493)
Q Consensus 458 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 484 (493)
+..+..++.+.|++++|.+.++.+.+.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345666788889999999999877654
No 356
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=77.23 E-value=53 Score=29.26 Aligned_cols=57 Identities=9% Similarity=0.167 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHH
Q 011137 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGK-GYMPNSTTYNVVIRGLCHTGEMERAL 367 (493)
Q Consensus 311 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~ 367 (493)
+..+...++..+++.++|.+-.++++..... +..-|...|..+|......|+..-..
T Consensus 201 ~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ 258 (292)
T PF13929_consen 201 TRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMR 258 (292)
T ss_pred ChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHH
Confidence 3334444444444444444444444443333 23334444444444444444443333
No 357
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=77.12 E-value=62 Score=30.00 Aligned_cols=67 Identities=12% Similarity=-0.017 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 011137 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI---DVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306 (493)
Q Consensus 240 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 306 (493)
....++..++..+.+.|.++.|...+..+...+... .+.....-+......|+..+|+..+++..+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345678889999999999999999999988754221 3445555677788889999999999988873
No 358
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=76.71 E-value=14 Score=27.99 Aligned_cols=46 Identities=15% Similarity=0.191 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 121 TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE 166 (493)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 166 (493)
+..+-+..+....+.|++......++++.+.+++..|+.+|+-++.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4444555555566667777777777777777777777777776654
No 359
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=76.09 E-value=56 Score=28.96 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=11.3
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 011137 317 AMIQVLCKKDSVENAILVFE 336 (493)
Q Consensus 317 ~li~~~~~~~~~~~a~~~~~ 336 (493)
.++..+.+.|.+.+|+.+..
T Consensus 130 Kli~l~y~~~~YsdalalIn 149 (421)
T COG5159 130 KLIYLLYKTGKYSDALALIN 149 (421)
T ss_pred HHHHHHHhcccHHHHHHHHH
Confidence 34555566666666655543
No 360
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.75 E-value=51 Score=28.33 Aligned_cols=29 Identities=10% Similarity=0.198 Sum_probs=18.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 011137 353 VIRGLCHTGEMERALEFVGRMKDDECEPN 381 (493)
Q Consensus 353 li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 381 (493)
+...-...+++.+|+++|+++....+..+
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 33344556778888888887776644433
No 361
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=75.73 E-value=20 Score=30.05 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011137 452 MPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482 (493)
Q Consensus 452 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 482 (493)
.|+..+|..++.++...|+.++|.+..+.+.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555555555555555555554443
No 362
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.18 E-value=8.2 Score=26.44 Aligned_cols=40 Identities=5% Similarity=-0.106 Sum_probs=26.5
Q ss_pred HHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHH
Q 011137 439 AGKLLIEMVDRGFMPR--KFTFNRVLNGLLLIGNQGLAKEIL 478 (493)
Q Consensus 439 A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~ 478 (493)
|+..|...+++-..+. ..++..++.+++..|++++++++.
T Consensus 25 Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 25 ALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777776532322 345666777888888887776654
No 363
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.58 E-value=1.2e+02 Score=32.07 Aligned_cols=114 Identities=10% Similarity=0.118 Sum_probs=72.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhcCCC-CCc---chHHHHHHHHHhcCCh--hHHHHHHHHHHhCCCCCCHHHHH---
Q 011137 176 FNTILDLLCKEKKVEKAYNLFKVFRGKFK-ADV---ISYNVIANGWCLVKRT--NKALEVLKEMVDRGLNPNLTTYN--- 246 (493)
Q Consensus 176 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~---~~~~~l~~~~~~~~~~--~~A~~~~~~m~~~g~~p~~~~~~--- 246 (493)
|..|+..|...|+.++|++++.....+.. .|. ..+..++..+.+.+.. +-++++-+...+....-....+.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 67889999999999999999998876431 111 2244455555555555 55555555554432211111111
Q ss_pred ---------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 011137 247 ---------IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289 (493)
Q Consensus 247 ---------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 289 (493)
..+-.|......+-+..+++.+....-..+....+.++..|..
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1233455667778888899988887666678888888887754
No 364
>PHA02875 ankyrin repeat protein; Provisional
Probab=74.47 E-value=83 Score=30.12 Aligned_cols=76 Identities=9% Similarity=0.107 Sum_probs=33.8
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCcc--hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCH
Q 011137 183 LCKEKKVEKAYNLFKVFRGKFKADVI--SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT--TYNIVLKGYFRAGQI 258 (493)
Q Consensus 183 ~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~g~~ 258 (493)
.+..|+.+.+..+++. +..++.. ...+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+.
T Consensus 9 A~~~g~~~iv~~Ll~~---g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 9 AILFGELDIARRLLDI---GINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHHhCCHHHHHHHHHC---CCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 3455666666555542 2222221 1223333444555553 334444455444332 112334445556666
Q ss_pred HHHHHHH
Q 011137 259 EEAWRFF 265 (493)
Q Consensus 259 ~~a~~~~ 265 (493)
+.+..++
T Consensus 82 ~~v~~Ll 88 (413)
T PHA02875 82 KAVEELL 88 (413)
T ss_pred HHHHHHH
Confidence 5554444
No 365
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=73.81 E-value=27 Score=28.61 Aligned_cols=71 Identities=15% Similarity=0.197 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC----C-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 011137 226 ALEVLKEMVDRGLNPN-LTTYNIVLKGYFRAG----Q-------IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293 (493)
Q Consensus 226 A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g----~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 293 (493)
|+.-|++.+.. .|+ ..++..+..+|...+ + +++|...|+..... .|+..+|..-+....
T Consensus 54 AisK~eeAL~I--~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~----- 124 (186)
T PF06552_consen 54 AISKFEEALKI--NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA----- 124 (186)
T ss_dssp HHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH-----
T ss_pred HHHHHHHHHhc--CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH-----
Confidence 33444444433 333 245555555555433 2 23333444444332 455566665555442
Q ss_pred HHHHHHHHHHHHC
Q 011137 294 KRARNVFDGMVNG 306 (493)
Q Consensus 294 ~~A~~~~~~~~~~ 306 (493)
+|-++..++.+.
T Consensus 125 -kap~lh~e~~~~ 136 (186)
T PF06552_consen 125 -KAPELHMEIHKQ 136 (186)
T ss_dssp -THHHHHHHHHHS
T ss_pred -hhHHHHHHHHHH
Confidence 344444444443
No 366
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=73.36 E-value=38 Score=25.76 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=19.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011137 441 KLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479 (493)
Q Consensus 441 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 479 (493)
+-++.....++.|+.......+++|.+.+|+..|.++|+
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE 108 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILE 108 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHH
Confidence 334444444445555555555555555555555555554
No 367
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.20 E-value=53 Score=27.34 Aligned_cols=90 Identities=11% Similarity=0.086 Sum_probs=41.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 011137 215 NGWCLVKRTNKALEVLKEMVDRGLNPN--LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292 (493)
Q Consensus 215 ~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 292 (493)
..+...+++++|+.-++.....-..-+ ..+--.|.+.....|.+|+|+..++.....+. .......-.+.+...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCc
Confidence 344455555555555555443211000 11112234445555666666666655544322 12222333445555666
Q ss_pred HHHHHHHHHHHHHC
Q 011137 293 IKRARNVFDGMVNG 306 (493)
Q Consensus 293 ~~~A~~~~~~~~~~ 306 (493)
-++|+.-|++..+.
T Consensus 175 k~~Ar~ay~kAl~~ 188 (207)
T COG2976 175 KQEARAAYEKALES 188 (207)
T ss_pred hHHHHHHHHHHHHc
Confidence 66666666655554
No 368
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.93 E-value=61 Score=27.90 Aligned_cols=62 Identities=11% Similarity=0.127 Sum_probs=32.8
Q ss_pred HHHHHhcc-CCHHHHHHHHHHHHHC--CCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011137 283 IVHGFGVV-GEIKRARNVFDGMVNG--GVLPSVA---TYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344 (493)
Q Consensus 283 li~~~~~~-g~~~~A~~~~~~~~~~--~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 344 (493)
+...|-.. .++++|+..|++.-+- |-..+.. .+.-+...-...+++.+|+.+|++.......
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33344333 4566666666665431 1111222 2222333345677888899998888766444
No 369
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=71.72 E-value=64 Score=27.86 Aligned_cols=82 Identities=12% Similarity=-0.028 Sum_probs=41.8
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHH
Q 011137 150 SAGKADRAVKIFLSMHEHGCRQSL-NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALE 228 (493)
Q Consensus 150 ~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 228 (493)
....++.|+..|.+.+.. .|+. ..|..-+.++.+..+++.+..--.+..+-.+-.+.....+..+......+++|+.
T Consensus 22 ~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred chhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHH
Confidence 344555666655554443 3443 3445555556666666555544333333222233344455555555666666666
Q ss_pred HHHHH
Q 011137 229 VLKEM 233 (493)
Q Consensus 229 ~~~~m 233 (493)
.+.+.
T Consensus 100 ~Lqra 104 (284)
T KOG4642|consen 100 VLQRA 104 (284)
T ss_pred HHHHH
Confidence 66665
No 370
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=71.37 E-value=38 Score=24.92 Aligned_cols=78 Identities=10% Similarity=-0.004 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 011137 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232 (493)
Q Consensus 153 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 232 (493)
..++|..+.+.+...+. ....+--.-+..+...|++++| +..-.....||...|.+|... +.|-.+++...+.+
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~~~pdL~p~~AL~a~--klGL~~~~e~~l~r 94 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQCHCYPDLEPWAALCAW--KLGLASALESRLTR 94 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHTTS--GGGHHHHHHHHH--HCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhcccCCCccHHHHHHHHHH--hhccHHHHHHHHHH
Confidence 45555555555555432 1112222223345556666665 222222344555555444332 45555555555555
Q ss_pred HHhC
Q 011137 233 MVDR 236 (493)
Q Consensus 233 m~~~ 236 (493)
+..+
T Consensus 95 la~~ 98 (116)
T PF09477_consen 95 LASS 98 (116)
T ss_dssp HCT-
T ss_pred HHhC
Confidence 5444
No 371
>PHA02875 ankyrin repeat protein; Provisional
Probab=70.83 E-value=1e+02 Score=29.54 Aligned_cols=208 Identities=13% Similarity=0.112 Sum_probs=85.5
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHccCC
Q 011137 113 AARLRDYRTVWTLVHRMKSLSLGPTQKT--FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN--SFNTILDLLCKEKK 188 (493)
Q Consensus 113 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~ 188 (493)
..+.|+.+.+..++ +.|..++... -...+...+..|+.+-+ +.+.+.|..++.. .....+...+..|+
T Consensus 9 A~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 34455554443333 3444443321 12233444455665433 3333444333321 11223445556777
Q ss_pred HHHHHHHHHHhhcCC-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHH
Q 011137 189 VEKAYNLFKVFRGKF-KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT--YNIVLKGYFRAGQIEEAWRFF 265 (493)
Q Consensus 189 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~--~~~l~~~~~~~g~~~~a~~~~ 265 (493)
.+.+..+++.-.... ..+..-. +.+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+-+..++
T Consensus 81 ~~~v~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll 155 (413)
T PHA02875 81 VKAVEELLDLGKFADDVFYKDGM-TPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI 155 (413)
T ss_pred HHHHHHHHHcCCcccccccCCCC-CHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 776665554321110 0011111 222333345554 34444555565544321 122344445666665544443
Q ss_pred HHHHHCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHH
Q 011137 266 LEMKKRKCEID---VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT---YNAMIQVLCKKDSVENAILVFEEMV 339 (493)
Q Consensus 266 ~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~ 339 (493)
+.|..++ ..-.+ .+...+..|+.+ +.+.+.+.|..++... ...++...+..|+.+ +.+.+.
T Consensus 156 ----~~g~~~~~~d~~g~T-pL~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll 222 (413)
T PHA02875 156 ----DHKACLDIEDCCGCT-PLIIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFI 222 (413)
T ss_pred ----hcCCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHH
Confidence 3333222 11122 233334456544 3344455555444321 123333334555554 334444
Q ss_pred hCCCCCC
Q 011137 340 GKGYMPN 346 (493)
Q Consensus 340 ~~~~~~~ 346 (493)
+.|..++
T Consensus 223 ~~gad~n 229 (413)
T PHA02875 223 KRGADCN 229 (413)
T ss_pred HCCcCcc
Confidence 5555554
No 372
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.47 E-value=1e+02 Score=29.01 Aligned_cols=63 Identities=6% Similarity=0.044 Sum_probs=40.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011137 209 SYNVIANGWCLVKRTNKALEVLKEMVDRG--LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271 (493)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 271 (493)
.+.-+...|..+|+++.|++.|.+..+-- .+-.+..|..+|....-.|+|.....+..+..+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 56777778888888888888887754321 1112344555666666677777777776666554
No 373
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=69.24 E-value=20 Score=34.99 Aligned_cols=85 Identities=13% Similarity=-0.009 Sum_probs=40.4
Q ss_pred cCCHHHHHHHHHHhhc-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011137 186 EKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF 264 (493)
Q Consensus 186 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 264 (493)
.|+...|...+..... ......+....|.+...+.|....|-.++.+..... ....-++..+.+++....+++.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 3555555544443221 111122333444455555555555555555544433 11334445555555555666666666
Q ss_pred HHHHHHC
Q 011137 265 FLEMKKR 271 (493)
Q Consensus 265 ~~~~~~~ 271 (493)
|++..+.
T Consensus 699 ~~~a~~~ 705 (886)
T KOG4507|consen 699 FRQALKL 705 (886)
T ss_pred HHHHHhc
Confidence 6555554
No 374
>PRK11619 lytic murein transglycosylase; Provisional
Probab=68.84 E-value=1.4e+02 Score=30.57 Aligned_cols=97 Identities=13% Similarity=0.122 Sum_probs=59.5
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 011137 88 HFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH 167 (493)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 167 (493)
++-..+...++.|.....=...+..+.+.+++.....++.. .+.+...-.....+....|+.++|....+.+=..
T Consensus 84 ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~ 158 (644)
T PRK11619 84 QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLT 158 (644)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 44444556666665566666666677777788777663311 2345555566677777788877776666665444
Q ss_pred CCCCCHHHHHHHHHHHHccCCHH
Q 011137 168 GCRQSLNSFNTILDLLCKEKKVE 190 (493)
Q Consensus 168 ~~~~~~~~~~~ll~~~~~~g~~~ 190 (493)
| ......++.++..+.+.|.+.
T Consensus 159 g-~~~p~~cd~l~~~~~~~g~lt 180 (644)
T PRK11619 159 G-KSLPNACDKLFSVWQQSGKQD 180 (644)
T ss_pred C-CCCChHHHHHHHHHHHcCCCC
Confidence 4 234556677777766555443
No 375
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=68.56 E-value=27 Score=35.14 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=0.0
Q ss_pred CCcccHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011137 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461 (493)
Q Consensus 431 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 461 (493)
|++.+ |.+.+-.+.+.++.|...-..-|
T Consensus 509 ~~~~~---Aa~~Lv~Ll~~~~~Pk~f~~~LL 536 (566)
T PF07575_consen 509 GDFRE---AASLLVSLLKSPIAPKSFWPLLL 536 (566)
T ss_dssp -------------------------------
T ss_pred hhHHH---HHHHHHHHHCCCCCcHHHHHHHH
Confidence 44444 55555555555555554443333
No 376
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=67.56 E-value=81 Score=27.20 Aligned_cols=37 Identities=14% Similarity=0.189 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 011137 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416 (493)
Q Consensus 379 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 416 (493)
.|.+.....++..| ..+++++|.+++.++-+.|+.|.
T Consensus 236 ~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 236 EPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred CCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHH
Confidence 45555555565554 34677777777777777776654
No 377
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.52 E-value=23 Score=24.40 Aligned_cols=19 Identities=11% Similarity=0.211 Sum_probs=8.4
Q ss_pred HHHHHHHHHhcCCHHHHHH
Q 011137 245 YNIVLKGYFRAGQIEEAWR 263 (493)
Q Consensus 245 ~~~l~~~~~~~g~~~~a~~ 263 (493)
+..++.+|+..|++.++++
T Consensus 46 lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 46 LGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 378
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=67.50 E-value=95 Score=27.94 Aligned_cols=150 Identities=9% Similarity=0.102 Sum_probs=75.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh----ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 011137 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG----VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK----K 325 (493)
Q Consensus 254 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 325 (493)
..+++..+...+......+. ......+...|. ...+..+|.+.|....+.|.. .....|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcCC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcc
Confidence 45667777777777766432 233333444432 334567777777766665432 223334444443 3
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-------CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh----
Q 011137 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG-------EMERALEFVGRMKDDECEPNVQTYNILIRYFCD---- 394 (493)
Q Consensus 326 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 394 (493)
.+..+|...++...+.|..+.......+...|..-. +...|...+.++-..+ +......+...|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 366677777777766664432222333333333221 1224555665555554 33333344444422
Q ss_pred cCCHHHHHHHHHHHhcCC
Q 011137 395 AGEIERGLELFEKMGSGV 412 (493)
Q Consensus 395 ~g~~~~a~~~~~~~~~~~ 412 (493)
..+.++|...|++..+.|
T Consensus 204 ~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred CcCHHHHHHHHHHHHHCC
Confidence 225556666666665554
No 379
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.44 E-value=88 Score=27.53 Aligned_cols=250 Identities=11% Similarity=0.106 Sum_probs=128.8
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHccC
Q 011137 116 LRDYRTVWTLVHRMKSLSLGPTQK---TFAIIAERYVSAGKADRAVKIFLSMHEH-----GCRQSLNSFNTILDLLCKEK 187 (493)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~g 187 (493)
...+++|+.-|++..+....-..+ ++..++..+.+.|++++..+.|.++... ...-+..+.|++++-...+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 346667777777766544333333 3444667777777777777777766521 11234455677776666666
Q ss_pred CHHHHHHHHHHhhcC--CCCCc----chHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-----------CCHHHHHHHHH
Q 011137 188 KVEKAYNLFKVFRGK--FKADV----ISYNVIANGWCLVKRTNKALEVLKEMVDRGLN-----------PNLTTYNIVLK 250 (493)
Q Consensus 188 ~~~~A~~~~~~~~~~--~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-----------p~~~~~~~l~~ 250 (493)
+.+.....++.-... ...+. .|-..|...|...+++.+..++++++...-.. .-...|..-|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 655555544432110 00111 13346677777888888888888777542110 01245666677
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHH-----HhccCCHHHHHHHHHHHHH----CCCCCCHH--HHHHH
Q 011137 251 GYFRAGQIEEAWRFFLEMKKRK-CEIDVVTYTTIVHG-----FGVVGEIKRARNVFDGMVN----GGVLPSVA--TYNAM 318 (493)
Q Consensus 251 ~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~----~~~~~~~~--~~~~l 318 (493)
.|....+-.....++++..... .-|.+.... +|+- ..+.|++++|..-|-+.-+ .|-+.... -|..+
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 7777777777777777665432 223443333 3333 3456777777654444433 23221111 23334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011137 319 IQVLCKKDSVENAILVFEEMVGK--GYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372 (493)
Q Consensus 319 i~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 372 (493)
...+.+.|-- -|+.-..+ .-.|.....+.++.+|.. ++..+-+++++.
T Consensus 279 ANMLmkS~iN-----PFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 279 ANMLMKSGIN-----PFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred HHHHHHcCCC-----CCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 4444443310 01111111 123445567778877754 455554555443
No 380
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=64.60 E-value=15 Score=18.77 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=9.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 011137 211 NVIANGWCLVKRTNKALEVLKEM 233 (493)
Q Consensus 211 ~~l~~~~~~~~~~~~A~~~~~~m 233 (493)
..+...+...|++++|...++..
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 33344444444444444444443
No 381
>PRK12798 chemotaxis protein; Reviewed
Probab=63.46 E-value=1.4e+02 Score=28.36 Aligned_cols=226 Identities=12% Similarity=0.051 Sum_probs=127.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCCHHHH
Q 011137 219 LVKRTNKALEVLKEMVDRGLNPNLT-TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF-GVVGEIKRA 296 (493)
Q Consensus 219 ~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A 296 (493)
.-|++.- ++.+...+..++.. ....-+..| -.|+.+++.+.+..+.....++....|-.|+.+- ....+...|
T Consensus 93 SGGnP~v----lr~L~~~d~~~~~d~~L~~g~laY-~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~A 167 (421)
T PRK12798 93 SGGNPAT----LRKLLARDKLGNFDQRLADGALAY-LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATA 167 (421)
T ss_pred cCCCHHH----HHHHHHcCCCChhhHHHHHHHHHH-HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHH
Confidence 4455543 34444444443332 222223333 3689999999999988887777888888888764 455689999
Q ss_pred HHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChh-hHHHHHHHHHhcCCHHHHHHHH
Q 011137 297 RNVFDGMVNGGVLPSV----ATYNAMIQVLCKKDSVENAILVFEEMVGK-GYMPNST-TYNVVIRGLCHTGEMERALEFV 370 (493)
Q Consensus 297 ~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~-~~~~li~~~~~~~~~~~a~~~~ 370 (493)
+++|+...-. .|.+ .....-+......|+.++...+-...... ...|-.. .+..+..++.+.++-..-.. +
T Consensus 168 l~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~-l 244 (421)
T PRK12798 168 LKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDAR-L 244 (421)
T ss_pred HHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHH-H
Confidence 9999987653 2443 33444555667889998887776555543 2222222 22334444444443222222 3
Q ss_pred HHhhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-----HHHHHHHHHHHhccCCcccHHHHHHHHH
Q 011137 371 GRMKDD-ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN-----LDTYNILISSMFVRKKSDDLLVAGKLLI 444 (493)
Q Consensus 371 ~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~~~~~~~~~A~~~~~ 444 (493)
..+... .-.--...|..+...-.-.|+.+-|.-.-++.....-..+ ...|..... .-..+.++ +.+.+.
T Consensus 245 ~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~--v~s~~~~~---al~~L~ 319 (421)
T PRK12798 245 VEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAAL--VASDDAES---ALEELS 319 (421)
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHc--cCcccHHH---HHHHHh
Confidence 333322 1122356788888888889999988887777766421111 112222221 12223333 666666
Q ss_pred HHHHCCCCCCHHH
Q 011137 445 EMVDRGFMPRKFT 457 (493)
Q Consensus 445 ~m~~~g~~p~~~~ 457 (493)
.+-...+.|....
T Consensus 320 ~I~~~~L~~~Dr~ 332 (421)
T PRK12798 320 QIDRDKLSERDRA 332 (421)
T ss_pred cCChhhCChhhHH
Confidence 6666555555443
No 382
>PRK14700 recombination factor protein RarA; Provisional
Probab=62.83 E-value=1.2e+02 Score=27.41 Aligned_cols=128 Identities=11% Similarity=0.090 Sum_probs=68.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHH
Q 011137 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVI 213 (493)
Q Consensus 134 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 213 (493)
+..+......++.. ..||...|+..++.+.......+. . . =..+...+.+..-.-....+...+..+
T Consensus 63 ~~i~~~al~~ia~~--a~GDaR~aLN~LE~a~~~~~~~~~-~---~-------it~~~~~~~~~~~~~~yDk~gd~HYd~ 129 (300)
T PRK14700 63 FKIDDGLYNAMHNY--NEGDCRKILNLLERMFLISTRGDE-I---Y-------LNKELFDQAVGETSRDFHREGKEFYEQ 129 (300)
T ss_pred CCcCHHHHHHHHHh--cCCHHHHHHHHHHHHHhhccccCC-C---c-------cCHHHHHHHHhHHHhcccCCcchhHHH
Confidence 44577777777664 378888888888875531100000 0 0 012222222221111122234444455
Q ss_pred HHHHHh---cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCCC
Q 011137 214 ANGWCL---VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ-----IEEAWRFFLEMKKRKCE 274 (493)
Q Consensus 214 ~~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~ 274 (493)
++++.| ..+.+.|+-++.+|++.|-.|....-..++-++-.-|. ...|...++.....|.+
T Consensus 130 iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~P 198 (300)
T PRK14700 130 LSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMP 198 (300)
T ss_pred HHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCh
Confidence 666554 46778888888888888877766666666666655553 22334444444444443
No 383
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=62.66 E-value=68 Score=24.60 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=34.4
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011137 439 AGKLLIEMVDRGFMPR-KFTFNRVLNGLLLIGNQGLAKEILRLQ 481 (493)
Q Consensus 439 A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 481 (493)
+.++|..|..+|+--. ...|......+...|++++|.++++..
T Consensus 82 ~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 82 PREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 8889999998877655 667777888888899999999998764
No 384
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=62.49 E-value=1.1e+02 Score=27.05 Aligned_cols=83 Identities=18% Similarity=0.186 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHH
Q 011137 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459 (493)
Q Consensus 380 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 459 (493)
-++.....+...|.+.|++.+|+..|-.-.. ++...+..++......|...+ + +...-.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~----~~~~~~~~ll~~~~~~~~~~e---~--------------dlfi~R 146 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTD----PSAFAYVMLLEEWSTKGYPSE---A--------------DLFIAR 146 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-H----HHHHHHHHHHHHHHHHTSS-----H--------------HHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCC----hhHHHHHHHHHHHHHhcCCcc---h--------------hHHHHH
Confidence 3677888899999999999999877743321 333333234443344444444 2 222223
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc
Q 011137 460 RVLNGLLLIGNQGLAKEILRLQSRC 484 (493)
Q Consensus 460 ~l~~~~~~~g~~~~a~~~~~~~~~~ 484 (493)
+++ -|.-.|+...|...++.+.+.
T Consensus 147 aVL-~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 147 AVL-QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 333 466678888888877665543
No 385
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=62.40 E-value=1e+02 Score=26.45 Aligned_cols=97 Identities=11% Similarity=0.131 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC---CHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGP---TQKTF--AIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 174 (493)
.....-+|.|+--|.-...+.+|...|..- .|+.+ +..++ ..-|+.....|+.+.|++....+...-+..|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 344444444444344333344444444332 22322 33333 335666777888888887777664322223322
Q ss_pred HHHHHHH----HHHccCCHHHHHHHHHH
Q 011137 175 SFNTILD----LLCKEKKVEKAYNLFKV 198 (493)
Q Consensus 175 ~~~~ll~----~~~~~g~~~~A~~~~~~ 198 (493)
.+-.|.. =+.+.|..++|++..+.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 2222211 13456666666666543
No 386
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=62.14 E-value=39 Score=28.23 Aligned_cols=32 Identities=13% Similarity=0.211 Sum_probs=19.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 379 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
.|+..+|..++..+...|+.++|.+..+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45666666666666666666666666655554
No 387
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=61.80 E-value=1.3e+02 Score=27.52 Aligned_cols=63 Identities=8% Similarity=-0.087 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE 166 (493)
Q Consensus 101 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 166 (493)
.++..-..++....+.|+.+....+++..... .+...-..++.+++...+.+...++++.+..
T Consensus 167 i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 167 IPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp S-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 34455555555555555544444444443332 2444555555555555555555555555554
No 388
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=61.39 E-value=20 Score=23.40 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=12.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHh
Q 011137 386 NILIRYFCDAGEIERGLELFEKMG 409 (493)
Q Consensus 386 ~~l~~~~~~~g~~~~a~~~~~~~~ 409 (493)
-.++.+|...|++++|.++++++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344555555555555555555544
No 389
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.45 E-value=97 Score=32.35 Aligned_cols=109 Identities=11% Similarity=0.073 Sum_probs=57.8
Q ss_pred CCCCHHHHHHHHHHHhhChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 011137 65 LHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII 144 (493)
Q Consensus 65 ~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 144 (493)
.+++|..+.--+..+..+.++.+++.+.... .=.++|..+.+.|-++-|+.+.+.=..+ |
T Consensus 591 ~~IDptEy~FKlALi~k~ydeVl~lI~ns~L---------vGqaiIaYLqKkgypeiAL~FVkD~~tR--------F--- 650 (1202)
T KOG0292|consen 591 LTIDPTEYRFKLALLNKKYDEVLHLIKNSNL---------VGQAIIAYLQKKGYPEIALHFVKDERTR--------F--- 650 (1202)
T ss_pred EeechHHHHHHHHHHhhhhHHHHHHHHhcCc---------ccHHHHHHHHhcCCcceeeeeecCcchh--------e---
Confidence 3567777766666666666666665543211 1245556666666666665544332111 1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 011137 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR 200 (493)
Q Consensus 145 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 200 (493)
..+...|+.+.|++.-..+ .+..+|..|.....+.|+.+-|+..|++.+
T Consensus 651 -~LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~k 699 (1202)
T KOG0292|consen 651 -ELALECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTK 699 (1202)
T ss_pred -eeehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 1233456666665543322 244556666666666666666665555443
No 390
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.40 E-value=2.1e+02 Score=29.54 Aligned_cols=27 Identities=7% Similarity=0.132 Sum_probs=20.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011137 279 TYTTIVHGFGVVGEIKRARNVFDGMVN 305 (493)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 305 (493)
.-..|+..|...+++..|..++-...+
T Consensus 507 L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 507 LLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHHHHccChHHHHHHHHhccC
Confidence 334488889999999999988876643
No 391
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=59.99 E-value=1.7e+02 Score=28.36 Aligned_cols=109 Identities=9% Similarity=-0.039 Sum_probs=58.8
Q ss_pred HHHhcCCHHHHHHHHHHHH---hCCCCCCh-----hhHHHHHHHHHhcCCHHHHHHHHHHhhh-------CCCCCCH---
Q 011137 321 VLCKKDSVENAILVFEEMV---GKGYMPNS-----TTYNVVIRGLCHTGEMERALEFVGRMKD-------DECEPNV--- 382 (493)
Q Consensus 321 ~~~~~~~~~~a~~~~~~~~---~~~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~--- 382 (493)
.+.-.|++.+|.+++...- +.|...++ ..+|.+...+.+.|.+..+..+|....+ .|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 3455677777777764331 11221121 1123343344455566555555555542 2433321
Q ss_pred -------HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcc
Q 011137 383 -------QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430 (493)
Q Consensus 383 -------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 430 (493)
.......-.|...|++-.|.+.|.+.... +..++..|-.|..+|...
T Consensus 329 ls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 11222344456778888888888777654 445777888887777543
No 392
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=59.34 E-value=1.4e+02 Score=28.20 Aligned_cols=52 Identities=15% Similarity=0.262 Sum_probs=25.5
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChh--hHHHHHHHHH--hcCCHHHHHHHHHHhhh
Q 011137 323 CKKDSVENAILVFEEMVGKGYMPNST--TYNVVIRGLC--HTGEMERALEFVGRMKD 375 (493)
Q Consensus 323 ~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~--~~~~~~~a~~~~~~~~~ 375 (493)
.+.+++..|.++++.+... +.++.. .+..+..+|. ..-++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3556666666666666654 333322 2333333332 24455555555555544
No 393
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=58.95 E-value=82 Score=31.66 Aligned_cols=77 Identities=16% Similarity=0.161 Sum_probs=49.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhC--CCCCCHHHHHHHHHHHHhcCCHHH--HHHHHHHHhc-CCCCCCHHHHHHHHHH
Q 011137 352 VVIRGLCHTGEMERALEFVGRMKDD--ECEPNVQTYNILIRYFCDAGEIER--GLELFEKMGS-GVCLPNLDTYNILISS 426 (493)
Q Consensus 352 ~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~--a~~~~~~~~~-~~~~p~~~~~~~li~~ 426 (493)
.++.+|...|++-.+.++++.+... |-+.-...||..+..+.+.|.++- ...-..+..+ ..+.-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 7888888888888888888888765 333345677788888888887643 2222222222 2344566666666654
Q ss_pred Hh
Q 011137 427 MF 428 (493)
Q Consensus 427 ~~ 428 (493)
-.
T Consensus 113 sl 114 (1117)
T COG5108 113 SL 114 (1117)
T ss_pred hc
Confidence 43
No 394
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=58.77 E-value=1.7e+02 Score=27.79 Aligned_cols=55 Identities=11% Similarity=0.118 Sum_probs=35.0
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHH--HcCCHHHHHHHHHHHHhC
Q 011137 112 LAARLRDYRTVWTLVHRMKSLSLGPTQK--TFAIIAERYV--SAGKADRAVKIFLSMHEH 167 (493)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~a~~~~~~~~~~ 167 (493)
.+.+.++|..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 444678888888888888776 444443 3444444433 355677888887776653
No 395
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=58.74 E-value=1.4e+02 Score=26.93 Aligned_cols=71 Identities=23% Similarity=0.472 Sum_probs=36.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChh----hHHHHHHHHHhcCCHHHHHHHHHH-hhhCCCCCCHHHHHHHHHHHHhcCC
Q 011137 323 CKKDSVENAILVFEEMVGKGYMPNST----TYNVVIRGLCHTGEMERALEFVGR-MKDDECEPNVQTYNILIRYFCDAGE 397 (493)
Q Consensus 323 ~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~ 397 (493)
.+...+++.....++-.+.+--|+.. .|..++++- +|.+-.++..+ +++ ...+|..|+.+++..|+
T Consensus 266 s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsav----eWnKkeelva~qalr-----hlK~yaPLL~af~s~g~ 336 (412)
T KOG2297|consen 266 SEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAV----EWNKKEELVAEQALR-----HLKQYAPLLAAFCSQGQ 336 (412)
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHH----hhchHHHHHHHHHHH-----HHHhhhHHHHHHhcCCh
Confidence 34445666655554433333344543 455555543 33332222221 111 24478888888888888
Q ss_pred HHHHH
Q 011137 398 IERGL 402 (493)
Q Consensus 398 ~~~a~ 402 (493)
.+-.+
T Consensus 337 sEL~L 341 (412)
T KOG2297|consen 337 SELEL 341 (412)
T ss_pred HHHHH
Confidence 76554
No 396
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=58.31 E-value=63 Score=22.80 Aligned_cols=14 Identities=14% Similarity=0.200 Sum_probs=6.4
Q ss_pred CCHHHHHHHHHHHH
Q 011137 256 GQIEEAWRFFLEMK 269 (493)
Q Consensus 256 g~~~~a~~~~~~~~ 269 (493)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444444
No 397
>PRK10941 hypothetical protein; Provisional
Probab=58.10 E-value=83 Score=28.01 Aligned_cols=76 Identities=16% Similarity=0.086 Sum_probs=48.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHH
Q 011137 176 FNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG-LNPNLTTYNIVLKG 251 (493)
Q Consensus 176 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~ 251 (493)
.+.+-.+|.+.++++.|+.+.+.+..-.|.+..-+.--.-.|.+.|.+..|..=++...+.- -.|+.......+..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 34455667777777777777777766666666666666667777777777777777766543 23344444444443
No 398
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=57.20 E-value=43 Score=21.00 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=15.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCHH
Q 011137 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLD 418 (493)
Q Consensus 388 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 418 (493)
+.-++.+.|++++|.+..+.+.+ +.|+..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~ 35 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNR 35 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-H
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcH
Confidence 44455666666666666666665 345433
No 399
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.19 E-value=22 Score=32.32 Aligned_cols=87 Identities=17% Similarity=0.059 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011137 187 KKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266 (493)
Q Consensus 187 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 266 (493)
|.++.|++.|.......++....|..-.+.+.+.+....|++=+......+.. ...-|-.--.+....|++++|...+.
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHHHHH
Confidence 44555555444444444444444444445555555555555555444433211 11223333333334455555555555
Q ss_pred HHHHCCCC
Q 011137 267 EMKKRKCE 274 (493)
Q Consensus 267 ~~~~~~~~ 274 (493)
...+.+..
T Consensus 207 ~a~kld~d 214 (377)
T KOG1308|consen 207 LACKLDYD 214 (377)
T ss_pred HHHhcccc
Confidence 55555443
No 400
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=55.99 E-value=96 Score=25.59 Aligned_cols=67 Identities=13% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCC--CHHHHHHHHHH-----HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 011137 258 IEEAWRFFLEMKKRKCEI--DVVTYTTIVHG-----FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327 (493)
Q Consensus 258 ~~~a~~~~~~~~~~~~~~--~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 327 (493)
++.|+.+|+.+.+.-..| -......++.. |.+.|.+++|.++++..... |+......-+....+..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHccc
No 401
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=55.65 E-value=22 Score=23.17 Aligned_cols=30 Identities=30% Similarity=0.384 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483 (493)
Q Consensus 454 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (493)
|..--..+|.++...|++++|.++++.+.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444445567788888888888888876554
No 402
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=55.58 E-value=1.7e+02 Score=26.93 Aligned_cols=150 Identities=9% Similarity=0.021 Sum_probs=71.2
Q ss_pred HHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 011137 194 NLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR---AGQIEEAWRFFLEMKK 270 (493)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 270 (493)
.++++..+..+.+...+..++..+.+..+.++..+.++++...... +...|...+..... .-.++....+|.+..+
T Consensus 52 silerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 52 SILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 3344333333444444555555555555555555555555544222 33444444433322 1233444444433222
Q ss_pred C------CC----CCC-------HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHH
Q 011137 271 R------KC----EID-------VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV-LPSVATYNAMIQVLCKKDSVENAI 332 (493)
Q Consensus 271 ~------~~----~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~ 332 (493)
. +. ... ...+..+.......|..+.|..+++.+.+.++ .|+.. ......+..
T Consensus 131 ~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~----------~~~~~~~~~ 200 (321)
T PF08424_consen 131 ALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPESL----------SSSSFSERL 200 (321)
T ss_pred HHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcccc----------ccccHHHHH
Confidence 1 10 011 12233344456788999999999999988644 22221 111112555
Q ss_pred HHHHHHHhCCC----CCChhhHHHHH
Q 011137 333 LVFEEMVGKGY----MPNSTTYNVVI 354 (493)
Q Consensus 333 ~~~~~~~~~~~----~~~~~~~~~li 354 (493)
..|+...+.++ .|+...|...+
T Consensus 201 ~~fe~FWeS~vpRiGE~gA~GW~~~~ 226 (321)
T PF08424_consen 201 ESFEEFWESEVPRIGEPGAKGWRKWM 226 (321)
T ss_pred HHHHHHhCcCCCCCCCCCcchhhhhh
Confidence 66666666543 34555555443
No 403
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=55.55 E-value=2.5e+02 Score=28.77 Aligned_cols=186 Identities=11% Similarity=0.100 Sum_probs=106.6
Q ss_pred hHHHHHHHHHhhcCCCCCCC--HHHHHHHHHHHH-hcCChHHHHHHHHHHhhCCCCCCHH-----HHHHHHHHHHHcCCH
Q 011137 83 ALKALHFFNILSYHPTYAHS--PSSFDHAIDLAA-RLRDYRTVWTLVHRMKSLSLGPTQK-----TFAIIAERYVSAGKA 154 (493)
Q Consensus 83 ~~~A~~~~~~~~~~~~~~~~--~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~ 154 (493)
-..|++-++.+..+...+|. ..++-.+...+. ...+++.|...+++.....-.++-. .-..+++.+.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 34577777777765555553 345666667666 5689999999999865443222221 223456666666655
Q ss_pred HHHHHHHHHHHhCC----CCCCHHHHHHH-HHHHHccCCHHHHHHHHHHhhcC----CCCCcchHHHHHHHHH--hcCCh
Q 011137 155 DRAVKIFLSMHEHG----CRQSLNSFNTI-LDLLCKEKKVEKAYNLFKVFRGK----FKADVISYNVIANGWC--LVKRT 223 (493)
Q Consensus 155 ~~a~~~~~~~~~~~----~~~~~~~~~~l-l~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~--~~~~~ 223 (493)
. |...+++..+.- ..+-...+..+ +..+...++...|.+.++.+... ..+....+..++.+.. ..+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 5 888888766431 11222333333 33333447999999998876542 2233334444444433 45666
Q ss_pred hHHHHHHHHHHhCCC---------CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 011137 224 NKALEVLKEMVDRGL---------NPNLTTYNIVLKGYF--RAGQIEEAWRFFLEMK 269 (493)
Q Consensus 224 ~~A~~~~~~m~~~g~---------~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~ 269 (493)
+++.+.++++..... .|-..+|..++..++ ..|+++.+...++++.
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777777643211 234456666666554 5677666666555443
No 404
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=55.27 E-value=1.6e+02 Score=26.56 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhccCCHHHHH
Q 011137 277 VVTYTTIVHGFGVVGEIKRAR 297 (493)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~A~ 297 (493)
..+|.-|+.+++..|+.+..+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 345677777888877766543
No 405
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=54.93 E-value=26 Score=31.31 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH
Q 011137 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142 (493)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 142 (493)
-|+..|....+.||.++|+.++++.++.|+.--..+|.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 35677777777777777777777777777643334443
No 406
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=54.83 E-value=1.4e+02 Score=25.90 Aligned_cols=59 Identities=15% Similarity=0.283 Sum_probs=31.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Q 011137 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR-AGQIEEAWRFFLEMKK 270 (493)
Q Consensus 212 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~ 270 (493)
.++..+-+.|+++++...++++...+...+..--+.+-.+|-. .|....+++++..+..
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 3455556666677777766666666655555555555555422 2444445555554443
No 407
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=54.66 E-value=2.5e+02 Score=28.67 Aligned_cols=193 Identities=11% Similarity=0.090 Sum_probs=112.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHh-hCCCCCC--HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhCCCCCCHH--
Q 011137 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMK-SLSLGPT--QKTFAIIAERYV-SAGKADRAVKIFLSMHEHGCRQSLN-- 174 (493)
Q Consensus 101 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~~~--~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~-- 174 (493)
.+...|..+|.. |++.++.+. +..++|. ..++..+...+. ...+++.|...+++.......++..
T Consensus 28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 356677777764 555666666 3334333 335555666665 6789999999999876433223222
Q ss_pred ---HHHHHHHHHHccCCHHHHHHHHHHhhcCCCC---Cc--chHHHH-HHHHHhcCChhHHHHHHHHHHhCC---CCCCH
Q 011137 175 ---SFNTILDLLCKEKKVEKAYNLFKVFRGKFKA---DV--ISYNVI-ANGWCLVKRTNKALEVLKEMVDRG---LNPNL 242 (493)
Q Consensus 175 ---~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---~~--~~~~~l-~~~~~~~~~~~~A~~~~~~m~~~g---~~p~~ 242 (493)
....++..+.+.+... |...+++..+.... .. ..|..+ +..+...+++..|.+.++.+...- ..|-.
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 2234566777776665 88888765443221 11 122233 333333479999999999886432 23344
Q ss_pred HHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCC---------CCCHHHHHHHHHHH--hccCCHHHHHHHHHHH
Q 011137 243 TTYNIVLKGYF--RAGQIEEAWRFFLEMKKRKC---------EIDVVTYTTIVHGF--GVVGEIKRARNVFDGM 303 (493)
Q Consensus 243 ~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~---------~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~ 303 (493)
..+..++.+.. +.+..+++.+.++.+..... .|...+|..+++.+ ...|+++.+...++++
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555544 44656777777776644221 23456666666654 4567766666665554
No 408
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=54.50 E-value=1.1e+02 Score=24.25 Aligned_cols=85 Identities=8% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCC-----CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011137 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSL-----GPTQKTFAIIAERYVSAGK-ADRAVKIFLSMHEHGCRQSLNSFNTI 179 (493)
Q Consensus 106 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l 179 (493)
.|.++.-.+..+++...+.+++.+..... ..+...|..++.+.+.... ---+..+|..+.+.+.+.+..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q ss_pred HHHHHccCCHH
Q 011137 180 LDLLCKEKKVE 190 (493)
Q Consensus 180 l~~~~~~g~~~ 190 (493)
+.++.+....+
T Consensus 122 i~~~l~g~~~~ 132 (145)
T PF13762_consen 122 IKAALRGYFHD 132 (145)
T ss_pred HHHHHcCCCCc
No 409
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=54.27 E-value=48 Score=20.20 Aligned_cols=31 Identities=19% Similarity=0.150 Sum_probs=14.4
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 011137 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145 (493)
Q Consensus 115 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 145 (493)
+.|-..++..++++|.+.|...+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444444444555555444444444444433
No 410
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=54.08 E-value=78 Score=22.64 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=15.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhc
Q 011137 388 LIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 388 l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
+.......|+.++|...+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 44555667777777777776654
No 411
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=54.02 E-value=48 Score=20.18 Aligned_cols=31 Identities=10% Similarity=0.089 Sum_probs=14.9
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011137 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVL 249 (493)
Q Consensus 219 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 249 (493)
+.|-..++..++++|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444445555555555555544444444333
No 412
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=52.47 E-value=66 Score=23.02 Aligned_cols=53 Identities=19% Similarity=0.105 Sum_probs=26.5
Q ss_pred HhcCChhHHHHHHHHHHh----CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011137 218 CLVKRTNKALEVLKEMVD----RGLNPN----LTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270 (493)
Q Consensus 218 ~~~~~~~~A~~~~~~m~~----~g~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 270 (493)
.+.|++.+|.+.+.+..+ .+.... ......+.......|+.++|.+.+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345666666555554432 211110 12222344455566777777777666554
No 413
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=52.31 E-value=24 Score=18.55 Aligned_cols=10 Identities=20% Similarity=0.418 Sum_probs=3.8
Q ss_pred HHHHHHHHHh
Q 011137 190 EKAYNLFKVF 199 (493)
Q Consensus 190 ~~A~~~~~~~ 199 (493)
+.|..+|+++
T Consensus 4 ~~~r~i~e~~ 13 (33)
T smart00386 4 ERARKIYERA 13 (33)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 414
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=52.22 E-value=31 Score=30.87 Aligned_cols=30 Identities=23% Similarity=0.220 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 011137 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLN 239 (493)
Q Consensus 210 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 239 (493)
|+..|....+.||+++|+.++++.++.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 456666666666666666666666666655
No 415
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=52.20 E-value=98 Score=31.13 Aligned_cols=91 Identities=13% Similarity=0.201 Sum_probs=61.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHH------HHHHHHHhhhCCCCCCHHHHHHH
Q 011137 317 AMIQVLCKKDSVENAILVFEEMVGKG--YMPNSTTYNVVIRGLCHTGEMER------ALEFVGRMKDDECEPNVQTYNIL 388 (493)
Q Consensus 317 ~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~------a~~~~~~~~~~~~~~~~~~~~~l 388 (493)
.|..+|...|++..+..+++.....+ -+.-...||..|+...+.|.++- |.+.++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78999999999999999999998763 23334578888888888887542 333333333 45688899888
Q ss_pred HHHHHhcCCHHHHHHHHHHHhc
Q 011137 389 IRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 389 ~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
+++-..--.-.-..-++.++..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 8776553333334444444443
No 416
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=51.61 E-value=15 Score=28.19 Aligned_cols=18 Identities=33% Similarity=0.469 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHCCCCCC
Q 011137 294 KRARNVFDGMVNGGVLPS 311 (493)
Q Consensus 294 ~~A~~~~~~~~~~~~~~~ 311 (493)
..|..+|.+|++.|.+||
T Consensus 112 ~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 112 TDAYAVFRKMLERGNPPD 129 (140)
T ss_pred CcHHHHHHHHHhCCCCCc
Confidence 344444555555444444
No 417
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=51.01 E-value=1.7e+02 Score=28.14 Aligned_cols=46 Identities=7% Similarity=0.135 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011137 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305 (493)
Q Consensus 257 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 305 (493)
.+++-+++++.+.+.|-. | ....-|+.|.+.+++++|...+++-.+
T Consensus 69 ~~~e~i~lL~~l~~~g~a-d--~lp~TIDSyTR~n~y~~A~~~l~~s~~ 114 (480)
T TIGR01503 69 LLDEHIELLRTLQEEGGA-D--FLPSTIDAYTRQNRYDEAAVGIKESIK 114 (480)
T ss_pred cHHHHHHHHHHHHHccCC-C--ccceeeecccccccHHHHHHHHHhhhh
Confidence 466777777777776421 2 334456778888888888888877655
No 418
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=50.58 E-value=2e+02 Score=26.28 Aligned_cols=135 Identities=11% Similarity=0.061 Sum_probs=73.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH----CCCCCCH
Q 011137 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR-KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN----GGVLPSV 312 (493)
Q Consensus 238 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~ 312 (493)
+..|...++.|... +..++++-.+..+...+. |-.--...+......||+-||.+.|++.+.+..+ .|.+.|+
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 44455555544433 122333333334444333 2222244566677788999999888888776544 3666676
Q ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 011137 313 ATYNAMIQV-LCKKDSVENAILVFEEMVGKGYMPNS----TTYNVVIRGLCHTGEMERALEFVGRMKDD 376 (493)
Q Consensus 313 ~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 376 (493)
..+..-+.. |....-+.+-++..+.+.+.|..-+. .+|..+- |....++.+|-.+|-+....
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 655544433 33333445555566666666654332 2444333 23446788888877766543
No 419
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.53 E-value=15 Score=33.34 Aligned_cols=94 Identities=15% Similarity=0.050 Sum_probs=66.3
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHH
Q 011137 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEV 229 (493)
Q Consensus 150 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 229 (493)
..|.++.|++.|...+... ++....|..-.+++.+.++...|++=+.......+....-|-.--.+....|++++|...
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 4678899999998888764 455566666677788888888888776665554333444454444555567999999999
Q ss_pred HHHHHhCCCCCCHHH
Q 011137 230 LKEMVDRGLNPNLTT 244 (493)
Q Consensus 230 ~~~m~~~g~~p~~~~ 244 (493)
+....+.+..+....
T Consensus 205 l~~a~kld~dE~~~a 219 (377)
T KOG1308|consen 205 LALACKLDYDEANSA 219 (377)
T ss_pred HHHHHhccccHHHHH
Confidence 999988877654443
No 420
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=50.43 E-value=88 Score=22.11 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=15.9
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 011137 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSV 328 (493)
Q Consensus 289 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 328 (493)
..|+.+.|.+++..+. . ....|..++.++...|.-
T Consensus 48 ~~g~~~~ar~LL~~L~-r----g~~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 48 NHGNESGARELLKRIV-Q----KEGWFSKFLQALRETEHH 82 (88)
T ss_pred ccCcHHHHHHHHHHhc-c----CCcHHHHHHHHHHHcCch
Confidence 3445555555555544 2 122344444444444443
No 421
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=49.92 E-value=21 Score=27.51 Aligned_cols=32 Identities=22% Similarity=0.470 Sum_probs=25.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011137 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGL 357 (493)
Q Consensus 324 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 357 (493)
..|.-..|..+|+.|++.|.+|| .|+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 45667789999999999998887 477777653
No 422
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=49.27 E-value=46 Score=26.30 Aligned_cols=43 Identities=12% Similarity=0.027 Sum_probs=19.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 011137 109 AIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSA 151 (493)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (493)
+++.+.+.++.-.|.++++.+.+.++..+..|....+..+...
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~ 68 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEA 68 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHC
Confidence 3344444444444555555555444444444433333333333
No 423
>PRK09857 putative transposase; Provisional
Probab=49.25 E-value=1.8e+02 Score=26.38 Aligned_cols=28 Identities=11% Similarity=0.067 Sum_probs=14.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 011137 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCE 274 (493)
Q Consensus 247 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 274 (493)
++..-+.+.|.-+++.++..+|...|..
T Consensus 245 TiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 245 TIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3344444444444555555556555554
No 424
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=49.02 E-value=1.4e+02 Score=27.09 Aligned_cols=114 Identities=15% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 011137 179 ILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258 (493)
Q Consensus 179 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 258 (493)
++....+.++.....+.++.+. ....-...+..+...|++..|++++.+..+ -...+..+-..-.-..++
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~-----~v~~~~~~l~~ll~~~dy~~Al~li~~~~~-----~l~~l~~~~c~~~L~~~L 173 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK-----TVQQTQSRLQELLEEGDYPGALDLIEECQQ-----LLEELKGYSCVRHLSSQL 173 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----HHHhcccchHHHHHhHHH
Q ss_pred HHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 011137 259 EEAWRFFLEMKKRK-----CEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302 (493)
Q Consensus 259 ~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 302 (493)
++.....+++.+.. ...|+..|..+..+|...|+...+.+-+..
T Consensus 174 ~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 174 QETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHH
No 425
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=48.76 E-value=1.8e+02 Score=25.22 Aligned_cols=127 Identities=10% Similarity=0.202 Sum_probs=64.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 011137 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185 (493)
Q Consensus 106 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 185 (493)
....+..|.+.-+|..|-...++..+ | ..+ ...+-.|.+..+.+--.++.+-....+++-+.....+++ +..
T Consensus 133 lRRtMEiyS~ttRFalaCN~s~KIiE----P-IQS-RCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta 204 (333)
T KOG0991|consen 133 LRRTMEIYSNTTRFALACNQSEKIIE----P-IQS-RCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTA 204 (333)
T ss_pred HHHHHHHHcccchhhhhhcchhhhhh----h-HHh-hhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhc
Confidence 44455556655555555444433322 1 111 112223444444444444444444455555555555544 556
Q ss_pred cCCHHHHHHHHHHhhcC-------------CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 011137 186 EKKVEKAYNLFKVFRGK-------------FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241 (493)
Q Consensus 186 ~g~~~~A~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~ 241 (493)
.||..+|+.-++.-..+ ..|.+.....++..| ..+++++|.+++.++.+.|..|.
T Consensus 205 ~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 205 QGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred cchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHH
Confidence 78888887766654322 234444444444443 34567777777777777776643
No 426
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.63 E-value=3.5e+02 Score=28.54 Aligned_cols=49 Identities=10% Similarity=0.104 Sum_probs=30.9
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011137 111 DLAARLRDYRTVWTLVHRMKSLSLGPTQ--KTFAIIAERYVSAGKADRAVKIFLSMH 165 (493)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~ 165 (493)
..|...|+++.|.++-+.- |+. .++..-...|.+.+++..|-++|.++.
T Consensus 366 k~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 3466677777776654332 222 344555566777788888888887763
No 427
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=48.33 E-value=86 Score=23.27 Aligned_cols=26 Identities=12% Similarity=0.330 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011137 315 YNAMIQVLCKKDSVENAILVFEEMVG 340 (493)
Q Consensus 315 ~~~li~~~~~~~~~~~a~~~~~~~~~ 340 (493)
|..++..|...|..++|.+++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55555556666666666666655554
No 428
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=48.06 E-value=1.1e+02 Score=24.19 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=22.4
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 011137 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278 (493)
Q Consensus 231 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 278 (493)
+.+.+.|++++.. -..++..+...++.-.|.++++.+.+.+...+..
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~isla 56 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLA 56 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHh
Confidence 3344445544332 2234444554544455555665555554444433
No 429
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=48.03 E-value=64 Score=20.23 Aligned_cols=27 Identities=11% Similarity=-0.004 Sum_probs=20.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011137 459 NRVLNGLLLIGNQGLAKEILRLQSRCG 485 (493)
Q Consensus 459 ~~l~~~~~~~g~~~~a~~~~~~~~~~g 485 (493)
..+.-++.+.|++++|.++.+.+.+..
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 345557889999999999998887763
No 430
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.35 E-value=3e+02 Score=27.42 Aligned_cols=154 Identities=13% Similarity=0.094 Sum_probs=86.0
Q ss_pred cCCHHHHHHHHHHhhcCCCC------------CcchHHHHHHHHHhcCChhHHHHHHHHH-------HhCCCCC------
Q 011137 186 EKKVEKAYNLFKVFRGKFKA------------DVISYNVIANGWCLVKRTNKALEVLKEM-------VDRGLNP------ 240 (493)
Q Consensus 186 ~g~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~m-------~~~g~~p------ 240 (493)
...+++|...|........| .+.+.-.+...+...|+.+.|-.++++. ..-.+.|
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34456666666544333222 2234445556677777776666655543 2211211
Q ss_pred -------CHHHHHH---HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHC---
Q 011137 241 -------NLTTYNI---VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG-VVGEIKRARNVFDGMVNG--- 306 (493)
Q Consensus 241 -------~~~~~~~---l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~--- 306 (493)
|..-|-. -|..+.+.|.+..|.++.+.+.+....-|+.....+|+.|+ +..++.-.+++++.....
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 1222222 24456678889999998888888876667777788888775 556777777777776443
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHH
Q 011137 307 GVLPSVATYNAMIQVLCKKDS---VENAILVFEEMV 339 (493)
Q Consensus 307 ~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~ 339 (493)
..-|+-.--.++...|..... -+.|...+.+..
T Consensus 411 ~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl 446 (665)
T KOG2422|consen 411 SQLPNFGYSLALARFFLRKNEEDDRQSALNALLQAL 446 (665)
T ss_pred hhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Confidence 223443333344445544433 334444444443
No 431
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=47.05 E-value=1e+02 Score=21.92 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=15.9
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011137 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236 (493)
Q Consensus 204 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 236 (493)
|.|......+...+...|++++|++.+-++.+.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 334444455555555555555555555555443
No 432
>PRK10941 hypothetical protein; Provisional
Probab=46.96 E-value=2.1e+02 Score=25.51 Aligned_cols=60 Identities=10% Similarity=-0.033 Sum_probs=38.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 011137 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411 (493)
Q Consensus 351 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 411 (493)
+.+-.+|.+.++++.|+++.+.+.... +.+..-+.--.-.|.+.|.+..|..-++...+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 334456667777777777777776653 334555555566667777777777766666554
No 433
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=46.45 E-value=4e+02 Score=28.54 Aligned_cols=53 Identities=15% Similarity=0.067 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHhccCCcccHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCH
Q 011137 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD-RGFMPRKFTFNRVLNGLLLIGNQ 471 (493)
Q Consensus 416 ~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~~~~~g~~ 471 (493)
|..++..-..-+...|++.. +.+++.++.+ .|-.++...|..++..+...|--
T Consensus 1230 dsK~~~~a~~ha~~~~~yGr---~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~ 1283 (1304)
T KOG1114|consen 1230 DSKVWQIAKKHAKALGQYGR---ALKALLKLIEENGESATKDVAVLLAELLENLGWN 1283 (1304)
T ss_pred CchheehhHHHHHHHHHHHH---HHHHHHHHHHhccccchhHHHHHHHHHHHHhCch
Confidence 44444444444445556666 6666666554 34455666665555555555543
No 434
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=46.35 E-value=1.1e+02 Score=22.27 Aligned_cols=52 Identities=12% Similarity=0.085 Sum_probs=26.1
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 011137 181 DLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237 (493)
Q Consensus 181 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g 237 (493)
..+...|++++|..+.+.. ..||...|..|... +.|..+++..-+.+|..+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~---~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL---CYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCC---CCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 3455556666665544433 34555555554432 4455555555555555443
No 435
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=46.30 E-value=59 Score=24.29 Aligned_cols=45 Identities=13% Similarity=0.036 Sum_probs=25.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 011137 109 AIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGK 153 (493)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 153 (493)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 344444445555666666666666555566555555555555553
No 436
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=45.89 E-value=2.2e+02 Score=25.49 Aligned_cols=83 Identities=8% Similarity=0.155 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----c
Q 011137 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK-------DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH----T 360 (493)
Q Consensus 292 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 360 (493)
+..+|...|++..+.|..+...+...+...|... .+...|...+.++...+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 5555666666555554432211222232333222 12235677777666665 33333444444432 3
Q ss_pred CCHHHHHHHHHHhhhCC
Q 011137 361 GEMERALEFVGRMKDDE 377 (493)
Q Consensus 361 ~~~~~a~~~~~~~~~~~ 377 (493)
.+.++|..+|....+.|
T Consensus 205 ~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 205 RDLKKAFRWYKKAAEQG 221 (292)
T ss_pred cCHHHHHHHHHHHHHCC
Confidence 36777888888877776
No 437
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=45.83 E-value=1e+02 Score=21.65 Aligned_cols=42 Identities=17% Similarity=0.134 Sum_probs=23.6
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011137 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165 (493)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 165 (493)
++|+-....|+..|+..|..++..+.-+-.++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 555555555665666666665555555555555555555554
No 438
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=45.37 E-value=3e+02 Score=26.83 Aligned_cols=107 Identities=13% Similarity=0.025 Sum_probs=65.2
Q ss_pred HHhccCCHHHHHHHHHHHHHC---CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCCh---
Q 011137 286 GFGVVGEIKRARNVFDGMVNG---GVLPS-----VATYNAMIQVLCKKDSVENAILVFEEMVG-------KGYMPNS--- 347 (493)
Q Consensus 286 ~~~~~g~~~~A~~~~~~~~~~---~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~--- 347 (493)
.+.-.|++.+|.+++...-.. |...+ -..||.|.-...+.|.+..+..+|....+ .|+.|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 455678888888877654221 21111 12345555555666776666666655543 3544421
Q ss_pred --------hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 011137 348 --------TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394 (493)
Q Consensus 348 --------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 394 (493)
.+||.= -.|...|++-.|.+.|.+.... +.-++..|-.|..+|..
T Consensus 329 ls~nks~eilYNcG-~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYNCG-LLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHhhh-HHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 234432 3466789999999999888765 35577888888888763
No 439
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=45.14 E-value=49 Score=24.99 Aligned_cols=45 Identities=11% Similarity=0.051 Sum_probs=25.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 011137 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAG 152 (493)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 152 (493)
.+++.+...+.+-.|.++++.+.+.+...+..|....+..+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 445555555556666677777766666566665555555555554
No 440
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=44.79 E-value=1.9e+02 Score=24.22 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=13.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 387 ILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 387 ~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
+++..|-+..++.++.++++.|.+
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~e 160 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHE 160 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666665544
No 441
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=44.75 E-value=2.5e+02 Score=25.71 Aligned_cols=92 Identities=14% Similarity=0.150 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHH--
Q 011137 383 QTYNILIRYFCDAGEIERGLELFEKMGSG----VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF-- 456 (493)
Q Consensus 383 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-- 456 (493)
+.+......||+.|+.+.|.+.+.+-.+. |...|+..+..-+..+ -++.+-..+-++..+.+.++|-..+..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglf--y~D~~lV~~~iekak~liE~GgDWeRrNR 182 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLF--YLDHDLVTESIEKAKSLIEEGGDWERRNR 182 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHh--hccHHHHHHHHHHHHHHHHhCCChhhhhh
Confidence 34455556666666666666665544332 4444444333222211 122222222455555566655444432
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHH
Q 011137 457 --TFNRVLNGLLLIGNQGLAKEIL 478 (493)
Q Consensus 457 --~~~~l~~~~~~~g~~~~a~~~~ 478 (493)
+|..+ .|....++.+|-.+|
T Consensus 183 lKvY~Gl--y~msvR~Fk~Aa~Lf 204 (393)
T KOG0687|consen 183 LKVYQGL--YCMSVRNFKEAADLF 204 (393)
T ss_pred HHHHHHH--HHHHHHhHHHHHHHH
Confidence 22222 123344555555544
No 442
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=44.67 E-value=1.3e+02 Score=22.35 Aligned_cols=27 Identities=26% Similarity=0.521 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 384 TYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 384 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
-|..|+..|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466677777777777777777777765
No 443
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=44.13 E-value=2.4e+02 Score=25.32 Aligned_cols=67 Identities=13% Similarity=0.176 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHH----CCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011137 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVN----GGVLPSVATYNA-MIQVLCKKDSVENAILVFEEMVGKGY 343 (493)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~~~~ 343 (493)
...+..+...|++.++.+.+.+...+... .|.+.|....-+ |.-.|....-+++-++..+.|.++|.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGg 186 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGG 186 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 34445555556666655555554444322 233333322111 12223333334555555555655554
No 444
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=43.86 E-value=1.4e+02 Score=26.17 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=10.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 011137 144 IAERYVSAGKADRAVKIFLSM 164 (493)
Q Consensus 144 l~~~~~~~g~~~~a~~~~~~~ 164 (493)
+.+.|...|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344455555555555555544
No 445
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=43.86 E-value=60 Score=31.11 Aligned_cols=102 Identities=15% Similarity=-0.012 Sum_probs=44.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhH
Q 011137 147 RYVSAGKADRAVKIFLSMHEHGCRQS-LNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNK 225 (493)
Q Consensus 147 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 225 (493)
.+...+.++.|+.++.++++.. |+ +..|..-..++.+.+++..|+.=+....+..+.....|..-..++.+.+++.+
T Consensus 13 ~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 3344555666666666665542 32 22222223455555555555543333333222222223233333333444444
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011137 226 ALEVLKEMVDRGLNPNLTTYNIVLKGY 252 (493)
Q Consensus 226 A~~~~~~m~~~g~~p~~~~~~~l~~~~ 252 (493)
|+..|+.... +.|+..-....+.-|
T Consensus 91 A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 91 ALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 4444444433 345554444444443
No 446
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.50 E-value=2.9e+02 Score=26.16 Aligned_cols=63 Identities=6% Similarity=-0.022 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011137 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKFK---ADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236 (493)
Q Consensus 174 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 236 (493)
..+.-+.+.|..+|+++.|++.|-+.+.-.. -....|-.+|..-...|+|.....+..+..+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 4577788899999999999999988654322 23345666777777788998888888887754
No 447
>PRK09857 putative transposase; Provisional
Probab=43.27 E-value=2.5e+02 Score=25.46 Aligned_cols=65 Identities=12% Similarity=0.163 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 011137 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416 (493)
Q Consensus 351 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 416 (493)
..++....+.++.++..++++.+.+. .+........+..-+.+.|..+++.++.++|...|+..+
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 34444444455555555555555443 222333333455555555555556666666666655433
No 448
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=42.12 E-value=2.4e+02 Score=24.65 Aligned_cols=116 Identities=10% Similarity=0.001 Sum_probs=61.5
Q ss_pred ccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 011137 185 KEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT-TYNIVLKGYFRAGQIEEAWR 263 (493)
Q Consensus 185 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~ 263 (493)
....++.|+..|.+.....|....-|..-+.++.+..+++.+..--.+.++. .||.+ ....+..+......+++|+.
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHHHH
Confidence 3445566666555544443434455666667777777777776655555543 34443 23344555556667777777
Q ss_pred HHHHHHHC----CCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 011137 264 FFLEMKKR----KCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302 (493)
Q Consensus 264 ~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 302 (493)
.+.+.... .+.+.......|..+--+.=...+..++.++
T Consensus 100 ~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 100 VLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 77665332 2334444455555443333334444444433
No 449
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=41.98 E-value=3.5e+02 Score=26.54 Aligned_cols=99 Identities=9% Similarity=0.094 Sum_probs=67.7
Q ss_pred CCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhc--cCCcccHHHHHHHHHHHHHC-CCCCC
Q 011137 379 EPNVQTY-NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV--RKKSDDLLVAGKLLIEMVDR-GFMPR 454 (493)
Q Consensus 379 ~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~--~~~~~~~~~A~~~~~~m~~~-g~~p~ 454 (493)
.++..++ +.+++.+.+.|-.++|..++..+... .+|+...|..+|..=.. ..+... +..+++.|... | -|
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~---~r~~yd~a~~~fg--~d 529 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLAN---IREYYDRALREFG--AD 529 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchH---HHHHHHHHHHHhC--CC
Confidence 3444433 56777788889999999999999886 45678888888754322 122344 77888888754 5 67
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 455 KFTFNRVLNGLLLIGNQGLAKEILRLQSR 483 (493)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (493)
...|...+.--...|..+.+-.++-.+.+
T Consensus 530 ~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 530 SDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred hHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 77777777666678888777666644433
No 450
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=41.92 E-value=1.6e+02 Score=22.62 Aligned_cols=42 Identities=17% Similarity=0.217 Sum_probs=32.4
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011137 439 AGKLLIEMVDRGFMPR-KFTFNRVLNGLLLIGNQGLAKEILRL 480 (493)
Q Consensus 439 A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 480 (493)
..++|..|..+|+--. ...|......+...|++.+|.++++.
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 6678999998887665 44566666677889999999988863
No 451
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=41.83 E-value=1.8e+02 Score=26.34 Aligned_cols=43 Identities=7% Similarity=0.291 Sum_probs=22.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011137 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340 (493)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 340 (493)
++++.+...++.|.-.++..+.-.+.+.=.+...+.+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 3444444555555555555554445555555555555555544
No 452
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=41.60 E-value=4.7e+02 Score=28.03 Aligned_cols=81 Identities=10% Similarity=0.076 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011137 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD-ECEPNVQTYNILIRYFCDAGEIERGLELFEK 407 (493)
Q Consensus 329 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 407 (493)
+.-.+.|.++..---..|..++..-...+...|++..|++++.++.+. +-.++...|..++..+...|-- -...+++.
T Consensus 1213 d~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~-H~~t~~~~ 1291 (1304)
T KOG1114|consen 1213 DSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN-HLATFVKN 1291 (1304)
T ss_pred hhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch-HhHHHHhh
Confidence 334444444443211225555555555566677777788777777663 4456666666666666665543 33334444
Q ss_pred Hhc
Q 011137 408 MGS 410 (493)
Q Consensus 408 ~~~ 410 (493)
+..
T Consensus 1292 ~~~ 1294 (1304)
T KOG1114|consen 1292 WMR 1294 (1304)
T ss_pred hee
Confidence 443
No 453
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=41.27 E-value=2e+02 Score=27.37 Aligned_cols=131 Identities=14% Similarity=0.129 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCc---------
Q 011137 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADV--------- 207 (493)
Q Consensus 137 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--------- 207 (493)
|...|-.---+-.+..--.+..+-.+.+.+.+ |+......+++.+-..-+-..-.+.++..+.+..|+.
T Consensus 38 DEFvYQfqsfc~yr~~~~~~~~~e~~~l~~~~--~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~ 115 (404)
T PF10255_consen 38 DEFVYQFQSFCQYRSKLKKKTEEEIQLLKENN--PDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSP 115 (404)
T ss_pred HHHHHHhhhHHHHhhhccCCCHHHHHHHHhhc--cCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhccccccc
Q ss_pred -------chHHHHHHHHHhcCChhHHHHHHHHHHhCC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011137 208 -------ISYNVIANGWCLVKRTNKALEVLKEMVDRG-------LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269 (493)
Q Consensus 208 -------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 269 (493)
.+...|++.++-.|++..|+++++.+.-.. ..-.+.+|--+.-+|.-.+++.+|.+.|..+.
T Consensus 116 l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 116 LYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 454
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=40.94 E-value=1.7e+02 Score=25.59 Aligned_cols=55 Identities=13% Similarity=0.115 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhC----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011137 352 VVIRGLCHTGEMERALEFVGRMKDD----E-CEPNVQTYNILIRYFCDAGEIERGLELFE 406 (493)
Q Consensus 352 ~li~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 406 (493)
.+...|.+.|++++|.++|+.+... | ..+...+...+..++.+.|+.+....+--
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3445566666666666666665321 1 12233344455555555666555554433
No 455
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=40.56 E-value=59 Score=17.89 Aligned_cols=22 Identities=14% Similarity=0.425 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHH
Q 011137 398 IERGLELFEKMGSGVCLPNLDTYN 421 (493)
Q Consensus 398 ~~~a~~~~~~~~~~~~~p~~~~~~ 421 (493)
++.|..+|+.... +.|++.+|.
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHH
Confidence 4555555555554 235555444
No 456
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=40.28 E-value=89 Score=20.63 Aligned_cols=49 Identities=10% Similarity=-0.000 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSA 151 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (493)
....++.+++..++..-.+.++..+.+..+.|. .+..+|..-++.+++.
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 444566666666666666666666666666654 4556666666555543
No 457
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=40.14 E-value=2.4e+02 Score=26.07 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 011137 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426 (493)
Q Consensus 384 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 426 (493)
-|-+++......|.++..+.+|++++..|..|-...-..+++.
T Consensus 142 YWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~di 184 (353)
T PF15297_consen 142 YWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDI 184 (353)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 3444555555555555555555555555555544444444443
No 458
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.04 E-value=1.4e+02 Score=21.63 Aligned_cols=29 Identities=21% Similarity=0.159 Sum_probs=16.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhcCCC
Q 011137 176 FNTILDLLCKEKKVEKAYNLFKVFRGKFK 204 (493)
Q Consensus 176 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 204 (493)
...|.-.|.+.|+.+.|.+-|+.-+..+|
T Consensus 75 HAhLGlLys~~G~~e~a~~eFetEKalFP 103 (121)
T COG4259 75 HAHLGLLYSNSGKDEQAVREFETEKALFP 103 (121)
T ss_pred HHHHHHHHhhcCChHHHHHHHHHhhhhCc
Confidence 34445556666666666666655444443
No 459
>PF06855 DUF1250: Protein of unknown function (DUF1250); InterPro: IPR023089 This entry represents the YozE-like domain found in a group of proteins of unknown function.; PDB: 2KVS_A 2FJ6_A 2O6K_B.
Probab=39.48 E-value=46 Score=20.10 Aligned_cols=41 Identities=15% Similarity=0.166 Sum_probs=27.9
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 011137 90 FNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMK 130 (493)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 130 (493)
.+++.....+|-....+..+.+.+...+....++.++++..
T Consensus 2 A~~i~~D~~FPK~~~~~~eI~~Yle~~~~~~~~~~~fd~aw 42 (46)
T PF06855_consen 2 ANDIFQDHSFPKQETDFDEISSYLESNYDYLESMEIFDRAW 42 (46)
T ss_dssp HHHHHTSTTS-TT-SSHHHHHHHHHCHCCHHCCHHHHHHHH
T ss_pred hhhhhhCcCCCCCCCCHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 45666666778888888888888887777766666666543
No 460
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.44 E-value=5.8e+02 Score=28.15 Aligned_cols=185 Identities=13% Similarity=0.088 Sum_probs=0.0
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--------------------------
Q 011137 116 LRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC-------------------------- 169 (493)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------------------------- 169 (493)
+.++....+............+...--.+..+|...|...+|+..|.+....-.
T Consensus 898 ~cqy~~lqdy~~llh~wc~vlk~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s 977 (1480)
T KOG4521|consen 898 QCQYKVLQDYLNLLHSWCRVLKPVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPS 977 (1480)
T ss_pred chhHHHHHHHHHHhhhhhhhhHHHHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCC
Q ss_pred CCC--HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcch----HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 011137 170 RQS--LNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVIS----YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243 (493)
Q Consensus 170 ~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 243 (493)
++. ...|..+++.+-+.+-.+.+.++-....+..+++..+ ++.+.+.....|.+.+|.+.+-.-.+ ...-..
T Consensus 978 ~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd--serrrd 1055 (1480)
T KOG4521|consen 978 EELTALHYYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD--SERRRD 1055 (1480)
T ss_pred chHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc--HHHHHH
Q ss_pred HHHHHHHHHHhcCCHH------------HHHH-HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 011137 244 TYNIVLKGYFRAGQIE------------EAWR-FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302 (493)
Q Consensus 244 ~~~~l~~~~~~~g~~~------------~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 302 (493)
....++..++.+|+++ +... +++...+.........|+.|-..+...+++.+|-.+.-+
T Consensus 1056 cLRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYE 1127 (1480)
T KOG4521|consen 1056 CLRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYE 1127 (1480)
T ss_pred HHHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHH
No 461
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=38.36 E-value=2e+02 Score=26.01 Aligned_cols=73 Identities=12% Similarity=0.266 Sum_probs=56.5
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh----------cCCHHHH
Q 011137 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD----------AGEIERG 401 (493)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~a 401 (493)
.++++.+.+.++.|.-..+..+.-.+.+.=.+...+.+|+.+... ..-|..|+..||. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 467888888899999888888888888888889999999998864 2235566665553 5889888
Q ss_pred HHHHHHHh
Q 011137 402 LELFEKMG 409 (493)
Q Consensus 402 ~~~~~~~~ 409 (493)
+++++.-.
T Consensus 338 mkLLQ~yp 345 (370)
T KOG4567|consen 338 MKLLQNYP 345 (370)
T ss_pred HHHHhcCC
Confidence 88887654
No 462
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=38.26 E-value=4.8e+02 Score=27.13 Aligned_cols=21 Identities=10% Similarity=0.031 Sum_probs=15.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhc
Q 011137 464 GLLLIGNQGLAKEILRLQSRC 484 (493)
Q Consensus 464 ~~~~~g~~~~a~~~~~~~~~~ 484 (493)
+-.-++++..|.+..++|.|.
T Consensus 375 asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 375 ASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred hhhhccCHHHHHHHHHHHhcc
Confidence 334477888888888888775
No 463
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=38.25 E-value=5e+02 Score=27.30 Aligned_cols=362 Identities=10% Similarity=0.060 Sum_probs=179.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER---YVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 178 (493)
+...+..+|..+.+.|++++....-..|...- +.++..|..-+.. ....++...+..+|++....- .++..|.-
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy--~~v~iw~e 188 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY--NSVPIWEE 188 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc--ccchHHHH
Confidence 56678889999999999998888888887763 3556666554443 333467788888888877543 33344444
Q ss_pred HHHHH-------HccCCHHHHHHHHHHhhcC----CCCCcchHH---HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 011137 179 ILDLL-------CKEKKVEKAYNLFKVFRGK----FKADVISYN---VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244 (493)
Q Consensus 179 ll~~~-------~~~g~~~~A~~~~~~~~~~----~~~~~~~~~---~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 244 (493)
.++-+ .+.++++....+|.+.... ...-...|. -+-..|..+-..+....++..-...+. |..+
T Consensus 189 ~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~--D~~~ 266 (881)
T KOG0128|consen 189 VVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPL--DEDT 266 (881)
T ss_pred HHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccc--hhhh
Confidence 44333 2346677777777766532 111112232 233344445555667777766665542 3322
Q ss_pred HHHHHHHHHh-------cCCHHHHHHH-------HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 011137 245 YNIVLKGYFR-------AGQIEEAWRF-------FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310 (493)
Q Consensus 245 ~~~l~~~~~~-------~g~~~~a~~~-------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 310 (493)
-+.-..--.+ ..+++.+.+- +++..+. ..+--..|..+++...+.|+.-....+++++....+ .
T Consensus 267 ~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~-~ 344 (881)
T KOG0128|consen 267 RGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMV-L 344 (881)
T ss_pred hHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhcc-c
Confidence 2211111111 1223333322 2222222 222345567777778888877666555555543211 1
Q ss_pred CHHH---------------------HHHHHH--------------HHHhcCC-HHHHHHHHHHHHhCCCCCChhhHHHHH
Q 011137 311 SVAT---------------------YNAMIQ--------------VLCKKDS-VENAILVFEEMVGKGYMPNSTTYNVVI 354 (493)
Q Consensus 311 ~~~~---------------------~~~li~--------------~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li 354 (493)
+... +..-++ ++.+.+. .......+......++. -...|....
T Consensus 345 ~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~-l~~~~~~~r 423 (881)
T KOG0128|consen 345 DRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVE-LHNDYLAYR 423 (881)
T ss_pred cHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 1111 111111 1111111 01111111111111100 000111111
Q ss_pred HHHHhc----------CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHhcCCCCCCHH-HHHH
Q 011137 355 RGLCHT----------GEMERALEFVGRMKDDECEPNVQTYNILIRYF-CDAGEIERGLELFEKMGSGVCLPNLD-TYNI 422 (493)
Q Consensus 355 ~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~ 422 (493)
.-|.+. ..+..|...|.........+...+........ .-+++.+.++.+|+.....|.. +.. .|..
T Consensus 424 r~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~-~iag~Wle 502 (881)
T KOG0128|consen 424 RRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGG-SIAGKWLE 502 (881)
T ss_pred HhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcc-hHHHHHHH
Confidence 111111 12344455555444432233333333333333 3468899999999998887433 333 5666
Q ss_pred HHHHHhccCCcccHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHH
Q 011137 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR--KFTFNRVLNGLLLIGNQGLAK 475 (493)
Q Consensus 423 li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~ 475 (493)
.++.=...|+... +..+++.....-..|+ ..++..+.+--...|.++...
T Consensus 503 ~~~lE~~~g~~~~---~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~ 554 (881)
T KOG0128|consen 503 AINLEREYGDGPS---ARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFD 554 (881)
T ss_pred HHhHHHHhCCchh---HHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHh
Confidence 6666667788888 7788888776655564 334444444444566666543
No 464
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=37.66 E-value=1e+02 Score=20.85 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=10.4
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHH
Q 011137 190 EKAYNLFKVFRGKFKADVISYNVIAN 215 (493)
Q Consensus 190 ~~A~~~~~~~~~~~~~~~~~~~~l~~ 215 (493)
+.|..++..++...+..+..||++.+
T Consensus 14 EmA~~mL~DLr~dekRsPQLYnAI~k 39 (82)
T PF11123_consen 14 EMAQQMLADLRDDEKRSPQLYNAIGK 39 (82)
T ss_pred HHHHHHHHHhcchhhcChHHHHHHHH
Confidence 33444444443333334444444433
No 465
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=37.33 E-value=3.7e+02 Score=25.58 Aligned_cols=105 Identities=15% Similarity=0.139 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 011137 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG 216 (493)
Q Consensus 137 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 216 (493)
+..+...++.. ..|+...++..++.+.... +++. . . ..+...+++++-...+..+-..+..++++
T Consensus 191 ~~~a~~~l~~~--s~GD~R~aLN~LE~~~~~~-~~~~-~----------~-~~~~l~~~l~~~~~~~Dk~gD~hYdliSA 255 (436)
T COG2256 191 DEEALDYLVRL--SNGDARRALNLLELAALSA-EPDE-V----------L-ILELLEEILQRRSARFDKDGDAHYDLISA 255 (436)
T ss_pred CHHHHHHHHHh--cCchHHHHHHHHHHHHHhc-CCCc-c----------c-CHHHHHHHHhhhhhccCCCcchHHHHHHH
Confidence 45555555543 3678888877777666432 1221 0 0 12333333333333344565666677777
Q ss_pred HHh---cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011137 217 WCL---VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256 (493)
Q Consensus 217 ~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 256 (493)
+.+ ..+.+.|+-++-+|++.|-.|-...-..++-++-.-|
T Consensus 256 ~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 256 LHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred HHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 665 4678888888888888887665555555555544444
No 466
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=37.03 E-value=1.7e+02 Score=21.68 Aligned_cols=80 Identities=13% Similarity=0.058 Sum_probs=38.5
Q ss_pred hChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011137 81 NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160 (493)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 160 (493)
+...+|..+.+|+...++. ...+--..+..+.+.|+|++| +..- .....||...|..+. -.+.|-.+++...
T Consensus 20 HcH~EA~tIa~wL~~~~~~--~E~v~lIr~~sLmNrG~Yq~A--Ll~~--~~~~~pdL~p~~AL~--a~klGL~~~~e~~ 91 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGEM--EEVVALIRLSSLMNRGDYQEA--LLLP--QCHCYPDLEPWAALC--AWKLGLASALESR 91 (116)
T ss_dssp T-HHHHHHHHHHHHHTTTT--HHHHHHHHHHHHHHTT-HHHH--HHHH--TTS--GGGHHHHHHH--HHHCT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcH--HHHHHHHHHHHHHhhHHHHHH--HHhc--ccCCCccHHHHHHHH--HHhhccHHHHHHH
Confidence 4567777777777665421 111222223456667777777 1111 112235555554443 3456666666666
Q ss_pred HHHHHhCC
Q 011137 161 FLSMHEHG 168 (493)
Q Consensus 161 ~~~~~~~~ 168 (493)
+.++...|
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
Confidence 66665544
No 467
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=36.72 E-value=1.2e+02 Score=19.75 Aligned_cols=17 Identities=24% Similarity=0.143 Sum_probs=7.5
Q ss_pred hcCCHHHHHHHHHHHHh
Q 011137 324 KKDSVENAILVFEEMVG 340 (493)
Q Consensus 324 ~~~~~~~a~~~~~~~~~ 340 (493)
+.|++-+|-++++++-.
T Consensus 11 n~g~f~EaHEvlE~~W~ 27 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWK 27 (62)
T ss_dssp HTT-HHHHHHHHHHHCC
T ss_pred cCCCHHHhHHHHHHHHH
Confidence 34444444444444443
No 468
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=36.58 E-value=1.5e+02 Score=22.12 Aligned_cols=48 Identities=8% Similarity=0.036 Sum_probs=27.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCccc
Q 011137 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435 (493)
Q Consensus 388 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 435 (493)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|-...
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 344444445555667777777666555565555555556666555443
No 469
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=36.54 E-value=1.1e+02 Score=23.69 Aligned_cols=23 Identities=22% Similarity=0.157 Sum_probs=12.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCC
Q 011137 464 GLLLIGNQGLAKEILRLQSRCGR 486 (493)
Q Consensus 464 ~~~~~g~~~~a~~~~~~~~~~g~ 486 (493)
-+...|+++.|..+.+.+.++|.
T Consensus 57 W~~D~Gd~~~AL~~a~yAi~~~l 79 (132)
T PF05944_consen 57 WLFDVGDFDGALDIAEYAIEHGL 79 (132)
T ss_pred hhhcccCHHHHHHHHHHHHHcCC
Confidence 34455566666665555555553
No 470
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=35.68 E-value=2.8e+02 Score=23.70 Aligned_cols=51 Identities=14% Similarity=0.006 Sum_probs=30.1
Q ss_pred HHHHHHHHHHCCCC----CCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCCc
Q 011137 439 AGKLLIEMVDRGFM----PRKFTFNRVLN-GLLLIGNQGLAKEILRLQSRCGRLPR 489 (493)
Q Consensus 439 A~~~~~~m~~~g~~----p~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~g~~~~ 489 (493)
|.+.|.+..+..-. -+..+...|+. ...+.|+.++|.+.+..+...+....
T Consensus 144 Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 144 ALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 55566665544212 12333444443 55678888888888888777665443
No 471
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.25 E-value=4.5e+02 Score=25.89 Aligned_cols=125 Identities=10% Similarity=0.019 Sum_probs=0.0
Q ss_pred cchhccCCCCCCCHHHHHHHHHHHhhChHHHHHHHHHhhcCCCCCCCHHHHHHHHH-----------HHHhcCChHHHHH
Q 011137 56 LTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAID-----------LAARLRDYRTVWT 124 (493)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~-----------~~~~~~~~~~a~~ 124 (493)
+.......+..+++..+..++.....+...++...+.+....+-.-+......++. -..+.++++.|..
T Consensus 185 L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l~~~~~~~i~~li~si~~~d~~~Al~ 264 (472)
T PRK14962 185 LQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEALGLIPIEVVRDYINAIFNGDVKRVFT 264 (472)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHH
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH------HHHHHHHHHHhCCCCCCHHHHHHHH
Q 011137 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKAD------RAVKIFLSMHEHGCRQSLNSFNTIL 180 (493)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~ll 180 (493)
++..|...|..|....-..+..++-.-|.-+ .+..+++...+.|.+........++
T Consensus 265 ~l~~ll~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~~~i~~~e~~~~l~~~~ 326 (472)
T PRK14962 265 VLDDVYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNILREIKFAEEKRLVCKLG 326 (472)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhCCcchHHHHHHHH
No 472
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=34.68 E-value=1.5e+02 Score=22.36 Aligned_cols=45 Identities=16% Similarity=0.056 Sum_probs=27.9
Q ss_pred HHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 011137 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470 (493)
Q Consensus 423 li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 470 (493)
++..+...+..-. |.++++.+.+.|...+..|...-+..+.+.|-
T Consensus 13 Il~~l~~~~~~~t---a~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 13 ILELLKESPEHLT---AEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHSSSEE---HHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCCCCC---HHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 4444444444555 77888888877777777776666666666653
No 473
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=34.65 E-value=4e+02 Score=25.09 Aligned_cols=210 Identities=8% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH---hCCCCCCHHHH--------
Q 011137 177 NTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV---DRGLNPNLTTY-------- 245 (493)
Q Consensus 177 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~---~~g~~p~~~~~-------- 245 (493)
......+...+|.+.-..++++ .|-.+.++..+...+...|+.+.|.+++++.. +....|.-..+
T Consensus 14 q~~F~~~v~~~Dp~~l~~ll~~----~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~ 89 (360)
T PF04910_consen 14 QEQFYAAVQSHDPNALINLLQK----NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGN 89 (360)
T ss_pred HHHHHHHHHccCHHHHHHHHHH----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc
Q ss_pred -----------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCCHHHHHHHHHHHHH--
Q 011137 246 -----------------NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF-GVVGEIKRARNVFDGMVN-- 305 (493)
Q Consensus 246 -----------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~~~~-- 305 (493)
-.-|..+.+.|.+..|.++.+-+...+..-|+.....+|+.| .+.++++--+++.+....
T Consensus 90 ~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~ 169 (360)
T PF04910_consen 90 CRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKC 169 (360)
T ss_pred cccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhh
Q ss_pred CCC---CCCHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011137 306 GGV---LPSVATYNAMIQVLCKKDS--------------VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALE 368 (493)
Q Consensus 306 ~~~---~~~~~~~~~li~~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 368 (493)
... ...-..|+..+..+...+. .+.|...+.+.... -+.....|+..+.-..+..-...
T Consensus 170 ~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~----fP~vl~~Ll~~l~~~~~~~~~~~ 245 (360)
T PF04910_consen 170 YRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILR----FPWVLVPLLDKLGISPDSSVSNH 245 (360)
T ss_pred hhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHH----hHHHHHHHHHHhccccchhhhcC
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHh
Q 011137 369 FVGRMKDDECEPNVQTYNILIRYFCD 394 (493)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~l~~~~~~ 394 (493)
-.-.-...+..+.......++..|..
T Consensus 246 ~~~~~~~~~~~~~~~~~~ll~~lYv~ 271 (360)
T PF04910_consen 246 PHFSPSSWSSEPPSDSLKLLTELYVE 271 (360)
T ss_pred CCCcccccccCCchhHHHHHHHHHHH
No 474
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=34.55 E-value=1.8e+02 Score=23.65 Aligned_cols=45 Identities=9% Similarity=0.097 Sum_probs=22.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 011137 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAG 152 (493)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 152 (493)
.++..+...++.-.|.++++.+.+.+...+..|....+..+.+.|
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 333444444445555556666655555445555444455555444
No 475
>PF00772 DnaB: DnaB-like helicase N terminal domain; InterPro: IPR007693 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This N-terminal domain is required both for interaction with other proteins in the primosome and for DnaB helicase activity. This domain has a multi-helical structure that forms an orthogonal bundle [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1B79_D 1JWE_A 3GXV_C 3BGW_C 2R6D_B 2R6C_D 2R6E_B 2R6A_A 2VYE_A 2VYF_B ....
Probab=34.24 E-value=1.6e+02 Score=21.26 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=9.2
Q ss_pred HHHHHhhChHHHHHHHHHhhc
Q 011137 75 IIKRLWNHALKALHFFNILSY 95 (493)
Q Consensus 75 ~l~~~~~~~~~A~~~~~~~~~ 95 (493)
+|..+-.+++.+.++.+++..
T Consensus 12 lL~~lL~~~~~~~~i~~~L~~ 32 (103)
T PF00772_consen 12 LLGALLNDPEAIDEIIDKLSP 32 (103)
T ss_dssp HHHHHHHSCCHHHHHHTT-SG
T ss_pred HHHHHHcChHHHHHHhccCCH
Confidence 333344444455555555533
No 476
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.18 E-value=3.2e+02 Score=23.94 Aligned_cols=100 Identities=13% Similarity=-0.036 Sum_probs=0.0
Q ss_pred HHccCCHHHHHHHHHHh------------------hcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 011137 183 LCKEKKVEKAYNLFKVF------------------RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244 (493)
Q Consensus 183 ~~~~g~~~~A~~~~~~~------------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 244 (493)
+.+.|++.+|..-|.+. .+-..-....+..+..++...|++-++++.-.+....... ++.+
T Consensus 188 lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~-nvKA 266 (329)
T KOG0545|consen 188 LFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPG-NVKA 266 (329)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCc-hHHH
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011137 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI 283 (493)
Q Consensus 245 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 283 (493)
|..-..+.+..-+.++|..-|..+.+.....-..+-.-|
T Consensus 267 ~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrEl 305 (329)
T KOG0545|consen 267 YFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSREL 305 (329)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHH
No 477
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.15 E-value=4.7e+02 Score=25.78 Aligned_cols=42 Identities=5% Similarity=-0.028 Sum_probs=26.7
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 011137 88 HFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKS 131 (493)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 131 (493)
+....+....+...+......++. ...|+...|+.+++++..
T Consensus 187 ~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~ 228 (484)
T PRK14956 187 DYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIV 228 (484)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHH
Confidence 334444333455667777666654 346889999999888654
No 478
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=33.72 E-value=3.6e+02 Score=24.30 Aligned_cols=69 Identities=16% Similarity=0.150 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 011137 347 STTYNVVIRGLCHTGEMERALEFVGRMKDD----ECEPNVQTYN-ILIRYFCDAGEIERGLELFEKMGSGVCLP 415 (493)
Q Consensus 347 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 415 (493)
...+..+...|++.++.+.+.++..+..+. |.+.|..... .|.-.|....-+++-++..+.|.++|...
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDW 188 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDW 188 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCH
Confidence 344555555666666665555555443322 4444432221 12222333333455555555555555443
No 479
>PRK12798 chemotaxis protein; Reviewed
Probab=33.27 E-value=4.4e+02 Score=25.20 Aligned_cols=221 Identities=12% Similarity=0.066 Sum_probs=130.9
Q ss_pred HccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHH--hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHH
Q 011137 184 CKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWC--LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF-RAGQIEE 260 (493)
Q Consensus 184 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~-~~g~~~~ 260 (493)
..-|+.+....++..-.. ...=+.++.+.. -.|+.+++.+.+..+......+....|..|+.+-. ...+..+
T Consensus 92 lSGGnP~vlr~L~~~d~~-----~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~ 166 (421)
T PRK12798 92 LSGGNPATLRKLLARDKL-----GNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPAT 166 (421)
T ss_pred hcCCCHHHHHHHHHcCCC-----ChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHH
Confidence 445677666555443221 122233443333 37999999999999987777777777877776654 4568999
Q ss_pred HHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCC---HHHHH
Q 011137 261 AWRFFLEMKKR--KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVA---TYNAMIQVLCKKDS---VENAI 332 (493)
Q Consensus 261 a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~---~~~a~ 332 (493)
|+++|+...-. |.-.......--+......|+.+++..+-.+.... +..+++ .+..+..++.+.++ .+.-.
T Consensus 167 Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rR-F~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~ 245 (421)
T PRK12798 167 ALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRR-FRHSPYASQFAQRFVDLVVRLDDEIRDARLV 245 (421)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHH-hccCchHHHHHHHHHHHHHhccccccHHHHH
Confidence 99999987654 22222333444455678889998877766555443 112222 23334444444443 33333
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH-----HhcCCHHHHHHHHHH
Q 011137 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF-----CDAGEIERGLELFEK 407 (493)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~a~~~~~~ 407 (493)
.++..|.. .--...|..+.+.-.-.|+.+.|.-.-++.....-..+. -...+..| .-..+++++.+.+..
T Consensus 246 ~~ls~~d~---~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~--~~~ra~LY~aaa~v~s~~~~~al~~L~~ 320 (421)
T PRK12798 246 EILSFMDP---ERQRELYLRIARAALIDGKTELARFASERALKLADPDSA--DAARARLYRGAALVASDDAESALEELSQ 320 (421)
T ss_pred HHHHhcCc---hhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCc--chHHHHHHHHHHccCcccHHHHHHHHhc
Confidence 33333322 123467888888888999999998888888766312111 11122222 234568888888887
Q ss_pred HhcCCCCC
Q 011137 408 MGSGVCLP 415 (493)
Q Consensus 408 ~~~~~~~p 415 (493)
+......+
T Consensus 321 I~~~~L~~ 328 (421)
T PRK12798 321 IDRDKLSE 328 (421)
T ss_pred CChhhCCh
Confidence 77655544
No 480
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=33.25 E-value=2.2e+02 Score=21.84 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=17.6
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 011137 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF 199 (493)
Q Consensus 162 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 199 (493)
..+.+.++......+.-+=..|.+-.+..+|..+|+.+
T Consensus 87 ~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kll 124 (126)
T PF10155_consen 87 QSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLL 124 (126)
T ss_pred HHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHH
Confidence 33444444333333444444444445555555555543
No 481
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.23 E-value=3.9e+02 Score=28.30 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=27.7
Q ss_pred HCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 011137 448 DRGFMPRK--FTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488 (493)
Q Consensus 448 ~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~ 488 (493)
...++|-. .+....+..+.+.+++..|-.+...+.+.+-.|
T Consensus 1075 ~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~ 1117 (1202)
T KOG0292|consen 1075 HCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSP 1117 (1202)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC
Confidence 33455553 345566778888888888888777777766544
No 482
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=33.23 E-value=1.4e+02 Score=28.67 Aligned_cols=105 Identities=14% Similarity=0.025 Sum_probs=69.1
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 011137 180 LDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259 (493)
Q Consensus 180 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 259 (493)
..-+.+.++++.|..++.+.....+..+..|..-..++.+.+++..|+.=+.++++..+. -...|..-..++.+.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHHHH
Confidence 344566788889998888877765555566666668888999999998888887775422 2233444445556666777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011137 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGF 287 (493)
Q Consensus 260 ~a~~~~~~~~~~~~~~~~~~~~~li~~~ 287 (493)
+|...|+..... .|+..-....+.-|
T Consensus 90 ~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 90 KALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 777777776654 45555444444443
No 483
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=33.02 E-value=6e+02 Score=26.71 Aligned_cols=166 Identities=13% Similarity=0.086 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHhh--------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-----------HHHHH
Q 011137 118 DYRTVWTLVHRMKS--------LSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL-----------NSFNT 178 (493)
Q Consensus 118 ~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----------~~~~~ 178 (493)
+.+....+++.... .++..+..+...++... .|+..+++.+++.+......... .....
T Consensus 169 s~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~ 246 (725)
T PRK13341 169 SDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQQ 246 (725)
T ss_pred CHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHHH
Q ss_pred HHHHHHccCC--HHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011137 179 ILDLLCKEKK--VEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256 (493)
Q Consensus 179 ll~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 256 (493)
....|-+.|+ ++....+.+.+... +++.|+.++.+|.+.|..|....-..++.+.-.-|
T Consensus 247 ~~~~ydk~gd~hyd~Isa~~ksirgs-------------------D~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdig 307 (725)
T PRK13341 247 RAVLYDKEGDAHFDTISAFIKSLRGS-------------------DPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVG 307 (725)
T ss_pred hhhhcccCCCCCHHHHHHHHHHHhcC-------------------CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Q ss_pred -----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011137 257 -----QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305 (493)
Q Consensus 257 -----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 305 (493)
...-|...+......|.+-.........-.++..-+...+ ..+++..+
T Consensus 308 ladp~al~~~~~~~~a~~~~g~pE~~~~laq~~~~la~apKSns~-~a~~~a~~ 360 (725)
T PRK13341 308 LADPQALVVVEACAAAFERVGLPEGLYPLAQAALYLATAPKSNSV-LGFFDALK 360 (725)
T ss_pred CCChHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHcCCCccHH-HHHHHHHH
No 484
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=32.71 E-value=3.2e+02 Score=23.52 Aligned_cols=19 Identities=32% Similarity=0.365 Sum_probs=8.5
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 011137 250 KGYFRAGQIEEAWRFFLEM 268 (493)
Q Consensus 250 ~~~~~~g~~~~a~~~~~~~ 268 (493)
......|+.++|++....+
T Consensus 72 r~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 72 RRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHHhccHHHHHHHHHHh
Confidence 3334444444444444443
No 485
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=32.54 E-value=3e+02 Score=23.06 Aligned_cols=25 Identities=8% Similarity=0.179 Sum_probs=18.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 011137 247 IVLKGYFRAGQIEEAWRFFLEMKKR 271 (493)
Q Consensus 247 ~l~~~~~~~g~~~~a~~~~~~~~~~ 271 (493)
+++..|.+..++.+..++++.|.+.
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777888888888777665
No 486
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=32.22 E-value=3.4e+02 Score=23.62 Aligned_cols=40 Identities=8% Similarity=0.079 Sum_probs=17.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011137 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287 (493)
Q Consensus 248 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 287 (493)
++..+-+.|+++++.+.++++...+...+..-.+.+..+|
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 3444444555555555555555544444444444444443
No 487
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=32.16 E-value=6e+02 Score=26.43 Aligned_cols=197 Identities=12% Similarity=0.137 Sum_probs=94.6
Q ss_pred HHHHHHHHHhhChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh-hCCCCCCHHHHHHHHHHHH
Q 011137 71 LVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMK-SLSLGPTQKTFAIIAERYV 149 (493)
Q Consensus 71 ~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~ 149 (493)
.+..++..+|..-..++...+.+-+...++....+--.+-.+|.-.|++++|+..--... ...+.++...+..++.-|.
T Consensus 27 ~in~vVd~~WpEIsd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~i 106 (929)
T KOG2062|consen 27 KINNVVDQFWPEISDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCI 106 (929)
T ss_pred HHHHHHHHhhHHhhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHH
Confidence 345555566666566677777776666554222222334467888899999887654432 2234555666666555443
Q ss_pred HcCCHHHHHHHHHHHH-hCCCCCCH-HHHHHHHHHHHccCCHHHHHHH---------HHHhhcCCCCCcchHHHHHHHHH
Q 011137 150 SAGKADRAVKIFLSMH-EHGCRQSL-NSFNTILDLLCKEKKVEKAYNL---------FKVFRGKFKADVISYNVIANGWC 218 (493)
Q Consensus 150 ~~g~~~~a~~~~~~~~-~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~~---------~~~~~~~~~~~~~~~~~l~~~~~ 218 (493)
.. -.+.+.+.++.-. ..++.+.. ...+.++..|...+++..|+.+ +++..-.........+.++..+.
T Consensus 107 d~-yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d~~~~~~~yll~l~~ 185 (929)
T KOG2062|consen 107 DM-YIETASETYKNPEQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEAILKSDSVIGNLTYLLELLI 185 (929)
T ss_pred HH-HHHHHHHHhcCccccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHHhccccccchHHHHHHHHHH
Confidence 22 1122333332111 11111111 1233444444444444444333 22211001111223333333333
Q ss_pred hcCC-hhHHHHHHHHHH---hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011137 219 LVKR-TNKALEVLKEMV---DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271 (493)
Q Consensus 219 ~~~~-~~~A~~~~~~m~---~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 271 (493)
...+ .+--.++++.+. ..+..|| |..+..+|....+.+.+.++++.+.+.
T Consensus 186 s~v~~~efR~~vlr~lv~~y~~~~~PD---y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 186 SLVNNREFRNKVLRLLVKTYLKLPSPD---YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred HHHhhHHHHHHHHHHHHHHHccCCCCC---eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 3222 222233333333 3344554 345667777788888888888888774
No 488
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.93 E-value=5.4e+02 Score=25.82 Aligned_cols=91 Identities=14% Similarity=0.108 Sum_probs=50.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHhhhC---CCCCCHHHHHHHHHHHHhc
Q 011137 320 QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC-HTGEMERALEFVGRMKDD---ECEPNVQTYNILIRYFCDA 395 (493)
Q Consensus 320 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~ 395 (493)
..+.+.|.+..|.+.-+-+......-|+.....+|..|+ +..++.-.+++++..... ..-||..--.+|...|...
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~ 429 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRK 429 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhc
Confidence 345567777777777777776655446666666666654 456666666666665433 2234433333444444443
Q ss_pred CC---HHHHHHHHHHHhc
Q 011137 396 GE---IERGLELFEKMGS 410 (493)
Q Consensus 396 g~---~~~a~~~~~~~~~ 410 (493)
.. -+.|...+.++..
T Consensus 430 ~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 430 NEEDDRQSALNALLQALK 447 (665)
T ss_pred CChhhHHHHHHHHHHHHH
Confidence 33 3344545544443
No 489
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=31.59 E-value=2.1e+02 Score=21.06 Aligned_cols=22 Identities=14% Similarity=0.422 Sum_probs=11.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHh
Q 011137 352 VVIRGLCHTGEMERALEFVGRM 373 (493)
Q Consensus 352 ~li~~~~~~~~~~~a~~~~~~~ 373 (493)
.++..|...|+.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3444555556666666666554
No 490
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=31.57 E-value=2.1e+02 Score=21.05 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=9.3
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 011137 213 IANGWCLVKRTNKALEVLKEM 233 (493)
Q Consensus 213 l~~~~~~~~~~~~A~~~~~~m 233 (493)
++..|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 333444445555555444443
No 491
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=31.44 E-value=5.4e+02 Score=25.64 Aligned_cols=123 Identities=11% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCC
Q 011137 144 IAERYVSAGKADRAVKIFLSMH-EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKR 222 (493)
Q Consensus 144 l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 222 (493)
++.-|.+.++.++|+.++..|. ..--..--...+.+.+.+.+..--++.+..++.....+-.-.....-.+..-.+..=
T Consensus 414 L~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d~V 493 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRDPV 493 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011137 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272 (493)
Q Consensus 223 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 272 (493)
.+-|.++|..|.+. ..|..........|+.|--.+++......|
T Consensus 494 ~~~aRRfFhhLLR~------~rfekAFlLAvdi~~~DLFmdlh~~A~~~g 537 (545)
T PF11768_consen 494 SDLARRFFHHLLRY------QRFEKAFLLAVDIGDRDLFMDLHYLAKDKG 537 (545)
T ss_pred HHHHHHHHHHHHHh------hHHHHHHHHHHhccchHHHHHHHHHHHhcc
No 492
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=30.56 E-value=3e+02 Score=22.44 Aligned_cols=45 Identities=9% Similarity=0.052 Sum_probs=22.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 011137 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362 (493)
Q Consensus 318 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 362 (493)
++..+...++.-.|.++++.+.+.+...+..|....+..+.+.|-
T Consensus 31 IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 31 VLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 333333344455566666666655555555554444555555443
No 493
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=30.37 E-value=8.1e+02 Score=27.40 Aligned_cols=130 Identities=13% Similarity=0.130 Sum_probs=69.1
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHH-------HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C
Q 011137 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGM-------VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK-----G 342 (493)
Q Consensus 275 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~ 342 (493)
.....|..+...+.+.|+.++|+..=.+. ......-+...|..+...+...+....|...+...... |
T Consensus 971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~g 1050 (1236)
T KOG1839|consen 971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSG 1050 (1236)
T ss_pred hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccC
Confidence 35566777777788888888877664432 11112223344555554455555666666666555432 2
Q ss_pred -CCCChh-hHHHHHHHHHhcCCHHHHHHHHHHhhhC-----CC--CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011137 343 -YMPNST-TYNVVIRGLCHTGEMERALEFVGRMKDD-----EC--EPNVQTYNILIRYFCDAGEIERGLEL 404 (493)
Q Consensus 343 -~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~g~~~~a~~~ 404 (493)
..|... +++.+-..+...++.+.|.++.+.+... |. -.+..++..+...+...+++..|...
T Consensus 1051 e~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1051 EDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred CCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 133333 3333333333446777788777776553 10 12344555665555555555554433
No 494
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.00 E-value=97 Score=21.37 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=17.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC
Q 011137 463 NGLLLIGNQGLAKEILRLQSRCGRLP 488 (493)
Q Consensus 463 ~~~~~~g~~~~a~~~~~~~~~~g~~~ 488 (493)
.-+.++.-.++|+++++.+.+.|-+.
T Consensus 39 D~L~rCdT~EEAlEii~yleKrGEi~ 64 (98)
T COG4003 39 DFLRRCDTEEEALEIINYLEKRGEIT 64 (98)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhCCCC
Confidence 33555666777777777777777544
No 495
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=29.91 E-value=2.5e+02 Score=21.39 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=14.4
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 011137 464 GLLLIGNQGLAKEILRLQS 482 (493)
Q Consensus 464 ~~~~~g~~~~a~~~~~~~~ 482 (493)
++...|+.++|...|++..
T Consensus 109 Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 109 ALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHhcCChHHHHHHHHHHH
Confidence 6778999999999887543
No 496
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=29.86 E-value=3.6e+02 Score=23.09 Aligned_cols=26 Identities=8% Similarity=0.119 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcC
Q 011137 386 NILIRYFCDAGEIERGLELFEKMGSG 411 (493)
Q Consensus 386 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 411 (493)
-.+.....+.|+.++|.+.|.++...
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 34555556667777777777766654
No 497
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=29.76 E-value=4e+02 Score=23.63 Aligned_cols=26 Identities=15% Similarity=0.024 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHH
Q 011137 276 DVVTYTTIVHGFGVVGEIKRARNVFD 301 (493)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~ 301 (493)
++.....+...|.+.|++.+|+..|-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 56677777777888887777776663
No 498
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=29.75 E-value=2.3e+02 Score=21.17 Aligned_cols=35 Identities=6% Similarity=0.188 Sum_probs=20.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011137 144 IAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179 (493)
Q Consensus 144 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 179 (493)
++..+.++...++|+++++.|.+.| ..+...-+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eL 101 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKEL 101 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4555556666677777777776666 3444433333
No 499
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=29.70 E-value=3.3e+02 Score=22.94 Aligned_cols=49 Identities=12% Similarity=0.144 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHcCC
Q 011137 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQK-TFAIIAERYVSAGK 153 (493)
Q Consensus 104 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~ 153 (493)
...+.++..+...||++.|-++|.-+.+.. +.|.. .|..-+..+.+.+.
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~ 91 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGE 91 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCC
Confidence 356777777888888888888888877653 23432 34444444444433
No 500
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=29.12 E-value=2.1e+02 Score=20.22 Aligned_cols=41 Identities=7% Similarity=0.070 Sum_probs=20.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 011137 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303 (493)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 303 (493)
++|+-....|+..|+..|..+++.....=-++...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45555555555555555555555444444444444444444
Done!