Query 011137
Match_columns 493
No_of_seqs 709 out of 3148
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 21:34:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011137.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011137hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 9.1E-35 3.1E-39 291.2 39.5 400 72-485 87-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.6E-35 1.2E-39 294.2 35.7 373 101-485 82-546 (597)
3 4g26_A Pentatricopeptide repea 100.0 2.4E-31 8.2E-36 255.8 25.4 186 209-394 28-222 (501)
4 1w3b_A UDP-N-acetylglucosamine 100.0 4.5E-28 1.5E-32 229.2 47.3 377 79-470 11-388 (388)
5 4g26_A Pentatricopeptide repea 100.0 2.4E-31 8.3E-36 255.8 24.2 205 225-429 8-222 (501)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1.9E-28 6.5E-33 231.7 42.8 364 109-484 5-368 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 5.2E-24 1.8E-28 205.4 39.9 360 100-474 23-444 (450)
8 2gw1_A Mitochondrial precursor 99.9 2.7E-24 9.2E-29 211.0 35.8 392 80-485 19-479 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 4.4E-23 1.5E-27 198.9 35.0 314 136-462 24-370 (450)
10 2gw1_A Mitochondrial precursor 99.9 2.1E-22 7.1E-27 197.6 35.9 365 80-458 52-485 (514)
11 3fp2_A TPR repeat-containing p 99.9 1.1E-21 3.8E-26 193.6 38.5 387 81-485 39-492 (537)
12 3ieg_A DNAJ homolog subfamily 99.9 1.7E-20 5.9E-25 174.7 37.6 302 102-410 2-334 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 3.8E-20 1.3E-24 172.4 37.5 319 137-466 2-351 (359)
14 3fp2_A TPR repeat-containing p 99.9 2.5E-20 8.7E-25 183.8 36.3 355 79-449 71-491 (537)
15 3hym_B Cell division cycle pro 99.9 4.7E-20 1.6E-24 169.7 32.2 292 137-434 21-322 (330)
16 3hym_B Cell division cycle pro 99.9 1.3E-19 4.3E-24 166.9 32.2 294 100-399 19-322 (330)
17 2xm6_A Protein corresponding t 99.9 2.8E-17 9.7E-22 159.8 49.9 352 102-485 38-433 (490)
18 1fch_A Peroxisomal targeting s 99.9 9.6E-20 3.3E-24 170.5 24.3 256 151-410 38-313 (368)
19 1fch_A Peroxisomal targeting s 99.9 1.9E-19 6.6E-24 168.4 24.9 311 151-480 14-355 (368)
20 2xm6_A Protein corresponding t 99.8 1.4E-16 4.8E-21 154.9 45.1 339 80-451 56-434 (490)
21 4eqf_A PEX5-related protein; a 99.8 1.7E-19 5.8E-24 168.7 21.4 269 205-480 63-352 (365)
22 4eqf_A PEX5-related protein; a 99.8 2.2E-18 7.7E-23 161.1 24.3 276 103-407 65-352 (365)
23 3cv0_A Peroxisome targeting si 99.8 5.4E-18 1.8E-22 155.7 25.8 280 102-408 20-312 (327)
24 3cv0_A Peroxisome targeting si 99.8 5.4E-18 1.8E-22 155.7 24.5 277 141-447 24-313 (327)
25 2ooe_A Cleavage stimulation fa 99.8 5.1E-16 1.8E-20 152.5 40.0 392 80-484 25-492 (530)
26 4g1t_A Interferon-induced prot 99.8 4.9E-16 1.7E-20 150.5 35.5 368 100-486 48-461 (472)
27 3mkr_A Coatomer subunit epsilo 99.8 4.5E-17 1.5E-21 146.3 26.1 252 111-376 7-264 (291)
28 1b89_A Protein (clathrin heavy 99.8 2.2E-18 7.6E-23 158.2 17.4 282 81-405 17-305 (449)
29 1b89_A Protein (clathrin heavy 99.8 3E-18 1E-22 157.3 16.2 280 114-435 14-300 (449)
30 3mkr_A Coatomer subunit epsilo 99.8 5.9E-17 2E-21 145.6 24.4 249 147-410 8-263 (291)
31 1xi4_A Clathrin heavy chain; a 99.8 3.7E-14 1.3E-18 145.3 43.0 361 66-488 982-1346(1630)
32 3spa_A Mtrpol, DNA-directed RN 99.7 1.8E-18 6.2E-23 171.3 9.2 116 312-427 127-246 (1134)
33 3spa_A Mtrpol, DNA-directed RN 99.7 2.4E-18 8.1E-23 170.5 9.9 115 173-287 127-246 (1134)
34 2ooe_A Cleavage stimulation fa 99.7 4.3E-14 1.5E-18 138.8 39.8 371 68-449 45-492 (530)
35 2pl2_A Hypothetical conserved 99.7 1.3E-15 4.6E-20 130.6 21.3 199 100-303 2-211 (217)
36 4g1t_A Interferon-induced prot 99.7 2E-14 6.9E-19 139.1 31.9 365 74-457 58-468 (472)
37 1xi4_A Clathrin heavy chain; a 99.7 4.4E-13 1.5E-17 137.5 41.5 290 138-469 1105-1415(1630)
38 3uq3_A Heat shock protein STI1 99.7 4.9E-15 1.7E-19 130.8 24.0 156 243-410 80-235 (258)
39 2pl2_A Hypothetical conserved 99.7 2.1E-15 7.2E-20 129.4 20.6 198 136-338 3-211 (217)
40 3uq3_A Heat shock protein STI1 99.7 6.6E-15 2.3E-19 130.0 23.7 223 140-376 7-236 (258)
41 3e4b_A ALGK; tetratricopeptide 99.7 1.5E-14 5.1E-19 138.6 25.3 376 78-483 14-420 (452)
42 1ouv_A Conserved hypothetical 99.7 3.5E-13 1.2E-17 120.2 32.0 224 206-450 5-252 (273)
43 2h6f_A Protein farnesyltransfe 99.7 2E-14 6.9E-19 133.4 24.5 218 102-325 96-322 (382)
44 3u4t_A TPR repeat-containing p 99.7 2.3E-14 8E-19 127.7 24.2 229 179-410 9-249 (272)
45 3u4t_A TPR repeat-containing p 99.7 2.4E-14 8.3E-19 127.5 24.2 244 139-388 4-261 (272)
46 1ouv_A Conserved hypothetical 99.7 1.9E-13 6.7E-18 121.8 29.9 222 173-411 6-251 (273)
47 2h6f_A Protein farnesyltransfe 99.7 4E-14 1.4E-18 131.5 26.1 250 138-394 97-365 (382)
48 3e4b_A ALGK; tetratricopeptide 99.7 1.7E-14 5.9E-19 138.1 23.8 352 108-487 8-390 (452)
49 1xnf_A Lipoprotein NLPI; TPR, 99.7 6.7E-15 2.3E-19 131.4 19.6 221 116-341 18-244 (275)
50 2ho1_A Type 4 fimbrial biogene 99.7 9.2E-14 3.1E-18 122.2 26.4 200 103-306 37-238 (252)
51 2ho1_A Type 4 fimbrial biogene 99.7 7.5E-14 2.6E-18 122.8 25.3 201 138-341 37-238 (252)
52 2vq2_A PILW, putative fimbrial 99.6 1.4E-13 4.7E-18 118.7 25.7 196 141-338 11-208 (225)
53 2vq2_A PILW, putative fimbrial 99.6 1.2E-13 4.3E-18 118.9 25.2 204 100-306 5-211 (225)
54 2q7f_A YRRB protein; TPR, prot 99.6 1.9E-14 6.4E-19 125.9 19.5 201 102-306 22-222 (243)
55 1xnf_A Lipoprotein NLPI; TPR, 99.6 4E-15 1.4E-19 132.8 15.5 59 176-234 46-104 (275)
56 2q7f_A YRRB protein; TPR, prot 99.6 2.8E-14 9.7E-19 124.7 19.7 121 181-303 31-151 (243)
57 3sf4_A G-protein-signaling mod 99.6 4.5E-14 1.5E-18 133.6 18.7 304 102-435 8-365 (406)
58 4a1s_A PINS, partner of inscut 99.6 4.2E-14 1.4E-18 134.2 18.4 279 103-410 48-371 (411)
59 3sf4_A G-protein-signaling mod 99.6 2.5E-14 8.6E-19 135.4 16.6 289 78-398 20-363 (406)
60 4a1s_A PINS, partner of inscut 99.6 4.2E-14 1.4E-18 134.2 17.1 265 79-376 60-372 (411)
61 3ro2_A PINS homolog, G-protein 99.6 1.1E-13 3.9E-18 127.0 17.3 275 105-411 7-332 (338)
62 3ro2_A PINS homolog, G-protein 99.6 1.1E-13 3.7E-18 127.2 16.9 274 141-449 8-332 (338)
63 2ond_A Cleavage stimulation fa 99.5 1.1E-11 3.7E-16 112.5 28.3 219 120-341 33-270 (308)
64 3vtx_A MAMA; tetratricopeptide 99.5 1.9E-12 6.5E-17 107.8 21.3 166 137-305 4-169 (184)
65 3ulq_A Response regulator aspa 99.5 1.4E-12 4.8E-17 122.5 21.8 294 113-410 22-367 (383)
66 2ond_A Cleavage stimulation fa 99.5 8.1E-12 2.8E-16 113.3 26.0 219 84-306 33-270 (308)
67 4abn_A Tetratricopeptide repea 99.5 1.1E-12 3.6E-17 126.5 20.5 221 154-405 84-315 (474)
68 3ulq_A Response regulator aspa 99.5 1.8E-12 6.2E-17 121.7 21.7 167 314-483 186-367 (383)
69 4abn_A Tetratricopeptide repea 99.5 9.5E-13 3.2E-17 126.8 19.4 215 119-338 84-318 (474)
70 3vtx_A MAMA; tetratricopeptide 99.5 5.4E-12 1.8E-16 105.0 21.6 168 101-271 3-170 (184)
71 4e6h_A MRNA 3'-END-processing 99.5 3E-10 1E-14 112.6 36.3 218 261-484 328-570 (679)
72 3nf1_A KLC 1, kinesin light ch 99.5 3.1E-13 1.1E-17 122.7 13.2 244 138-410 27-306 (311)
73 3nf1_A KLC 1, kinesin light ch 99.5 6.1E-13 2.1E-17 120.8 15.1 247 206-484 26-307 (311)
74 1hz4_A MALT regulatory protein 99.4 5E-11 1.7E-15 111.3 26.5 264 147-410 23-321 (373)
75 3q15_A PSP28, response regulat 99.4 1.3E-11 4.4E-16 115.6 22.0 232 248-483 107-364 (378)
76 3q15_A PSP28, response regulat 99.4 4.4E-11 1.5E-15 111.9 25.0 226 181-409 109-363 (378)
77 1hz4_A MALT regulatory protein 99.4 1.1E-10 3.9E-15 108.9 26.6 271 106-376 17-322 (373)
78 3as5_A MAMA; tetratricopeptide 99.4 3.4E-11 1.1E-15 100.0 19.3 25 209-233 78-102 (186)
79 3as5_A MAMA; tetratricopeptide 99.4 5.1E-11 1.7E-15 98.8 19.6 166 103-271 8-173 (186)
80 4gyw_A UDP-N-acetylglucosamine 99.4 2.2E-11 7.6E-16 122.1 19.0 164 138-304 9-172 (723)
81 4e6h_A MRNA 3'-END-processing 99.4 6.1E-09 2.1E-13 103.3 36.0 392 85-486 51-535 (679)
82 4gyw_A UDP-N-acetylglucosamine 99.4 2.1E-11 7.3E-16 122.2 18.6 169 100-271 6-174 (723)
83 4i17_A Hypothetical protein; T 99.3 2.9E-10 1E-14 98.0 21.6 206 101-318 5-220 (228)
84 4i17_A Hypothetical protein; T 99.3 3.3E-10 1.1E-14 97.7 21.1 197 136-342 5-210 (228)
85 3edt_B KLC 2, kinesin light ch 99.3 3.5E-11 1.2E-15 107.4 13.5 202 138-340 43-280 (283)
86 1qqe_A Vesicular transport pro 99.3 3.4E-10 1.2E-14 101.7 18.6 69 188-270 32-105 (292)
87 3edt_B KLC 2, kinesin light ch 99.2 8.2E-11 2.8E-15 104.9 13.9 225 151-376 14-281 (283)
88 3mv2_B Coatomer subunit epsilo 99.2 3.9E-09 1.3E-13 93.0 22.9 58 247-304 105-163 (310)
89 3qky_A Outer membrane assembly 99.2 1.4E-09 4.9E-14 95.8 18.4 212 100-330 12-250 (261)
90 1qqe_A Vesicular transport pro 99.2 3.4E-10 1.2E-14 101.6 14.5 132 209-340 119-268 (292)
91 3mv2_B Coatomer subunit epsilo 99.1 1.8E-08 6.1E-13 88.8 23.2 243 111-376 21-282 (310)
92 3dra_A Protein farnesyltransfe 99.1 6E-08 2.1E-12 86.3 26.9 216 156-375 51-286 (306)
93 3urz_A Uncharacterized protein 99.1 2E-09 6.9E-14 91.2 16.8 74 179-253 60-133 (208)
94 3qky_A Outer membrane assembly 99.1 1.9E-09 6.5E-14 95.0 17.2 209 136-366 13-251 (261)
95 2fo7_A Synthetic consensus TPR 99.1 3.1E-09 1.1E-13 82.7 16.5 129 105-235 3-131 (136)
96 2fo7_A Synthetic consensus TPR 99.1 3E-09 1E-13 82.7 16.3 127 141-269 4-130 (136)
97 2pzi_A Probable serine/threoni 99.1 9.2E-10 3.1E-14 110.9 16.4 171 114-289 402-580 (681)
98 3dra_A Protein farnesyltransfe 99.1 6.9E-08 2.4E-12 85.9 25.2 220 187-410 47-286 (306)
99 3urz_A Uncharacterized protein 99.1 5.6E-09 1.9E-13 88.4 16.9 174 103-282 4-195 (208)
100 2yhc_A BAMD, UPF0169 lipoprote 99.1 2E-08 6.7E-13 86.3 20.5 188 102-308 3-215 (225)
101 2pzi_A Probable serine/threoni 99.1 2.7E-09 9.2E-14 107.5 17.3 186 218-409 402-603 (681)
102 3rjv_A Putative SEL1 repeat pr 99.1 3.7E-08 1.3E-12 83.6 20.9 176 225-412 4-198 (212)
103 2yhc_A BAMD, UPF0169 lipoprote 99.1 2.5E-08 8.5E-13 85.6 20.0 188 137-343 3-215 (225)
104 4ga2_A E3 SUMO-protein ligase 99.0 1E-09 3.5E-14 87.5 10.2 107 186-294 10-116 (150)
105 2r5s_A Uncharacterized protein 99.0 4E-09 1.4E-13 86.7 13.8 54 110-164 13-66 (176)
106 3qou_A Protein YBBN; thioredox 99.0 7.6E-09 2.6E-13 92.5 16.6 165 137-303 116-281 (287)
107 4ga2_A E3 SUMO-protein ligase 99.0 8.4E-10 2.9E-14 88.0 8.8 140 149-291 8-148 (150)
108 2r5s_A Uncharacterized protein 99.0 3.4E-09 1.2E-13 87.2 12.5 61 277-337 108-169 (176)
109 3rjv_A Putative SEL1 repeat pr 99.0 1.1E-07 3.6E-12 80.8 20.2 128 102-236 17-158 (212)
110 2vsy_A XCC0866; transferase, g 99.0 1.6E-08 5.4E-13 100.1 17.3 163 116-282 2-167 (568)
111 3qou_A Protein YBBN; thioredox 99.0 1.3E-08 4.5E-13 90.9 15.1 167 170-339 114-282 (287)
112 2vsy_A XCC0866; transferase, g 99.0 1.6E-08 5.6E-13 99.9 17.1 155 81-239 3-160 (568)
113 2uy1_A Cleavage stimulation fa 98.9 2.2E-06 7.5E-11 82.4 30.5 204 259-483 196-412 (493)
114 3q7a_A Farnesyltransferase alp 98.9 8.9E-07 3E-11 79.7 25.1 149 105-256 56-215 (349)
115 2ifu_A Gamma-SNAP; membrane fu 98.9 3E-08 1E-12 89.6 15.9 227 150-403 3-253 (307)
116 3q7a_A Farnesyltransferase alp 98.9 1.4E-06 4.7E-11 78.4 25.0 171 82-257 69-257 (349)
117 2uy1_A Cleavage stimulation fa 98.9 4.7E-06 1.6E-10 80.1 30.0 355 70-448 16-412 (493)
118 2ifu_A Gamma-SNAP; membrane fu 98.9 6.9E-08 2.3E-12 87.2 16.1 226 115-368 3-253 (307)
119 3u3w_A Transcriptional activat 98.9 7E-07 2.4E-11 80.0 22.4 159 180-338 82-263 (293)
120 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3.1E-07 1E-11 77.9 18.8 129 105-238 8-152 (213)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3.7E-07 1.3E-11 77.3 18.6 128 141-272 9-151 (213)
122 1a17_A Serine/threonine protei 98.8 2.4E-07 8.3E-12 74.8 15.3 127 140-268 15-143 (166)
123 2qfc_A PLCR protein; TPR, HTH, 98.8 9.3E-07 3.2E-11 79.1 19.9 162 143-304 80-264 (293)
124 4gco_A Protein STI-1; structur 98.8 2.2E-07 7.4E-12 71.3 13.6 94 141-235 16-109 (126)
125 3u3w_A Transcriptional activat 98.8 1.7E-06 5.7E-11 77.5 21.5 91 214-304 82-182 (293)
126 4gco_A Protein STI-1; structur 98.8 2.2E-07 7.7E-12 71.2 13.6 95 176-271 16-110 (126)
127 2c2l_A CHIP, carboxy terminus 98.7 7.6E-08 2.6E-12 85.6 12.1 195 206-411 3-199 (281)
128 1a17_A Serine/threonine protei 98.7 3.1E-07 1.1E-11 74.2 14.8 95 176-271 16-110 (166)
129 2c2l_A CHIP, carboxy terminus 98.7 4.9E-08 1.7E-12 86.9 10.4 98 137-235 3-100 (281)
130 1na0_A Designed protein CTPR3; 98.7 4.8E-07 1.6E-11 68.9 14.6 94 140-234 11-104 (125)
131 3gw4_A Uncharacterized protein 98.7 1.3E-07 4.4E-12 79.4 12.1 97 208-304 27-134 (203)
132 4f3v_A ESX-1 secretion system 98.7 9.5E-07 3.2E-11 76.8 16.9 188 80-271 19-237 (282)
133 2qfc_A PLCR protein; TPR, HTH, 98.7 1.8E-06 6.1E-11 77.3 19.5 165 175-339 77-264 (293)
134 3gyz_A Chaperone protein IPGC; 98.7 2.1E-07 7.1E-12 73.7 11.8 98 206-305 35-132 (151)
135 2lni_A Stress-induced-phosphop 98.7 5E-07 1.7E-11 69.8 13.9 119 100-220 13-131 (133)
136 4f3v_A ESX-1 secretion system 98.7 2.2E-07 7.5E-12 80.8 12.7 188 150-341 18-237 (282)
137 3gyz_A Chaperone protein IPGC; 98.7 2E-07 6.7E-12 73.9 11.4 100 137-237 35-134 (151)
138 3gw4_A Uncharacterized protein 98.7 1.6E-07 5.4E-12 78.9 11.7 131 174-304 27-174 (203)
139 1na0_A Designed protein CTPR3; 98.7 5.7E-07 2E-11 68.4 13.9 95 209-305 11-105 (125)
140 2lni_A Stress-induced-phosphop 98.7 3.6E-07 1.2E-11 70.6 12.9 116 137-254 15-130 (133)
141 2vyi_A SGTA protein; chaperone 98.7 4.5E-07 1.5E-11 69.7 13.3 94 141-235 15-108 (131)
142 2e2e_A Formate-dependent nitri 98.6 1.5E-07 5.1E-12 77.2 10.0 118 186-305 23-143 (177)
143 2vyi_A SGTA protein; chaperone 98.6 9.4E-07 3.2E-11 67.8 13.8 120 102-223 11-130 (131)
144 2vgx_A Chaperone SYCD; alterna 98.6 3E-07 1E-11 72.9 10.6 98 138-236 21-118 (148)
145 3dss_A Geranylgeranyl transfer 98.6 3E-05 1E-09 69.4 24.6 92 155-248 91-185 (331)
146 2vgx_A Chaperone SYCD; alterna 98.6 1.9E-07 6.4E-12 74.0 9.4 94 209-304 23-116 (148)
147 2e2e_A Formate-dependent nitri 98.6 3.4E-07 1.2E-11 75.1 11.0 119 151-271 23-144 (177)
148 3dss_A Geranylgeranyl transfer 98.6 3.3E-05 1.1E-09 69.2 24.4 183 189-376 90-304 (331)
149 1p5q_A FKBP52, FK506-binding p 98.6 1.2E-06 4.1E-11 80.0 15.2 124 137-261 146-283 (336)
150 1p5q_A FKBP52, FK506-binding p 98.6 1.3E-06 4.6E-11 79.7 15.2 132 102-234 146-292 (336)
151 2fbn_A 70 kDa peptidylprolyl i 98.5 1.5E-07 5.2E-12 78.8 7.4 123 208-332 39-176 (198)
152 1elw_A TPR1-domain of HOP; HOP 98.5 3.5E-06 1.2E-10 63.2 14.2 92 142-234 8-99 (118)
153 3upv_A Heat shock protein STI1 98.5 1.5E-06 5.3E-11 66.5 12.2 95 140-235 6-100 (126)
154 2fbn_A 70 kDa peptidylprolyl i 98.5 1.4E-07 4.8E-12 79.0 6.6 97 138-235 38-150 (198)
155 3upv_A Heat shock protein STI1 98.5 1.6E-06 5.3E-11 66.4 11.8 94 176-270 7-100 (126)
156 1elw_A TPR1-domain of HOP; HOP 98.5 6.4E-06 2.2E-10 61.7 14.8 113 102-216 3-115 (118)
157 4b4t_Q 26S proteasome regulato 98.4 1.3E-05 4.5E-10 76.0 19.1 54 181-234 12-82 (434)
158 2xcb_A PCRH, regulatory protei 98.4 1.8E-06 6.3E-11 67.7 10.8 95 105-201 20-114 (142)
159 2xcb_A PCRH, regulatory protei 98.4 3.4E-06 1.1E-10 66.2 12.1 96 139-235 19-114 (142)
160 2kck_A TPR repeat; tetratricop 98.4 2.1E-06 7.2E-11 63.8 10.3 95 104-200 7-104 (112)
161 4gcn_A Protein STI-1; structur 98.4 5.1E-06 1.7E-10 63.6 12.4 58 211-269 12-69 (127)
162 2kck_A TPR repeat; tetratricop 98.4 4.8E-06 1.6E-10 61.8 12.0 101 137-238 5-108 (112)
163 3sz7_A HSC70 cochaperone (SGT) 98.4 5E-06 1.7E-10 67.0 12.7 96 139-235 12-107 (164)
164 2dba_A Smooth muscle cell asso 98.4 1.2E-05 4.3E-10 63.1 14.8 28 139-166 29-56 (148)
165 3q49_B STIP1 homology and U bo 98.4 6.6E-06 2.3E-10 63.8 13.0 95 138-233 9-103 (137)
166 4gcn_A Protein STI-1; structur 98.4 4.6E-06 1.6E-10 63.9 11.7 95 176-270 11-111 (127)
167 3sz7_A HSC70 cochaperone (SGT) 98.4 8.9E-06 3E-10 65.5 13.7 107 102-210 10-116 (164)
168 3q49_B STIP1 homology and U bo 98.4 6.2E-06 2.1E-10 64.0 12.3 101 100-202 6-106 (137)
169 2dba_A Smooth muscle cell asso 98.4 1.5E-05 5.3E-10 62.5 14.6 114 100-216 25-142 (148)
170 4b4t_Q 26S proteasome regulato 98.3 3.7E-05 1.3E-09 72.9 19.6 196 110-305 11-244 (434)
171 1elr_A TPR2A-domain of HOP; HO 98.3 4.4E-06 1.5E-10 64.0 10.4 94 141-235 7-107 (131)
172 1hxi_A PEX5, peroxisome target 98.3 4.7E-06 1.6E-10 63.2 10.0 23 210-232 88-110 (121)
173 1hxi_A PEX5, peroxisome target 98.3 4.6E-06 1.6E-10 63.2 9.7 93 211-305 21-113 (121)
174 1elr_A TPR2A-domain of HOP; HO 98.3 4.2E-06 1.4E-10 64.1 9.6 96 175-270 6-107 (131)
175 2xev_A YBGF; tetratricopeptide 98.2 3E-05 1E-09 59.3 13.3 20 249-268 83-102 (129)
176 2xev_A YBGF; tetratricopeptide 98.2 3.9E-05 1.3E-09 58.6 13.8 91 145-236 9-105 (129)
177 3ro3_A PINS homolog, G-protein 98.2 7.2E-06 2.5E-10 65.5 9.6 24 245-268 92-115 (164)
178 3ro3_A PINS homolog, G-protein 98.2 9.6E-06 3.3E-10 64.7 9.9 131 140-270 11-157 (164)
179 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 3.2E-05 1.1E-09 73.8 15.0 88 174-262 318-405 (457)
180 1ihg_A Cyclophilin 40; ppiase 98.2 2.1E-05 7.3E-10 72.6 12.8 138 139-297 224-361 (370)
181 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 2.2E-05 7.4E-10 75.0 13.3 96 207-304 317-413 (457)
182 1wao_1 Serine/threonine protei 98.1 4.7E-06 1.6E-10 79.9 8.4 118 147-266 15-134 (477)
183 1wao_1 Serine/threonine protei 98.1 5.1E-06 1.7E-10 79.7 8.5 121 179-301 12-134 (477)
184 3k9i_A BH0479 protein; putativ 98.1 3.6E-06 1.2E-10 63.4 5.6 84 152-235 4-89 (117)
185 1dce_A Protein (RAB geranylger 98.1 0.00011 3.6E-09 71.9 17.3 172 155-330 46-244 (567)
186 1ihg_A Cyclophilin 40; ppiase 98.1 2.4E-05 8.3E-10 72.2 12.0 92 241-334 272-363 (370)
187 1dce_A Protein (RAB geranylger 98.1 0.00026 8.9E-09 69.2 19.8 172 119-294 45-243 (567)
188 3k9i_A BH0479 protein; putativ 98.1 5.8E-06 2E-10 62.2 6.2 91 115-206 2-94 (117)
189 3rkv_A Putative peptidylprolyl 98.1 4.3E-05 1.5E-09 61.3 11.4 97 140-236 13-126 (162)
190 3rkv_A Putative peptidylprolyl 98.0 5E-05 1.7E-09 60.9 10.5 62 243-305 64-125 (162)
191 2if4_A ATFKBP42; FKBP-like, al 98.0 3.2E-05 1.1E-09 70.5 9.8 147 105-271 181-328 (338)
192 2hr2_A Hypothetical protein; a 97.9 0.00012 4.2E-09 57.3 11.1 94 140-233 13-128 (159)
193 1klx_A Cysteine rich protein B 97.9 0.00019 6.4E-09 55.7 12.2 109 292-411 10-126 (138)
194 2if4_A ATFKBP42; FKBP-like, al 97.9 2E-05 7E-10 71.8 7.7 149 138-306 179-328 (338)
195 2hr2_A Hypothetical protein; a 97.9 0.00011 3.8E-09 57.5 10.6 61 244-305 59-130 (159)
196 1klx_A Cysteine rich protein B 97.9 0.0002 7E-09 55.4 11.8 111 326-450 9-127 (138)
197 2l6j_A TPR repeat-containing p 97.8 1.8E-05 6.1E-10 58.6 4.4 60 105-165 6-65 (111)
198 3n71_A Histone lysine methyltr 97.8 7.3E-05 2.5E-09 71.3 9.2 125 286-410 318-463 (490)
199 2l6j_A TPR repeat-containing p 97.8 4E-05 1.4E-09 56.6 5.9 96 137-233 3-104 (111)
200 3n71_A Histone lysine methyltr 97.7 0.00016 5.5E-09 69.0 11.1 126 251-376 318-464 (490)
201 2kat_A Uncharacterized protein 97.7 0.00024 8.2E-09 52.9 9.2 62 206-268 18-79 (115)
202 1na3_A Designed protein CTPR2; 97.7 0.00037 1.3E-08 49.0 9.6 22 144-165 15-36 (91)
203 1na3_A Designed protein CTPR2; 97.6 0.00034 1.2E-08 49.3 9.1 61 175-235 11-71 (91)
204 2kat_A Uncharacterized protein 97.6 0.00025 8.7E-09 52.8 8.7 78 157-235 4-81 (115)
205 1zu2_A Mitochondrial import re 97.6 0.00016 5.3E-09 56.6 6.6 97 151-250 15-132 (158)
206 1zu2_A Mitochondrial import re 97.5 0.00027 9.3E-09 55.2 7.7 56 259-317 63-129 (158)
207 3ma5_A Tetratricopeptide repea 97.4 0.00081 2.8E-08 48.6 8.1 59 175-233 9-67 (100)
208 3ma5_A Tetratricopeptide repea 97.3 0.0011 3.7E-08 47.9 8.2 63 206-269 6-68 (100)
209 3mkq_A Coatomer beta'-subunit; 97.1 0.024 8.2E-07 58.3 18.3 156 215-409 607-763 (814)
210 3ly7_A Transcriptional activat 97.0 0.018 6.2E-07 51.8 14.5 64 276-341 276-339 (372)
211 3ly7_A Transcriptional activat 96.8 0.0071 2.4E-07 54.4 10.1 66 204-271 274-339 (372)
212 3mkq_A Coatomer beta'-subunit; 96.8 0.055 1.9E-06 55.6 18.4 151 113-301 609-760 (814)
213 2kc7_A BFR218_protein; tetratr 96.8 0.0023 8E-08 45.8 5.6 14 151-164 13-26 (99)
214 3qww_A SET and MYND domain-con 96.7 0.0031 1.1E-07 59.1 7.3 87 324-410 310-410 (433)
215 3qwp_A SET and MYND domain-con 96.7 0.0051 1.8E-07 57.6 8.7 92 180-271 294-400 (429)
216 3qwp_A SET and MYND domain-con 96.7 0.007 2.4E-07 56.7 9.5 92 319-410 294-399 (429)
217 3qww_A SET and MYND domain-con 96.6 0.0026 9E-08 59.5 6.4 62 209-270 342-410 (433)
218 1wy6_A Hypothetical protein ST 96.6 0.13 4.5E-06 38.2 16.4 141 148-309 17-157 (172)
219 2kc7_A BFR218_protein; tetratr 96.6 0.018 6.2E-07 40.9 9.4 59 109-168 6-65 (99)
220 3mkq_B Coatomer subunit alpha; 96.4 0.22 7.6E-06 39.4 15.1 45 184-233 16-60 (177)
221 3bee_A Putative YFRE protein; 96.2 0.075 2.6E-06 37.3 10.6 45 120-165 26-70 (93)
222 3bee_A Putative YFRE protein; 96.2 0.025 8.4E-07 39.9 8.0 45 190-234 26-70 (93)
223 1pc2_A Mitochondria fission pr 96.2 0.037 1.3E-06 42.7 9.4 90 362-458 13-107 (152)
224 3mkq_B Coatomer subunit alpha; 96.2 0.18 6.1E-06 40.0 13.3 101 252-373 15-115 (177)
225 3u64_A Protein TP_0956; tetrat 96.1 0.61 2.1E-05 40.3 19.1 91 224-316 180-281 (301)
226 3u64_A Protein TP_0956; tetrat 96.0 0.095 3.2E-06 45.2 11.7 85 293-379 179-272 (301)
227 2v5f_A Prolyl 4-hydroxylase su 95.9 0.063 2.2E-06 38.7 9.2 25 105-129 7-31 (104)
228 1pc2_A Mitochondria fission pr 95.9 0.09 3.1E-06 40.5 10.2 80 329-410 15-99 (152)
229 2v5f_A Prolyl 4-hydroxylase su 95.8 0.12 4.1E-06 37.1 10.3 78 136-213 3-86 (104)
230 4ady_A RPN2, 26S proteasome re 95.6 2.5 8.5E-05 43.2 27.1 224 216-449 383-623 (963)
231 1wy6_A Hypothetical protein ST 95.5 0.52 1.8E-05 35.1 15.0 137 220-378 20-156 (172)
232 4ady_A RPN2, 26S proteasome re 95.5 2 6.7E-05 44.0 20.7 243 211-467 415-673 (963)
233 1nzn_A CGI-135 protein, fissio 95.5 0.11 3.9E-06 38.4 9.0 82 363-448 17-102 (126)
234 4h7y_A Dual specificity protei 95.3 0.25 8.5E-06 37.6 10.4 51 326-377 74-124 (161)
235 4h7y_A Dual specificity protei 95.1 0.16 5.4E-06 38.7 8.8 101 100-202 10-123 (161)
236 1nzn_A CGI-135 protein, fissio 93.8 0.4 1.4E-05 35.5 8.3 82 327-410 16-102 (126)
237 3o48_A Mitochondria fission 1 93.8 0.44 1.5E-05 35.5 8.5 70 415-484 38-107 (134)
238 1y8m_A FIS1; mitochondria, unk 93.7 0.92 3.2E-05 34.2 10.2 67 379-448 36-105 (144)
239 4b4t_P 26S proteasome regulato 93.2 5.4 0.00019 37.3 19.1 50 117-166 30-84 (445)
240 4b4t_P 26S proteasome regulato 92.8 6.2 0.00021 36.9 18.5 95 316-410 141-246 (445)
241 3lvg_A Clathrin heavy chain 1; 92.6 2.7E-06 9.2E-11 77.8 -25.0 264 174-482 55-318 (624)
242 4gns_B Protein CSD3, chitin bi 92.0 0.51 1.7E-05 47.1 8.8 128 106-233 251-397 (754)
243 4fhn_B Nucleoporin NUP120; pro 91.8 6.5 0.00022 42.0 17.6 130 314-447 901-1048(1139)
244 1v54_E Cytochrome C oxidase po 91.6 1.1 3.9E-05 31.2 7.5 45 121-165 28-72 (109)
245 2ff4_A Probable regulatory pro 91.5 0.6 2.1E-05 42.9 8.3 69 212-281 176-249 (388)
246 4gns_B Protein CSD3, chitin bi 91.3 1.2 4.2E-05 44.5 10.6 51 357-408 347-397 (754)
247 2ff4_A Probable regulatory pro 91.2 0.8 2.7E-05 42.1 8.8 69 350-419 174-247 (388)
248 3lvg_A Clathrin heavy chain 1; 91.0 0.00064 2.2E-08 62.5 -11.7 88 102-198 82-169 (624)
249 2y69_E Cytochrome C oxidase su 88.9 3.8 0.00013 30.4 8.7 59 121-180 71-129 (152)
250 3o48_A Mitochondria fission 1 88.9 5.4 0.00018 29.7 9.7 47 295-341 61-107 (134)
251 4fhn_B Nucleoporin NUP120; pro 88.7 9.6 0.00033 40.7 15.7 147 317-473 817-989 (1139)
252 1v54_E Cytochrome C oxidase po 88.0 5.2 0.00018 28.0 8.8 41 439-479 29-69 (109)
253 1qsa_A Protein (soluble lytic 87.1 24 0.00081 34.5 31.7 268 88-375 57-347 (618)
254 2y69_E Cytochrome C oxidase su 86.7 6 0.00021 29.4 8.7 63 327-390 68-130 (152)
255 3ffl_A Anaphase-promoting comp 85.5 7.6 0.00026 30.2 9.3 28 383-410 123-150 (167)
256 3ffl_A Anaphase-promoting comp 84.4 9.3 0.00032 29.7 9.4 61 139-199 21-89 (167)
257 1y8m_A FIS1; mitochondria, unk 83.7 12 0.00042 28.2 11.6 21 320-340 85-105 (144)
258 1zbp_A Hypothetical protein VP 83.3 7.6 0.00026 33.0 9.2 53 147-200 6-58 (273)
259 2p58_C Putative type III secre 82.5 8.6 0.0003 26.8 7.4 77 81-168 21-99 (116)
260 4b4t_R RPN7, 26S proteasome re 81.8 25 0.00085 32.6 13.3 98 209-306 133-237 (429)
261 1zbp_A Hypothetical protein VP 81.5 24 0.00081 30.0 12.9 115 355-483 5-128 (273)
262 3txn_A 26S proteasome regulato 80.9 33 0.0011 31.3 25.5 225 247-488 104-347 (394)
263 3lpz_A GET4 (YOR164C homolog); 80.8 30 0.001 30.6 20.8 111 105-230 37-159 (336)
264 3txn_A 26S proteasome regulato 80.5 34 0.0012 31.2 23.3 168 212-383 104-290 (394)
265 2wpv_A GET4, UPF0363 protein Y 80.0 30 0.001 30.3 18.9 111 105-230 35-157 (312)
266 3lpz_A GET4 (YOR164C homolog); 80.0 32 0.0011 30.5 22.2 82 380-483 134-215 (336)
267 2uwj_G Type III export protein 79.9 8.3 0.00028 26.8 6.6 77 81-168 20-98 (115)
268 4b4t_R RPN7, 26S proteasome re 77.5 17 0.00057 33.8 10.6 98 244-341 133-237 (429)
269 3esl_A Checkpoint serine/threo 76.6 22 0.00076 28.6 9.4 57 395-454 92-149 (202)
270 2wpv_A GET4, UPF0363 protein Y 76.3 39 0.0013 29.6 19.8 82 380-483 132-216 (312)
271 2p58_C Putative type III secre 74.9 19 0.00064 25.2 8.0 78 153-237 22-99 (116)
272 2uwj_G Type III export protein 74.9 18 0.00063 25.2 7.2 78 153-237 21-98 (115)
273 1wdy_A 2-5A-dependent ribonucl 72.9 8.3 0.00028 33.0 7.0 18 109-126 8-25 (285)
274 3eiq_C Programmed cell death p 71.9 35 0.0012 30.6 10.6 65 316-381 221-287 (358)
275 4a1g_A Mitotic checkpoint seri 61.9 51 0.0017 25.2 10.2 50 439-488 84-134 (152)
276 2wvi_A Mitotic checkpoint seri 60.0 59 0.002 25.2 10.2 51 401-454 79-130 (164)
277 2zu6_B Programmed cell death p 59.5 90 0.0031 27.2 12.2 235 244-488 5-278 (307)
278 4aez_C MAD3, mitotic spindle c 57.4 79 0.0027 25.9 10.0 48 439-486 133-181 (223)
279 1wdy_A 2-5A-dependent ribonucl 57.2 34 0.0012 28.9 7.8 246 212-491 7-282 (285)
280 3eiq_C Programmed cell death p 56.3 1.1E+02 0.0038 27.3 16.5 82 385-468 220-301 (358)
281 2nsz_A Programmed cell death p 54.9 61 0.0021 23.9 8.0 21 144-164 13-33 (129)
282 1bpo_A Protein (clathrin); cla 54.9 1.4E+02 0.0046 27.9 11.5 121 70-197 333-453 (494)
283 2zu6_B Programmed cell death p 54.4 91 0.0031 27.2 9.7 25 176-200 6-30 (307)
284 4b4t_S RPN3, 26S proteasome re 51.9 1.5E+02 0.0051 28.1 11.2 62 173-236 231-299 (523)
285 2d2s_A Exocyst complex compone 51.6 70 0.0024 26.6 8.3 89 108-199 23-117 (235)
286 3kea_A K1L; tropism, ANK repea 50.7 51 0.0017 28.2 7.8 18 285-302 166-183 (285)
287 3esl_A Checkpoint serine/threo 50.5 98 0.0033 24.9 11.9 55 117-171 93-148 (202)
288 2ion_A PDCD4, programmed cell 49.6 53 0.0018 25.1 6.7 21 144-164 15-35 (152)
289 3ltm_A Alpha-REP4; protein eng 49.5 98 0.0034 24.7 18.2 17 241-257 125-141 (211)
290 1k1a_A B-cell lymphoma 3-encod 47.0 73 0.0025 26.0 8.0 85 110-198 13-101 (241)
291 3ctd_A Putative ATPase, AAA fa 46.3 1.2E+02 0.004 24.6 9.0 47 210-256 35-84 (213)
292 2nsz_A Programmed cell death p 46.1 86 0.0029 23.1 10.7 24 351-374 11-34 (129)
293 3hra_A Ankyrin repeat family p 45.1 35 0.0012 27.1 5.5 14 184-197 13-26 (201)
294 3eu9_A Huntingtin-interacting 45.0 48 0.0016 27.0 6.6 11 183-193 49-59 (240)
295 1ug3_A EIF4GI, eukaryotic prot 44.5 1.3E+02 0.0045 26.6 9.5 25 141-165 14-38 (339)
296 4b4t_S RPN3, 26S proteasome re 42.1 2.3E+02 0.0079 26.8 13.8 25 314-338 233-257 (523)
297 3ltj_A Alpharep-4; protein eng 41.1 1.3E+02 0.0044 23.7 17.9 91 346-448 89-179 (201)
298 2ijq_A Hypothetical protein; s 40.5 1.2E+02 0.0043 23.3 8.5 61 105-166 35-103 (161)
299 2o03_A Probable zinc uptake re 40.2 47 0.0016 24.5 5.0 44 109-152 16-59 (131)
300 3hra_A Ankyrin repeat family p 40.1 47 0.0016 26.3 5.5 15 113-127 12-26 (201)
301 2qx5_A Nucleoporin NIC96; mRNA 39.9 2.8E+02 0.0097 27.3 20.6 80 248-338 300-382 (661)
302 4g8k_A 2-5A-dependent ribonucl 39.3 1.1E+02 0.0038 26.7 8.4 102 299-416 221-328 (337)
303 2d2s_A Exocyst complex compone 39.1 1.7E+02 0.0057 24.3 9.7 28 241-268 90-117 (235)
304 4aez_C MAD3, mitotic spindle c 38.9 56 0.0019 26.8 5.5 45 262-306 134-179 (223)
305 3kae_A CDC27, possible protein 38.3 1.4E+02 0.0049 23.3 7.3 52 216-267 71-139 (242)
306 3mwm_A ZUR, putative metal upt 37.5 44 0.0015 25.0 4.5 44 109-152 19-62 (139)
307 2ijq_A Hypothetical protein; s 37.3 1.4E+02 0.0048 23.0 8.1 52 219-270 44-103 (161)
308 2r9g_A AAA ATPase, central reg 36.9 1.6E+02 0.0056 23.6 9.8 17 256-272 28-44 (204)
309 2rfa_A Transient receptor pote 36.3 1.4E+02 0.0047 24.1 8.0 14 184-197 45-58 (232)
310 2ion_A PDCD4, programmed cell 35.7 1.4E+02 0.0049 22.6 10.7 64 349-413 11-76 (152)
311 4a1g_A Mitotic checkpoint seri 35.6 1.5E+02 0.005 22.7 11.5 50 122-171 84-134 (152)
312 2xig_A Ferric uptake regulatio 35.5 1.4E+02 0.0047 22.6 7.1 47 233-280 18-64 (150)
313 2fe3_A Peroxide operon regulat 35.5 66 0.0022 24.2 5.3 42 111-152 29-70 (145)
314 2r9g_A AAA ATPase, central reg 34.9 1.8E+02 0.006 23.4 9.6 64 210-274 14-85 (204)
315 4gq2_M Nucleoporin NUP120; bet 34.6 2.3E+02 0.008 29.4 10.8 49 278-326 898-950 (950)
316 3l6a_A Eukaryotic translation 34.3 2.6E+02 0.0087 25.1 10.8 25 176-200 15-39 (364)
317 1mzb_A Ferric uptake regulatio 33.9 62 0.0021 24.0 4.9 35 118-152 33-67 (136)
318 3kea_A K1L; tropism, ANK repea 33.8 1.2E+02 0.0041 25.8 7.4 148 110-270 35-186 (285)
319 2fe3_A Peroxide operon regulat 33.7 1.4E+02 0.0048 22.4 6.9 54 233-287 13-66 (145)
320 4ets_A Ferric uptake regulatio 32.9 87 0.003 24.1 5.7 44 145-188 39-84 (162)
321 3eyy_A Putative iron uptake re 31.8 70 0.0024 24.1 4.9 41 111-152 26-66 (145)
322 3ltm_A Alpha-REP4; protein eng 30.9 2E+02 0.0068 22.8 20.0 153 102-270 32-184 (211)
323 3bge_A Predicted ATPase; struc 30.3 2.1E+02 0.0072 22.9 9.1 31 256-286 21-51 (201)
324 2xig_A Ferric uptake regulatio 30.3 1.8E+02 0.006 22.0 7.5 43 319-361 33-75 (150)
325 3eu9_A Huntingtin-interacting 30.0 56 0.0019 26.6 4.6 22 464-485 216-237 (240)
326 2b7e_A PRE-mRNA processing pro 29.8 29 0.00099 21.5 1.8 28 295-322 4-31 (59)
327 3ctd_A Putative ATPase, AAA fa 29.4 2.3E+02 0.0078 23.0 9.4 63 247-309 37-107 (213)
328 3bge_A Predicted ATPase; struc 29.3 2.2E+02 0.0075 22.8 8.8 45 212-256 9-56 (201)
329 1ug3_A EIF4GI, eukaryotic prot 29.0 58 0.002 28.9 4.6 25 176-200 14-38 (339)
330 3t8k_A Uncharacterized protein 29.0 2.1E+02 0.0071 22.4 7.6 28 284-311 42-69 (186)
331 2wvi_A Mitotic checkpoint seri 29.0 2E+02 0.0069 22.2 10.8 50 122-171 79-129 (164)
332 3aji_A 26S proteasome non-ATPa 28.7 1.4E+02 0.0046 24.1 6.7 19 110-128 10-28 (231)
333 1bd8_A P19INK4D CDK4/6 inhibit 28.5 76 0.0026 23.6 4.7 15 149-163 10-24 (156)
334 1mzb_A Ferric uptake regulatio 28.3 1.4E+02 0.0048 22.0 6.0 21 257-277 33-53 (136)
335 3f3f_C Nucleoporin NUP85; stru 28.1 2.3E+02 0.0079 27.1 8.5 29 137-165 515-543 (570)
336 2cos_A Serine/threonine protei 27.4 55 0.0019 19.7 2.6 37 441-482 11-49 (54)
337 2f6m_A Suppressor protein STP2 27.3 1.2E+02 0.004 19.2 4.3 45 106-151 5-49 (65)
338 2w57_A Ferric uptake regulatio 27.0 70 0.0024 24.3 4.1 34 119-152 33-66 (150)
339 3jxi_A Vanilloid receptor-rela 26.9 32 0.0011 28.8 2.4 19 149-167 13-31 (260)
340 3ubw_A 14-3-3E, 14-3-3 protein 26.8 2.9E+02 0.0098 23.3 10.7 60 210-269 34-94 (261)
341 4ets_A Ferric uptake regulatio 26.7 1.2E+02 0.0042 23.3 5.5 44 318-361 38-83 (162)
342 3mwm_A ZUR, putative metal upt 26.4 1.9E+02 0.0066 21.4 6.5 31 439-469 32-62 (139)
343 2w57_A Ferric uptake regulatio 26.0 1.9E+02 0.0065 21.8 6.5 35 327-361 32-66 (150)
344 2rfa_A Transient receptor pote 25.7 2.3E+02 0.0079 22.7 7.7 17 181-197 8-24 (232)
345 1bpo_A Protein (clathrin); cla 25.7 4.1E+02 0.014 24.8 11.8 83 326-412 343-425 (494)
346 3jxi_A Vanilloid receptor-rela 25.7 29 0.00099 29.1 1.9 20 218-237 13-32 (260)
347 3pvs_A Replication-associated 25.3 4.1E+02 0.014 24.6 14.4 137 257-412 166-325 (447)
348 3dfg_A Xcrecx, regulatory prot 25.0 2.3E+02 0.008 21.7 10.0 12 123-134 85-96 (162)
349 3pvs_A Replication-associated 24.9 4.1E+02 0.014 24.5 13.8 54 255-308 268-326 (447)
350 4gq2_M Nucleoporin NUP120; bet 24.1 6.2E+02 0.021 26.3 15.0 49 243-291 898-950 (950)
351 4fke_A Aminopeptidase N; zinc 23.4 6.3E+02 0.021 26.0 16.9 163 246-411 690-860 (909)
352 4g8k_A 2-5A-dependent ribonucl 23.3 2.3E+02 0.0079 24.5 7.6 13 184-196 176-188 (337)
353 2o03_A Probable zinc uptake re 23.2 1.4E+02 0.0047 21.9 5.1 44 213-256 16-59 (131)
354 3ltj_A Alpharep-4; protein eng 23.0 2.7E+02 0.0093 21.7 21.1 80 102-189 27-106 (201)
355 3bqo_A Telomeric repeat-bindin 22.4 1.7E+02 0.0059 23.4 5.4 23 180-202 124-146 (211)
356 1qsa_A Protein (soluble lytic 22.2 5.5E+02 0.019 25.0 35.7 306 100-435 99-431 (618)
357 3eyy_A Putative iron uptake re 22.2 2.5E+02 0.0085 21.0 7.7 31 439-469 36-66 (145)
358 2ko4_A Mediator of RNA polymer 22.1 1.1E+02 0.0036 20.2 3.4 36 94-129 27-62 (81)
359 1zl8_A LIN-7; heterodimer, alp 21.6 51 0.0018 19.4 1.7 21 469-489 7-27 (53)
360 3t8k_A Uncharacterized protein 21.2 2.9E+02 0.01 21.4 8.7 28 249-276 42-69 (186)
361 2fu4_A Ferric uptake regulatio 20.7 1.8E+02 0.0062 18.8 8.2 60 407-470 7-67 (83)
362 1k1a_A B-cell lymphoma 3-encod 20.5 2.4E+02 0.0083 22.6 6.8 51 147-197 15-67 (241)
363 1wgl_A TOLL-interacting protei 20.2 78 0.0027 19.5 2.5 16 151-166 36-51 (59)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.1e-35 Score=291.25 Aligned_cols=400 Identities=12% Similarity=0.003 Sum_probs=300.7
Q ss_pred HHHHHHHHh--hChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 011137 72 VDQIIKRLW--NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149 (493)
Q Consensus 72 ~~~~l~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 149 (493)
+..++..+. .+++.|+.+|+.+... .|+..++..++..|.+.|++++|..+|+.+... +++..++..++.+|.
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 161 (597)
T 2xpi_A 87 LRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLV 161 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHH
Confidence 344444332 3456677777666532 235566666777777777777777777666432 356666666666677
Q ss_pred HcCCHHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCC-----------
Q 011137 150 SAGKADRAVKIFLSMHEH---------------GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF----------- 203 (493)
Q Consensus 150 ~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----------- 203 (493)
+.|++++|+++|+++... +.+.+..+|+.++.+|.+.|++++|.++|+++....
T Consensus 162 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 241 (597)
T 2xpi_A 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLV 241 (597)
T ss_dssp HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHH
Confidence 777777776666642211 122346666666666666666666666666553221
Q ss_pred ------------------------------------------------------------CCCcchHHHHHHHHHhcCCh
Q 011137 204 ------------------------------------------------------------KADVISYNVIANGWCLVKRT 223 (493)
Q Consensus 204 ------------------------------------------------------------~~~~~~~~~l~~~~~~~~~~ 223 (493)
+++..+|+.++.+|.+.|++
T Consensus 242 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 321 (597)
T 2xpi_A 242 SNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRF 321 (597)
T ss_dssp HTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCH
T ss_pred HhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCH
Confidence 35667777888888888888
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 011137 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303 (493)
Q Consensus 224 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 303 (493)
++|.++|+++.+.+.. +..++..++.++.+.|++++|.++++++.+.. +.+..++..++.+|.+.|++++|.++|+++
T Consensus 322 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 399 (597)
T 2xpi_A 322 IDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKS 399 (597)
T ss_dssp HHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 8888888888766543 66677888888888888888888888887653 347888888999999999999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH
Q 011137 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383 (493)
Q Consensus 304 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 383 (493)
.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|..++.+|.+.|++++|.++|+++.+.. +.+..
T Consensus 400 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 476 (597)
T 2xpi_A 400 STMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPL 476 (597)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 8743 23677899999999999999999999999887643 377888899999999999999999999998764 45788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcC----CCCCC--HHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHH
Q 011137 384 TYNILIRYFCDAGEIERGLELFEKMGSG----VCLPN--LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457 (493)
Q Consensus 384 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 457 (493)
+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|...|++++ |.+.++++.+.+ ..+..+
T Consensus 477 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-p~~~~~ 552 (597)
T 2xpi_A 477 LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDA---AIDALNQGLLLS-TNDANV 552 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHHS-SCCHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHhC-CCChHH
Confidence 8999999999999999999999988775 55676 7899999999999999998 999999988764 346888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011137 458 FNRVLNGLLLIGNQGLAKEILRLQSRCG 485 (493)
Q Consensus 458 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g 485 (493)
|..+..+|...|++++|.++++.+.+..
T Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 553 HTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999998887753
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.6e-35 Score=294.16 Aligned_cols=373 Identities=11% Similarity=-0.011 Sum_probs=315.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011137 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180 (493)
Q Consensus 101 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 180 (493)
++...|+.++..+.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|+.+|+.+... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 57889999999999999999999999999864 468899999999999999999999999998653 67899999999
Q ss_pred HHHHccCCHHHHHHHHHHhhcCC----------------CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-----
Q 011137 181 DLLCKEKKVEKAYNLFKVFRGKF----------------KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN----- 239 (493)
Q Consensus 181 ~~~~~~g~~~~A~~~~~~~~~~~----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~----- 239 (493)
.+|.+.|++++|.++|+++.... +.+..+|+.++.+|.+.|++++|.++|++|.+.+..
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 99999999999999998533222 335789999999999999999999999998754321
Q ss_pred -----------------------------------------------------------------CCHHHHHHHHHHHHh
Q 011137 240 -----------------------------------------------------------------PNLTTYNIVLKGYFR 254 (493)
Q Consensus 240 -----------------------------------------------------------------p~~~~~~~l~~~~~~ 254 (493)
++..++..++.+|.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 456677777788888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011137 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334 (493)
Q Consensus 255 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 334 (493)
.|++++|.++|+++.+.+.. +..++..++.+|.+.|++++|.++++++.+.. +.+..+|+.++..|.+.|++++|.++
T Consensus 318 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 88888888888888776533 66778888888888888888888888887543 34678888999999999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 011137 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414 (493)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 414 (493)
|+++.+... .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+.. +
T Consensus 396 ~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 472 (597)
T 2xpi_A 396 FSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-Q 472 (597)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-C
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 999887532 357789999999999999999999999998774 5578889999999999999999999999998752 3
Q ss_pred CCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011137 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR----GFMPR--KFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485 (493)
Q Consensus 415 p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~----g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 485 (493)
.+..+|+.++..|.+.|++++ |.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++.+.+.+
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQT---AINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CChHHHHHHHHHHHHhCCHHH---HHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 478899999999999999998 99999998875 66787 7899999999999999999999998887764
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.4e-31 Score=255.81 Aligned_cols=186 Identities=16% Similarity=0.206 Sum_probs=112.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHCCCCCCHHH
Q 011137 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ---------IEEAWRFFLEMKKRKCEIDVVT 279 (493)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~---------~~~a~~~~~~~~~~~~~~~~~~ 279 (493)
.++.+|++|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. +++|.++|++|...|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4556666666666666666666666666666666666666666665443 4555556666655555556666
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011137 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359 (493)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 359 (493)
|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 66666666666666666666666655555556666666666666666666666666666555566666666666666666
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 011137 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394 (493)
Q Consensus 360 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 394 (493)
.|++++|.+++++|.+.+..|+..||+.++..|+.
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 66666666666666555555565566555555544
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=4.5e-28 Score=229.15 Aligned_cols=377 Identities=11% Similarity=0.027 Sum_probs=315.3
Q ss_pred HhhChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011137 79 LWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158 (493)
Q Consensus 79 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 158 (493)
-..+.+.|++.++.+.... |.+...+..+...+.+.|++++|...++...+.. +.+..+|..+...|.+.|++++|+
T Consensus 11 ~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 3467788998888775543 4577788888888999999999999999888764 367889999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 011137 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238 (493)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 238 (493)
+.|+++.+.. +.+...|..+..++.+.|++++|.+.|+++....|.+...+..+...+...|++++|.+.|+++.+...
T Consensus 88 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 166 (388)
T 1w3b_A 88 EHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 9999998764 455678889999999999999999999988776666777888899999999999999999999987644
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011137 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318 (493)
Q Consensus 239 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 318 (493)
. +..+|..+...+.+.|++++|...|+++.+.+.. +...+..+...+...|++++|+..|++..+... .+..++..+
T Consensus 167 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 243 (388)
T 1w3b_A 167 N-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNL 243 (388)
T ss_dssp T-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHHHHHH
Confidence 3 5788899999999999999999999999887543 678888899999999999999999999887532 357788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCH
Q 011137 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398 (493)
Q Consensus 319 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 398 (493)
..+|.+.|++++|...++++.+.+.. +..++..+..++.+.|++++|...++++.+.. +.+..++..+...+.+.|++
T Consensus 244 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 321 (388)
T 1w3b_A 244 ACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999887432 56788889999999999999999999998864 66788999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCC
Q 011137 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR-KFTFNRVLNGLLLIGN 470 (493)
Q Consensus 399 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 470 (493)
++|.+.++++.+. .+.+..++..+..++...|++++ |.+.++++.+. .|+ ...|..+...+...|+
T Consensus 322 ~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~---A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 322 EEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQE---ALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHH---HHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhh--CCCCHHHHHhHHHHHHHccC
Confidence 9999999999875 23467889999999999999999 99999999874 555 6667767666666553
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.4e-31 Score=255.76 Aligned_cols=205 Identities=17% Similarity=0.297 Sum_probs=128.6
Q ss_pred HHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC---------HH
Q 011137 225 KALEVLKEMVDRGLNPNL-TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE---------IK 294 (493)
Q Consensus 225 ~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~ 294 (493)
.+..+.+++.+.+..... ..++.+|++|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344455555555544332 34666677777777777777777777777777777777777777765543 56
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 011137 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374 (493)
Q Consensus 295 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 374 (493)
.|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Q 011137 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429 (493)
Q Consensus 375 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 429 (493)
+.|+.||..+|+.|+.+|++.|++++|.+++++|.+.|..|+..||+.++..|..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666666666666666666666665543
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=1.9e-28 Score=231.70 Aligned_cols=364 Identities=11% Similarity=0.060 Sum_probs=321.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 011137 109 AIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188 (493)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 188 (493)
+...+.+.|++++|.+.++.+.+..+ .+...+..+...+...|++++|...++...+.. +.+...|..+..++.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 34567889999999999999887653 567788888899999999999999999988764 6678899999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 189 VEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268 (493)
Q Consensus 189 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 268 (493)
+++|...|+++....|.+..+|..+..++.+.|++++|.+.|+++.+.... +...+..+...+...|++++|.+.|+++
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999988776777788999999999999999999999999986543 5567888899999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 011137 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348 (493)
Q Consensus 269 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 348 (493)
.+... .+..+|..+...+...|++++|+..|+++.+.+. .+...|..+...+...|++++|...+++..+... .+..
T Consensus 162 l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~ 238 (388)
T 1w3b_A 162 IETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAV 238 (388)
T ss_dssp HHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHH
T ss_pred HHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHH
Confidence 88743 3688999999999999999999999999988643 3677899999999999999999999999987643 2578
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHh
Q 011137 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428 (493)
Q Consensus 349 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 428 (493)
++..+..++...|++++|...++++.+.. +.+..+|..+...+.+.|++++|.+.|+++.+. .+.+..+|..+...+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHH
Confidence 89999999999999999999999999874 446889999999999999999999999999886 3457899999999999
Q ss_pred ccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011137 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484 (493)
Q Consensus 429 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 484 (493)
..|++++ |.+.++++.+.. ..+..++..+...+.+.|++++|.+.++.+.+.
T Consensus 317 ~~g~~~~---A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 317 EQGNIEE---AVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTTCHHH---HHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HcCCHHH---HHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999 999999999752 344788999999999999999999999988764
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=5.2e-24 Score=205.40 Aligned_cols=360 Identities=9% Similarity=0.036 Sum_probs=292.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 179 (493)
+.++..+..+...+.+.|++++|..+|+.+....+ .+..++..+..++...|++++|+..|+++.+.+ +.+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 34678899999999999999999999999987643 578899999999999999999999999999865 4568889999
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCc---chHHHHH------------HHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 011137 180 LDLLCKEKKVEKAYNLFKVFRGKFKADV---ISYNVIA------------NGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244 (493)
Q Consensus 180 l~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~------------~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 244 (493)
..+|.+.|++++|...|+++....+.+. ..+..++ ..+...|++++|+..|+++.+.... +..+
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 179 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAEL 179 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHH
Confidence 9999999999999999999988766666 6666664 4488999999999999999876543 7788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHH------
Q 011137 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM------ 318 (493)
Q Consensus 245 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l------ 318 (493)
+..++.+|.+.|++++|.+.++++.+... .+..++..+..+|...|++++|+..|+++.+... .+...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHH
Confidence 99999999999999999999999988643 4788999999999999999999999999987532 244455444
Q ss_pred ------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 011137 319 ------IQVLCKKDSVENAILVFEEMVGKGYMPN-----STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387 (493)
Q Consensus 319 ------i~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 387 (493)
...+.+.|++++|...|+++.+.. |+ ...+..+..++.+.|++++|+..++++.+.. +.+...|..
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~ 334 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 788999999999999999998853 33 3478888999999999999999999998763 457899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCC-CHHHHHHHHH------------HHhccC-----CcccHHHHHHHHHH-HHH
Q 011137 388 LIRYFCDAGEIERGLELFEKMGSGVCLP-NLDTYNILIS------------SMFVRK-----KSDDLLVAGKLLIE-MVD 448 (493)
Q Consensus 388 l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~li~------------~~~~~~-----~~~~~~~A~~~~~~-m~~ 448 (493)
+..+|...|++++|...++++.+. .| +...+..+.. .|...| +.++ +.+.+++ ..+
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~---~~~~y~~~~l~ 409 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQE---IIKAYRKLALQ 409 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTH---HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHH---HHHHHHHHHHH
Confidence 999999999999999999999885 34 4666666663 344444 3344 6777776 333
Q ss_pred CCCCCC----H-------HHHHHHHHHHHHcCCHHHH
Q 011137 449 RGFMPR----K-------FTFNRVLNGLLLIGNQGLA 474 (493)
Q Consensus 449 ~g~~p~----~-------~~~~~l~~~~~~~g~~~~a 474 (493)
. .|| . ..+..+..+|...|+.+.+
T Consensus 410 ~--~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 410 W--HPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp S--CGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred h--CCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 2 333 2 2566666666666665543
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.7e-24 Score=211.05 Aligned_cols=392 Identities=11% Similarity=-0.006 Sum_probs=292.8
Q ss_pred hhChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011137 80 WNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159 (493)
Q Consensus 80 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 159 (493)
..+...|+..|+.+.... |++..|..+..++.+.|++++|...++++.+.++ .+..++..+..++...|++++|+.
T Consensus 19 ~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~ 94 (514)
T 2gw1_A 19 NKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANEGLGKFADAMF 94 (514)
T ss_dssp TSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHhhHHHHHH
Confidence 345677777777775543 3677777777777777777777777777776543 456677777777777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh----------------------------------hcCC--
Q 011137 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF----------------------------------RGKF-- 203 (493)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~----------------------------------~~~~-- 203 (493)
.|+++.+.+ +++......++..+........+.+.+..+ ....
T Consensus 95 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (514)
T 2gw1_A 95 DLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKP 173 (514)
T ss_dssp HHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCC
T ss_pred HHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCH
Confidence 777777654 334444444444333322222211111000 0000
Q ss_pred ---------CCCcchHHHHHHHHHh---cCChhHHHHHHHHHHh-----CCCC--------CCHHHHHHHHHHHHhcCCH
Q 011137 204 ---------KADVISYNVIANGWCL---VKRTNKALEVLKEMVD-----RGLN--------PNLTTYNIVLKGYFRAGQI 258 (493)
Q Consensus 204 ---------~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~m~~-----~g~~--------p~~~~~~~l~~~~~~~g~~ 258 (493)
+.+...+......+.. .|++++|..+|+++.+ .... .+..++..+...+...|++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (514)
T 2gw1_A 174 ELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDP 253 (514)
T ss_dssp CCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCH
Confidence 1123344455554554 8999999999999987 3111 2346788889999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338 (493)
Q Consensus 259 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 338 (493)
++|...++++.+.... ...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++
T Consensus 254 ~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 330 (514)
T 2gw1_A 254 LGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKA 330 (514)
T ss_dssp HHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999887544 88899999999999999999999999988643 36778899999999999999999999999
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC-CC-
Q 011137 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL-PN- 416 (493)
Q Consensus 339 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~- 416 (493)
.+.... +...+..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|++++|...++++.+.... ++
T Consensus 331 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 408 (514)
T 2gw1_A 331 KELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408 (514)
T ss_dssp HHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSC
T ss_pred HHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchH
Confidence 887433 56788889999999999999999999998763 446778999999999999999999999998764211 11
Q ss_pred ---HHHHHHHHHHHhc---cCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011137 417 ---LDTYNILISSMFV---RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485 (493)
Q Consensus 417 ---~~~~~~li~~~~~---~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 485 (493)
...|..+...+.. .|++++ |...++++.+.. ..+..++..+...+...|++++|.+.++...+..
T Consensus 409 ~~~~~~~~~l~~~~~~~~~~~~~~~---A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 409 YVGIAPLVGKATLLTRNPTVENFIE---ATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp SSCSHHHHHHHHHHHTSCCTTHHHH---HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhhhhcCCHHH---HHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 3488889999999 899998 999999998753 3457788889999999999999999999887764
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=4.4e-23 Score=198.88 Aligned_cols=314 Identities=9% Similarity=0.036 Sum_probs=267.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 011137 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIAN 215 (493)
Q Consensus 136 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 215 (493)
.+...+..+...+.+.|++++|+.+|+++.+.. +.+...+..+..++...|++++|...|+++....+.+..++..++.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 467789999999999999999999999998764 5678899999999999999999999999988877778889999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011137 216 GWCLVKRTNKALEVLKEMVDRGLNPNL---TTYNIV------------LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280 (493)
Q Consensus 216 ~~~~~~~~~~A~~~~~~m~~~g~~p~~---~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 280 (493)
.|.+.|++++|.+.|+++.+.... +. ..+..+ ...+...|++++|...++++.+... .+..++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 180 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELR 180 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHH
Confidence 999999999999999999986433 33 455544 4458899999999999999988743 478899
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH-------
Q 011137 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV------- 353 (493)
Q Consensus 281 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------- 353 (493)
..+..+|.+.|++++|+++|+++.+.. +.+..++..+..+|...|++++|...++++.+.... +...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHH
Confidence 999999999999999999999998753 347889999999999999999999999999876322 34444444
Q ss_pred -----HHHHHhcCCHHHHHHHHHHhhhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 011137 354 -----IRGLCHTGEMERALEFVGRMKDDECEPN-----VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423 (493)
Q Consensus 354 -----i~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 423 (493)
...+.+.|++++|...|+++.+. .|+ ...+..+...+.+.|++++|...++++.+.. +.+...|..+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l 335 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 78899999999999999999885 333 4578899999999999999999999998742 3368999999
Q ss_pred HHHHhccCCcccHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 011137 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR-KFTFNRVL 462 (493)
Q Consensus 424 i~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~ 462 (493)
..+|...|++++ |...++++++. .|+ ...+..+.
T Consensus 336 ~~~~~~~~~~~~---A~~~~~~al~~--~p~~~~~~~~l~ 370 (450)
T 2y4t_A 336 AEAYLIEEMYDE---AIQDYETAQEH--NENDQQIREGLE 370 (450)
T ss_dssp HHHHHHTTCHHH---HHHHHHHHHTT--SSSCHHHHHHHH
T ss_pred HHHHHHhcCHHH---HHHHHHHHHHh--CcchHHHHHHHH
Confidence 999999999999 99999999984 566 45555554
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.1e-22 Score=197.58 Aligned_cols=365 Identities=11% Similarity=-0.019 Sum_probs=280.7
Q ss_pred hhChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011137 80 WNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159 (493)
Q Consensus 80 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 159 (493)
..+.+.|+..|+.+.... |.+...|..+..++.+.|++++|...|+.+...+. ++......++..+........+.+
T Consensus 52 ~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 128 (514)
T 2gw1_A 52 VGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKE 128 (514)
T ss_dssp HTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHH
Confidence 467899999999886543 55789999999999999999999999999988764 344444444444433332222222
Q ss_pred HHHHHHh-----------------------------------CCC---------CCCHHHHHHHHHHHHc---cCCHHHH
Q 011137 160 IFLSMHE-----------------------------------HGC---------RQSLNSFNTILDLLCK---EKKVEKA 192 (493)
Q Consensus 160 ~~~~~~~-----------------------------------~~~---------~~~~~~~~~ll~~~~~---~g~~~~A 192 (493)
.+..+.. ... +.+...+......+.. .|++++|
T Consensus 129 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 208 (514)
T 2gw1_A 129 KFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKA 208 (514)
T ss_dssp C---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHH
T ss_pred HHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHH
Confidence 2211100 000 1124444444444554 8999999
Q ss_pred HHHHHHhhc-----C--C-------CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 011137 193 YNLFKVFRG-----K--F-------KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258 (493)
Q Consensus 193 ~~~~~~~~~-----~--~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 258 (493)
...|+++.. . . +.+..++..+...+...|++++|...++++.+.... ...+..+..++...|++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~ 286 (514)
T 2gw1_A 209 DESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDS 286 (514)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCH
Confidence 999988765 2 1 234567888999999999999999999999876544 78888999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338 (493)
Q Consensus 259 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 338 (493)
++|...++++.+.... +..++..+...+...|++++|...|+++.+... .+...+..+...+...|++++|...++++
T Consensus 287 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 364 (514)
T 2gw1_A 287 TEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEA 364 (514)
T ss_dssp TTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999887443 677889999999999999999999999988643 36778888999999999999999999998
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHhc
Q 011137 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC-EPN----VQTYNILIRYFCD---AGEIERGLELFEKMGS 410 (493)
Q Consensus 339 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 410 (493)
.+... .+...+..+...+...|++++|...++++.+... .++ ...+..+...+.. .|++++|...++++.+
T Consensus 365 ~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 365 KRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK 443 (514)
T ss_dssp HHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred HHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 87632 2567888899999999999999999999876521 111 3488899999999 9999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHH
Q 011137 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458 (493)
Q Consensus 411 ~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 458 (493)
.. +.+..++..+...+...|++++ |...++++.+. .|+....
T Consensus 444 ~~-~~~~~~~~~la~~~~~~g~~~~---A~~~~~~a~~~--~~~~~~~ 485 (514)
T 2gw1_A 444 LD-PRSEQAKIGLAQMKLQQEDIDE---AITLFEESADL--ARTMEEK 485 (514)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHH--CSSHHHH
T ss_pred hC-cccHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHh--ccccHHH
Confidence 52 3367888999999999999999 99999999985 5664443
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=1.1e-21 Score=193.59 Aligned_cols=387 Identities=10% Similarity=0.023 Sum_probs=280.0
Q ss_pred hChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011137 81 NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160 (493)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 160 (493)
.+.+.|+..|+.+.... |.++..|..+...+.+.|++++|...++++...++ .+..++..+..++...|++++|+..
T Consensus 39 g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~ 115 (537)
T 3fp2_A 39 KNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASANESLGNFTDAMFD 115 (537)
T ss_dssp TCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45677888888876543 45778888888888888888888888888877653 4677888888888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCC-------CCCcc-------------------------
Q 011137 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF-------KADVI------------------------- 208 (493)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~------------------------- 208 (493)
|+.+.. .|+. ....+..+...+....|...++.+.... .|+..
T Consensus 116 ~~~~~~---~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (537)
T 3fp2_A 116 LSVLSL---NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD 190 (537)
T ss_dssp HHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSC
T ss_pred HHHHhc---CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccc
Confidence 863322 1221 1222333444445556666666553321 01100
Q ss_pred -----hHHHHHHHHHh--------cCChhHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 209 -----SYNVIANGWCL--------VKRTNKALEVLKEMVDRGLNPN-------LTTYNIVLKGYFRAGQIEEAWRFFLEM 268 (493)
Q Consensus 209 -----~~~~l~~~~~~--------~~~~~~A~~~~~~m~~~g~~p~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~ 268 (493)
....+...+.. .|++++|..+++++.+.... + ..++..+...+...|++++|.+.++++
T Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~ 269 (537)
T 3fp2_A 191 TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQES 269 (537)
T ss_dssp SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 12222222221 24788999999998876433 2 235677778888899999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 011137 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348 (493)
Q Consensus 269 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 348 (493)
.+.. |+...+..+...+...|++++|.+.|+++.+... .+..++..+...+...|++++|...++++.+.... +..
T Consensus 270 ~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~ 345 (537)
T 3fp2_A 270 INLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVY 345 (537)
T ss_dssp HHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSH
T ss_pred HhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHH
Confidence 8864 3478888899999999999999999999887643 36778899999999999999999999998876433 567
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC-----CCCCHHHHHHH
Q 011137 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV-----CLPNLDTYNIL 423 (493)
Q Consensus 349 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~p~~~~~~~l 423 (493)
.+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+.. .......+...
T Consensus 346 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 424 (537)
T 3fp2_A 346 PYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGK 424 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHH
Confidence 88889999999999999999999998864 4567788899999999999999999999886642 11122234444
Q ss_pred HHHHhcc----------CCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011137 424 ISSMFVR----------KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485 (493)
Q Consensus 424 i~~~~~~----------~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 485 (493)
...+... |++++ |...++++.+.. ..+...+..+...+...|++++|.+.++...+..
T Consensus 425 a~~~~~~~~~~~~~~~~~~~~~---A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 425 ATILARQSSQDPTQLDEEKFNA---AIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHTC----CCHHHHHH---HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhccchhhhHhHHHH---HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 5666666 88888 999999998753 3457788889999999999999999999887754
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=1.7e-20 Score=174.75 Aligned_cols=302 Identities=10% Similarity=0.027 Sum_probs=188.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 181 (493)
++..+..+...+.+.|++++|...|+++.+..+ .+..++..+...+...|++++|+..++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 355677777888888888888888888877643 467788888888888888888888888887653 446677788888
Q ss_pred HHHccCCHHHHHHHHHHhhcCCC---CCcchHHHH------------HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 011137 182 LLCKEKKVEKAYNLFKVFRGKFK---ADVISYNVI------------ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246 (493)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 246 (493)
++...|++++|...|++.....+ .+...+..+ ...+...|++++|.+.++++.+.... +...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHH
Confidence 88888888888888888776655 455555554 45666666666666666666654332 455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH----------
Q 011137 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN---------- 316 (493)
Q Consensus 247 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---------- 316 (493)
.+..++...|++++|...++++.+.. +.+..++..+...+...|++++|...|++..+... .+...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHH
Confidence 66666666666666666666666653 23556666666666666666666666666655321 1222222
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 011137 317 --AMIQVLCKKDSVENAILVFEEMVGKGYMPNS----TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390 (493)
Q Consensus 317 --~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 390 (493)
.+...+.+.|++++|...++++.+.... +. ..+..+..++...|++++|...++.+.+.. +.+...+..+..
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 314 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 1233455555555555555555543211 11 112334445555555555555555555442 234555555555
Q ss_pred HHHhcCCHHHHHHHHHHHhc
Q 011137 391 YFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 391 ~~~~~g~~~~a~~~~~~~~~ 410 (493)
.+...|++++|.+.|+++.+
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 55555555555555555555
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=3.8e-20 Score=172.39 Aligned_cols=319 Identities=8% Similarity=0.015 Sum_probs=260.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 011137 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG 216 (493)
Q Consensus 137 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 216 (493)
+...+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...|++.....+.+...|..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 45678888999999999999999999998764 55788999999999999999999999999887767788899999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCC--CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011137 217 WCLVKRTNKALEVLKEMVDRGLN--PNLTTYNIV------------LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282 (493)
Q Consensus 217 ~~~~~~~~~A~~~~~~m~~~g~~--p~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 282 (493)
+...|++++|.+.++++.+.... .+...+..+ ...+...|++++|.+.++++.+... .+...+..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHH
Confidence 99999999999999999876430 134444444 5788899999999999999988744 47888999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH-----------
Q 011137 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN----------- 351 (493)
Q Consensus 283 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------- 351 (493)
+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++...+.... +...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHH
Confidence 9999999999999999999998864 347788999999999999999999999999876322 333332
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 011137 352 -VVIRGLCHTGEMERALEFVGRMKDDECEPNV----QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426 (493)
Q Consensus 352 -~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 426 (493)
.+...+.+.|++++|...++++.+.. +.+. ..+..+...+...|++++|...+++..+.. +.+...|..+...
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEA 315 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 23566888999999999999998864 2233 335567888999999999999999998852 3378899999999
Q ss_pred HhccCCcccHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 011137 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPR-KFTFNRVLNGLL 466 (493)
Q Consensus 427 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~ 466 (493)
+...|++++ |.+.++++.+. .|+ ...+..+..+..
T Consensus 316 ~~~~g~~~~---A~~~~~~a~~~--~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 316 YLIEEMYDE---AIQDYEAAQEH--NENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHTTCHHH---HHHHHHHHHTT--CTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHH---HHHHHHHHHhc--CCCChHHHHHHHHHHH
Confidence 999999999 99999999975 566 455555554433
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=2.5e-20 Score=183.80 Aligned_cols=355 Identities=13% Similarity=0.053 Sum_probs=271.9
Q ss_pred HhhChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011137 79 LWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158 (493)
Q Consensus 79 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 158 (493)
...+.+.|++.|+.+.... |.+...+..+..++...|++++|...|+.+ ... |+ .....+..+...+...+|.
T Consensus 71 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~--~~--~~~~~~~~~~~~~~~~~a~ 143 (537)
T 3fp2_A 71 STGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTDAMFDLSVL-SLN--GD--FDGASIEPMLERNLNKQAM 143 (537)
T ss_dssp HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHHHHHHHHHH-hcC--CC--CChHHHHHHHHHHHHHHHH
Confidence 3467899999999886643 458899999999999999999999999744 322 22 1122234455566667888
Q ss_pred HHHHHHHhCC------CCCCHH------------------------------HHHHHHHHHHcc--------CCHHHHHH
Q 011137 159 KIFLSMHEHG------CRQSLN------------------------------SFNTILDLLCKE--------KKVEKAYN 194 (493)
Q Consensus 159 ~~~~~~~~~~------~~~~~~------------------------------~~~~ll~~~~~~--------g~~~~A~~ 194 (493)
..++.+.... ..|+.. ....+...+... |++++|..
T Consensus 144 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~ 223 (537)
T 3fp2_A 144 KVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTD 223 (537)
T ss_dssp HHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 8888775421 111111 222222222222 47889999
Q ss_pred HHHHhhcCCCCCcc-------hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011137 195 LFKVFRGKFKADVI-------SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267 (493)
Q Consensus 195 ~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 267 (493)
+|+.+....+.+.. ++..+...+...|++++|.+.++++.+.. |+...+..+...+...|++++|.+.+++
T Consensus 224 ~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 301 (537)
T 3fp2_A 224 MYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQK 301 (537)
T ss_dssp HHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99998877665543 46777788889999999999999999864 5578889999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 011137 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347 (493)
Q Consensus 268 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 347 (493)
+.+.... +..++..+...+...|++++|++.|+++.+... .+...+..+...+...|++++|...++++.+... .+.
T Consensus 302 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~ 378 (537)
T 3fp2_A 302 AVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLP 378 (537)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCT
T ss_pred HhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCh
Confidence 9887543 788999999999999999999999999988643 3567899999999999999999999999988743 356
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCC-----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhcCC
Q 011137 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDE-----CEPNVQTYNILIRYFCDA----------GEIERGLELFEKMGSGV 412 (493)
Q Consensus 348 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~ 412 (493)
..+..+...+...|++++|...++++.+.. .......+..+...+... |++++|...|+++.+..
T Consensus 379 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 458 (537)
T 3fp2_A 379 EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC
Confidence 788899999999999999999999987642 112233355566777777 99999999999998852
Q ss_pred CCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHC
Q 011137 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449 (493)
Q Consensus 413 ~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~ 449 (493)
+.+...+..+...+...|++++ |.+.+++..+.
T Consensus 459 -p~~~~~~~~l~~~~~~~g~~~~---A~~~~~~al~~ 491 (537)
T 3fp2_A 459 -PRSEQAKIGLAQLKLQMEKIDE---AIELFEDSAIL 491 (537)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHhccHHH---HHHHHHHHHHh
Confidence 3467889999999999999999 99999999985
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=4.7e-20 Score=169.72 Aligned_cols=292 Identities=11% Similarity=0.047 Sum_probs=189.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 011137 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG 216 (493)
Q Consensus 137 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 216 (493)
+...+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..+++++....+.+...|..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 44455556666666677777777666666543 33444555566666666777777777666665555566666667777
Q ss_pred HHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 011137 217 WCLVK-RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295 (493)
Q Consensus 217 ~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 295 (493)
+...| ++++|.+.|+++.+.... +...+..+...+...|++++|.+.++++.+.... +...+..+...|...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHH
Confidence 77777 677777777776655432 4556666777777777777777777776665332 44555556777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCChhhHHHHHHHHHhcCCHHHHH
Q 011137 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG--------YMPNSTTYNVVIRGLCHTGEMERAL 367 (493)
Q Consensus 296 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~~~~~~a~ 367 (493)
|.+.++++.+... .+...+..+...+...|++++|...++++.+.. ...+...+..+..++...|++++|.
T Consensus 178 A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 7777777766532 355667777777777777777777777666531 1223456777777777788888888
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH-hccCCcc
Q 011137 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM-FVRKKSD 434 (493)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~-~~~~~~~ 434 (493)
..++++.+.. +.+...+..+...+.+.|++++|.+.|+++.+.. +.+...+..+..++ ...|+.+
T Consensus 257 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 257 DYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 8887777653 3456677778888888888888888888777642 23566666666666 3444443
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=1.3e-19 Score=166.87 Aligned_cols=294 Identities=12% Similarity=-0.006 Sum_probs=250.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 179 (493)
+.++..+..+...+...|++++|..+++++.+..+ .+...+..++..+...|++++|...++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 45677888899999999999999999999987653 456677778888999999999999999998764 4567888999
Q ss_pred HHHHHccC-CHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 011137 180 LDLLCKEK-KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258 (493)
Q Consensus 180 l~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 258 (493)
...+...| ++++|...|++.....+.+...|..+...+...|++++|.+.++++.+.... +...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 99999999 9999999999998877778889999999999999999999999999876544 456777799999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHH
Q 011137 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG--------VLPSVATYNAMIQVLCKKDSVEN 330 (493)
Q Consensus 259 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~~~~~~ 330 (493)
++|.+.++++.+... .+..++..+...+...|++++|...++++.+.. .+....++..+...|...|++++
T Consensus 176 ~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999998754 478899999999999999999999999987631 13346789999999999999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH-HhcCCHH
Q 011137 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF-CDAGEIE 399 (493)
Q Consensus 331 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 399 (493)
|...+++..+.... +...+..+..++...|++++|...++++.+.. +.+...+..+..++ ...|+.+
T Consensus 255 A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 99999999876433 67788999999999999999999999998864 44778888888877 4556543
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=2.8e-17 Score=159.84 Aligned_cols=352 Identities=11% Similarity=0.072 Sum_probs=259.9
Q ss_pred CHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCH
Q 011137 102 SPSSFDHAIDLAAR----LRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVS----AGKADRAVKIFLSMHEHGCRQSL 173 (493)
Q Consensus 102 ~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~ 173 (493)
++..+..+...+.. .+++++|...|++..+.| +...+..+...|.. .+++++|++.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 66777777777777 788888888888877764 56777777777877 788888888888887754 55
Q ss_pred HHHHHHHHHHHc----cCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHH
Q 011137 174 NSFNTILDLLCK----EKKVEKAYNLFKVFRGKFKADVISYNVIANGWCL----VKRTNKALEVLKEMVDRGLNPNLTTY 245 (493)
Q Consensus 174 ~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~ 245 (493)
..+..|...|.. .+++++|...|++.... .+..++..+...|.. .++.++|+++|++..+.| +...+
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 666677777776 67888888888776543 256677777777776 678888888888887764 56777
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011137 246 NIVLKGYFR----AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV----VGEIKRARNVFDGMVNGGVLPSVATYNA 317 (493)
Q Consensus 246 ~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 317 (493)
..+...|.. .++.++|.++|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 260 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFR 260 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 777777777 778888888888877764 45666677777765 678888888888877653 4556666
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 011137 318 MIQVLCK----KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT-----GEMERALEFVGRMKDDECEPNVQTYNIL 388 (493)
Q Consensus 318 li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l 388 (493)
+...|.. .++.++|...|+...+.| +...+..+...|... ++.++|..++++..+.+ +...+..+
T Consensus 261 lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~l 334 (490)
T 2xm6_A 261 LGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANL 334 (490)
T ss_dssp HHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHH
Confidence 7677766 778888888888877664 455666677777766 78888888888887764 45667777
Q ss_pred HHHHHhcC---CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhc----cCCcccHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011137 389 IRYFCDAG---EIERGLELFEKMGSGVCLPNLDTYNILISSMFV----RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461 (493)
Q Consensus 389 ~~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 461 (493)
...|...| ++++|.+.|++..+.| +...+..+...|.. .++.++ |...+++..+.| +...+..+
T Consensus 335 g~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~---A~~~~~~A~~~~---~~~a~~~L 405 (490)
T 2xm6_A 335 GAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQ---AAIWMRKAAEQG---LSAAQVQL 405 (490)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH---HHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH---HHHHHHHHHhCC---CHHHHHHH
Confidence 77777655 6788888888887753 66777777777776 566666 888888888765 46667777
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhcC
Q 011137 462 LNGLLL----IGNQGLAKEILRLQSRCG 485 (493)
Q Consensus 462 ~~~~~~----~g~~~~a~~~~~~~~~~g 485 (493)
...|.. .++.++|.+.++...+.|
T Consensus 406 g~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 406 GEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 777777 788888888888777765
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=9.6e-20 Score=170.50 Aligned_cols=256 Identities=10% Similarity=-0.003 Sum_probs=123.6
Q ss_pred cCCHHHHHH-HHHHHHhCCCC-C--CHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHH
Q 011137 151 AGKADRAVK-IFLSMHEHGCR-Q--SLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKA 226 (493)
Q Consensus 151 ~g~~~~a~~-~~~~~~~~~~~-~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 226 (493)
.|++++|++ .+++....... | +...+..+...+...|++++|...|+++....+.+..+|..+...+...|++++|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 355555555 55544332110 1 2334555555666666666666666665555555555666666666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHhccC
Q 011137 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT---------------IVHGFGVVG 291 (493)
Q Consensus 227 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---------------li~~~~~~g 291 (493)
.+.|+++.+.... +..++..+..++...|++++|.+.++++...... +...+.. .+..+...|
T Consensus 118 ~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 118 ISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 6666666554322 4555666666666666666666666666554322 1111110 111222445
Q ss_pred CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 011137 292 EIKRARNVFDGMVNGGVLP-SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370 (493)
Q Consensus 292 ~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 370 (493)
++++|...|+++.+..... +..++..+...|...|++++|...++++.+... .+...+..+...+...|++++|...+
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555554432111 244455555555555555555555555544321 13344555555555555555555555
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 371 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
+++.+.. +.+...+..+...|.+.|++++|...|+++.+
T Consensus 275 ~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 275 RRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5554432 23344555555555555555555555554443
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=1.9e-19 Score=168.45 Aligned_cols=311 Identities=8% Similarity=-0.042 Sum_probs=231.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHH-HHHHhhcCCCC----CcchHHHHHHHHHhcCChhH
Q 011137 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKA----DVISYNVIANGWCLVKRTNK 225 (493)
Q Consensus 151 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~-~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~ 225 (493)
.+.++.+...++.+.+.+ ++ ++...|++++|.. .|++.....+. +...+..+...+...|++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~--~~---------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 82 (368)
T 1fch_A 14 VDFWDKLQAELEEMAKRD--AE---------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPN 82 (368)
T ss_dssp -------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHHHcCC--ch---------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHH
Confidence 344555555666655432 21 2344578899988 77765443222 35678899999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011137 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305 (493)
Q Consensus 226 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 305 (493)
|...|+++.+.... +..++..+..++...|++++|.+.++++.+... .+..++..+...|...|++++|.+.|+++.+
T Consensus 83 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 83 AVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp HHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999987544 778899999999999999999999999998754 3788999999999999999999999999998
Q ss_pred CCCCCCHHHHHH---------------HHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHH
Q 011137 306 GGVLPSVATYNA---------------MIQVLCKKDSVENAILVFEEMVGKGYMP-NSTTYNVVIRGLCHTGEMERALEF 369 (493)
Q Consensus 306 ~~~~~~~~~~~~---------------li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~ 369 (493)
.... +...+.. .+..+...|++++|...++++.+..... +..++..+...+...|++++|...
T Consensus 161 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~ 239 (368)
T 1fch_A 161 YTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDC 239 (368)
T ss_dssp TSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6432 2222221 2334448999999999999998864322 478899999999999999999999
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHC
Q 011137 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449 (493)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~ 449 (493)
++++.... +.+...+..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++ |...++++.+.
T Consensus 240 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~al~~ 314 (368)
T 1fch_A 240 FTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHRE---AVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH---HHHHHHHHHHH
T ss_pred HHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHh
Confidence 99998864 4568899999999999999999999999998752 3468899999999999999999 99999988864
Q ss_pred CCC---C-------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011137 450 GFM---P-------RKFTFNRVLNGLLLIGNQGLAKEILRL 480 (493)
Q Consensus 450 g~~---p-------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 480 (493)
.-. | ...+|..+..++...|+.++|..++++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 315 QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 211 1 168899999999999999999988763
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.85 E-value=1.4e-16 Score=154.95 Aligned_cols=339 Identities=10% Similarity=0.035 Sum_probs=289.7
Q ss_pred hhChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----c
Q 011137 80 WNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAAR----LRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVS----A 151 (493)
Q Consensus 80 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 151 (493)
..+..+|++.|+.+.... ++..+..+...+.. .+++++|...|++....| +...+..+...|.. .
T Consensus 56 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 356789999999887653 67889999999999 999999999999998875 67888888889988 8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHh----cCCh
Q 011137 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK----EKKVEKAYNLFKVFRGKFKADVISYNVIANGWCL----VKRT 223 (493)
Q Consensus 152 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 223 (493)
+++++|+..|++..+.| +...+..+..+|.. .++.++|.+.|++..+. .+..++..+...|.. .++.
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCH
Confidence 89999999999998865 56778888888887 78999999999987654 377889999999988 8999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHH
Q 011137 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFR----AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV----VGEIKR 295 (493)
Q Consensus 224 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~ 295 (493)
++|.++|++..+.| +...+..+...|.. .+++++|.+++++..+.+ +...+..+...|.. .++.++
T Consensus 204 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 204 AISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHH
Confidence 99999999999875 56788888888886 789999999999998874 55677778888877 899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---CHHHHH
Q 011137 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKK-----DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG---EMERAL 367 (493)
Q Consensus 296 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~ 367 (493)
|++.|++..+.| +...+..+...|... ++.++|...+++..+.| +...+..+...|...| +.++|.
T Consensus 278 A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~ 351 (490)
T 2xm6_A 278 ALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAV 351 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHH
Confidence 999999998764 566778888888887 89999999999999875 4567777888887766 789999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhc----cCCcccHHHH
Q 011137 368 EFVGRMKDDECEPNVQTYNILIRYFCD----AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV----RKKSDDLLVA 439 (493)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~~~~A 439 (493)
++|++..+.+ +...+..|...|.. .+++++|...|++..+.| +...+..+...|.. .++.++ |
T Consensus 352 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~---A 422 (490)
T 2xm6_A 352 EWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQ---A 422 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH---H
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHH---H
Confidence 9999999874 67888999999998 899999999999999864 67788888888887 677777 9
Q ss_pred HHHHHHHHHCCC
Q 011137 440 GKLLIEMVDRGF 451 (493)
Q Consensus 440 ~~~~~~m~~~g~ 451 (493)
...|++..+.|.
T Consensus 423 ~~~~~~A~~~~~ 434 (490)
T 2xm6_A 423 WAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHCCC
Confidence 999999998763
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=1.7e-19 Score=168.70 Aligned_cols=269 Identities=8% Similarity=-0.053 Sum_probs=209.8
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011137 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284 (493)
Q Consensus 205 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 284 (493)
.+...|..+...+.+.|++++|.++|+++.+.... +..++..+..++.+.|++++|++.|+++.+... .+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHH
Confidence 34566888888888999999999999988876543 677888888999999999999999998887643 3678888889
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHH
Q 011137 285 HGFGVVGEIKRARNVFDGMVNGGVL---------PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM-PNSTTYNVVI 354 (493)
Q Consensus 285 ~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li 354 (493)
.+|...|++++|+..|+++.+.... .....+..+...+...|++++|...++++.+.... .+...+..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 9999999999999999888764211 01223344577888999999999999999887432 2577888999
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcc
Q 011137 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434 (493)
Q Consensus 355 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 434 (493)
..+...|++++|+..++++.+.. +.+..+|..+...|...|++++|...|+++.+.. +.+..+|..+..+|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 99999999999999999998864 5578899999999999999999999999998852 335888999999999999999
Q ss_pred cHHHHHHHHHHHHHCC---CC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011137 435 DLLVAGKLLIEMVDRG---FM--------PRKFTFNRVLNGLLLIGNQGLAKEILRL 480 (493)
Q Consensus 435 ~~~~A~~~~~~m~~~g---~~--------p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 480 (493)
+ |...++++.+.. .. .+...|..+..++...|+.+.+.++.+.
T Consensus 299 ~---A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 E---AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp H---HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred H---HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9 889999887631 01 1357888999999999999999887754
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=2.2e-18 Score=161.06 Aligned_cols=276 Identities=10% Similarity=-0.018 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011137 103 PSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182 (493)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 182 (493)
...|..+...+.+.|++++|...|+++.+..+ .+..++..+...|...|++++|+..|+++.+.. +.+..++..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 34466666666666666666666666665532 355666666666666666666666666666543 3345566666666
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011137 183 LCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262 (493)
Q Consensus 183 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 262 (493)
|...|++++|...|+++....+.+...+..+. .....+..+...+...|++++|.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~A~ 197 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLEGVK 197 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC--------------------------------------------CCHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHHHHH
Confidence 66666666666666655433222222221110 00112222344444444444444
Q ss_pred HHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011137 263 RFFLEMKKRKCE-IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341 (493)
Q Consensus 263 ~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 341 (493)
+.++++.+.... .+..++..+...|...|++++|++.|+++.+.. +.+..+|..+..+|...|++++|...++++.+.
T Consensus 198 ~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 276 (365)
T 4eqf_A 198 ELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI 276 (365)
T ss_dssp HHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 444444443211 134444445555555555555555555544432 123444555555555555555555555555443
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011137 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC-----------EPNVQTYNILIRYFCDAGEIERGLELFEK 407 (493)
Q Consensus 342 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 407 (493)
.. .+...+..+..+|...|++++|...++++.+... ..+..+|..+..++...|+.+.+..+.++
T Consensus 277 ~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 277 QP-GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CT-TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 21 1344455555555555555555555555543210 01245566666666666666666665544
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=5.4e-18 Score=155.70 Aligned_cols=280 Identities=6% Similarity=-0.043 Sum_probs=160.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 181 (493)
+...+......+...|++++|..+++++.+..+ .+..++..+...+...|++++|.+.++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 334566777788888888888888888877643 467778888888888888888888888887754 456777778888
Q ss_pred HHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH-HH-HHHhcCCHH
Q 011137 182 LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV-LK-GYFRAGQIE 259 (493)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l-~~-~~~~~g~~~ 259 (493)
++...|++++|...++++....+.+...+..+.... |+......+ .. .+...|+++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHH
Confidence 888888888888888877765555554444441100 000001111 11 133444555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011137 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339 (493)
Q Consensus 260 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 339 (493)
+|.+.++++.+.... +..++..+...|...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.
T Consensus 156 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 156 ECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555554444222 44445555555555555555555555554432 1234455555555555555555555555555
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP-----------NVQTYNILIRYFCDAGEIERGLELFEKM 408 (493)
Q Consensus 340 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 408 (493)
+... .+...+..+..++...|++++|.+.++++.+..... +...|..+..++.+.|++++|..++++.
T Consensus 234 ~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 234 DINP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HcCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4321 134455555556666666666666666555432110 3456666666666666666666666544
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.81 E-value=5.4e-18 Score=155.69 Aligned_cols=277 Identities=10% Similarity=0.026 Sum_probs=183.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc
Q 011137 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV 220 (493)
Q Consensus 141 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 220 (493)
+..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...++++....+.+..++..+...+...
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHc
Confidence 3444455555555555555555555432 234445555555555555555555555554444344444455555555555
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHhccCCHHHHHH
Q 011137 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI-VH-GFGVVGEIKRARN 298 (493)
Q Consensus 221 ~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~~A~~ 298 (493)
|++++|.+.++++.+.... +...+..+... .++......+ .. .+...|++++|.+
T Consensus 103 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~ 159 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRECRT 159 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHHHH
Confidence 5555555555555443211 11111111000 0011111112 22 4788999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 011137 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378 (493)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 378 (493)
.++++.+... .+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+..
T Consensus 160 ~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 236 (327)
T 3cv0_A 160 LLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN- 236 (327)
T ss_dssp HHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 9999988643 3788899999999999999999999999987643 367789999999999999999999999998864
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-----------CHHHHHHHHHHHhccCCcccHHHHHHHHHHHH
Q 011137 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP-----------NLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447 (493)
Q Consensus 379 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-----------~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~ 447 (493)
+.+...+..+...|.+.|++++|.+.++++.+..... +...|..+..++...|+.++ |..++++.+
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~l 313 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL---VELTYAQNV 313 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH---HHHHTTCCS
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH---HHHHHHHHH
Confidence 4578899999999999999999999999987742111 47789999999999999999 877776543
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=5.1e-16 Score=152.52 Aligned_cols=392 Identities=10% Similarity=0.049 Sum_probs=280.1
Q ss_pred hhChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH-HHcCCHHHHH
Q 011137 80 WNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERY-VSAGKADRAV 158 (493)
Q Consensus 80 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~ 158 (493)
.++...|..+|+.+.... |.+...|...+..+.+.|++++|..+|+++.... |+...|...+... ...|+.+.|.
T Consensus 25 ~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~ 100 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYK 100 (530)
T ss_dssp SSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHH
T ss_pred hCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHH
Confidence 356788999999887643 5688899999999999999999999999998865 5777777777533 3457766665
Q ss_pred H----HHHHHHh-CCCC-CCHHHHHHHHHHHHc---------cCCHHHHHHHHHHhhcCCCCCc--chHHHHHHHHH---
Q 011137 159 K----IFLSMHE-HGCR-QSLNSFNTILDLLCK---------EKKVEKAYNLFKVFRGKFKADV--ISYNVIANGWC--- 218 (493)
Q Consensus 159 ~----~~~~~~~-~~~~-~~~~~~~~ll~~~~~---------~g~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~--- 218 (493)
+ +|+.... .|.. .+...|...+....+ .|+++.|..+|++... .|.+. ..|........
T Consensus 101 ~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~ 179 (530)
T 2ooe_A 101 EKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGIN 179 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhc
Confidence 4 6776654 2433 356778777776654 6889999999998876 33221 23433332211
Q ss_pred ----------hcCChhHHHHHHHHH------HhCC---CCCC--------HHHHHHHHHHHHhc----CCH----HHHHH
Q 011137 219 ----------LVKRTNKALEVLKEM------VDRG---LNPN--------LTTYNIVLKGYFRA----GQI----EEAWR 263 (493)
Q Consensus 219 ----------~~~~~~~A~~~~~~m------~~~g---~~p~--------~~~~~~l~~~~~~~----g~~----~~a~~ 263 (493)
..+++..|..++.++ .+.. +.|+ ...|...+...... ++. +.+..
T Consensus 180 ~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~ 259 (530)
T 2ooe_A 180 IHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMF 259 (530)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHH
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHH
Confidence 234566676666653 2221 2333 23455444333221 222 36778
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhc-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 011137 264 FFLEMKKRKCEIDVVTYTTIVHGFGV-------VGEIK-------RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329 (493)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 329 (493)
+|++..... +.+...|..++..+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+.|+++
T Consensus 260 ~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~ 338 (530)
T 2ooe_A 260 AYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYE 338 (530)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHH
Confidence 888888763 3478888888888875 78876 89999999986323346888999999999999999
Q ss_pred HHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHH
Q 011137 330 NAILVFEEMVGKGYMPN--STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY-FCDAGEIERGLELFE 406 (493)
Q Consensus 330 ~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~ 406 (493)
+|..+|+++.+. .|+ ...|...+..+.+.|++++|..+|++..+.. +.+...|...+.. +...|+.++|..+|+
T Consensus 339 ~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e 415 (530)
T 2ooe_A 339 KVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFE 415 (530)
T ss_dssp HHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 999999999986 343 2478888888888999999999999998763 2233344333222 346899999999999
Q ss_pred HHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 407 KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG-FMPR--KFTFNRVLNGLLLIGNQGLAKEILRLQSR 483 (493)
Q Consensus 407 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (493)
+..+. .+.+...|..++..+...|+.++ |..+|++.+..+ ..|+ ...|...+......|+.+.+..+.+.+.+
T Consensus 416 ~al~~-~p~~~~~~~~~~~~~~~~g~~~~---Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 416 LGLKK-YGDIPEYVLAYIDYLSHLNEDNN---TRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHTTTTCHHH---HHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHH-CCCCHHHHHHHHHHHHhCCCHhh---HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 98875 23368899999999999999988 999999999863 2332 45788888888889999999998887765
Q ss_pred c
Q 011137 484 C 484 (493)
Q Consensus 484 ~ 484 (493)
.
T Consensus 492 ~ 492 (530)
T 2ooe_A 492 A 492 (530)
T ss_dssp H
T ss_pred H
Confidence 4
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=4.9e-16 Score=150.51 Aligned_cols=368 Identities=9% Similarity=-0.070 Sum_probs=253.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSL--------SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH---- 167 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 167 (493)
......||.+..++...|++++|++.|++..+. ..+....+|..+...|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 334678999999999999999999999886542 12234678999999999999999999999887642
Q ss_pred C---CCCCHHHHHHHHHHHHc--cCCHHHHHHHHHHhhcCCCCCcchHHHHHHHH---HhcCChhHHHHHHHHHHhCCCC
Q 011137 168 G---CRQSLNSFNTILDLLCK--EKKVEKAYNLFKVFRGKFKADVISYNVIANGW---CLVKRTNKALEVLKEMVDRGLN 239 (493)
Q Consensus 168 ~---~~~~~~~~~~ll~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~A~~~~~~m~~~g~~ 239 (493)
. ......++.....++.. .+++++|...|++.....|.+...+..+...+ ...++.++|++.+++..+....
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 1 11234566665555554 45799999999998876666777777666654 4467888999999998876443
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011137 240 PNLTTYNIVLKGYFR----AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315 (493)
Q Consensus 240 p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 315 (493)
+..++..+...+.. .|+.++|.+.+++...... .+..++..+...|...|++++|++.|++..+... .+..++
T Consensus 208 -~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~ 284 (472)
T 4g1t_A 208 -NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLH 284 (472)
T ss_dssp -CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHH
T ss_pred -chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHH
Confidence 55666666655554 4678899999999888744 3788899999999999999999999999988533 356667
Q ss_pred HHHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 011137 316 NAMIQVLCKK-------------------DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376 (493)
Q Consensus 316 ~~li~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 376 (493)
..+..+|... +..+.|...++...+... .+...+..+...+...|++++|+..|++..+.
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 7666665432 235678888887776543 25567888999999999999999999999887
Q ss_pred CCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCC
Q 011137 377 ECEPNVQ--TYNILIR-YFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453 (493)
Q Consensus 377 ~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p 453 (493)
...+... .+..+.. .+...|+.++|+..|++..+. .|+.......+ +. +.+++++.++.. ..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~~---------~~---l~~~~~~~l~~~-p~ 428 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKMK---------DK---LQKIAKMRLSKN-GA 428 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHHH---------HH---HHHHHHHHHHHC-C-
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHH---------HH---HHHHHHHHHHhC-CC
Confidence 4333221 2333332 235789999999999999884 45543332222 12 445566665542 44
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 011137 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGR 486 (493)
Q Consensus 454 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 486 (493)
+..+|..+...+...|++++|.+.+++..+.|.
T Consensus 429 ~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 429 DSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp CTTHHHHHHHHHHHHHHCC--------------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 577889999999999999999999999888763
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=4.5e-17 Score=146.32 Aligned_cols=252 Identities=13% Similarity=0.128 Sum_probs=149.5
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 011137 111 DLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190 (493)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 190 (493)
+.....|+++.|+..++.+....+.........+.++|...|+++.|+..++. ..+|+..++..+...+...|+.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 34455677777777666654432211123445566677777777777665433 12445556666666677777777
Q ss_pred HHHHHHHHhhcC--CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 191 KAYNLFKVFRGK--FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268 (493)
Q Consensus 191 ~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 268 (493)
+|++.++++... .|.+...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777777665432 244455566666667777777777776665 235566666667777777777777777776
Q ss_pred HHCCCCCCHHH---HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011137 269 KKRKCEIDVVT---YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345 (493)
Q Consensus 269 ~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 345 (493)
.+.. |+... ...++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...+++..+....
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~- 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG- 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 6653 22211 112223334446677777777776665 3345666666666677777777777777666655322
Q ss_pred ChhhHHHHHHHHHhcCCHHH-HHHHHHHhhhC
Q 011137 346 NSTTYNVVIRGLCHTGEMER-ALEFVGRMKDD 376 (493)
Q Consensus 346 ~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~ 376 (493)
+..++..++..+...|+.++ +.++++++.+.
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 45566666666666666654 45666666654
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=2.2e-18 Score=158.20 Aligned_cols=282 Identities=9% Similarity=0.068 Sum_probs=133.4
Q ss_pred hChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011137 81 NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160 (493)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 160 (493)
.+.+.|.++++.+ +++.+|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..
T Consensus 17 ~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 17 GNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3457888998877 23459999999999999999999999653 5777999999999999999999998
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 011137 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240 (493)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 240 (493)
++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|..+|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT------CC----------------CTTTHHHHHHHT-------
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 8777764 3557788899999999999999887774 367789999999999999999999999977
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011137 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320 (493)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 320 (493)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ....-...++.
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~ 215 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELIN 215 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHH
Confidence 37899999999999999999999988 278999999999999999999966655432 23444557889
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCC------CHHHHHHHHHHHH
Q 011137 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD-ECEP------NVQTYNILIRYFC 393 (493)
Q Consensus 321 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~ 393 (493)
.|.+.|++++|..+++...... .-....|+-+.-+|++- ++++..+.++...+. +++| +...|..+...|.
T Consensus 216 ~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 216 YYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988664 33566777777777764 344444444333322 3333 4556888999999
Q ss_pred hcCCHHHHHHHH
Q 011137 394 DAGEIERGLELF 405 (493)
Q Consensus 394 ~~g~~~~a~~~~ 405 (493)
..++++.|....
T Consensus 294 ~~~e~d~A~~tm 305 (449)
T 1b89_A 294 KYEEYDNAIITM 305 (449)
T ss_dssp HTTCHHHHHHHH
T ss_pred hhchHHHHHHHH
Confidence 999999887643
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=3e-18 Score=157.28 Aligned_cols=280 Identities=11% Similarity=0.117 Sum_probs=135.4
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 011137 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193 (493)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 193 (493)
.+.|+.++|.++++++. ++.+|..++.++.+.|++++|++.|.+. +|...|..++..+...|++++|+
T Consensus 14 ~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 46688999999999982 3459999999999999999999999652 56778999999999999999999
Q ss_pred HHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011137 194 NLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273 (493)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 273 (493)
.+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|++++|...|..+
T Consensus 82 ~yl~~ark~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 82 KYLQMARKK-ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHHh-CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 988877664 4567889999999999999999998885 367789999999999999999999999976
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 011137 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353 (493)
Q Consensus 274 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 353 (493)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHH
Confidence 47999999999999999999999998 27899999999999999999996655442 2344446678
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC-CCCC------CHHHHHHHHHH
Q 011137 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG-VCLP------NLDTYNILISS 426 (493)
Q Consensus 354 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p------~~~~~~~li~~ 426 (493)
+..|.+.|.+++|..+++...... +-....|+-|..+|++- ++++.++.++..... +++| +...|..++-.
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999776 66788899888888764 334444444333222 2333 46789999999
Q ss_pred HhccCCccc
Q 011137 427 MFVRKKSDD 435 (493)
Q Consensus 427 ~~~~~~~~~ 435 (493)
|.+.++++.
T Consensus 292 y~~~~e~d~ 300 (449)
T 1b89_A 292 YDKYEEYDN 300 (449)
T ss_dssp HHHTTCHHH
T ss_pred HHhhchHHH
Confidence 999999998
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=5.9e-17 Score=145.56 Aligned_cols=249 Identities=13% Similarity=0.111 Sum_probs=122.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChh
Q 011137 147 RYVSAGKADRAVKIFLSMHEHGCRQS--LNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTN 224 (493)
Q Consensus 147 ~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 224 (493)
-....|+++.|+..++...... |+ ......+..+|...|+++.|+..++. ..+|+..++..+...+...++.+
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHH
Confidence 3444566666666655543321 22 22334455566666666666543322 23444455555566666666666
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 011137 225 KALEVLKEMVDRGLNP-NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303 (493)
Q Consensus 225 ~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 303 (493)
+|++.++++...+..| +...+..+..++...|++++|++.+++ +.+...+..++..|.+.|++++|.+.|+++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666665544333 233444455556666666666666554 234555555555555555555555555555
Q ss_pred HHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 011137 304 VNGGVLPSVATY---NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380 (493)
Q Consensus 304 ~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 380 (493)
.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++.+.. +-
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 5432 221111 111122223345555555555554441 2244444555555555555555555555544432 22
Q ss_pred CHHHHHHHHHHHHhcCCHHH-HHHHHHHHhc
Q 011137 381 NVQTYNILIRYFCDAGEIER-GLELFEKMGS 410 (493)
Q Consensus 381 ~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~ 410 (493)
+..++..++..+...|+.++ +.++++++.+
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44445555555555554433 3344444444
No 31
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=3.7e-14 Score=145.28 Aligned_cols=361 Identities=13% Similarity=0.150 Sum_probs=239.4
Q ss_pred CCCHHHHHHHHHHHh--hChHHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH
Q 011137 66 HWTPQLVDQIIKRLW--NHALKALHFFNILSYHPT-YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142 (493)
Q Consensus 66 ~~~~~~~~~~l~~~~--~~~~~A~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 142 (493)
..+|..++-+.+.+- +.+..|+++++.+...+. +..+....+.++....+. +..+..+..+++... + ..
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---AP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HH
Confidence 456666666666543 446777777777764433 334556666666666666 455555555555421 1 23
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCC
Q 011137 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKR 222 (493)
Q Consensus 143 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 222 (493)
.+...+...|.+++|..+|++.. ......+.++. ..+++++|.++.++.. +..+|..+..++...|+
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn-----~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN-----EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCC
Confidence 36667777888888888888752 12222233332 5677888888777552 56788888888888888
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 011137 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302 (493)
Q Consensus 223 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 302 (493)
+++|++.|.+. -|...|..++.++.+.|++++|.+++....+... +....+.++.+|++.+++++...+.
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHhhcCHHHHHHHH--
Confidence 88888888664 2677788888888888888888888887776542 3333335888888888877543332
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH
Q 011137 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382 (493)
Q Consensus 303 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 382 (493)
+ .++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++.. +.
T Consensus 1191 --~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~ 1250 (1630)
T 1xi4_A 1191 --N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------ST 1250 (1630)
T ss_pred --h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CH
Confidence 2 245666777888888888888888888874 378888888888888888888888763 55
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 011137 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK-FTFNRV 461 (493)
Q Consensus 383 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l 461 (493)
.+|..+..+|...|++..|......+. .+...+..++..|...|.+++ |+.+++..+.. .+.. ..|+.+
T Consensus 1251 ~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feE---AI~LlE~aL~L--eraH~gmftEL 1320 (1630)
T 1xi4_A 1251 RTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEE---LITMLEAALGL--ERAHMGMFTEL 1320 (1630)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHH---HHHHHHHHhcc--ChhHhHHHHHH
Confidence 778888888888888888877665432 356667788888888888888 88888777643 3333 334334
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 011137 462 LNGLLLIGNQGLAKEILRLQSRCGRLP 488 (493)
Q Consensus 462 ~~~~~~~g~~~~a~~~~~~~~~~g~~~ 488 (493)
...+.+ -+.++..+.++.+...+-.|
T Consensus 1321 aiLyaK-y~peklmEhlk~f~~rini~ 1346 (1630)
T 1xi4_A 1321 AILYSK-FKPQKMREHLELFWSRVNIP 1346 (1630)
T ss_pred HHHHHh-CCHHHHHHHHHHHHHhcccc
Confidence 433333 34444444444444444333
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=1.8e-18 Score=171.27 Aligned_cols=116 Identities=16% Similarity=0.136 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 011137 312 VATYNAMIQVLCKKDSVENAILVFEEMVG---KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388 (493)
Q Consensus 312 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 388 (493)
..+|+++|++||+.|++++|..+|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 44677777777777777777777766553 366777777777777777777777777777777777777777777777
Q ss_pred HHHHHhcCC-HHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 011137 389 IRYFCDAGE-IERGLELFEKMGSGVCLPNLDTYNILISSM 427 (493)
Q Consensus 389 ~~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 427 (493)
|.++|+.|+ .++|.++|++|.+.|+.||..+|++++.++
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 777777766 356677777777777777777777666543
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=2.4e-18 Score=170.47 Aligned_cols=115 Identities=18% Similarity=0.228 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhhc----CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 011137 173 LNSFNTILDLLCKEKKVEKAYNLFKVFRG----KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248 (493)
Q Consensus 173 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 248 (493)
..+||++|++||+.|++++|.++|+.|.+ +..||+.+||+||.+|++.|++++|.++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34667777777777777777776665542 35666666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011137 249 LKGYFRAGQ-IEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287 (493)
Q Consensus 249 ~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 287 (493)
|.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 666666665 356666666666666666666666665443
No 34
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=4.3e-14 Score=138.80 Aligned_cols=371 Identities=6% Similarity=-0.016 Sum_probs=262.8
Q ss_pred CHHHHHHHHHHH--hhChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH-HhcCChHHHHH----HHHHHhh-CCCC-CCH
Q 011137 68 TPQLVDQIIKRL--WNHALKALHFFNILSYHPTYAHSPSSFDHAIDLA-ARLRDYRTVWT----LVHRMKS-LSLG-PTQ 138 (493)
Q Consensus 68 ~~~~~~~~l~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~~~~a~~----~~~~~~~-~~~~-~~~ 138 (493)
++..-...+... .++.+.|..+|+.+.... |+...|...+... ...|+.+.|.+ +|+.... .|.. .+.
T Consensus 45 ~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~---p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~ 121 (530)
T 2ooe_A 45 SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV---LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSY 121 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC---CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccH
Confidence 444444444433 357789999999987653 4788888888644 45677777665 7776654 2433 467
Q ss_pred HHHHHHHHHHHH---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-------------HccCCHHHHHHHH
Q 011137 139 KTFAIIAERYVS---------AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL-------------CKEKKVEKAYNLF 196 (493)
Q Consensus 139 ~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-------------~~~g~~~~A~~~~ 196 (493)
..|...+....+ .|++++|..+|++..+.........|....... .+.+++..|..++
T Consensus 122 ~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~ 201 (530)
T 2ooe_A 122 QIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVA 201 (530)
T ss_dssp HHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHH
Confidence 788888877655 789999999999998832111123443332211 1345677777776
Q ss_pred HHh------hcC----CCCC--------cchHHHHHHHHHhc----CCh----hHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011137 197 KVF------RGK----FKAD--------VISYNVIANGWCLV----KRT----NKALEVLKEMVDRGLNPNLTTYNIVLK 250 (493)
Q Consensus 197 ~~~------~~~----~~~~--------~~~~~~l~~~~~~~----~~~----~~A~~~~~~m~~~g~~p~~~~~~~l~~ 250 (493)
+.+ ... .+|+ ...|...+...... ++. ..+..+|++....... +...|...+.
T Consensus 202 ~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~ 280 (530)
T 2ooe_A 202 KEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQ 280 (530)
T ss_dssp HHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 652 121 2333 13555555433222 232 3778899998875333 6778888888
Q ss_pred HHHh-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC--HHH
Q 011137 251 GYFR-------AGQIE-------EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS--VAT 314 (493)
Q Consensus 251 ~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~ 314 (493)
.+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ ...
T Consensus 281 ~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 358 (530)
T 2ooe_A 281 YLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLV 358 (530)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHH
T ss_pred HHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHH
Confidence 8775 79987 89999999987323446889999999999999999999999999985 343 358
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 011137 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG-LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393 (493)
Q Consensus 315 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 393 (493)
|...+..+.+.|++++|..+|++..+.... +...|...... +...|+.++|..+|+...+.. +.+...|..++..+.
T Consensus 359 ~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~ 436 (530)
T 2ooe_A 359 YIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLS 436 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 999999999999999999999999986322 23333332222 336899999999999998763 446889999999999
Q ss_pred hcCCHHHHHHHHHHHhcCCC-CC--CHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHC
Q 011137 394 DAGEIERGLELFEKMGSGVC-LP--NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449 (493)
Q Consensus 394 ~~g~~~~a~~~~~~~~~~~~-~p--~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~ 449 (493)
+.|+.++|..+|++....+. .| ....|...+......|+.+. +.++..++.+.
T Consensus 437 ~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~---~~~~~~r~~~~ 492 (530)
T 2ooe_A 437 HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS---ILKVEKRRFTA 492 (530)
T ss_dssp TTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHH---HHHHHHHHHHH
T ss_pred hCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHH
Confidence 99999999999999988632 23 25588888888888899888 88888888764
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.71 E-value=1.3e-15 Score=130.61 Aligned_cols=199 Identities=12% Similarity=0.047 Sum_probs=108.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 179 (493)
|+++..+..+...+.+.|++++|...|++..+..+ .+...+..+...+.+.|++++|+..|++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 34556666666677777777777777777666543 456666666777777777777777777666553 3455566666
Q ss_pred HHHHHcc-----------CCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 011137 180 LDLLCKE-----------KKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248 (493)
Q Consensus 180 l~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 248 (493)
..++... |++++|+..|++..+..|.+...|..+...+...|++++|++.|++..+.. .+...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 6666666 555555555555554444455555555555555555555555555555544 345555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 011137 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303 (493)
Q Consensus 249 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 303 (493)
..++...|++++|+..+++..+.... +...+..+...+...|++++|+..|++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55555555555555555555554322 4445555555555555555555555443
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=2e-14 Score=139.14 Aligned_cols=365 Identities=10% Similarity=-0.001 Sum_probs=245.2
Q ss_pred HHHHHHhhChHHHHHHHHHhhc-------CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-----C--CCCCHH
Q 011137 74 QIIKRLWNHALKALHFFNILSY-------HPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSL-----S--LGPTQK 139 (493)
Q Consensus 74 ~~l~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~ 139 (493)
..+.....+.++|++.|+.... ....+....+|+.+..+|...|++++|...+++.... + ......
T Consensus 58 g~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~ 137 (472)
T 4g1t_A 58 AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPE 137 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHH
Confidence 4455566788889988877632 1122345778999999999999999999999887542 1 112456
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHccCCHHHHHHHHHHhhcCCCCCcchHHHHH
Q 011137 140 TFAIIAERYVSA--GKADRAVKIFLSMHEHGCRQSLNSFNTILDL---LCKEKKVEKAYNLFKVFRGKFKADVISYNVIA 214 (493)
Q Consensus 140 ~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 214 (493)
++.....++... +++++|++.|++..+.. +.+...+..+..+ +...++.++|++.+++.....+.+..++..+.
T Consensus 138 ~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~ 216 (472)
T 4g1t_A 138 LDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLA 216 (472)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 777666666554 47999999999998764 3455666555554 44567888899998887766666777777776
Q ss_pred HHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 011137 215 NGWCL----VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290 (493)
Q Consensus 215 ~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 290 (493)
..+.. .|++++|.+++++....... +..++..+...+...|++++|...+++..+.... +..++..+..+|...
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~ 294 (472)
T 4g1t_A 217 LKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAK 294 (472)
T ss_dssp HHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHH
Confidence 65554 46788999999998876544 6778899999999999999999999999887443 677777776665432
Q ss_pred -------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh--h
Q 011137 291 -------------------GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST--T 349 (493)
Q Consensus 291 -------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~ 349 (493)
+..+.|...|++..+... .+..++..+...|...|++++|...|++..+....+... .
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~ 373 (472)
T 4g1t_A 295 VFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLL 373 (472)
T ss_dssp HHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHH
Confidence 235678888888776533 355678889999999999999999999998875433221 2
Q ss_pred HHHHHH-HHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHh
Q 011137 350 YNVVIR-GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428 (493)
Q Consensus 350 ~~~li~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 428 (493)
+..+.. .....|+.++|+..|.+..+. .|+..... +....+.+++++..+. -+.+..+|..+..+|.
T Consensus 374 ~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l~~~~~~~l~~-~p~~~~~~~~LG~~~~ 441 (472)
T 4g1t_A 374 HLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKLQKIAKMRLSK-NGADSEALHVLAFLQE 441 (472)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHHHHHHHHHHHH-CC-CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 222222 235789999999999999886 34432221 2234445556655553 2346789999999999
Q ss_pred ccCCcccHHHHHHHHHHHHHCC-CCCCHHH
Q 011137 429 VRKKSDDLLVAGKLLIEMVDRG-FMPRKFT 457 (493)
Q Consensus 429 ~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~ 457 (493)
..|++++ |++.|++.++.| ..|+..+
T Consensus 442 ~~g~~~~---A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 442 LNEKMQQ---ADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp HHHHCC------------------------
T ss_pred HcCCHHH---HHHHHHHHHhcCCCCCcHhh
Confidence 9999999 999999999764 2344433
No 37
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.70 E-value=4.4e-13 Score=137.49 Aligned_cols=290 Identities=11% Similarity=0.116 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHH
Q 011137 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGW 217 (493)
Q Consensus 138 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (493)
..+|..+..++...|++++|++.|.+. .|...|..++.++.+.|++++|.++|....+.. ++....+.++.+|
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~-~e~~Idt~LafaY 1177 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-RESYVETELIFAL 1177 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-ccccccHHHHHHH
Confidence 445555555555555555555555332 234444455555555555555555554443322 2222222355555
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 011137 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297 (493)
Q Consensus 218 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 297 (493)
++.+++++...+. + .++...|..+...|...|++++|..+|... ..|..+...|.+.|++++|.
T Consensus 1178 AKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AI 1241 (1630)
T 1xi4_A 1178 AKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV 1241 (1630)
T ss_pred HhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHH
Confidence 5555544322221 1 123344444555555555555555555543 24555555555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 011137 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377 (493)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 377 (493)
+.+++. .+..+|..+-.+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++......
T Consensus 1242 EaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A 1242 DGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE 1310 (1630)
T ss_pred HHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 555544 2445555555555555555555544432 12245556677777777788888888877776554
Q ss_pred CCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHhcCCCCC------CHHHHHHHHHHHhccCCcccHHHHHH--------
Q 011137 378 CEPNVQTYNILIRYFCDA--GEIERGLELFEKMGSGVCLP------NLDTYNILISSMFVRKKSDDLLVAGK-------- 441 (493)
Q Consensus 378 ~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~p------~~~~~~~li~~~~~~~~~~~~~~A~~-------- 441 (493)
+-+...|+-|...|++. ++..++.+.|..-.. +++ +...|..++-.|.+.|+++. |..
T Consensus 1311 -raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dn---A~~tm~~h~~~ 1384 (1630)
T 1xi4_A 1311 -RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDN---AIITMMNHPTD 1384 (1630)
T ss_pred -hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHH---HHHHHHhccHh
Confidence 33455666666666543 344444444443222 222 45667778888887777777 441
Q ss_pred -----HHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 011137 442 -----LLIEMVDRGFMPRKFTFNRVLNGLLLIG 469 (493)
Q Consensus 442 -----~~~~m~~~g~~p~~~~~~~l~~~~~~~g 469 (493)
.|.+.+.+ ..|...|...+.-|...+
T Consensus 1385 a~~~~~Fk~~i~k--v~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1385 AWKEGQFKDIITK--VANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred hhhhHHHHHHhcc--cccHHHHHHHHHHHHhhC
Confidence 22222222 345666666666665555
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=4.9e-15 Score=130.82 Aligned_cols=156 Identities=10% Similarity=0.112 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011137 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322 (493)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 322 (493)
.++..+...+...|++++|.+.++++.+.. ++. ..+...|++++|...++++..... .+...+..+...+
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHH
Confidence 344444444555555555555555444432 121 223344455555555555554311 1233445555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011137 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402 (493)
Q Consensus 323 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 402 (493)
...|++++|...++++.+.... +...+..+..++...|++++|...++.+.+.. +.+...|..+...+.+.|++++|.
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 5555555555555555544221 34455555555556666666666666555542 334555556666666666666666
Q ss_pred HHHHHHhc
Q 011137 403 ELFEKMGS 410 (493)
Q Consensus 403 ~~~~~~~~ 410 (493)
+.+++..+
T Consensus 228 ~~~~~a~~ 235 (258)
T 3uq3_A 228 ETLDAART 235 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655544
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.70 E-value=2.1e-15 Score=129.39 Aligned_cols=198 Identities=13% Similarity=0.041 Sum_probs=105.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 011137 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIAN 215 (493)
Q Consensus 136 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 215 (493)
++...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++.....|.+...+..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 345556666666666666666666666666543 3455666666666666666666666666665555555566666666
Q ss_pred HHHhc-----------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011137 216 GWCLV-----------KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284 (493)
Q Consensus 216 ~~~~~-----------~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 284 (493)
.+... |++++|+..+++..+..+. +...+..+..++...|++++|+..+++..+.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 66666 5555555555555544322 34455555555555555555555555555554 3555555555
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338 (493)
Q Consensus 285 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 338 (493)
.+|...|++++|+..|++..+... .+...+..+...+...|++++|...+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555555555555555554321 23445555555555555555555555443
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=6.6e-15 Score=129.96 Aligned_cols=223 Identities=12% Similarity=0.052 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCC-------cchHHH
Q 011137 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKAD-------VISYNV 212 (493)
Q Consensus 140 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~ 212 (493)
.+..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...+++.....+.+ ..+|..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444444455555555555555544443 344444445555555555555555554433221111 344555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 011137 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292 (493)
Q Consensus 213 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 292 (493)
+...+...|++++|.+.|+++.+.. |+. ..+.+.|++++|.+.++.+..... .+...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhcC
Confidence 5555555555555555555555432 221 234444556666666666555422 244555556666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011137 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372 (493)
Q Consensus 293 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 372 (493)
+++|+..|+++.+... .+..++..+...|...|++++|...++...+... .+...+..+..++...|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 6666666666655422 2455666666666666666666666666655432 2355566666666666666666666666
Q ss_pred hhhC
Q 011137 373 MKDD 376 (493)
Q Consensus 373 ~~~~ 376 (493)
+.+.
T Consensus 233 a~~~ 236 (258)
T 3uq3_A 233 ARTK 236 (258)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6543
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.67 E-value=1.5e-14 Score=138.56 Aligned_cols=376 Identities=10% Similarity=0.024 Sum_probs=246.3
Q ss_pred HHhhChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC--
Q 011137 78 RLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDY---RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAG-- 152 (493)
Q Consensus 78 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 152 (493)
.-..+.+.|++.|+.+.... ++..+..+...+...|++ ++|...|++.... +...+..+...+...+
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHHHTC--C
T ss_pred HhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCC
Confidence 33467789999998886543 445666677777778888 8999999988754 5556666666555555
Q ss_pred ---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH---HHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHH
Q 011137 153 ---KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA---YNLFKVFRGKFKADVISYNVIANGWCLVKRTNKA 226 (493)
Q Consensus 153 ---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 226 (493)
++++|+..|++..+.|. ...+..|...|...+..+.+ .+.+..... ..+...+..+...|...+.++++
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGG
T ss_pred CCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccC
Confidence 78999999999998763 23677777888776654443 333433322 12567888889999988866655
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----CCHHHHHHH
Q 011137 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAG---QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV----GEIKRARNV 299 (493)
Q Consensus 227 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~ 299 (493)
......+.+.-...+...+..+...|.+.| +.++|++.|++..+.|.. +...+..|...|... +++++|++.
T Consensus 161 ~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 161 LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 555333332211223348888999999999 999999999999998754 666556777777655 799999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-----CHHHHHHHHH
Q 011137 300 FDGMVNGGVLPSVATYNAMIQV-L--CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG-----EMERALEFVG 371 (493)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~ 371 (493)
|++.. . -+...+..+... | ...++.++|...|++..+.| +...+..+...|. .| ++++|+.+|+
T Consensus 240 ~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 240 LEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 99987 3 356667777776 4 56899999999999999886 6677777777776 55 9999999999
Q ss_pred HhhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhc-cCCcccHHHHHHHHHHH
Q 011137 372 RMKDDECEPNVQTYNILIRYFCD----AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV-RKKSDDLLVAGKLLIEM 446 (493)
Q Consensus 372 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~-~~~~~~~~~A~~~~~~m 446 (493)
+.. .| +...+..|...|.. ..++++|...|++..+.| +......|...|.. .|-..+..+|..+++..
T Consensus 312 ~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 312 KAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp TTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred HHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 988 44 67788888888876 349999999999999876 34455566666653 12223344499999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483 (493)
Q Consensus 447 ~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (493)
.+.|. ++.......+......++..+|.++.+...+
T Consensus 385 ~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 385 KAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 98873 3333333333333334566777777765444
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.67 E-value=3.5e-13 Score=120.15 Aligned_cols=224 Identities=8% Similarity=0.005 Sum_probs=143.3
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011137 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR----AGQIEEAWRFFLEMKKRKCEIDVVTYT 281 (493)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 281 (493)
+..++..+...+...|++++|++.|++..+.+ +..++..+...+.. .+++++|.+.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44455566666666666666666666666522 34555566666666 666666666666666654 555666
Q ss_pred HHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 011137 282 TIVHGFGV----VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK----KDSVENAILVFEEMVGKGYMPNSTTYNVV 353 (493)
Q Consensus 282 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 353 (493)
.+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 66666666 666677776666666653 55566666666666 667777777776666654 44555566
Q ss_pred HHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 011137 354 IRGLCH----TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD----AGEIERGLELFEKMGSGVCLPNLDTYNILIS 425 (493)
Q Consensus 354 i~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 425 (493)
...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666665 667777777777776653 45566667777776 777777777777776653 3556666666
Q ss_pred HHhc----cCCcccHHHHHHHHHHHHHCC
Q 011137 426 SMFV----RKKSDDLLVAGKLLIEMVDRG 450 (493)
Q Consensus 426 ~~~~----~~~~~~~~~A~~~~~~m~~~g 450 (493)
.|.. .++.++ |.+.+++..+.|
T Consensus 227 ~~~~g~~~~~~~~~---A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQ---AIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTT---HHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHH---HHHHHHHHHHcC
Confidence 6666 667777 777777776653
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.67 E-value=2e-14 Score=133.45 Aligned_cols=218 Identities=10% Similarity=0.028 Sum_probs=127.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGK-ADRAVKIFLSMHEHGCRQSLNSFNTIL 180 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~ll 180 (493)
+...|+.+..++.+.|++++|+..+++.....+ -+..+|..+..++...|+ +++|+..|+++.+.. +.+...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 345666666666677777777777777666543 356666666666666775 777777777666653 34556666666
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHH
Q 011137 181 DLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR-AGQIE 259 (493)
Q Consensus 181 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~g~~~ 259 (493)
.++...|++++|+..|++.....+.+..+|..+..++...|++++|+..++++++.... +...|+.+..++.+ .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 66666677777766666666555556666666666666666666666666666665443 55666666666666 44435
Q ss_pred HH-----HHHHHHHHHCCCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 011137 260 EA-----WRFFLEMKKRKCEIDVVTYTTIVHGFGVVG--EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325 (493)
Q Consensus 260 ~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 325 (493)
+| +..+++....... +...|..+...+...| ++++|++.+.++ +. .+.+...+..+..+|.+.
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHH
Confidence 55 3445555444322 4445555555555544 345555555444 21 222334444444444443
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.67 E-value=2.3e-14 Score=127.66 Aligned_cols=229 Identities=12% Similarity=0.065 Sum_probs=101.5
Q ss_pred HHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcC
Q 011137 179 ILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP--NLTTYNIVLKGYFRAG 256 (493)
Q Consensus 179 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g 256 (493)
....+...|++++|...|++.....+.+...+..+...+...|++++|++.+++..+.+..+ ....|..+...+...|
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 33344444444444444444443333344444444444444444444444444444421111 1122444444444445
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011137 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE 336 (493)
Q Consensus 257 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 336 (493)
++++|++.+++..+.... +..++..+...|...|++++|++.|++..+.. +.+...+..+...+...+++++|...++
T Consensus 89 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp CHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555444443222 33444445555555555555555555444431 1233344444412222335555555555
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHhhhCC-CCCC------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 011137 337 EMVGKGYMPNSTTYNVVIRGLCHTGE---MERALEFVGRMKDDE-CEPN------VQTYNILIRYFCDAGEIERGLELFE 406 (493)
Q Consensus 337 ~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~ 406 (493)
++.+.... +...+..+..++...|+ +++|...++++.+.. -.|+ ...|..+...|...|++++|.+.|+
T Consensus 167 ~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 245 (272)
T 3u4t_A 167 KVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWK 245 (272)
T ss_dssp HHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55443211 23344444444444444 444555554444320 0111 1345555566666666666666666
Q ss_pred HHhc
Q 011137 407 KMGS 410 (493)
Q Consensus 407 ~~~~ 410 (493)
++.+
T Consensus 246 ~al~ 249 (272)
T 3u4t_A 246 NILA 249 (272)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6655
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.67 E-value=2.4e-14 Score=127.53 Aligned_cols=244 Identities=11% Similarity=0.040 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcc----hHHHHH
Q 011137 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVI----SYNVIA 214 (493)
Q Consensus 139 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~l~ 214 (493)
..+......+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...+++... .+++.. +|..+.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG 81 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence 344555666677777777777777776643 33444666666777777777777777776655 222332 266777
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 011137 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294 (493)
Q Consensus 215 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 294 (493)
..+...|++++|++.|++..+.... +..++..+...+...|++++|.+.+++..+.. +.+...+..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777665433 45667777777777777777777777766652 235556666662333334777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCC------hhhHHHHHHHHHhcCCHH
Q 011137 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS---VENAILVFEEMVGKG-YMPN------STTYNVVIRGLCHTGEME 364 (493)
Q Consensus 295 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~~~~~ 364 (493)
+|.+.|+++.+... .+...+..+..++...|+ +++|...+++..+.. ..|+ ...|..+...|...|+++
T Consensus 160 ~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 77777777766422 235566666666666666 666777776665441 1122 135556666667777777
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHH
Q 011137 365 RALEFVGRMKDDECEPNVQTYNIL 388 (493)
Q Consensus 365 ~a~~~~~~~~~~~~~~~~~~~~~l 388 (493)
+|.+.++++.+.. +-+...+..+
T Consensus 239 ~A~~~~~~al~~~-p~~~~a~~~l 261 (272)
T 3u4t_A 239 KADAAWKNILALD-PTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccHHHHHHHh
Confidence 7777777776653 3334444333
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.66 E-value=1.9e-13 Score=121.79 Aligned_cols=222 Identities=12% Similarity=0.047 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 011137 173 LNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCL----VKRTNKALEVLKEMVDRGLNPNLTTYNIV 248 (493)
Q Consensus 173 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 248 (493)
...+..+...+...|++++|...|++... +.+..++..+...|.. .+++++|++.|++..+.+ +...+..+
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 33444444445555555555555544433 2233445555555555 555555555555555543 44555555
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011137 249 LKGYFR----AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV----VGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320 (493)
Q Consensus 249 ~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 320 (493)
...|.. .+++++|++.+++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+..+..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 555555 566666666666655543 45555555566655 666666666666666543 4445555555
Q ss_pred HHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 011137 321 VLCK----KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH----TGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392 (493)
Q Consensus 321 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 392 (493)
.|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|+..+++..+.+ +...+..+...|
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~ 228 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 228 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 5555 666666666666666553 34555556666666 666777777776666653 255566666666
Q ss_pred Hh----cCCHHHHHHHHHHHhcC
Q 011137 393 CD----AGEIERGLELFEKMGSG 411 (493)
Q Consensus 393 ~~----~g~~~~a~~~~~~~~~~ 411 (493)
.. .+++++|.+.|++..+.
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HcCCCcccCHHHHHHHHHHHHHc
Confidence 66 66777777777666664
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.66 E-value=4e-14 Score=131.46 Aligned_cols=250 Identities=10% Similarity=0.076 Sum_probs=206.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 011137 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK-VEKAYNLFKVFRGKFKADVISYNVIANG 216 (493)
Q Consensus 138 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 216 (493)
..+|..+...+...|++++|++.++++++.. +.+..+|+.+..++...|+ +++|+..|++.....+.+..+|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4567778888889999999999999999865 5578889999999999996 9999999999888778888999999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCHHH
Q 011137 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV-VGEIKR 295 (493)
Q Consensus 217 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~ 295 (493)
+...|++++|+..|+++++.... +...|..+..++.+.|++++|+..++++++.... +...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999999987655 7889999999999999999999999999998654 78899999999988 666577
Q ss_pred H-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-------
Q 011137 296 A-----RNVFDGMVNGGVLPSVATYNAMIQVLCKKD--SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG------- 361 (493)
Q Consensus 296 A-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~------- 361 (493)
| ++.|++.+.... -+...|..+..++...| ++++|.+.+.++ +. ...+...+..+..+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccch
Confidence 7 588888887533 36778888888898888 689999999888 33 2346678888888888864
Q ss_pred --CHHHHHHHHHHh-hhCCCCCCHHHHHHHHHHHHh
Q 011137 362 --EMERALEFVGRM-KDDECEPNVQTYNILIRYFCD 394 (493)
Q Consensus 362 --~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~ 394 (493)
..++|+++++++ .+.. +.....|..+...+..
T Consensus 331 ~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHH
Confidence 258999999999 6553 4456677777776654
No 48
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.66 E-value=1.7e-14 Score=138.09 Aligned_cols=352 Identities=12% Similarity=0.052 Sum_probs=236.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011137 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKA---DRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184 (493)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 184 (493)
.+...+.+.|++++|.++|++..+.| +...+..+...|...|+. ++|++.|++..+. +...+..+..++.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35677788999999999999998776 344555566667778888 8999999998864 5566677777555
Q ss_pred ccC-----CHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011137 185 KEK-----KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTN---KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256 (493)
Q Consensus 185 ~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 256 (493)
..+ +.++|...|++..... +...+..|...|...+..+ ++.+.+......| +...+..+...|...+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 555 7889999998876543 4457888888888766544 4555555555544 3456677888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHH
Q 011137 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG---EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK----DSVE 329 (493)
Q Consensus 257 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~ 329 (493)
.++++......+.+.-...++..+..|...|...| +.++|++.|++..+.|. ++...+..+...|... ++.+
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHH
Confidence 55544444333322212224448888999999999 99999999999999865 3566556777777665 7999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC-----CHHHH
Q 011137 330 NAILVFEEMVGKGYMPNSTTYNVVIRG-L--CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG-----EIERG 401 (493)
Q Consensus 330 ~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a 401 (493)
+|...|+... .| +...+..+... + ...+++++|+.+|++..+.| +...+..|...|. .| ++++|
T Consensus 235 ~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 9999999988 33 55566666666 3 46899999999999999876 6778888888887 55 99999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHhcc-CCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 011137 402 LELFEKMGSGVCLPNLDTYNILISSMFVR-KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL----IGNQGLAKE 476 (493)
Q Consensus 402 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~-~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~ 476 (493)
.+.|++.. . -+...+..|...|... |-..+..+|.++|++..+.|. ++ ....|...|.. ..+.++|..
T Consensus 307 ~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 307 EAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-NS--ADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-TT--HHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-HH--HHHHHHHHHHhCCCCCCCHHHHHH
Confidence 99999988 4 3677788888777652 212233349999999998773 33 34445555543 458999999
Q ss_pred HHHHHHhcCCC
Q 011137 477 ILRLQSRCGRL 487 (493)
Q Consensus 477 ~~~~~~~~g~~ 487 (493)
+++...+.|..
T Consensus 380 ~~~~A~~~g~~ 390 (452)
T 3e4b_A 380 FSQLAKAQDTP 390 (452)
T ss_dssp HHHHHHTTCCH
T ss_pred HHHHHHHCCCH
Confidence 99999888764
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.66 E-value=6.7e-15 Score=131.37 Aligned_cols=221 Identities=11% Similarity=-0.044 Sum_probs=128.1
Q ss_pred cCChHHHHHHHHHHhhCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 011137 116 LRDYRTVWTLVHRMKSLSLG---PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192 (493)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A 192 (493)
.|++++|...++++.+.... .+..++..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 46677777777777665321 134566667777777777777777777776653 34566677777777777777777
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011137 193 YNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272 (493)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 272 (493)
...|++.....+.+..++..+...+...|++++|.+.++++.+.. |+.......+..+...|++++|...+++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 777776665555566667777777777777777777777766542 333333333344455566666666665555542
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011137 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP---SVATYNAMIQVLCKKDSVENAILVFEEMVGK 341 (493)
Q Consensus 273 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 341 (493)
. ++...+. ++..+...++.++|.+.+++..+..... +..++..+...|...|++++|...++++.+.
T Consensus 175 ~-~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 175 D-KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp C-CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred C-cchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 2 2222232 4555555555666666665554321100 1234444555555555555555555555543
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=9.2e-14 Score=122.24 Aligned_cols=200 Identities=8% Similarity=-0.002 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011137 103 PSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182 (493)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 182 (493)
+..|..+...+...|++++|...++++..... .+..++..+...+...|++++|.+.++++.+.. +.+...+..+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 45677777888888889988888888877643 467788888888888888888888888887654 3466777777788
Q ss_pred HHccCCHHHHHHHHHHhhc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011137 183 LCKEKKVEKAYNLFKVFRG--KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260 (493)
Q Consensus 183 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 260 (493)
+...|++++|...++++.. ..+.+...+..+...+...|++++|.+.++++.+.... +...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888877766 44445566777777777777777777777777665432 45667777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 011137 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306 (493)
Q Consensus 261 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 306 (493)
|...++++.+... .+...+..+...+...|+.++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7777777766533 35666666777777777777777777776654
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=7.5e-14 Score=122.80 Aligned_cols=201 Identities=12% Similarity=0.050 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHH
Q 011137 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGW 217 (493)
Q Consensus 138 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (493)
...+..+...+...|++++|++.|+++.+.. +.+...+..+..++...|++++|.+.+++.....+.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 3456666677777777777777777776643 345666677777777777777777777766655555666666777777
Q ss_pred HhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 011137 218 CLVKRTNKALEVLKEMVDRGLNP-NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296 (493)
Q Consensus 218 ~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 296 (493)
...|++++|.++++++.+.+..| +...+..+...+...|++++|.+.++++.+... .+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777766522233 344556666666666777777777666665532 2455666666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011137 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341 (493)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 341 (493)
...++++.+... .+...+..+...+...|+.++|...++.+.+.
T Consensus 195 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666666655422 34555555666666666666666666666554
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.64 E-value=1.4e-13 Score=118.66 Aligned_cols=196 Identities=9% Similarity=-0.019 Sum_probs=75.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc
Q 011137 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV 220 (493)
Q Consensus 141 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 220 (493)
+..+...+...|++++|++.++.+.+.. +.+...+..+..++...|++++|...+++.....+.+..++..+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 89 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGR 89 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 3333333444444444444444333321 122333333344444444444444444433332233333344444444444
Q ss_pred -CChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 011137 221 -KRTNKALEVLKEMVDRGLNPN-LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298 (493)
Q Consensus 221 -~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 298 (493)
|++++|.+.++++.+.+..|+ ...+..+..++...|++++|...++++.+.... +...+..+...+...|++++|.+
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~ 168 (225)
T 2vq2_A 90 LNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLGDADY 168 (225)
T ss_dssp TCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHHHHHH
Confidence 444444444444433111111 233334444444444444444444444333211 23334444444444444444444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338 (493)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 338 (493)
.++++.+.....+...+..+...+...|+.++|..+++.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 169 YFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4444433211023333333333334444444444444443
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.64 E-value=1.2e-13 Score=118.92 Aligned_cols=204 Identities=13% Similarity=0.041 Sum_probs=178.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 179 (493)
+.++..|..+...+...|++++|...++++..... .+...+..+...+...|++++|.+.++++.+.. +.+..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 82 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 34677899999999999999999999999988653 568899999999999999999999999998764 4577889999
Q ss_pred HHHHHcc-CCHHHHHHHHHHhhc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011137 180 LDLLCKE-KKVEKAYNLFKVFRG--KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256 (493)
Q Consensus 180 l~~~~~~-g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 256 (493)
..++... |++++|...++++.. ..+.+...+..+...+...|++++|.+.++++.+.... +...+..+..++.+.|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcC
Confidence 9999999 999999999999887 34445678999999999999999999999999876543 5788999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 011137 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306 (493)
Q Consensus 257 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 306 (493)
++++|...++++.+.....+...+..+...+...|+.+.|..+++.+.+.
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999999988754247788888889999999999999999998764
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.64 E-value=1.9e-14 Score=125.87 Aligned_cols=201 Identities=10% Similarity=0.080 Sum_probs=132.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 181 (493)
.+..|..+...+...|++++|...++++.+... .+..++..+...+...|++++|+..++++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 556677777778888888888888888877543 467777888888888888888888888877653 346677777777
Q ss_pred HHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011137 182 LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261 (493)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 261 (493)
++...|++++|...++++....+.+...+..+...+...|++++|.+.++++.+.... +...+..+...+.+.|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888887776666666777777777777788888888877777665332 566677777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 011137 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306 (493)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 306 (493)
.+.++++.+... .+..++..+..+|...|++++|.+.++++.+.
T Consensus 179 ~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 777777766532 25666677777777777777777777776664
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=4e-15 Score=132.84 Aligned_cols=59 Identities=12% Similarity=-0.102 Sum_probs=22.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 011137 176 FNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234 (493)
Q Consensus 176 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 234 (493)
+..+..++...|++++|...|++.....+.+..+|..+...+...|++++|.+.|+++.
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 104 (275)
T 1xnf_A 46 LYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL 104 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 33333333333444444433333333323333333333333333333333333333333
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.63 E-value=2.8e-14 Score=124.69 Aligned_cols=121 Identities=17% Similarity=0.058 Sum_probs=40.9
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011137 181 DLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260 (493)
Q Consensus 181 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 260 (493)
..+...|++++|...|++.....+.+...+..+...+...|++++|++.++++.+.... +...+..+...+...|++++
T Consensus 31 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 109 (243)
T 2q7f_A 31 GRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVYVVKEMYKE 109 (243)
T ss_dssp -----------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHhccHHH
Confidence 33333333443333333333333333333333333333444444444444433332211 23333333333444444444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 011137 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303 (493)
Q Consensus 261 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 303 (493)
|.+.++++.+... .+...+..+...+...|++++|...++++
T Consensus 110 A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 151 (243)
T 2q7f_A 110 AKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRA 151 (243)
T ss_dssp HHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4444443333321 12333333333333444444444444333
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.59 E-value=4.5e-14 Score=133.61 Aligned_cols=304 Identities=9% Similarity=-0.016 Sum_probs=164.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CC
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPT----QKTFAIIAERYVSAGKADRAVKIFLSMHEH----GCR-QS 172 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~ 172 (493)
....+......+...|++++|...|++....+. .+ ..++..+...+...|++++|...+++.... +.. ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 444555555666666666666666666655432 12 234555566666666666666666654421 100 11
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011137 173 LNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252 (493)
Q Consensus 173 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 252 (493)
..++..+...+...|++++|...+++.....+.... ......++..+...+
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------------------~~~~~~~~~~l~~~~ 137 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-----------------------------KVGEARALYNLGNVY 137 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-----------------------------ccchHHHHHHHHHHH
Confidence 234444455555555555555555443321000000 000122444444555
Q ss_pred HhcCC--------------------HHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 011137 253 FRAGQ--------------------IEEAWRFFLEMKKR----K-CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307 (493)
Q Consensus 253 ~~~g~--------------------~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 307 (493)
...|+ +++|.+.+++.... + ......++..+...|...|++++|.+.+++..+..
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 138 HAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 55555 55555555443321 1 01113345556666666666666666666654320
Q ss_pred C-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 011137 308 V-LPS----VATYNAMIQVLCKKDSVENAILVFEEMVGK----GYMP-NSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377 (493)
Q Consensus 308 ~-~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 377 (493)
. .++ ..++..+...|...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++..+..
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 0 011 225666677777777777777777766532 1110 13466677777888888888888887776531
Q ss_pred C-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcC----CCC-CCHHHHHHHHHHHhccCCccc
Q 011137 378 C-EPN----VQTYNILIRYFCDAGEIERGLELFEKMGSG----VCL-PNLDTYNILISSMFVRKKSDD 435 (493)
Q Consensus 378 ~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-p~~~~~~~li~~~~~~~~~~~ 435 (493)
. ..+ ..++..+...|...|++++|.+.+++..+. +.. ....++..+...+...|+...
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 0 111 456778888888889999988888876553 111 124556667777777666543
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.59 E-value=4.2e-14 Score=134.24 Aligned_cols=279 Identities=10% Similarity=0.003 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----C-CCCCH
Q 011137 103 PSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQ----KTFAIIAERYVSAGKADRAVKIFLSMHEH----G-CRQSL 173 (493)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~ 173 (493)
...+..+...+...|++++|...|++..+.+. .+. .++..+...|...|++++|+..+++..+. + .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 34455566677777888888888877776543 222 45666777777777777777777766542 1 01223
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhcC------CCCCcchHHHHHHHHHhcCC----------hhHHHHHHHHHHhCC
Q 011137 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGK------FKADVISYNVIANGWCLVKR----------TNKALEVLKEMVDRG 237 (493)
Q Consensus 174 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~m~~~g 237 (493)
.++..+...|...|++++|...+++.... .+....++..+...|...|+ .++|...
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~-------- 198 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA-------- 198 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH--------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH--------
Confidence 44555556666666666666665544321 01112234444444444444 0000000
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CC
Q 011137 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR----K-CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL-PS 311 (493)
Q Consensus 238 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 311 (493)
+++|.+.+++..+. + ......++..+...|...|++++|++.+++..+.... .+
T Consensus 199 --------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 199 --------------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred --------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 44444444443321 0 0112235555566666666666666666665432100 01
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC----C-
Q 011137 312 ----VATYNAMIQVLCKKDSVENAILVFEEMVGKGYM-----PNSTTYNVVIRGLCHTGEMERALEFVGRMKDD----E- 377 (493)
Q Consensus 312 ----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~- 377 (493)
..++..+...|...|++++|...+++..+.... ....++..+...+...|++++|...+++.... +
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 125566666777777777777777665543100 11345666777777778888888777776543 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 378 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
......++..+...|...|++++|.+.+++..+
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 011134667777888888888888888887766
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.59 E-value=2.5e-14 Score=135.37 Aligned_cols=289 Identities=10% Similarity=0.041 Sum_probs=175.0
Q ss_pred HHhhChHHHHHHHHHhhcCCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHH
Q 011137 78 RLWNHALKALHFFNILSYHPTYAHS----PSSFDHAIDLAARLRDYRTVWTLVHRMKSL----SLGP-TQKTFAIIAERY 148 (493)
Q Consensus 78 ~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~ 148 (493)
....+.+.|+.+|+.+.... +.+ ..+|..+...+...|++++|...+++.... +..+ ...++..+...+
T Consensus 20 ~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 97 (406)
T 3sf4_A 20 CKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 97 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 34567899999999886543 223 357888999999999999999999987543 2111 245788889999
Q ss_pred HHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCC--------------------HHHHHHHHHHhhcCC
Q 011137 149 VSAGKADRAVKIFLSMHEHGC-RQS----LNSFNTILDLLCKEKK--------------------VEKAYNLFKVFRGKF 203 (493)
Q Consensus 149 ~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~g~--------------------~~~A~~~~~~~~~~~ 203 (493)
...|++++|+..+++..+... ..+ ..++..+...+...|+ +++|...+++....
T Consensus 98 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~- 176 (406)
T 3sf4_A 98 KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSL- 176 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH-
Confidence 999999999999998875311 011 3356666666776776 55555555443211
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCH
Q 011137 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP-NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC-----EIDV 277 (493)
Q Consensus 204 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~ 277 (493)
+. ..+..+ ...++..+...+...|++++|...+++..+... ....
T Consensus 177 --------------------------~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 227 (406)
T 3sf4_A 177 --------------------------VT---ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAER 227 (406)
T ss_dssp --------------------------HH---HTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------------------------HH---hccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 00 001000 123445555555555666666655555443210 0012
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----h
Q 011137 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL-PS----VATYNAMIQVLCKKDSVENAILVFEEMVGKGYM-PN----S 347 (493)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~ 347 (493)
.++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|...+++..+.... .+ .
T Consensus 228 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 307 (406)
T 3sf4_A 228 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEG 307 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 25556666666666666666666665432100 01 345666777777777777777777766543100 11 4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhC----CC-CCCHHHHHHHHHHHHhcCCH
Q 011137 348 TTYNVVIRGLCHTGEMERALEFVGRMKDD----EC-EPNVQTYNILIRYFCDAGEI 398 (493)
Q Consensus 348 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~ 398 (493)
.++..+...|...|++++|...+++..+. +. .....++..+...+...|+.
T Consensus 308 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 308 RACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 46667777888888888888888876543 11 11234555666666666654
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.58 E-value=4.2e-14 Score=134.21 Aligned_cols=265 Identities=11% Similarity=0.061 Sum_probs=161.0
Q ss_pred HhhChHHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHhhC----C-CCCCHHHHHHHHHHHH
Q 011137 79 LWNHALKALHFFNILSYHPTYAHSP----SSFDHAIDLAARLRDYRTVWTLVHRMKSL----S-LGPTQKTFAIIAERYV 149 (493)
Q Consensus 79 ~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~ 149 (493)
...+.+.|+..|+.+.... +.+. ..|..+...+...|++++|...+++.... + ......++..+...|.
T Consensus 60 ~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 137 (411)
T 4a1s_A 60 NAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLK 137 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence 3467899999999886643 2343 57889999999999999999999997653 1 1123467888999999
Q ss_pred HcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHccCC-----------------HHHHHHHHHHhhcCC----
Q 011137 150 SAGKADRAVKIFLSMHEH----G-CRQSLNSFNTILDLLCKEKK-----------------VEKAYNLFKVFRGKF---- 203 (493)
Q Consensus 150 ~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~ll~~~~~~g~-----------------~~~A~~~~~~~~~~~---- 203 (493)
..|++++|+..+++..+. + .+....++..+..+|...|+ +++|...+++.....
T Consensus 138 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~ 217 (411)
T 4a1s_A 138 VMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG 217 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999988753 1 12234577888888999999 777777766543210
Q ss_pred --CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011137 204 --KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN-PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280 (493)
Q Consensus 204 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 280 (493)
+....++..+...+...|++++|++.+++..+.... .+. .....++
T Consensus 218 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~ 266 (411)
T 4a1s_A 218 DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR-------------------------------AAERRAN 266 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc-------------------------------HHHHHHH
Confidence 011124444445555555555555555444322100 000 0001244
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----C-CCChhhH
Q 011137 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVL-----PSVATYNAMIQVLCKKDSVENAILVFEEMVGKG----Y-MPNSTTY 350 (493)
Q Consensus 281 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~ 350 (493)
..+...|...|++++|.+.|++..+.... ....++..+...|...|++++|...+++..+.. . .....++
T Consensus 267 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 346 (411)
T 4a1s_A 267 SNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARAC 346 (411)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHH
Confidence 45555555555555555555554432100 013445556666666666666666666554421 0 0112356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhC
Q 011137 351 NVVIRGLCHTGEMERALEFVGRMKDD 376 (493)
Q Consensus 351 ~~li~~~~~~~~~~~a~~~~~~~~~~ 376 (493)
..+...|...|++++|...+++..+.
T Consensus 347 ~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 347 WSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 66677777777777777777776654
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.55 E-value=1.1e-13 Score=127.00 Aligned_cols=275 Identities=8% Similarity=0.017 Sum_probs=145.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCCHHH
Q 011137 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPT----QKTFAIIAERYVSAGKADRAVKIFLSMHEH----GC-RQSLNS 175 (493)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~ 175 (493)
.+......+...|++++|...++++.+... .+ ...+..+...+...|++++|++.+++.... +. +....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 344455666777777777777777766532 22 345666777777777777777777665432 11 112344
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhcCCC--CC----cchHHHHHHHHHhcCC--------------------hhHHHHH
Q 011137 176 FNTILDLLCKEKKVEKAYNLFKVFRGKFK--AD----VISYNVIANGWCLVKR--------------------TNKALEV 229 (493)
Q Consensus 176 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~ 229 (493)
+..+...+...|++++|...+++.....+ .+ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 55566666666666666666655432111 01 1245555555555555 5555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC--
Q 011137 230 LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK-CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG-- 306 (493)
Q Consensus 230 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-- 306 (493)
+++..... ...+ ......++..+...+...|++++|.+.+++..+.
T Consensus 166 ~~~a~~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 166 YEENLSLV-------------------------------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-------------------------------HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 54432210 0000 0011223444444455555555555555444321
Q ss_pred --CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC--
Q 011137 307 --GV-LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM-PN----STTYNVVIRGLCHTGEMERALEFVGRMKDD-- 376 (493)
Q Consensus 307 --~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-- 376 (493)
+. .....++..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...++++...
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 00 001224555555666666666666666554432100 01 345556666677777777777777666543
Q ss_pred --C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 011137 377 --E-CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411 (493)
Q Consensus 377 --~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 411 (493)
+ ......++..+...|.+.|++++|...+++..+.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1 0111345667777777788888888887777663
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.55 E-value=1.1e-13 Score=127.18 Aligned_cols=274 Identities=11% Similarity=0.069 Sum_probs=172.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHhhcC------CCCCcchH
Q 011137 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQS----LNSFNTILDLLCKEKKVEKAYNLFKVFRGK------FKADVISY 210 (493)
Q Consensus 141 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~ 210 (493)
+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|...+++.... .+....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3444556667777777777777776643 222 245556666666667777766666554321 01112334
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 011137 211 NVIANGWCLVKRTNKALEVLKEMVDRGL-NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289 (493)
Q Consensus 211 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 289 (493)
..+...+...|++++|.+.+++..+... ..+. .....++..+...|..
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGNVYHA 135 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc-------------------------------hHHHHHHHHHHHHHHH
Confidence 4444455555555555555444432100 0000 0012244445555555
Q ss_pred cCC--------------------HHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 011137 290 VGE--------------------IKRARNVFDGMVNG----GV-LPSVATYNAMIQVLCKKDSVENAILVFEEMVGK--- 341 (493)
Q Consensus 290 ~g~--------------------~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--- 341 (493)
.|+ +++|.+.+++.... +. .....++..+...+...|++++|...+++..+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 555 66666665554321 11 112447788889999999999999999887643
Q ss_pred -CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC--
Q 011137 342 -GY-MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC-EPN----VQTYNILIRYFCDAGEIERGLELFEKMGSGV-- 412 (493)
Q Consensus 342 -~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-- 412 (493)
+. ......+..+...+...|++++|...+++...... ..+ ..++..+...|...|++++|...+++..+..
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 11 11234788888899999999999999998875410 111 5678889999999999999999999886531
Q ss_pred --CC-CCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHC
Q 011137 413 --CL-PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449 (493)
Q Consensus 413 --~~-p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~ 449 (493)
.. ....++..+...+...|++++ |...+++..+.
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~a~~~ 332 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQ---AMHFAEKHLEI 332 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHH---HHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHH---HHHHHHHHHHH
Confidence 11 124578889999999999999 99999998875
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.53 E-value=1.1e-11 Score=112.50 Aligned_cols=219 Identities=11% Similarity=0.064 Sum_probs=108.3
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 011137 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVS-------AGKA-------DRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185 (493)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 185 (493)
++|..+|++..... +.+...|..++..+.. .|++ ++|..+|++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45555666655542 2355555555555442 3543 5566666665552112344455555555555
Q ss_pred cCCHHHHHHHHHHhhcCCCCCcc-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHH
Q 011137 186 EKKVEKAYNLFKVFRGKFKADVI-SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF-RAGQIEEAWR 263 (493)
Q Consensus 186 ~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~-~~g~~~~a~~ 263 (493)
.|++++|..+|++.....+.+.. .|..++..+.+.|++++|.++|++..+.... +...|...+.... ..|+.++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666555543333333 5555555555555566666666555544321 2233322222211 2455555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011137 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG-VLP--SVATYNAMIQVLCKKDSVENAILVFEEMVG 340 (493)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 340 (493)
+|+...+... .+...|..++..+.+.|++++|..+|++..... ..| ....|..++..+.+.|+.+.|..+++++.+
T Consensus 191 ~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 191 IFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555544422 244555555555555555555555555555531 222 233455555555555555555555555544
Q ss_pred C
Q 011137 341 K 341 (493)
Q Consensus 341 ~ 341 (493)
.
T Consensus 270 ~ 270 (308)
T 2ond_A 270 A 270 (308)
T ss_dssp H
T ss_pred H
Confidence 3
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.53 E-value=1.9e-12 Score=107.77 Aligned_cols=166 Identities=13% Similarity=0.141 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 011137 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG 216 (493)
Q Consensus 137 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 216 (493)
+..+|..+...|...|++++|++.|++..+.. +.+..++..+..+|.+.|++++|...++......+.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 44455555555555555555555555555443 33444555555555555555555555555544444444455555555
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 011137 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296 (493)
Q Consensus 217 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 296 (493)
+...++++.|.+.+.+....... +...+..+..++.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHH
Confidence 55555555555555555443322 3445555555555555555555555555554322 445555555555555555555
Q ss_pred HHHHHHHHH
Q 011137 297 RNVFDGMVN 305 (493)
Q Consensus 297 ~~~~~~~~~ 305 (493)
++.|++.++
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555554
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.52 E-value=1.4e-12 Score=122.45 Aligned_cols=294 Identities=11% Similarity=0.066 Sum_probs=152.8
Q ss_pred HHhcCChHHHHHHHHHHhhC--CCCCCHH--HHHHHHHH--HHHcCCHHHHH-----------HHHHHHHhCCCCCCHHH
Q 011137 113 AARLRDYRTVWTLVHRMKSL--SLGPTQK--TFAIIAER--YVSAGKADRAV-----------KIFLSMHEHGCRQSLNS 175 (493)
Q Consensus 113 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~--~~~~l~~~--~~~~g~~~~a~-----------~~~~~~~~~~~~~~~~~ 175 (493)
+.+.+++++|..+++++.+. ....+.. .|..++.. ....+.++.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 34577888888888887553 2223333 22333221 11223333333 4555443321 11111
Q ss_pred ------HHHHHHHHHccCCHHHHHHHHHHhhcC---CCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhCC--C---
Q 011137 176 ------FNTILDLLCKEKKVEKAYNLFKVFRGK---FKA---DVISYNVIANGWCLVKRTNKALEVLKEMVDRG--L--- 238 (493)
Q Consensus 176 ------~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g--~--- 238 (493)
+......+...|++++|...|++.... .+. ...++..+...|...|++++|+..+++..+.- .
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 112444566677777777777765442 111 22456667777777777777777777665321 0
Q ss_pred C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-----CC
Q 011137 239 N-PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC-----EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN-----GG 307 (493)
Q Consensus 239 ~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~ 307 (493)
. ....+++.+..+|...|++++|.+.+++..+... .....++..+...|...|++++|++.|++..+ ..
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 0 0124566666677777777777777666554311 00123556666666666777777666666654 21
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCC
Q 011137 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK----GYMPNSTTYNVVIRGLCHTGE---MERALEFVGRMKDDECEP 380 (493)
Q Consensus 308 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~ 380 (493)
.+....++..+...|.+.|++++|...+++..+. +-......+..+...+...|+ +++|+.++++... .+.
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~ 337 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YAD 337 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHH
Confidence 1223445666666666666666666666655432 111111223445555555555 5555555554411 111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 381 NVQTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 381 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
....+..+...|...|++++|...+++..+
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 233455566666666666666666665543
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.52 E-value=8.1e-12 Score=113.32 Aligned_cols=219 Identities=10% Similarity=0.021 Sum_probs=179.0
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh-------cCCh-------HHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 011137 84 LKALHFFNILSYHPTYAHSPSSFDHAIDLAAR-------LRDY-------RTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149 (493)
Q Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 149 (493)
..|+..|+.+.... |.++..|...+..+.. .|++ ++|..+|++....-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45777777765532 5688899998888764 5886 899999999998422356779999999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHH-hcCChhHHH
Q 011137 150 SAGKADRAVKIFLSMHEHGCRQSLN-SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWC-LVKRTNKAL 227 (493)
Q Consensus 150 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~ 227 (493)
..|++++|.++|+++.+.. +.+.. +|..++..+.+.|++++|..+|++..+..+.+...|...+.... ..|++++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999853 22344 89999999999999999999999988776666666655444432 379999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 011137 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK-CEI--DVVTYTTIVHGFGVVGEIKRARNVFDGMV 304 (493)
Q Consensus 228 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 304 (493)
++|++..+.... +...|..++..+.+.|++++|..+|++..... .+| ....|..++..+.+.|+.+.|..+++++.
T Consensus 190 ~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999876433 67889999999999999999999999999963 343 46789999999999999999999999998
Q ss_pred HC
Q 011137 305 NG 306 (493)
Q Consensus 305 ~~ 306 (493)
+.
T Consensus 269 ~~ 270 (308)
T 2ond_A 269 TA 270 (308)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.51 E-value=1.1e-12 Score=126.53 Aligned_cols=221 Identities=8% Similarity=-0.092 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 011137 154 ADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV-EKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232 (493)
Q Consensus 154 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 232 (493)
++++++.++...... +.+...+..+..++...|++ ++|+..|++..+..+.+..+|..+...|...|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455555555444322 23445555555555555555 5555555555444444445555555555555555555555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH
Q 011137 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312 (493)
Q Consensus 233 m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 312 (493)
..+.. |+...+..+...+...+.-. ...+.|++++|++.|++..+... .+.
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~--------------------------~~~~~g~~~~A~~~~~~al~~~p-~~~ 213 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDS--------------------------GDEHSRHVMDSVRQAKLAVQMDV-LDG 213 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSC--------------------------HHHHHHHHHHHHHHHHHHHHHCT-TCH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCC--------------------------hhhhhhhHHHHHHHHHHHHHhCC-CCH
Confidence 55432 33444444555554440000 00000444445554444444321 134
Q ss_pred HHHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH
Q 011137 313 ATYNAMIQVLCKK--------DSVENAILVFEEMVGKGYM--PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382 (493)
Q Consensus 313 ~~~~~li~~~~~~--------~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 382 (493)
..|..+..+|... |++++|...|++..+.... -+...|..+..+|...|++++|+..|+++.+.. +-+.
T Consensus 214 ~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~ 292 (474)
T 4abn_A 214 RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWP 292 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 4444444455444 5555555555555543210 144555555555555666666666666555542 2344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 011137 383 QTYNILIRYFCDAGEIERGLELF 405 (493)
Q Consensus 383 ~~~~~l~~~~~~~g~~~~a~~~~ 405 (493)
..+..+...+...|++++|.+.+
T Consensus 293 ~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 293 EPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555555556665555544
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.51 E-value=1.8e-12 Score=121.66 Aligned_cols=167 Identities=13% Similarity=0.006 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C----ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC----CC-CCCHH
Q 011137 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYM-P----NSTTYNVVIRGLCHTGEMERALEFVGRMKDD----EC-EPNVQ 383 (493)
Q Consensus 314 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~ 383 (493)
+++.+...|...|++++|...+++..+.... . ...++..+..+|...|++++|...+++..+. +. +....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 3444444444444554444444443322000 0 0124444555555555555555555555441 11 22344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCC-HHHH
Q 011137 384 TYNILIRYFCDAGEIERGLELFEKMGSG----VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR-KFTF 458 (493)
Q Consensus 384 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~ 458 (493)
++..+...|.+.|++++|...+++..+. +-+.....+..+...+...|+.+...+|+.++++. +..|+ ...+
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~ 342 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHH
Confidence 5555666666666666666666555432 00111222444555555555532222255555554 22333 3455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 459 NRVLNGLLLIGNQGLAKEILRLQSR 483 (493)
Q Consensus 459 ~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (493)
..+...|...|++++|.++++...+
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5566666777777777777665544
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.50 E-value=9.5e-13 Score=126.84 Aligned_cols=215 Identities=8% Similarity=-0.010 Sum_probs=134.8
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 011137 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKA-DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK 197 (493)
Q Consensus 119 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 197 (493)
++++...++...... +.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555554432 24566666666666666776 77777776666543 3345666666666666777777777666
Q ss_pred HhhcCCCCCcchHHHHHHHHHhc---------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CCHHH
Q 011137 198 VFRGKFKADVISYNVIANGWCLV---------KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA--------GQIEE 260 (493)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~--------g~~~~ 260 (493)
+..... |+...+..+...+... |++++|++.|++..+.... +...|..+..+|... |++++
T Consensus 162 ~al~~~-p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTHC-KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTTC-CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhhC-CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 665543 3356666666666666 6777777777776655433 456666666666666 66777
Q ss_pred HHHHHHHHHHCCCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 261 AWRFFLEMKKRKCE--IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338 (493)
Q Consensus 261 a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 338 (493)
|++.|++..+.... .+...|..+..+|...|++++|++.|++..+... .+...+..+..++...|++++|...+..+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77777776665320 3566677777777777777777777777666422 24556666666677777777766655433
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.50 E-value=5.4e-12 Score=105.00 Aligned_cols=168 Identities=11% Similarity=0.111 Sum_probs=151.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011137 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180 (493)
Q Consensus 101 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 180 (493)
.++..|..+...+.+.|++++|...|++..+..+ -+..++..+..+|...|++++|+..+....... +.+...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 3678999999999999999999999999988754 578899999999999999999999999998764 45677888888
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011137 181 DLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260 (493)
Q Consensus 181 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 260 (493)
..+...++++.|...+++.....+.+...+..+...+.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 99999999999999999988777778899999999999999999999999999987544 77889999999999999999
Q ss_pred HHHHHHHHHHC
Q 011137 261 AWRFFLEMKKR 271 (493)
Q Consensus 261 a~~~~~~~~~~ 271 (493)
|++.|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999999886
No 71
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.49 E-value=3e-10 Score=112.59 Aligned_cols=218 Identities=7% Similarity=-0.016 Sum_probs=128.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011137 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR-NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339 (493)
Q Consensus 261 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 339 (493)
+..+|++.... .+.....|...+..+...|+.++|. ++|++.... ++.+...|...+...-+.|+++.|..+|+.+.
T Consensus 328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44556655554 3335666666666666667766775 777777653 33355556666666667777777777777666
Q ss_pred hCC---------CCCC------------hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc-CC
Q 011137 340 GKG---------YMPN------------STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA-GE 397 (493)
Q Consensus 340 ~~~---------~~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~ 397 (493)
+.. ..|+ ...|...+....+.|+.+.|..+|.++.+.........|...+..-.+. ++
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence 531 0121 2245555666666677777777777776641112233333333333333 34
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHH
Q 011137 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP--RKFTFNRVLNGLLLIGNQGLAK 475 (493)
Q Consensus 398 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~a~ 475 (493)
.+.|.++|+...+. ++-+...|...+......|+.+. |..+|++.+.....+ ....|...+.--.+.|+.+.+.
T Consensus 486 ~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~---AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 486 TKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQ---VKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp CHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHH---HHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred HHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 67777777777664 33455566666666666666666 777777777653211 2445666666666677777777
Q ss_pred HHHHHHHhc
Q 011137 476 EILRLQSRC 484 (493)
Q Consensus 476 ~~~~~~~~~ 484 (493)
++.+++.+.
T Consensus 562 ~v~~R~~~~ 570 (679)
T 4e6h_A 562 TLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777666654
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.48 E-value=3.1e-13 Score=122.75 Aligned_cols=244 Identities=13% Similarity=0.063 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcC--------
Q 011137 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEH-------GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-------- 202 (493)
Q Consensus 138 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-------- 202 (493)
..++..+...+...|++++|+..++++.+. ..+....++..+..+|...|++++|...+++....
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456666777777777777777777776642 12223445566666666666666666666554321
Q ss_pred CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011137 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282 (493)
Q Consensus 203 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 282 (493)
.+....++..+...+...|++++|.+.++++.+.... ......+.....+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~----------------------------~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK----------------------------VLGKDHPDVAKQLNN 158 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH----------------------------HHCTTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH----------------------------hcCCCChHHHHHHHH
Confidence 1112234445555555555555555555554432000 000000112233444
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCChh
Q 011137 283 IVHGFGVVGEIKRARNVFDGMVNG------GVLP-SVATYNAMIQVLCKKDSVENAILVFEEMVGK-------GYMPNST 348 (493)
Q Consensus 283 li~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~ 348 (493)
+...+...|++++|+++|+++.+. +..| ...++..+...|...|++++|...++++.+. ...+...
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 444444445555554444444332 0011 1224444555555555555555555554431 0111111
Q ss_pred -------hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 349 -------TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 349 -------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
.+..+...+...+.+.++...+....... +....++..+...|.+.|++++|.+.|++..+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11112222233344444555555554432 33455677777777777777777777776654
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.47 E-value=6.1e-13 Score=120.79 Aligned_cols=247 Identities=13% Similarity=0.058 Sum_probs=123.4
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C
Q 011137 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDR-------GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR------K 272 (493)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-------g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~ 272 (493)
+..++..+...+...|++++|..+++++.+. .......++..+...+...|++++|...++++... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3445666666677777777777777666542 11223345556666666666666666666655443 1
Q ss_pred -CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 011137 273 -CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351 (493)
Q Consensus 273 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 351 (493)
.+....++..+...|...|++++|.+.|+++.+.. ..............+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------------------------~~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR----------------------------EKVLGKDHPDVAKQLN 157 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH----------------------------HHHHCTTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH----------------------------HHhcCCCChHHHHHHH
Confidence 11123444555555555555555555555544320 0000000011223344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC-------CCCC--
Q 011137 352 VVIRGLCHTGEMERALEFVGRMKDD------E-CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG-------VCLP-- 415 (493)
Q Consensus 352 ~li~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~p-- 415 (493)
.+...+...|++++|+.+++++.+. + .+....++..+...|...|++++|.+.++++.+. ...+
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 4555555555555555555555442 1 1112345556666666666666666666666542 0011
Q ss_pred -----CHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011137 416 -----NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484 (493)
Q Consensus 416 -----~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 484 (493)
....+..+...+...+.+.+ +...+.+..... ..+..++..+..+|...|++++|.++++...+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~---a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGE---YGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCC---CC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHH---HHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 11223333344445566666 667777766531 233667888888999999999999999877653
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.45 E-value=5e-11 Score=111.33 Aligned_cols=264 Identities=11% Similarity=0.043 Sum_probs=144.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHhhcCCC--CC----cchHHHHHHH
Q 011137 147 RYVSAGKADRAVKIFLSMHEHGCRQSL----NSFNTILDLLCKEKKVEKAYNLFKVFRGKFK--AD----VISYNVIANG 216 (493)
Q Consensus 147 ~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~----~~~~~~l~~~ 216 (493)
.+...|++++|...+++........+. ..++.+...+...|++++|...+++.....+ .+ ..++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 344455555555555554443211111 1233444445555555555555544332100 01 1124455556
Q ss_pred HHhcCChhHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHH
Q 011137 217 WCLVKRTNKALEVLKEMVDR----GLN--P-NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE----IDVVTYTTIVH 285 (493)
Q Consensus 217 ~~~~~~~~~A~~~~~~m~~~----g~~--p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~li~ 285 (493)
+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... ....++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 66666666666666665431 111 2 2234555666677777777777777766553221 12345666667
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCC-HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHH
Q 011137 286 GFGVVGEIKRARNVFDGMVNGGVLPS-VATYN-----AMIQVLCKKDSVENAILVFEEMVGKGYMPN---STTYNVVIRG 356 (493)
Q Consensus 286 ~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~-----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~ 356 (493)
.+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++.......+. ...+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 77777777777777777654211111 11111 223346677888888888777665432111 2235566677
Q ss_pred HHhcCCHHHHHHHHHHhhhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 357 LCHTGEMERALEFVGRMKDD----ECEPNV-QTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 357 ~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
+...|++++|...++..... +..++. ..+..+..++...|+.++|...+++...
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77888888888888776543 211122 3566677778888888888888877765
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.44 E-value=1.3e-11 Score=115.57 Aligned_cols=232 Identities=8% Similarity=-0.038 Sum_probs=144.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC--C---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC--C---CC-CHHHHH
Q 011137 248 VLKGYFRAGQIEEAWRFFLEMKKRKC--E---IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG--V---LP-SVATYN 316 (493)
Q Consensus 248 l~~~~~~~g~~~~a~~~~~~~~~~~~--~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~---~~-~~~~~~ 316 (493)
....+...|++++|...+++..+... . ....++..+...|...|+++.|...+++..+.. . .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34445566777777777776655311 1 123456666667777777777777776655420 0 00 134566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHhhh-----CCCCCCHHHHH
Q 011137 317 AMIQVLCKKDSVENAILVFEEMVGK----GYM-PNSTTYNVVIRGLCHTGEMERALEFVGRMKD-----DECEPNVQTYN 386 (493)
Q Consensus 317 ~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 386 (493)
.+...|...|++++|...+++..+. +.. ....++..+..+|...|++++|...+++... .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 6777777777777777777766542 111 1124566677777888888888888887776 32 22366777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 011137 387 ILIRYFCDAGEIERGLELFEKMGSGV----CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR-KFTFNRV 461 (493)
Q Consensus 387 ~l~~~~~~~g~~~~a~~~~~~~~~~~----~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l 461 (493)
.+...|.+.|++++|...+++..+.. -+.....+..+...+...++.+...+|+..+++ .+..|+ ...+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHH
Confidence 88888888888888888888776531 111233455555566666663333336666665 222333 3455667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 011137 462 LNGLLLIGNQGLAKEILRLQSR 483 (493)
Q Consensus 462 ~~~~~~~g~~~~a~~~~~~~~~ 483 (493)
...|...|++++|.+.++...+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7788889999998888876654
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.43 E-value=4.4e-11 Score=111.91 Aligned_cols=226 Identities=11% Similarity=0.085 Sum_probs=107.8
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCC--C----CcchHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CC-CHHHHHHH
Q 011137 181 DLLCKEKKVEKAYNLFKVFRGKFK--A----DVISYNVIANGWCLVKRTNKALEVLKEMVDR----GL-NP-NLTTYNIV 248 (493)
Q Consensus 181 ~~~~~~g~~~~A~~~~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~-~p-~~~~~~~l 248 (493)
..+...|++++|...|++.....+ + ...++..+...|...|++++|...+++..+. +- .+ ...+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 344556666666666665543211 1 1234555666666666666666666655431 00 10 12345555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 011137 249 LKGYFRAGQIEEAWRFFLEMKKR----KCE-IDVVTYTTIVHGFGVVGEIKRARNVFDGMVN-----GGVLPSVATYNAM 318 (493)
Q Consensus 249 ~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l 318 (493)
..+|...|++++|.+.+++..+. +.. ....++..+..+|...|++++|++.|++..+ .... ...++..+
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~l 267 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGL 267 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHH
Confidence 66666666666666666555442 100 1123445555555666666666666655544 2211 24445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC----CCChhhHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 011137 319 IQVLCKKDSVENAILVFEEMVGKGY----MPNSTTYNVVIRGLCHTGE---MERALEFVGRMKDDECEPNVQTYNILIRY 391 (493)
Q Consensus 319 i~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 391 (493)
...|.+.|++++|...+++..+... ......+..+...+...++ +.+|+..++.... .+.....+..+...
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la~~ 345 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL--HAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC--hhHHHHHHHHHHHH
Confidence 5555566666666665555543211 1111223333333444444 4444444443211 01112334455555
Q ss_pred HHhcCCHHHHHHHHHHHh
Q 011137 392 FCDAGEIERGLELFEKMG 409 (493)
Q Consensus 392 ~~~~g~~~~a~~~~~~~~ 409 (493)
|...|++++|...|++..
T Consensus 346 y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 555555555555555543
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.42 E-value=1.1e-10 Score=108.94 Aligned_cols=271 Identities=10% Similarity=0.026 Sum_probs=188.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHH
Q 011137 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQK----TFAIIAERYVSAGKADRAVKIFLSMHEHGC-RQS----LNSF 176 (493)
Q Consensus 106 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~ 176 (493)
+......+...|++++|...+++........+.. ++..+...+...|++++|...+++...... ..+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444556677899999999999877654333332 456667778889999999999988764211 112 2335
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhcC----CC---C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--C--CHHH
Q 011137 177 NTILDLLCKEKKVEKAYNLFKVFRGK----FK---A-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN--P--NLTT 244 (493)
Q Consensus 177 ~~ll~~~~~~g~~~~A~~~~~~~~~~----~~---~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~--p--~~~~ 244 (493)
..+...+...|++++|...+++.... .. | ....+..+...+...|++++|...+++....... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 66777888899999999998876432 11 1 2345677888889999999999999988753221 1 2356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHhccCCHHHHHHHHHHHHHCCCCCC---HHHH
Q 011137 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID--VVTYT----TIVHGFGVVGEIKRARNVFDGMVNGGVLPS---VATY 315 (493)
Q Consensus 245 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~ 315 (493)
+..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......++ ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 77888889999999999999998865421111 11111 233457789999999999988765432211 2346
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 011137 316 NAMIQVLCKKDSVENAILVFEEMVGK----GYMPNS-TTYNVVIRGLCHTGEMERALEFVGRMKDD 376 (493)
Q Consensus 316 ~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 376 (493)
..+...+...|++++|...++..... |..++. ..+..+..++...|+.++|...+++....
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 67788889999999999999887543 222222 25666677888999999999999888753
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.40 E-value=3.4e-11 Score=99.97 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=9.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHH
Q 011137 209 SYNVIANGWCLVKRTNKALEVLKEM 233 (493)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~~~~m 233 (493)
.+..+...+...|++++|.+.++++
T Consensus 78 ~~~~~a~~~~~~~~~~~A~~~~~~~ 102 (186)
T 3as5_A 78 VATVLGLTYVQVQKYDLAVPLLIKV 102 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3333333333333333333333333
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.38 E-value=5.1e-11 Score=98.85 Aligned_cols=166 Identities=13% Similarity=0.071 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011137 103 PSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182 (493)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 182 (493)
...|..+...+...|++++|...++++..... .+..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 45677888889999999999999999887643 578889999999999999999999999998764 4577888899999
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011137 183 LCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262 (493)
Q Consensus 183 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 262 (493)
+...|++++|.+.+++.....+.+...+..+...+...|++++|.+.++++.+.... +...+..+...+...|++++|.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999988777777888888899999999999999999988876433 5677888888888888888888
Q ss_pred HHHHHHHHC
Q 011137 263 RFFLEMKKR 271 (493)
Q Consensus 263 ~~~~~~~~~ 271 (493)
+.++++.+.
T Consensus 165 ~~~~~~~~~ 173 (186)
T 3as5_A 165 PHFKKANEL 173 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 888887664
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.37 E-value=2.2e-11 Score=122.08 Aligned_cols=164 Identities=14% Similarity=0.104 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHH
Q 011137 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGW 217 (493)
Q Consensus 138 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (493)
..+++.+...|.+.|++++|++.|++..+.. +.+...|+.+..+|.+.|++++|+..|++..+..+.+..+|+.+..++
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455555555555555555555555555442 234455555555555555555555555555444444455555555555
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 011137 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297 (493)
Q Consensus 218 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 297 (493)
.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++|++.|++..+.... +...+..+..+|...|++++|.
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHHH
Confidence 5555555555555555544322 3445555555555555555555555555544322 3445555555555555555555
Q ss_pred HHHHHHH
Q 011137 298 NVFDGMV 304 (493)
Q Consensus 298 ~~~~~~~ 304 (493)
+.++++.
T Consensus 166 ~~~~kal 172 (723)
T 4gyw_A 166 ERMKKLV 172 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 81
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.36 E-value=6.1e-09 Score=103.26 Aligned_cols=392 Identities=10% Similarity=0.037 Sum_probs=265.7
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHH
Q 011137 85 KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGK---ADRAVKIF 161 (493)
Q Consensus 85 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~ 161 (493)
..-.+-+.+...| .|..+|..++..+.+.++++.+..+|+.+... .+.+...|...+..-.+.|+ ++.+.++|
T Consensus 51 ~i~~lE~~l~~np---~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 51 VIGKLNDMIEEQP---TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp HHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHCc---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 3334555556654 59999999999999999999999999999987 45788899999999888898 99999999
Q ss_pred HHHHhCC-CCCCHHHHHHHHHHHHccCCH--------HHHHHHHHHhhcC--C--CCCcchHHHHHHHHH---------h
Q 011137 162 LSMHEHG-CRQSLNSFNTILDLLCKEKKV--------EKAYNLFKVFRGK--F--KADVISYNVIANGWC---------L 219 (493)
Q Consensus 162 ~~~~~~~-~~~~~~~~~~ll~~~~~~g~~--------~~A~~~~~~~~~~--~--~~~~~~~~~l~~~~~---------~ 219 (493)
++..... .+|++..|...+....+.++. +...++|+..... . +.+...|...+.... .
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9998753 138888998888766665543 3344677765432 2 224467887776544 2
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-------------CHHHHHHHHHHHHHC--CC----C------
Q 011137 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG-------------QIEEAWRFFLEMKKR--KC----E------ 274 (493)
Q Consensus 220 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-------------~~~~a~~~~~~~~~~--~~----~------ 274 (493)
.++++.+.++|++++......-..+|......-...+ +++.|...+.++... ++ +
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA 286 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence 3457888999999985322212234433222221111 123344444443221 11 1
Q ss_pred -----C-----C---HHHHHHHHHHHhccC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-H
Q 011137 275 -----I-----D---VVTYTTIVHGFGVVG-------EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI-L 333 (493)
Q Consensus 275 -----~-----~---~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~-~ 333 (493)
| + ...|...+..--..+ ..+.+..+|++.+.. ++.....|...+..+...|+.++|. .
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 0 0 134555554433322 134566788888775 3447788888888888899999997 9
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC---------CCC------------CHHHHHHHHHHH
Q 011137 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE---------CEP------------NVQTYNILIRYF 392 (493)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------~~~------------~~~~~~~l~~~~ 392 (493)
+|+..... ++.+...|...+....+.|+++.|.++|+.+.... -.| ...+|...+...
T Consensus 366 il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 366 YLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence 99999875 33455567778888889999999999999988631 013 234688888888
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcc-CCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 011137 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR-KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471 (493)
Q Consensus 393 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~-~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 471 (493)
.+.|+.+.|..+|.++.+.-.......|...+..-.+. ++.+. |.++|+..++. +.-+...+...+.-....|+.
T Consensus 445 rR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~---Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~ 520 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKT---ACKVLELGLKY-FATDGEYINKYLDFLIYVNEE 520 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHH---HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCH
T ss_pred HHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHH---HHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCH
Confidence 88999999999999998751111233443333222233 44677 99999999986 344566777888888889999
Q ss_pred HHHHHHHHHHHhcCC
Q 011137 472 GLAKEILRLQSRCGR 486 (493)
Q Consensus 472 ~~a~~~~~~~~~~g~ 486 (493)
+.|+.+|+...+...
T Consensus 521 ~~AR~lferal~~~~ 535 (679)
T 4e6h_A 521 SQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999998887643
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.36 E-value=2.1e-11 Score=122.18 Aligned_cols=169 Identities=8% Similarity=-0.021 Sum_probs=152.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 179 (493)
|.++.+|+.+..++.+.|++++|...|++..+... -+..++..+...|.+.|++++|++.|++..+.. +.+...|+.+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 44678999999999999999999999999988753 468899999999999999999999999999865 4568899999
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 011137 180 LDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259 (493)
Q Consensus 180 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 259 (493)
..+|.+.|++++|++.|++..+..+.+..+|+.+...|.+.|++++|++.|++..+.... +...+..+..++...|+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence 999999999999999999988777778899999999999999999999999999987544 6788999999999999999
Q ss_pred HHHHHHHHHHHC
Q 011137 260 EAWRFFLEMKKR 271 (493)
Q Consensus 260 ~a~~~~~~~~~~ 271 (493)
+|.+.++++.+.
T Consensus 163 ~A~~~~~kal~l 174 (723)
T 4gyw_A 163 DYDERMKKLVSI 174 (723)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999888764
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.33 E-value=2.9e-10 Score=98.05 Aligned_cols=206 Identities=11% Similarity=0.011 Sum_probs=159.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011137 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180 (493)
Q Consensus 101 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 180 (493)
.++..|......+.+.|++++|...|++.......++...+..+..++...|++++|++.|++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46788999999999999999999999999887655778888889999999999999999999999864 44667888999
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCc-------chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHH
Q 011137 181 DLLCKEKKVEKAYNLFKVFRGKFKADV-------ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN---LTTYNIVLK 250 (493)
Q Consensus 181 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~ 250 (493)
.++...|++++|...|++.....+.+. ..|..+...+...|++++|++.|++..+. .|+ ...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 999999999999999999887666666 56888889999999999999999999875 444 456777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011137 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318 (493)
Q Consensus 251 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 318 (493)
++...| ...++++...+.. +...|.... ....+.+++|+..|++..+... -+..+...+
T Consensus 162 ~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p-~~~~~~~~l 220 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLSP-NRTEIKQMQ 220 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHH
Confidence 776544 3445555554322 344444333 3345678999999999988532 234444433
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.31 E-value=3.3e-10 Score=97.72 Aligned_cols=197 Identities=13% Similarity=0.020 Sum_probs=155.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 011137 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIAN 215 (493)
Q Consensus 136 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 215 (493)
.++..+......+...|++++|+..|++..+...+++...+..+..++...|++++|+..|++.....+.+..+|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 46788888999999999999999999999987633677788789999999999999999999988877778889999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 011137 216 GWCLVKRTNKALEVLKEMVDRGLNPNL-------TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI--DVVTYTTIVHG 286 (493)
Q Consensus 216 ~~~~~~~~~~A~~~~~~m~~~g~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~ 286 (493)
.+...|++++|++.+++..+.... +. ..|..+...+...|++++|++.+++..+.. +. +...+..+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHHH
Confidence 999999999999999999876443 44 457888889999999999999999998863 22 35677777777
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011137 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342 (493)
Q Consensus 287 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 342 (493)
|...| ...++++...+. .+...|.... ....+.+++|...+++..+..
T Consensus 163 ~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 75544 344555544322 2344444333 334567899999999998863
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.28 E-value=3.5e-11 Score=107.39 Aligned_cols=202 Identities=12% Similarity=0.047 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcC--------
Q 011137 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEH------G-CRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-------- 202 (493)
Q Consensus 138 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-------- 202 (493)
..++..+...|...|++++|+..++++.+. + .+....++..+..+|...|++++|...|++....
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 344555555555556666665555555432 1 1122334555555666666666666665544322
Q ss_pred CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 011137 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDR------GLNP-NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR---- 271 (493)
Q Consensus 203 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 271 (493)
.+....++..+...+...|++++|.+.++++.+. +..| ...++..+..++...|++++|...++++.+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1222345666666666666666666666666543 1112 2345666666677777777777777666543
Q ss_pred ---CCCC-CHHHHHHHHHHHhccCC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011137 272 ---KCEI-DVVTYTTIVHGFGVVGE------IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340 (493)
Q Consensus 272 ---~~~~-~~~~~~~li~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 340 (493)
...+ ....+..+...+...+. +..+...++..... .+....++..+...|...|++++|..++++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0111 12222222222222221 22222222221111 111234566777777778888888887777654
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.26 E-value=3.4e-10 Score=101.66 Aligned_cols=69 Identities=23% Similarity=0.133 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 011137 188 KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR----GLNPN-LTTYNIVLKGYFRAGQIEEAW 262 (493)
Q Consensus 188 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~ 262 (493)
++++|...|++. ...|...|++++|.+.|++..+. |-.++ ..+|+.+..+|.+.|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 366666665544 33455667777777776665432 21111 345666666666666666666
Q ss_pred HHHHHHHH
Q 011137 263 RFFLEMKK 270 (493)
Q Consensus 263 ~~~~~~~~ 270 (493)
..+++..+
T Consensus 98 ~~~~~Al~ 105 (292)
T 1qqe_A 98 DSLENAIQ 105 (292)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665544
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.25 E-value=8.2e-11 Score=104.91 Aligned_cols=225 Identities=13% Similarity=0.047 Sum_probs=155.9
Q ss_pred cCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcC--------CCCCcchHHHHHH
Q 011137 151 AGKADRAVKIFLSMHE-------HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK--------FKADVISYNVIAN 215 (493)
Q Consensus 151 ~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~ 215 (493)
.|++++|+..+++..+ ...+....++..+..++...|++++|...+++.... .+....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 4555555555555443 222334667888999999999999999999876532 2334567899999
Q ss_pred HHHhcCChhHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCCCHHHHH
Q 011137 216 GWCLVKRTNKALEVLKEMVDR------GLNP-NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR------K-CEIDVVTYT 281 (493)
Q Consensus 216 ~~~~~~~~~~A~~~~~~m~~~------g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~ 281 (493)
.|...|++++|.+.+++..+. ...| ...++..+...+...|++++|...++++.+. + .+....++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 999999999999999998754 1112 3567888999999999999999999998775 1 222456788
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHHhcCCHHHH------HHHHHHHHhCCCCCCh
Q 011137 282 TIVHGFGVVGEIKRARNVFDGMVNG-------GVLP-SVATYNAMIQVLCKKDSVENA------ILVFEEMVGKGYMPNS 347 (493)
Q Consensus 282 ~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~-~~~~~~~li~~~~~~~~~~~a------~~~~~~~~~~~~~~~~ 347 (493)
.+...|...|++++|.+.++++.+. ...+ ....|..+...+...+....+ ...++.... ......
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 252 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVN 252 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHH
Confidence 8999999999999999999998753 1112 223344444444333332222 222222111 112234
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 011137 348 TTYNVVIRGLCHTGEMERALEFVGRMKDD 376 (493)
Q Consensus 348 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 376 (493)
..+..+...|...|++++|..++++..+.
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57888999999999999999999998754
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.22 E-value=3.9e-09 Score=93.01 Aligned_cols=58 Identities=10% Similarity=0.083 Sum_probs=22.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 011137 247 IVLKGYFRAGQIEEAWRFFLEMKKRKC-EIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304 (493)
Q Consensus 247 ~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 304 (493)
.+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 105 ~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 105 LLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444444444444444444333321 1123333333444444444444444444443
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.18 E-value=1.4e-09 Score=95.84 Aligned_cols=212 Identities=9% Similarity=-0.010 Sum_probs=131.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPT---QKTFAIIAERYVSAGKADRAVKIFLSMHEHGC--RQSLN 174 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~ 174 (493)
+.++..+-.....+.+.|++++|...|+.+....+ .+ ..++..+..+|...|++++|+..|+.+.+... +....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 34667777778888888999999999998887643 23 67788888888889999999999988887521 12244
Q ss_pred HHHHHHHHHHc--------cCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 011137 175 SFNTILDLLCK--------EKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246 (493)
Q Consensus 175 ~~~~ll~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 246 (493)
.+..+..++.. .|++++|...|+++....|.+......+.... .+... -...+.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~--------------~~~~~----~~~~~~ 152 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIR--------------ELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHH--------------HHHHH----HHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHH--------------HHHHH----HHHHHH
Confidence 56677777777 88888888888887766555555443321111 00000 011234
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhcc----------CCHHHHHHHHHHHHHCCCCCC--H
Q 011137 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEI--DVVTYTTIVHGFGVV----------GEIKRARNVFDGMVNGGVLPS--V 312 (493)
Q Consensus 247 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~~~~~--~ 312 (493)
.+...|.+.|++++|+..|+++.+..... ....+..+..+|... |++++|...|+++.+...... .
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 55666667777777777777766653221 234555666666544 667777777777766422111 1
Q ss_pred HHHHHHHHHHHhcCCHHH
Q 011137 313 ATYNAMIQVLCKKDSVEN 330 (493)
Q Consensus 313 ~~~~~li~~~~~~~~~~~ 330 (493)
.+...+-..+.+.+++++
T Consensus 233 ~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 233 TAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 233444444444444443
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.18 E-value=3.4e-10 Score=101.64 Aligned_cols=132 Identities=8% Similarity=-0.058 Sum_probs=70.6
Q ss_pred hHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----
Q 011137 209 SYNVIANGWCLV-KRTNKALEVLKEMVDRGLNP-N----LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV----- 277 (493)
Q Consensus 209 ~~~~l~~~~~~~-~~~~~A~~~~~~m~~~g~~p-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----- 277 (493)
+++.+...|... |++++|+..|++..+..... + ..++..+...+.+.|++++|+..+++..+.......
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 455566666664 66666666666654321100 1 234666666667777777777777766665332211
Q ss_pred -HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CC---HHHHHHHHHHHH--hcCCHHHHHHHHHHHHh
Q 011137 278 -VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL-PS---VATYNAMIQVLC--KKDSVENAILVFEEMVG 340 (493)
Q Consensus 278 -~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~---~~~~~~li~~~~--~~~~~~~a~~~~~~~~~ 340 (493)
..|..+..++...|++++|+..|++..+.... ++ ...+..++.++. ..+++++|+..|+.+..
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 14555666666677777777777666542111 00 112333444443 34556666666655544
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.14 E-value=1.8e-08 Score=88.79 Aligned_cols=243 Identities=8% Similarity=0.054 Sum_probs=158.5
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 011137 111 DLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190 (493)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 190 (493)
+-..-.|++..++.-.. +............+.++|...|+++.. ..-.|....+..+.. |...+
T Consensus 21 kn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT---
T ss_pred HHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc---
Confidence 44455788888777333 222223345555667888888887642 112333334443333 33322
Q ss_pred HHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011137 191 KAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN-PNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269 (493)
Q Consensus 191 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 269 (493)
|+..|++.....+++..++..+..++...|++++|++++.+.+..|.. -+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667777766554556666778888999999999999999998776541 256778888999999999999999999997
Q ss_pred HCCCCC-----CHHHHHHHHHHH--hc--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011137 270 KRKCEI-----DVVTYTTIVHGF--GV--VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340 (493)
Q Consensus 270 ~~~~~~-----~~~~~~~li~~~--~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 340 (493)
+. .| +..+...|+.++ .. .+++.+|..+|+++.+. .|+..+-..++.++.+.|++++|...++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75 33 245555566553 22 33788888888888664 24433334444478888888888888886654
Q ss_pred CC---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 011137 341 KG---------YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376 (493)
Q Consensus 341 ~~---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 376 (493)
.- -+-++.++..+|......|+ +|.+++.++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 20 02255566555555555666 777888888776
No 92
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.14 E-value=6e-08 Score=86.34 Aligned_cols=216 Identities=8% Similarity=-0.016 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHhhcCCCCCcchHHHHHHHH----Hhc---CChhHH
Q 011137 156 RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK--KVEKAYNLFKVFRGKFKADVISYNVIANGW----CLV---KRTNKA 226 (493)
Q Consensus 156 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~~A 226 (493)
+|+++++.++... +.+..+|+.--.++...| +++++++.++.+....|.+..+|+.-...+ ... ++++++
T Consensus 51 ~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 51 RALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 4444444444432 223334444444444444 455555555444444444444444433333 222 444555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC------HHHHHH
Q 011137 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE--EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE------IKRARN 298 (493)
Q Consensus 227 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~~A~~ 298 (493)
+++++++.+...+ +..+|+.-.-++.+.|.++ ++++.++++.+..+. |...|+.-...+...+. ++++++
T Consensus 130 L~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~ 207 (306)
T 3dra_A 130 FDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELN 207 (306)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHH
Confidence 5555555544333 4444444444444444444 555555555544332 44444444433333333 455555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 011137 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN-AILVFEEMVGKG--YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375 (493)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 375 (493)
.+++++...+ -|...|+.+-..+.+.|+... +..+..++.+.+ -..+...+..+..++.+.|+.++|.++++.+.+
T Consensus 208 ~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 208 YVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 5555544422 244555555544444444222 223333333221 012334444444444444455555555554443
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.14 E-value=2e-09 Score=91.22 Aligned_cols=74 Identities=18% Similarity=0.201 Sum_probs=33.1
Q ss_pred HHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011137 179 ILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253 (493)
Q Consensus 179 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 253 (493)
+..+|.+.|++++|...|++.....|.+...|..+...+...|++++|+..|++..+..+. +..++..+..+|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~ 133 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 4444444444444444444444433444444444444444444444444444444443222 3334444444443
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.14 E-value=1.9e-09 Score=95.04 Aligned_cols=209 Identities=15% Similarity=0.136 Sum_probs=134.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCC---cch
Q 011137 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS---LNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKAD---VIS 209 (493)
Q Consensus 136 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~ 209 (493)
.+...+......+.+.|++++|+..|+.+.+.. +.+ ...+..+..++.+.|++++|...|+++....|.+ ..+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 355666677777777888888888888877643 223 5566777777777888888888877776543322 345
Q ss_pred HHHHHHHHHh--------cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011137 210 YNVIANGWCL--------VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281 (493)
Q Consensus 210 ~~~l~~~~~~--------~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 281 (493)
+..+..++.. .|++++|+..|+++.+.... +......+.. +..+... -...+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHHH
Confidence 6666777777 77777777777777664322 1111111111 1111100 011246
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCh--
Q 011137 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLP--SVATYNAMIQVLCKK----------DSVENAILVFEEMVGKGYMPNS-- 347 (493)
Q Consensus 282 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~-- 347 (493)
.+...|.+.|++++|+..|+++++..... ....+..+..+|... |++++|...++.+.+.. |+.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~ 230 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--PDSPL 230 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--TTCTH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--CCChH
Confidence 67889999999999999999998753221 245677788888766 89999999999998863 333
Q ss_pred --hhHHHHHHHHHhcCCHHHH
Q 011137 348 --TTYNVVIRGLCHTGEMERA 366 (493)
Q Consensus 348 --~~~~~li~~~~~~~~~~~a 366 (493)
.....+-..+...++++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 3444455555555555443
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.14 E-value=3.1e-09 Score=82.68 Aligned_cols=129 Identities=11% Similarity=0.169 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011137 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184 (493)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 184 (493)
.|..+...+...|++++|..+++++.+... .+...+..+...+...|++++|...++++...+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 345555556666666666666666554432 345555555555666666666666666555443 234445555555555
Q ss_pred ccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011137 185 KEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235 (493)
Q Consensus 185 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 235 (493)
..|++++|.+.++.+....+.+...+..+...+...|++++|.+.++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555555444344444555555555555555555555555543
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.13 E-value=3e-09 Score=82.71 Aligned_cols=127 Identities=12% Similarity=0.230 Sum_probs=58.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc
Q 011137 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV 220 (493)
Q Consensus 141 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 220 (493)
+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++....+.+...+..+...+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 3444455555555555555555554432 223444444445555555555555555544433333344444444444444
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011137 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269 (493)
Q Consensus 221 ~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 269 (493)
|++++|.+.++++.+.... +...+..+...+.+.|++++|.+.++++.
T Consensus 83 ~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4444444444444433211 23334444444444444444444444443
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.13 E-value=9.2e-10 Score=110.88 Aligned_cols=171 Identities=9% Similarity=-0.052 Sum_probs=79.3
Q ss_pred HhcCChHHHHHHHHHHh--------hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 011137 114 ARLRDYRTVWTLVHRMK--------SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185 (493)
Q Consensus 114 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 185 (493)
...|++++|.+.+++.. ... +.+...+..+...+...|++++|++.|+++.+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 34455555555555544 221 1233444445555555555555555555554432 2334444445555555
Q ss_pred cCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011137 186 EKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265 (493)
Q Consensus 186 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 265 (493)
.|++++|...|++..+..+.+...|..+..++.+.|++++ ++.|++..+.+.. +...|..+..++.+.|++++|++.|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555555444444444455555555555555555 5555555443322 3344444555555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhc
Q 011137 266 LEMKKRKCEIDVVTYTTIVHGFGV 289 (493)
Q Consensus 266 ~~~~~~~~~~~~~~~~~li~~~~~ 289 (493)
+++.+.+.. +...+..+..++..
T Consensus 558 ~~al~l~P~-~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 558 DEVPPTSRH-FTTARLTSAVTLLS 580 (681)
T ss_dssp HTSCTTSTT-HHHHHHHHHHHTC-
T ss_pred HhhcccCcc-cHHHHHHHHHHHHc
Confidence 544443211 23344444444433
No 98
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.10 E-value=6.9e-08 Score=85.94 Aligned_cols=220 Identities=10% Similarity=0.043 Sum_probs=153.8
Q ss_pred CCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hhc---CC
Q 011137 187 KKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVK--RTNKALEVLKEMVDRGLNPNLTTYNIVLKGY----FRA---GQ 257 (493)
Q Consensus 187 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~----~~~---g~ 257 (493)
...++|+.+++.+....|.+..+|+.-...+...| ++++++++++.+....++ +..+|+.-...+ .+. ++
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 34467888888877766667777888888888877 888888888888876555 555665554444 444 67
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------HH
Q 011137 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK--RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS------VE 329 (493)
Q Consensus 258 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~------~~ 329 (493)
+++++.+++.+.+.... +..+|+.-...+.+.|.++ ++++.++++++.+.. |..+|+.-...+.+.++ ++
T Consensus 126 ~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHH
Confidence 88888888888877544 7777777777777777777 888888888776543 66777766666666665 77
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH-HHHHHHHHhhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011137 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME-RALEFVGRMKDDE--CEPNVQTYNILIRYFCDAGEIERGLELFE 406 (493)
Q Consensus 330 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 406 (493)
++++.++.++...+. |...|+.+-..+.+.|+.. .+..+...+.+.+ -..+...+..++..|.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 777777777766443 6667777776676666633 3445555554432 13466777777777777788888888887
Q ss_pred HHhc
Q 011137 407 KMGS 410 (493)
Q Consensus 407 ~~~~ 410 (493)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7765
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.08 E-value=5.6e-09 Score=88.44 Aligned_cols=174 Identities=9% Similarity=0.050 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHh
Q 011137 103 PSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAI----------------IAERYVSAGKADRAVKIFLSMHE 166 (493)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~~ 166 (493)
+..+-.....+.+.|++++|...|++.....+ .+...|.. +..+|...|++++|+..|++..+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444555667788888888888888877542 24456666 88899999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCCHHH
Q 011137 167 HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKR--TNKALEVLKEMVDRGLNPNLTT 244 (493)
Q Consensus 167 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~m~~~g~~p~~~~ 244 (493)
.. +.+...+..+..++...|++++|...|++.....|.+..+|..+...|...|+ ...+...++.... ..|....
T Consensus 83 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a 159 (208)
T 3urz_A 83 KA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYA 159 (208)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHH
Confidence 65 55788899999999999999999999999888777788899999888876654 3445555555432 2333334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011137 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282 (493)
Q Consensus 245 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 282 (493)
+.....++...|++++|+..|++..+. .|+......
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~ 195 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHH
Confidence 445566677788899999999888875 345444333
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.08 E-value=2e-08 Score=86.26 Aligned_cols=188 Identities=7% Similarity=-0.039 Sum_probs=126.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHH
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGP--TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL---NSF 176 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~ 176 (493)
++..+..+...+.+.|++++|...|+++....+.. ....+..+..+|.+.|++++|+..|+++.+.. +.+. ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHH
Confidence 44566667777888899999999999988754321 14677888888999999999999999888653 1122 134
Q ss_pred HHHHHHHHc------------------cCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 011137 177 NTILDLLCK------------------EKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238 (493)
Q Consensus 177 ~~ll~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 238 (493)
..+..++.. .|+.++|...|+++....|.+..++........ +...+
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~----------~~~~~----- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF----------LKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH----------HHHHH-----
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH----------HHHHH-----
Confidence 444444443 567777888887777766655555433221110 00010
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 011137 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID--VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308 (493)
Q Consensus 239 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 308 (493)
......+...+.+.|++++|+..|+++.+...... ...+..+..+|.+.|+.++|.+.++.+...+.
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 01223567788889999999999999887643211 35678888999999999999999998887643
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.08 E-value=2.7e-09 Score=107.49 Aligned_cols=186 Identities=9% Similarity=-0.000 Sum_probs=149.2
Q ss_pred HhcCChhHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 011137 218 CLVKRTNKALEVLKEMV--------DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289 (493)
Q Consensus 218 ~~~~~~~~A~~~~~~m~--------~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 289 (493)
...|++++|++.+++.. +... .+...+..+..++...|++++|++.++++.+.... +...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 77899999999999998 4332 25678888999999999999999999999887544 78899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011137 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369 (493)
Q Consensus 290 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 369 (493)
.|++++|++.|++..+... .+...|..+..+|.+.|++++ ...|++..+.+.. +...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999988643 367788899999999999999 9999999886433 667888999999999999999999
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHHh
Q 011137 370 VGRMKDDECEPNVQTYNILIRYFCDAGE--------IERGLELFEKMG 409 (493)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~a~~~~~~~~ 409 (493)
|+++.+.. +-+...+..+..++...|+ +++|.+.+..+.
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHhhcccC-cccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 99998763 3346677778887766554 555555555443
No 102
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.06 E-value=3.7e-08 Score=83.59 Aligned_cols=176 Identities=10% Similarity=0.044 Sum_probs=119.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----CHHHHHHHH
Q 011137 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG----EIKRARNVF 300 (493)
Q Consensus 225 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 300 (493)
+|++.|++..+.| +...+..+...|...+++++|+++|++..+.| +...+..|...|.. + ++++|++.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566666666654 56667777777777777777777777777664 55666667777766 5 777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHh----cCCHHHHHHHHH
Q 011137 301 DGMVNGGVLPSVATYNAMIQVLCK----KDSVENAILVFEEMVGKGYM-PNSTTYNVVIRGLCH----TGEMERALEFVG 371 (493)
Q Consensus 301 ~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~ 371 (493)
++..+.| +...+..|...|.. .+++++|...|++..+.|.. .+...+..|...|.. .+++++|+.+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7776653 55666667777766 67777788877777776431 015566667777766 667788888888
Q ss_pred HhhhCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHhcCC
Q 011137 372 RMKDDECEPNVQTYNILIRYFCDA-G-----EIERGLELFEKMGSGV 412 (493)
Q Consensus 372 ~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 412 (493)
+..+. ..+...+..|...|... | ++++|...|++..+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77765 22444566666666543 2 7778887777777654
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.05 E-value=2.5e-08 Score=85.61 Aligned_cols=188 Identities=10% Similarity=-0.035 Sum_probs=127.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcc---hHH
Q 011137 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCR-Q-SLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVI---SYN 211 (493)
Q Consensus 137 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~ 211 (493)
+...+..+...+...|++++|+..|+++.+.... + ....+..+..++.+.|++++|+..|+++....|.+.. ++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4556677778889999999999999999875311 1 1356778889999999999999999998876555543 455
Q ss_pred HHHHHHHh------------------cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011137 212 VIANGWCL------------------VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273 (493)
Q Consensus 212 ~l~~~~~~------------------~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 273 (493)
.+..++.. .|++++|...|+++.+..+. +...+...... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHH-----
Confidence 55555544 45666666666666654322 11111111000 0000000
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011137 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS--VATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343 (493)
Q Consensus 274 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 343 (493)
......+...|.+.|++++|+..|+++++...... ...+..+..+|.+.|+.++|...++.+...+.
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 01123567789999999999999999988532211 25688899999999999999999999988743
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.05 E-value=1e-09 Score=87.54 Aligned_cols=107 Identities=8% Similarity=-0.076 Sum_probs=42.7
Q ss_pred cCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011137 186 EKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265 (493)
Q Consensus 186 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 265 (493)
.|++++|+..++......+.+...+..+...|.+.|++++|++.|++..+.... +..+|..+..++.+.|++++|+..|
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~ 88 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECY 88 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHH
Confidence 334444444444333322223333334444444444444444444444433222 3334444444444444444444444
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 011137 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294 (493)
Q Consensus 266 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 294 (493)
++..+.... +..++..+...|.+.|+.+
T Consensus 89 ~~al~~~p~-~~~~~~~la~~~~~~~~~~ 116 (150)
T 4ga2_A 89 RRSVELNPT-QKDLVLKIAELLCKNDVTD 116 (150)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCChH
Confidence 444433221 3333444444444444433
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.04 E-value=4e-09 Score=86.70 Aligned_cols=54 Identities=4% Similarity=0.039 Sum_probs=21.7
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011137 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164 (493)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 164 (493)
...+.+.|++++|...+++..+..+ .+...+..+...+...|++++|+..++.+
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a 66 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATI 66 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 3334444444444444444333221 23333444444444444444444444443
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.04 E-value=7.6e-09 Score=92.45 Aligned_cols=165 Identities=11% Similarity=0.036 Sum_probs=90.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 011137 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG 216 (493)
Q Consensus 137 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 216 (493)
+...+..+...+...|++++|+..|+++.+.. +.+...+..+..++.+.|++++|...++++....+............
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 44455556666666666666666666666543 33455666666666666666666666665544333222222222233
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHH
Q 011137 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI-DVVTYTTIVHGFGVVGEIKR 295 (493)
Q Consensus 217 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~ 295 (493)
+...++.++|.+.+++....... +...+..+...+...|++++|...+.++.+..... +...+..++..+...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 44555555566666665554332 45555566666666666666666666665543221 14455555555655565555
Q ss_pred HHHHHHHH
Q 011137 296 ARNVFDGM 303 (493)
Q Consensus 296 A~~~~~~~ 303 (493)
|...|++.
T Consensus 274 a~~~~r~a 281 (287)
T 3qou_A 274 LASXYRRQ 281 (287)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.02 E-value=8.4e-10 Score=88.03 Aligned_cols=140 Identities=12% Similarity=0.033 Sum_probs=73.4
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHH
Q 011137 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALE 228 (493)
Q Consensus 149 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 228 (493)
...|++++|+..++...... +.+...+..+..+|.+.|++++|++.|++.....|.+..+|..+..+|...|++++|+.
T Consensus 8 ~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHH
Confidence 34455555555555554321 11223344455556666666666666665555445555566666666666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHhccC
Q 011137 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF-FLEMKKRKCEIDVVTYTTIVHGFGVVG 291 (493)
Q Consensus 229 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g 291 (493)
.|++..+.... +..++..+...+.+.|+.+++.+. +++..+..+. +..+|......+...|
T Consensus 87 ~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 87 CYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 66666554332 445555566666666665544433 3555544222 4455555444444444
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.02 E-value=3.4e-09 Score=87.16 Aligned_cols=61 Identities=7% Similarity=0.060 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011137 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP-SVATYNAMIQVLCKKDSVENAILVFEE 337 (493)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~ 337 (493)
...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|...|++
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 3444444444444444444444444444432211 123344444444444444444444443
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.97 E-value=1.1e-07 Score=80.76 Aligned_cols=128 Identities=14% Similarity=0.071 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhCCCCCCHHHHH
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAG----KADRAVKIFLSMHEHGCRQSLNSFN 177 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~ 177 (493)
++..+..+...+...+++++|...|++..+.| +...+..+...|.. + ++++|++.|++..+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44555555555555555555555555555443 34444444444444 3 5555555555554432 334444
Q ss_pred HHHHHHHc----cCCHHHHHHHHHHhhcCCCC--CcchHHHHHHHHHh----cCChhHHHHHHHHHHhC
Q 011137 178 TILDLLCK----EKKVEKAYNLFKVFRGKFKA--DVISYNVIANGWCL----VKRTNKALEVLKEMVDR 236 (493)
Q Consensus 178 ~ll~~~~~----~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~ 236 (493)
.|..+|.. .+++++|..+|++.....+. +..++..|...|.. .+++++|+++|++..+.
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 44444444 44555555555544432211 13444444444444 44445555555544443
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.97 E-value=1.6e-08 Score=100.06 Aligned_cols=163 Identities=6% Similarity=-0.105 Sum_probs=121.2
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 011137 116 LRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195 (493)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 195 (493)
.|++++|...+++..+... .+...+..+...+...|++++|++.|++..+.. +.+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999999877643 467889999999999999999999999998764 45678888999999999999999999
Q ss_pred HHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCC
Q 011137 196 FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA---GQIEEAWRFFLEMKKRK 272 (493)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~ 272 (493)
+++..+..+.+...+..+...+.+.|++++|.+.+++..+.... +...+..+..++... |+.++|.+.+++..+.+
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 99887777777889999999999999999999999999876543 677888899999999 99999999999988875
Q ss_pred CCCCHHHHHH
Q 011137 273 CEIDVVTYTT 282 (493)
Q Consensus 273 ~~~~~~~~~~ 282 (493)
.. +...+..
T Consensus 159 p~-~~~~~~~ 167 (568)
T 2vsy_A 159 VG-AVEPFAF 167 (568)
T ss_dssp CC-CSCHHHH
T ss_pred Cc-ccChHHH
Confidence 43 3334433
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.96 E-value=1.3e-08 Score=90.88 Aligned_cols=167 Identities=11% Similarity=0.026 Sum_probs=112.2
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH-HHHH
Q 011137 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT-YNIV 248 (493)
Q Consensus 170 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~-~~~l 248 (493)
+.+...+..+...+...|++++|...|++.....|.+...+..+...+...|++++|...++++.... |+... ....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence 34445566667777778888888888887776666677777788888888888888888887776543 33332 2222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 011137 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP-SVATYNAMIQVLCKKDS 327 (493)
Q Consensus 249 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~ 327 (493)
...+...++.++|...+++....... +...+..+...+...|++++|++.|.++.+..... +...+..++..|...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 33355666677777777777766433 66777777777777777777777777777643221 24567777777777777
Q ss_pred HHHHHHHHHHHH
Q 011137 328 VENAILVFEEMV 339 (493)
Q Consensus 328 ~~~a~~~~~~~~ 339 (493)
.++|...+++..
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 777777666543
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.96 E-value=1.6e-08 Score=99.94 Aligned_cols=155 Identities=10% Similarity=0.005 Sum_probs=123.0
Q ss_pred hChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011137 81 NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160 (493)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 160 (493)
.+.++|+..|+.+.... +.+...|..+...+.+.|++++|...+++..+... .+..++..+...|...|++++|++.
T Consensus 3 g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45678899998876543 45788999999999999999999999999988753 5688999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc---CChhHHHHHHHHHHhCC
Q 011137 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV---KRTNKALEVLKEMVDRG 237 (493)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~m~~~g 237 (493)
+++..+.. +.+...+..+..+|.+.|++++|.+.|++..+..+.+...+..+...+... |+.++|.+.+++..+.+
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 99998864 456788999999999999999999999998877777888999999999999 99999999999998775
Q ss_pred CC
Q 011137 238 LN 239 (493)
Q Consensus 238 ~~ 239 (493)
..
T Consensus 159 p~ 160 (568)
T 2vsy_A 159 VG 160 (568)
T ss_dssp CC
T ss_pred Cc
Confidence 44
No 113
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.94 E-value=2.2e-06 Score=82.42 Aligned_cols=204 Identities=7% Similarity=-0.034 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338 (493)
Q Consensus 259 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 338 (493)
+.+..+|+++... .+.+...|...+..+.+.|+.+.|..+|++.... +.+...|.. |....+.++. ++.+
T Consensus 196 ~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l 265 (493)
T 2uy1_A 196 SRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDL 265 (493)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHH
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHH
Confidence 4566788887775 3446778888888888888899999999988876 233322221 2221111111 2222
Q ss_pred HhC---------CCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHH
Q 011137 339 VGK---------GYMP---NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG-EIERGLELF 405 (493)
Q Consensus 339 ~~~---------~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~ 405 (493)
.+. +..+ ....|...+....+.++.+.|..+|+++ ... ..+...|...+..-...+ +.+.|..+|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~if 343 (493)
T 2uy1_A 266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIF 343 (493)
T ss_dssp HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHH
Confidence 111 0001 1234555666666677889999999888 321 234455543333222333 688999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483 (493)
Q Consensus 406 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (493)
+...+. .+-+...|...++.....|+.+. |..+|+.+. -....|...+.--...|+.+.+..+++...+
T Consensus 344 e~al~~-~~~~~~~~~~yid~e~~~~~~~~---aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 344 SSGLLK-HPDSTLLKEEFFLFLLRIGDEEN---ARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHH-CTTCHHHHHHHHHHHHHHTCHHH---HHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHH-CCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888775 22235556667776667777777 888888862 2467777777766777998888888875553
No 114
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.92 E-value=8.9e-07 Score=79.66 Aligned_cols=149 Identities=9% Similarity=0.000 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011137 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAG-KADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183 (493)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 183 (493)
.++.+-....+.+..++|+++++.+...++ -+..+|+.--..+...| .+++++++++.+.... +.+..+|+.-..++
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 344443444444555677777777776653 35566666666666666 4777777777777653 44556666665555
Q ss_pred Hcc-C-CHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChh--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011137 184 CKE-K-KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTN--------KALEVLKEMVDRGLNPNLTTYNIVLKGYF 253 (493)
Q Consensus 184 ~~~-g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 253 (493)
... + +.++++.+++.+....+.|..+|+.-...+.+.|.++ ++++.++++.+..+. |...|+.....+.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 554 5 6666777777766666666666666555555544444 455555555444333 4444444444444
Q ss_pred hcC
Q 011137 254 RAG 256 (493)
Q Consensus 254 ~~g 256 (493)
+.+
T Consensus 213 ~l~ 215 (349)
T 3q7a_A 213 SRP 215 (349)
T ss_dssp TST
T ss_pred hcc
Confidence 433
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.92 E-value=3e-08 Score=89.60 Aligned_cols=227 Identities=9% Similarity=0.020 Sum_probs=150.3
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHH
Q 011137 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEV 229 (493)
Q Consensus 150 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 229 (493)
..|++++|.+++++..+.. +.. .+...++++.|...|... ...|...|++++|...
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 3578889999998887532 111 011157888888877654 4567788999999999
Q ss_pred HHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHhccCCHHHHHHH
Q 011137 230 LKEMVDR----GLNP-NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR----KCE-IDVVTYTTIVHGFGVVGEIKRARNV 299 (493)
Q Consensus 230 ~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~ 299 (493)
|.+..+. |-.. -..+|+.+..+|.+.|++++|+..+++..+. |-. .-..++..+...|.. |++++|++.
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 8887643 2111 1357888888999999999999999887653 111 114567778888888 999999999
Q ss_pred HHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHhcCCHHHHHHH
Q 011137 300 FDGMVNGGVLP-----SVATYNAMIQVLCKKDSVENAILVFEEMVGK----GYMPN-STTYNVVIRGLCHTGEMERALEF 369 (493)
Q Consensus 300 ~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~~~~~~a~~~ 369 (493)
|++..+..... ...++..+...|.+.|++++|+..|++..+. +..+. ...+..+..++...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 98876531110 1356777888888899999999988887753 11111 12455566667777889999988
Q ss_pred HHHhhhCCC--CCC--HHHHHHHHHHHHhcCCHHHHHH
Q 011137 370 VGRMKDDEC--EPN--VQTYNILIRYFCDAGEIERGLE 403 (493)
Q Consensus 370 ~~~~~~~~~--~~~--~~~~~~l~~~~~~~g~~~~a~~ 403 (493)
|++.. ... ... ......++.++ ..|+.+.+.+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 88887 421 111 12344455544 4566655555
No 116
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.88 E-value=1.4e-06 Score=78.44 Aligned_cols=171 Identities=6% Similarity=-0.033 Sum_probs=127.0
Q ss_pred ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-C-CHHHHH
Q 011137 82 HALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLR-DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSA-G-KADRAV 158 (493)
Q Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~a~ 158 (493)
....|+++++.+.... |.+..+|+.--.++...| ++++++.+++.+....+ -+..+|+.-...+... + ++++++
T Consensus 69 ~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 69 KSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHH
Confidence 3467888888876544 457778888888888888 58899999999887754 5777888777777766 6 788888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH--------HHHHHHHHhhcCCCCCcchHHHHHHHHHhcCC-------h
Q 011137 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE--------KAYNLFKVFRGKFKADVISYNVIANGWCLVKR-------T 223 (493)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~ 223 (493)
++++.+.+.. +.+..+|+.-.-++.+.|.++ ++++.++++.+..+.|..+|+.....+.+.++ +
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHH
Confidence 8888888764 557777877666666656555 78888888877777788888888888877776 5
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011137 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257 (493)
Q Consensus 224 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 257 (493)
+++++.+++++...+. |...|+.+-..+.+.|+
T Consensus 225 ~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 225 QDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 7777777777766544 66677666666655554
No 117
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.87 E-value=4.7e-06 Score=80.13 Aligned_cols=355 Identities=7% Similarity=-0.018 Sum_probs=219.4
Q ss_pred HHHHHHHHHHh-hChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHhhC-CC-CCCHHHHHHHH
Q 011137 70 QLVDQIIKRLW-NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRD-YRTVWTLVHRMKSL-SL-GPTQKTFAIIA 145 (493)
Q Consensus 70 ~~~~~~l~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~l~ 145 (493)
.++...+..+. ...+.+..+|+..... .|+...|...+....+.++ .+....+|+..... |. ..+...|...+
T Consensus 16 ~vyer~l~~~P~~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 16 AIMEHARRLYMSKDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 34445555554 5678899999887764 3599999999998888774 35567778876653 43 34778888888
Q ss_pred HHHH----HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-------------cCCHHHHHHHHHHhhcCCC-CCc
Q 011137 146 ERYV----SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK-------------EKKVEKAYNLFKVFRGKFK-ADV 207 (493)
Q Consensus 146 ~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------------~g~~~~A~~~~~~~~~~~~-~~~ 207 (493)
..+. ..++.+.+..+|++.+......-...|......-.. .+.+..|..+++.+....+ .+.
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~ 172 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSV 172 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSH
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccH
Confidence 7654 346788999999999874221112233322221111 1123334444443332111 133
Q ss_pred chHHHHHHHHHhcC--C-----hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011137 208 ISYNVIANGWCLVK--R-----TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280 (493)
Q Consensus 208 ~~~~~l~~~~~~~~--~-----~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 280 (493)
..|...+..-...+ - .+.+..+|+++..... .+...|...+..+.+.|+.++|..++++.... +.+...+
T Consensus 173 ~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~ 249 (493)
T 2uy1_A 173 KNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLS 249 (493)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHH
T ss_pred HHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHH
Confidence 35655554432211 1 3456778998887543 35778888888889999999999999999987 3344333
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 011137 281 TTIVHGFGVVGEIKRARNVFDGMVNGG---------VLP---SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348 (493)
Q Consensus 281 ~~li~~~~~~g~~~~A~~~~~~~~~~~---------~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 348 (493)
...... ...+ +. ++.+.+.- ..+ ....|...+..+.+.++.+.|..+|+.. ... ..+..
T Consensus 250 ~~y~~~-~e~~---~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~ 320 (493)
T 2uy1_A 250 LYYGLV-MDEE---AV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPH 320 (493)
T ss_dssp HHHHHH-TTCT---HH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHH
T ss_pred HHHHhh-cchh---HH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChH
Confidence 322211 1111 11 22222110 001 1245666677777788899999999999 321 22344
Q ss_pred hHHHHHHHHHh-cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 011137 349 TYNVVIRGLCH-TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427 (493)
Q Consensus 349 ~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 427 (493)
.|......-.. .++.+.|..+|+...+.- +-+...+...++...+.|+.+.|..+|+.+.+ ....|...+.-=
T Consensus 321 v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE 394 (493)
T 2uy1_A 321 VFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYE 394 (493)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 44332222222 346999999999998752 33455667778888899999999999999842 577888888766
Q ss_pred hccCCcccHHHHHHHHHHHHH
Q 011137 428 FVRKKSDDLLVAGKLLIEMVD 448 (493)
Q Consensus 428 ~~~~~~~~~~~A~~~~~~m~~ 448 (493)
...|+.+. +.++++++.+
T Consensus 395 ~~~G~~~~---~r~v~~~~~~ 412 (493)
T 2uy1_A 395 FMVGSMEL---FRELVDQKMD 412 (493)
T ss_dssp HHHSCHHH---HHHHHHHHHH
T ss_pred HHCCCHHH---HHHHHHHHHH
Confidence 77788887 7777777663
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.86 E-value=6.9e-08 Score=87.21 Aligned_cols=226 Identities=8% Similarity=-0.033 Sum_probs=143.1
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 011137 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN 194 (493)
Q Consensus 115 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 194 (493)
..|++++|.+++++..+... .+ .+...++++.|...|.+. ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 35788899999988765321 11 011146677777766654 345666777777777
Q ss_pred HHHHhhcC---CC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 011137 195 LFKVFRGK---FK---ADVISYNVIANGWCLVKRTNKALEVLKEMVDR----GLNP-NLTTYNIVLKGYFRAGQIEEAWR 263 (493)
Q Consensus 195 ~~~~~~~~---~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~ 263 (493)
.|.+.... .. .-..+|+.+...|...|++++|+..|++..+. |-.. -..++..+..+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 77654321 10 01236777778888888888888888876532 1111 13567778888877 99999988
Q ss_pred HHHHHHHCCCCC-----CHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 011137 264 FFLEMKKRKCEI-----DVVTYTTIVHGFGVVGEIKRARNVFDGMVNG----GVLPS-VATYNAMIQVLCKKDSVENAIL 333 (493)
Q Consensus 264 ~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~~~~~~a~~ 333 (493)
.+++........ ...++..+...|...|++++|+..|++..+. +..+. ...+..+..++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 888876542110 1457778888899999999999999988653 11111 2256666777778899999999
Q ss_pred HHHHHHhCCCCC-Ch---hhHHHHHHHHHhcCCHHHHHH
Q 011137 334 VFEEMVGKGYMP-NS---TTYNVVIRGLCHTGEMERALE 368 (493)
Q Consensus 334 ~~~~~~~~~~~~-~~---~~~~~li~~~~~~~~~~~a~~ 368 (493)
.|++.. ..... +. .....++.++ ..|+.+.+..
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999888 42111 11 1233444444 4566655554
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.85 E-value=7e-07 Score=79.95 Aligned_cols=159 Identities=14% Similarity=0.099 Sum_probs=72.0
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCcc------hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HHHHHHH
Q 011137 180 LDLLCKEKKVEKAYNLFKVFRGKFKADVI------SYNVIANGWCLVKRTNKALEVLKEMVDRGLN-PN----LTTYNIV 248 (493)
Q Consensus 180 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~l 248 (493)
+..+...|++++|...++......+.+.. .+..+...+...|++++|+..+++..+.... .+ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 34455556666666665555443221111 1223444444455556666655555542111 11 1245555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC-----CCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCCC-HHHHHH
Q 011137 249 LKGYFRAGQIEEAWRFFLEMKKR-----KCE-IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG----GVLPS-VATYNA 317 (493)
Q Consensus 249 ~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~ 317 (493)
..+|...|++++|...++++.+. +.. ....++..+...|.+.|++++|++.+++..+. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 55555556666655555555421 000 11224444555555555555555555544321 11111 334444
Q ss_pred HHHHHHhcC-CHHHHHHHHHHH
Q 011137 318 MIQVLCKKD-SVENAILVFEEM 338 (493)
Q Consensus 318 li~~~~~~~-~~~~a~~~~~~~ 338 (493)
+..+|.+.| ++++|...+++.
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHH
Confidence 455555555 235555544443
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.84 E-value=3.1e-07 Score=77.86 Aligned_cols=129 Identities=16% Similarity=0.056 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011137 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184 (493)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 184 (493)
.+..+...+...|++++|...|++.. .++..++..+...|...|++++|++.|++..+.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34556667778888888888888763 4577888888888888888888888888887754 456777888888888
Q ss_pred ccCCHHHHHHHHHHhhcCCCCCc----------------chHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 011137 185 KEKKVEKAYNLFKVFRGKFKADV----------------ISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238 (493)
Q Consensus 185 ~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 238 (493)
..|++++|...|++.....+.+. ..+..+..++...|++++|.+.|++..+...
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 88888888888888776555444 6777888888888888888888888876543
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.82 E-value=3.7e-07 Score=77.31 Aligned_cols=128 Identities=12% Similarity=-0.036 Sum_probs=95.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc
Q 011137 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV 220 (493)
Q Consensus 141 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 220 (493)
+..+...+...|++++|+..|++.. .++...+..+..++...|++++|...|++.....+.+...|..+..++...
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 4455667777888888888887763 456778888888888888888888888877666666777788888888888
Q ss_pred CChhHHHHHHHHHHhCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011137 221 KRTNKALEVLKEMVDRGLN--------------P-NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272 (493)
Q Consensus 221 ~~~~~A~~~~~~m~~~g~~--------------p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 272 (493)
|++++|++.|++..+.... | ....+..+..++.+.|++++|.+.++...+..
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888888765322 1 12566777777778888888888887777664
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.78 E-value=2.4e-07 Score=74.83 Aligned_cols=127 Identities=12% Similarity=-0.040 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHh
Q 011137 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCL 219 (493)
Q Consensus 140 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 219 (493)
.+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++.....+.+...|..+...+..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34444455555555555555555555432 23444555555555555555555555555444444444555555555555
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHH
Q 011137 220 VKRTNKALEVLKEMVDRGLNPNLTTYN--IVLKGYFRAGQIEEAWRFFLEM 268 (493)
Q Consensus 220 ~~~~~~A~~~~~~m~~~g~~p~~~~~~--~l~~~~~~~g~~~~a~~~~~~~ 268 (493)
.|++++|.+.+++..+.... +...+. ..+..+.+.|++++|++.+...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 55555555555555543222 222222 2222244445555555555443
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.76 E-value=9.3e-07 Score=79.15 Aligned_cols=162 Identities=9% Similarity=-0.012 Sum_probs=80.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCC--C----cchHH
Q 011137 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQS-----LNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA--D----VISYN 211 (493)
Q Consensus 143 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~----~~~~~ 211 (493)
..+..+...|++++|.+.+.+..+...... ...+..+...+...|++++|...+++....... + ..+|+
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 344445555555555555555444321100 011233444455555666666665554322111 1 22555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh---C-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CC-CCHHHH
Q 011137 212 VIANGWCLVKRTNKALEVLKEMVD---R-GLNP--NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK----CE-IDVVTY 280 (493)
Q Consensus 212 ~l~~~~~~~~~~~~A~~~~~~m~~---~-g~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~-~~~~~~ 280 (493)
.+...|...|++++|+..+++..+ . +..+ ...++..+..+|.+.|++++|...+++..+.. .. .-..+|
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 666666666666666666665541 1 1111 11355666666666666666666666554321 00 014556
Q ss_pred HHHHHHHhccCCHHHH-HHHHHHHH
Q 011137 281 TTIVHGFGVVGEIKRA-RNVFDGMV 304 (493)
Q Consensus 281 ~~li~~~~~~g~~~~A-~~~~~~~~ 304 (493)
..+..+|.+.|++++| ...+++..
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6666666666666666 55555543
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.76 E-value=2.2e-07 Score=71.31 Aligned_cols=94 Identities=11% Similarity=0.048 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc
Q 011137 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV 220 (493)
Q Consensus 141 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 220 (493)
+......|.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..|++.....+.+...|..+..++...
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 3334444444444444444444444332 233444444444444444444444444444333333444444444444444
Q ss_pred CChhHHHHHHHHHHh
Q 011137 221 KRTNKALEVLKEMVD 235 (493)
Q Consensus 221 ~~~~~A~~~~~~m~~ 235 (493)
|++++|++.|++..+
T Consensus 95 ~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 95 REWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444443
No 125
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.76 E-value=1.7e-06 Score=77.49 Aligned_cols=91 Identities=13% Similarity=0.160 Sum_probs=43.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 011137 214 ANGWCLVKRTNKALEVLKEMVDRGL-NPNL----TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE-ID----VVTYTTI 283 (493)
Q Consensus 214 ~~~~~~~~~~~~A~~~~~~m~~~g~-~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 283 (493)
+..+...|++++|.+++++..+... .|+. ..+..+...+...|++++|+..++++...... .+ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4455566666666666666654321 1111 11223444444455555565555555543111 11 1234555
Q ss_pred HHHHhccCCHHHHHHHHHHHH
Q 011137 284 VHGFGVVGEIKRARNVFDGMV 304 (493)
Q Consensus 284 i~~~~~~g~~~~A~~~~~~~~ 304 (493)
...|...|++++|+..|+++.
T Consensus 162 g~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555555544
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.76 E-value=2.2e-07 Score=71.23 Aligned_cols=95 Identities=11% Similarity=-0.004 Sum_probs=44.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011137 176 FNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255 (493)
Q Consensus 176 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 255 (493)
+......|.+.|++++|++.|++..+..|.+..+|..+..++.+.|++++|++.+++.++.+.. +...|..+..++...
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHC
Confidence 3344444455555555555554444434444444444555555555555555555544443222 334444444444444
Q ss_pred CCHHHHHHHHHHHHHC
Q 011137 256 GQIEEAWRFFLEMKKR 271 (493)
Q Consensus 256 g~~~~a~~~~~~~~~~ 271 (493)
|++++|++.|++..+.
T Consensus 95 ~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 95 REWSKAQRAYEDALQV 110 (126)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 4444444444444443
No 127
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.74 E-value=7.6e-08 Score=85.61 Aligned_cols=195 Identities=12% Similarity=0.005 Sum_probs=116.9
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011137 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285 (493)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 285 (493)
+...+..+...+...|++++|+..|++..+.... +...|..+..++.+.|++++|.+.+++..+.... +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 4456667777777778888888888777765433 5677777778888888888888888877776433 6677777788
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 011137 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365 (493)
Q Consensus 286 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 365 (493)
+|...|++++|+..|++..+.+.. +...+...+....+. .++.. +..........+......+.. + ..|+.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTR-L-IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHH-H-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHH-H-HHHHHHH
Confidence 888888888888888777653110 000111111111111 11111 112222223334444333332 2 2688888
Q ss_pred HHHHHHHhhhCCCCCC-HHHHHHHHHHHHhc-CCHHHHHHHHHHHhcC
Q 011137 366 ALEFVGRMKDDECEPN-VQTYNILIRYFCDA-GEIERGLELFEKMGSG 411 (493)
Q Consensus 366 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 411 (493)
|++.++...+. .|+ ......+...+.+. +.+++|.++|.++.+.
T Consensus 154 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 98888888765 344 33444444445444 6688899999887653
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.74 E-value=3.1e-07 Score=74.19 Aligned_cols=95 Identities=15% Similarity=0.101 Sum_probs=46.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011137 176 FNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255 (493)
Q Consensus 176 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 255 (493)
+..+...+...|++++|...|++.....+.+..++..+...+...|++++|.+.+++..+.... +...+..+..++...
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHh
Confidence 3444444555555555555555544443444445555555555555555555555555443221 334444444555555
Q ss_pred CCHHHHHHHHHHHHHC
Q 011137 256 GQIEEAWRFFLEMKKR 271 (493)
Q Consensus 256 g~~~~a~~~~~~~~~~ 271 (493)
|++++|.+.++++.+.
T Consensus 95 ~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 95 GKFRAALRDYETVVKV 110 (166)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh
Confidence 5555555555554443
No 129
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.73 E-value=4.9e-08 Score=86.87 Aligned_cols=98 Identities=9% Similarity=-0.038 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 011137 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG 216 (493)
Q Consensus 137 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 216 (493)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.|++++|...+++.....+.+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44556666667777777777777777776643 34566677777777777777777777777666656666677777777
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 011137 217 WCLVKRTNKALEVLKEMVD 235 (493)
Q Consensus 217 ~~~~~~~~~A~~~~~~m~~ 235 (493)
+...|++++|+..|++..+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777654
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.72 E-value=4.8e-07 Score=68.87 Aligned_cols=94 Identities=11% Similarity=0.192 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHh
Q 011137 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCL 219 (493)
Q Consensus 140 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 219 (493)
.+..+...+...|++++|++.++++.+.. +.+...+..+..++...|++++|...++++....+.+..++..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 33334444444444444444444443321 22333344444444444444444444444333333333344444444444
Q ss_pred cCChhHHHHHHHHHH
Q 011137 220 VKRTNKALEVLKEMV 234 (493)
Q Consensus 220 ~~~~~~A~~~~~~m~ 234 (493)
.|++++|...++++.
T Consensus 90 ~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 90 QGDYDEAIEYYQKAL 104 (125)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHH
Confidence 444444444444443
No 131
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.71 E-value=1.3e-07 Score=79.44 Aligned_cols=97 Identities=14% Similarity=0.133 Sum_probs=43.1
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--CC
Q 011137 208 ISYNVIANGWCLVKRTNKALEVLKEMVD----RGLNP-NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR----KCE--ID 276 (493)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~~ 276 (493)
.++..+...+...|++++|...+++..+ .+..+ ...++..+...+...|++++|.+.+++..+. +.. ..
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3444444445555555555555544432 11111 1234444555555555555555555544332 101 11
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 011137 277 VVTYTTIVHGFGVVGEIKRARNVFDGMV 304 (493)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~A~~~~~~~~ 304 (493)
...+..+...+...|++++|...+++..
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2334444455555555555555555443
No 132
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.69 E-value=9.5e-07 Score=76.79 Aligned_cols=188 Identities=9% Similarity=-0.116 Sum_probs=88.3
Q ss_pred hhChHHHHHHHHHhhcCCCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHhh------------CCCC-----
Q 011137 80 WNHALKALHFFNILSYHPTYAHSPSSFDHA-------IDLAARLRDYRTVWTLVHRMKS------------LSLG----- 135 (493)
Q Consensus 80 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~~~~------------~~~~----- 135 (493)
..+...|.+.|..+.... |-....|.-+ ..++.+.++..++...+..-.. .|.-
T Consensus 19 ~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred CCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 345566666666664432 3355566655 3455555444444444444332 1100
Q ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCC--cchH
Q 011137 136 ---PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKAD--VISY 210 (493)
Q Consensus 136 ---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~ 210 (493)
.-..........+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+.......+. ...+
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~ 174 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAG 174 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHH
Confidence 001223334445555566666666665554432 222233334445555566666655555332211110 1244
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011137 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPN--LTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271 (493)
Q Consensus 211 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 271 (493)
..+..++...|++++|++.|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5555555555555555555555543222132 223444455555555555555555555554
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.69 E-value=1.8e-06 Score=77.28 Aligned_cols=165 Identities=15% Similarity=0.086 Sum_probs=103.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCc------chHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCC--HH
Q 011137 175 SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADV------ISYNVIANGWCLVKRTNKALEVLKEMVDRGL---NPN--LT 243 (493)
Q Consensus 175 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~---~p~--~~ 243 (493)
.+...+..+...|++++|.+.++......+... ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444455667777888888777766554332222 2234455666777788888888777764321 111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH---CCC-CC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCCC-H
Q 011137 244 TYNIVLKGYFRAGQIEEAWRFFLEMKK---RKC-EI--DVVTYTTIVHGFGVVGEIKRARNVFDGMVNG----GVLPS-V 312 (493)
Q Consensus 244 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~ 312 (493)
+++.+...|...|++++|...+++..+ ... .+ ...++..+...|...|++++|+..+++..+. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 677777788888888888888877662 211 11 1246777777788888888888887776542 11111 4
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 011137 313 ATYNAMIQVLCKKDSVENA-ILVFEEMV 339 (493)
Q Consensus 313 ~~~~~li~~~~~~~~~~~a-~~~~~~~~ 339 (493)
.+|..+..+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5677777777888888777 66566554
No 134
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.69 E-value=2.1e-07 Score=73.73 Aligned_cols=98 Identities=10% Similarity=-0.038 Sum_probs=58.3
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011137 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285 (493)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 285 (493)
+...+..+...+.+.|++++|+..|++.....+. +...|..+..++...|++++|+..|++..+.... +...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 4445556666666666666666666666654333 4555666666666666666666666666655332 4555556666
Q ss_pred HHhccCCHHHHHHHHHHHHH
Q 011137 286 GFGVVGEIKRARNVFDGMVN 305 (493)
Q Consensus 286 ~~~~~g~~~~A~~~~~~~~~ 305 (493)
+|...|++++|+..|++..+
T Consensus 113 ~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666655
No 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.68 E-value=5e-07 Score=69.78 Aligned_cols=119 Identities=9% Similarity=-0.060 Sum_probs=73.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 179 (493)
+.+...|..+...+.+.|++++|...+++...... .+..++..+...+...|++++|++.+++..+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 34556666677777777777777777777666532 356666666666777777777777776666543 3345566666
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc
Q 011137 180 LDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV 220 (493)
Q Consensus 180 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 220 (493)
..++...|++++|...|++.....+.+...+..+...+...
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 66666666666666666665544444445555555554443
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.68 E-value=2.2e-07 Score=80.79 Aligned_cols=188 Identities=8% Similarity=-0.075 Sum_probs=106.2
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHccCCHHHHHHHHHHhhcCCC------CC----------
Q 011137 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTI-------LDLLCKEKKVEKAYNLFKVFRGKFK------AD---------- 206 (493)
Q Consensus 150 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~g~~~~A~~~~~~~~~~~~------~~---------- 206 (493)
..++.+.|.+.|.++.+.. +.....|+.+ ...+.+.++..+++..+..-.+..+ -+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4677777888887777654 3445666655 3334444444444443333222100 00
Q ss_pred -----cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHH
Q 011137 207 -----VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID--VVT 279 (493)
Q Consensus 207 -----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~ 279 (493)
...+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .+. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 1123345566667777777777777766543 333244455556777777777777776443321 111 235
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011137 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS--VATYNAMIQVLCKKDSVENAILVFEEMVGK 341 (493)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 341 (493)
+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 56666677777777777777777664322132 234455556666777777777777777665
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.68 E-value=2e-07 Score=73.90 Aligned_cols=100 Identities=13% Similarity=0.075 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 011137 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG 216 (493)
Q Consensus 137 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 216 (493)
+...+..+...+.+.|++++|+..|+.+.... +.+...|..+..+|...|++++|+..|++.....|.+...|..+..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 34566667777777888888888888777654 45677777777788888888888888877776666677777788888
Q ss_pred HHhcCChhHHHHHHHHHHhCC
Q 011137 217 WCLVKRTNKALEVLKEMVDRG 237 (493)
Q Consensus 217 ~~~~~~~~~A~~~~~~m~~~g 237 (493)
|...|++++|.+.|++..+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 888888888888888777653
No 138
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.68 E-value=1.6e-07 Score=78.89 Aligned_cols=131 Identities=8% Similarity=-0.036 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhc------CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC--C
Q 011137 174 NSFNTILDLLCKEKKVEKAYNLFKVFRG------KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR----GLNP--N 241 (493)
Q Consensus 174 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p--~ 241 (493)
.++..+...+...|++++|...+++... ..+....++..+...+...|++++|.+.+++..+. +-.+ .
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3444444444444444444444443322 11112234555555555566666665555554332 1111 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 011137 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKR----KCE-IDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304 (493)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 304 (493)
...+..+...+...|++++|...+++.... +.. ....++..+...+...|++++|.+.+++..
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 234556666666667777776666665432 110 012234555666666666666666666554
No 139
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.68 E-value=5.7e-07 Score=68.42 Aligned_cols=95 Identities=12% Similarity=0.260 Sum_probs=45.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 011137 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288 (493)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 288 (493)
.|..+...+...|++++|.+.++++.+.... +..++..+...+...|++++|...++++.+... .+..++..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHH
Confidence 3444444444455555555555444433211 334444445555555555555555555444322 23444445555555
Q ss_pred ccCCHHHHHHHHHHHHH
Q 011137 289 VVGEIKRARNVFDGMVN 305 (493)
Q Consensus 289 ~~g~~~~A~~~~~~~~~ 305 (493)
..|++++|...|+++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 55555555555555544
No 140
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.68 E-value=3.6e-07 Score=70.59 Aligned_cols=116 Identities=10% Similarity=0.015 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 011137 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG 216 (493)
Q Consensus 137 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 216 (493)
+...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++.....+.+...+..+...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34556666666666666666666666666543 33455566666666666666666666665555444455556666666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011137 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254 (493)
Q Consensus 217 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 254 (493)
+...|++++|.+.|++..+.... +...+..+..++..
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMA 130 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHH
Confidence 66666666666666665543221 23344444444443
No 141
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.67 E-value=4.5e-07 Score=69.70 Aligned_cols=94 Identities=11% Similarity=0.002 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc
Q 011137 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV 220 (493)
Q Consensus 141 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 220 (493)
+..+...+...|++++|+..+++..... +.+...+..+..++...|++++|...++......+.+...+..+...+...
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSL 93 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHh
Confidence 3333344444444444444444443321 223333444444444444444444444443333333333444444444444
Q ss_pred CChhHHHHHHHHHHh
Q 011137 221 KRTNKALEVLKEMVD 235 (493)
Q Consensus 221 ~~~~~A~~~~~~m~~ 235 (493)
|++++|.+.+++..+
T Consensus 94 ~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 94 NKHVEAVAYYKKALE 108 (131)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 444444444444433
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.64 E-value=1.5e-07 Score=77.25 Aligned_cols=118 Identities=7% Similarity=0.098 Sum_probs=50.3
Q ss_pred cCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCH--HHHH
Q 011137 186 EKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG-YFRAGQI--EEAW 262 (493)
Q Consensus 186 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~g~~--~~a~ 262 (493)
.|++++|...++......+.+...|..+...|...|++++|...|++..+.... +...+..+..+ +...|++ ++|.
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHHHH
Confidence 344444444444433333334444444444444444444444444444433221 33344444444 3344444 4444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011137 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305 (493)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 305 (493)
..++++.+.... +...+..+...|...|++++|...|+++.+
T Consensus 102 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 102 AMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 444444443221 334444444444444555555555544444
No 143
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.62 E-value=9.4e-07 Score=67.83 Aligned_cols=120 Identities=9% Similarity=-0.008 Sum_probs=102.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 181 (493)
+...+..+...+...|+++.|...+++...... .+...+..+...+...|++++|++.++...+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 456788888999999999999999999887643 578889999999999999999999999998764 456788889999
Q ss_pred HHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCh
Q 011137 182 LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRT 223 (493)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 223 (493)
++...|++++|...|++.....+.+...+..+..++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999988776666778888888888877764
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.61 E-value=3e-07 Score=72.85 Aligned_cols=98 Identities=9% Similarity=-0.129 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHH
Q 011137 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGW 217 (493)
Q Consensus 138 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (493)
...+..+...+...|++++|+..|+...... +.+...|..+..++...|++++|+..|++.....|.+...+..+..+|
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3445555666666666666666666666543 345556666666666666666666666666555555566666666666
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 011137 218 CLVKRTNKALEVLKEMVDR 236 (493)
Q Consensus 218 ~~~~~~~~A~~~~~~m~~~ 236 (493)
...|++++|.+.|++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666543
No 145
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.61 E-value=3e-05 Score=69.43 Aligned_cols=92 Identities=10% Similarity=0.095 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCC-hhHHHHHHH
Q 011137 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK--KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKR-TNKALEVLK 231 (493)
Q Consensus 155 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~ 231 (493)
++++.+++.+.... +.+..+|+.-.-++...| ++++++.+++.+.+..+.|..+|+.-...+...|. ++++++.++
T Consensus 91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 34444444444332 233344444443343333 24444444444444444444444444444444444 244444444
Q ss_pred HHHhCCCCCCHHHHHHH
Q 011137 232 EMVDRGLNPNLTTYNIV 248 (493)
Q Consensus 232 ~m~~~g~~p~~~~~~~l 248 (493)
++++..+. |...|+..
T Consensus 170 ~~I~~~p~-N~SAW~~R 185 (331)
T 3dss_A 170 SLITRNFS-NYSSWHYR 185 (331)
T ss_dssp HHHHHCSC-CHHHHHHH
T ss_pred HHHHHCCC-CHHHHHHH
Confidence 44443332 33344333
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.60 E-value=1.9e-07 Score=74.01 Aligned_cols=94 Identities=10% Similarity=-0.108 Sum_probs=38.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 011137 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288 (493)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 288 (493)
.+..+...+...|++++|+..|++....... +...|..+..++...|++++|+..|++....... +...+..+..+|.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH
Confidence 3334444444444444444444444433222 3334444444444444444444444444433221 3333344444444
Q ss_pred ccCCHHHHHHHHHHHH
Q 011137 289 VVGEIKRARNVFDGMV 304 (493)
Q Consensus 289 ~~g~~~~A~~~~~~~~ 304 (493)
..|++++|++.|++..
T Consensus 101 ~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQ 116 (148)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 4444444444444433
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.59 E-value=3.4e-07 Score=75.07 Aligned_cols=119 Identities=6% Similarity=0.088 Sum_probs=59.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHH-HHhcCCh--hHHH
Q 011137 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG-WCLVKRT--NKAL 227 (493)
Q Consensus 151 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~A~ 227 (493)
.|++++|+..++...+.. +.+...|..+..+|...|++++|...|++.....+.+...+..+... +...|++ ++|.
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 344555555555544432 23444555555555555555555555555444333444455555555 4455555 5555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011137 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271 (493)
Q Consensus 228 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 271 (493)
..++++.+.... +...+..+..++...|++++|...++++.+.
T Consensus 102 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 102 AMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 555555544322 3445555555555556666666655555554
No 148
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.59 E-value=3.3e-05 Score=69.17 Aligned_cols=183 Identities=8% Similarity=0.014 Sum_probs=112.1
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHH
Q 011137 189 VEKAYNLFKVFRGKFKADVISYNVIANGWCLVKR--TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ-IEEAWRFF 265 (493)
Q Consensus 189 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-~~~a~~~~ 265 (493)
+++++.+++.+....|.+..+|+.-...+...++ +++++++++++.+.... |..+|+.-.-++...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 4566677766666666677777776666666663 67777777777766544 66666666666666666 46777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhcc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc------
Q 011137 266 LEMKKRKCEIDVVTYTTIVHGFGVV--------------GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK------ 325 (493)
Q Consensus 266 ~~~~~~~~~~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~------ 325 (493)
+.+.+..+. |...|+.....+.+. +.++++++.+++.+...+ -|..+|+-+-..+.+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCcccc
Confidence 777766544 666666655554443 346677777777766533 3566666554444443
Q ss_pred -----CCHHHHHHHHHHHHhCCCCCCh-hhHHHHHH---HHHhcCCHHHHHHHHHHhhhC
Q 011137 326 -----DSVENAILVFEEMVGKGYMPNS-TTYNVVIR---GLCHTGEMERALEFVGRMKDD 376 (493)
Q Consensus 326 -----~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~---~~~~~~~~~~a~~~~~~~~~~ 376 (493)
+.++++++.++++.+.. ||. ..+..++. +....|..+++..++.++++.
T Consensus 247 ~~~~~~~l~~el~~~~elle~~--pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELE--PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhC--cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 34677777777777653 332 22222211 112356677788888888765
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.58 E-value=1.2e-06 Score=80.00 Aligned_cols=124 Identities=11% Similarity=-0.051 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHccCCHHHHHHHHHHhhcC
Q 011137 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS--------------LNSFNTILDLLCKEKKVEKAYNLFKVFRGK 202 (493)
Q Consensus 137 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 202 (493)
+...+..+...|.+.|++++|+..|++..+...... ..+|..+..+|.+.|++++|+..|++....
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345677777778888888888888887776531111 244555555555555555555555555444
Q ss_pred CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011137 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261 (493)
Q Consensus 203 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 261 (493)
.+.+..+|..+..+|...|++++|+..|++..+.... +...+..+..++.+.|+.+++
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555443222 334444455555555555444
No 150
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.57 E-value=1.3e-06 Score=79.71 Aligned_cols=132 Identities=8% Similarity=-0.027 Sum_probs=115.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPT--------------QKTFAIIAERYVSAGKADRAVKIFLSMHEH 167 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 167 (493)
+...|..+...+.+.|++++|...|++......... ..+|..+..+|.+.|++++|+..+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456788889999999999999999999988754332 589999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHH-HHHHHHHH
Q 011137 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKA-LEVLKEMV 234 (493)
Q Consensus 168 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~m~ 234 (493)
. +.+...|..+..+|...|++++|...|++.....+.+..++..+..++.+.|+.++| .+.++.|.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 567889999999999999999999999998887777888999999999999999988 45666664
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.53 E-value=1.5e-07 Score=78.80 Aligned_cols=123 Identities=11% Similarity=0.017 Sum_probs=66.9
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011137 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN---------------LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272 (493)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 272 (493)
..+..+...+...|++++|+..|++..+....-. ...+..+..++.+.|++++|+..++...+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3455555566666666666666666654322100 2455556666666666666666666666553
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011137 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332 (493)
Q Consensus 273 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 332 (493)
. .+...+..+..+|...|++++|++.|++..+... .+...+..+..++...++.+++.
T Consensus 119 p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 K-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC--
T ss_pred c-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2455566666666666666666666666655321 23445555555555544444444
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.52 E-value=3.5e-06 Score=63.21 Aligned_cols=92 Identities=14% Similarity=0.050 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcC
Q 011137 142 AIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVK 221 (493)
Q Consensus 142 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 221 (493)
..+...+...|++++|...|+...... +.+...+..+..++...|++++|...+++.....+.+...+..+..++...|
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 333334444444444444444443321 1233333334444444444444444444333332333333444444444444
Q ss_pred ChhHHHHHHHHHH
Q 011137 222 RTNKALEVLKEMV 234 (493)
Q Consensus 222 ~~~~A~~~~~~m~ 234 (493)
++++|.+.+++..
T Consensus 87 ~~~~A~~~~~~~~ 99 (118)
T 1elw_A 87 RFEEAKRTYEEGL 99 (118)
T ss_dssp CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 4444444444443
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.52 E-value=1.5e-06 Score=66.46 Aligned_cols=95 Identities=19% Similarity=0.107 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHh
Q 011137 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCL 219 (493)
Q Consensus 140 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 219 (493)
.+......+...|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..|++.....+.+...|..+..++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34444455555555555555555555432 23445555555555555555555555555544444444555555555555
Q ss_pred cCChhHHHHHHHHHHh
Q 011137 220 VKRTNKALEVLKEMVD 235 (493)
Q Consensus 220 ~~~~~~A~~~~~~m~~ 235 (493)
.|++++|.+.|++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 5555555555555543
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.51 E-value=1.4e-07 Score=79.04 Aligned_cols=97 Identities=10% Similarity=-0.016 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHccCCHHHHHHHHHHhhc
Q 011137 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL----------------NSFNTILDLLCKEKKVEKAYNLFKVFRG 201 (493)
Q Consensus 138 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 201 (493)
...+..+...+...|++++|+..|++..+... .+. .++..+..++...|++++|+..++....
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFI-HTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT-TCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-cccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34455566667777777777777777665321 111 3444444444555555555555544444
Q ss_pred CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011137 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235 (493)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 235 (493)
..+.+..++..+..++...|++++|.+.|++..+
T Consensus 117 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 117 IDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3333444444444444445555555554444443
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.50 E-value=1.6e-06 Score=66.43 Aligned_cols=94 Identities=9% Similarity=0.017 Sum_probs=45.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011137 176 FNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255 (493)
Q Consensus 176 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 255 (493)
+..+...+.+.|++++|...|++.....+.+...|..+..++.+.|++++|+..+++..+.... +...|..+..++...
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHH
Confidence 3444444455555555555555444443444444555555555555555555555554443222 334444444445555
Q ss_pred CCHHHHHHHHHHHHH
Q 011137 256 GQIEEAWRFFLEMKK 270 (493)
Q Consensus 256 g~~~~a~~~~~~~~~ 270 (493)
|++++|...+++..+
T Consensus 86 ~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 86 KEYASALETLDAART 100 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHH
Confidence 555555555444444
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.48 E-value=6.4e-06 Score=61.70 Aligned_cols=113 Identities=8% Similarity=-0.041 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 181 (493)
.+..+..+...+...|++++|...++....... .+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 356788888999999999999999999987653 478889999999999999999999999998764 456788899999
Q ss_pred HHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 011137 182 LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG 216 (493)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 216 (493)
++...|++++|...++......+.+...+..+...
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 99999999999999999887666666666555443
No 157
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.44 E-value=1.3e-05 Score=75.98 Aligned_cols=54 Identities=15% Similarity=0.123 Sum_probs=27.9
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCcc-----------------hHHHHHHHHHhcCChhHHHHHHHHHH
Q 011137 181 DLLCKEKKVEKAYNLFKVFRGKFKADVI-----------------SYNVIANGWCLVKRTNKALEVLKEMV 234 (493)
Q Consensus 181 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~m~ 234 (493)
..+.+.|++++|++.|..+.+..+.... ++..++..|...|++++|.+.+..+.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3455667777777776665543222211 23445555555555555555555443
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.43 E-value=1.8e-06 Score=67.70 Aligned_cols=95 Identities=8% Similarity=-0.080 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011137 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184 (493)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 184 (493)
.+..+...+.+.|++++|...|+......+ .+...|..+..+|...|++++|+..|+...... +.+...+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 344444555555666666666665555432 345555555555666666666666666555543 334445555555555
Q ss_pred ccCCHHHHHHHHHHhhc
Q 011137 185 KEKKVEKAYNLFKVFRG 201 (493)
Q Consensus 185 ~~g~~~~A~~~~~~~~~ 201 (493)
..|++++|...|+....
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 56666666655555443
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.42 E-value=3.4e-06 Score=66.17 Aligned_cols=96 Identities=14% Similarity=-0.078 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHH
Q 011137 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWC 218 (493)
Q Consensus 139 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 218 (493)
..+..+...+...|++++|+..|+.+.... +.+...|..+..++...|++++|...|++.....|.+...+..+..++.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 344445555666666666666666665543 3455556666666666666666666666655554555556666666666
Q ss_pred hcCChhHHHHHHHHHHh
Q 011137 219 LVKRTNKALEVLKEMVD 235 (493)
Q Consensus 219 ~~~~~~~A~~~~~~m~~ 235 (493)
..|++++|.+.|++..+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666666554
No 160
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.41 E-value=2.1e-06 Score=63.79 Aligned_cols=95 Identities=12% Similarity=0.014 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH
Q 011137 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ--SLNSFNTILD 181 (493)
Q Consensus 104 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~ 181 (493)
..|..+...+.+.|++++|...+++..+... .+...+..+...+...|++++|++.+++..+.. +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 3344444444444444444444444433321 233344444444444444444444444444322 11 2333444444
Q ss_pred HHHcc-CCHHHHHHHHHHhh
Q 011137 182 LLCKE-KKVEKAYNLFKVFR 200 (493)
Q Consensus 182 ~~~~~-g~~~~A~~~~~~~~ 200 (493)
++... |++++|.+.++...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHhCCHHHHHHHHHHHh
Confidence 44444 44444444444433
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.40 E-value=5.1e-06 Score=63.65 Aligned_cols=58 Identities=21% Similarity=0.194 Sum_probs=25.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011137 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269 (493)
Q Consensus 211 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 269 (493)
..+...+.+.|++++|++.|++.++..+. +...|..+..+|.+.|++++|++.+++..
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444444444444444433222 33344444444444444444444444443
No 162
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.40 E-value=4.8e-06 Score=61.76 Aligned_cols=101 Identities=8% Similarity=0.030 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCC--CcchHHHHH
Q 011137 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA--DVISYNVIA 214 (493)
Q Consensus 137 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~ 214 (493)
+...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...|++.....+. +...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 45567778888999999999999999998764 456788899999999999999999999998877777 788999999
Q ss_pred HHHHhc-CChhHHHHHHHHHHhCCC
Q 011137 215 NGWCLV-KRTNKALEVLKEMVDRGL 238 (493)
Q Consensus 215 ~~~~~~-~~~~~A~~~~~~m~~~g~ 238 (493)
..+... |++++|.+.+++......
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhccc
Confidence 999999 999999999999987654
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.39 E-value=5e-06 Score=67.01 Aligned_cols=96 Identities=6% Similarity=-0.035 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHH
Q 011137 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWC 218 (493)
Q Consensus 139 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 218 (493)
..+..+...+...|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..|++.....+.+...|..+..+|.
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344444444445555555555555444432 2234444445555555555555555554444433444444555555555
Q ss_pred hcCChhHHHHHHHHHHh
Q 011137 219 LVKRTNKALEVLKEMVD 235 (493)
Q Consensus 219 ~~~~~~~A~~~~~~m~~ 235 (493)
..|++++|.+.|++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 55555555555555443
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=1.2e-05 Score=63.06 Aligned_cols=28 Identities=7% Similarity=0.096 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 139 KTFAIIAERYVSAGKADRAVKIFLSMHE 166 (493)
Q Consensus 139 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 166 (493)
..+..+...+...|++++|++.|++..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 56 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALG 56 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.38 E-value=6.6e-06 Score=63.83 Aligned_cols=95 Identities=9% Similarity=-0.043 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHH
Q 011137 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGW 217 (493)
Q Consensus 138 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (493)
...+..+...+...|++++|+..|+...... +.+...+..+..++...|++++|...++......+.+...|..+..++
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3344444444444444444444444444332 223334444444444444444444444443333333334444444444
Q ss_pred HhcCChhHHHHHHHHH
Q 011137 218 CLVKRTNKALEVLKEM 233 (493)
Q Consensus 218 ~~~~~~~~A~~~~~~m 233 (493)
...|++++|...|++.
T Consensus 88 ~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 88 LEMESYDEAIANLQRA 103 (137)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHH
Confidence 4444444444444443
No 166
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.38 E-value=4.6e-06 Score=63.89 Aligned_cols=95 Identities=14% Similarity=0.120 Sum_probs=45.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCC----HHHHHHHH
Q 011137 176 FNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL--NPN----LTTYNIVL 249 (493)
Q Consensus 176 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~--~p~----~~~~~~l~ 249 (493)
+..+...+.+.|++++|+..|++.....|.+..+|+.+..+|.+.|++++|++.+++.++... .++ ..+|..+.
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 334444455555555555555544443444444555555555555555555555555443211 001 12344455
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 011137 250 KGYFRAGQIEEAWRFFLEMKK 270 (493)
Q Consensus 250 ~~~~~~g~~~~a~~~~~~~~~ 270 (493)
.++...|++++|++.|++...
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 555555555555555555544
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.36 E-value=8.9e-06 Score=65.51 Aligned_cols=107 Identities=8% Similarity=-0.011 Sum_probs=93.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 181 (493)
+...|..+...+.+.|++++|...|++...... .+...|..+..+|...|++++|+..|++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 567788899999999999999999999988753 578899999999999999999999999999875 456888999999
Q ss_pred HHHccCCHHHHHHHHHHhhcCCCCCcchH
Q 011137 182 LLCKEKKVEKAYNLFKVFRGKFKADVISY 210 (493)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 210 (493)
+|...|++++|...|++.....+.+...|
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 116 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDA 116 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence 99999999999999998876655555544
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.36 E-value=6.2e-06 Score=63.98 Aligned_cols=101 Identities=11% Similarity=-0.023 Sum_probs=89.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 179 (493)
+.++..|..+...+...|++++|...|+....... .+...+..+..++...|++++|+..++...+.. +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 45788999999999999999999999999988754 578899999999999999999999999998865 4578889999
Q ss_pred HHHHHccCCHHHHHHHHHHhhcC
Q 011137 180 LDLLCKEKKVEKAYNLFKVFRGK 202 (493)
Q Consensus 180 l~~~~~~g~~~~A~~~~~~~~~~ 202 (493)
..++...|++++|...|++....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999887543
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=1.5e-05 Score=62.52 Aligned_cols=114 Identities=12% Similarity=-0.011 Sum_probs=89.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPT----QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS 175 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 175 (493)
+.+...+..+...+...|++++|...|++..+.. |+ ...+..+...|...|++++|+..+++..+.. +.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 3467788888999999999999999999998765 45 6778888888999999999999998888753 446777
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 011137 176 FNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG 216 (493)
Q Consensus 176 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 216 (493)
+..+..++...|++++|...|++.....+.+...+..+...
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 88888888888899888888888766555555555444443
No 170
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.34 E-value=3.7e-05 Score=72.90 Aligned_cols=196 Identities=9% Similarity=-0.002 Sum_probs=135.8
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC
Q 011137 110 IDLAARLRDYRTVWTLVHRMKSLSLGPT----------------QKTFAIIAERYVSAGKADRAVKIFLSMHEHGC-RQS 172 (493)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~ 172 (493)
.+.+.+.|++++|.+.|..+.+...... ..++..+...|...|++++|.+.+..+...-- .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456778899999999988876543211 23577788899999999999999988764211 111
Q ss_pred H----HHHHHHHHHHHccCCHHHHHHHHHHhhcC------CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC--CC--
Q 011137 173 L----NSFNTILDLLCKEKKVEKAYNLFKVFRGK------FKADVISYNVIANGWCLVKRTNKALEVLKEMVDR--GL-- 238 (493)
Q Consensus 173 ~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--g~-- 238 (493)
. .+.+.+...+...|+.+.|..+++..... ...-..++..+...|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 22333444455678899998888765321 1112346788899999999999999999887542 11
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011137 239 NP-NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR----KCEID--VVTYTTIVHGFGVVGEIKRARNVFDGMVN 305 (493)
Q Consensus 239 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 305 (493)
.+ ....+..++..|...|++++|..++++.... +.++. ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 2357888889999999999999999887653 11111 34566777788888999999888877654
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.32 E-value=4.4e-06 Score=64.02 Aligned_cols=94 Identities=11% Similarity=0.099 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCC-------cchHHHH
Q 011137 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKAD-------VISYNVI 213 (493)
Q Consensus 141 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~l 213 (493)
+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++......+.+ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3334444444444444444444444332 2233344444444444444444444444333221111 3334444
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 011137 214 ANGWCLVKRTNKALEVLKEMVD 235 (493)
Q Consensus 214 ~~~~~~~~~~~~A~~~~~~m~~ 235 (493)
...+...|++++|.+.|++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4444445555555555544444
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.30 E-value=4.7e-06 Score=63.23 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=8.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 011137 210 YNVIANGWCLVKRTNKALEVLKE 232 (493)
Q Consensus 210 ~~~l~~~~~~~~~~~~A~~~~~~ 232 (493)
+..+..++...|++++|+..+++
T Consensus 88 ~~~la~~~~~~g~~~~A~~~~~~ 110 (121)
T 1hxi_A 88 HAALAVSHTNEHNANAALASLRA 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33333333333333333333333
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.29 E-value=4.6e-06 Score=63.24 Aligned_cols=93 Identities=4% Similarity=-0.106 Sum_probs=43.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 011137 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290 (493)
Q Consensus 211 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 290 (493)
..+...+.+.|++++|+..|++..+.... +...|..+..++...|++++|+..+++..+.... +...+..+..+|...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 33444444455555555555554443222 3444444444555555555555555554444222 344444455555555
Q ss_pred CCHHHHHHHHHHHHH
Q 011137 291 GEIKRARNVFDGMVN 305 (493)
Q Consensus 291 g~~~~A~~~~~~~~~ 305 (493)
|++++|+..|++.++
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555554443
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.28 E-value=4.2e-06 Score=64.11 Aligned_cols=96 Identities=14% Similarity=0.167 Sum_probs=46.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CC----HHHHHHH
Q 011137 175 SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN--PN----LTTYNIV 248 (493)
Q Consensus 175 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~--p~----~~~~~~l 248 (493)
.+..+...+...|++++|...|++.....+.+...+..+...+...|++++|...+++..+.... ++ ..++..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 34444555555555555555555544443444445555555555555555555555554432110 11 3344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 011137 249 LKGYFRAGQIEEAWRFFLEMKK 270 (493)
Q Consensus 249 ~~~~~~~g~~~~a~~~~~~~~~ 270 (493)
..++...|++++|.+.++.+.+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4444444555555555444444
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.23 E-value=3e-05 Score=59.27 Aligned_cols=20 Identities=15% Similarity=0.132 Sum_probs=7.4
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 011137 249 LKGYFRAGQIEEAWRFFLEM 268 (493)
Q Consensus 249 ~~~~~~~g~~~~a~~~~~~~ 268 (493)
..++...|++++|...++.+
T Consensus 83 a~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 33333333333333333333
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.22 E-value=3.9e-05 Score=58.61 Aligned_cols=91 Identities=15% Similarity=0.161 Sum_probs=45.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCC---cchHHHHHHHHH
Q 011137 145 AERYVSAGKADRAVKIFLSMHEHGCRQSL---NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKAD---VISYNVIANGWC 218 (493)
Q Consensus 145 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~ 218 (493)
...+...|++++|+..|+.+.+.. +.+. ..+..+..++...|++++|...|+.+....+.+ ..++..+..++.
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 344445555555555555554432 1111 244445555555555555555555544433333 334555555555
Q ss_pred hcCChhHHHHHHHHHHhC
Q 011137 219 LVKRTNKALEVLKEMVDR 236 (493)
Q Consensus 219 ~~~~~~~A~~~~~~m~~~ 236 (493)
..|++++|...|+++.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 555555555555555543
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.20 E-value=7.2e-06 Score=65.48 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 245 YNIVLKGYFRAGQIEEAWRFFLEM 268 (493)
Q Consensus 245 ~~~l~~~~~~~g~~~~a~~~~~~~ 268 (493)
+..+...+...|++++|.+.+++.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a 115 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKH 115 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444444445555554444443
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.18 E-value=9.6e-06 Score=64.74 Aligned_cols=131 Identities=12% Similarity=0.032 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCC--C----Ccc
Q 011137 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCR-QS----LNSFNTILDLLCKEKKVEKAYNLFKVFRGKFK--A----DVI 208 (493)
Q Consensus 140 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~----~~~ 208 (493)
++..+...+...|++++|+..+++..+.... .+ ..++..+...+...|++++|...+++.....+ . ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444555555555566555555554432100 11 12455556666666666666666655432110 0 133
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011137 209 SYNVIANGWCLVKRTNKALEVLKEMVDR----GLNP-NLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270 (493)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 270 (493)
.+..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5666777777777888777777776532 1111 123455666667777777777777766544
No 179
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.17 E-value=3.2e-05 Score=73.77 Aligned_cols=88 Identities=13% Similarity=-0.017 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011137 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253 (493)
Q Consensus 174 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 253 (493)
..|..+..+|.+.|++++|+..+++.....+.+..+|..+..+|...|++++|+..|++..+.... +...+..+..++.
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 455555555555666666666555555444445555555666666666666666666665554322 3344555555555
Q ss_pred hcCCHHHHH
Q 011137 254 RAGQIEEAW 262 (493)
Q Consensus 254 ~~g~~~~a~ 262 (493)
+.++.+++.
T Consensus 397 ~~~~~~~a~ 405 (457)
T 1kt0_A 397 KAKEHNERD 405 (457)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
No 180
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.15 E-value=2.1e-05 Score=72.57 Aligned_cols=138 Identities=9% Similarity=-0.011 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHH
Q 011137 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWC 218 (493)
Q Consensus 139 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 218 (493)
..+..+...+.+.|++++|++.|++..+.- +... .....+ ......+.+..+|..+..+|.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~~~-------~~~~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAEDA-------DGAKLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSCHH-------HHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccChH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 346667777888888888888888776520 0000 000000 000111113344555555555
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 011137 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297 (493)
Q Consensus 219 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 297 (493)
+.|++++|++.+++..+.... +...|..+..+|...|++++|++.+++..+.... +...+..+...+...++.+++.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555544322 3445555555555555555555555555544222 4444455555555555444443
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.15 E-value=2.2e-05 Score=74.97 Aligned_cols=96 Identities=11% Similarity=0.050 Sum_probs=74.6
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011137 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286 (493)
Q Consensus 207 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 286 (493)
..+|..+..+|.+.|++++|+..+++.++.... +...|..+..+|...|++++|+..|+++.+.... +...+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 467888889999999999999999998876544 6788888999999999999999999998887433 66778888888
Q ss_pred HhccCCHHHHHH-HHHHHH
Q 011137 287 FGVVGEIKRARN-VFDGMV 304 (493)
Q Consensus 287 ~~~~g~~~~A~~-~~~~~~ 304 (493)
+.+.++.+++.+ .+..|.
T Consensus 395 ~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 888888877664 445443
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.14 E-value=4.7e-06 Score=79.93 Aligned_cols=118 Identities=12% Similarity=-0.047 Sum_probs=71.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHH
Q 011137 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKA 226 (493)
Q Consensus 147 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 226 (493)
.+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..+++..+..+.+..+|..+..+|...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3445667777777777666543 344666666777777777777777777766665555666677777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 011137 227 LEVLKEMVDRGLNPNLTTYNIVLKG--YFRAGQIEEAWRFFL 266 (493)
Q Consensus 227 ~~~~~~m~~~g~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~ 266 (493)
++.|++..+.... +...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777776654322 22344444444 666677777777766
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.13 E-value=5.1e-06 Score=79.70 Aligned_cols=121 Identities=14% Similarity=0.037 Sum_probs=88.9
Q ss_pred HHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 011137 179 ILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258 (493)
Q Consensus 179 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 258 (493)
+...+.+.|++++|.+.|++..+..+.+..+|..+..+|.+.|++++|++.+++..+.... +..++..+..+|.+.|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCH
Confidence 3445667888888888888877766667788888888888888888888888888876543 667788888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH--HhccCCHHHHHHHHH
Q 011137 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHG--FGVVGEIKRARNVFD 301 (493)
Q Consensus 259 ~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 301 (493)
++|.+.+++..+.... +...+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888776432 34455555555 777788888888887
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.11 E-value=3.6e-06 Score=63.41 Aligned_cols=84 Identities=13% Similarity=0.080 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHH
Q 011137 152 GKADRAVKIFLSMHEHG--CRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEV 229 (493)
Q Consensus 152 g~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 229 (493)
|++++|+..|++..+.+ -+.+...+..+..+|...|++++|...|++.....|.+..++..+..++...|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 44444444444444432 1222334444444455555555555555444444444444444455555555555555555
Q ss_pred HHHHHh
Q 011137 230 LKEMVD 235 (493)
Q Consensus 230 ~~~m~~ 235 (493)
+++...
T Consensus 84 ~~~al~ 89 (117)
T 3k9i_A 84 LLKIIA 89 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 185
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.11 E-value=0.00011 Score=71.93 Aligned_cols=172 Identities=6% Similarity=0.005 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC----------HHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcC--C
Q 011137 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK----------VEKAYNLFKVFRGKFKADVISYNVIANGWCLVK--R 222 (493)
Q Consensus 155 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~ 222 (493)
++|++.++.+.... +.+..+|+.--.++...|+ +++++..++.+....+.+..+|+.-...+.+.+ +
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 45566666666543 3344555555444444444 666666666666655666666666666666666 5
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----------
Q 011137 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG-QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV----------- 290 (493)
Q Consensus 223 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------- 290 (493)
++++++.++++.+.... +..+|+.-..++.+.| .++++++.++++.+..+. +...|+.....+.+.
T Consensus 125 ~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccccc
Confidence 57777777777665544 5666666666666666 666677776666665443 566666655554442
Q ss_pred ---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011137 291 ---GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330 (493)
Q Consensus 291 ---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 330 (493)
+.++++++.+++.+.... -|...|..+-..+.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCCccc
Confidence 456888888888877533 367778777777776666433
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.10 E-value=2.4e-05 Score=72.21 Aligned_cols=92 Identities=11% Similarity=-0.005 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011137 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320 (493)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 320 (493)
+...|..+..+|.+.|++++|++.+++..+.... +...|..+..+|...|++++|++.|++..+... .+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 4578889999999999999999999999987543 788999999999999999999999999988633 36777888888
Q ss_pred HHHhcCCHHHHHHH
Q 011137 321 VLCKKDSVENAILV 334 (493)
Q Consensus 321 ~~~~~~~~~~a~~~ 334 (493)
++...++.+++.+.
T Consensus 350 ~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 350 VKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888777653
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.09 E-value=0.00026 Score=69.18 Aligned_cols=172 Identities=8% Similarity=0.005 Sum_probs=122.1
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-
Q 011137 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGK----------ADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK- 187 (493)
Q Consensus 119 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g- 187 (493)
.++|++.++.+...++ -+..+|+.--..+...|+ ++++++.++.+.+.. +.+..+|+.-.-++.+.|
T Consensus 45 ~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 3466777777666543 345566665555555555 778888888777654 456677777777777777
Q ss_pred -CHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------
Q 011137 188 -KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVK-RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA---------- 255 (493)
Q Consensus 188 -~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~---------- 255 (493)
+++++++.++++.+..+.+..+|+.-...+.+.| .++++++.++++++..+. |..+|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccc
Confidence 6688888888877777777778887777777777 778888888888776655 677777766666553
Q ss_pred ----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 011137 256 ----GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294 (493)
Q Consensus 256 ----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 294 (493)
+.++++++.+++....... +...|..+-..+.+.++.+
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCS
T ss_pred cccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCcc
Confidence 4578888999888877544 7788888887777776643
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.08 E-value=5.8e-06 Score=62.25 Aligned_cols=91 Identities=8% Similarity=-0.031 Sum_probs=59.9
Q ss_pred hcCChHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 011137 115 RLRDYRTVWTLVHRMKSLS--LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192 (493)
Q Consensus 115 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A 192 (493)
..|++++|...|++..+.+ -+.+..++..+..+|...|++++|+..|++..+.. +.+...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 3567777777777777654 12345567777777778888888888888777654 44566777777778888888888
Q ss_pred HHHHHHhhcCCCCC
Q 011137 193 YNLFKVFRGKFKAD 206 (493)
Q Consensus 193 ~~~~~~~~~~~~~~ 206 (493)
...|++.....+.+
T Consensus 81 ~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 81 VELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhCCCc
Confidence 88777765543333
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.05 E-value=4.3e-05 Score=61.27 Aligned_cols=97 Identities=8% Similarity=0.020 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC-------C----------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcC
Q 011137 140 TFAIIAERYVSAGKADRAVKIFLSMHEH-------G----------CRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK 202 (493)
Q Consensus 140 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~----------~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 202 (493)
.+......+.+.|++++|+..|.+.... + .+.+...|..+..+|.+.|++++|+..++.....
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4444555556666666666666655542 0 0112234555555555555555555555555444
Q ss_pred CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011137 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236 (493)
Q Consensus 203 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 236 (493)
.+.+..+|..+..+|...|++++|...|++..+.
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4445555555555555555555555555555543
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.99 E-value=5e-05 Score=60.88 Aligned_cols=62 Identities=15% Similarity=0.104 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011137 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305 (493)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 305 (493)
..|..+..+|.+.|++++|+..++...+... .+...|..+..+|...|++++|...|++..+
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 4455555555556666666666555555432 2455555555666666666666666665555
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.95 E-value=3.2e-05 Score=70.53 Aligned_cols=147 Identities=6% Similarity=-0.075 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011137 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184 (493)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 184 (493)
.+..+...+.+.|++++|...|++..... |+... +...|+.+++...+. ...|..+..+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 35555566666777777777777765542 22221 111222222221110 125666777777
Q ss_pred ccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHH
Q 011137 185 KEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG-YFRAGQIEEAWR 263 (493)
Q Consensus 185 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~g~~~~a~~ 263 (493)
+.|++++|+..+++.....+.+..+|..+..+|...|++++|...|++..+.... +...+..+... ....+..+++.+
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777766655666677777777777777777777777777654322 33344444444 223455666677
Q ss_pred HHHHHHHC
Q 011137 264 FFLEMKKR 271 (493)
Q Consensus 264 ~~~~~~~~ 271 (493)
.|..+...
T Consensus 321 ~~~~~l~~ 328 (338)
T 2if4_A 321 MYKGIFKG 328 (338)
T ss_dssp --------
T ss_pred HHHHhhCC
Confidence 77776654
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.92 E-value=0.00012 Score=57.28 Aligned_cols=94 Identities=14% Similarity=0.001 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C-----CH-----HHHHHHHHHHHccCCHHHHHHHHHHhhcC------
Q 011137 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCR-Q-----SL-----NSFNTILDLLCKEKKVEKAYNLFKVFRGK------ 202 (493)
Q Consensus 140 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-----~~-----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------ 202 (493)
.+......+...|++++|+..|++..+.... | +. ..|..+..++.+.|++++|+..+++....
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3444555566667777777777766653211 0 11 14444455555555555555544443332
Q ss_pred -CCCCcchH----HHHHHHHHhcCChhHHHHHHHHH
Q 011137 203 -FKADVISY----NVIANGWCLVKRTNKALEVLKEM 233 (493)
Q Consensus 203 -~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~m 233 (493)
.|.+...| .....++...|++++|+..|++.
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 23333344 44444444444444444444444
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.91 E-value=0.00019 Score=55.67 Aligned_cols=109 Identities=8% Similarity=-0.005 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHH
Q 011137 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH----TGEMERAL 367 (493)
Q Consensus 292 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~ 367 (493)
++++|++.|++..+.|. ++.. +...|...+.+++|...|++..+.| +...+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 34445555555444431 1111 3334444444444555555544442 33444444444444 44555555
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcC
Q 011137 368 EFVGRMKDDECEPNVQTYNILIRYFCD----AGEIERGLELFEKMGSG 411 (493)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 411 (493)
++|++..+.| +...+..|...|.. .+++++|.+.|++..+.
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 5555555443 34444455555554 45555555555555544
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.91 E-value=2e-05 Score=71.83 Aligned_cols=149 Identities=13% Similarity=0.021 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHH
Q 011137 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGW 217 (493)
Q Consensus 138 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (493)
...+..+...+.+.|++++|+..|++..... |+.. .+...|+.+++...+. ...|..+..+|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~-------~~~~~~~~~~~~~~l~---------~~~~~nla~~~ 240 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDF-------MFQLYGKYQDMALAVK---------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHH-------HHTCCHHHHHHHHHHH---------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccch-------hhhhcccHHHHHHHHH---------HHHHHHHHHHH
Confidence 3456667777888889999999988877642 3322 1233444444443221 23788999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHH
Q 011137 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG-FGVVGEIKRA 296 (493)
Q Consensus 218 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A 296 (493)
.+.|++++|+..+++..+.... +...|..+..+|...|++++|...|++..+.... +...+..+... ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876543 6789999999999999999999999999876433 55566666655 3445677888
Q ss_pred HHHHHHHHHC
Q 011137 297 RNVFDGMVNG 306 (493)
Q Consensus 297 ~~~~~~~~~~ 306 (493)
...|..|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 9999988764
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.90 E-value=0.00011 Score=57.55 Aligned_cols=61 Identities=10% Similarity=-0.008 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHH----HHHHHHHhccCCHHHHHHHHHHHHH
Q 011137 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKR-------KCEIDVVTY----TTIVHGFGVVGEIKRARNVFDGMVN 305 (493)
Q Consensus 244 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~~~~ 305 (493)
.|..+..++.+.|++++|+..+++.++. ... +...| .....++...|++++|+..|++.++
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4445555555555555555555554443 221 33444 5555556666666666666665543
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.87 E-value=0.0002 Score=55.45 Aligned_cols=111 Identities=10% Similarity=0.092 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 011137 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD----AGEIERG 401 (493)
Q Consensus 326 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 401 (493)
+++++|...|++..+.| .++.. +...|...+.+++|.++|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35566666666666655 22222 4444555555666666666666654 45555566666655 5666666
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHhc----cCCcccHHHHHHHHHHHHHCC
Q 011137 402 LELFEKMGSGVCLPNLDTYNILISSMFV----RKKSDDLLVAGKLLIEMVDRG 450 (493)
Q Consensus 402 ~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~~~~A~~~~~~m~~~g 450 (493)
.+.|++..+.| +...+..|...|.. .++.++ |.+++++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~---A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQ---AVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH---HHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHH---HHHHHHHHHHCC
Confidence 66666666543 44555555555554 344444 666666665554
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.80 E-value=1.8e-05 Score=58.65 Aligned_cols=60 Identities=8% Similarity=0.022 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011137 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165 (493)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 165 (493)
.|..+...+.+.|++++|...|++.....+ .+...+..+..++...|++++|++.+++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 333344444444444444444444433321 233334444444444444444444444443
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.77 E-value=7.3e-05 Score=71.30 Aligned_cols=125 Identities=10% Similarity=-0.025 Sum_probs=81.0
Q ss_pred HHhccCCHHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCC-hhhHH
Q 011137 286 GFGVVGEIKRARNVFDGMVNG---GVLP----SVATYNAMIQVLCKKDSVENAILVFEEMVGK-----GY-MPN-STTYN 351 (493)
Q Consensus 286 ~~~~~g~~~~A~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~ 351 (493)
.+...|++++|+.++++.++. -..+ ...+++.|..+|...|++++|..++++..+- |. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345677888888887776542 1111 1346777888888888888888877765532 21 222 35677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhC-----CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 352 VVIRGLCHTGEMERALEFVGRMKDD-----EC--EPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 352 ~li~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
.|...|...|++++|+.++++..+. |. +....+.+.+..++...|.+++|+.+|+++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888888888888887776532 21 11233455666777777788888888877765
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.76 E-value=4e-05 Score=56.64 Aligned_cols=96 Identities=9% Similarity=-0.049 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCC------cchH
Q 011137 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKAD------VISY 210 (493)
Q Consensus 137 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~ 210 (493)
+...+..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|+..+++.....+.+ ...+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 46678888999999999999999999998764 5578889999999999999999999999988776656 6678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 011137 211 NVIANGWCLVKRTNKALEVLKEM 233 (493)
Q Consensus 211 ~~l~~~~~~~~~~~~A~~~~~~m 233 (493)
..+..++...|+.+.|.+.++++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHhHhhhHhHHHHh
Confidence 88888888888888877665543
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.75 E-value=0.00016 Score=68.95 Aligned_cols=126 Identities=9% Similarity=-0.036 Sum_probs=94.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-----CC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-----CC-CCC-HHHHH
Q 011137 251 GYFRAGQIEEAWRFFLEMKKR-----KC--EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG-----GV-LPS-VATYN 316 (493)
Q Consensus 251 ~~~~~g~~~~a~~~~~~~~~~-----~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~-~~~~~ 316 (493)
.+...|++++|+.++++..+. |. +....+++.|...|...|++++|+.++++.++. |. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999887654 21 113567889999999999999999999987642 22 122 45788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC-----CCC-CC-hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 011137 317 AMIQVLCKKDSVENAILVFEEMVGK-----GYM-PN-STTYNVVIRGLCHTGEMERALEFVGRMKDD 376 (493)
Q Consensus 317 ~li~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 376 (493)
.|...|...|++++|+.++++..+- |.. |+ ..+...+-.++...+.+++|+.+|.++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999877642 322 22 334566667788889999999999988763
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.69 E-value=0.00024 Score=52.91 Aligned_cols=62 Identities=11% Similarity=0.077 Sum_probs=24.1
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268 (493)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 268 (493)
+...+..+...+...|++++|+..|++..+.... +...|..+..++...|++++|...|++.
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333444444444444444444444444332211 2333333344444444444444444333
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.66 E-value=0.00037 Score=49.04 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=8.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 011137 144 IAERYVSAGKADRAVKIFLSMH 165 (493)
Q Consensus 144 l~~~~~~~g~~~~a~~~~~~~~ 165 (493)
+...+...|++++|+..|++..
T Consensus 15 la~~~~~~~~~~~A~~~~~~a~ 36 (91)
T 1na3_A 15 LGNAYYKQGDYDEAIEYYQKAL 36 (91)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHH
Confidence 3333333444444444443333
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.64 E-value=0.00034 Score=49.25 Aligned_cols=61 Identities=8% Similarity=0.153 Sum_probs=29.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011137 175 SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235 (493)
Q Consensus 175 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 235 (493)
.+..+...+...|++++|...|++.....+.+...+..+...+...|++++|.+.+++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3444444455555555555555544433333444444445555555555555555554444
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.64 E-value=0.00025 Score=52.77 Aligned_cols=78 Identities=6% Similarity=-0.017 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011137 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235 (493)
Q Consensus 157 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 235 (493)
|++.|++..+.. +.+...+..+..+|...|++++|...|++.....+.+...|..+..++...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444432 234445555555555555555555555555444444455555555555566666666665555543
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.56 E-value=0.00016 Score=56.59 Aligned_cols=97 Identities=12% Similarity=0.037 Sum_probs=53.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH----------HHHHHHHHHhhcCCCCCcchHHHHHHHHHhc
Q 011137 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV----------EKAYNLFKVFRGKFKADVISYNVIANGWCLV 220 (493)
Q Consensus 151 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 220 (493)
.+.+++|++.++...+.. +.+...|+.+..++...+++ ++|+..|++..+..|.+..+|+.+..+|...
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 344555555555555543 34555555555555555443 3666666655555555555666666666554
Q ss_pred -----------CChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011137 221 -----------KRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250 (493)
Q Consensus 221 -----------~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 250 (493)
|++++|++.|++..+. .|+...|...+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3667777777776654 344444443333
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.54 E-value=0.00027 Score=55.21 Aligned_cols=56 Identities=18% Similarity=0.115 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011137 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV-----------GEIKRARNVFDGMVNGGVLPSVATYNA 317 (493)
Q Consensus 259 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~ 317 (493)
++|+..|++.++.... +..+|..+..+|... |++++|++.|++.++ +.|+...|..
T Consensus 63 ~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~ 129 (158)
T 1zu2_A 63 QEAITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLK 129 (158)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHH
Confidence 3555555555554322 444455555555444 356666666666665 2344444433
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.37 E-value=0.00081 Score=48.55 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=24.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 011137 175 SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233 (493)
Q Consensus 175 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 233 (493)
.+..+..+|...|++++|+..|++.....+.+...|..+..+|...|++++|.+.|++.
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33344444444444444444444433333333334444444444444444444444433
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.31 E-value=0.0011 Score=47.88 Aligned_cols=63 Identities=19% Similarity=0.233 Sum_probs=33.4
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011137 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269 (493)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 269 (493)
+...+..+...|...|++++|++.|++..+.... +...|..+..+|...|++++|.+.+++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555555555555544322 33455555555555555555555555544
No 209
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.06 E-value=0.024 Score=58.29 Aligned_cols=156 Identities=15% Similarity=0.124 Sum_probs=95.1
Q ss_pred HHHHhcCChhHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 011137 215 NGWCLVKRTNKALE-VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293 (493)
Q Consensus 215 ~~~~~~~~~~~A~~-~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 293 (493)
......+++++|.+ ++..+ ++......++..+.+.|..++|.++.+. .. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCH
Confidence 33445677777766 44211 1122336677777778888887766531 11 113344567888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 011137 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373 (493)
Q Consensus 294 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 373 (493)
+.|.++.+.+ .+...|..+...+.+.++++.|.+.|..+.. |..+...+...|+.+...++.+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 8888775433 3667888888888888888888888877643 344555555567776666665555
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 011137 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409 (493)
Q Consensus 374 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 409 (493)
...| -++.-..+|.+.|++++|.+++.++.
T Consensus 734 ~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 734 ETTG------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHcC------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 5543 12333445566777777777666554
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.02 E-value=0.018 Score=51.78 Aligned_cols=64 Identities=13% Similarity=0.009 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011137 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341 (493)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 341 (493)
+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++....
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 44444444444444455555555555544432 34444444444444455555555555444443
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.82 E-value=0.0071 Score=54.41 Aligned_cols=66 Identities=18% Similarity=0.149 Sum_probs=37.4
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011137 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271 (493)
Q Consensus 204 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 271 (493)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++....
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3444555555555555566666666666665543 45555555555555666666666666655554
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.79 E-value=0.055 Score=55.57 Aligned_cols=151 Identities=10% Similarity=0.088 Sum_probs=85.1
Q ss_pred HHhcCChHHHHH-HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH
Q 011137 113 AARLRDYRTVWT-LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEK 191 (493)
Q Consensus 113 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 191 (493)
....+++++|.+ ++..+ ++......+++.+.+.|..+.|+++.+. .. .-.......|++++
T Consensus 609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHH
Confidence 345677777765 44221 1123336677777778888877765421 11 11233456788888
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011137 192 AYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271 (493)
Q Consensus 192 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 271 (493)
|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+...++.+.....
T Consensus 671 A~~~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 671 ARDLLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 87765443 2566788888888888888888888877642 233444444566666555554444443
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 011137 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301 (493)
Q Consensus 272 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 301 (493)
|. ++....+|.+.|++++|++++.
T Consensus 737 ~~------~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 737 GK------FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp TC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred Cc------hHHHHHHHHHcCCHHHHHHHHH
Confidence 21 1222333444555555554443
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.76 E-value=0.0023 Score=45.77 Aligned_cols=14 Identities=14% Similarity=0.359 Sum_probs=5.3
Q ss_pred cCCHHHHHHHHHHH
Q 011137 151 AGKADRAVKIFLSM 164 (493)
Q Consensus 151 ~g~~~~a~~~~~~~ 164 (493)
.|++++|+..|+++
T Consensus 13 ~~~~~~A~~~~~~a 26 (99)
T 2kc7_A 13 QGDIENALQALEEF 26 (99)
T ss_dssp HTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 33333333333333
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.70 E-value=0.0031 Score=59.07 Aligned_cols=87 Identities=11% Similarity=0.021 Sum_probs=57.9
Q ss_pred hcCCHHHHHHHHHHHHhC---CCCC---C-hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-----C-CCC-CHHHHHHHH
Q 011137 324 KKDSVENAILVFEEMVGK---GYMP---N-STTYNVVIRGLCHTGEMERALEFVGRMKDD-----E-CEP-NVQTYNILI 389 (493)
Q Consensus 324 ~~~~~~~a~~~~~~~~~~---~~~~---~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~~~~~l~ 389 (493)
..|++++|+.++++..+. -+.| + ..+++.+..+|...|++++|+.++++.+.. | -.| ...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346777787777766542 1111 1 356777788888888888888887776542 2 112 234577888
Q ss_pred HHHHhcCCHHHHHHHHHHHhc
Q 011137 390 RYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 390 ~~~~~~g~~~~a~~~~~~~~~ 410 (493)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888888888888888877654
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.68 E-value=0.0051 Score=57.64 Aligned_cols=92 Identities=11% Similarity=-0.019 Sum_probs=62.2
Q ss_pred HHHHHccCCHHHHHHHHHHhhcC----CCCC----cchHHHHHHHHHhcCChhHHHHHHHHHHhC-----C-CCCC-HHH
Q 011137 180 LDLLCKEKKVEKAYNLFKVFRGK----FKAD----VISYNVIANGWCLVKRTNKALEVLKEMVDR-----G-LNPN-LTT 244 (493)
Q Consensus 180 l~~~~~~g~~~~A~~~~~~~~~~----~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-----g-~~p~-~~~ 244 (493)
+.-+.+.|++++|+.++++.... ..++ ..+++.++..|...|++++|+.++++.... | -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33455677888888887766432 2222 246777888888888888888888876531 2 1222 356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011137 245 YNIVLKGYFRAGQIEEAWRFFLEMKKR 271 (493)
Q Consensus 245 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 271 (493)
++.|...|...|++++|+.++++..+.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 788888888888888888888776653
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.67 E-value=0.007 Score=56.72 Aligned_cols=92 Identities=11% Similarity=0.095 Sum_probs=59.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC---CCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-----C-CCC-CHHH
Q 011137 319 IQVLCKKDSVENAILVFEEMVGKG---YMP----NSTTYNVVIRGLCHTGEMERALEFVGRMKDD-----E-CEP-NVQT 384 (493)
Q Consensus 319 i~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~~ 384 (493)
+..+.+.|++++|+.++++..+.. +.| ...+++.+..+|...|++++|+.++++++.. | ..| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556677788888777776431 111 1346677777777788888888777766532 1 111 2345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 385 YNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 385 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
++.|...|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 67777778888888888777776654
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.65 E-value=0.0026 Score=59.53 Aligned_cols=62 Identities=6% Similarity=-0.033 Sum_probs=28.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh-----CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011137 209 SYNVIANGWCLVKRTNKALEVLKEMVD-----RGL-NPN-LTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270 (493)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~g~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 270 (493)
+++.|...|...|++++|+.++++... .|. .|+ ..+++.|...|...|++++|+.++++..+
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 344444444444444444444444331 111 122 23455555555555555555555554443
No 218
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.62 E-value=0.13 Score=38.20 Aligned_cols=141 Identities=16% Similarity=0.162 Sum_probs=91.8
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHH
Q 011137 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKAL 227 (493)
Q Consensus 148 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 227 (493)
+.-.|..++..++..+.... .+..-+|-+|--....-+-+-..++++.+.+.+.-+ .+|+.....
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis------------~C~NlKrVi 81 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD------------KCQNLKSVV 81 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG------------GCSCTHHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH------------hhhcHHHHH
Confidence 44568888888888887763 355566666666666666666777777766544222 234444444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 011137 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307 (493)
Q Consensus 228 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 307 (493)
..+-.+- -+.......++.+...|+-|+-.+++..+... .++++...-.+..+|.+.|+..+|.+++.+.-+.|
T Consensus 82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 4443332 13445566677777888888888888776443 45567777778888888888888888888877776
Q ss_pred CC
Q 011137 308 VL 309 (493)
Q Consensus 308 ~~ 309 (493)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 53
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.59 E-value=0.018 Score=40.88 Aligned_cols=59 Identities=12% Similarity=0.158 Sum_probs=45.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 011137 109 AIDLAARLRDYRTVWTLVHRMKSLSLGPTQK-TFAIIAERYVSAGKADRAVKIFLSMHEHG 168 (493)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 168 (493)
....+.+.|++++|...+++..+... .+.. .+..+..+|...|++++|++.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 44567778888888888888877643 4566 78888888888888888888888887754
No 220
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.43 E-value=0.22 Score=39.42 Aligned_cols=45 Identities=11% Similarity=0.077 Sum_probs=22.2
Q ss_pred HccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 011137 184 CKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233 (493)
Q Consensus 184 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 233 (493)
...|+++.|.++.+.+. +...|..|.......|+++-|.+.|.+.
T Consensus 16 L~lg~l~~A~e~a~~l~-----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKLN-----DSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHHC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHhC-----CHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 34455555555444431 3444555555555555555555555544
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.25 E-value=0.075 Score=37.32 Aligned_cols=45 Identities=13% Similarity=0.157 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011137 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165 (493)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 165 (493)
++|..++++..+..+ .++.+...+...+.+.|++++|+..|+.+.
T Consensus 26 ~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 26 DEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444333321 233333333334444444444444444443
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.23 E-value=0.025 Score=39.87 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 011137 190 EKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234 (493)
Q Consensus 190 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 234 (493)
++|..++++.....|.++.+...+...+.+.|++++|+..|+++.
T Consensus 26 ~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 26 DEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333333333333333333333333333333444444444444333
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.22 E-value=0.037 Score=42.70 Aligned_cols=90 Identities=13% Similarity=0.066 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHhccCCcccH
Q 011137 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG---EIERGLELFEKMGSGVCLP--NLDTYNILISSMFVRKKSDDL 436 (493)
Q Consensus 362 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~~~~~~~ 436 (493)
....+.+-|.+....+ .++..+.-.+..++++++ ++++++.++++..+.. .| +...+..+.-+|.+.|++++
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~- 89 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK- 89 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHH-
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHH-
Confidence 4556677777776665 468888888888888888 6668888888888753 23 35556666677888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHH
Q 011137 437 LVAGKLLIEMVDRGFMPRKFTF 458 (493)
Q Consensus 437 ~~A~~~~~~m~~~g~~p~~~~~ 458 (493)
|.+.++.+++ +.|+..--
T Consensus 90 --A~~y~~~lL~--ieP~n~QA 107 (152)
T 1pc2_A 90 --ALKYVRGLLQ--TEPQNNQA 107 (152)
T ss_dssp --HHHHHHHHHH--HCTTCHHH
T ss_pred --HHHHHHHHHh--cCCCCHHH
Confidence 8888888887 46764433
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.18 Score=39.97 Aligned_cols=101 Identities=7% Similarity=0.097 Sum_probs=55.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011137 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331 (493)
Q Consensus 252 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 331 (493)
....|+++.|.++.+++ .+...|..|.+.....|+++-|++.|.+..+ +..+.-.|.-.|+.++.
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34556666666665554 1455666666666666666666666665432 33444445555666555
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 011137 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373 (493)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 373 (493)
..+-+.....| -++....++...|+++++.++|.+.
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 55544444432 2344444455566666666666443
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.08 E-value=0.61 Score=40.26 Aligned_cols=91 Identities=18% Similarity=0.153 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-CCHH
Q 011137 224 NKALEVLKEMVDRGLNPN---LTTYNIVLKGYFRA-----GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV-GEIK 294 (493)
Q Consensus 224 ~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~ 294 (493)
..|...+++.++. .|+ ...|..+...|.+. |+.++|.+.|++..+.+..-+..++....+.++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 5566666666654 344 45677777777773 88888888888888765543467777777877774 8888
Q ss_pred HHHHHHHHHHHCCCC--CCHHHHH
Q 011137 295 RARNVFDGMVNGGVL--PSVATYN 316 (493)
Q Consensus 295 ~A~~~~~~~~~~~~~--~~~~~~~ 316 (493)
.+.+.+++.+..... |+....+
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHH
Confidence 888888888876555 5543333
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.98 E-value=0.095 Score=45.23 Aligned_cols=85 Identities=16% Similarity=0.154 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCH
Q 011137 293 IKRARNVFDGMVNGGVLPS---VATYNAMIQVLCK-----KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT-GEM 363 (493)
Q Consensus 293 ~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~ 363 (493)
...|...+++.++. .|+ ...|..+...|.+ -|+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45666666666663 333 4466666666666 367777777777776654322355555666666663 677
Q ss_pred HHHHHHHHHhhhCCCC
Q 011137 364 ERALEFVGRMKDDECE 379 (493)
Q Consensus 364 ~~a~~~~~~~~~~~~~ 379 (493)
+++.+.+++.+.....
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 7777777777665433
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.90 E-value=0.063 Score=38.67 Aligned_cols=25 Identities=12% Similarity=-0.055 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH
Q 011137 105 SFDHAIDLAARLRDYRTVWTLVHRM 129 (493)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~ 129 (493)
-+..+...+.+.|++..|...|+..
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~A 31 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQA 31 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHH
Confidence 3334444444444444444444443
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.89 E-value=0.09 Score=40.53 Aligned_cols=80 Identities=10% Similarity=0.020 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 011137 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG---EMERALEFVGRMKDDECEP--NVQTYNILIRYFCDAGEIERGLE 403 (493)
Q Consensus 329 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~ 403 (493)
..+.+-|.+....|. ++..+...+..++++.+ +.++++.+++...+.. .| +...+-.|.-+|.+.|++++|++
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344455555544443 45555555666666666 4556666666666653 23 34455556666677777777777
Q ss_pred HHHHHhc
Q 011137 404 LFEKMGS 410 (493)
Q Consensus 404 ~~~~~~~ 410 (493)
.++.+.+
T Consensus 93 y~~~lL~ 99 (152)
T 1pc2_A 93 YVRGLLQ 99 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777766
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.78 E-value=0.12 Score=37.14 Aligned_cols=78 Identities=6% Similarity=-0.069 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcch
Q 011137 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG------CRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVIS 209 (493)
Q Consensus 136 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 209 (493)
.+..-+..+...+...|+++.|...|+...+.- -.....++..+..++.+.|+++.|...+++.....|.+..+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 466677788999999999999999999887531 13456788999999999999999999999887655555555
Q ss_pred HHHH
Q 011137 210 YNVI 213 (493)
Q Consensus 210 ~~~l 213 (493)
.+.+
T Consensus 83 ~~n~ 86 (104)
T 2v5f_A 83 NGNL 86 (104)
T ss_dssp HHHH
T ss_pred HhhH
Confidence 4443
No 230
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.55 E-value=2.5 Score=43.23 Aligned_cols=224 Identities=8% Similarity=0.004 Sum_probs=100.8
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CCCHHHHH--HHH
Q 011137 216 GWCLVKRTNKALEVLKEMVDRGLNPNL--TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC-------EIDVVTYT--TIV 284 (493)
Q Consensus 216 ~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~--~li 284 (493)
+....|+.++++.+++.....+-..+. ..-..+.-+....|..+++..++.......- .+....-. .|.
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 344566666666666655432101122 2223333444555555566666655544311 00111112 222
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH--HHHhc
Q 011137 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVA--TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR--GLCHT 360 (493)
Q Consensus 285 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~ 360 (493)
-+|...++ +++.+.+..+..... .... .-..|...+.-.|+-+....++..+.+.. +......+.. ++...
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 22333343 344444454444211 0111 11122333445666666666666655531 2222222333 33456
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHH
Q 011137 361 GEMERALEFVGRMKDDECEPNVQTY--NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438 (493)
Q Consensus 361 ~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~ 438 (493)
|+.+.+..+++.+.... .|....- ..+..+|+..|+.....+++..+.+. ...+..-...+.-++...|+.+.
T Consensus 538 g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~--- 612 (963)
T 4ady_A 538 GRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTT--- 612 (963)
T ss_dssp TCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSS---
T ss_pred CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHH---
Confidence 77777777777766532 2222211 23444566677766666677776653 11223322333334444555555
Q ss_pred HHHHHHHHHHC
Q 011137 439 AGKLLIEMVDR 449 (493)
Q Consensus 439 A~~~~~~m~~~ 449 (493)
+.++++.+.+.
T Consensus 613 v~rlv~~L~~~ 623 (963)
T 4ady_A 613 VPRIVQLLSKS 623 (963)
T ss_dssp HHHHTTTGGGC
T ss_pred HHHHHHHHHhc
Confidence 55555555443
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.52 E-value=0.52 Score=35.13 Aligned_cols=137 Identities=8% Similarity=0.062 Sum_probs=70.7
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 011137 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299 (493)
Q Consensus 220 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 299 (493)
.|.+++..++..+..... +..-||.+|--....-+-+-..++++.+-+. .|. ..+|++......
T Consensus 20 dG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHHH
Confidence 466666666666665431 4445555555544455555555555544332 111 223444444444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 011137 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378 (493)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 378 (493)
+-.+- .+....+..+..+...|.-++-.+++.++.. +.+|++...-.+..+|.+.|+..+|.+++.++-+.|+
T Consensus 84 ~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 43322 1334445555556666666666666666433 2345555666666666666666666666666665553
No 232
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.50 E-value=2 Score=43.96 Aligned_cols=243 Identities=11% Similarity=0.041 Sum_probs=139.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC-------CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCH--HHH
Q 011137 211 NVIANGWCLVKRTNKALEVLKEMVDRGL-------NPNLTTYNIVLKGYFRAGQ-IEEAWRFFLEMKKRKCEIDV--VTY 280 (493)
Q Consensus 211 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~-------~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~--~~~ 280 (493)
..+.-+....|..+++..++.......- .+....-..+.-++.-.|. -+++.+.+..+...... .. ..-
T Consensus 415 AllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~-~~~~~Aa 493 (963)
T 4ady_A 415 SLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSA-TSGEAAA 493 (963)
T ss_dssp HHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCH-HHHHHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCH-HHHHHHH
Confidence 3444556667776778887777664321 0112222333333433443 24566666666554211 11 122
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhCCCCCChh-hHH---HHH
Q 011137 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA--MIQVLCKKDSVENAILVFEEMVGKGYMPNST-TYN---VVI 354 (493)
Q Consensus 281 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~---~li 354 (493)
..|...+...|+-+....++..+.+.. +...... +.-++...|+.+.+..+.+.+... .+.. -|. .+.
T Consensus 494 lALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alg 567 (963)
T 4ady_A 494 LGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIA 567 (963)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHH
T ss_pred HHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 234445667888888888888877642 3333333 334455788999999998888764 2322 232 334
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcc
Q 011137 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434 (493)
Q Consensus 355 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 434 (493)
-+|+..|+.....++++.+.... ..+......+.-++...|+.+.+.++++.+.+.+ .|...--..+.-+....|...
T Consensus 568 lAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~ 645 (963)
T 4ady_A 568 LAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGL 645 (963)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCC
T ss_pred HHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCc
Confidence 56778889877777999888753 2334444444455556777777778887776653 345444444545555555553
Q ss_pred cHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011137 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467 (493)
Q Consensus 435 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 467 (493)
. +++..+..+.. .+|..+-...+.++..
T Consensus 646 ~--~aid~L~~L~~---D~d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 646 Q--SAIDVLDPLTK---DPVDFVRQAAMIALSM 673 (963)
T ss_dssp H--HHHHHHHHHHT---CSSHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHcc---CCCHHHHHHHHHHHHH
Confidence 2 28888888875 4565554444444444
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.49 E-value=0.11 Score=38.43 Aligned_cols=82 Identities=12% Similarity=0.007 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHhcCCCC-CCHHHHHHHHHHHhccCCcccHHH
Q 011137 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER---GLELFEKMGSGVCL-PNLDTYNILISSMFVRKKSDDLLV 438 (493)
Q Consensus 363 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~-p~~~~~~~li~~~~~~~~~~~~~~ 438 (493)
...+.+-|.+....| .++..+--.+..++.++.+... ++.+++++.+.+.+ -.......|.-++.+.|++++
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~--- 92 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK--- 92 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH---
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH---
Confidence 334444444443333 2444444455555555444333 55555555543211 122222333344555555555
Q ss_pred HHHHHHHHHH
Q 011137 439 AGKLLIEMVD 448 (493)
Q Consensus 439 A~~~~~~m~~ 448 (493)
|.+.++.+++
T Consensus 93 A~~~~~~lL~ 102 (126)
T 1nzn_A 93 ALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.34 E-value=0.25 Score=37.64 Aligned_cols=51 Identities=6% Similarity=-0.014 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 011137 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377 (493)
Q Consensus 326 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 377 (493)
++.++|.++|+.+++.+-.. ...|....+.-.+.|++..|.+++...+..+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 45555555555554331111 3333333333344555555555555555544
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.12 E-value=0.16 Score=38.69 Aligned_cols=101 Identities=11% Similarity=0.044 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHHHHhcCCh------HHHHHHHHHHhhCCCCCCH-HHHHHHHHH------HHHcCCHHHHHHHHHHHHh
Q 011137 100 AHSPSSFDHAIDLAARLRDY------RTVWTLVHRMKSLSLGPTQ-KTFAIIAER------YVSAGKADRAVKIFLSMHE 166 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~------~~a~~~~~~~~~~~~~~~~-~~~~~l~~~------~~~~g~~~~a~~~~~~~~~ 166 (493)
+.|.++|-..+..+.+.|++ ++..++|++.... ++|+. ..|...+.. +...++.++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34777888888887777887 7777777776654 33431 111111111 1223455555555555543
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcC
Q 011137 167 HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK 202 (493)
Q Consensus 167 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 202 (493)
.. +.=..+|......-.+.|++..|.+++....+.
T Consensus 89 ~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 89 NC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp HC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred Hh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 31 111444444444444555555555555544443
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.80 E-value=0.4 Score=35.51 Aligned_cols=82 Identities=11% Similarity=-0.010 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH---HHHHHHHhhhCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 011137 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER---ALEFVGRMKDDECEP--NVQTYNILIRYFCDAGEIERG 401 (493)
Q Consensus 327 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a 401 (493)
....+.+-|......|. ++..+-..+..++.+..+... ++.+++.+.+.+ .| .....-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 33444455554444333 455555556666666665444 777777766653 22 334445566777778888888
Q ss_pred HHHHHHHhc
Q 011137 402 LELFEKMGS 410 (493)
Q Consensus 402 ~~~~~~~~~ 410 (493)
.+.++.+.+
T Consensus 94 ~~~~~~lL~ 102 (126)
T 1nzn_A 94 LKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877777
No 237
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.76 E-value=0.44 Score=35.45 Aligned_cols=70 Identities=11% Similarity=0.098 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011137 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484 (493)
Q Consensus 415 p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 484 (493)
|+..+--.+..++++..+.++..+++.++++..+.+-.-....+..+.-++.+.|++++|+++.+.+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4444444444455555444444445555555554321011333334444555555555555555544443
No 238
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.70 E-value=0.92 Score=34.23 Aligned_cols=67 Identities=6% Similarity=0.022 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHH
Q 011137 379 EPNVQTYNILIRYFCDAGE---IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448 (493)
Q Consensus 379 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~ 448 (493)
.|+..+--.+..++.++.+ ..+++.+++++...+..-.......+.-++.+.|++++ |.++.+.+++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~---Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSM---AKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHH---HHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHH---HHHHHHHHHh
Confidence 4455555555555555543 33455555555553211122333334445555666665 6666666655
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.25 E-value=5.4 Score=37.31 Aligned_cols=50 Identities=14% Similarity=0.168 Sum_probs=33.1
Q ss_pred CChHHHHHHHHHHhhC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 117 RDYRTVWTLVHRMKSL-----SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE 166 (493)
Q Consensus 117 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 166 (493)
|+++.|++.+-.+.+. ...-.......++..|...|+++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6777777766555432 2333466777788888888888877776665543
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.83 E-value=6.2 Score=36.89 Aligned_cols=95 Identities=11% Similarity=0.136 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHhhh----CCCCCC--HHH
Q 011137 316 NAMIQVLCKKDSVENAILVFEEMVGK--GYMPN---STTYNVVIRGLCHTGEMERALEFVGRMKD----DECEPN--VQT 384 (493)
Q Consensus 316 ~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~ 384 (493)
..|...|...|++.+|..++..+... |.... ...+...++.|...+++..|..++.++.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34455555666666666666555422 11111 12344455556666666666666665432 111121 123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 385 YNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 385 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
+...+..+...+++.+|-..|.++.+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45555555666666666666655543
No 241
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.62 E-value=2.7e-06 Score=77.77 Aligned_cols=264 Identities=10% Similarity=0.042 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011137 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253 (493)
Q Consensus 174 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 253 (493)
.+|..|..+..+.+++.+|++-|- +. .|+..|..++....+.|.+++-.+++....+..- +...=+.|+-+|+
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyI--kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayA 127 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYI--KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALA 127 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSC--CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHH--hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence 455556666666666655553321 11 2455566666666666666666665544443322 2222334566666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011137 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333 (493)
Q Consensus 254 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 333 (493)
+.++..+..+++ ..|+..-...+.+-|...|.++.|.-+|..+. -|..|...+.+.|++..|.+
T Consensus 128 k~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~AVd 191 (624)
T 3lvg_A 128 KTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVD 191 (624)
T ss_dssp TSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGSSTT
T ss_pred hhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHHHHH
Confidence 666554433332 12344344445555555555555555544322 13344445556666666543
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 011137 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413 (493)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 413 (493)
.-+ + .-++.||..+-.+|...+++..|.-.--.++-. ++ -...++..|...|.+++-+.+++.-... -
T Consensus 192 aAr---K---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-E 259 (624)
T 3lvg_A 192 GAR---K---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL-E 259 (624)
T ss_dssp TTT---T---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-T
T ss_pred HHH---h---cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-C
Confidence 322 2 236789999999999999988776655555432 11 2335778899999999999999988743 2
Q ss_pred CCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011137 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482 (493)
Q Consensus 414 ~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 482 (493)
.....+|+.|.-.|.+. ++++ ..+.++..-. ..-.-.+|++|.+.--|.++.-++....
T Consensus 260 rAHmGmFTELaILYsKY-~PeK---lmEHlklf~s------riNipKviracE~ahLW~ElvfLY~~yd 318 (624)
T 3lvg_A 260 RAHMGMFTELAILYSKF-KPQK---MREHLELFWS------RVNIPKVLRAAEQAHLWAELVFLYDKYE 318 (624)
T ss_dssp TCCHHHHHHHHHHHHSS-CTTH---HHHHHTTSSS------SSCCTTTHHHHTTTTCHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHhc-CHHH---HHHHHHHHHH------hccHHHHHHHHHHHhhHHHHHHHHhcch
Confidence 36888999999988876 3444 3333333222 2222347889999999999887765443
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.95 E-value=0.51 Score=47.12 Aligned_cols=128 Identities=10% Similarity=-0.032 Sum_probs=80.5
Q ss_pred HHHHHHHHHhcCC-hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhC------CCC-CCHH--
Q 011137 106 FDHAIDLAARLRD-YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAG-KADRAVKIFLSMHEH------GCR-QSLN-- 174 (493)
Q Consensus 106 ~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~------~~~-~~~~-- 174 (493)
-..++..+...|+ .+.|..+++++.......+......++..+...+ +--+|.+++.+..+. ..+ .+..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 4455555555666 5789999999988653222222223333332222 223455555444321 111 1111
Q ss_pred --------HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 011137 175 --------SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233 (493)
Q Consensus 175 --------~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 233 (493)
..+.=.+.+...|+++.|+.+-++...-.|.+-.+|..|..+|...|+++.|+-.+.-+
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 12222344667899999999998887777778889999999999999999999888876
No 243
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.79 E-value=6.5 Score=41.99 Aligned_cols=130 Identities=12% Similarity=0.094 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 011137 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS----TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389 (493)
Q Consensus 314 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 389 (493)
-|..++..+.+.+.++.+.++-...++....-+. ..|..+..++...|++++|...+-.+..... -......|+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 3555666666666666666665554433111111 1455666666677777777666666554432 234455555
Q ss_pred HHHHhcCC------------HHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHH
Q 011137 390 RYFCDAGE------------IERGLELFEKMGSG--VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447 (493)
Q Consensus 390 ~~~~~~g~------------~~~a~~~~~~~~~~--~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~ 447 (493)
..+|..|. .++..+++..-.+. .....+.-|..|-.-+..+|++..+ |.-+++.+.
T Consensus 979 ~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~A--A~vmYe~~~ 1048 (1139)
T 4fhn_B 979 NQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDA--AAIIYEKLS 1048 (1139)
T ss_dssp HHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCH--HHHHHHHHH
T ss_pred HHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHH--HHHHHHHHH
Confidence 55554443 33444444322111 0111223456666666778888884 444555544
No 244
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.62 E-value=1.1 Score=31.24 Aligned_cols=45 Identities=13% Similarity=0.119 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011137 121 TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165 (493)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 165 (493)
++.+-+..+-.....|++....+.+++|.+.+++..|+.+|+-++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444444444455555555555555555555555555555544
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.45 E-value=0.6 Score=42.93 Aligned_cols=69 Identities=9% Similarity=0.082 Sum_probs=37.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 011137 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK-----RKCEIDVVTYT 281 (493)
Q Consensus 212 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 281 (493)
.++..+...|++++|...+..+.....- +...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-.
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3445555556666666555555544222 555566666666666666666666555433 25555555443
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.26 E-value=1.2 Score=44.46 Aligned_cols=51 Identities=22% Similarity=0.246 Sum_probs=31.5
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408 (493)
Q Consensus 357 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 408 (493)
|...|+++.|+++-++..... +-+-.+|..|..+|...|+++.|+-.++-+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 445566666666666666542 334566666666666666666666666655
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.18 E-value=0.8 Score=42.10 Aligned_cols=69 Identities=7% Similarity=0.024 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-----CCCCCCHHH
Q 011137 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS-----GVCLPNLDT 419 (493)
Q Consensus 350 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~ 419 (493)
...++.++...|+++++...+..+.... +.+...|..+|.++.+.|+..+|++.|+++.+ .|+.|+..+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3345556666777777777776666553 45666777777777777777777777766543 266666544
No 248
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=90.97 E-value=0.00064 Score=62.53 Aligned_cols=88 Identities=10% Similarity=0.083 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 181 (493)
|+..|..+|.++.+.|.+++.++.+...++..- ++..=+.++-+|++.++..+-.+++. .|+..-...+.+
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHH
Confidence 555677777777777777777776666555432 22333456666777766544333221 244444445566
Q ss_pred HHHccCCHHHHHHHHHH
Q 011137 182 LLCKEKKVEKAYNLFKV 198 (493)
Q Consensus 182 ~~~~~g~~~~A~~~~~~ 198 (493)
-|...|.++.|.-+|..
T Consensus 153 rcf~e~lYeAAKilys~ 169 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNN 169 (624)
T ss_dssp HHHHSCCSTTSSTTGGG
T ss_pred HHHHccCHHHHHHHHHh
Confidence 66666666666555543
No 249
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.87 E-value=3.8 Score=30.43 Aligned_cols=59 Identities=10% Similarity=0.134 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011137 121 TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180 (493)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 180 (493)
+..+-+..+....+.|++......+++|.+.+++..|+.+|+-++.. +.+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 44444444445555566666666666666666666666666555532 122333444444
No 250
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.86 E-value=5.4 Score=29.69 Aligned_cols=47 Identities=4% Similarity=-0.077 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011137 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341 (493)
Q Consensus 295 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 341 (493)
+++.+++++.+.+..-....+-.+.-++.+.|++++|.+..+.+.+.
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 34444444444321112233334444445555555555555544443
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.72 E-value=9.6 Score=40.69 Aligned_cols=147 Identities=10% Similarity=0.019 Sum_probs=100.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC----CC--------------
Q 011137 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD----EC-------------- 378 (493)
Q Consensus 317 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-------------- 378 (493)
.++..+...+..+.+.++...... ++..--.+..+|...|++++|.++|++.... ..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 455556667777766665443322 3444445667788999999999999876321 00
Q ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCC
Q 011137 379 ----EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN----LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450 (493)
Q Consensus 379 ----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g 450 (493)
..-..-|..++..+.+.|.++.+.++-+...+....-+ ...|..+...+...|++++ |...+-.+.+..
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~---Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDA---AHVALMVLSTTP 968 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGG---GGHHHHHHHHSS
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHH---HHHHHHhCCCHH
Confidence 11123477888889999999999888877665321112 2368889999999999999 888888887754
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHH
Q 011137 451 FMPRKFTFNRVLNGLLLIGNQGL 473 (493)
Q Consensus 451 ~~p~~~~~~~l~~~~~~~g~~~~ 473 (493)
. -...+..|+..+|+.|..+.
T Consensus 969 ~--r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 969 L--KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp S--CHHHHHHHHHHHHHHCCHHH
T ss_pred H--HHHHHHHHHHHHHhCCChhh
Confidence 3 46778888888887776554
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.03 E-value=5.2 Score=27.99 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=20.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011137 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479 (493)
Q Consensus 439 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 479 (493)
..+-++.+....+.|+..+..+.+++|.+.+++..|.++++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE 69 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILE 69 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33444444444445555555555555555555555555554
No 253
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=87.08 E-value=24 Score=34.53 Aligned_cols=268 Identities=10% Similarity=0.050 Sum_probs=142.6
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 011137 88 HFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH 167 (493)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 167 (493)
++-..+...++.+.....-+.-+..+.+.+++.....++.. .+.+...-.....+....|+..+|......+-..
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~ 131 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT 131 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Confidence 44445555666555555556667778888888877765433 2345655566677777888887777766666554
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh----c-----------CCCCCcch-HHHHHHHHHhcCChhHHHHHHH
Q 011137 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR----G-----------KFKADVIS-YNVIANGWCLVKRTNKALEVLK 231 (493)
Q Consensus 168 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~----~-----------~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~ 231 (493)
| ......+..++..+.+.|.+.... +..+|. . ..+++... ...++..+. +...+.....
T Consensus 132 ~-~~~p~~c~~l~~~~~~~g~lt~~~-~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~ 206 (618)
T 1qsa_A 132 G-KSQPNACDKLFSVWRASGKQDPLA-YLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFAR 206 (618)
T ss_dssp S-SCCCTHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHH
T ss_pred C-CCCcHHHHHHHHHHHHCCCCCHHH-HHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHh
Confidence 4 334556777777777666543321 111111 1 11111111 111111111 1122221111
Q ss_pred HHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHhccCCHHHHHHHHHHHH
Q 011137 232 EMVDRGLNPNLT---TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT----YTTIVHGFGVVGEIKRARNVFDGMV 304 (493)
Q Consensus 232 ~m~~~g~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~~~ 304 (493)
. +.++.. .+...+.-+.+ .+.+.|...+....+... .+... +..+...+...+...++...+....
T Consensus 207 ~-----~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~ 279 (618)
T 1qsa_A 207 T-----TGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAI 279 (618)
T ss_dssp H-----SCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHH
T ss_pred c-----cCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Confidence 1 112222 11122233333 377888888887765432 23222 2233334444553445555666555
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 011137 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375 (493)
Q Consensus 305 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 375 (493)
... .+.....-.+....+.|+++.|...|..|...... ...-.--+.+++...|+.++|..+|+.+..
T Consensus 280 ~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 280 MRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 432 33333444444555678899998888887654221 333445566677788888888888888874
No 254
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=86.71 E-value=6 Score=29.39 Aligned_cols=63 Identities=16% Similarity=0.302 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 011137 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390 (493)
Q Consensus 327 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 390 (493)
|.-+..+-++.+....+.|++......+++|-+.+|+..|.++++-++.+- .+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 444566666667777777777777777777777777777777777776552 233445555544
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=85.45 E-value=7.6 Score=30.20 Aligned_cols=28 Identities=7% Similarity=0.124 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 383 QTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 383 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
+.--.+..+|.+.|++++|+.+++.+..
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 4444567777788888888887776643
No 256
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=84.43 E-value=9.3 Score=29.71 Aligned_cols=61 Identities=11% Similarity=0.032 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCH-------HHHHHHHHHHHccCCHHHHHHHHHHh
Q 011137 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHG-CRQSL-------NSFNTILDLLCKEKKVEKAYNLFKVF 199 (493)
Q Consensus 139 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~-------~~~~~ll~~~~~~g~~~~A~~~~~~~ 199 (493)
.++..-++.+...|.++.|+-+.+.+.... ..++. .++..+.+++...|++..|...|++.
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 344555666777777777777766654321 12331 24455666777777777777777664
No 257
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.71 E-value=12 Score=28.20 Aligned_cols=21 Identities=10% Similarity=-0.110 Sum_probs=8.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 011137 320 QVLCKKDSVENAILVFEEMVG 340 (493)
Q Consensus 320 ~~~~~~~~~~~a~~~~~~~~~ 340 (493)
-++.+.|++++|.+..+.+.+
T Consensus 85 vg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 85 IGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh
Confidence 334444444444444444433
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.28 E-value=7.6 Score=33.01 Aligned_cols=53 Identities=15% Similarity=0.288 Sum_probs=31.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 011137 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR 200 (493)
Q Consensus 147 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 200 (493)
...+.|+++.+++....-++.. +.|...-..+++.+|-.|+++.|.+-++...
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3445566666666665555543 4555556666666666666666665555443
No 259
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.53 E-value=8.6 Score=26.80 Aligned_cols=77 Identities=9% Similarity=0.046 Sum_probs=47.5
Q ss_pred hChHHHHHHHHHhhcCCCCCCCHHHHHHH--HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011137 81 NHALKALHFFNILSYHPTYAHSPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158 (493)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 158 (493)
+..++|..+-+|+...+ + ...-.+ +..+.+.|++++|..+.+.+. .||...|..+.. .+.|..+++.
T Consensus 21 H~HqEA~tIAdwL~~~~----~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le 89 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKG----E-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALE 89 (116)
T ss_dssp TCHHHHHHHHHHHHHTT----C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHH
T ss_pred hHHHHHHHHHHHHHhCC----c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHH
Confidence 45677888888887654 2 222333 345667777777777665543 466666665544 4566666666
Q ss_pred HHHHHHHhCC
Q 011137 159 KIFLSMHEHG 168 (493)
Q Consensus 159 ~~~~~~~~~~ 168 (493)
..+..+...|
T Consensus 90 ~rL~~la~sg 99 (116)
T 2p58_C 90 SRLNRLARSQ 99 (116)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHhCC
Confidence 6666665554
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.80 E-value=25 Score=32.61 Aligned_cols=98 Identities=7% Similarity=-0.014 Sum_probs=65.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHH--HH
Q 011137 209 SYNVIANGWCLVKRTNKALEVLKEMVDR--GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR---KCEIDVVT--YT 281 (493)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~--~~ 281 (493)
++..+...|.+.|++++|.+.|.++... +..--...+-.+++.+...+++..+...+.++... +..++... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5677888888888888888888888753 22333456777888888888988888888876543 22222211 11
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHC
Q 011137 282 TIVHGFGVVGEIKRARNVFDGMVNG 306 (493)
Q Consensus 282 ~li~~~~~~g~~~~A~~~~~~~~~~ 306 (493)
.-...+...+++..|-..|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1122345668888888888776543
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.53 E-value=24 Score=30.02 Aligned_cols=115 Identities=12% Similarity=0.139 Sum_probs=72.6
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHhccCC
Q 011137 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC--LPNLDTYNILISSMFVRKK 432 (493)
Q Consensus 355 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~li~~~~~~~~ 432 (493)
....+.|++++|+.....-++.. +-|...=..|++.+|-.|++++|.+-++...+... .|-...|..+|.+=
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE----- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA----- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH-----
Confidence 34567888999998888888775 66777788889999999999999888887776421 12233455555421
Q ss_pred cccHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHh
Q 011137 433 SDDLLVAGKLLIEMVDRG-----FMPRKFTFNRVLNGL--LLIGNQGLAKEILRLQSR 483 (493)
Q Consensus 433 ~~~~~~A~~~~~~m~~~g-----~~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~ 483 (493)
..=.+...-+ +.....-...++.++ ...|+.++|.++-+.+.+
T Consensus 79 --------~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 79 --------QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp --------HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --------HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 1111122111 112233444555544 457999999888876654
No 262
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=80.91 E-value=33 Score=31.26 Aligned_cols=225 Identities=9% Similarity=0.059 Sum_probs=97.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCC---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC--CCCCCHHHHHH--
Q 011137 247 IVLKGYFRAGQIEEAWRFFLEMKKR--KCE---IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG--GVLPSVATYNA-- 317 (493)
Q Consensus 247 ~l~~~~~~~g~~~~a~~~~~~~~~~--~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~-- 317 (493)
.++..|...|++.+|.+++..+.+. ... .-...|..-+..|...+++.++...+...... .+.++......
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 3555566666666666655555442 111 11233444455566666666666666655332 12122221111
Q ss_pred --HHHHHH-hcCCHHHHHHHHHHHHhC-C-C-CC---ChhhHHHHHHHHHhcCCHHHHHHHHH-HhhhCCCCCCHHHHHH
Q 011137 318 --MIQVLC-KKDSVENAILVFEEMVGK-G-Y-MP---NSTTYNVVIRGLCHTGEMERALEFVG-RMKDDECEPNVQTYNI 387 (493)
Q Consensus 318 --li~~~~-~~~~~~~a~~~~~~~~~~-~-~-~~---~~~~~~~li~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~ 387 (493)
-...+. ..+++..|...|-+..+. . . .| +...|.. +.+... ++..+.-.++. .....-..|....+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlv-L~aLl~-~~r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYML-LCKIML-GQSDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHHHHT-TCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHH-HHHHHc-CCHHHHHHHhccccccccCCccHHHHHH
Confidence 112234 566777776666554321 0 0 01 1112222 222222 22222222221 1111112355555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011137 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467 (493)
Q Consensus 388 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 467 (493)
++.+| ..+++.+...+++..... +..|......+-..+.. . -...+.++.+ .-...++..+...+.-
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~~~~-l~~D~~l~~h~~~L~~~---I-----r~~~L~~i~~---pYsrIsl~~iA~~l~l 328 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEYKKE-LAEDVIVQAHLGTLYDT---M-----LEQNLCRIIE---PYSRVQVAHVAESIQL 328 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHSTTT-TTTSHHHHHHHHHHHHH---H-----HHHHHHHHHT---TCSEEEHHHHHHHHTC
T ss_pred HHHHH-HhCCHHHHHHHHHHHHHH-HhcChHHHHHHHHHHHH---H-----HHHHHHHHhH---hhceeeHHHHHHHHCc
Confidence 66665 456777766666665432 33454422111110000 0 1122222221 1234455555544432
Q ss_pred cCCHHHHHHHHHHHHhcCCCC
Q 011137 468 IGNQGLAKEILRLQSRCGRLP 488 (493)
Q Consensus 468 ~g~~~~a~~~~~~~~~~g~~~ 488 (493)
..++++..+-.|...|...
T Consensus 329 --s~~evE~~L~~lI~dg~I~ 347 (394)
T 3txn_A 329 --PMPQVEKKLSQMILDKKFS 347 (394)
T ss_dssp --CHHHHHHHHHHHHHTTSSC
T ss_pred --CHHHHHHHHHHHHHCCCee
Confidence 5677777777777776654
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=80.80 E-value=30 Score=30.64 Aligned_cols=111 Identities=12% Similarity=0.058 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----HHHHhCCCCCCHHHHHHHH
Q 011137 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF----LSMHEHGCRQSLNSFNTIL 180 (493)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~~~~~~ll 180 (493)
.|.++..=|.+.+++++|.+++..- ...+.+.|+...|-++- +-..+.+.++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G---------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV---------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4556666677777777777765442 22334445554443333 3444556667766666666
Q ss_pred HHHHccCCHH--------HHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 011137 181 DLLCKEKKVE--------KAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVL 230 (493)
Q Consensus 181 ~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 230 (493)
..+.....-+ +|+.+=........-|......+...|.+.+++.+|...|
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 6665544311 1111111111112224455566666666666666666655
No 264
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=80.49 E-value=34 Score=31.17 Aligned_cols=168 Identities=9% Similarity=0.014 Sum_probs=83.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC--CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHH-
Q 011137 212 VIANGWCLVKRTNKALEVLKEMVDR--GLNP---NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK--CEIDVVTYTTI- 283 (493)
Q Consensus 212 ~l~~~~~~~~~~~~A~~~~~~m~~~--g~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l- 283 (493)
.++..|...|++.+|.+++.++.+. .... -...|..-+..|...+++.++...+....... +.+++.....+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 4667777777777777777776542 1110 12345555667777788888777777665431 22233222211
Q ss_pred ---HHHHh-ccCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCCChhhHHH
Q 011137 284 ---VHGFG-VVGEIKRARNVFDGMVNGGVLPS------VATYNAMIQVLCKKDSVENAILVFE-EMVGKGYMPNSTTYNV 352 (493)
Q Consensus 284 ---i~~~~-~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~ 352 (493)
...+. ..+++..|...|-+..+.-...+ ...|..+.... .++..+...++. .....-..|....+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl--~~~r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM--LGQSDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH--cCCHHHHHHHhccccccccCCccHHHHHH
Confidence 12244 67788887777766543200111 11232222222 222222222221 1111112344455566
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH
Q 011137 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383 (493)
Q Consensus 353 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 383 (493)
++.++ ..+++.+...++...... +..|..
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~~~~-l~~D~~ 290 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEYKKE-LAEDVI 290 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHSTTT-TTTSHH
T ss_pred HHHHH-HhCCHHHHHHHHHHHHHH-HhcChH
Confidence 66654 456777777777665432 344544
No 265
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.02 E-value=30 Score=30.28 Aligned_cols=111 Identities=13% Similarity=0.061 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHhCCCCCCHHHHHHHH
Q 011137 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI----FLSMHEHGCRQSLNSFNTIL 180 (493)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~----~~~~~~~~~~~~~~~~~~ll 180 (493)
.|.++..=|.+.+++++|.+++..- ...+.+.|+...|-++ .+-..+.+.+++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g---------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG---------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3555555566666666666655442 1223344554444332 33344455666666666666
Q ss_pred HHHHccCCHH--------HHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 011137 181 DLLCKEKKVE--------KAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVL 230 (493)
Q Consensus 181 ~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 230 (493)
..+.....-+ .|+.+-........-++.....+...|.+.|++.+|...|
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 5554432111 1111111111111224455566666666666666665544
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=80.00 E-value=32 Score=30.46 Aligned_cols=82 Identities=13% Similarity=0.153 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHH
Q 011137 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459 (493)
Q Consensus 380 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 459 (493)
-|+.....+...|.+.+++.+|...|- . |..+....|..++.-+...+...+ ++.....
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e-----------------~dlfiaR 192 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHT-----------------APLYCAR 192 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGG-----------------HHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCcc-----------------HHHHHHH
Confidence 467777888899999999999988773 2 223334566555544444333222 1222223
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 460 RVLNGLLLIGNQGLAKEILRLQSR 483 (493)
Q Consensus 460 ~l~~~~~~~g~~~~a~~~~~~~~~ 483 (493)
+++ -|.-.|+...|..+++.+.+
T Consensus 193 aVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 193 AVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HHH-HHHHhCCHHHHHHHHHHHHH
Confidence 333 35667788888887765543
No 267
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.86 E-value=8.3 Score=26.85 Aligned_cols=77 Identities=13% Similarity=0.094 Sum_probs=47.7
Q ss_pred hChHHHHHHHHHhhcCCCCCCCHHHHHHH--HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011137 81 NHALKALHFFNILSYHPTYAHSPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158 (493)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 158 (493)
+..++|..+-+|+...+ + ...-.+ +..+.+.|++++|..+.+.+. .||...|..+.. .+.|..+++.
T Consensus 20 H~HqEA~tIAdwL~~~~----~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le 88 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLG----Q-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALD 88 (115)
T ss_dssp TCHHHHHHHHHHHHHTT----C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHhCC----c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHH
Confidence 45677888888887654 2 222333 345667778877776655443 466666665544 4667777777
Q ss_pred HHHHHHHhCC
Q 011137 159 KIFLSMHEHG 168 (493)
Q Consensus 159 ~~~~~~~~~~ 168 (493)
..+..+...|
T Consensus 89 ~rL~~la~sg 98 (115)
T 2uwj_G 89 RRLAGLGGSS 98 (115)
T ss_dssp HHHHHHHTCS
T ss_pred HHHHHHHhCC
Confidence 6666666554
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.55 E-value=17 Score=33.76 Aligned_cols=98 Identities=7% Similarity=-0.062 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH---CCCCCCHHHH--H
Q 011137 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKR--KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN---GGVLPSVATY--N 316 (493)
Q Consensus 244 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~--~ 316 (493)
+...+...|.+.|++++|.+.+.++... +...-...+-.+++.+...+++..+...++++.. .+..++.... .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5677899999999999999999999875 3333466788889999999999999999988754 2322222211 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 011137 317 AMIQVLCKKDSVENAILVFEEMVGK 341 (493)
Q Consensus 317 ~li~~~~~~~~~~~a~~~~~~~~~~ 341 (493)
.-...+...+++..|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1122234578899999888776654
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.63 E-value=22 Score=28.63 Aligned_cols=57 Identities=12% Similarity=-0.078 Sum_probs=41.7
Q ss_pred cCCHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCC
Q 011137 395 AGEIERGLELFEKMGSGVCLP-NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454 (493)
Q Consensus 395 ~g~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~ 454 (493)
.++..++.++|..|..+|+-- -...|......+...|++.+ |.++|+.-++.+-+|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~---A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLE---AKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHcCCccH
Confidence 445678888888887776653 45667777777777888887 7788888887777773
No 270
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=76.33 E-value=39 Score=29.57 Aligned_cols=82 Identities=13% Similarity=0.067 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcc---CCcccHHHHHHHHHHHHHCCCCCCHH
Q 011137 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR---KKSDDLLVAGKLLIEMVDRGFMPRKF 456 (493)
Q Consensus 380 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~---~~~~~~~~A~~~~~~m~~~g~~p~~~ 456 (493)
-++.....+...|.+.|++.+|...|-.-. .-|...+..++.-+... |...+ ++..
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~----~~s~~~~a~~l~~w~~~~~~~~~~e-----------------~dlf 190 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGT----HDSMIKYVDLLWDWLCQVDDIEDST-----------------VAEF 190 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSC----HHHHHHHHHHHHHHHHHTTCCCHHH-----------------HHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CccHHHHHHHHHHHHHhcCCCCcch-----------------HHHH
Confidence 377888888999999999999888774111 11344444444433332 22221 1111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 457 TFNRVLNGLLLIGNQGLAKEILRLQSR 483 (493)
Q Consensus 457 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (493)
...+++ -|.-.|+...|..+++.+.+
T Consensus 191 ~~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 191 FSRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 222222 35567888888888876543
No 271
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=74.86 E-value=19 Score=25.17 Aligned_cols=78 Identities=12% Similarity=-0.034 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 011137 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232 (493)
Q Consensus 153 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 232 (493)
..++|..+-+.+...+. ...+--.-+..+...|++++|..+.+.. ..||...|..|... +.|..+++...+.+
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~---c~pdlepw~ALce~--rlGl~s~le~rL~~ 94 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL---AYPDLEPWLALCEY--RLGLGSALESRLNR 94 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS---CCGGGHHHHHHHHH--HHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC---CCchHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 44555555555544331 1111111223445556666665544332 24555555554433 44555555555555
Q ss_pred HHhCC
Q 011137 233 MVDRG 237 (493)
Q Consensus 233 m~~~g 237 (493)
+..+|
T Consensus 95 la~sg 99 (116)
T 2p58_C 95 LARSQ 99 (116)
T ss_dssp HTTCC
T ss_pred HHhCC
Confidence 55443
No 272
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=74.85 E-value=18 Score=25.18 Aligned_cols=78 Identities=8% Similarity=-0.068 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 011137 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232 (493)
Q Consensus 153 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 232 (493)
..++|..+-+.+...+. ...+--.-+..+...|++++|..+.+.. ..||...|..|... +.|..+++...+.+
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~---c~pdlepw~ALce~--rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN---PWPALEPWFALCEW--HLGLGAALDRRLAG 93 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC---CCGGGHHHHHHHHH--HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC---CCchHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 45555555555544331 1111112223455566666665443322 24555555555433 45555555555555
Q ss_pred HHhCC
Q 011137 233 MVDRG 237 (493)
Q Consensus 233 m~~~g 237 (493)
+..+|
T Consensus 94 la~sg 98 (115)
T 2uwj_G 94 LGGSS 98 (115)
T ss_dssp HHTCS
T ss_pred HHhCC
Confidence 55544
No 273
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=72.91 E-value=8.3 Score=32.96 Aligned_cols=18 Identities=22% Similarity=0.106 Sum_probs=9.3
Q ss_pred HHHHHHhcCChHHHHHHH
Q 011137 109 AIDLAARLRDYRTVWTLV 126 (493)
Q Consensus 109 li~~~~~~~~~~~a~~~~ 126 (493)
.+...++.|+.+.+..++
T Consensus 8 ~L~~A~~~g~~~~v~~Ll 25 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLL 25 (285)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 344455666665444444
No 274
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=71.92 E-value=35 Score=30.60 Aligned_cols=65 Identities=12% Similarity=0.205 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHhhhCCCCCC
Q 011137 316 NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE--MERALEFVGRMKDDECEPN 381 (493)
Q Consensus 316 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~ 381 (493)
..++.-|...|+.++|...++++...... .......+..++-+.++ .+...+++..+...|+-..
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 45666777777888888877777532111 12333344444444332 3456666666666654433
No 275
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=61.87 E-value=51 Score=25.18 Aligned_cols=50 Identities=12% Similarity=0.034 Sum_probs=30.3
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 011137 439 AGKLLIEMVDRGFMPR-KFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLP 488 (493)
Q Consensus 439 A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~ 488 (493)
+..+|..|..+|+--. ...|......+...|++++|.++++.-.+.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5566666666655444 4455555556666666666666666666655444
No 276
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=59.95 E-value=59 Score=25.23 Aligned_cols=51 Identities=12% Similarity=0.062 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCCCC-CHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCC
Q 011137 401 GLELFEKMGSGVCLP-NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR 454 (493)
Q Consensus 401 a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~ 454 (493)
+.++|..|..+|+-- -...|......+...|++.+ |.++|+.-++.+-+|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~---A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRK---ADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHcCCCcH
Confidence 555666666655443 24445555555556666666 6666666666665564
No 277
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=59.54 E-value=90 Score=27.23 Aligned_cols=235 Identities=11% Similarity=0.073 Sum_probs=114.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011137 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE--IKRARNVFDGMVNGGVLPSVATYNAMIQV 321 (493)
Q Consensus 244 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 321 (493)
....++.-|...|+.++|...++++..... .......++......++ -+.+-.++..+.. ++-+.......+...
T Consensus 5 ~~~~ii~EYf~~~d~~Ea~~~l~el~~p~~--~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~l 81 (307)
T 2zu6_B 5 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKL 81 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGGG--GGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCcch--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 346788889999999999999988643321 22233333443333332 3445566666654 333333332222222
Q ss_pred HHhcC----CHHHHHHHH----HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH---HhhhC-----------C--
Q 011137 322 LCKKD----SVENAILVF----EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG---RMKDD-----------E-- 377 (493)
Q Consensus 322 ~~~~~----~~~~a~~~~----~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~---~~~~~-----------~-- 377 (493)
+.... |...|..++ ..+...++-|-.......- +. .-..+.+.+. .+... |
T Consensus 82 l~~ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~----~~-~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~ 156 (307)
T 2zu6_B 82 LKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKG----TV-DCVQARAALDKATVLLSMSKGGKRKDSVWGSG 156 (307)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTT----TC-CCHHHHHHHHHHHHHHHTCC----CCCSSCCC
T ss_pred HHhhhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHh----cc-cchHHHHHHHHHHHHhcccccHhHHhhhcCCC
Confidence 22222 222233333 2333333333222111110 01 1111222222 12210 1
Q ss_pred -CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCC
Q 011137 378 -CEPNVQ----TYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452 (493)
Q Consensus 378 -~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~ 452 (493)
-..+.. ....++.-|...|+.++|.+.++++....+. ...+...+..++-+.++. ..+...+++..+.+.|+-
T Consensus 157 ~~~~~~eelkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~-~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 157 GGQQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGES-TFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp STTSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSH-HHHHHHHHHHHHHHHCSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChH-HHHHHHHHHHHHHHCCCC
Confidence 011222 3467888899999999999999999642111 223344444455443232 223377888888887777
Q ss_pred CCHHHHHHHHHHHHHcCCHH----HHHHH----HHHHHhcCCCC
Q 011137 453 PRKFTFNRVLNGLLLIGNQG----LAKEI----LRLQSRCGRLP 488 (493)
Q Consensus 453 p~~~~~~~l~~~~~~~g~~~----~a~~~----~~~~~~~g~~~ 488 (493)
+.......+.+.+....|.. .|..+ +..+...|..+
T Consensus 235 s~~q~~~Gf~~vl~~l~Dl~lDiP~A~~~la~~v~~ai~~g~l~ 278 (307)
T 2zu6_B 235 TVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIIS 278 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSC
T ss_pred CHHHHHHHHHHHHHhccHhhcccccHHHHHHHHHHHHHHCCCCC
Confidence 66666555555554443332 23333 34555555554
No 278
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=57.41 E-value=79 Score=25.95 Aligned_cols=48 Identities=13% Similarity=0.032 Sum_probs=23.0
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 011137 439 AGKLLIEMVDRGFMPR-KFTFNRVLNGLLLIGNQGLAKEILRLQSRCGR 486 (493)
Q Consensus 439 A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 486 (493)
+..+|..|..+|+--. ...|......+...|++++|.++++.-++.+-
T Consensus 133 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 181 (223)
T 4aez_C 133 PVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA 181 (223)
T ss_dssp HHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 4445555555544333 33444444444555555555555555444443
No 279
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=57.23 E-value=34 Score=28.90 Aligned_cols=246 Identities=11% Similarity=0.011 Sum_probs=106.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHH
Q 011137 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLT---TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV--TYTTIVHG 286 (493)
Q Consensus 212 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~ 286 (493)
..+...++.|+.+.... +.+.|..++.. .-.+.+...+..|+.+-+.. +.+.|..++.. .-.+.+..
T Consensus 7 ~~L~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~g~t~L~~ 78 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQ----LLEGGANVNFQEEEGGWTPLHNAVQMSREDIVEL----LLRHGADPVLRKKNGATPFLL 78 (285)
T ss_dssp HHHHHHHHTTCHHHHHH----HHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHH----HHHTTCCTTCCCTTCCCHHHH
T ss_pred hHHHHHHHcCCHHHHHH----HHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHH----HHHcCCCCcccCCCCCCHHHH
Confidence 34455566777654444 44455444321 11234555566777654444 34445433321 11123333
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh-------------hH
Q 011137 287 FGVVGEIKRARNVFDGMVNGGVLPSV---ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST-------------TY 350 (493)
Q Consensus 287 ~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------~~ 350 (493)
.+..|+.+- ++.+.+.|..++. ..++.+ ...+..|+.+- ++.+.+.|..++.. ..
T Consensus 79 A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~----~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~ 149 (285)
T 1wdy_A 79 AAIAGSVKL----LKLFLSKGADVNECDFYGFTAF-MEAAVYGKVKA----LKFLYKRGANVNLRRKTKEDQERLRKGGA 149 (285)
T ss_dssp HHHHTCHHH----HHHHHHTTCCTTCBCTTCCBHH-HHHHHTTCHHH----HHHHHHTTCCTTCCCCCCHHHHHTTCCCC
T ss_pred HHHcCCHHH----HHHHHHcCCCCCccCcccCCHH-HHHHHhCCHHH----HHHHHHhCCCcccccccHHHHHhhccCCC
Confidence 445566543 4444445544432 122233 33345566543 34444455444321 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHH---HHHHHH
Q 011137 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPN---VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLD---TYNILI 424 (493)
Q Consensus 351 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~---~~~~li 424 (493)
+. +...+..|+.+-+..+++.. |..++ ....+.+..+ +..|+.....++.+.+.+.|..++.. -.+.+.
T Consensus 150 t~-L~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~ 224 (285)
T 1wdy_A 150 TA-LMDAAEKGHVEVLKILLDEM---GADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI 224 (285)
T ss_dssp CH-HHHHHHHTCHHHHHHHHHTS---CCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred cH-HHHHHHcCCHHHHHHHHHhc---CCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence 22 33334556655444444321 22222 2222333333 34455444455666666666554432 222332
Q ss_pred HHHhccCCcccHHHHHHHHHHHHH-CCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccc
Q 011137 425 SSMFVRKKSDDLLVAGKLLIEMVD-RGFMPRKFT--FNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQF 491 (493)
Q Consensus 425 ~~~~~~~~~~~~~~A~~~~~~m~~-~g~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~ 491 (493)
..+..|+. ++++.+.+ .|..++... -.+.+....+.|..+ +.+.+.++|-.++..
T Consensus 225 -~A~~~~~~-------~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~----i~~~Ll~~Ga~~~~~ 282 (285)
T 1wdy_A 225 -LAVEKKHL-------GLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK----IAELLCKRGASTDCG 282 (285)
T ss_dssp -HHHHTTCH-------HHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHHSSCSCCS
T ss_pred -HHHHcCCH-------HHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHH----HHHHHHHcCCCCCcc
Confidence 23333433 34444444 455544221 112233344556554 444555666655443
No 280
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=56.29 E-value=1.1e+02 Score=27.33 Aligned_cols=82 Identities=10% Similarity=0.050 Sum_probs=44.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011137 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464 (493)
Q Consensus 385 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 464 (493)
...++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.++. ......+++..+...|+-+.......+.+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~-~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGES-AFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSH-HHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchH-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 466777777778888888888777542111 122333444444332221 112266777777777766655555555554
Q ss_pred HHHc
Q 011137 465 LLLI 468 (493)
Q Consensus 465 ~~~~ 468 (493)
+...
T Consensus 298 l~~l 301 (358)
T 3eiq_C 298 YNEI 301 (358)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 4443
No 281
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=54.94 E-value=61 Score=23.89 Aligned_cols=21 Identities=14% Similarity=0.349 Sum_probs=8.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 011137 144 IAERYVSAGKADRAVKIFLSM 164 (493)
Q Consensus 144 l~~~~~~~g~~~~a~~~~~~~ 164 (493)
++.-|...|+.++|.+.++++
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHh
Confidence 333344444444444444333
No 282
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=54.91 E-value=1.4e+02 Score=27.86 Aligned_cols=121 Identities=11% Similarity=0.080 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhhChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 011137 70 QLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149 (493)
Q Consensus 70 ~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 149 (493)
.++.-|...+ ++++-|+++-... +++-....|..-.+.+...|++++|.++-....+ |+--+..|.+.+-..=.
T Consensus 333 ~ivpyi~~~l-~n~~lA~~lA~R~----~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~ 406 (494)
T 1bpo_A 333 NIIPYITNVL-QNPDLALRMAVRN----NLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPA 406 (494)
T ss_dssp THHHHHHHTT-CCHHHHHHHHHHT----TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCC
T ss_pred cchhhhhhcc-CCHHHHHHHHHhc----CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCC
Confidence 3344444333 5666666655443 5566777888888899999999999888777654 34456666655444333
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 011137 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK 197 (493)
Q Consensus 150 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 197 (493)
..|+..--+..|..+.+.| ..+..----+++.....|+.+-..+++.
T Consensus 407 ~pgq~splL~YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~ 453 (494)
T 1bpo_A 407 QPGQTSPLLQYFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLK 453 (494)
T ss_dssp CTTSCCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHh
Confidence 4455555666666666655 2333333334555555666655555444
No 283
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=54.44 E-value=91 Score=27.20 Aligned_cols=25 Identities=4% Similarity=0.208 Sum_probs=18.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhh
Q 011137 176 FNTILDLLCKEKKVEKAYNLFKVFR 200 (493)
Q Consensus 176 ~~~ll~~~~~~g~~~~A~~~~~~~~ 200 (493)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4566777888888888888777764
No 284
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.93 E-value=1.5e+02 Score=28.07 Aligned_cols=62 Identities=11% Similarity=0.130 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcc------h-HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011137 173 LNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVI------S-YNVIANGWCLVKRTNKALEVLKEMVDR 236 (493)
Q Consensus 173 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~-~~~l~~~~~~~~~~~~A~~~~~~m~~~ 236 (493)
...+|.++..|...+.++.|..+..+.. +|.+.. . +..+...+.-.+++.+|.+.+....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4578889999999999999999988764 222211 1 234567777889999999999888765
No 285
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=51.65 E-value=70 Score=26.59 Aligned_cols=89 Identities=12% Similarity=0.110 Sum_probs=46.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhC--CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011137 108 HAIDLAARLRDYRTVWTLVHRMKSL--SLGP----TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181 (493)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 181 (493)
--++++...++|++|..++++..+. +.+. ........+..-.....-.-+..+.+.+.. ..+.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 4467888888999998888876542 1211 111222223322223333333334444422 234444555566
Q ss_pred HHHccCCHHHHHHHHHHh
Q 011137 182 LLCKEKKVEKAYNLFKVF 199 (493)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~ 199 (493)
.+.+.|+-++|.++|-+.
T Consensus 100 ~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHH
Confidence 667777777777666443
No 286
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=50.75 E-value=51 Score=28.21 Aligned_cols=18 Identities=17% Similarity=-0.031 Sum_probs=8.1
Q ss_pred HHHhccCCHHHHHHHHHH
Q 011137 285 HGFGVVGEIKRARNVFDG 302 (493)
Q Consensus 285 ~~~~~~g~~~~A~~~~~~ 302 (493)
...+..|+.+-+.-+++.
T Consensus 166 ~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 166 HITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHc
Confidence 333444555444444433
No 287
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=50.53 E-value=98 Score=24.94 Aligned_cols=55 Identities=13% Similarity=0.106 Sum_probs=34.8
Q ss_pred CChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 011137 117 RDYRTVWTLVHRMKSLSLGPT-QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ 171 (493)
Q Consensus 117 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 171 (493)
++...+..+|..|...|+... +..|..-...+...|++.+|.++|+.-++.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 335566777777766665443 3455666666666777777777777766665555
No 288
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=49.58 E-value=53 Score=25.11 Aligned_cols=21 Identities=14% Similarity=0.349 Sum_probs=8.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 011137 144 IAERYVSAGKADRAVKIFLSM 164 (493)
Q Consensus 144 l~~~~~~~g~~~~a~~~~~~~ 164 (493)
++.-|...|+.++|.+.++++
T Consensus 15 lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 15 LLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHh
Confidence 334444444444444444443
No 289
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=49.50 E-value=98 Score=24.68 Aligned_cols=17 Identities=6% Similarity=-0.156 Sum_probs=7.3
Q ss_pred CHHHHHHHHHHHHhcCC
Q 011137 241 NLTTYNIVLKGYFRAGQ 257 (493)
Q Consensus 241 ~~~~~~~l~~~~~~~g~ 257 (493)
+...-...+.++.+.|.
T Consensus 125 ~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 43344444444444444
No 290
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=47.01 E-value=73 Score=25.98 Aligned_cols=85 Identities=12% Similarity=0.000 Sum_probs=37.8
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHc
Q 011137 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQK--TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS--FNTILDLLCK 185 (493)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~ 185 (493)
+...++.|+.+.+..+++.+.+.+..++.. .-...+...+..|+.+-+. .+.+.|..++... -...+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR----LLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHH----HHHHcCCCccccCCCCCCHHHHHHH
Confidence 444566677777766666655554333211 0111233334456554333 3333443322111 1122333445
Q ss_pred cCCHHHHHHHHHH
Q 011137 186 EKKVEKAYNLFKV 198 (493)
Q Consensus 186 ~g~~~~A~~~~~~ 198 (493)
.|+.+-...+++.
T Consensus 89 ~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 89 HRSPTCLRALLDS 101 (241)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHc
Confidence 5666555555544
No 291
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=46.31 E-value=1.2e+02 Score=24.63 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=26.3
Q ss_pred HHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011137 210 YNVIANGWCL---VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256 (493)
Q Consensus 210 ~~~l~~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 256 (493)
+..+|+++.| ..+.+.|+-++-+|++.|-.|.-..-..++.+.-.-|
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3344444433 4667777777777777766655544444444444443
No 292
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=46.15 E-value=86 Score=23.06 Aligned_cols=24 Identities=8% Similarity=0.350 Sum_probs=12.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhh
Q 011137 351 NVVIRGLCHTGEMERALEFVGRMK 374 (493)
Q Consensus 351 ~~li~~~~~~~~~~~a~~~~~~~~ 374 (493)
..++.-|...|+.++|.+.++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 344455555555555555555543
No 293
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=45.12 E-value=35 Score=27.06 Aligned_cols=14 Identities=7% Similarity=0.377 Sum_probs=6.7
Q ss_pred HccCCHHHHHHHHH
Q 011137 184 CKEKKVEKAYNLFK 197 (493)
Q Consensus 184 ~~~g~~~~A~~~~~ 197 (493)
+..|+.+....++.
T Consensus 13 ~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 13 ANQRDTKKVKEILQ 26 (201)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHhccHHHHHHHHH
Confidence 34455555544443
No 294
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=45.02 E-value=48 Score=27.00 Aligned_cols=11 Identities=0% Similarity=0.102 Sum_probs=4.6
Q ss_pred HHccCCHHHHH
Q 011137 183 LCKEKKVEKAY 193 (493)
Q Consensus 183 ~~~~g~~~~A~ 193 (493)
.+..|+.+-+.
T Consensus 49 A~~~~~~~~v~ 59 (240)
T 3eu9_A 49 AAINNRIDLVK 59 (240)
T ss_dssp HHHTTCHHHHH
T ss_pred HHHhCCHHHHH
Confidence 33444444333
No 295
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=44.46 E-value=1.3e+02 Score=26.61 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=16.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 011137 141 FAIIAERYVSAGKADRAVKIFLSMH 165 (493)
Q Consensus 141 ~~~l~~~~~~~g~~~~a~~~~~~~~ 165 (493)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 3456666777777777777666654
No 296
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.13 E-value=2.3e+02 Score=26.84 Aligned_cols=25 Identities=12% Similarity=0.212 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 314 TYNAMIQVLCKKDSVENAILVFEEM 338 (493)
Q Consensus 314 ~~~~li~~~~~~~~~~~a~~~~~~~ 338 (493)
.+|.+++.|...+.++.|..+....
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcC
Confidence 3444555555555555555555444
No 297
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=41.13 E-value=1.3e+02 Score=23.68 Aligned_cols=91 Identities=9% Similarity=-0.027 Sum_probs=38.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 011137 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425 (493)
Q Consensus 346 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 425 (493)
+...-...+.++.+.++.+ +...+..+.. .++..+-...+.++.+.|+. ++...+..+... ++..+-...+.
T Consensus 89 ~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~d---~~~~vr~~A~~ 160 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALKD---EDGWVRQSAAD 160 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTTC---SSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHcC---CCHHHHHHHHH
Confidence 4444444555555555432 2222223322 23444444445555554442 233333333332 34444444444
Q ss_pred HHhccCCcccHHHHHHHHHHHHH
Q 011137 426 SMFVRKKSDDLLVAGKLLIEMVD 448 (493)
Q Consensus 426 ~~~~~~~~~~~~~A~~~~~~m~~ 448 (493)
++...|.. + +...+.++.+
T Consensus 161 aL~~~~~~-~---~~~~L~~~l~ 179 (201)
T 3ltj_A 161 ALGEIGGE-R---VRAAMEKLAE 179 (201)
T ss_dssp HHHHHCSH-H---HHHHHHHHHH
T ss_pred HHHHhCch-h---HHHHHHHHHh
Confidence 44444432 2 4455555443
No 298
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=40.48 E-value=1.2e+02 Score=23.30 Aligned_cols=61 Identities=8% Similarity=-0.001 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC--CHHHHHHHHH-H-----HHHcCCHHHHHHHHHHHHh
Q 011137 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGP--TQKTFAIIAE-R-----YVSAGKADRAVKIFLSMHE 166 (493)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~~~~ 166 (493)
.|...+..+-. |+|-+|.++++..-.....+ ....|..+|. . ..+.|+...|..++.+...
T Consensus 35 ~~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444444444 89999999999987665545 4556667776 2 3457888888888888764
No 299
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=40.16 E-value=47 Score=24.50 Aligned_cols=44 Identities=18% Similarity=0.178 Sum_probs=23.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 011137 109 AIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAG 152 (493)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 152 (493)
+++.+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444444555566666666665555555555555555555544
No 300
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=40.06 E-value=47 Score=26.25 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=7.4
Q ss_pred HHhcCChHHHHHHHH
Q 011137 113 AARLRDYRTVWTLVH 127 (493)
Q Consensus 113 ~~~~~~~~~a~~~~~ 127 (493)
.+..|+.+.+..++.
T Consensus 12 A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 12 AANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHTTCHHHHHHHHT
T ss_pred HHHhccHHHHHHHHH
Confidence 344555555544443
No 301
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=39.87 E-value=2.8e+02 Score=27.25 Aligned_cols=80 Identities=10% Similarity=0.046 Sum_probs=39.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---
Q 011137 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK--- 324 (493)
Q Consensus 248 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 324 (493)
...++.-.|+++.|++++-.. ...+.+++...+..|.-.+- . +.+......-...-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~----~~lls~~~~~~~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---D----SSTRLTKKPKRDIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---C----CcccccCCCcccccHHHHHHHHHHHhh
Confidence 344555678888888877644 23355555555544433332 1 111111000012236667777765
Q ss_pred cCCHHHHHHHHHHH
Q 011137 325 KDSVENAILVFEEM 338 (493)
Q Consensus 325 ~~~~~~a~~~~~~~ 338 (493)
..+..+|.++|--+
T Consensus 369 ~td~~~Al~Y~~li 382 (661)
T 2qx5_A 369 YSDPRVAVEYLVLI 382 (661)
T ss_dssp TTCHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHH
Confidence 56788888877666
No 302
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=39.34 E-value=1.1e+02 Score=26.70 Aligned_cols=102 Identities=8% Similarity=0.010 Sum_probs=45.0
Q ss_pred HHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011137 299 VFDGMVNGGVLPSV---ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP---NSTTYNVVIRGLCHTGEMERALEFVGR 372 (493)
Q Consensus 299 ~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~ 372 (493)
+.+.+.+.|..++. .-.+. +...+..|..+.+..++.. .|..+ |..-.+.|..+ ++.|..+ +.+.
T Consensus 221 i~~lLl~~gad~n~~d~~g~t~-L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~ 291 (337)
T 4g8k_A 221 ITHLLLDHGADVNVRGERGKTP-LILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLA-VELKLKK----IAEL 291 (337)
T ss_dssp HHHHHHHTTCCTTCCCGGGCCH-HHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHH
T ss_pred HHHHHHHCCCCCCCcCCCCCCH-HHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHHH-HHcCCHH----HHHH
Confidence 33344555554432 22222 3344566666655444321 22222 22223334433 3456654 3444
Q ss_pred hhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 011137 373 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416 (493)
Q Consensus 373 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 416 (493)
+++.|..++..+ .+...++.|+.+ +.+.+.+.|-.||
T Consensus 292 Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 292 LCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKED 328 (337)
T ss_dssp HHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC-
T ss_pred HHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCC
Confidence 455665555432 233334556654 3444555565555
No 303
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=39.10 E-value=1.7e+02 Score=24.32 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEM 268 (493)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 268 (493)
+.......+..+.+.|+.++|.++|-+.
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 4444555556666666666666665443
No 304
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=38.94 E-value=56 Score=26.85 Aligned_cols=45 Identities=13% Similarity=0.157 Sum_probs=18.7
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 011137 262 WRFFLEMKKRKCEI-DVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306 (493)
Q Consensus 262 ~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 306 (493)
..+|..|...|+-. -...|......+...|++.+|.++|+.-++.
T Consensus 134 ~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 134 VELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp HHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 34444444443321 2333444444444444444444444444443
No 305
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=38.26 E-value=1.4e+02 Score=23.33 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=26.3
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCC--CC---------------HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011137 216 GWCLVKRTNKALEVLKEMVDRGLN--PN---------------LTTYNIVLKGYFRAGQIEEAWRFFLE 267 (493)
Q Consensus 216 ~~~~~~~~~~A~~~~~~m~~~g~~--p~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~ 267 (493)
+|-+..++..|+..++.+....+. || ..-|+.+...|...|+.++|+..+..
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhh
Confidence 344556666666666666543332 21 22344444555555555555555543
No 306
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=37.45 E-value=44 Score=25.02 Aligned_cols=44 Identities=14% Similarity=0.105 Sum_probs=24.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 011137 109 AIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAG 152 (493)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 152 (493)
+++.+...++.-.|.++++.+.+.+...+..|....+..+...|
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34444444455566666666666555555555555555555555
No 307
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=37.30 E-value=1.4e+02 Score=23.00 Aligned_cols=52 Identities=4% Similarity=-0.075 Sum_probs=33.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 011137 219 LVKRTNKALEVLKEMVDRGLNP--NLTTYNIVLK-G-----YFRAGQIEEAWRFFLEMKK 270 (493)
Q Consensus 219 ~~~~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~~~~ 270 (493)
..|++-+|-+++++.......+ ....|..||. . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3478888888888877664444 4445555555 2 3456777777777777655
No 308
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=36.91 E-value=1.6e+02 Score=23.60 Aligned_cols=17 Identities=6% Similarity=0.321 Sum_probs=7.8
Q ss_pred CCHHHHHHHHHHHHHCC
Q 011137 256 GQIEEAWRFFLEMKKRK 272 (493)
Q Consensus 256 g~~~~a~~~~~~~~~~~ 272 (493)
.+.+.|+-++-+|.+.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 34444444444444444
No 309
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=36.26 E-value=1.4e+02 Score=24.12 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=6.6
Q ss_pred HccCCHHHHHHHHH
Q 011137 184 CKEKKVEKAYNLFK 197 (493)
Q Consensus 184 ~~~g~~~~A~~~~~ 197 (493)
+..|+.+-+..+++
T Consensus 45 ~~~g~~~~v~~Ll~ 58 (232)
T 2rfa_A 45 ALYDNLEAAMVLME 58 (232)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 34455554444444
No 310
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=35.70 E-value=1.4e+02 Score=22.64 Aligned_cols=64 Identities=11% Similarity=0.225 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHhcCCC
Q 011137 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE--IERGLELFEKMGSGVC 413 (493)
Q Consensus 349 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~ 413 (493)
....++.-|...|+.++|.+.++++.... .....+...+..++-+.++ .+.+..++..+...|+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 34556666666777777777777764221 1122333444444444322 3345555555555443
No 311
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=35.56 E-value=1.5e+02 Score=22.65 Aligned_cols=50 Identities=8% Similarity=0.129 Sum_probs=24.1
Q ss_pred HHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 011137 122 VWTLVHRMKSLSLGPT-QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ 171 (493)
Q Consensus 122 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 171 (493)
+.++|..|.+.|+... +..|..-...+...|++++|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455555555544332 2334444444555555555555555555444333
No 312
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=35.51 E-value=1.4e+02 Score=22.58 Aligned_cols=47 Identities=11% Similarity=0.186 Sum_probs=20.3
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011137 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280 (493)
Q Consensus 233 m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 280 (493)
+.+.|.+++. .-..++..+...+..-.|.++++.+.+.+...+..|.
T Consensus 18 l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTV 64 (150)
T 2xig_A 18 IKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSV 64 (150)
T ss_dssp HHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHH
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhH
Confidence 3445554332 2223444444444455555555555554444444333
No 313
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=35.47 E-value=66 Score=24.24 Aligned_cols=42 Identities=7% Similarity=-0.064 Sum_probs=18.9
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 011137 111 DLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAG 152 (493)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 152 (493)
..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 29 ~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 29 EYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 333334444445555555554444444444444444444443
No 314
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=34.93 E-value=1.8e+02 Score=23.41 Aligned_cols=64 Identities=16% Similarity=0.162 Sum_probs=39.8
Q ss_pred HHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCCC
Q 011137 210 YNVIANGWCL---VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ-----IEEAWRFFLEMKKRKCE 274 (493)
Q Consensus 210 ~~~l~~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~ 274 (493)
+..+|+++.| ..+.+.|+-++-+|++.| .|.-..-..++.+.-.-|. ...|...++.....|.+
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3344455443 578999999999999999 7666555566666655553 22344444555555544
No 315
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=34.55 E-value=2.3e+02 Score=29.40 Aligned_cols=49 Identities=8% Similarity=-0.063 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcC
Q 011137 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV----ATYNAMIQVLCKKD 326 (493)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~ 326 (493)
.-|..++..+.+.+-++.+.++-+..++.-..-|. ..|..+.++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 36888999999999999999888888764222233 35666776666544
No 316
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=34.27 E-value=2.6e+02 Score=25.08 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=19.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhh
Q 011137 176 FNTILDLLCKEKKVEKAYNLFKVFR 200 (493)
Q Consensus 176 ~~~ll~~~~~~g~~~~A~~~~~~~~ 200 (493)
...++.=|...|+.++|.+.++++.
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 4567777888888888888887775
No 317
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=33.86 E-value=62 Score=24.01 Aligned_cols=35 Identities=9% Similarity=0.018 Sum_probs=15.5
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 011137 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAG 152 (493)
Q Consensus 118 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 152 (493)
..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34444555555544444444444444444443333
No 318
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=33.85 E-value=1.2e+02 Score=25.79 Aligned_cols=148 Identities=8% Similarity=-0.041 Sum_probs=68.7
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHcc
Q 011137 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL---NSFNTILDLLCKE 186 (493)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~ 186 (493)
+...+..|+.+.+..+++. |..++..--...+...+..|+.+-+..++ +.|..++. .-+ +.+...+..
T Consensus 35 L~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~ga~~~~~d~~g~-t~L~~A~~~ 105 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNA----GALKNLLENEFPLHQAATLEDTKIVKILL----FSGLDDSQFDDKGN-TALYYAVDS 105 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT----TGGGSCCTTCCHHHHHTTSSSCHHHHHHH----HTTCCTTCCCTTSC-CHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCCC-cHHHHHHHc
Confidence 4445566777655555443 32221110122333444566655444333 34433322 112 233445567
Q ss_pred CCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHH
Q 011137 187 KKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT-TYNIVLKGYFRAGQIEEAWRFF 265 (493)
Q Consensus 187 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~ 265 (493)
|+.+-+.-+++.-..-...+..-+.+.+...+..|+.+ +++.+.+.|..+... .-.+.+...+..|..+-+..++
T Consensus 106 g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 181 (285)
T 3kea_A 106 GNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS----IVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLL 181 (285)
T ss_dssp TCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHH----HHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHH
Confidence 77777666665522111223323233444445566654 344444555433111 2234455556778877666666
Q ss_pred HHHHH
Q 011137 266 LEMKK 270 (493)
Q Consensus 266 ~~~~~ 270 (493)
+.-..
T Consensus 182 ~~gad 186 (285)
T 3kea_A 182 DYMTS 186 (285)
T ss_dssp HHHHH
T ss_pred HcCCC
Confidence 55333
No 319
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=33.66 E-value=1.4e+02 Score=22.37 Aligned_cols=54 Identities=11% Similarity=0.105 Sum_probs=24.2
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011137 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287 (493)
Q Consensus 233 m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 287 (493)
+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|..--++.+
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L 66 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVF 66 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHH
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 44455554432 2233344444444455556666655554444444433333333
No 320
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=32.90 E-value=87 Score=24.14 Aligned_cols=44 Identities=7% Similarity=0.163 Sum_probs=19.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCC
Q 011137 145 AERYVSAGKADRAVKIFLSMHEH--GCRQSLNSFNTILDLLCKEKK 188 (493)
Q Consensus 145 ~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~ 188 (493)
+..+...+..-.|.++++.+.+. +...+..|.-.-++.+.+.|-
T Consensus 39 L~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 39 LKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 33344444444555555555443 323333333333444444443
No 321
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=31.80 E-value=70 Score=24.08 Aligned_cols=41 Identities=15% Similarity=0.067 Sum_probs=20.1
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 011137 111 DLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAG 152 (493)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 152 (493)
+.+...+ .-.|.++++.+.+.+...+..|....+..+...|
T Consensus 26 ~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 26 EAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3333334 4455555555555554445555444444444444
No 322
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=30.89 E-value=2e+02 Score=22.77 Aligned_cols=153 Identities=13% Similarity=-0.019 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 181 (493)
+...-...+..+.+.|+.+..-.+.+ +... ++...-...+.++...++.+ +...+..+.. .++..+-...+.
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~-~l~~---~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~ 103 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIK-ALKD---EDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAV 103 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHH-HTTC---SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHH-HHcC---CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 55566666677777776443333333 3332 46666667777777777643 3344444443 356666677777
Q ss_pred HHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011137 182 LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261 (493)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 261 (493)
++.+.|+.+....+.+ +.. .++...-...+.++.+.|..+ +...+..+.+ .++...-...+.++.+.+. .++
T Consensus 104 aL~~~~~~~~~~~L~~-~l~--d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~ 175 (211)
T 3ltm_A 104 ALGQIGDERAVEPLIK-ALK--DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ERV 175 (211)
T ss_dssp HHHHHCCGGGHHHHHH-HTT--CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHH
T ss_pred HHHHhCcHHHHHHHHH-HHh--CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhH
Confidence 7777777544333333 332 245555566666666666543 4444555543 3466666666777777666 344
Q ss_pred HHHHHHHHH
Q 011137 262 WRFFLEMKK 270 (493)
Q Consensus 262 ~~~~~~~~~ 270 (493)
...+..+.+
T Consensus 176 ~~~L~~~l~ 184 (211)
T 3ltm_A 176 RAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444444444
No 323
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=30.32 E-value=2.1e+02 Score=22.90 Aligned_cols=31 Identities=6% Similarity=0.022 Sum_probs=15.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011137 256 GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286 (493)
Q Consensus 256 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 286 (493)
.+.+.|+-++-+|++.|..|.-..-..++-+
T Consensus 21 SDpDAAly~LaRMl~~GEDp~~IaRRLvi~A 51 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDPLYVARRLLAIA 51 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4555555555555555544444333333333
No 324
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.26 E-value=1.8e+02 Score=21.98 Aligned_cols=43 Identities=9% Similarity=0.050 Sum_probs=18.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 011137 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361 (493)
Q Consensus 319 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 361 (493)
+..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 33 L~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 33 VSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3333333344445555555544433334444333444444333
No 325
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=30.03 E-value=56 Score=26.57 Aligned_cols=22 Identities=9% Similarity=-0.088 Sum_probs=9.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhcC
Q 011137 464 GLLLIGNQGLAKEILRLQSRCG 485 (493)
Q Consensus 464 ~~~~~g~~~~a~~~~~~~~~~g 485 (493)
...+.|+.+-+..+++...+.|
T Consensus 216 ~A~~~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 216 LAKQRKNVWMINHLQEARQAKG 237 (240)
T ss_dssp HHHHTTCHHHHHHHHHHC----
T ss_pred HHHHcCcHHHHHHHHHhhhccC
Confidence 3455566666555555444433
No 326
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=29.76 E-value=29 Score=21.45 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011137 295 RARNVFDGMVNGGVLPSVATYNAMIQVL 322 (493)
Q Consensus 295 ~A~~~~~~~~~~~~~~~~~~~~~li~~~ 322 (493)
+|.+.|.+|++..-.++..+|...+...
T Consensus 4 Eae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 4 EAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp HHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 3444444443332222333444444333
No 327
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=29.44 E-value=2.3e+02 Score=22.99 Aligned_cols=63 Identities=11% Similarity=0.182 Sum_probs=38.2
Q ss_pred HHHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-----HHHHHHHHHHHHHCCCC
Q 011137 247 IVLKGYF---RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE-----IKRARNVFDGMVNGGVL 309 (493)
Q Consensus 247 ~l~~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----~~~A~~~~~~~~~~~~~ 309 (493)
-+|+++. +..+.+.|+-++-+|++.|..|.-..-..++-+....|. ...|...++....-|.+
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3455543 446788888888888888877666666666666544443 33444455554444543
No 328
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=29.32 E-value=2.2e+02 Score=22.80 Aligned_cols=45 Identities=11% Similarity=0.074 Sum_probs=30.0
Q ss_pred HHHHHHH---hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011137 212 VIANGWC---LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256 (493)
Q Consensus 212 ~l~~~~~---~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 256 (493)
.+|+++. +..+.+.|+-++-+|++.|-.|.-..-..++.+.-.-|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3444444 35788899999999998887766655555555554444
No 329
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=29.05 E-value=58 Score=28.92 Aligned_cols=25 Identities=8% Similarity=0.115 Sum_probs=17.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhh
Q 011137 176 FNTILDLLCKEKKVEKAYNLFKVFR 200 (493)
Q Consensus 176 ~~~ll~~~~~~g~~~~A~~~~~~~~ 200 (493)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 3556667777777777777776654
No 330
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=29.00 E-value=2.1e+02 Score=22.37 Aligned_cols=28 Identities=7% Similarity=-0.133 Sum_probs=13.8
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 011137 284 VHGFGVVGEIKRARNVFDGMVNGGVLPS 311 (493)
Q Consensus 284 i~~~~~~g~~~~A~~~~~~~~~~~~~~~ 311 (493)
+...+..|+.+.-.++.+.+++.|..++
T Consensus 42 Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 42 LYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 3344445555544555555555554443
No 331
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=28.98 E-value=2e+02 Score=22.23 Aligned_cols=50 Identities=14% Similarity=0.186 Sum_probs=28.5
Q ss_pred HHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 011137 122 VWTLVHRMKSLSLGPT-QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ 171 (493)
Q Consensus 122 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 171 (493)
...+|..|.+.|+... +..|..-...+...|++.+|.++|..-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4455666666555433 3345555555666666666666666666555444
No 332
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=28.66 E-value=1.4e+02 Score=24.10 Aligned_cols=19 Identities=11% Similarity=-0.158 Sum_probs=10.5
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 011137 110 IDLAARLRDYRTVWTLVHR 128 (493)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~ 128 (493)
+...++.|+.+....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4445556666666555554
No 333
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=28.45 E-value=76 Score=23.64 Aligned_cols=15 Identities=7% Similarity=0.282 Sum_probs=6.8
Q ss_pred HHcCCHHHHHHHHHH
Q 011137 149 VSAGKADRAVKIFLS 163 (493)
Q Consensus 149 ~~~g~~~~a~~~~~~ 163 (493)
+..|+.+.+..+++.
T Consensus 10 ~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 10 AARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHTCHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHh
Confidence 334455444444443
No 334
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=28.34 E-value=1.4e+02 Score=22.02 Aligned_cols=21 Identities=5% Similarity=0.066 Sum_probs=9.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCH
Q 011137 257 QIEEAWRFFLEMKKRKCEIDV 277 (493)
Q Consensus 257 ~~~~a~~~~~~~~~~~~~~~~ 277 (493)
..-.|.++++.+.+.+...+.
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~ 53 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGL 53 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCH
T ss_pred CCCCHHHHHHHHHhhCCCCCH
Confidence 334444555444444333333
No 335
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=28.11 E-value=2.3e+02 Score=27.11 Aligned_cols=29 Identities=14% Similarity=0.135 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011137 137 TQKTFAIIAERYVSAGKADRAVKIFLSMH 165 (493)
Q Consensus 137 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 165 (493)
+..-...++..|.+.|-.+.|.++++.+-
T Consensus 515 Tndd~e~vL~iCa~l~L~~~ar~I~k~~g 543 (570)
T 3f3f_C 515 TNDDIEWMLSICVEWRLPEIAKEIYTTLG 543 (570)
T ss_dssp SHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 33444444455555555555555544443
No 336
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.43 E-value=55 Score=19.67 Aligned_cols=37 Identities=24% Similarity=0.227 Sum_probs=24.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHH
Q 011137 441 KLLIEMVDRGFMPRKFTFNRVLNGLLLIGN--QGLAKEILRLQS 482 (493)
Q Consensus 441 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~ 482 (493)
+.++.+++.|+.+.... .++...|. .+.|.+.+.+|.
T Consensus 11 qmlq~L~eMGFd~erae-----~Alk~Tg~~Gle~AmewL~k~~ 49 (54)
T 2cos_A 11 QMLQELVNAGCDQEMAG-----RALKQTGSRSIEAALEYISKMS 49 (54)
T ss_dssp HHHHHHHHHHCCHHHHH-----HHHHHHTSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCHHHHH-----HHHHHhCcccHHHHHHHHHHhc
Confidence 55677777777664333 36666776 888887777653
No 337
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=27.35 E-value=1.2e+02 Score=19.18 Aligned_cols=45 Identities=13% Similarity=0.095 Sum_probs=25.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 011137 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSA 151 (493)
Q Consensus 106 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (493)
++.+++.++...-.+.++..+++....|. .+..+|..-++.+++.
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g~-I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRGT-IPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 45555555555555666666666665553 4555555555555443
No 338
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.02 E-value=70 Score=24.27 Aligned_cols=34 Identities=15% Similarity=0.092 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 011137 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAG 152 (493)
Q Consensus 119 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 152 (493)
.-.|.++++.+.+.+...+..|....+..+...|
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3344444444444443334444443344443333
No 339
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=26.87 E-value=32 Score=28.84 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=8.8
Q ss_pred HHcCCHHHHHHHHHHHHhC
Q 011137 149 VSAGKADRAVKIFLSMHEH 167 (493)
Q Consensus 149 ~~~g~~~~a~~~~~~~~~~ 167 (493)
++.|+.+....+++.+.+.
T Consensus 13 ~~~g~~~~v~~ll~~l~~~ 31 (260)
T 3jxi_A 13 VSRGSPDGLEGLLSFLLTH 31 (260)
T ss_dssp HHHTCGGGGTTHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 3445555544444444433
No 340
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=26.81 E-value=2.9e+02 Score=23.31 Aligned_cols=60 Identities=15% Similarity=0.235 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 011137 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR-AGQIEEAWRFFLEMK 269 (493)
Q Consensus 210 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~ 269 (493)
...+++..-+.++++++.+.++++.+.+...+..--|.+--+|-. .|....+++++..+.
T Consensus 34 lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissie 94 (261)
T 3ubw_A 34 LVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIE 94 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHH
Confidence 334445555566666666666666655555555555544444422 234444555554443
No 341
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=26.69 E-value=1.2e+02 Score=23.27 Aligned_cols=44 Identities=11% Similarity=0.077 Sum_probs=19.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcC
Q 011137 318 MIQVLCKKDSVENAILVFEEMVGK--GYMPNSTTYNVVIRGLCHTG 361 (493)
Q Consensus 318 li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~ 361 (493)
++..+...++.-.|.++++.+.+. +...+..|...-+..+...|
T Consensus 38 IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 38 LLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 334444444444555555555444 33334444333444444444
No 342
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=26.39 E-value=1.9e+02 Score=21.40 Aligned_cols=31 Identities=26% Similarity=0.142 Sum_probs=14.7
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 011137 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469 (493)
Q Consensus 439 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 469 (493)
|.++++.+.+.+...+..|....+..+.+.|
T Consensus 32 a~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 32 AQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 4455555554444444444444444444444
No 343
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=26.02 E-value=1.9e+02 Score=21.78 Aligned_cols=35 Identities=14% Similarity=0.141 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 011137 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361 (493)
Q Consensus 327 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 361 (493)
..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555554444444444444444444444
No 344
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=25.73 E-value=2.3e+02 Score=22.66 Aligned_cols=17 Identities=35% Similarity=0.374 Sum_probs=9.3
Q ss_pred HHHHccCCHHHHHHHHH
Q 011137 181 DLLCKEKKVEKAYNLFK 197 (493)
Q Consensus 181 ~~~~~~g~~~~A~~~~~ 197 (493)
...++.|+.+....+++
T Consensus 8 ~~A~~~g~~~~v~~Ll~ 24 (232)
T 2rfa_A 8 LLAAKENDVQALSKLLK 24 (232)
T ss_dssp HHHHHTTCHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 33455666666555554
No 345
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=25.73 E-value=4.1e+02 Score=24.76 Aligned_cols=83 Identities=10% Similarity=0.045 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011137 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405 (493)
Q Consensus 326 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 405 (493)
.+.+-|.++.. +.|++--...|..-...+...|++++|.++-...... +--+..|.+.+-..=...|...--+.+|
T Consensus 343 ~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~g-iLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 343 QNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKG-ILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp CCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGG-SSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccc-cccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 44444443332 3333333344555556666666666666666555432 2335555544433333344444455555
Q ss_pred HHHhcCC
Q 011137 406 EKMGSGV 412 (493)
Q Consensus 406 ~~~~~~~ 412 (493)
..+.+.|
T Consensus 419 ~~Ll~~g 425 (494)
T 1bpo_A 419 GILLDQG 425 (494)
T ss_dssp HHHHHHS
T ss_pred HHHhccC
Confidence 5555543
No 346
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=25.69 E-value=29 Score=29.09 Aligned_cols=20 Identities=5% Similarity=-0.046 Sum_probs=9.5
Q ss_pred HhcCChhHHHHHHHHHHhCC
Q 011137 218 CLVKRTNKALEVLKEMVDRG 237 (493)
Q Consensus 218 ~~~~~~~~A~~~~~~m~~~g 237 (493)
++.|+.+....+++.+.+.|
T Consensus 13 ~~~g~~~~v~~ll~~l~~~~ 32 (260)
T 3jxi_A 13 VSRGSPDGLEGLLSFLLTHK 32 (260)
T ss_dssp HHHTCGGGGTTHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 34455555545555444433
No 347
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=25.33 E-value=4.1e+02 Score=24.56 Aligned_cols=137 Identities=15% Similarity=0.143 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-C---CCHHHHHHHHHHHHh
Q 011137 257 QIEEAWRFFLEMKKR--------KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV-L---PSVATYNAMIQVLCK 324 (493)
Q Consensus 257 ~~~~a~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~---~~~~~~~~li~~~~~ 324 (493)
..++...+++..... ++..+......++.. ..|+..+++.+++.+..... . ....+..
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e-------- 235 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPE-------- 235 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHH--------
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHH--------
Confidence 456666677666553 233456666666655 46788888887777654311 0 0011111
Q ss_pred cCCHHHHHHHHHHHHhCCC---CCChhhHHHHHHHHH---hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC-
Q 011137 325 KDSVENAILVFEEMVGKGY---MPNSTTYNVVIRGLC---HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE- 397 (493)
Q Consensus 325 ~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 397 (493)
.+++...... ..+...+..+++++. +.++.+.|+.++.+|.+.|..|....-..+..+...-|.
T Consensus 236 ---------~v~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a 306 (447)
T 3pvs_A 236 ---------LLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNA 306 (447)
T ss_dssp ---------HHHHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGG
T ss_pred ---------HHHHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCC
Confidence 1112221110 011122223344433 456788888888888888766654444444455544443
Q ss_pred ----HHHHHHHHHHHhcCC
Q 011137 398 ----IERGLELFEKMGSGV 412 (493)
Q Consensus 398 ----~~~a~~~~~~~~~~~ 412 (493)
..-|...++.....|
T Consensus 307 ~p~a~~~~~~~~~~~~~~g 325 (447)
T 3pvs_A 307 DPRAMQVAIAAWDCFTRVG 325 (447)
T ss_dssp CTHHHHHHHHHHHHHHHSC
T ss_pred ChhHHHHHHHHHHHHHHhC
Confidence 233444444444444
No 348
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=25.03 E-value=2.3e+02 Score=21.68 Aligned_cols=12 Identities=8% Similarity=0.144 Sum_probs=6.8
Q ss_pred HHHHHHHhhCCC
Q 011137 123 WTLVHRMKSLSL 134 (493)
Q Consensus 123 ~~~~~~~~~~~~ 134 (493)
..+-.++.+.|+
T Consensus 85 ~~I~~eL~~KGI 96 (162)
T 3dfg_A 85 LHIRAELGTHGL 96 (162)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 345556666665
No 349
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=24.85 E-value=4.1e+02 Score=24.49 Aligned_cols=54 Identities=13% Similarity=0.120 Sum_probs=30.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-----HHHHHHHHHHHHHCCC
Q 011137 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE-----IKRARNVFDGMVNGGV 308 (493)
Q Consensus 255 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----~~~A~~~~~~~~~~~~ 308 (493)
.++.+.|+.++..|.+.|..|....-..+..+...-|. ...|...++....-|.
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 45667777777777776666555555555555544443 3445555555555554
No 350
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=24.13 E-value=6.2e+02 Score=26.25 Aligned_cols=49 Identities=18% Similarity=0.105 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccC
Q 011137 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV----VTYTTIVHGFGVVG 291 (493)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g 291 (493)
.-|..++..+-+.+.++.+.++-+...+.-..-|. ..|..+.++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 36788999999999999999998888775322233 35667777766544
No 351
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=23.38 E-value=6.3e+02 Score=26.05 Aligned_cols=163 Identities=11% Similarity=-0.006 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011137 246 NIVLKGYFRAGQ---IEEAWRFFLEMKKR--KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320 (493)
Q Consensus 246 ~~l~~~~~~~g~---~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 320 (493)
..++...|+.|. .++|.+.|+..... +....+.....+...-.+.|..++-..+++...+. .+..--..++.
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ll~ 766 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKLRS 766 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHHHH
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC---CCCCCHHHHHHHHHHHHhcCC
Q 011137 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD---ECEPNVQTYNILIRYFCDAGE 397 (493)
Q Consensus 321 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~ 397 (493)
+++...+.....++++.....+..........+..........+.|.+++.+=-+. ........+..++......-.
T Consensus 767 aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~~~ 846 (909)
T 4fke_A 767 ALACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFS 846 (909)
T ss_dssp HHTTCCCHHHHHHHHHHTTCTTTSCGGGHHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTTCC
T ss_pred HhCCCCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcC
Q ss_pred HHHHHHHHHHHhcC
Q 011137 398 IERGLELFEKMGSG 411 (493)
Q Consensus 398 ~~~a~~~~~~~~~~ 411 (493)
-++-.+-+++..+.
T Consensus 847 t~~~~~~~~~f~~~ 860 (909)
T 4fke_A 847 SEFELQQLEQFKKN 860 (909)
T ss_dssp SHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhh
No 352
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=23.34 E-value=2.3e+02 Score=24.51 Aligned_cols=13 Identities=23% Similarity=0.197 Sum_probs=5.5
Q ss_pred HccCCHHHHHHHH
Q 011137 184 CKEKKVEKAYNLF 196 (493)
Q Consensus 184 ~~~g~~~~A~~~~ 196 (493)
+..|+.+-+..++
T Consensus 176 ~~~g~~~~v~~LL 188 (337)
T 4g8k_A 176 AEKGHVEVLKILL 188 (337)
T ss_dssp HHHTCHHHHHHHH
T ss_pred HHCCCHHHHHHHH
Confidence 3445544443333
No 353
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=23.16 E-value=1.4e+02 Score=21.86 Aligned_cols=44 Identities=27% Similarity=0.232 Sum_probs=22.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011137 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256 (493)
Q Consensus 213 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 256 (493)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33444444455556666666665555445555444455554444
No 354
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=22.96 E-value=2.7e+02 Score=21.69 Aligned_cols=80 Identities=14% Similarity=-0.016 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 181 (493)
+...-...+..+.+.++......+.+.+ .. ++...-...+.++...|..+ +...+..+.. .++..+-...+.
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l-~~---~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~ 98 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKAL-KD---EDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAV 98 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHT-TC---SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHH-cC---CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 3344444444455555433333333322 21 34555555555555555432 2233333332 244445455555
Q ss_pred HHHccCCH
Q 011137 182 LLCKEKKV 189 (493)
Q Consensus 182 ~~~~~g~~ 189 (493)
++.+.++.
T Consensus 99 aL~~~~~~ 106 (201)
T 3ltj_A 99 ALGQIGDE 106 (201)
T ss_dssp HHHHHCCG
T ss_pred HHHHhCcH
Confidence 55555543
No 355
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=22.39 E-value=1.7e+02 Score=23.42 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=12.9
Q ss_pred HHHHHccCCHHHHHHHHHHhhcC
Q 011137 180 LDLLCKEKKVEKAYNLFKVFRGK 202 (493)
Q Consensus 180 l~~~~~~g~~~~A~~~~~~~~~~ 202 (493)
+..|.+.|.+++|.++|+++-+.
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHccchHHHHHHHHHHhcC
Confidence 33466666666666666665443
No 356
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=22.23 E-value=5.5e+02 Score=24.98 Aligned_cols=306 Identities=8% Similarity=-0.004 Sum_probs=160.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH--HHHHHHHHHhCCC--------
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADR--AVKIFLSMHEHGC-------- 169 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--a~~~~~~~~~~~~-------- 169 (493)
+.+...-+....+....|+..+|....+.+-..|. ..+..+..++..+.+.|.... ...=++.+...|.
T Consensus 99 p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~ 177 (618)
T 1qsa_A 99 PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLA 177 (618)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 55777788888888899998888887777766553 345566667776666554332 2222233333221
Q ss_pred ---CCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcch---HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 011137 170 ---RQSLN-SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVIS---YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242 (493)
Q Consensus 170 ---~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 242 (493)
+++.. ....++..+.. ...+...... ..++... +...+.-+.+ .+.+.|...+....+.+.. +.
T Consensus 178 ~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~----~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~-~~ 248 (618)
T 1qsa_A 178 GQMPADYQTIASAIISLANN---PNTVLTFART----TGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQL-NE 248 (618)
T ss_dssp HTCCGGGHHHHHHHHHHHHC---GGGHHHHHHH----SCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTC-CH
T ss_pred HhCCHHHHHHHHHHHHHHhC---hHhHHHHHhc----cCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCC-CH
Confidence 11111 11112211111 1111111111 1222221 1122233333 4789999999988754322 33
Q ss_pred HHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011137 243 TTYN----IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318 (493)
Q Consensus 243 ~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 318 (493)
.... .+.......+...++...+....... .+.....-.+....+.|+++.|...|+.|..... ......--+
T Consensus 249 ~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~ 325 (618)
T 1qsa_A 249 DQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQ 325 (618)
T ss_dssp HHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHH
Confidence 3222 22333334453566777777665543 2443444455556678999999999998866322 234444556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC---CHH---HHHHHHHHH
Q 011137 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP---NVQ---TYNILIRYF 392 (493)
Q Consensus 319 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~---~~~~l~~~~ 392 (493)
..++...|+.++|..+|..+... . +|..++. ..+.|..-.. ... .+.+ ... .-..-+..+
T Consensus 326 ~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~lA-a~~Lg~~~~~-----~~~--~~~~~~~~~~~~~~~~~r~~~L 391 (618)
T 1qsa_A 326 ADLLLERGREAEAKEILHQLMQQ----R--GFYPMVA-AQRIGEEYEL-----KID--KAPQNVDSALTQGPEMARVREL 391 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHHH-HHHTTCCCCC-----CCC--CCCSCCCCHHHHSHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHHH-HHHcCCCCCC-----CCC--CCChhHHhhhccChHHHHHHHH
Confidence 77888899999999999998753 2 3333332 2333321000 000 0001 000 111234556
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCccc
Q 011137 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435 (493)
Q Consensus 393 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 435 (493)
...|....|...|..+.+. .+......+.......|..+.
T Consensus 392 ~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~ 431 (618)
T 1qsa_A 392 MYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDL 431 (618)
T ss_dssp HHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHH
Confidence 7789999998888887764 233333333333344454444
No 357
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=22.15 E-value=2.5e+02 Score=20.96 Aligned_cols=31 Identities=23% Similarity=0.087 Sum_probs=16.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 011137 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG 469 (493)
Q Consensus 439 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 469 (493)
|.++++.+.+.+...+..|...-+..+.+.|
T Consensus 36 a~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 36 PDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 5555555555544445555544445544444
No 358
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=22.10 E-value=1.1e+02 Score=20.18 Aligned_cols=36 Identities=8% Similarity=0.026 Sum_probs=26.0
Q ss_pred hcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011137 94 SYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRM 129 (493)
Q Consensus 94 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 129 (493)
.+.|+++|++.+|+-+.+.+-+..-...+..+.+++
T Consensus 27 ~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 27 QRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp TTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred hhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 345889999999999988766665555666655554
No 359
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=21.61 E-value=51 Score=19.36 Aligned_cols=21 Identities=10% Similarity=0.167 Sum_probs=16.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCc
Q 011137 469 GNQGLAKEILRLQSRCGRLPR 489 (493)
Q Consensus 469 g~~~~a~~~~~~~~~~g~~~~ 489 (493)
.|...|.++++.+.+.|-.|.
T Consensus 7 RDv~RaiELle~lq~sgevp~ 27 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGEVNN 27 (53)
T ss_dssp HHHHHHHHHHHHHGGGSSSTH
T ss_pred HHHHHHHHHHHHHHHcCCCCc
Confidence 367778888888888887664
No 360
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=21.21 E-value=2.9e+02 Score=21.43 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=13.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011137 249 LKGYFRAGQIEEAWRFFLEMKKRKCEID 276 (493)
Q Consensus 249 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 276 (493)
+...+..|+.+.-.++.+.+.+.|..++
T Consensus 42 Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 42 LYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 3333444554444455555555554433
No 361
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.67 E-value=1.8e+02 Score=18.83 Aligned_cols=60 Identities=18% Similarity=0.066 Sum_probs=36.3
Q ss_pred HHhcCCCCCCHHHHHHHHHHHhccC-CcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 011137 407 KMGSGVCLPNLDTYNILISSMFVRK-KSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470 (493)
Q Consensus 407 ~~~~~~~~p~~~~~~~li~~~~~~~-~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 470 (493)
.+.+.|+..+..- ..++..+...+ ..-. +.++++.+.+.+...+..|....+..+.+.|-
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s---~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVS---AEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBC---HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCC---HHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3445565555443 33444444443 3444 67788888777666677777777777776664
No 362
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=20.51 E-value=2.4e+02 Score=22.63 Aligned_cols=51 Identities=14% Similarity=0.027 Sum_probs=23.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHccCCHHHHHHHHH
Q 011137 147 RYVSAGKADRAVKIFLSMHEHGCRQSLN--SFNTILDLLCKEKKVEKAYNLFK 197 (493)
Q Consensus 147 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~ 197 (493)
..+..|+.+.+..+++.+.+.+..++.. .....+...+..|+.+-+..+++
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 67 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH
Confidence 3455677766666666555444333211 01122333444566554444433
No 363
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=20.17 E-value=78 Score=19.52 Aligned_cols=16 Identities=38% Similarity=0.578 Sum_probs=8.1
Q ss_pred cCCHHHHHHHHHHHHh
Q 011137 151 AGKADRAVKIFLSMHE 166 (493)
Q Consensus 151 ~g~~~~a~~~~~~~~~ 166 (493)
.|+.+.|+..+-.|..
T Consensus 36 ~gdvd~aI~~LL~m~~ 51 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGE 51 (59)
T ss_dssp TTCHHHHHHHHHHSSC
T ss_pred CCCHHHHHHHHHcCcC
Confidence 4555555555554443
Done!