Query 011139
Match_columns 492
No_of_seqs 277 out of 1777
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 08:33:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011139.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011139hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 2.2E-59 4.8E-64 479.9 44.3 388 24-439 25-430 (431)
2 PTZ00165 aspartyl protease; Pr 100.0 6.2E-58 1.4E-62 471.1 37.8 308 72-439 114-450 (482)
3 cd05490 Cathepsin_D2 Cathepsin 100.0 9.5E-57 2.1E-61 447.9 33.3 302 74-434 2-325 (325)
4 cd05478 pepsin_A Pepsin A, asp 100.0 2.4E-56 5.2E-61 443.3 32.8 300 72-434 4-317 (317)
5 cd05486 Cathespin_E Cathepsin 100.0 1.9E-56 4E-61 443.9 31.0 296 79-434 1-316 (316)
6 KOG1339 Aspartyl protease [Pos 100.0 7E-56 1.5E-60 451.8 35.8 343 69-438 37-397 (398)
7 cd05487 renin_like Renin stimu 100.0 2.6E-55 5.7E-60 437.4 32.9 306 73-435 3-326 (326)
8 cd06096 Plasmepsin_5 Plasmepsi 100.0 2.3E-55 5.1E-60 437.5 32.1 304 77-438 2-326 (326)
9 cd05477 gastricsin Gastricsins 100.0 4.1E-55 8.8E-60 434.9 33.5 297 77-435 2-318 (318)
10 cd05485 Cathepsin_D_like Cathe 100.0 2.9E-55 6.2E-60 437.2 32.2 303 72-434 5-329 (329)
11 cd06098 phytepsin Phytepsin, a 100.0 3E-55 6.6E-60 435.0 32.2 293 72-434 4-317 (317)
12 cd05488 Proteinase_A_fungi Fun 100.0 7.2E-55 1.6E-59 433.1 32.7 298 73-434 5-320 (320)
13 PTZ00147 plasmepsin-1; Provisi 100.0 1E-54 2.2E-59 444.0 34.0 301 73-436 134-450 (453)
14 PTZ00013 plasmepsin 4 (PM4); P 100.0 7.7E-54 1.7E-58 436.6 33.6 301 73-436 133-449 (450)
15 cd05472 cnd41_like Chloroplast 100.0 7.8E-54 1.7E-58 422.1 32.4 290 78-437 1-299 (299)
16 cd05473 beta_secretase_like Be 100.0 1.6E-51 3.5E-56 416.1 34.0 319 78-443 3-353 (364)
17 cd05475 nucellin_like Nucellin 100.0 1.7E-50 3.7E-55 392.5 31.4 261 77-437 1-273 (273)
18 cd06097 Aspergillopepsin_like 100.0 7.8E-51 1.7E-55 396.4 28.4 265 79-434 1-278 (278)
19 cd05489 xylanase_inhibitor_I_l 100.0 8.4E-50 1.8E-54 400.5 33.3 324 85-435 2-361 (362)
20 cd05476 pepsin_A_like_plant Ch 100.0 6.3E-50 1.4E-54 387.2 28.8 254 78-437 1-265 (265)
21 cd05474 SAP_like SAPs, pepsin- 100.0 1.4E-49 3E-54 391.5 29.0 272 78-435 2-295 (295)
22 PF00026 Asp: Eukaryotic aspar 100.0 4.2E-50 9.2E-55 399.1 23.2 298 78-435 1-317 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 1.2E-45 2.7E-50 360.9 29.3 269 79-434 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 2.3E-29 4.9E-34 224.6 16.1 163 79-265 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 2.1E-23 4.6E-28 185.9 14.6 149 282-434 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 9.4E-22 2E-26 163.7 12.7 108 81-226 1-109 (109)
27 cd05483 retropepsin_like_bacte 98.1 1.2E-05 2.5E-10 64.6 6.9 93 78-228 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 96.3 0.018 4E-07 48.3 7.7 30 76-107 9-38 (121)
29 PF13650 Asp_protease_2: Aspar 95.8 0.074 1.6E-06 41.6 8.5 26 81-108 1-26 (90)
30 cd05479 RP_DDI RP_DDI; retrope 93.9 0.2 4.3E-06 42.2 6.7 27 406-432 98-124 (124)
31 cd05479 RP_DDI RP_DDI; retrope 93.6 0.62 1.3E-05 39.2 9.1 30 77-108 15-44 (124)
32 cd05484 retropepsin_like_LTR_2 92.2 0.18 3.9E-06 39.8 3.8 28 79-108 1-28 (91)
33 PF08284 RVP_2: Retroviral asp 90.7 1.8 3.9E-05 37.0 8.6 29 406-434 103-131 (135)
34 PF13975 gag-asp_proteas: gag- 88.7 0.8 1.7E-05 34.4 4.4 33 76-110 6-38 (72)
35 cd06095 RP_RTVL_H_like Retrope 87.1 4.3 9.2E-05 31.5 7.8 25 82-108 2-26 (86)
36 PF00077 RVP: Retroviral aspar 83.7 1.6 3.4E-05 34.9 4.0 27 80-108 7-33 (100)
37 TIGR03698 clan_AA_DTGF clan AA 81.3 2.7 5.7E-05 34.4 4.4 24 407-430 84-107 (107)
38 TIGR02281 clan_AA_DTGA clan AA 78.3 4.1 8.9E-05 34.1 4.8 36 280-331 9-44 (121)
39 COG3577 Predicted aspartyl pro 77.7 19 0.00041 32.8 8.9 73 75-189 102-174 (215)
40 PF13650 Asp_protease_2: Aspar 77.6 3 6.5E-05 32.2 3.6 29 290-331 3-31 (90)
41 cd06094 RP_Saci_like RP_Saci_l 74.5 17 0.00036 28.5 6.7 22 307-328 7-28 (89)
42 PF13975 gag-asp_proteas: gag- 72.9 5.7 0.00012 29.7 3.8 29 290-331 13-41 (72)
43 cd05482 HIV_retropepsin_like R 70.9 5.6 0.00012 31.1 3.5 25 82-108 2-26 (87)
44 cd05484 retropepsin_like_LTR_2 69.8 6.7 0.00015 30.7 3.8 30 289-331 4-33 (91)
45 cd05483 retropepsin_like_bacte 66.5 10 0.00022 29.5 4.3 30 289-331 6-35 (96)
46 PF11925 DUF3443: Protein of u 65.9 40 0.00087 33.7 8.9 58 167-230 83-150 (370)
47 PF12384 Peptidase_A2B: Ty3 tr 65.4 23 0.0005 31.0 6.3 23 310-332 46-68 (177)
48 cd06095 RP_RTVL_H_like Retrope 62.6 9.5 0.00021 29.6 3.3 29 290-331 3-31 (86)
49 PF00077 RVP: Retroviral aspar 51.7 11 0.00025 29.8 2.2 26 289-327 9-34 (100)
50 TIGR03698 clan_AA_DTGF clan AA 51.1 65 0.0014 26.1 6.6 26 81-106 2-32 (107)
51 PF12384 Peptidase_A2B: Ty3 tr 48.9 23 0.0005 31.1 3.6 29 80-108 34-62 (177)
52 COG3577 Predicted aspartyl pro 46.6 37 0.00079 31.0 4.7 35 279-329 102-136 (215)
53 PTZ00382 Variant-specific surf 46.2 13 0.00028 29.7 1.7 30 461-491 61-90 (96)
54 PF09668 Asp_protease: Asparty 43.3 39 0.00085 28.3 4.2 36 77-114 23-58 (124)
55 cd05481 retropepsin_like_LTR_1 41.8 27 0.00058 27.6 2.8 22 311-332 12-33 (93)
56 PF09668 Asp_protease: Asparty 41.0 31 0.00068 28.9 3.2 29 289-330 28-56 (124)
57 PF03302 VSP: Giardia variant- 40.2 18 0.00039 37.1 2.0 34 458-492 359-392 (397)
58 COG5550 Predicted aspartyl pro 38.8 20 0.00043 29.9 1.6 21 312-332 29-50 (125)
59 PF07172 GRP: Glycine rich pro 27.4 51 0.0011 26.2 2.2 12 1-13 1-12 (95)
60 PF08284 RVP_2: Retroviral asp 24.4 1E+02 0.0023 26.1 3.8 29 78-108 21-49 (135)
61 PF02160 Peptidase_A3: Caulifl 23.1 1.6E+02 0.0034 27.0 4.8 28 406-434 90-117 (201)
62 PF10731 Anophelin: Thrombin i 21.4 95 0.0021 22.1 2.4 19 6-24 4-22 (65)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=2.2e-59 Score=479.89 Aligned_cols=388 Identities=28% Similarity=0.469 Sum_probs=297.4
Q ss_pred eeeeeeecCCC-----CC----cccHHHHHHhhHHHHHHHhhcccCCeeeeccCCCCCCccceeEEEEEEeCCCCcEEEE
Q 011139 24 VVLPLERAFPL-----SQ----PVQLSQLRARDRVRHSRILQGVVGGVVEFPVQGSSDPFLIGLYFTKVKLGSPPKEFNV 94 (492)
Q Consensus 24 ~~~pl~~~~~~-----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~i~iGtP~q~~~v 94 (492)
.+++|.++..+ .. ...+++..+|+++|++++.+... .. .++..... ..++.|+++|+||||||++.|
T Consensus 25 ~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~--~~~~~~~~-~~~~~Y~v~i~iGTPpq~~~v 100 (431)
T PLN03146 25 FTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDA-SP--NDPQSDLI-SNGGEYLMNISIGTPPVPILA 100 (431)
T ss_pred eEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhccc-cC--CccccCcc-cCCccEEEEEEcCCCCceEEE
Confidence 78888765321 11 12345566777777766643211 11 12221111 235799999999999999999
Q ss_pred EEecCCCeeEEeCCCCCCCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCCCCCCCCCCCCCCeeeeeeCCCCee
Q 011139 95 QIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQCPSGSNQCSYSFEYGDGSGT 174 (492)
Q Consensus 95 ~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~c~~~~~~~~~~i~Y~~g~~~ 174 (492)
++||||+++||+|.+|..|..+ ..+.|||++|+||+.++|+++.|..... ...|.. ++.|.|.+.|+||+.+
T Consensus 101 i~DTGS~l~Wv~C~~C~~C~~~-----~~~~fdps~SST~~~~~C~s~~C~~~~~--~~~c~~-~~~c~y~i~Ygdgs~~ 172 (431)
T PLN03146 101 IADTGSDLIWTQCKPCDDCYKQ-----VSPLFDPKKSSTYKDVSCDSSQCQALGN--QASCSD-ENTCTYSYSYGDGSFT 172 (431)
T ss_pred EECCCCCcceEcCCCCcccccC-----CCCcccCCCCCCCcccCCCCcccccCCC--CCCCCC-CCCCeeEEEeCCCCce
Confidence 9999999999999999999865 2489999999999999999999975422 234654 3569999999999988
Q ss_pred EEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCChHHHHhhhcCCCCceeEEeecCC
Q 011139 175 SGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDLSVISQLASRGITPRVFSHCLKGQ 254 (492)
Q Consensus 175 ~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~l~~~g~i~~~FS~~l~~~ 254 (492)
.|.+++|+|+|++..+.. ..++++.|||+....+.|. ...+||||||+++.++++||..+ ++++||+||.+.
T Consensus 173 ~G~l~~Dtltlg~~~~~~---~~v~~~~FGc~~~~~g~f~---~~~~GilGLG~~~~Sl~sql~~~--~~~~FSycL~~~ 244 (431)
T PLN03146 173 KGNLAVETLTIGSTSGRP---VSFPGIVFGCGHNNGGTFD---EKGSGIVGLGGGPLSLISQLGSS--IGGKFSYCLVPL 244 (431)
T ss_pred eeEEEEEEEEeccCCCCc---ceeCCEEEeCCCCCCCCcc---CCCceeEecCCCCccHHHHhhHh--hCCcEEEECCCC
Confidence 999999999998643221 2367899999998877542 25799999999999999999753 456999999752
Q ss_pred C---CCcceEEECCCCC---CCeEEeeCCCC--CCcceEEEeEEEEccEEeecCcccccccCCCcEEEecccccccccHH
Q 011139 255 G---NGGGILVLGEILE---PSIVYSPLVPS--KPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEE 326 (492)
Q Consensus 255 ~---~~~G~l~fGg~d~---~~l~~~p~~~~--~~~~~v~l~~i~v~g~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~ 326 (492)
. ...|.|+||+..+ +.+.|+|++.. ..+|.|+|++|+||++.++++...+.......+||||||++++||++
T Consensus 245 ~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~~ 324 (431)
T PLN03146 245 SSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPSD 324 (431)
T ss_pred CCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCHH
Confidence 2 3479999999642 35899999843 46899999999999999887766553233457999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCC-CCCCCCceEEecCCCcccCCeEEEEecCCcEEEecCCceEEEeeeeCCceEEEEEEEecC
Q 011139 327 AFDPFVSAITATVSQSVTP-TMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFEKSP 405 (492)
Q Consensus 327 ~~~~i~~~i~~~~~~~~~~-~~~~~~~~y~v~c~~~~~~p~i~f~f~gg~~~~l~p~~yi~~~~~~~~~~~c~l~i~~~~ 405 (492)
+|+++.+++.+.+...... .......||.... ...+|+|+|+| +|+++.|+|++|+++.. .+..|+++...
T Consensus 325 ~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~--~~~~P~i~~~F-~Ga~~~l~~~~~~~~~~----~~~~Cl~~~~~- 396 (431)
T PLN03146 325 FYSELESAVEEAIGGERVSDPQGLLSLCYSSTS--DIKLPIITAHF-TGADVKLQPLNTFVKVS----EDLVCFAMIPT- 396 (431)
T ss_pred HHHHHHHHHHHHhccccCCCCCCCCCccccCCC--CCCCCeEEEEE-CCCeeecCcceeEEEcC----CCcEEEEEecC-
Confidence 9999999999888643211 1112346776432 24689999999 58999999999998742 23468888765
Q ss_pred CCceeeCceeeecEEEEEECCCCEEEEEeCCCCC
Q 011139 406 GGVSILGDLVLKDKIFVYDLARQRVGWANYDCSL 439 (492)
Q Consensus 406 ~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~c~~ 439 (492)
...||||+.|||++|+|||++++|||||+.+|++
T Consensus 397 ~~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~ 430 (431)
T PLN03146 397 SSIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTK 430 (431)
T ss_pred CCceEECeeeEeeEEEEEECCCCEEeeecCCcCc
Confidence 4579999999999999999999999999999974
No 2
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=6.2e-58 Score=471.11 Aligned_cols=308 Identities=21% Similarity=0.384 Sum_probs=256.9
Q ss_pred CCccceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCCC--CCCCCCCCcCCCCccCCCCCcCceecCCCccccCccC
Q 011139 72 DPFLIGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSN--CPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQ 149 (492)
Q Consensus 72 ~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~--C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~ 149 (492)
.+|.+.+|+++|+||||||+|.|++||||+++||+|..|.. |..+ +.|||++|+||+.+.+.
T Consensus 114 ~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~-------~~yd~s~SSTy~~~~~~--------- 177 (482)
T PTZ00165 114 LNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPH-------RKFDPKKSSTYTKLKLG--------- 177 (482)
T ss_pred ccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCccccccc-------CCCCccccCCcEecCCC---------
Confidence 56788999999999999999999999999999999999975 6655 89999999999764211
Q ss_pred CCCCCCCCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCC
Q 011139 150 TTATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQG 229 (492)
Q Consensus 150 ~~~~~c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~ 229 (492)
.....+.++|++|+ +.|.+++|+|++++.. ++++.||+++.+++.. +....+|||||||++
T Consensus 178 ---------~~~~~~~i~YGsGs-~~G~l~~DtV~ig~l~--------i~~q~FG~a~~~s~~~-f~~~~~DGILGLg~~ 238 (482)
T PTZ00165 178 ---------DESAETYIQYGTGE-CVLALGKDTVKIGGLK--------VKHQSIGLAIEESLHP-FADLPFDGLVGLGFP 238 (482)
T ss_pred ---------CccceEEEEeCCCc-EEEEEEEEEEEECCEE--------EccEEEEEEEeccccc-cccccccceeecCCC
Confidence 01125779999998 6899999999998754 7789999999876531 234578999999997
Q ss_pred CC---------hHHHHhhhcCCCC-ceeEEeecCCCCCcceEEECCCCC------CCeEEeeCCCCCCcceEEEeEEEEc
Q 011139 230 DL---------SVISQLASRGITP-RVFSHCLKGQGNGGGILVLGEILE------PSIVYSPLVPSKPHYNLNLHGITVN 293 (492)
Q Consensus 230 ~~---------s~~~~l~~~g~i~-~~FS~~l~~~~~~~G~l~fGg~d~------~~l~~~p~~~~~~~~~v~l~~i~v~ 293 (492)
.. +++++|++||+++ ++||+||+++...+|+|+|||+|+ +++.|+|+. ...+|+|++++|+|+
T Consensus 239 ~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~-~~~yW~i~l~~i~vg 317 (482)
T PTZ00165 239 DKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVI-STDYWEIEVVDILID 317 (482)
T ss_pred cccccccCCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEcc-ccceEEEEeCeEEEC
Confidence 64 4789999999996 899999987666689999999983 479999997 578999999999999
Q ss_pred cEEeecCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEEEecC
Q 011139 294 GQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEG 373 (492)
Q Consensus 294 g~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f~f~g 373 (492)
++.+... .....+|+||||+++++|+++++++.++++.. .+|+..+.+|+|+|+| +
T Consensus 318 g~~~~~~------~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~-----------------~~C~~~~~lP~itf~f-~ 373 (482)
T PTZ00165 318 GKSLGFC------DRKCKAAIDTGSSLITGPSSVINPLLEKIPLE-----------------EDCSNKDSLPRISFVL-E 373 (482)
T ss_pred CEEeeec------CCceEEEEcCCCccEeCCHHHHHHHHHHcCCc-----------------ccccccccCCceEEEE-C
Confidence 9876542 23567999999999999999999998887542 2687777899999999 4
Q ss_pred Cc-----EEEecCCceEEEee-eeCCceEEEEEEEecC-----CCceeeCceeeecEEEEEECCCCEEEEEeCCCCC
Q 011139 374 GA-----SMVLKPEEYLIHLG-FYDGAAMWCIGFEKSP-----GGVSILGDLVLKDKIFVYDLARQRVGWANYDCSL 439 (492)
Q Consensus 374 g~-----~~~l~p~~yi~~~~-~~~~~~~c~l~i~~~~-----~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~c~~ 439 (492)
|. ++.++|++|+++.. ...++..|.++++..+ ++.||||++|||++|+|||++++|||||+++|..
T Consensus 374 g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~ 450 (482)
T PTZ00165 374 DVNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHDQ 450 (482)
T ss_pred CCCCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccCC
Confidence 43 89999999999742 1234567889998754 3579999999999999999999999999999875
No 3
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=9.5e-57 Score=447.90 Aligned_cols=302 Identities=28% Similarity=0.465 Sum_probs=252.1
Q ss_pred ccceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCCC----CCCCCCCCcCCCCccCCCCCcCceecCCCccccCccC
Q 011139 74 FLIGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSN----CPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQ 149 (492)
Q Consensus 74 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~----C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~ 149 (492)
|.+.+|+++|+||||+|+|.|++||||+++||+|..|.. |..+ +.|+|++|+|++.
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~-------~~y~~~~SsT~~~------------- 61 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLH-------HKYNSSKSSTYVK------------- 61 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCc-------CcCCcccCcceee-------------
Confidence 456899999999999999999999999999999998873 5544 7999999999952
Q ss_pred CCCCCCCCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCC
Q 011139 150 TTATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQG 229 (492)
Q Consensus 150 ~~~~~c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~ 229 (492)
.++.|.+.|++|+ +.|.+++|+|+|++.. +.++.|||++.+++.. +.....+||||||++
T Consensus 62 ----------~~~~~~i~Yg~G~-~~G~~~~D~v~~g~~~--------~~~~~Fg~~~~~~~~~-~~~~~~dGilGLg~~ 121 (325)
T cd05490 62 ----------NGTEFAIQYGSGS-LSGYLSQDTVSIGGLQ--------VEGQLFGEAVKQPGIT-FIAAKFDGILGMAYP 121 (325)
T ss_pred ----------CCcEEEEEECCcE-EEEEEeeeEEEECCEE--------EcCEEEEEEeeccCCc-ccceeeeEEEecCCc
Confidence 3579999999998 7999999999998754 6789999998876531 123467999999997
Q ss_pred CCh------HHHHhhhcCCCC-ceeEEeecCCC--CCcceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEccEE
Q 011139 230 DLS------VISQLASRGITP-RVFSHCLKGQG--NGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQL 296 (492)
Q Consensus 230 ~~s------~~~~l~~~g~i~-~~FS~~l~~~~--~~~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~g~~ 296 (492)
..+ ++++|++||+|+ ++||+||+++. ..+|+|+|||+|+ +++.|+|+. .+.+|.|++++|+|+++.
T Consensus 122 ~~s~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~-~~~~w~v~l~~i~vg~~~ 200 (325)
T cd05490 122 RISVDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVT-RKAYWQIHMDQVDVGSGL 200 (325)
T ss_pred cccccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcC-cceEEEEEeeEEEECCee
Confidence 543 788999999996 89999998642 2479999999994 789999997 568999999999998764
Q ss_pred eecCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEEEecCCcE
Q 011139 297 LSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGAS 376 (492)
Q Consensus 297 ~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg~~ 376 (492)
.. ......+||||||+++++|++++++|.+++++. ....+.|.++|+....+|+|+|+| +|+.
T Consensus 201 ~~-------~~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~---------~~~~~~~~~~C~~~~~~P~i~f~f-gg~~ 263 (325)
T cd05490 201 TL-------CKGGCEAIVDTGTSLITGPVEEVRALQKAIGAV---------PLIQGEYMIDCEKIPTLPVISFSL-GGKV 263 (325)
T ss_pred ee-------cCCCCEEEECCCCccccCCHHHHHHHHHHhCCc---------cccCCCEEecccccccCCCEEEEE-CCEE
Confidence 31 123467999999999999999999999988643 122356899999878899999999 7899
Q ss_pred EEecCCceEEEeeeeCCceEEEEEEEecC-----CCceeeCceeeecEEEEEECCCCEEEEEe
Q 011139 377 MVLKPEEYLIHLGFYDGAAMWCIGFEKSP-----GGVSILGDLVLKDKIFVYDLARQRVGWAN 434 (492)
Q Consensus 377 ~~l~p~~yi~~~~~~~~~~~c~l~i~~~~-----~~~~iLG~~fl~~~y~vfD~~~~~igfa~ 434 (492)
+.|+|++|+++... .+...|.++|+..+ ...||||++|||++|+|||++++|||||+
T Consensus 264 ~~l~~~~y~~~~~~-~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 264 YPLTGEDYILKVSQ-RGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred EEEChHHeEEeccC-CCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 99999999997532 23456888887642 45799999999999999999999999995
No 4
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=2.4e-56 Score=443.28 Aligned_cols=300 Identities=29% Similarity=0.511 Sum_probs=257.7
Q ss_pred CCccceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCCC--CCCCCCCCcCCCCccCCCCCcCceecCCCccccCccC
Q 011139 72 DPFLIGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSN--CPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQ 149 (492)
Q Consensus 72 ~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~--C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~ 149 (492)
+++.+..|+++|+||||+|++.|+|||||+++||+|..|.. |..+ +.|+|++|+|++.
T Consensus 4 ~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~~-------~~f~~~~Sst~~~------------- 63 (317)
T cd05478 4 TNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSNH-------NRFNPRQSSTYQS------------- 63 (317)
T ss_pred ccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCccccccc-------CcCCCCCCcceee-------------
Confidence 34567899999999999999999999999999999999975 5544 8999999999963
Q ss_pred CCCCCCCCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCC
Q 011139 150 TTATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQG 229 (492)
Q Consensus 150 ~~~~~c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~ 229 (492)
..+.|++.|++|+ +.|.+++|+|++++.. +.++.|||+....+.+. .....+||||||++
T Consensus 64 ----------~~~~~~~~yg~gs-~~G~~~~D~v~ig~~~--------i~~~~fg~~~~~~~~~~-~~~~~dGilGLg~~ 123 (317)
T cd05478 64 ----------TGQPLSIQYGTGS-MTGILGYDTVQVGGIS--------DTNQIFGLSETEPGSFF-YYAPFDGILGLAYP 123 (317)
T ss_pred ----------CCcEEEEEECCce-EEEEEeeeEEEECCEE--------ECCEEEEEEEecCcccc-ccccccceeeeccc
Confidence 3578999999999 7999999999998754 67899999987766532 22357999999987
Q ss_pred CC------hHHHHhhhcCCCC-ceeEEeecCCCCCcceEEECCCC----CCCeEEeeCCCCCCcceEEEeEEEEccEEee
Q 011139 230 DL------SVISQLASRGITP-RVFSHCLKGQGNGGGILVLGEIL----EPSIVYSPLVPSKPHYNLNLHGITVNGQLLS 298 (492)
Q Consensus 230 ~~------s~~~~l~~~g~i~-~~FS~~l~~~~~~~G~l~fGg~d----~~~l~~~p~~~~~~~~~v~l~~i~v~g~~~~ 298 (492)
.. +++++|++||+|+ ++||+||.+++..+|+|+|||+| ++++.|+|+. ...+|.|++++|+|+|+.+.
T Consensus 124 ~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~-~~~~w~v~l~~v~v~g~~~~ 202 (317)
T cd05478 124 SIASSGATPVFDNMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVT-AETYWQITVDSVTINGQVVA 202 (317)
T ss_pred hhcccCCCCHHHHHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECC-CCcEEEEEeeEEEECCEEEc
Confidence 54 4889999999996 89999999876567999999998 4789999997 57899999999999999874
Q ss_pred cCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEEEecCCcEEE
Q 011139 299 IDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMV 378 (492)
Q Consensus 299 ~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg~~~~ 378 (492)
. ..+..++|||||+++++|++++++|.+++.+.. ...++|.++|+....+|+|+|+| +|+++.
T Consensus 203 ~-------~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~---------~~~~~~~~~C~~~~~~P~~~f~f-~g~~~~ 265 (317)
T cd05478 203 C-------SGGCQAIVDTGTSLLVGPSSDIANIQSDIGASQ---------NQNGEMVVNCSSISSMPDVVFTI-NGVQYP 265 (317)
T ss_pred c-------CCCCEEEECCCchhhhCCHHHHHHHHHHhCCcc---------ccCCcEEeCCcCcccCCcEEEEE-CCEEEE
Confidence 2 234579999999999999999999999886542 23467999999878899999999 789999
Q ss_pred ecCCceEEEeeeeCCceEEEEEEEecC-CCceeeCceeeecEEEEEECCCCEEEEEe
Q 011139 379 LKPEEYLIHLGFYDGAAMWCIGFEKSP-GGVSILGDLVLKDKIFVYDLARQRVGWAN 434 (492)
Q Consensus 379 l~p~~yi~~~~~~~~~~~c~l~i~~~~-~~~~iLG~~fl~~~y~vfD~~~~~igfa~ 434 (492)
|||++|+.+. ...|.++|+..+ ...||||++|||++|+|||++++|||||+
T Consensus 266 i~~~~y~~~~-----~~~C~~~~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 266 LPPSAYILQD-----QGSCTSGFQSMGLGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred ECHHHheecC-----CCEEeEEEEeCCCCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 9999999863 456888998865 46799999999999999999999999996
No 5
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.9e-56 Score=443.89 Aligned_cols=296 Identities=30% Similarity=0.503 Sum_probs=250.6
Q ss_pred EEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCC--CCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCCCCCCCC
Q 011139 79 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCS--NCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQCP 156 (492)
Q Consensus 79 Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~--~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~c~ 156 (492)
|+++|+||||+|+++|+|||||+++||+|..|. .|..+ +.|+|++|+|++
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~~-------~~y~~~~SsT~~--------------------- 52 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTKH-------NRFQPSESSTYV--------------------- 52 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCcc-------ceECCCCCcccc---------------------
Confidence 899999999999999999999999999999997 47665 889999999995
Q ss_pred CCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCCh----
Q 011139 157 SGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDLS---- 232 (492)
Q Consensus 157 ~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s---- 232 (492)
...+.|++.|++|+ +.|.+++|+|+|++.. +.++.|||+..+.+... .....+||||||++..+
T Consensus 53 --~~~~~~~i~Yg~g~-~~G~~~~D~v~ig~~~--------~~~~~fg~~~~~~~~~~-~~~~~dGilGLg~~~~s~~~~ 120 (316)
T cd05486 53 --SNGEAFSIQYGTGS-LTGIIGIDQVTVEGIT--------VQNQQFAESVSEPGSTF-QDSEFDGILGLAYPSLAVDGV 120 (316)
T ss_pred --cCCcEEEEEeCCcE-EEEEeeecEEEECCEE--------EcCEEEEEeeccCcccc-cccccceEeccCchhhccCCC
Confidence 34689999999998 7999999999998654 67899999887765321 23467999999997654
Q ss_pred --HHHHhhhcCCCC-ceeEEeecCCC--CCcceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEccEEeecCccc
Q 011139 233 --VISQLASRGITP-RVFSHCLKGQG--NGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSA 303 (492)
Q Consensus 233 --~~~~l~~~g~i~-~~FS~~l~~~~--~~~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~g~~~~~~~~~ 303 (492)
++++|++||+|+ ++||+||+++. ..+|+|+|||+|+ +++.|+|+. ...+|.|++++|+|+++.+..
T Consensus 121 ~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~-~~~~w~v~l~~i~v~g~~~~~---- 195 (316)
T cd05486 121 TPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVT-VQGYWQIQLDNIQVGGTVIFC---- 195 (316)
T ss_pred CCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECC-CceEEEEEeeEEEEecceEec----
Confidence 689999999996 79999998642 3479999999994 789999997 578999999999999987632
Q ss_pred ccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEEEecCCcEEEecCCc
Q 011139 304 FAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVLKPEE 383 (492)
Q Consensus 304 ~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg~~~~l~p~~ 383 (492)
.....++|||||+++++|+++++++.+++.+. ..+++|.++|+..+.+|+|+|+| +|+.++|+|++
T Consensus 196 ---~~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~----------~~~~~~~~~C~~~~~~p~i~f~f-~g~~~~l~~~~ 261 (316)
T cd05486 196 ---SDGCQAIVDTGTSLITGPSGDIKQLQNYIGAT----------ATDGEYGVDCSTLSLMPSVTFTI-NGIPYSLSPQA 261 (316)
T ss_pred ---CCCCEEEECCCcchhhcCHHHHHHHHHHhCCc----------ccCCcEEEeccccccCCCEEEEE-CCEEEEeCHHH
Confidence 23467999999999999999999998877543 12356999999778899999999 78999999999
Q ss_pred eEEEeeeeCCceEEEEEEEecC-----CCceeeCceeeecEEEEEECCCCEEEEEe
Q 011139 384 YLIHLGFYDGAAMWCIGFEKSP-----GGVSILGDLVLKDKIFVYDLARQRVGWAN 434 (492)
Q Consensus 384 yi~~~~~~~~~~~c~l~i~~~~-----~~~~iLG~~fl~~~y~vfD~~~~~igfa~ 434 (492)
|++.... ++...|.++|+..+ .+.||||++|||++|+|||++++|||||+
T Consensus 262 y~~~~~~-~~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 262 YTLEDQS-DGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred eEEeccc-CCCCEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 9987422 34567888887653 35799999999999999999999999996
No 6
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-56 Score=451.81 Aligned_cols=343 Identities=38% Similarity=0.690 Sum_probs=282.0
Q ss_pred CCCCCccceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCC-CCCCCCCCCcCCCCccCCCCCcCceecCCCccccCc
Q 011139 69 GSSDPFLIGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCS-NCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASE 147 (492)
Q Consensus 69 ~~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~-~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~ 147 (492)
.....+.+++|+++|+||||||+|.|++||||+++||+|..|. .|..+. .+.|+|++|+|++.+.|+++.|...
T Consensus 37 ~~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~-----~~~f~p~~SSt~~~~~c~~~~c~~~ 111 (398)
T KOG1339|consen 37 ESLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQH-----NPIFDPSASSTYKSVGCSSPRCKSL 111 (398)
T ss_pred cccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccC-----CCccCccccccccccCCCCcccccc
Confidence 3345566789999999999999999999999999999999999 798641 2459999999999999999999976
Q ss_pred cCCCCCCCCCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecC
Q 011139 148 IQTTATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFG 227 (492)
Q Consensus 148 ~~~~~~~c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg 227 (492)
.+. |. .+..|.|.+.|+||+.+.|++++|+|++++.+ ....+++.|||+..+.+.+... .+++||||||
T Consensus 112 ~~~----~~-~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~-----~~~~~~~~FGc~~~~~g~~~~~-~~~dGIlGLg 180 (398)
T KOG1339|consen 112 PQS----CS-PNSSCPYSIQYGDGSSTSGYLATDTVTFGGTT-----SLPVPNQTFGCGTNNPGSFGLF-AAFDGILGLG 180 (398)
T ss_pred ccC----cc-cCCcCceEEEeCCCCceeEEEEEEEEEEcccc-----ccccccEEEEeeecCccccccc-cccceEeecC
Confidence 544 44 36889999999998789999999999999743 1226679999999998762222 5789999999
Q ss_pred CCCChHHHHhhhcCCCCceeEEeecCCCC---CcceEEECCCCC----CCeEEeeCCCCCC-cceEEEeEEEEccEEeec
Q 011139 228 QGDLSVISQLASRGITPRVFSHCLKGQGN---GGGILVLGEILE----PSIVYSPLVPSKP-HYNLNLHGITVNGQLLSI 299 (492)
Q Consensus 228 ~~~~s~~~~l~~~g~i~~~FS~~l~~~~~---~~G~l~fGg~d~----~~l~~~p~~~~~~-~~~v~l~~i~v~g~~~~~ 299 (492)
++.++++.|+...+...++||+||.+.+. .+|.|+||++|. +.+.|+|++.... +|+|++.+|.|+++. .+
T Consensus 181 ~~~~S~~~q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~-~~ 259 (398)
T KOG1339|consen 181 RGSLSVPSQLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKR-PI 259 (398)
T ss_pred CCCccceeecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCcc-CC
Confidence 99999999999887766799999998753 489999999994 5789999995444 999999999999977 65
Q ss_pred CcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCccc----CCeEEEEecCCc
Q 011139 300 DPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEI----FPQVSLNFEGGA 375 (492)
Q Consensus 300 ~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~----~p~i~f~f~gg~ 375 (492)
....+... ..++|+||||++++||+++|++|.+++.+.+.. ......|.+.|..... +|+|+|+|.+|+
T Consensus 260 ~~~~~~~~-~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~------~~~~~~~~~~C~~~~~~~~~~P~i~~~f~~g~ 332 (398)
T KOG1339|consen 260 GSSLFCTD-GGGAIIDSGTSLTYLPTSAYNALREAIGAEVSV------VGTDGEYFVPCFSISTSGVKLPDITFHFGGGA 332 (398)
T ss_pred CcceEecC-CCCEEEECCcceeeccHHHHHHHHHHHHhheec------cccCCceeeecccCCCCcccCCcEEEEECCCc
Confidence 55555422 688999999999999999999999999997410 2233456667775555 999999996589
Q ss_pred EEEecCCceEEEeeeeCCceEEEEEEEecC-C-CceeeCceeeecEEEEEECC-CCEEEEEe--CCCC
Q 011139 376 SMVLKPEEYLIHLGFYDGAAMWCIGFEKSP-G-GVSILGDLVLKDKIFVYDLA-RQRVGWAN--YDCS 438 (492)
Q Consensus 376 ~~~l~p~~yi~~~~~~~~~~~c~l~i~~~~-~-~~~iLG~~fl~~~y~vfD~~-~~~igfa~--~~c~ 438 (492)
.+.+++++|+++..... .+|+++.... . ..||||+.|||+++++||.. ++|||||+ .+|+
T Consensus 333 ~~~l~~~~y~~~~~~~~---~~Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 333 VFSLPPKNYLVEVSDGG---GVCLAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred EEEeCccceEEEECCCC---CceeeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 99999999999864311 1166554443 3 48999999999999999999 99999999 6665
No 7
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=2.6e-55 Score=437.38 Aligned_cols=306 Identities=24% Similarity=0.402 Sum_probs=253.7
Q ss_pred CccceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCCCCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCCCC
Q 011139 73 PFLIGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTA 152 (492)
Q Consensus 73 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~ 152 (492)
++.+..|+++|+||||+|+++|++||||+++||++..|..|.. .|..++.|+|++|+|++.
T Consensus 3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~---~c~~~~~y~~~~SsT~~~---------------- 63 (326)
T cd05487 3 NYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYT---ACVTHNLYDASDSSTYKE---------------- 63 (326)
T ss_pred ccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcch---hhcccCcCCCCCCeeeeE----------------
Confidence 4567899999999999999999999999999999988875311 122238999999999963
Q ss_pred CCCCCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCC-
Q 011139 153 TQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDL- 231 (492)
Q Consensus 153 ~~c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~- 231 (492)
..|.|++.|++|+ +.|.+++|+|++++.. + ++.||++...... .+.....+||||||++..
T Consensus 64 -------~~~~~~~~Yg~g~-~~G~~~~D~v~~g~~~--------~-~~~fg~~~~~~~~-~~~~~~~dGilGLg~~~~s 125 (326)
T cd05487 64 -------NGTEFTIHYASGT-VKGFLSQDIVTVGGIP--------V-TQMFGEVTALPAI-PFMLAKFDGVLGMGYPKQA 125 (326)
T ss_pred -------CCEEEEEEeCCce-EEEEEeeeEEEECCEE--------e-eEEEEEEEeccCC-ccceeecceEEecCChhhc
Confidence 4589999999998 8999999999998653 2 3679998876431 122346799999998754
Q ss_pred -----hHHHHhhhcCCCC-ceeEEeecCCC--CCcceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEccEEeec
Q 011139 232 -----SVISQLASRGITP-RVFSHCLKGQG--NGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQLLSI 299 (492)
Q Consensus 232 -----s~~~~l~~~g~i~-~~FS~~l~~~~--~~~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~g~~~~~ 299 (492)
+++++|++||+|+ ++||+||.+.+ ...|+|+|||+|+ ++++|+|+. ...+|+|++++++|+++.+..
T Consensus 126 ~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~-~~~~w~v~l~~i~vg~~~~~~ 204 (326)
T cd05487 126 IGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTS-KTGFWQIQMKGVSVGSSTLLC 204 (326)
T ss_pred ccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECC-cCceEEEEecEEEECCEEEec
Confidence 3788999999996 79999998753 3579999999994 789999997 578999999999999987632
Q ss_pred CcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEEEecCCcEEEe
Q 011139 300 DPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVL 379 (492)
Q Consensus 300 ~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg~~~~l 379 (492)
..+..++|||||+++++|+++++++++++++.. ..+.|.++|+....+|+|+|+| +|.+++|
T Consensus 205 -------~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~----------~~~~y~~~C~~~~~~P~i~f~f-gg~~~~v 266 (326)
T cd05487 205 -------EDGCTAVVDTGASFISGPTSSISKLMEALGAKE----------RLGDYVVKCNEVPTLPDISFHL-GGKEYTL 266 (326)
T ss_pred -------CCCCEEEECCCccchhCcHHHHHHHHHHhCCcc----------cCCCEEEeccccCCCCCEEEEE-CCEEEEe
Confidence 234679999999999999999999999886542 1356899999888899999999 7899999
Q ss_pred cCCceEEEeeeeCCceEEEEEEEecC-----CCceeeCceeeecEEEEEECCCCEEEEEeC
Q 011139 380 KPEEYLIHLGFYDGAAMWCIGFEKSP-----GGVSILGDLVLKDKIFVYDLARQRVGWANY 435 (492)
Q Consensus 380 ~p~~yi~~~~~~~~~~~c~l~i~~~~-----~~~~iLG~~fl~~~y~vfD~~~~~igfa~~ 435 (492)
++++|+++... .+...|+++|+..+ .+.||||++|||++|+|||++++|||||++
T Consensus 267 ~~~~yi~~~~~-~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 267 SSSDYVLQDSD-FSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred CHHHhEEeccC-CCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 99999997532 34567989998643 357999999999999999999999999985
No 8
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=2.3e-55 Score=437.53 Aligned_cols=304 Identities=28% Similarity=0.536 Sum_probs=249.7
Q ss_pred eeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCCCCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCCCCCCCC
Q 011139 77 GLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQCP 156 (492)
Q Consensus 77 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~c~ 156 (492)
++|+++|+||||+|++.|+|||||+++||+|..|..|..+ ..+.|+|++|+|++.++|++..|.. ...|
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~-----~~~~y~~~~Sst~~~~~C~~~~c~~-----~~~~- 70 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIH-----MEPPYNLNNSITSSILYCDCNKCCY-----CLSC- 70 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCC-----CCCCcCcccccccccccCCCccccc-----cCcC-
Confidence 5899999999999999999999999999999999999765 2478999999999999999999953 2234
Q ss_pred CCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCCh----
Q 011139 157 SGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDLS---- 232 (492)
Q Consensus 157 ~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s---- 232 (492)
.++.|.|.+.|++|+.+.|.+++|+|+|++..... ......++.|||+..+.+.+. ....+||||||++..+
T Consensus 71 -~~~~~~~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~-~~~~~~~~~fg~~~~~~~~~~--~~~~~GilGLg~~~~~~~~~ 146 (326)
T cd06096 71 -LNNKCEYSISYSEGSSISGFYFSDFVSFESYLNSN-SEKESFKKIFGCHTHETNLFL--TQQATGILGLSLTKNNGLPT 146 (326)
T ss_pred -CCCcCcEEEEECCCCceeeEEEEEEEEeccCCCCc-cccccccEEeccCccccCccc--ccccceEEEccCCcccccCc
Confidence 34679999999999888999999999998654221 011234689999998876643 3567999999998643
Q ss_pred HHHHhhhcCCC-C--ceeEEeecCCCCCcceEEECCCCC--------------CCeEEeeCCCCCCcceEEEeEEEEccE
Q 011139 233 VISQLASRGIT-P--RVFSHCLKGQGNGGGILVLGEILE--------------PSIVYSPLVPSKPHYNLNLHGITVNGQ 295 (492)
Q Consensus 233 ~~~~l~~~g~i-~--~~FS~~l~~~~~~~G~l~fGg~d~--------------~~l~~~p~~~~~~~~~v~l~~i~v~g~ 295 (492)
...+|.+++.+ . ++||+||+++ .|+|+|||+|+ +++.|+|+. ...+|.|++++|+|+++
T Consensus 147 ~~~~l~~~~~~~~~~~~FS~~l~~~---~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~-~~~~y~v~l~~i~vg~~ 222 (326)
T cd06096 147 PIILLFTKRPKLKKDKIFSICLSED---GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPIT-RKYYYYVKLEGLSVYGT 222 (326)
T ss_pred hhHHHHHhcccccCCceEEEEEcCC---CeEEEECccChhhhcccccccccccCCceEEecc-CCceEEEEEEEEEEccc
Confidence 33456666654 2 7999999863 69999999983 578999998 45899999999999987
Q ss_pred EeecCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEEEecCCc
Q 011139 296 LLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGA 375 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg~ 375 (492)
.... .......++|||||++++||+++++++.+++ |+|+|.|++|+
T Consensus 223 ~~~~-----~~~~~~~aivDSGTs~~~lp~~~~~~l~~~~-----------------------------P~i~~~f~~g~ 268 (326)
T cd06096 223 TSNS-----GNTKGLGMLVDSGSTLSHFPEDLYNKINNFF-----------------------------PTITIIFENNL 268 (326)
T ss_pred ccce-----ecccCCCEEEeCCCCcccCCHHHHHHHHhhc-----------------------------CcEEEEEcCCc
Confidence 6110 1134678999999999999999999888766 88999996589
Q ss_pred EEEecCCceEEEeeeeCCceEEEEEEEecCCCceeeCceeeecEEEEEECCCCEEEEEeCCCC
Q 011139 376 SMVLKPEEYLIHLGFYDGAAMWCIGFEKSPGGVSILGDLVLKDKIFVYDLARQRVGWANYDCS 438 (492)
Q Consensus 376 ~~~l~p~~yi~~~~~~~~~~~c~l~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~c~ 438 (492)
++.++|++|+++.. ...||+++... .+.+|||++|||++|+|||++++|||||+++|.
T Consensus 269 ~~~i~p~~y~~~~~----~~~c~~~~~~~-~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 269 KIDWKPSSYLYKKE----SFWCKGGEKSV-SNKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred EEEECHHHhccccC----CceEEEEEecC-CCceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 99999999998742 23488887665 568999999999999999999999999999994
No 9
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=4.1e-55 Score=434.85 Aligned_cols=297 Identities=30% Similarity=0.535 Sum_probs=253.2
Q ss_pred eeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCCC--CCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCCCCCC
Q 011139 77 GLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSN--CPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQ 154 (492)
Q Consensus 77 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~--C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~ 154 (492)
..|+++|+||||||++.|++||||+++||+|..|.. |..+ +.|||++|+|++
T Consensus 2 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~~-------~~f~~~~SsT~~------------------- 55 (318)
T cd05477 2 MSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTNH-------TKFNPSQSSTYS------------------- 55 (318)
T ss_pred cEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCcccccc-------CCCCcccCCCce-------------------
Confidence 689999999999999999999999999999999974 6654 899999999995
Q ss_pred CCCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCC----
Q 011139 155 CPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGD---- 230 (492)
Q Consensus 155 c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~---- 230 (492)
..+|.|++.|++|+ +.|.+++|+|++++.. ++++.|||+....+.. +.....+||||||++.
T Consensus 56 ----~~~~~~~~~Yg~Gs-~~G~~~~D~i~~g~~~--------i~~~~Fg~~~~~~~~~-~~~~~~~GilGLg~~~~s~~ 121 (318)
T cd05477 56 ----TNGETFSLQYGSGS-LTGIFGYDTVTVQGII--------ITNQEFGLSETEPGTN-FVYAQFDGILGLAYPSISAG 121 (318)
T ss_pred ----ECCcEEEEEECCcE-EEEEEEeeEEEECCEE--------EcCEEEEEEEeccccc-ccccceeeEeecCccccccc
Confidence 35689999999998 7999999999998754 6789999999865431 1224679999999853
Q ss_pred --ChHHHHhhhcCCCC-ceeEEeecCCC-CCcceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEccEEeecCcc
Q 011139 231 --LSVISQLASRGITP-RVFSHCLKGQG-NGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPS 302 (492)
Q Consensus 231 --~s~~~~l~~~g~i~-~~FS~~l~~~~-~~~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~g~~~~~~~~ 302 (492)
.+++++|+++|.|+ ++||+||+++. ...|+|+|||+|+ +++.|+|+. ...+|.|++++|+|+++.+...
T Consensus 122 ~~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~-~~~~w~v~l~~i~v~g~~~~~~-- 198 (318)
T cd05477 122 GATTVMQGMMQQNLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVT-SETYWQIGIQGFQINGQATGWC-- 198 (318)
T ss_pred CCCCHHHHHHhcCCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecC-CceEEEEEeeEEEECCEEeccc--
Confidence 46899999999996 89999998752 3469999999993 679999997 5789999999999999886432
Q ss_pred cccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEEEecCCcEEEecCC
Q 011139 303 AFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVLKPE 382 (492)
Q Consensus 303 ~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg~~~~l~p~ 382 (492)
..+..+||||||+++++|++++++|++.+.+.. ...++|.++|+....+|+|+|+| +|+++.|+|+
T Consensus 199 ----~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~---------~~~~~~~~~C~~~~~~p~l~~~f-~g~~~~v~~~ 264 (318)
T cd05477 199 ----SQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQ---------DQYGQYVVNCNNIQNLPTLTFTI-NGVSFPLPPS 264 (318)
T ss_pred ----CCCceeeECCCCccEECCHHHHHHHHHHhCCcc---------ccCCCEEEeCCccccCCcEEEEE-CCEEEEECHH
Confidence 234579999999999999999999999887653 23467999999888899999999 7899999999
Q ss_pred ceEEEeeeeCCceEEEEEEEecC------CCceeeCceeeecEEEEEECCCCEEEEEeC
Q 011139 383 EYLIHLGFYDGAAMWCIGFEKSP------GGVSILGDLVLKDKIFVYDLARQRVGWANY 435 (492)
Q Consensus 383 ~yi~~~~~~~~~~~c~l~i~~~~------~~~~iLG~~fl~~~y~vfD~~~~~igfa~~ 435 (492)
+|+.+. ...|+++|++.. ...||||++|||++|+|||++++|||||++
T Consensus 265 ~y~~~~-----~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 265 AYILQN-----NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred HeEecC-----CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 999863 456888997542 246999999999999999999999999985
No 10
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=2.9e-55 Score=437.21 Aligned_cols=303 Identities=28% Similarity=0.481 Sum_probs=255.3
Q ss_pred CCccceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCC----CCCCCCCCCcCCCCccCCCCCcCceecCCCccccCc
Q 011139 72 DPFLIGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCS----NCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASE 147 (492)
Q Consensus 72 ~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~----~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~ 147 (492)
.++.+..|+++|+||||+|++.|++||||+++||+|..|. .|..+ +.|+|++|+|++
T Consensus 5 ~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~-------~~y~~~~Sst~~------------ 65 (329)
T cd05485 5 SNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLH-------NKYDSTKSSTYK------------ 65 (329)
T ss_pred eeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCC-------CeECCcCCCCeE------------
Confidence 4567789999999999999999999999999999999887 35443 789999999995
Q ss_pred cCCCCCCCCCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecC
Q 011139 148 IQTTATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFG 227 (492)
Q Consensus 148 ~~~~~~~c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg 227 (492)
...+.|.+.|++|+ +.|.+++|+|+|++.. +.++.||++..+.+. .+.....+||||||
T Consensus 66 -----------~~~~~~~i~Y~~g~-~~G~~~~D~v~ig~~~--------~~~~~fg~~~~~~~~-~~~~~~~~GilGLg 124 (329)
T cd05485 66 -----------KNGTEFAIQYGSGS-LSGFLSTDTVSVGGVS--------VKGQTFAEAINEPGL-TFVAAKFDGILGMG 124 (329)
T ss_pred -----------ECCeEEEEEECCce-EEEEEecCcEEECCEE--------ECCEEEEEEEecCCc-cccccccceEEEcC
Confidence 34589999999998 7999999999998754 668999999877653 12345689999999
Q ss_pred CCCCh------HHHHhhhcCCCC-ceeEEeecCCCC--CcceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEcc
Q 011139 228 QGDLS------VISQLASRGITP-RVFSHCLKGQGN--GGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNG 294 (492)
Q Consensus 228 ~~~~s------~~~~l~~~g~i~-~~FS~~l~~~~~--~~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~g 294 (492)
++..+ ++.+|++||+|+ ++||+||.+... .+|+|+|||+|+ ++++|+|+. .+.+|.|+++++.+++
T Consensus 125 ~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~~~v~~~~i~v~~ 203 (329)
T cd05485 125 YSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVT-RKGYWQFKMDSVSVGE 203 (329)
T ss_pred CccccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcC-CceEEEEEeeEEEECC
Confidence 98654 578999999996 799999986432 479999999983 789999997 5789999999999998
Q ss_pred EEeecCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEEEecCC
Q 011139 295 QLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGG 374 (492)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg 374 (492)
+.+. ..+..+||||||+++++|++++++|.+++++.. ...++|.++|+....+|+|+|+| ||
T Consensus 204 ~~~~--------~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~---------~~~~~~~~~C~~~~~~p~i~f~f-gg 265 (329)
T cd05485 204 GEFC--------SGGCQAIADTGTSLIAGPVDEIEKLNNAIGAKP---------IIGGEYMVNCSAIPSLPDITFVL-GG 265 (329)
T ss_pred eeec--------CCCcEEEEccCCcceeCCHHHHHHHHHHhCCcc---------ccCCcEEEeccccccCCcEEEEE-CC
Confidence 7652 234579999999999999999999988886531 12357999999877889999999 78
Q ss_pred cEEEecCCceEEEeeeeCCceEEEEEEEecC-----CCceeeCceeeecEEEEEECCCCEEEEEe
Q 011139 375 ASMVLKPEEYLIHLGFYDGAAMWCIGFEKSP-----GGVSILGDLVLKDKIFVYDLARQRVGWAN 434 (492)
Q Consensus 375 ~~~~l~p~~yi~~~~~~~~~~~c~l~i~~~~-----~~~~iLG~~fl~~~y~vfD~~~~~igfa~ 434 (492)
+++.|+|++|+++... .+...|+++++..+ .+.||||++|||++|+|||++++|||||+
T Consensus 266 ~~~~i~~~~yi~~~~~-~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 266 KSFSLTGKDYVLKVTQ-MGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred EEeEEChHHeEEEecC-CCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 9999999999998643 34567888888642 45799999999999999999999999985
No 11
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=3e-55 Score=435.00 Aligned_cols=293 Identities=30% Similarity=0.493 Sum_probs=244.7
Q ss_pred CCccceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCC---CCCCCCCCCcCCCCccCCCCCcCceecCCCccccCcc
Q 011139 72 DPFLIGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCS---NCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEI 148 (492)
Q Consensus 72 ~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~---~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~ 148 (492)
.++.+..|+++|+||||+|+|.|+|||||+++||+|..|. .|..+ +.|+|++|+|++
T Consensus 4 ~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~-------~~y~~~~SsT~~------------- 63 (317)
T cd06098 4 KNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFH-------SKYKSSKSSTYK------------- 63 (317)
T ss_pred cccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCcccccc-------CcCCcccCCCcc-------------
Confidence 3466789999999999999999999999999999999996 58765 899999999995
Q ss_pred CCCCCCCCCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCC
Q 011139 149 QTTATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQ 228 (492)
Q Consensus 149 ~~~~~~c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~ 228 (492)
.....+.+.|++|+ +.|.+++|+|+|++.. +.++.||++..+.+. .+.....+||||||+
T Consensus 64 ----------~~~~~~~i~Yg~G~-~~G~~~~D~v~ig~~~--------v~~~~f~~~~~~~~~-~~~~~~~dGilGLg~ 123 (317)
T cd06098 64 ----------KNGTSASIQYGTGS-ISGFFSQDSVTVGDLV--------VKNQVFIEATKEPGL-TFLLAKFDGILGLGF 123 (317)
T ss_pred ----------cCCCEEEEEcCCce-EEEEEEeeEEEECCEE--------ECCEEEEEEEecCCc-cccccccceeccccc
Confidence 34568999999998 7999999999998754 678999999876543 122356799999999
Q ss_pred CCCh------HHHHhhhcCCCC-ceeEEeecCCC--CCcceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEccE
Q 011139 229 GDLS------VISQLASRGITP-RVFSHCLKGQG--NGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQ 295 (492)
Q Consensus 229 ~~~s------~~~~l~~~g~i~-~~FS~~l~~~~--~~~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~g~ 295 (492)
+..+ ++.+|++||+|+ ++||+||++.. ...|+|+|||+|+ ++++|+|+. ...+|.|++++|+|+++
T Consensus 124 ~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~-~~~~w~v~l~~i~v~g~ 202 (317)
T cd06098 124 QEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVT-RKGYWQFEMGDVLIGGK 202 (317)
T ss_pred cchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecC-cCcEEEEEeCeEEECCE
Confidence 7543 678999999996 79999998642 3579999999994 689999997 56899999999999998
Q ss_pred EeecCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEEEecCCc
Q 011139 296 LLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGA 375 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg~ 375 (492)
.+... .....+||||||+++++|+++++++. |.++|.....+|+|+|+| +|+
T Consensus 203 ~~~~~------~~~~~aivDTGTs~~~lP~~~~~~i~---------------------~~~~C~~~~~~P~i~f~f-~g~ 254 (317)
T cd06098 203 STGFC------AGGCAAIADSGTSLLAGPTTIVTQIN---------------------SAVDCNSLSSMPNVSFTI-GGK 254 (317)
T ss_pred Eeeec------CCCcEEEEecCCcceeCCHHHHHhhh---------------------ccCCccccccCCcEEEEE-CCE
Confidence 76532 23467999999999999998765542 456888767899999999 789
Q ss_pred EEEecCCceEEEeeeeCCceEEEEEEEecC-----CCceeeCceeeecEEEEEECCCCEEEEEe
Q 011139 376 SMVLKPEEYLIHLGFYDGAAMWCIGFEKSP-----GGVSILGDLVLKDKIFVYDLARQRVGWAN 434 (492)
Q Consensus 376 ~~~l~p~~yi~~~~~~~~~~~c~l~i~~~~-----~~~~iLG~~fl~~~y~vfD~~~~~igfa~ 434 (492)
.++|+|++|+++... +....|.++|+..+ ...||||++|||++|+|||++++|||||+
T Consensus 255 ~~~l~~~~yi~~~~~-~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 255 TFELTPEQYILKVGE-GAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred EEEEChHHeEEeecC-CCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 999999999987532 23457888887643 34799999999999999999999999995
No 12
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=7.2e-55 Score=433.11 Aligned_cols=298 Identities=30% Similarity=0.489 Sum_probs=253.1
Q ss_pred CccceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCC--CCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCC
Q 011139 73 PFLIGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCS--NCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQT 150 (492)
Q Consensus 73 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~--~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~ 150 (492)
++.+..|+++|+||||+|++.|++||||+++||+|..|. .|..+ +.|++++|+|++
T Consensus 5 n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~~-------~~y~~~~Sst~~--------------- 62 (320)
T cd05488 5 NYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLH-------SKYDSSASSTYK--------------- 62 (320)
T ss_pred ccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCCc-------ceECCCCCccee---------------
Confidence 455689999999999999999999999999999999997 47655 799999999985
Q ss_pred CCCCCCCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCC
Q 011139 151 TATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGD 230 (492)
Q Consensus 151 ~~~~c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~ 230 (492)
.++|.+.+.|++|+ +.|.+++|+|++++.. ++++.|||+....+.. +.....+||||||++.
T Consensus 63 --------~~~~~~~~~y~~g~-~~G~~~~D~v~ig~~~--------~~~~~f~~a~~~~g~~-~~~~~~dGilGLg~~~ 124 (320)
T cd05488 63 --------ANGTEFKIQYGSGS-LEGFVSQDTLSIGDLT--------IKKQDFAEATSEPGLA-FAFGKFDGILGLAYDT 124 (320)
T ss_pred --------eCCCEEEEEECCce-EEEEEEEeEEEECCEE--------ECCEEEEEEecCCCcc-eeeeeeceEEecCCcc
Confidence 35689999999998 7999999999998754 6689999998765531 2234679999999976
Q ss_pred Ch------HHHHhhhcCCCC-ceeEEeecCCCCCcceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEccEEeec
Q 011139 231 LS------VISQLASRGITP-RVFSHCLKGQGNGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQLLSI 299 (492)
Q Consensus 231 ~s------~~~~l~~~g~i~-~~FS~~l~~~~~~~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~g~~~~~ 299 (492)
.+ .+.+|++||+|+ ++||+||++.+...|+|+|||+|+ ++++|+|+. ...+|.|++++|+|+++.+..
T Consensus 125 ~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~w~v~l~~i~vg~~~~~~ 203 (320)
T cd05488 125 ISVNKIVPPFYNMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVR-RKAYWEVELEKIGLGDEELEL 203 (320)
T ss_pred ccccCCCCHHHHHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCC-cCcEEEEEeCeEEECCEEecc
Confidence 54 456899999995 899999998656689999999984 689999998 568999999999999987643
Q ss_pred CcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEEEecCCcEEEe
Q 011139 300 DPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVL 379 (492)
Q Consensus 300 ~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg~~~~l 379 (492)
.+..++|||||+++++|+++++++.+++.+.. ...++|.++|+....+|+|+|+| +|+++.|
T Consensus 204 --------~~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~---------~~~~~~~~~C~~~~~~P~i~f~f-~g~~~~i 265 (320)
T cd05488 204 --------ENTGAAIDTGTSLIALPSDLAEMLNAEIGAKK---------SWNGQYTVDCSKVDSLPDLTFNF-DGYNFTL 265 (320)
T ss_pred --------CCCeEEEcCCcccccCCHHHHHHHHHHhCCcc---------ccCCcEEeeccccccCCCEEEEE-CCEEEEE
Confidence 24579999999999999999999988885432 23567999999878899999999 7899999
Q ss_pred cCCceEEEeeeeCCceEEEEEEEecC-----CCceeeCceeeecEEEEEECCCCEEEEEe
Q 011139 380 KPEEYLIHLGFYDGAAMWCIGFEKSP-----GGVSILGDLVLKDKIFVYDLARQRVGWAN 434 (492)
Q Consensus 380 ~p~~yi~~~~~~~~~~~c~l~i~~~~-----~~~~iLG~~fl~~~y~vfD~~~~~igfa~ 434 (492)
||++|+++. .+.|.+.+...+ ...||||++|||++|+|||++++|||||+
T Consensus 266 ~~~~y~~~~-----~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 266 GPFDYTLEV-----SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred CHHHheecC-----CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 999999853 346888887643 34699999999999999999999999996
No 13
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=1e-54 Score=444.00 Aligned_cols=301 Identities=25% Similarity=0.383 Sum_probs=248.6
Q ss_pred CccceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCCC--CCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCC
Q 011139 73 PFLIGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSN--CPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQT 150 (492)
Q Consensus 73 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~--C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~ 150 (492)
++.+.+|+++|+||||||+|.|+|||||+++||+|..|.. |..+ +.|||++|+|++.
T Consensus 134 n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~-------~~yd~s~SsT~~~-------------- 192 (453)
T PTZ00147 134 DLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETK-------NLYDSSKSKTYEK-------------- 192 (453)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCC-------CccCCccCcceEE--------------
Confidence 4556899999999999999999999999999999999974 6654 8999999999963
Q ss_pred CCCCCCCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCC-CCCCCCCcceeeecCCC
Q 011139 151 TATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGD-LSKTDKAIDGIFGFGQG 229 (492)
Q Consensus 151 ~~~~c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~-~~~~~~~~~GIlGLg~~ 229 (492)
.++.|++.|++|+ +.|.+++|+|+|++.. ++ ..|+++....+. ..+.....|||||||++
T Consensus 193 ---------~~~~f~i~Yg~Gs-vsG~~~~DtVtiG~~~--------v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~ 253 (453)
T PTZ00147 193 ---------DGTKVEMNYVSGT-VSGFFSKDLVTIGNLS--------VP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWK 253 (453)
T ss_pred ---------CCCEEEEEeCCCC-EEEEEEEEEEEECCEE--------EE-EEEEEEEeccCcccccccccccceecccCC
Confidence 4578999999998 8999999999998754 33 578888766542 01233468999999998
Q ss_pred CCh------HHHHhhhcCCCC-ceeEEeecCCCCCcceEEECCCC----CCCeEEeeCCCCCCcceEEEeEEEEccEEee
Q 011139 230 DLS------VISQLASRGITP-RVFSHCLKGQGNGGGILVLGEIL----EPSIVYSPLVPSKPHYNLNLHGITVNGQLLS 298 (492)
Q Consensus 230 ~~s------~~~~l~~~g~i~-~~FS~~l~~~~~~~G~l~fGg~d----~~~l~~~p~~~~~~~~~v~l~~i~v~g~~~~ 298 (492)
..+ ++.+|++||+|+ ++||+||++.+...|+|+|||+| ++++.|+|+. ...+|.|+++ +.+++...
T Consensus 254 ~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~-~~~~W~V~l~-~~vg~~~~- 330 (453)
T PTZ00147 254 DLSIGSVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLN-HDLYWQVDLD-VHFGNVSS- 330 (453)
T ss_pred ccccccCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcC-CCceEEEEEE-EEECCEec-
Confidence 654 678999999996 79999998765668999999999 3799999997 5789999998 46765432
Q ss_pred cCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEEEecCCcEEE
Q 011139 299 IDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMV 378 (492)
Q Consensus 299 ~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg~~~~ 378 (492)
....+||||||+++++|+++++++.+++++.. .+..+.|.++|+. ..+|+|+|.| +|..++
T Consensus 331 ---------~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~--------~~~~~~y~~~C~~-~~lP~~~f~f-~g~~~~ 391 (453)
T PTZ00147 331 ---------EKANVIVDSGTSVITVPTEFLNKFVESLDVFK--------VPFLPLYVTTCNN-TKLPTLEFRS-PNKVYT 391 (453)
T ss_pred ---------CceeEEECCCCchhcCCHHHHHHHHHHhCCee--------cCCCCeEEEeCCC-CCCCeEEEEE-CCEEEE
Confidence 34679999999999999999999999886531 1223458889985 5789999999 688999
Q ss_pred ecCCceEEEeeeeCCceEEEEEEEecC--CCceeeCceeeecEEEEEECCCCEEEEEeCC
Q 011139 379 LKPEEYLIHLGFYDGAAMWCIGFEKSP--GGVSILGDLVLKDKIFVYDLARQRVGWANYD 436 (492)
Q Consensus 379 l~p~~yi~~~~~~~~~~~c~l~i~~~~--~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~ 436 (492)
|+|++|+.+... .+.+.|.++|++.+ .+.||||++|||++|+|||++++|||||+++
T Consensus 392 L~p~~yi~~~~~-~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 392 LEPEYYLQPIED-IGSALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred ECHHHheecccc-CCCcEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 999999976432 34567888998865 4579999999999999999999999999986
No 14
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=7.7e-54 Score=436.63 Aligned_cols=301 Identities=23% Similarity=0.368 Sum_probs=246.3
Q ss_pred CccceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCC--CCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCC
Q 011139 73 PFLIGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCS--NCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQT 150 (492)
Q Consensus 73 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~--~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~ 150 (492)
++.+.+|+++|+||||+|+|.|+|||||+++||+|..|. .|..+ +.|+|++|+|++
T Consensus 133 d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~-------~~yd~s~SsT~~--------------- 190 (450)
T PTZ00013 133 DVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIK-------NLYDSSKSKSYE--------------- 190 (450)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCccccccC-------CCccCccCcccc---------------
Confidence 345679999999999999999999999999999999997 47665 899999999995
Q ss_pred CCCCCCCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCC-CCCCCCCcceeeecCCC
Q 011139 151 TATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGD-LSKTDKAIDGIFGFGQG 229 (492)
Q Consensus 151 ~~~~c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~-~~~~~~~~~GIlGLg~~ 229 (492)
..++.+++.|++|+ +.|.+++|+|++++.. .. ..|+++....+. ..+....+|||||||++
T Consensus 191 --------~~~~~~~i~YG~Gs-v~G~~~~Dtv~iG~~~--------~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~ 252 (450)
T PTZ00013 191 --------KDGTKVDITYGSGT-VKGFFSKDLVTLGHLS--------MP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWK 252 (450)
T ss_pred --------cCCcEEEEEECCce-EEEEEEEEEEEECCEE--------Ec-cEEEEEEeccccccceecccccceecccCC
Confidence 34579999999998 8999999999998754 33 578887765321 11123467999999997
Q ss_pred CC------hHHHHhhhcCCCC-ceeEEeecCCCCCcceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEccEEee
Q 011139 230 DL------SVISQLASRGITP-RVFSHCLKGQGNGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQLLS 298 (492)
Q Consensus 230 ~~------s~~~~l~~~g~i~-~~FS~~l~~~~~~~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~g~~~~ 298 (492)
.. +++.+|++||+|+ ++||+||++.+...|+|+|||+|+ +++.|+|+. ...+|.|+++ +.++....
T Consensus 253 ~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~-~~~yW~I~l~-v~~G~~~~- 329 (450)
T PTZ00013 253 DLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLN-HDLYWQIDLD-VHFGKQTM- 329 (450)
T ss_pred ccccccCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcC-cCceEEEEEE-EEECceec-
Confidence 65 3788999999997 799999987655689999999994 789999997 5789999998 66654322
Q ss_pred cCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEEEecCCcEEE
Q 011139 299 IDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMV 378 (492)
Q Consensus 299 ~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg~~~~ 378 (492)
....+++||||+++++|+++++++.+.++... ....+.|.++|+. ..+|+|+|.| +|.+++
T Consensus 330 ---------~~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~--------~~~~~~y~~~C~~-~~lP~i~F~~-~g~~~~ 390 (450)
T PTZ00013 330 ---------QKANVIVDSGTTTITAPSEFLNKFFANLNVIK--------VPFLPFYVTTCDN-KEMPTLEFKS-ANNTYT 390 (450)
T ss_pred ---------cccceEECCCCccccCCHHHHHHHHHHhCCee--------cCCCCeEEeecCC-CCCCeEEEEE-CCEEEE
Confidence 34579999999999999999999998876431 1223458889975 5789999999 789999
Q ss_pred ecCCceEEEeeeeCCceEEEEEEEecC--CCceeeCceeeecEEEEEECCCCEEEEEeCC
Q 011139 379 LKPEEYLIHLGFYDGAAMWCIGFEKSP--GGVSILGDLVLKDKIFVYDLARQRVGWANYD 436 (492)
Q Consensus 379 l~p~~yi~~~~~~~~~~~c~l~i~~~~--~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~ 436 (492)
|+|++|+.+... .++..|.++|++.+ .+.||||++|||++|+|||++++|||||+++
T Consensus 391 L~p~~Yi~~~~~-~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 391 LEPEYYMNPLLD-VDDTLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred ECHHHheehhcc-CCCCeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 999999976332 23457888998765 4579999999999999999999999999986
No 15
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=7.8e-54 Score=422.08 Aligned_cols=290 Identities=35% Similarity=0.620 Sum_probs=239.0
Q ss_pred eEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCCCCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCCCCCCCCC
Q 011139 78 LYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQCPS 157 (492)
Q Consensus 78 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~c~~ 157 (492)
+|+++|+||||||++.|++||||+++||+|..|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c----------------------------------------------- 33 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC----------------------------------------------- 33 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC-----------------------------------------------
Confidence 599999999999999999999999999987543
Q ss_pred CCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCChHHHHh
Q 011139 158 GSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDLSVISQL 237 (492)
Q Consensus 158 ~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~l 237 (492)
|.|.++|++|+.+.|.+++|+|+|++.. ..+++.|||+..+++.+ ...+||||||++..+++.||
T Consensus 34 ----~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~-------~~~~~~Fg~~~~~~~~~----~~~~GilGLg~~~~s~~~ql 98 (299)
T cd05472 34 ----CLYQVSYGDGSYTTGDLATDTLTLGSSD-------VVPGFAFGCGHDNEGLF----GGAAGLLGLGRGKLSLPSQT 98 (299)
T ss_pred ----CeeeeEeCCCceEEEEEEEEEEEeCCCC-------ccCCEEEECCccCCCcc----CCCCEEEECCCCcchHHHHh
Confidence 3688999999978999999999998641 26789999999887653 26799999999999999998
Q ss_pred hhcCCCCceeEEeecCCC-CCcceEEECCCCC--CCeEEeeCCCCC---CcceEEEeEEEEccEEeecCcccccccCCCc
Q 011139 238 ASRGITPRVFSHCLKGQG-NGGGILVLGEILE--PSIVYSPLVPSK---PHYNLNLHGITVNGQLLSIDPSAFAASNNRE 311 (492)
Q Consensus 238 ~~~g~i~~~FS~~l~~~~-~~~G~l~fGg~d~--~~l~~~p~~~~~---~~~~v~l~~i~v~g~~~~~~~~~~~~~~~~~ 311 (492)
..+ .+++||+||++.. ..+|+|+|||+|+ +++.|+|++... .+|.|++++|+|+++.+...... .....
T Consensus 99 ~~~--~~~~FS~~L~~~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~---~~~~~ 173 (299)
T cd05472 99 ASS--YGGVFSYCLPDRSSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPAS---FGAGG 173 (299)
T ss_pred hHh--hcCceEEEccCCCCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccc---cCCCC
Confidence 765 3589999998754 5589999999996 799999998542 58999999999999987643211 23567
Q ss_pred EEEecccccccccHHHHHHHHHHHHHHhccCCC-CCCCCCCceEEecCCCcccCCeEEEEecCCcEEEecCCceEEEeee
Q 011139 312 TIVDSGTTLTYLVEEAFDPFVSAITATVSQSVT-PTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVLKPEEYLIHLGF 390 (492)
Q Consensus 312 ~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~-~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg~~~~l~p~~yi~~~~~ 390 (492)
++|||||+++++|++++++|.+++.++...... ......+.||.++|.....+|+|+|+|++|+++.|+|++|++...
T Consensus 174 ~ivDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~- 252 (299)
T cd05472 174 VIIDSGTVITRLPPSAYAALRDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVD- 252 (299)
T ss_pred eEEeCCCcceecCHHHHHHHHHHHHHHhccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEec-
Confidence 999999999999999999999999987643211 111112358888877667899999999668999999999998432
Q ss_pred eCCceEEEEEEEecC--CCceeeCceeeecEEEEEECCCCEEEEEeCCC
Q 011139 391 YDGAAMWCIGFEKSP--GGVSILGDLVLKDKIFVYDLARQRVGWANYDC 437 (492)
Q Consensus 391 ~~~~~~c~l~i~~~~--~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~c 437 (492)
. ...+|+++...+ .+.||||+.|||++|+|||++++|||||+++|
T Consensus 253 -~-~~~~C~~~~~~~~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 253 -D-SSQVCLAFAGTSDDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred -C-CCCEEEEEeCCCCCCCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 2 234568887763 45799999999999999999999999999999
No 16
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.6e-51 Score=416.10 Aligned_cols=319 Identities=25% Similarity=0.341 Sum_probs=242.2
Q ss_pred eEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCCCCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCCCCCCCCC
Q 011139 78 LYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQCPS 157 (492)
Q Consensus 78 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~c~~ 157 (492)
.|+++|+||||+|+|.|+|||||+++||+|..|.. . ++.|+|++|+|++
T Consensus 3 ~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~--~-------~~~f~~~~SsT~~---------------------- 51 (364)
T cd05473 3 GYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPF--I-------HTYFHRELSSTYR---------------------- 51 (364)
T ss_pred ceEEEEEecCCCceEEEEEecCCcceEEEcCCCcc--c-------cccCCchhCcCcc----------------------
Confidence 79999999999999999999999999999987632 2 3789999999996
Q ss_pred CCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCC------
Q 011139 158 GSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDL------ 231 (492)
Q Consensus 158 ~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~------ 231 (492)
..+|.|+++|++|+ +.|.+++|+|+|++.. +....+.|++.....+.+. .....|||||||++.+
T Consensus 52 -~~~~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~------~~~~~~~~~~~~~~~~~~~-~~~~~dGIlGLg~~~l~~~~~~ 122 (364)
T cd05473 52 -DLGKGVTVPYTQGS-WEGELGTDLVSIPKGP------NVTFRANIAAITESENFFL-NGSNWEGILGLAYAELARPDSS 122 (364)
T ss_pred -cCCceEEEEECcce-EEEEEEEEEEEECCCC------ccceEEeeEEEecccccee-cccccceeeeecccccccCCCC
Confidence 34579999999998 7999999999998532 1122234556554443321 2235799999998754
Q ss_pred --hHHHHhhhcCCCCceeEEeecC---------CCCCcceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEccEE
Q 011139 232 --SVISQLASRGITPRVFSHCLKG---------QGNGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQL 296 (492)
Q Consensus 232 --s~~~~l~~~g~i~~~FS~~l~~---------~~~~~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~g~~ 296 (492)
+++++|++|+.++++||+||.. ....+|+|+|||+|+ +++.|+|+. ...+|.|.+++|+|+++.
T Consensus 123 ~~~~~~~l~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~-~~~~~~v~l~~i~vg~~~ 201 (364)
T cd05473 123 VEPFFDSLVKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIR-EEWYYEVIILKLEVGGQS 201 (364)
T ss_pred CCCHHHHHHhccCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecC-cceeEEEEEEEEEECCEe
Confidence 4788999999887899998852 123479999999983 689999997 567999999999999998
Q ss_pred eecCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCc-----ccCCeEEEEe
Q 011139 297 LSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVS-----EIFPQVSLNF 371 (492)
Q Consensus 297 ~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~-----~~~p~i~f~f 371 (492)
+..+...+ ....+||||||+++++|+++++++.+++.++......+ ......+.++|... ..+|+|+|+|
T Consensus 202 ~~~~~~~~---~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~--~~~~~~~~~~C~~~~~~~~~~~P~i~~~f 276 (364)
T cd05473 202 LNLDCKEY---NYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFP--DGFWLGSQLACWQKGTTPWEIFPKISIYL 276 (364)
T ss_pred cccccccc---cCccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCC--ccccCcceeecccccCchHhhCCcEEEEE
Confidence 86543222 12469999999999999999999999999875321100 11112234567533 2589999999
Q ss_pred cCC-----cEEEecCCceEEEeeeeCCceEEE-EEEEecCCCceeeCceeeecEEEEEECCCCEEEEEeCCCCCCcce
Q 011139 372 EGG-----ASMVLKPEEYLIHLGFYDGAAMWC-IGFEKSPGGVSILGDLVLKDKIFVYDLARQRVGWANYDCSLSVNV 443 (492)
Q Consensus 372 ~gg-----~~~~l~p~~yi~~~~~~~~~~~c~-l~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~c~~~~~~ 443 (492)
+|+ .++.|+|++|+......+....|. +++... .+.||||+.|||++|+|||++++|||||+++|......
T Consensus 277 ~g~~~~~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~~-~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~~~~~ 353 (364)
T cd05473 277 RDENSSQSFRITILPQLYLRPVEDHGTQLDCYKFAISQS-TNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAEHDGF 353 (364)
T ss_pred ccCCCCceEEEEECHHHhhhhhccCCCcceeeEEeeecC-CCceEEeeeeEcceEEEEECCCCEEeeEecccccccCc
Confidence 652 478999999998643212234564 455433 45799999999999999999999999999999865443
No 17
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1.7e-50 Score=392.50 Aligned_cols=261 Identities=36% Similarity=0.778 Sum_probs=216.9
Q ss_pred eeEEEEEEeCCCCcEEEEEEecCCCeeEEeCC-CCCCCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCCCCCCC
Q 011139 77 GLYFTKVKLGSPPKEFNVQIDTGSDILWVTCS-SCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQC 155 (492)
Q Consensus 77 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~-~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~c 155 (492)
+.|+++|+||||||++.|++||||+++||+|. .|..|
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c------------------------------------------ 38 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC------------------------------------------ 38 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC------------------------------------------
Confidence 47999999999999999999999999999984 55444
Q ss_pred CCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCChHHH
Q 011139 156 PSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDLSVIS 235 (492)
Q Consensus 156 ~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ 235 (492)
.|.|+++|+||+.+.|.+++|+|+|+...+.. ...++.|||+..+.+.+.......+||||||++..++++
T Consensus 39 -----~c~~~i~Ygd~~~~~G~~~~D~v~~~~~~~~~----~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ 109 (273)
T cd05475 39 -----QCDYEIEYADGGSSMGVLVTDIFSLKLTNGSR----AKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPS 109 (273)
T ss_pred -----cCccEeEeCCCCceEEEEEEEEEEEeecCCCc----ccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHH
Confidence 26799999988889999999999997532221 256899999987766543344578999999999999999
Q ss_pred HhhhcCCCCceeEEeecCCCCCcceEEECCCC--CCCeEEeeCCCC--CCcceEEEeEEEEccEEeecCcccccccCCCc
Q 011139 236 QLASRGITPRVFSHCLKGQGNGGGILVLGEIL--EPSIVYSPLVPS--KPHYNLNLHGITVNGQLLSIDPSAFAASNNRE 311 (492)
Q Consensus 236 ~l~~~g~i~~~FS~~l~~~~~~~G~l~fGg~d--~~~l~~~p~~~~--~~~~~v~l~~i~v~g~~~~~~~~~~~~~~~~~ 311 (492)
||+++++|+++||+||.+ ..+|.|+||+.. .+++.|+|+..+ ..+|.|++.+|+|+++... .....
T Consensus 110 ql~~~~~i~~~Fs~~l~~--~~~g~l~~G~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~--------~~~~~ 179 (273)
T cd05475 110 QLASQGIIKNVIGHCLSS--NGGGFLFFGDDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTG--------GKGLE 179 (273)
T ss_pred HHHhcCCcCceEEEEccC--CCCeEEEECCCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECc--------CCCce
Confidence 999999888899999986 347999999654 367999999854 4799999999999998532 24567
Q ss_pred EEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEEEecCC---cEEEecCCceEEEe
Q 011139 312 TIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGG---ASMVLKPEEYLIHL 388 (492)
Q Consensus 312 ~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg---~~~~l~p~~yi~~~ 388 (492)
+||||||+++++|+++| +|+|+|+|.++ ++++|+|++|+++.
T Consensus 180 ~ivDTGTt~t~lp~~~y-----------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~ 224 (273)
T cd05475 180 VVFDSGSSYTYFNAQAY-----------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIIS 224 (273)
T ss_pred EEEECCCceEEcCCccc-----------------------------------cccEEEEECCCCceeEEEeCCCceEEEc
Confidence 99999999999999865 58899999543 79999999999874
Q ss_pred eeeCCceEEEEEEEecC----CCceeeCceeeecEEEEEECCCCEEEEEeCCC
Q 011139 389 GFYDGAAMWCIGFEKSP----GGVSILGDLVLKDKIFVYDLARQRVGWANYDC 437 (492)
Q Consensus 389 ~~~~~~~~c~l~i~~~~----~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~c 437 (492)
. ++.+|+++.... .+.||||+.|||++|+|||++++|||||+++|
T Consensus 225 ~----~~~~Cl~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 225 E----KGNVCLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred C----CCCEEEEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 2 234677776433 35799999999999999999999999999998
No 18
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=7.8e-51 Score=396.41 Aligned_cols=265 Identities=28% Similarity=0.464 Sum_probs=224.2
Q ss_pred EEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCCCCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCCCCCCCCCC
Q 011139 79 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQCPSG 158 (492)
Q Consensus 79 Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~c~~~ 158 (492)
|+++|+||||+|++.|+|||||+++||+|+.|..|..+ ..+.|++++|+|++..
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~-----~~~~y~~~~Sst~~~~--------------------- 54 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQG-----GHKLYDPSKSSTAKLL--------------------- 54 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhc-----cCCcCCCccCccceec---------------------
Confidence 88999999999999999999999999999999987654 2367999999999632
Q ss_pred CCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCC-------
Q 011139 159 SNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDL------- 231 (492)
Q Consensus 159 ~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~------- 231 (492)
..+.|.+.|++|+.+.|.+++|+|.|++.. +.++.||+++...+.+ +.....+||||||++..
T Consensus 55 -~~~~~~i~Y~~G~~~~G~~~~D~v~ig~~~--------~~~~~fg~~~~~~~~~-~~~~~~dGilGLg~~~~~~~~~~~ 124 (278)
T cd06097 55 -PGATWSISYGDGSSASGIVYTDTVSIGGVE--------VPNQAIELATAVSASF-FSDTASDGLLGLAFSSINTVQPPK 124 (278)
T ss_pred -CCcEEEEEeCCCCeEEEEEEEEEEEECCEE--------ECCeEEEEEeecCccc-cccccccceeeeccccccccccCC
Confidence 357999999999878999999999998754 6789999999876532 13357899999998754
Q ss_pred --hHHHHhhhcCCCCceeEEeecCCCCCcceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEccEEeecCccccc
Q 011139 232 --SVISQLASRGITPRVFSHCLKGQGNGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFA 305 (492)
Q Consensus 232 --s~~~~l~~~g~i~~~FS~~l~~~~~~~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~g~~~~~~~~~~~ 305 (492)
+++++|.+++. +++||+||++ +..|+|+|||+|+ +++.|+|+.....+|.|++++|+|+++...
T Consensus 125 ~~~~~~~l~~~~~-~~~Fs~~l~~--~~~G~l~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~------- 194 (278)
T cd06097 125 QKTFFENALSSLD-APLFTADLRK--AAPGFYTFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPW------- 194 (278)
T ss_pred CCCHHHHHHHhcc-CceEEEEecC--CCCcEEEEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCccee-------
Confidence 46788998875 7899999986 3479999999994 799999998657899999999999987432
Q ss_pred ccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEEEecCCcEEEecCCceE
Q 011139 306 ASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVLKPEEYL 385 (492)
Q Consensus 306 ~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg~~~~l~p~~yi 385 (492)
...+..++|||||+++++|+++++++.+++.+.. ++...++|.++|+.. +|+|+|+|
T Consensus 195 ~~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~~-------~~~~~~~~~~~C~~~--~P~i~f~~-------------- 251 (278)
T cd06097 195 SRSGFSAIADTGTTLILLPDAIVEAYYSQVPGAY-------YDSEYGGWVFPCDTT--LPDLSFAV-------------- 251 (278)
T ss_pred ecCCceEEeecCCchhcCCHHHHHHHHHhCcCCc-------ccCCCCEEEEECCCC--CCCEEEEE--------------
Confidence 1245789999999999999999999999884321 233467899999853 89999998
Q ss_pred EEeeeeCCceEEEEEEEecCCCceeeCceeeecEEEEEECCCCEEEEEe
Q 011139 386 IHLGFYDGAAMWCIGFEKSPGGVSILGDLVLKDKIFVYDLARQRVGWAN 434 (492)
Q Consensus 386 ~~~~~~~~~~~c~l~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfa~ 434 (492)
.||||++|||++|+|||++++|||||+
T Consensus 252 ----------------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 ----------------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred ----------------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 599999999999999999999999995
No 19
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=8.4e-50 Score=400.47 Aligned_cols=324 Identities=22% Similarity=0.399 Sum_probs=254.8
Q ss_pred eCCCCcE-EEEEEecCCCeeEEeCCCCCCCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCCCC---------CC
Q 011139 85 LGSPPKE-FNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTA---------TQ 154 (492)
Q Consensus 85 iGtP~q~-~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~---------~~ 154 (492)
+|||-.+ |.|++||||+++||+|.+ .+|+||+.++|+++.|.....+.. ..
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~-------------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~ 62 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA-------------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPG 62 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC-------------------CCcCCCCccCcCChhhccccccCCCccccCCCCCC
Confidence 5888888 999999999999999853 347899999999999986543311 24
Q ss_pred CCCCCCCCeeeee-eCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCChH
Q 011139 155 CPSGSNQCSYSFE-YGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDLSV 233 (492)
Q Consensus 155 c~~~~~~~~~~i~-Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~ 233 (492)
|. ++.|.|... |++|+.+.|++++|+|+|+...+.......++++.|||+..+.... ....+|||||||++++|+
T Consensus 63 c~--~~~C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~--~~~~~dGIlGLg~~~lSl 138 (362)
T cd05489 63 CG--NNTCTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKG--LPPGAQGVAGLGRSPLSL 138 (362)
T ss_pred CC--CCcCeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccC--CccccccccccCCCccch
Confidence 53 346888665 7799889999999999998543322111236789999998764221 123579999999999999
Q ss_pred HHHhhhcCCCCceeEEeecCCCCCcceEEECCCCC----------CCeEEeeCCCC---CCcceEEEeEEEEccEEeecC
Q 011139 234 ISQLASRGITPRVFSHCLKGQGNGGGILVLGEILE----------PSIVYSPLVPS---KPHYNLNLHGITVNGQLLSID 300 (492)
Q Consensus 234 ~~~l~~~g~i~~~FS~~l~~~~~~~G~l~fGg~d~----------~~l~~~p~~~~---~~~~~v~l~~i~v~g~~~~~~ 300 (492)
+.||..++..+++||+||.++.+.+|+|+||+.+. +.+.|+|++.+ ..+|.|+|++|+|+++.+.++
T Consensus 139 ~sql~~~~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~ 218 (362)
T cd05489 139 PAQLASAFGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLN 218 (362)
T ss_pred HHHhhhhcCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCC
Confidence 99999877667899999987655689999999873 67999999864 369999999999999998876
Q ss_pred ccccc--ccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCC--CCCCCceEEec----CCCcccCCeEEEEec
Q 011139 301 PSAFA--ASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPT--MSKGKQCYLVS----NSVSEIFPQVSLNFE 372 (492)
Q Consensus 301 ~~~~~--~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~--~~~~~~~y~v~----c~~~~~~p~i~f~f~ 372 (492)
+..+. .....++||||||++++||+++|++|.+++.+++....... ....+.||... |.....+|+|+|+|+
T Consensus 219 ~~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~ 298 (362)
T cd05489 219 PTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLD 298 (362)
T ss_pred chhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEe
Confidence 55443 22456899999999999999999999999998876432211 11125888743 333468999999997
Q ss_pred C-CcEEEecCCceEEEeeeeCCceEEEEEEEecC---CCceeeCceeeecEEEEEECCCCEEEEEeC
Q 011139 373 G-GASMVLKPEEYLIHLGFYDGAAMWCIGFEKSP---GGVSILGDLVLKDKIFVYDLARQRVGWANY 435 (492)
Q Consensus 373 g-g~~~~l~p~~yi~~~~~~~~~~~c~l~i~~~~---~~~~iLG~~fl~~~y~vfD~~~~~igfa~~ 435 (492)
| |+++.|+|++|+++.. +...|++|...+ ...||||+.|||++|+|||++++|||||++
T Consensus 299 g~g~~~~l~~~ny~~~~~----~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 299 GGGVNWTIFGANSMVQVK----GGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred CCCeEEEEcCCceEEEcC----CCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 6 7999999999999853 234569998765 347999999999999999999999999974
No 20
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=6.3e-50 Score=387.17 Aligned_cols=254 Identities=43% Similarity=0.833 Sum_probs=218.4
Q ss_pred eEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCCCCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCCCCCCCCC
Q 011139 78 LYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQCPS 157 (492)
Q Consensus 78 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~c~~ 157 (492)
.|+++|+||||+|++.|+|||||+++||+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-------------------------------------------------- 30 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-------------------------------------------------- 30 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC--------------------------------------------------
Confidence 499999999999999999999999999985
Q ss_pred CCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCChHHHHh
Q 011139 158 GSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDLSVISQL 237 (492)
Q Consensus 158 ~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~l 237 (492)
|.|.++|+||+.+.|.+++|+|.|++.. ..++++.|||+..+++ + .....+||||||+...++++||
T Consensus 31 ----~~~~~~Y~dg~~~~G~~~~D~v~~g~~~------~~~~~~~Fg~~~~~~~-~--~~~~~~GIlGLg~~~~s~~~ql 97 (265)
T cd05476 31 ----CSYEYSYGDGSSTSGVLATETFTFGDSS------VSVPNVAFGCGTDNEG-G--SFGGADGILGLGRGPLSLVSQL 97 (265)
T ss_pred ----CceEeEeCCCceeeeeEEEEEEEecCCC------CccCCEEEEecccccC-C--ccCCCCEEEECCCCcccHHHHh
Confidence 2578899999889999999999999751 1267899999998876 2 3457899999999999999999
Q ss_pred hhcCCCCceeEEeecCC--CCCcceEEECCCCC---CCeEEeeCCCC---CCcceEEEeEEEEccEEeecCccccc--cc
Q 011139 238 ASRGITPRVFSHCLKGQ--GNGGGILVLGEILE---PSIVYSPLVPS---KPHYNLNLHGITVNGQLLSIDPSAFA--AS 307 (492)
Q Consensus 238 ~~~g~i~~~FS~~l~~~--~~~~G~l~fGg~d~---~~l~~~p~~~~---~~~~~v~l~~i~v~g~~~~~~~~~~~--~~ 307 (492)
..++ ++||+||.+. ....|+|+||++|+ +++.|+|++.+ ..+|.|++++|+|+++.+.++...+. ..
T Consensus 98 ~~~~---~~Fs~~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~ 174 (265)
T cd05476 98 GSTG---NKFSYCLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSD 174 (265)
T ss_pred hccc---CeeEEEccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccC
Confidence 9887 8999999874 35689999999996 89999999864 57999999999999998865433221 23
Q ss_pred CCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEEEecCCcEEEecCCceEEE
Q 011139 308 NNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVLKPEEYLIH 387 (492)
Q Consensus 308 ~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg~~~~l~p~~yi~~ 387 (492)
....+||||||+++++|++++ |+|+|+|+++.++.+++++|+.+
T Consensus 175 ~~~~ai~DTGTs~~~lp~~~~------------------------------------P~i~~~f~~~~~~~i~~~~y~~~ 218 (265)
T cd05476 175 GSGGTIIDSGTTLTYLPDPAY------------------------------------PDLTLHFDGGADLELPPENYFVD 218 (265)
T ss_pred CCCcEEEeCCCcceEcCcccc------------------------------------CCEEEEECCCCEEEeCcccEEEE
Confidence 467899999999999999876 88999996589999999999985
Q ss_pred eeeeCCceEEEEEEEecC-CCceeeCceeeecEEEEEECCCCEEEEEeCCC
Q 011139 388 LGFYDGAAMWCIGFEKSP-GGVSILGDLVLKDKIFVYDLARQRVGWANYDC 437 (492)
Q Consensus 388 ~~~~~~~~~c~l~i~~~~-~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~c 437 (492)
. ....+|+++.... .+.||||++|||++|+|||++++|||||+++|
T Consensus 219 ~----~~~~~C~~~~~~~~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 219 V----GEGVVCLAILSSSSGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred C----CCCCEEEEEecCCCCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 3 2344678888763 67899999999999999999999999999999
No 21
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=1.4e-49 Score=391.48 Aligned_cols=272 Identities=27% Similarity=0.473 Sum_probs=233.2
Q ss_pred eEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCCCCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCCCCCCCCC
Q 011139 78 LYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQCPS 157 (492)
Q Consensus 78 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~c~~ 157 (492)
.|+++|+||||+|++.|++||||+++||+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~--------------------------------------------------- 30 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP--------------------------------------------------- 30 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee---------------------------------------------------
Confidence 79999999999999999999999999996
Q ss_pred CCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCC------
Q 011139 158 GSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDL------ 231 (492)
Q Consensus 158 ~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~------ 231 (492)
.|++.|++|+.+.|.+++|+|++++.. +.++.|||+.... ..+||||||++..
T Consensus 31 -----~~~~~Y~~g~~~~G~~~~D~v~~g~~~--------~~~~~fg~~~~~~--------~~~GilGLg~~~~~~~~~~ 89 (295)
T cd05474 31 -----DFSISYGDGTSASGTWGTDTVSIGGAT--------VKNLQFAVANSTS--------SDVGVLGIGLPGNEATYGT 89 (295)
T ss_pred -----eeEEEeccCCcEEEEEEEEEEEECCeE--------ecceEEEEEecCC--------CCcceeeECCCCCcccccC
Confidence 357789998779999999999998654 6689999998742 4589999999775
Q ss_pred -----hHHHHhhhcCCCC-ceeEEeecCCCCCcceEEECCCCC----CCeEEeeCCCCC-----CcceEEEeEEEEccEE
Q 011139 232 -----SVISQLASRGITP-RVFSHCLKGQGNGGGILVLGEILE----PSIVYSPLVPSK-----PHYNLNLHGITVNGQL 296 (492)
Q Consensus 232 -----s~~~~l~~~g~i~-~~FS~~l~~~~~~~G~l~fGg~d~----~~l~~~p~~~~~-----~~~~v~l~~i~v~g~~ 296 (492)
+++++|++||+|+ ++||+||++.+...|.|+|||+|+ +++.|+|+.... .+|.|++++|.++++.
T Consensus 90 ~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~ 169 (295)
T cd05474 90 GYTYPNFPIALKKQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSS 169 (295)
T ss_pred CCcCCCHHHHHHHCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCC
Confidence 6999999999996 799999998655689999999984 679999998643 6899999999999987
Q ss_pred eecCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEEEecCCcE
Q 011139 297 LSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGAS 376 (492)
Q Consensus 297 ~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg~~ 376 (492)
++.+. ......++|||||++++||++++++|.+++.+... ...+.|.++|..... |+|+|+| +|++
T Consensus 170 ~~~~~----~~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~--------~~~~~~~~~C~~~~~-p~i~f~f-~g~~ 235 (295)
T cd05474 170 GNTTL----LSKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYD--------SDEGLYVVDCDAKDD-GSLTFNF-GGAT 235 (295)
T ss_pred Ccccc----cCCCccEEECCCCccEeCCHHHHHHHHHHhCCEEc--------CCCcEEEEeCCCCCC-CEEEEEE-CCeE
Confidence 64311 23567899999999999999999999999987642 225679999997766 9999999 6799
Q ss_pred EEecCCceEEEeee-eCCceEEEEEEEecCCCceeeCceeeecEEEEEECCCCEEEEEeC
Q 011139 377 MVLKPEEYLIHLGF-YDGAAMWCIGFEKSPGGVSILGDLVLKDKIFVYDLARQRVGWANY 435 (492)
Q Consensus 377 ~~l~p~~yi~~~~~-~~~~~~c~l~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfa~~ 435 (492)
++||+++|+++... ......|+++|++.+.+.||||++|||++|+|||.+++|||||++
T Consensus 236 ~~i~~~~~~~~~~~~~~~~~~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 236 ISVPLSDLVLPASTDDGGDGACYLGIQPSTSDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred EEEEHHHhEeccccCCCCCCCeEEEEEeCCCCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 99999999987532 123567989999876578999999999999999999999999986
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=4.2e-50 Score=399.14 Aligned_cols=298 Identities=30% Similarity=0.568 Sum_probs=253.1
Q ss_pred eEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCCCC---CCCCCCCcCCCCccCCCCCcCceecCCCccccCccCCCCCC
Q 011139 78 LYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNC---PQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQ 154 (492)
Q Consensus 78 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~C---~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~ 154 (492)
.|+++|+||||+|+++|++||||+++||++..|..| ... ..|+++.|+|++..
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~-------~~y~~~~S~t~~~~----------------- 56 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASS-------GFYNPSKSSTFSNQ----------------- 56 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTS-------C-BBGGGSTTEEEE-----------------
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccc-------cccccccccccccc-----------------
Confidence 599999999999999999999999999999999876 433 89999999998643
Q ss_pred CCCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCC-----
Q 011139 155 CPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQG----- 229 (492)
Q Consensus 155 c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~----- 229 (492)
.+.+.+.|++|+ ++|.+++|+|+|++.. ..++.||++....+.. ......+||||||++
T Consensus 57 ------~~~~~~~y~~g~-~~G~~~~D~v~ig~~~--------~~~~~f~~~~~~~~~~-~~~~~~~GilGLg~~~~~~~ 120 (317)
T PF00026_consen 57 ------GKPFSISYGDGS-VSGNLVSDTVSIGGLT--------IPNQTFGLADSYSGDP-FSPIPFDGILGLGFPSLSSS 120 (317)
T ss_dssp ------EEEEEEEETTEE-EEEEEEEEEEEETTEE--------EEEEEEEEEEEEESHH-HHHSSSSEEEE-SSGGGSGG
T ss_pred ------eeeeeeeccCcc-cccccccceEeeeecc--------ccccceeccccccccc-cccccccccccccCCccccc
Confidence 467999999999 9999999999999765 6679999999864431 123467999999974
Q ss_pred --CChHHHHhhhcCCCC-ceeEEeecCCCCCcceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEccEEeecCcc
Q 011139 230 --DLSVISQLASRGITP-RVFSHCLKGQGNGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPS 302 (492)
Q Consensus 230 --~~s~~~~l~~~g~i~-~~FS~~l~~~~~~~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~g~~~~~~~~ 302 (492)
..+++++|+++|+|+ ++||+||++.+...|.|+|||+|+ ++++|+|+. ...+|.+.+++|.++++....
T Consensus 121 ~~~~~~~~~l~~~g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~-~~~~w~v~~~~i~i~~~~~~~--- 196 (317)
T PF00026_consen 121 STYPTFLDQLVQQGLISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLV-SSGYWSVPLDSISIGGESVFS--- 196 (317)
T ss_dssp GTS-SHHHHHHHTTSSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBS-STTTTEEEEEEEEETTEEEEE---
T ss_pred ccCCcceecchhhccccccccceeeeecccccchheeeccccccccCceeccCcc-ccccccccccccccccccccc---
Confidence 346999999999996 899999998766789999999984 689999998 788999999999999983211
Q ss_pred cccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEEEecCCcEEEecCC
Q 011139 303 AFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVLKPE 382 (492)
Q Consensus 303 ~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg~~~~l~p~ 382 (492)
.....++||||++++++|++++++|++.+...... ..|.++|+....+|.|+|+| ++.+++|+|+
T Consensus 197 ----~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~----------~~~~~~c~~~~~~p~l~f~~-~~~~~~i~~~ 261 (317)
T PF00026_consen 197 ----SSGQQAILDTGTSYIYLPRSIFDAIIKALGGSYSD----------GVYSVPCNSTDSLPDLTFTF-GGVTFTIPPS 261 (317)
T ss_dssp ----EEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEEEC----------SEEEEETTGGGGSEEEEEEE-TTEEEEEEHH
T ss_pred ----ccceeeecccccccccccchhhHHHHhhhcccccc----------eeEEEecccccccceEEEee-CCEEEEecch
Confidence 22346999999999999999999999999887532 78999999888899999999 7899999999
Q ss_pred ceEEEeeeeCCceEEEEEEEe---c-CCCceeeCceeeecEEEEEECCCCEEEEEeC
Q 011139 383 EYLIHLGFYDGAAMWCIGFEK---S-PGGVSILGDLVLKDKIFVYDLARQRVGWANY 435 (492)
Q Consensus 383 ~yi~~~~~~~~~~~c~l~i~~---~-~~~~~iLG~~fl~~~y~vfD~~~~~igfa~~ 435 (492)
+|+.+... .....|+++|+. . ....+|||.+|||++|+|||++++|||||+|
T Consensus 262 ~~~~~~~~-~~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 262 DYIFKIED-GNGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp HHEEEESS-TTSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred Hhcccccc-cccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 99988653 233479999998 2 2678999999999999999999999999986
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=1.2e-45 Score=360.92 Aligned_cols=269 Identities=36% Similarity=0.677 Sum_probs=229.5
Q ss_pred EEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCCCCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCCCCCCCCCC
Q 011139 79 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQCPSG 158 (492)
Q Consensus 79 Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~c~~~ 158 (492)
|+++|.||+|+|++.|++||||+++||+|..|..|..+.. ....|++..|+++.
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~---~~~~~~~~~s~~~~----------------------- 54 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKH---PRFKYDSSKSSTYK----------------------- 54 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccC---CCCccCccCCceee-----------------------
Confidence 7899999999999999999999999999999988765421 01126777776663
Q ss_pred CCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCC------Ch
Q 011139 159 SNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGD------LS 232 (492)
Q Consensus 159 ~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~------~s 232 (492)
+..|.|++.|++|+ +.|.+++|+|+|++.. ..++.|||+....+.+ .....+||||||+.. .+
T Consensus 55 ~~~~~~~~~Y~~g~-~~g~~~~D~v~~~~~~--------~~~~~fg~~~~~~~~~--~~~~~~GilGLg~~~~~~~~~~s 123 (283)
T cd05471 55 DTGCTFSITYGDGS-VTGGLGTDTVTIGGLT--------IPNQTFGCATSESGDF--SSSGFDGILGLGFPSLSVDGVPS 123 (283)
T ss_pred cCCCEEEEEECCCe-EEEEEEEeEEEECCEE--------EeceEEEEEeccCCcc--cccccceEeecCCcccccccCCC
Confidence 56799999999987 7999999999999754 6789999999887632 345789999999988 78
Q ss_pred HHHHhhhcCCCC-ceeEEeecCC--CCCcceEEECCCCC----CCeEEeeCCCC-CCcceEEEeEEEEccEEeecCcccc
Q 011139 233 VISQLASRGITP-RVFSHCLKGQ--GNGGGILVLGEILE----PSIVYSPLVPS-KPHYNLNLHGITVNGQLLSIDPSAF 304 (492)
Q Consensus 233 ~~~~l~~~g~i~-~~FS~~l~~~--~~~~G~l~fGg~d~----~~l~~~p~~~~-~~~~~v~l~~i~v~g~~~~~~~~~~ 304 (492)
++++|.++++|+ ++||+||.+. ....|.|+|||+|+ +++.|+|+... ..+|.|.+++|.|+++.. .
T Consensus 124 ~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~------~ 197 (283)
T cd05471 124 FFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSV------I 197 (283)
T ss_pred HHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCcee------e
Confidence 999999999885 8999999985 35689999999995 78999999965 779999999999998741 1
Q ss_pred cccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEEEecCCcEEEecCCce
Q 011139 305 AASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVLKPEEY 384 (492)
Q Consensus 305 ~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg~~~~l~p~~y 384 (492)
.......++|||||++++||+++++++.+++.+.... ...|+..+|.....+|+|+|+|
T Consensus 198 ~~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~p~i~f~f------------- 256 (283)
T cd05471 198 SSSGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVSS--------SDGGYGVDCSPCDTLPDITFTF------------- 256 (283)
T ss_pred ecCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCcccc--------cCCcEEEeCcccCcCCCEEEEE-------------
Confidence 1235678999999999999999999999999887532 4567888898889999999999
Q ss_pred EEEeeeeCCceEEEEEEEecCCCceeeCceeeecEEEEEECCCCEEEEEe
Q 011139 385 LIHLGFYDGAAMWCIGFEKSPGGVSILGDLVLKDKIFVYDLARQRVGWAN 434 (492)
Q Consensus 385 i~~~~~~~~~~~c~l~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfa~ 434 (492)
.+|||++|||++|++||+++++||||+
T Consensus 257 -----------------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 -----------------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred -----------------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 589999999999999999999999985
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.96 E-value=2.3e-29 Score=224.56 Aligned_cols=163 Identities=44% Similarity=0.774 Sum_probs=132.2
Q ss_pred EEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCCCCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCCCCCCCCCC
Q 011139 79 YFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQCPSG 158 (492)
Q Consensus 79 Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~c~~~ 158 (492)
|+++|.||||+|++.|++||||+.+|++|. .+.|+|++|+||+.+.|+++.|...... ...|...
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C~--------------~~~f~~~~Sst~~~v~C~s~~C~~~~~~-~~~~~~~ 65 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQCP--------------DPPFDPSKSSTYRPVPCSSPQCSSAPSF-CPCCCCS 65 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET------------------STT-TTSSBEC-BTTSHHHHHCTSS-BTCCTCE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcCC--------------CcccCCccCCcccccCCCCcchhhcccc-cccCCCC
Confidence 899999999999999999999999999981 3899999999999999999999865443 3445555
Q ss_pred CCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCChHHHHhh
Q 011139 159 SNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDLSVISQLA 238 (492)
Q Consensus 159 ~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~l~ 238 (492)
+..|.|.+.|++++.+.|.+++|++.++...++. ....++.|||+....+.+ ...+||||||+.+.||+.||.
T Consensus 66 ~~~C~y~~~y~~~s~~~G~l~~D~~~~~~~~~~~---~~~~~~~FGC~~~~~g~~----~~~~GilGLg~~~~Sl~sQl~ 138 (164)
T PF14543_consen 66 NNSCPYSQSYGDGSSSSGFLASDTLTFGSSSGGS---NSVPDFIFGCATSNSGLF----YGADGILGLGRGPLSLPSQLA 138 (164)
T ss_dssp SSEEEEEEEETTTEEEEEEEEEEEEEEEEESSSS---EEEEEEEEEEE-GGGTSS----TTEEEEEE-SSSTTSHHHHHH
T ss_pred cCcccceeecCCCccccCceEEEEEEecCCCCCC---ceeeeEEEEeeeccccCC----cCCCcccccCCCcccHHHHHH
Confidence 7899999999999999999999999999764332 236789999999998764 378999999999999999998
Q ss_pred hcCCCCceeEEeecC-CCCCcceEEECC
Q 011139 239 SRGITPRVFSHCLKG-QGNGGGILVLGE 265 (492)
Q Consensus 239 ~~g~i~~~FS~~l~~-~~~~~G~l~fGg 265 (492)
++ ..++||+||.+ +....|.|+||+
T Consensus 139 ~~--~~~~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 139 SS--SGNKFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp HH----SEEEEEB-S-SSSSEEEEEECS
T ss_pred Hh--cCCeEEEECCCCCCCCCEEEEeCc
Confidence 88 55899999998 556789999995
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.90 E-value=2.1e-23 Score=185.94 Aligned_cols=149 Identities=38% Similarity=0.702 Sum_probs=119.7
Q ss_pred cceEEEeEEEEccEEeecCcccccc-cCCCcEEEecccccccccHHHHHHHHHHHHHHhccCC----CCCCCCCCceEEe
Q 011139 282 HYNLNLHGITVNGQLLSIDPSAFAA-SNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSV----TPTMSKGKQCYLV 356 (492)
Q Consensus 282 ~~~v~l~~i~v~g~~~~~~~~~~~~-~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~----~~~~~~~~~~y~v 356 (492)
+|.|+|.+|+|+++.++++...++. .....++|||||++++||+++|+++++++.+++.... .......+.||..
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 5899999999999999998877642 3457899999999999999999999999999987753 1234567899999
Q ss_pred cC----CCcccCCeEEEEecCCcEEEecCCceEEEeeeeCCceEEEEEEEec---CCCceeeCceeeecEEEEEECCCCE
Q 011139 357 SN----SVSEIFPQVSLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFEKS---PGGVSILGDLVLKDKIFVYDLARQR 429 (492)
Q Consensus 357 ~c----~~~~~~p~i~f~f~gg~~~~l~p~~yi~~~~~~~~~~~c~l~i~~~---~~~~~iLG~~fl~~~y~vfD~~~~~ 429 (492)
+. .....+|+|+|+|.||++++|+|++|+++.. ++..|++|.+. ..+..|||..+|++++++||++++|
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~----~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~ 156 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVS----PGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGR 156 (161)
T ss_dssp GCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEEC----TTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTE
T ss_pred cccccccccccCCeEEEEEeCCcceeeeccceeeecc----CCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCE
Confidence 87 3557999999999989999999999999863 45899999998 3788999999999999999999999
Q ss_pred EEEEe
Q 011139 430 VGWAN 434 (492)
Q Consensus 430 igfa~ 434 (492)
|||++
T Consensus 157 igF~~ 161 (161)
T PF14541_consen 157 IGFAP 161 (161)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 99986
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.87 E-value=9.4e-22 Score=163.68 Aligned_cols=108 Identities=38% Similarity=0.657 Sum_probs=90.6
Q ss_pred EEEEeCCCCcEEEEEEecCCCeeEEeCCCCCCCCCCCCCCcCCCCc-cCCCCCcCceecCCCccccCccCCCCCCCCCCC
Q 011139 81 TKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFF-DTSSSSTARIVSCSDPLCASEIQTTATQCPSGS 159 (492)
Q Consensus 81 ~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y-~~~~SsT~~~v~C~~~~C~~~~~~~~~~c~~~~ 159 (492)
++|.||||+|++.|+|||||+++||+|..|..|..+. .+.| +|+.|++++ .
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~-----~~~~~~~~~sst~~-----------------------~ 52 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYS-----HSSYDDPSASSTYS-----------------------D 52 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCccccc-----ccccCCcCCCCCCC-----------------------C
Confidence 4799999999999999999999999999998776441 2455 999999985 3
Q ss_pred CCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeec
Q 011139 160 NQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGF 226 (492)
Q Consensus 160 ~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGL 226 (492)
..|.|.+.|++|+ +.|.+++|+|+|++.. ..++.|||+....+.+. .....+|||||
T Consensus 53 ~~~~~~~~Y~~g~-~~g~~~~D~v~ig~~~--------~~~~~fg~~~~~~~~~~-~~~~~~GilGL 109 (109)
T cd05470 53 NGCTFSITYGTGS-LSGGLSTDTVSIGDIE--------VVGQAFGCATDEPGATF-LPALFDGILGL 109 (109)
T ss_pred CCcEEEEEeCCCe-EEEEEEEEEEEECCEE--------ECCEEEEEEEecCCccc-cccccccccCC
Confidence 5689999999997 7899999999998754 67899999999877542 23578999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.06 E-value=1.2e-05 Score=64.57 Aligned_cols=93 Identities=12% Similarity=0.123 Sum_probs=61.6
Q ss_pred eEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCCCCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCCCCCCCCC
Q 011139 78 LYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQCPS 157 (492)
Q Consensus 78 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~c~~ 157 (492)
.|++++.|+. +++++++|||++.+|+.......+...
T Consensus 2 ~~~v~v~i~~--~~~~~llDTGa~~s~i~~~~~~~l~~~----------------------------------------- 38 (96)
T cd05483 2 HFVVPVTING--QPVRFLLDTGASTTVISEELAERLGLP----------------------------------------- 38 (96)
T ss_pred cEEEEEEECC--EEEEEEEECCCCcEEcCHHHHHHcCCC-----------------------------------------
Confidence 6899999995 999999999999999976421111100
Q ss_pred CCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCC
Q 011139 158 GSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQ 228 (492)
Q Consensus 158 ~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~ 228 (492)
........+...+|.........+.+++++.. ..++.+........ ..+||||+.+
T Consensus 39 ~~~~~~~~~~~~~G~~~~~~~~~~~i~ig~~~--------~~~~~~~v~d~~~~-------~~~gIlG~d~ 94 (96)
T cd05483 39 LTLGGKVTVQTANGRVRAARVRLDSLQIGGIT--------LRNVPAVVLPGDAL-------GVDGLLGMDF 94 (96)
T ss_pred ccCCCcEEEEecCCCccceEEEcceEEECCcE--------EeccEEEEeCCccc-------CCceEeChHH
Confidence 01224556777777765666668889998654 34455555433221 4689999853
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=96.31 E-value=0.018 Score=48.32 Aligned_cols=30 Identities=13% Similarity=0.335 Sum_probs=27.0
Q ss_pred ceeEEEEEEeCCCCcEEEEEEecCCCeeEEeC
Q 011139 76 IGLYFTKVKLGSPPKEFNVQIDTGSDILWVTC 107 (492)
Q Consensus 76 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~ 107 (492)
+|.|++++.|.. +++.+++|||++.+-++.
T Consensus 9 ~g~~~v~~~InG--~~~~flVDTGAs~t~is~ 38 (121)
T TIGR02281 9 DGHFYATGRVNG--RNVRFLVDTGATSVALNE 38 (121)
T ss_pred CCeEEEEEEECC--EEEEEEEECCCCcEEcCH
Confidence 489999999987 899999999999998865
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=95.77 E-value=0.074 Score=41.56 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=21.3
Q ss_pred EEEEeCCCCcEEEEEEecCCCeeEEeCC
Q 011139 81 TKVKLGSPPKEFNVQIDTGSDILWVTCS 108 (492)
Q Consensus 81 ~~i~iGtP~q~~~v~~DTGSs~~wv~~~ 108 (492)
+++.|+. +++++++|||++.+.+...
T Consensus 1 V~v~vng--~~~~~liDTGa~~~~i~~~ 26 (90)
T PF13650_consen 1 VPVKVNG--KPVRFLIDTGASISVISRS 26 (90)
T ss_pred CEEEECC--EEEEEEEcCCCCcEEECHH
Confidence 3577876 8999999999998888654
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.89 E-value=0.2 Score=42.23 Aligned_cols=27 Identities=22% Similarity=0.135 Sum_probs=23.7
Q ss_pred CCceeeCceeeecEEEEEECCCCEEEE
Q 011139 406 GGVSILGDLVLKDKIFVYDLARQRVGW 432 (492)
Q Consensus 406 ~~~~iLG~~fl~~~y~vfD~~~~~igf 432 (492)
....|||..||+.+-.+.|+.+.+|-+
T Consensus 98 ~~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 98 DVDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred CcCEEecHHHHHhCCeEEECCCCEEEC
Confidence 446899999999999999999998853
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.58 E-value=0.62 Score=39.21 Aligned_cols=30 Identities=10% Similarity=0.330 Sum_probs=26.9
Q ss_pred eeEEEEEEeCCCCcEEEEEEecCCCeeEEeCC
Q 011139 77 GLYFTKVKLGSPPKEFNVQIDTGSDILWVTCS 108 (492)
Q Consensus 77 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~ 108 (492)
..+++++.|+. +++.+++|||++..++...
T Consensus 15 ~~~~v~~~Ing--~~~~~LvDTGAs~s~Is~~ 44 (124)
T cd05479 15 PMLYINVEING--VPVKAFVDSGAQMTIMSKA 44 (124)
T ss_pred eEEEEEEEECC--EEEEEEEeCCCceEEeCHH
Confidence 57899999997 8999999999999999754
No 32
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=92.24 E-value=0.18 Score=39.82 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=25.3
Q ss_pred EEEEEEeCCCCcEEEEEEecCCCeeEEeCC
Q 011139 79 YFTKVKLGSPPKEFNVQIDTGSDILWVTCS 108 (492)
Q Consensus 79 Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~ 108 (492)
|++++.|+. +++.+++||||+..++..+
T Consensus 1 ~~~~~~Ing--~~i~~lvDTGA~~svis~~ 28 (91)
T cd05484 1 KTVTLLVNG--KPLKFQLDTGSAITVISEK 28 (91)
T ss_pred CEEEEEECC--EEEEEEEcCCcceEEeCHH
Confidence 578999998 9999999999999999764
No 33
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=90.72 E-value=1.8 Score=37.03 Aligned_cols=29 Identities=34% Similarity=0.256 Sum_probs=26.0
Q ss_pred CCceeeCceeeecEEEEEECCCCEEEEEe
Q 011139 406 GGVSILGDLVLKDKIFVYDLARQRVGWAN 434 (492)
Q Consensus 406 ~~~~iLG~~fl~~~y~vfD~~~~~igfa~ 434 (492)
.-..|||.++|+.+..+-|..+++|.|-.
T Consensus 103 ~~DvILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 103 GYDVILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred ceeeEeccchHHhCCCEEEccCCEEEEeC
Confidence 34589999999999999999999999864
No 34
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=88.71 E-value=0.8 Score=34.41 Aligned_cols=33 Identities=24% Similarity=0.441 Sum_probs=29.1
Q ss_pred ceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCC
Q 011139 76 IGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSC 110 (492)
Q Consensus 76 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C 110 (492)
.+.+++++.||. +.+..++|||++...|+..-+
T Consensus 6 ~g~~~v~~~I~g--~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 6 PGLMYVPVSIGG--VQVKALVDTGATHNFISESLA 38 (72)
T ss_pred CCEEEEEEEECC--EEEEEEEeCCCcceecCHHHH
Confidence 479999999999 999999999999998876543
No 35
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=87.09 E-value=4.3 Score=31.55 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=20.8
Q ss_pred EEEeCCCCcEEEEEEecCCCeeEEeCC
Q 011139 82 KVKLGSPPKEFNVQIDTGSDILWVTCS 108 (492)
Q Consensus 82 ~i~iGtP~q~~~v~~DTGSs~~wv~~~ 108 (492)
.+.|.. +++.+++|||++.+-+...
T Consensus 2 ~v~InG--~~~~fLvDTGA~~tii~~~ 26 (86)
T cd06095 2 TITVEG--VPIVFLVDTGATHSVLKSD 26 (86)
T ss_pred EEEECC--EEEEEEEECCCCeEEECHH
Confidence 356666 8999999999999999764
No 36
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=83.70 E-value=1.6 Score=34.89 Aligned_cols=27 Identities=26% Similarity=0.529 Sum_probs=23.5
Q ss_pred EEEEEeCCCCcEEEEEEecCCCeeEEeCC
Q 011139 80 FTKVKLGSPPKEFNVQIDTGSDILWVTCS 108 (492)
Q Consensus 80 ~~~i~iGtP~q~~~v~~DTGSs~~wv~~~ 108 (492)
+.+|.|.. +++.+++||||+.+-++.+
T Consensus 7 ~i~v~i~g--~~i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 7 YITVKING--KKIKALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEEETT--EEEEEEEETTBSSEEESSG
T ss_pred eEEEeECC--EEEEEEEecCCCcceeccc
Confidence 46788888 8999999999999988764
No 37
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=81.27 E-value=2.7 Score=34.36 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=20.8
Q ss_pred CceeeCceeeecEEEEEECCCCEE
Q 011139 407 GVSILGDLVLKDKIFVYDLARQRV 430 (492)
Q Consensus 407 ~~~iLG~~fl~~~y~vfD~~~~~i 430 (492)
+..+||..||+.+-++.|+.++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 478999999999999999887653
No 38
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=78.33 E-value=4.1 Score=34.07 Aligned_cols=36 Identities=31% Similarity=0.387 Sum_probs=26.9
Q ss_pred CCcceEEEeEEEEccEEeecCcccccccCCCcEEEecccccccccHHHHHHH
Q 011139 280 KPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPF 331 (492)
Q Consensus 280 ~~~~~v~l~~i~v~g~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i 331 (492)
.++|.++ +.|||+.+ .+++|||.+.+.++.+..+++
T Consensus 9 ~g~~~v~---~~InG~~~-------------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGRNV-------------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCEEE-------------EEEEECCCCcEEcCHHHHHHc
Confidence 3566544 66788765 389999999999999876553
No 39
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=77.73 E-value=19 Score=32.82 Aligned_cols=73 Identities=14% Similarity=0.167 Sum_probs=51.8
Q ss_pred cceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCCCCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCCCCCC
Q 011139 75 LIGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQ 154 (492)
Q Consensus 75 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~ 154 (492)
.+|.|.++..|-. |++..++|||-+..-++...-. .-.+|.+
T Consensus 102 ~~GHF~a~~~VNG--k~v~fLVDTGATsVal~~~dA~-----------RlGid~~------------------------- 143 (215)
T COG3577 102 RDGHFEANGRVNG--KKVDFLVDTGATSVALNEEDAR-----------RLGIDLN------------------------- 143 (215)
T ss_pred CCCcEEEEEEECC--EEEEEEEecCcceeecCHHHHH-----------HhCCCcc-------------------------
Confidence 3589999999988 9999999999998888654210 1223332
Q ss_pred CCCCCCCCeeeeeeCCCCeeEEEEEEEEEEecccc
Q 011139 155 CPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAIL 189 (492)
Q Consensus 155 c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~ 189 (492)
..+.++.+.-.+|......+-.|.|.||++.
T Consensus 144 ----~l~y~~~v~TANG~~~AA~V~Ld~v~IG~I~ 174 (215)
T COG3577 144 ----SLDYTITVSTANGRARAAPVTLDRVQIGGIR 174 (215)
T ss_pred ----ccCCceEEEccCCccccceEEeeeEEEccEE
Confidence 1234666777788755556778999999765
No 40
>PF13650 Asp_protease_2: Aspartyl protease
Probab=77.59 E-value=3 Score=32.17 Aligned_cols=29 Identities=17% Similarity=0.472 Sum_probs=23.1
Q ss_pred EEEccEEeecCcccccccCCCcEEEecccccccccHHHHHHH
Q 011139 290 ITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPF 331 (492)
Q Consensus 290 i~v~g~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i 331 (492)
+.|||+.+ .++||||.+.+.+.++.++++
T Consensus 3 v~vng~~~-------------~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV-------------RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE-------------EEEEcCCCCcEEECHHHHHHc
Confidence 56777654 489999999999999876554
No 41
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=74.48 E-value=17 Score=28.54 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=17.9
Q ss_pred cCCCcEEEecccccccccHHHH
Q 011139 307 SNNRETIVDSGTTLTYLVEEAF 328 (492)
Q Consensus 307 ~~~~~~iiDSGtt~~~lp~~~~ 328 (492)
.++...++|||...+.+|....
T Consensus 7 ~s~~~fLVDTGA~vSviP~~~~ 28 (89)
T cd06094 7 TSGLRFLVDTGAAVSVLPASST 28 (89)
T ss_pred CCCcEEEEeCCCceEeeccccc
Confidence 3456789999999999998643
No 42
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=72.88 E-value=5.7 Score=29.71 Aligned_cols=29 Identities=21% Similarity=0.515 Sum_probs=23.5
Q ss_pred EEEccEEeecCcccccccCCCcEEEecccccccccHHHHHHH
Q 011139 290 ITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPF 331 (492)
Q Consensus 290 i~v~g~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i 331 (492)
+.|+|..+ .+++|||.+..+++.+.++.+
T Consensus 13 ~~I~g~~~-------------~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQV-------------KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEE-------------EEEEeCCCcceecCHHHHHHh
Confidence 56777665 389999999999999886665
No 43
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=70.93 E-value=5.6 Score=31.10 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=21.1
Q ss_pred EEEeCCCCcEEEEEEecCCCeeEEeCC
Q 011139 82 KVKLGSPPKEFNVQIDTGSDILWVTCS 108 (492)
Q Consensus 82 ~i~iGtP~q~~~v~~DTGSs~~wv~~~ 108 (492)
.+.|+. |.+.+++|||.+++-+...
T Consensus 2 ~~~i~g--~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYING--KLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEECC--EEEEEEEccCCCCeEEccc
Confidence 366775 9999999999999999753
No 44
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=69.81 E-value=6.7 Score=30.69 Aligned_cols=30 Identities=27% Similarity=0.526 Sum_probs=24.5
Q ss_pred EEEEccEEeecCcccccccCCCcEEEecccccccccHHHHHHH
Q 011139 289 GITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPF 331 (492)
Q Consensus 289 ~i~v~g~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i 331 (492)
.+.|||+.+ .+.+|||++.+.++++.+..+
T Consensus 4 ~~~Ing~~i-------------~~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPL-------------KFQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEE-------------EEEEcCCcceEEeCHHHHHHh
Confidence 367888876 379999999999999877654
No 45
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=66.48 E-value=10 Score=29.47 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=23.4
Q ss_pred EEEEccEEeecCcccccccCCCcEEEecccccccccHHHHHHH
Q 011139 289 GITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPF 331 (492)
Q Consensus 289 ~i~v~g~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i 331 (492)
.+.+|++.+ .++||||++.+.++.+..+++
T Consensus 6 ~v~i~~~~~-------------~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPV-------------RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEE-------------EEEEECCCCcEEcCHHHHHHc
Confidence 366777665 489999999999999876554
No 46
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=65.91 E-value=40 Score=33.70 Aligned_cols=58 Identities=22% Similarity=0.303 Sum_probs=33.5
Q ss_pred eeCCCCeeEEEEEEEEEEeccccCCcccccccccEEE----------eeeeeccCCCCCCCCCcceeeecCCCC
Q 011139 167 EYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVF----------GCSTYQTGDLSKTDKAIDGIFGFGQGD 230 (492)
Q Consensus 167 ~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~f----------g~~~~~~~~~~~~~~~~~GIlGLg~~~ 230 (492)
.|.+|. +.|-+-+-.|+|++..... ++-|.+ .|.......-.-.....+||||+|.-.
T Consensus 83 ~F~sgy-tWGsVr~AdV~igge~A~~-----iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~ 150 (370)
T PF11925_consen 83 QFASGY-TWGSVRTADVTIGGETASS-----IPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFP 150 (370)
T ss_pred hccCcc-cccceEEEEEEEcCeeccc-----cCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCc
Confidence 467776 6799999999999764332 222222 222222111112244679999999753
No 47
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=65.38 E-value=23 Score=31.05 Aligned_cols=23 Identities=13% Similarity=0.397 Sum_probs=18.8
Q ss_pred CcEEEecccccccccHHHHHHHH
Q 011139 310 RETIVDSGTTLTYLVEEAFDPFV 332 (492)
Q Consensus 310 ~~~iiDSGtt~~~lp~~~~~~i~ 332 (492)
..++||||++.+..-.++.+.+-
T Consensus 46 i~vLfDSGSPTSfIr~di~~kL~ 68 (177)
T PF12384_consen 46 IKVLFDSGSPTSFIRSDIVEKLE 68 (177)
T ss_pred EEEEEeCCCccceeehhhHHhhC
Confidence 45899999999999998766543
No 48
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=62.56 E-value=9.5 Score=29.56 Aligned_cols=29 Identities=31% Similarity=0.321 Sum_probs=23.8
Q ss_pred EEEccEEeecCcccccccCCCcEEEecccccccccHHHHHHH
Q 011139 290 ITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPF 331 (492)
Q Consensus 290 i~v~g~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i 331 (492)
+.|||+.+ .+++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~-------------~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPI-------------VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEE-------------EEEEECCCCeEEECHHHhhhc
Confidence 56777765 379999999999999887664
No 49
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=51.72 E-value=11 Score=29.78 Aligned_cols=26 Identities=19% Similarity=0.597 Sum_probs=20.5
Q ss_pred EEEEccEEeecCcccccccCCCcEEEecccccccccHHH
Q 011139 289 GITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEA 327 (492)
Q Consensus 289 ~i~v~g~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~ 327 (492)
.|.++|+.+ .++||||...+.++.+.
T Consensus 9 ~v~i~g~~i-------------~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 9 TVKINGKKI-------------KALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEETTEEE-------------EEEEETTBSSEEESSGG
T ss_pred EEeECCEEE-------------EEEEecCCCcceecccc
Confidence 356677765 38999999999999863
No 50
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=51.11 E-value=65 Score=26.13 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=19.8
Q ss_pred EEEEeCCCC----cEEEEEEecCCCeeE-Ee
Q 011139 81 TKVKLGSPP----KEFNVQIDTGSDILW-VT 106 (492)
Q Consensus 81 ~~i~iGtP~----q~~~v~~DTGSs~~w-v~ 106 (492)
+++.|..|. -++.+++|||-+..- ++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~ 32 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVP 32 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecC
Confidence 578888873 268999999998664 54
No 51
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=48.87 E-value=23 Score=31.08 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=22.8
Q ss_pred EEEEEeCCCCcEEEEEEecCCCeeEEeCC
Q 011139 80 FTKVKLGSPPKEFNVQIDTGSDILWVTCS 108 (492)
Q Consensus 80 ~~~i~iGtP~q~~~v~~DTGSs~~wv~~~ 108 (492)
..++.++.-..+++++|||||..-.+...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 34555666669999999999999888764
No 52
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=46.57 E-value=37 Score=31.03 Aligned_cols=35 Identities=34% Similarity=0.437 Sum_probs=27.7
Q ss_pred CCCcceEEEeEEEEccEEeecCcccccccCCCcEEEecccccccccHHHHH
Q 011139 279 SKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFD 329 (492)
Q Consensus 279 ~~~~~~v~l~~i~v~g~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~ 329 (492)
.++||.++ ..|||+.+. .++|||.|.+.++++...
T Consensus 102 ~~GHF~a~---~~VNGk~v~-------------fLVDTGATsVal~~~dA~ 136 (215)
T COG3577 102 RDGHFEAN---GRVNGKKVD-------------FLVDTGATSVALNEEDAR 136 (215)
T ss_pred CCCcEEEE---EEECCEEEE-------------EEEecCcceeecCHHHHH
Confidence 35677655 678998873 799999999999998643
No 53
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=46.20 E-value=13 Score=29.66 Aligned_cols=30 Identities=13% Similarity=0.092 Sum_probs=17.6
Q ss_pred CCchhhhhcccchhhHHHHHHHHHhhhhccc
Q 011139 461 SSSSIEMLFKVLPLSILALFLHSLSFMEFQF 491 (492)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (492)
++.+++++++++...+++ +..|+.|+.|+|
T Consensus 61 ~~ls~gaiagi~vg~~~~-v~~lv~~l~w~f 90 (96)
T PTZ00382 61 SGLSTGAIAGISVAVVAV-VGGLVGFLCWWF 90 (96)
T ss_pred CCcccccEEEEEeehhhH-HHHHHHHHhhee
Confidence 456667888888776543 333344455555
No 54
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=43.34 E-value=39 Score=28.34 Aligned_cols=36 Identities=17% Similarity=0.362 Sum_probs=25.0
Q ss_pred eeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCCCCC
Q 011139 77 GLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCP 114 (492)
Q Consensus 77 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~C~ 114 (492)
..+|++++|+. ++++.++|||...+-+..+-+..|.
T Consensus 23 ~mLyI~~~ing--~~vkA~VDtGAQ~tims~~~a~r~g 58 (124)
T PF09668_consen 23 SMLYINCKING--VPVKAFVDTGAQSTIMSKSCAERCG 58 (124)
T ss_dssp ---EEEEEETT--EEEEEEEETT-SS-EEEHHHHHHTT
T ss_pred ceEEEEEEECC--EEEEEEEeCCCCccccCHHHHHHcC
Confidence 47889999999 9999999999998888654333454
No 55
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=41.81 E-value=27 Score=27.60 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=18.6
Q ss_pred cEEEecccccccccHHHHHHHH
Q 011139 311 ETIVDSGTTLTYLVEEAFDPFV 332 (492)
Q Consensus 311 ~~iiDSGtt~~~lp~~~~~~i~ 332 (492)
.+.+|||.+...+|...++.+.
T Consensus 12 ~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 12 KFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEecCCEEEeccHHHHhhhc
Confidence 4899999999999998766654
No 56
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=41.04 E-value=31 Score=28.94 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=22.1
Q ss_pred EEEEccEEeecCcccccccCCCcEEEecccccccccHHHHHH
Q 011139 289 GITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDP 330 (492)
Q Consensus 289 ~i~v~g~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~ 330 (492)
.+++||+.+ .|++|||...+.++.+.++.
T Consensus 28 ~~~ing~~v-------------kA~VDtGAQ~tims~~~a~r 56 (124)
T PF09668_consen 28 NCKINGVPV-------------KAFVDTGAQSTIMSKSCAER 56 (124)
T ss_dssp EEEETTEEE-------------EEEEETT-SS-EEEHHHHHH
T ss_pred EEEECCEEE-------------EEEEeCCCCccccCHHHHHH
Confidence 367788876 48999999999999987665
No 57
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=40.25 E-value=18 Score=37.08 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=25.8
Q ss_pred ccCCCchhhhhcccchhhHHHHHHHHHhhhhcccC
Q 011139 458 LNMSSSSIEMLFKVLPLSILALFLHSLSFMEFQFL 492 (492)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (492)
...++.++++|++|+..++++ +-.++.||.|+||
T Consensus 359 ~n~s~LstgaIaGIsvavvvv-VgglvGfLcWwf~ 392 (397)
T PF03302_consen 359 TNKSGLSTGAIAGISVAVVVV-VGGLVGFLCWWFI 392 (397)
T ss_pred cccccccccceeeeeehhHHH-HHHHHHHHhhhee
Confidence 445678999999999886653 4456688999886
No 58
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=38.79 E-value=20 Score=29.87 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=17.9
Q ss_pred EEEecccc-cccccHHHHHHHH
Q 011139 312 TIVDSGTT-LTYLVEEAFDPFV 332 (492)
Q Consensus 312 ~iiDSGtt-~~~lp~~~~~~i~ 332 (492)
.++|||-+ ++.+|+++++++-
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~~ 50 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKLG 50 (125)
T ss_pred eEEecCCceeEEeCHHHHHhcC
Confidence 48999999 9999999877653
No 59
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=27.42 E-value=51 Score=26.23 Aligned_cols=12 Identities=25% Similarity=0.318 Sum_probs=6.0
Q ss_pred CCCchhHHHHHHH
Q 011139 1 MWNPRGLILAVLA 13 (492)
Q Consensus 1 m~~~~~l~~~~l~ 13 (492)
|. ++.++|+.|+
T Consensus 1 Ma-SK~~llL~l~ 12 (95)
T PF07172_consen 1 MA-SKAFLLLGLL 12 (95)
T ss_pred Cc-hhHHHHHHHH
Confidence 55 5555554443
No 60
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=24.39 E-value=1e+02 Score=26.14 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=24.9
Q ss_pred eEEEEEEeCCCCcEEEEEEecCCCeeEEeCC
Q 011139 78 LYFTKVKLGSPPKEFNVQIDTGSDILWVTCS 108 (492)
Q Consensus 78 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~ 108 (492)
.-.+.+.|.+ ++..+++|+|++...|...
T Consensus 21 vi~g~~~I~~--~~~~vLiDSGAThsFIs~~ 49 (135)
T PF08284_consen 21 VITGTFLINS--IPASVLIDSGATHSFISSS 49 (135)
T ss_pred eEEEEEEecc--EEEEEEEecCCCcEEccHH
Confidence 5567888998 9999999999999988654
No 61
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=23.07 E-value=1.6e+02 Score=27.00 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=21.1
Q ss_pred CCceeeCceeeecEEEEEECCCCEEEEEe
Q 011139 406 GGVSILGDLVLKDKIFVYDLARQRVGWAN 434 (492)
Q Consensus 406 ~~~~iLG~~fl~~~y~vfD~~~~~igfa~ 434 (492)
+-..|||.+|+|.|+=-...+ .+|-|..
T Consensus 90 g~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 90 GIDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred CCCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 456899999999887666654 4677765
No 62
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=21.36 E-value=95 Score=22.14 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHhhhcce
Q 011139 6 GLILAVLALLVQVSVVYSV 24 (492)
Q Consensus 6 ~l~~~~l~~l~~~a~~~~~ 24 (492)
+|++..|++++++++++++
T Consensus 4 Kl~vialLC~aLva~vQ~A 22 (65)
T PF10731_consen 4 KLIVIALLCVALVAIVQSA 22 (65)
T ss_pred hhhHHHHHHHHHHHHHhcC
Confidence 6777777788888877663
Done!