Query 011139
Match_columns 492
No_of_seqs 277 out of 1777
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 21:37:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011139.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011139hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3psg_A Pepsinogen; hydrolase(a 100.0 4.1E-61 1.4E-65 485.2 23.8 302 72-436 51-370 (370)
2 2x0b_A Renin; hydrolase-hormon 100.0 3.2E-61 1.1E-65 486.8 21.6 302 74-436 58-383 (383)
3 1tzs_A Cathepsin E; hydrolase, 100.0 3.1E-59 1.1E-63 469.3 28.7 311 74-444 20-350 (351)
4 3fv3_A SAPP1P-secreted asparti 100.0 9.3E-59 3.2E-63 464.1 29.8 310 63-445 3-338 (339)
5 3vla_A EDGP; extracellular, in 100.0 2.2E-58 7.6E-63 470.9 31.0 350 61-437 7-400 (413)
6 1mpp_A Pepsin; hydrolase(acid 100.0 5.1E-58 1.7E-62 462.5 29.3 318 62-441 7-360 (361)
7 2qzx_A Candidapepsin-5; aspart 100.0 3.9E-58 1.3E-62 460.0 28.2 312 76-446 11-341 (342)
8 1j71_A Candidapepsin, aspartic 100.0 4.1E-58 1.4E-62 458.1 27.7 305 76-445 11-333 (334)
9 3pvk_A Candidapepsin-2; hydrol 100.0 5.3E-58 1.8E-62 459.3 28.3 313 76-446 11-341 (342)
10 3cms_A Chymosin B; hydrolase, 100.0 2.4E-58 8.4E-63 457.7 24.1 299 74-436 11-323 (323)
11 1dpj_A Proteinase A; proteinas 100.0 6.1E-58 2.1E-62 456.1 27.0 298 74-436 10-329 (329)
12 4aa9_A Chymosin; hydrolase, as 100.0 3.5E-58 1.2E-62 456.3 24.9 300 73-436 7-320 (320)
13 2apr_A Rhizopuspepsin; hydrola 100.0 3.2E-57 1.1E-61 449.8 29.4 299 75-436 13-324 (325)
14 1am5_A Pepsin, acid proteinase 100.0 1.8E-57 6.2E-62 451.7 26.9 298 74-436 9-324 (324)
15 3k1w_A Renin; protease, altern 100.0 5.9E-58 2E-62 458.8 23.0 311 62-437 7-341 (341)
16 1htr_B Gastricsin; aspartyl pr 100.0 3E-57 1E-61 451.1 27.1 301 74-436 9-329 (329)
17 1miq_A Plasmepsin; aspartic pr 100.0 3.5E-57 1.2E-61 457.3 26.1 297 74-436 59-374 (375)
18 3c9x_A Trichoderma reesei aspa 100.0 4.6E-57 1.6E-61 449.5 25.4 303 75-435 13-329 (329)
19 3qvc_A Histo-aspartic protease 100.0 1.8E-57 6.1E-62 467.4 22.3 298 73-436 133-449 (451)
20 1oew_A Endothiapepsin; hydrola 100.0 7.1E-57 2.4E-61 448.1 23.6 302 75-435 13-329 (329)
21 1qdm_A Prophytepsin; aspartic 100.0 6.4E-57 2.2E-61 467.4 24.0 313 74-435 49-477 (478)
22 3aup_A SBG7S, BG, basic 7S glo 100.0 2.5E-56 8.6E-61 456.2 26.9 345 63-439 10-396 (403)
23 1yg9_A Aspartic protease BLA G 100.0 1.3E-56 4.5E-61 446.2 23.7 298 73-436 13-329 (330)
24 2bju_A Plasmepsin II; aspartic 100.0 2.6E-56 8.8E-61 458.1 20.0 298 74-436 135-450 (453)
25 3lpj_A Beta-secretase 1; alzhe 100.0 1.1E-54 3.8E-59 450.8 29.5 318 76-440 73-424 (455)
26 2ewy_A Beta-secretase 2; BACE2 100.0 1.4E-54 4.9E-59 440.9 29.4 325 76-448 12-369 (383)
27 1t6e_X Xylanase inhibitor; two 100.0 2.7E-54 9.3E-59 438.0 30.2 327 74-437 11-374 (381)
28 2qp8_A Beta-secretase 1; BACE1 100.0 4.6E-54 1.6E-58 438.7 30.5 325 76-448 20-381 (395)
29 1ibq_A Aspergillopepsin; aspar 100.0 2E-54 6.7E-59 429.8 26.4 299 76-436 13-325 (325)
30 3vf3_A Beta-secretase 1; struc 100.0 1.1E-53 3.7E-58 437.1 31.7 324 77-447 28-387 (402)
31 1wkr_A Polyporopepsin; hydrola 100.0 1.8E-54 6.1E-59 433.1 24.5 292 76-440 11-337 (340)
32 1izd_A Aspartic proteinase; su 100.0 2.8E-54 9.7E-59 428.1 23.9 296 76-436 14-323 (323)
33 1bxo_A Protein (penicillopepsi 100.0 2.9E-54 9.9E-59 428.2 21.4 296 76-436 14-323 (323)
34 1b5f_A Protein (cardosin A); h 100.0 6E-42 2E-46 324.7 17.1 217 74-337 10-238 (239)
35 1lya_B Cathepsin D; lysosomal 100.0 6.7E-39 2.3E-43 304.7 19.8 219 198-436 5-241 (241)
36 1lya_A Cathepsin D; lysosomal 99.9 2.7E-22 9.3E-27 160.9 8.3 83 74-187 10-96 (97)
37 1b5f_B Protein (cardosin A); h 99.8 1.1E-18 3.7E-23 137.6 6.9 82 353-436 2-87 (87)
38 3s8i_A Protein DDI1 homolog 1; 90.8 0.24 8.3E-06 41.9 4.6 37 399-435 99-135 (148)
39 2i1a_A DNA damage-inducible pr 90.2 0.52 1.8E-05 39.7 6.2 27 407-433 108-134 (148)
40 2hs1_A HIV-1 protease; ultra-h 83.6 1.5 5E-05 34.1 4.8 27 80-108 10-36 (99)
41 1fmb_A EIAV protease; hydrolas 82.1 1.3 4.5E-05 34.8 4.0 26 80-107 10-35 (104)
42 2i1a_A DNA damage-inducible pr 79.1 1.6 5.6E-05 36.5 3.9 30 76-107 24-53 (148)
43 3ec0_A Protease; HIV-2, inhibi 78.7 2.7 9.1E-05 32.6 4.6 27 80-108 10-36 (99)
44 3liy_A Protease; hydrolase, hy 73.3 2.9 9.9E-05 33.1 3.5 29 81-109 13-44 (116)
45 3s8i_A Protein DDI1 homolog 1; 71.9 3.2 0.00011 34.9 3.8 30 77-108 23-52 (148)
46 2hah_A Protease, retropepsin; 70.4 3.9 0.00013 32.7 3.8 25 80-107 16-40 (116)
47 3sqf_A Protease; folded monome 61.9 7.9 0.00027 30.8 3.9 28 80-109 11-38 (114)
48 3slz_A GAG-Pro-POL polyprotein 53.4 16 0.00054 29.9 4.5 29 78-108 22-50 (132)
49 2rsp_A RSV protease; hydrolase 45.9 21 0.00072 28.8 4.1 23 85-109 27-49 (124)
50 3ka2_A [L-Ala51;Gly51']HIV-1 p 43.2 20 0.00068 31.6 3.8 27 79-107 9-35 (203)
51 2k1k_A Ephrin type-A receptor 29.7 36 0.0012 21.1 2.3 19 461-479 6-24 (38)
52 3ka2_A [L-Ala51;Gly51']HIV-1 p 24.5 84 0.0029 27.6 4.7 27 79-107 113-139 (203)
53 1b5f_A Protein (cardosin A); h 21.5 70 0.0024 28.6 3.8 31 77-107 188-226 (239)
No 1
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=100.00 E-value=4.1e-61 Score=485.18 Aligned_cols=302 Identities=29% Similarity=0.506 Sum_probs=257.9
Q ss_pred CCccceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCCC--CCCCCCCCcCCCCccCCCCCcCceecCCCccccCccC
Q 011139 72 DPFLIGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSN--CPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQ 149 (492)
Q Consensus 72 ~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~--C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~ 149 (492)
.++.+..|+++|+||||||+|.|++||||+++||+|..|.. |..+ +.|||++|+|++..
T Consensus 51 ~n~~d~~Y~~~i~iGTPpQ~~~v~~DTGSs~lWV~s~~C~~~~C~~~-------~~y~~~~SsT~~~~------------ 111 (370)
T 3psg_A 51 ENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDH-------NQFNPDDSSTFEAT------------ 111 (370)
T ss_dssp GGGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTS-------CCBCGGGCTTCEEE------------
T ss_pred eeccCCEEEEEEEEcCCCCEEEEEEeCCCCccEEECCCCCCcccCCC-------CCCCCccCcCcEEC------------
Confidence 34667899999999999999999999999999999999975 6655 89999999999743
Q ss_pred CCCCCCCCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCC
Q 011139 150 TTATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQG 229 (492)
Q Consensus 150 ~~~~~c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~ 229 (492)
++.|.++|++|+ +.|.+++|+|+|++.. +.++.|||+....+.+ +....+|||||||++
T Consensus 112 -----------~~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~~--------v~~~~Fg~a~~~~~~~-~~~~~~dGIlGLg~~ 170 (370)
T 3psg_A 112 -----------SQELSITYGTGS-MTGILGYDTVQVGGIS--------DTNQIFGLSETEPGSF-LYYAPFDGILGLAYP 170 (370)
T ss_dssp -----------EEEEEEESSSCE-EEEEEEEEEEEETTEE--------EEEEEEEEECSCCCGG-GGGCSCSEEEECSCG
T ss_pred -----------CcEEEEEeCCce-EEEEEEEEEEeeCCcc--------cCCeEEEEEEeecccc-cccCCccceeccCCc
Confidence 479999999999 8999999999999765 7789999999886642 224568999999997
Q ss_pred CC------hHHHHhhhcCCCC-ceeEEeecCCCCCcceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEccEEee
Q 011139 230 DL------SVISQLASRGITP-RVFSHCLKGQGNGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQLLS 298 (492)
Q Consensus 230 ~~------s~~~~l~~~g~i~-~~FS~~l~~~~~~~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~g~~~~ 298 (492)
.. +++++|++||+|+ ++||+||++....+|+|+|||+|+ +++.|+|+. .+.+|.|.+++|+|+++.+.
T Consensus 171 ~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~D~~~y~g~l~~~pv~-~~~~w~v~l~~i~v~g~~~~ 249 (370)
T 3psg_A 171 SISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVS-VEGYWQITLDSITMDGETIA 249 (370)
T ss_dssp GGCGGGCCCHHHHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGGGBSSCCEEEECS-EETTEEEEECEEESSSSEEE
T ss_pred cccccCCCCHHHHHHHCCCCCCCEEEEEEccCCCCCeEEEEEeeChHhcCCcceeeccc-ccceeEEEEeEEEECCEEEe
Confidence 65 4889999999996 899999998756689999999994 799999998 56899999999999987764
Q ss_pred cCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEEEecCCcEEE
Q 011139 299 IDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMV 378 (492)
Q Consensus 299 ~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg~~~~ 378 (492)
. ..+..+|+||||+++++|++++++|.+++++.. ...++|.++|+....+|+|+|+| +|++++
T Consensus 250 ~-------~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~---------~~~g~~~v~C~~~~~lP~i~f~~-~g~~~~ 312 (370)
T 3psg_A 250 C-------SGGCQAIVDTGTSLLTGPTSAIANIQSDIGASE---------NSDGEMVISCSSIDSLPDIVFTI-DGVQYP 312 (370)
T ss_dssp C-------TTCEEEEECTTCCSEEEEHHHHHHHHHHTTCEE---------CTTCCEECCGGGGGGCCCEEEEE-TTEEEE
T ss_pred c-------CCCceEEEcCCCCcEECCHHHHHHHHHHhCCcc---------cCCCcEEEECCCcccCCcEEEEE-CCEEEE
Confidence 2 245689999999999999999999999987652 23457999999888999999999 889999
Q ss_pred ecCCceEEEeeeeCCceEEEEEEEecC-----CCceeeCceeeecEEEEEECCCCEEEEEeCC
Q 011139 379 LKPEEYLIHLGFYDGAAMWCIGFEKSP-----GGVSILGDLVLKDKIFVYDLARQRVGWANYD 436 (492)
Q Consensus 379 l~p~~yi~~~~~~~~~~~c~l~i~~~~-----~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~ 436 (492)
||+++|+++ .++.|.++|+..+ +..||||++|||++|+|||++++|||||+++
T Consensus 313 l~~~~yi~~-----~~~~C~~~~~~~~~~~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfA~a~ 370 (370)
T 3psg_A 313 LSPSAYILQ-----DDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA 370 (370)
T ss_dssp ECHHHHEEE-----CSSCEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred ECHHHhccc-----CCCEEEEEEEeCCCCCCCCCcEEeChHHhcceEEEEECCCCEEEEEEcC
Confidence 999999997 1345888898753 2369999999999999999999999999974
No 2
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=100.00 E-value=3.2e-61 Score=486.80 Aligned_cols=302 Identities=23% Similarity=0.435 Sum_probs=257.9
Q ss_pred ccceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCC----CCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccC
Q 011139 74 FLIGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCS----NCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQ 149 (492)
Q Consensus 74 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~----~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~ 149 (492)
+.+..|+++|+||||||+|.|+|||||+++||+|..|. .|..+ +.|||++|+||+.
T Consensus 58 ~~~~~Y~~~I~IGTP~Q~f~vi~DTGSs~lWV~s~~C~~~~~~C~~~-------~~y~~~~SsT~~~------------- 117 (383)
T 2x0b_A 58 YMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYH-------KLFDASDSSSYKH------------- 117 (383)
T ss_dssp ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTSHHHHTS-------CCBCGGGCTTCEE-------------
T ss_pred cCCCEEEEEEEECCCCcEEEEEEeCCCCCeEEeccCCCCCcccccCC-------CCCCCCCCCcEEE-------------
Confidence 55689999999999999999999999999999999996 48765 8999999999974
Q ss_pred CCCCCCCCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCC
Q 011139 150 TTATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQG 229 (492)
Q Consensus 150 ~~~~~c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~ 229 (492)
.+|.|.++|++|+ +.|++++|+|+|++.. +. +.|||+..+.+.. +....+|||||||++
T Consensus 118 ----------~~~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~~--------v~-~~Fg~a~~~~g~~-f~~~~~dGIlGLg~~ 176 (383)
T 2x0b_A 118 ----------NGTELTLRYSTGT-VSGFLSQDIITVGGIT--------VT-QMFGEVTEMPALP-FMLAEFDGVVGMGFI 176 (383)
T ss_dssp ----------EEEEEEEECSSCE-EEEEEEEEEEEETTEE--------EE-EEEEEEEECCHHH-HTTCSSSEEEECSCG
T ss_pred ----------CCcEEEEEcCCcc-EEEEEEeeEEEEcCce--------EE-EEEEEEEecCCcc-cccCCCceEeccCCC
Confidence 3579999999998 8999999999998754 66 9999999876531 123577999999998
Q ss_pred CCh------HHHHhhhcCCCC-ceeEEeecCCCCC----cceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEcc
Q 011139 230 DLS------VISQLASRGITP-RVFSHCLKGQGNG----GGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNG 294 (492)
Q Consensus 230 ~~s------~~~~l~~~g~i~-~~FS~~l~~~~~~----~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~g 294 (492)
..+ ++++|++||+|+ ++||+||++.... +|+|+|||+|+ +++.|+|+. ...+|+|.+++|.|++
T Consensus 177 ~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~~~G~l~fGg~d~~~y~G~l~~~pv~-~~~~w~v~l~~i~v~~ 255 (383)
T 2x0b_A 177 EQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLI-KTGVWQIQMKGVSVGS 255 (383)
T ss_dssp GGCGGGCCCHHHHHHTTTCCSSSEEEEEECCSCC----CCEEEEESSCCGGGEEEEEEEEEBS-STTSCEEEECEEEESS
T ss_pred ccccCCCCcHHHHHHhCCCCCCCEEEEEEcCCCCcccCCCcEEEECCcChHHcCCceEEEEcC-CCceEEEEEeEEEeCC
Confidence 654 789999999996 8999999986433 89999999995 689999998 5789999999999998
Q ss_pred EEeecCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEEEecCC
Q 011139 295 QLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGG 374 (492)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg 374 (492)
+.+. ...+..+|+||||+++++|++++++|.+++++.. ..+.|.++|...+.+|+|+|+| +|
T Consensus 256 ~~~~-------~~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~----------~~g~~~v~C~~~~~~P~i~f~~-~g 317 (383)
T 2x0b_A 256 STLL-------CEDGCLALVDTGASYISGSTSSIEKLMEALGAKK----------RLFDYVVKCNEGPTLPDISFHL-GG 317 (383)
T ss_dssp CCCB-------STTCEEEEECTTCSSEEECHHHHHHHHHHHTCEE----------CSSCEEEEGGGTTTCCCEEEEE-TT
T ss_pred ceEE-------cCCCcEEEEcCCCceEEcCHHHHHHHHHHhCCcc----------cCCcEEEeccccccCceEEEEE-CC
Confidence 7642 2345789999999999999999999999987642 2345889999888899999999 78
Q ss_pred cEEEecCCceEEEeeeeCCceEEEEEEEecC-----CCceeeCceeeecEEEEEECCCCEEEEEeCC
Q 011139 375 ASMVLKPEEYLIHLGFYDGAAMWCIGFEKSP-----GGVSILGDLVLKDKIFVYDLARQRVGWANYD 436 (492)
Q Consensus 375 ~~~~l~p~~yi~~~~~~~~~~~c~l~i~~~~-----~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~ 436 (492)
++++|+|++|+++... .+...|.++|+..+ .+.||||++|||++|+|||++++|||||+++
T Consensus 318 ~~~~l~~~~yi~~~~~-~~~~~C~~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~rIGfA~a~ 383 (383)
T 2x0b_A 318 KEYTLTSADYVFQESY-SSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR 383 (383)
T ss_dssp EEEEECHHHHBCCCCC-CTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEEEECHHHhEeeccC-CCCCeEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEeEEEcC
Confidence 9999999999987532 23456777898753 4589999999999999999999999999874
No 3
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=100.00 E-value=3.1e-59 Score=469.29 Aligned_cols=311 Identities=29% Similarity=0.465 Sum_probs=257.3
Q ss_pred ccceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCC--CCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCCC
Q 011139 74 FLIGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCS--NCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTT 151 (492)
Q Consensus 74 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~--~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~ 151 (492)
+.++.|+++|+||||+|+|.|++||||+++||+|..|. .|..+ +.|||++|+|++
T Consensus 20 ~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~-------~~y~~~~SsT~~---------------- 76 (351)
T 1tzs_A 20 YLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTH-------SRFQPSQSSTYS---------------- 76 (351)
T ss_dssp GSSSCCCEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTS-------CCBCGGGCTTCB----------------
T ss_pred cCCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCccccCCC-------CcCCcccCcceE----------------
Confidence 45689999999999999999999999999999999997 58765 899999999996
Q ss_pred CCCCCCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCC
Q 011139 152 ATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDL 231 (492)
Q Consensus 152 ~~~c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~ 231 (492)
..+|.|.+.|++|+ +.|.+++|+|+|++.. +.++.|||+....+.. +.....+||||||++..
T Consensus 77 -------~~~~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~--------~~~~~fg~~~~~~~~~-~~~~~~~GilGLg~~~~ 139 (351)
T 1tzs_A 77 -------QPGQSFSIQYGTGS-LSGIIGADQVSVEGLT--------VVGQQFGESVTEPGQT-FVDAEFDGILGLGYPSL 139 (351)
T ss_dssp -------CCSCEEEEESSSCE-EEEEEEEEEEEETTEE--------EEEEEEEEECSCCCGG-GGGCSCSEEEECSCGGG
T ss_pred -------ECCCEEEEEeCCCC-eEEEEEEeEEEECCeE--------ECCeEEEEEEeccccc-cccCCCceEEecCCccc
Confidence 35689999999998 7999999999998754 6789999998876542 12346799999999865
Q ss_pred h------HHHHhhhcCCCC-ceeEEeecCCCCC--cceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEccEEee
Q 011139 232 S------VISQLASRGITP-RVFSHCLKGQGNG--GGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQLLS 298 (492)
Q Consensus 232 s------~~~~l~~~g~i~-~~FS~~l~~~~~~--~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~g~~~~ 298 (492)
+ ++++|++||+|+ ++||+||++.... +|+|+|||+|+ +++.|+|+. ...+|.|.+++|+|+++.+.
T Consensus 140 s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~~~v~l~~i~v~~~~~~ 218 (351)
T 1tzs_A 140 AVGGVTPVFDNMMAQNLVDLPMFSVYMSSNPEGGAGSELIFGGYDHSHFSGSLNWVPVT-KQAYWQIALDNIQVGGTVMF 218 (351)
T ss_dssp SGGGCCCHHHHHHHTTCCSSSEEEEECCCCC--CTTCEEEETSCCGGGBCSCCEEEECS-EETTEEEEEEEEEETTEEEE
T ss_pred cccCCCcHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEECCCCHHHcCCceEEEecC-CCceEEEEeCEEEECCceEE
Confidence 4 889999999996 8999999986443 79999999994 789999998 56899999999999998753
Q ss_pred cCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEEEecCCcEEE
Q 011139 299 IDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMV 378 (492)
Q Consensus 299 ~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg~~~~ 378 (492)
......+||||||+++++|++++++|.+++++.. .. +.|.++|.....+|+|+|+| +|++++
T Consensus 219 -------~~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~--------~~--g~~~~~C~~~~~~P~i~f~f-~g~~~~ 280 (351)
T 1tzs_A 219 -------CSEGCQAIVDTGTSLITGPSDKIKQLQNAIGAAP--------VD--GEYAVECANLNVMPDVTFTI-NGVPYT 280 (351)
T ss_dssp -------CTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEE--------CS--SSEEECGGGGGGSCCEEEEE-TTEEEE
T ss_pred -------cCCCceEEeccCCcceeCCHHHHHHHHHHhCCcc--------cC--CeEEEeCCCCccCCcEEEEE-CCEEEE
Confidence 1245679999999999999999999999986542 11 45889999878899999999 789999
Q ss_pred ecCCceEEEeeeeCCceEEEEEEEecC-----CCceeeCceeeecEEEEEECCCCEEEEEeCCCCCCccee
Q 011139 379 LKPEEYLIHLGFYDGAAMWCIGFEKSP-----GGVSILGDLVLKDKIFVYDLARQRVGWANYDCSLSVNVS 444 (492)
Q Consensus 379 l~p~~yi~~~~~~~~~~~c~l~i~~~~-----~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~c~~~~~~~ 444 (492)
|++++|+++... .+...|.++|+..+ .+.||||++|||++|+|||++++|||||+++|.+++++|
T Consensus 281 i~~~~yi~~~~~-~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rigfA~~~~~s~~~~~ 350 (351)
T 1tzs_A 281 LSPTAYTLLDFV-DGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFYSVFDRGNNRVGLAPAVPWSHPQFE 350 (351)
T ss_dssp ECTTTSEECC------CCEEESEEECCCCTTTCSCEEECHHHHHHEEEEEETTTTEEEEEEBC--------
T ss_pred ECHHHhEeeccC-CCCCeEEEEEEECCCCCCCCCeEEEChHHhhheEEEEECCCCEEEEEECCcccchhhc
Confidence 999999987432 22456888998753 468999999999999999999999999999998777765
No 4
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=100.00 E-value=9.3e-59 Score=464.14 Aligned_cols=310 Identities=24% Similarity=0.399 Sum_probs=265.2
Q ss_pred eeeccCCCCCCccceeEEEEEEeCCCCcEEEEEEecCCCeeEEe-----CCCCCCCCCCCCCCcCCCCccCCCCCcCcee
Q 011139 63 VEFPVQGSSDPFLIGLYFTKVKLGSPPKEFNVQIDTGSDILWVT-----CSSCSNCPQNSGLGIQLNFFDTSSSSTARIV 137 (492)
Q Consensus 63 ~~~~~~~~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~-----~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v 137 (492)
+++|+... ++.|+++|+||||+|++.|++||||+++||+ |..|..|..+ +.|+|++|+|++..
T Consensus 3 i~~~l~~~-----~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~~~C~~~~~C~~~-------~~y~~~~SsT~~~~ 70 (339)
T 3fv3_A 3 ISLSLINE-----GPSYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKSS-------GTFTPSSSSSYKNL 70 (339)
T ss_dssp EEEEEEEC-----SSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECTTCCTTTT-------CCBCGGGCTTCEEE
T ss_pred eeeEEEcC-----CCEEEEEEEEcCCCcEEEEEEeCCCCceEEecCCCCCCCCCCCCCC-------CcCCCccCcceeeC
Confidence 45555433 3689999999999999999999999999998 5555567765 89999999999754
Q ss_pred cCCCccccCccCCCCCCCCCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCC
Q 011139 138 SCSDPLCASEIQTTATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTD 217 (492)
Q Consensus 138 ~C~~~~C~~~~~~~~~~c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~ 217 (492)
+|.|.+.|++|+.+.|.+++|+|+|++.. +.++.|||+....+
T Consensus 71 -----------------------~~~~~i~Yg~gs~~~G~~~~D~v~~g~~~--------v~~~~fg~~~~~~~------ 113 (339)
T 3fv3_A 71 -----------------------GAAFTIRYGDGSTSQGTWGKDTVTINGVS--------ITGQQIADVTQTSV------ 113 (339)
T ss_dssp -----------------------EEEEEEECTTSCEEEEEEEEEEEEETTEE--------EEEEEEEEEEEESS------
T ss_pred -----------------------CceEEEEECCCceEEEEEEEEEEEECCEE--------ECceEEEEEEecCC------
Confidence 47999999999889999999999999755 67899999998753
Q ss_pred CCcceeeecCCCCCh----------------HHHHhhhcCCCC-ceeEEeecCCCCCcceEEECCCCC----CCeEEeeC
Q 011139 218 KAIDGIFGFGQGDLS----------------VISQLASRGITP-RVFSHCLKGQGNGGGILVLGEILE----PSIVYSPL 276 (492)
Q Consensus 218 ~~~~GIlGLg~~~~s----------------~~~~l~~~g~i~-~~FS~~l~~~~~~~G~l~fGg~d~----~~l~~~p~ 276 (492)
.+||||||++..+ ++++|++||+|+ ++||+||++.+...|+|+|||+|+ +++.|+|+
T Consensus 114 --~~GilGLg~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~i~~~~fsl~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~ 191 (339)
T 3fv3_A 114 --DQGILGIGYTSNEAVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNSPSAETGTIIFGGVDNAKYSGKLVAEQV 191 (339)
T ss_dssp --SSCEEECSCGGGCCCBCTTSCBCSCCCCCHHHHHHHTTSCSSSEEEEECCCTTCSEEEEEETEEETTSBSSCCEEEEB
T ss_pred --CceeEEecCccccccccccccccCccCCcHHHHHHHCCCCCCceEEEEECCCCCCCeEEEEeeechHHeecceEEEec
Confidence 4899999997542 899999999996 799999998766789999999994 68999999
Q ss_pred CCCCCcceEEEeEEEEccEEeecCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEe
Q 011139 277 VPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLV 356 (492)
Q Consensus 277 ~~~~~~~~v~l~~i~v~g~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v 356 (492)
. ...+|.|++++|.|+++.+.. ...++|||||++++||++++++|.+++.+..... ....+.|.+
T Consensus 192 ~-~~~~~~v~l~~i~v~g~~~~~---------~~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~~-----~~~~~~~~~ 256 (339)
T 3fv3_A 192 T-SSQALTISLASVNLKGSSFSF---------GDGALLDSGTTLTYFPSDFAAQLADKAGARLVQV-----ARDQYLYFI 256 (339)
T ss_dssp C-CSSSCEEEEEEEEESSCEEEE---------EEEEEECTTBSSEEECHHHHHHHHHHHTCEEEEE-----ETTEEEEEE
T ss_pred c-cCccEEEEEEEEEECCEeecC---------CccEEEeCCCCCEecCHHHHHHHHHHcCCEEccc-----cccCceEEE
Confidence 8 456999999999999987743 2569999999999999999999999998764211 013466899
Q ss_pred cCCCcccCCeEEEEecCCcEEEecCCceEEEeeeeCCceEEEEEEEecCCCceeeCceeeecEEEEEECCCCEEEEEeCC
Q 011139 357 SNSVSEIFPQVSLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFEKSPGGVSILGDLVLKDKIFVYDLARQRVGWANYD 436 (492)
Q Consensus 357 ~c~~~~~~p~i~f~f~gg~~~~l~p~~yi~~~~~~~~~~~c~l~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~ 436 (492)
+|.. ..+|+|+|+|.+|++++||+++|+++. ++..|+++|++ .+.||||++|||++|+|||++++|||||+++
T Consensus 257 ~C~~-~~~p~i~f~f~~g~~~~v~~~~~~~~~----~~~~C~~~i~~--~~~~ilG~~fl~~~y~vfD~~~~~igfA~~~ 329 (339)
T 3fv3_A 257 DCNT-DTSGTTVFNFGNGAKITVPNTEYVYQN----GDGTCLWGIQP--SDDTILGDNFLRHAYLLYNLDANTISIAQVK 329 (339)
T ss_dssp CTTC-CCCSEEEEEETTSCEEEEEGGGGEEEC----SSSCEEESEEE--CSSCEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred ecCC-CCCCcEEEEECCCCEEEECHHHheeeC----CCCeEEEEEEe--CCcEEeChHHHhCEEEEEECCCCEEEEEecC
Confidence 9986 568999999966899999999999874 34679999998 4679999999999999999999999999999
Q ss_pred CCCCcceee
Q 011139 437 CSLSVNVSI 445 (492)
Q Consensus 437 c~~~~~~~~ 445 (492)
|+++.+++.
T Consensus 330 ~~~~s~i~~ 338 (339)
T 3fv3_A 330 YTTDSSISA 338 (339)
T ss_dssp CCSCCCEEE
T ss_pred CCCccceEE
Confidence 998888764
No 5
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=100.00 E-value=2.2e-58 Score=470.94 Aligned_cols=350 Identities=20% Similarity=0.355 Sum_probs=278.9
Q ss_pred CeeeeccCCCCCCccceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCCCCCCCCCCCcCCCCccCCCCCcCceecCC
Q 011139 61 GVVEFPVQGSSDPFLIGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCS 140 (492)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~ 140 (492)
..+.+|+.+.. .+++|+++|+||||||+|.|++||||+++||+|..| .+|+||+.+.|+
T Consensus 7 ~~~~~pv~~d~---~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~~c------------------~~Sst~~~v~C~ 65 (413)
T 3vla_A 7 SALVVPVKKDA---STLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQN------------------YVSSTYRPVRCR 65 (413)
T ss_dssp SEEEEEEEECT---TTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSS------------------CCCTTCEECBTT
T ss_pred ccEEEEeeecC---CCCeEEEEEEcCCCCcceEEEEeCCChhhhcccCCC------------------CCCCCcCccCCC
Confidence 34567777653 468999999999999999999999999999998764 258999999999
Q ss_pred CccccCccCCCCCCCCC------CCCCCeeeeee-CCCCeeEEEEEEEEEEeccccCCccc-ccccccEEEeeeeeccCC
Q 011139 141 DPLCASEIQTTATQCPS------GSNQCSYSFEY-GDGSGTSGSYIYDTLYFDAILGESLI-ANSTALIVFGCSTYQTGD 212 (492)
Q Consensus 141 ~~~C~~~~~~~~~~c~~------~~~~~~~~i~Y-~~g~~~~G~~~~D~v~i~~~~~~~~~-~~~~~~~~fg~~~~~~~~ 212 (492)
++.|.....+....|.. .++.|.|.+.| ++|+.+.|++++|+|+|+...+.... ...++++.|||+..+...
T Consensus 66 s~~C~~~~~~~~~~c~s~~~~~c~~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~ 145 (413)
T 3vla_A 66 TSQCSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQ 145 (413)
T ss_dssp SHHHHHTTCCEEECCSSCCBTTBCSSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGT
T ss_pred cccccccccCCCcccccCCCCCCCCCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECccccccc
Confidence 99998654432222221 24679999999 58888899999999999854332110 113678999999986322
Q ss_pred CCCCCCCcceeeecCCCCChHHHHhhhcCCCCceeEEeecCCCCCcceEEECCCCC---------CC-eEEeeCCCCC--
Q 011139 213 LSKTDKAIDGIFGFGQGDLSVISQLASRGITPRVFSHCLKGQGNGGGILVLGEILE---------PS-IVYSPLVPSK-- 280 (492)
Q Consensus 213 ~~~~~~~~~GIlGLg~~~~s~~~~l~~~g~i~~~FS~~l~~~~~~~G~l~fGg~d~---------~~-l~~~p~~~~~-- 280 (492)
. ....+|||||||+++++++.||.++++++++||+||.+....+|+|+||++|. ++ +.|+|++...
T Consensus 146 g--~~~~~dGIlGLg~~~lSl~sql~~~~~i~~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~ 223 (413)
T 3vla_A 146 N--LASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVS 223 (413)
T ss_dssp T--SCTTCCEEEECSSSSSSHHHHHHHHHTCCSEEEEECCSCSSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSC
T ss_pred C--cccccccccccCCCCcchHHHHhhhcCCCceEEEeCCCCCCCceEEEECCCcccccccccccCCceeEeecccCCcc
Confidence 1 12568999999999999999999999888899999998656789999999873 35 9999998642
Q ss_pred -----------CcceEEEeEEEEccEEeecCccccccc--CCCcEEEecccccccccHHHHHHHHHHHHHHhcc--CCC-
Q 011139 281 -----------PHYNLNLHGITVNGQLLSIDPSAFAAS--NNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQ--SVT- 344 (492)
Q Consensus 281 -----------~~~~v~l~~i~v~g~~~~~~~~~~~~~--~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~--~~~- 344 (492)
.+|+|+|++|+|+++.+.++...+... ...++||||||++++||+++|++|.++|.+++.. ..+
T Consensus 224 ~~~~~~~~~~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~ 303 (413)
T 3vla_A 224 TSATSTQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRV 303 (413)
T ss_dssp CSSSCCTTCCCCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred ccccccccCCCceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcC
Confidence 699999999999999998877666532 2468999999999999999999999999988741 111
Q ss_pred CCCCCCCceEEecCCCc----ccCCeEEEEecC-CcEEEecCCceEEEeeeeCCceEEEEEEEecC---CCceeeCceee
Q 011139 345 PTMSKGKQCYLVSNSVS----EIFPQVSLNFEG-GASMVLKPEEYLIHLGFYDGAAMWCIGFEKSP---GGVSILGDLVL 416 (492)
Q Consensus 345 ~~~~~~~~~y~v~c~~~----~~~p~i~f~f~g-g~~~~l~p~~yi~~~~~~~~~~~c~l~i~~~~---~~~~iLG~~fl 416 (492)
........||.+++... ..+|+|+|+|.| +++|+|++++|+++.. ++.+|++|...+ ...||||+.||
T Consensus 304 ~~~~~~~~C~~~~~~~~~~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~----~~~~Cl~~~~~~~~~~~~~IlGd~fl 379 (413)
T 3vla_A 304 ASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYIN----DNVVCLGVVDGGSNLRTSIVIGGHQL 379 (413)
T ss_dssp CCCTTCSCEEECTTCCEETTEECCCCEEEECSSTTCEEEECHHHHEEEEE----TTEEEECEEEEESSCSSSEEECHHHH
T ss_pred CCCCCCcceeccCCccccccccCCCcEEEEEcCCcEEEEeCccceEEEeC----CCcEEEEEEecCCCcccceeEehhhh
Confidence 11123468999887532 479999999965 4899999999999743 245678998764 25899999999
Q ss_pred ecEEEEEECCCCEEEEEeCCC
Q 011139 417 KDKIFVYDLARQRVGWANYDC 437 (492)
Q Consensus 417 ~~~y~vfD~~~~~igfa~~~c 437 (492)
|++|+|||++++|||||++.+
T Consensus 380 ~~~~vvfD~~~~riGfa~~~~ 400 (413)
T 3vla_A 380 EDNLVQFDLATSRVGFSGTLL 400 (413)
T ss_dssp TTEEEEEETTTTEEEEEEEGG
T ss_pred cCeEEEEECCCCEEEEEEecc
Confidence 999999999999999998744
No 6
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=100.00 E-value=5.1e-58 Score=462.50 Aligned_cols=318 Identities=24% Similarity=0.393 Sum_probs=267.8
Q ss_pred eeeeccCCCCCCccceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCC---CCCCCCCCCcCCCCccCCCCCcCceec
Q 011139 62 VVEFPVQGSSDPFLIGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCS---NCPQNSGLGIQLNFFDTSSSSTARIVS 138 (492)
Q Consensus 62 ~~~~~~~~~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~---~C~~~~~~~~~~~~y~~~~SsT~~~v~ 138 (492)
+...|+.+ +.++.|+++|+||||+|++.|+|||||+++||+|..|. .|..+ +.|+|++|+|++..
T Consensus 7 ~~~~~l~~----~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~C~~~-------~~y~~~~SsT~~~~- 74 (361)
T 1mpp_A 7 VDTPGLYD----FDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGK-------RFFDPSSSSTFKET- 74 (361)
T ss_dssp EEEEEEEE----TTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCGGGTCCSS-------CCBCGGGCTTCEEE-
T ss_pred cceEEeec----CCCCEEEEEEEECCCCcEEEEEEcCCCCCeEECCCCCCCCccCCCC-------CcCCCccCCceEec-
Confidence 34456643 34589999999999999999999999999999999998 68775 89999999999753
Q ss_pred CCCccccCccCCCCCCCCCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccC-----CC
Q 011139 139 CSDPLCASEIQTTATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTG-----DL 213 (492)
Q Consensus 139 C~~~~C~~~~~~~~~~c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~-----~~ 213 (492)
+|.|.+.|++|+ +.|.+++|+|+|++.. +.++.|||+....+ .+
T Consensus 75 ----------------------~~~~~i~Yg~Gs-~~G~~~~D~v~~g~~~--------v~~~~fg~~~~~~~~~~~~~~ 123 (361)
T 1mpp_A 75 ----------------------DYNLNITYGTGG-ANGIYFRDSITVGGAT--------VKQQTLAYVDNVSGPTAEQSP 123 (361)
T ss_dssp ----------------------EEEEEEECSSCE-EEEEEEEEEEEETTEE--------EEEEEEEEEEEEESGGGSSCT
T ss_pred ----------------------CCeEEEEECCce-EEEEEEEEEEEECCEE--------EeceEEEEEEeccCccccccc
Confidence 479999999999 8999999999998654 67899999998876 22
Q ss_pred CCCCCCcceeeecCCCCC------------hHHHHhhhcCCCC-ceeEEeecCCCCCcceEEECCCCC----CCeEEeeC
Q 011139 214 SKTDKAIDGIFGFGQGDL------------SVISQLASRGITP-RVFSHCLKGQGNGGGILVLGEILE----PSIVYSPL 276 (492)
Q Consensus 214 ~~~~~~~~GIlGLg~~~~------------s~~~~l~~~g~i~-~~FS~~l~~~~~~~G~l~fGg~d~----~~l~~~p~ 276 (492)
+.....+||||||++.. +++++|++||+|+ ++||+||++. ...|+|+|||+|+ +++.|+|+
T Consensus 124 -~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~~~~l~~~g~i~~~~FS~~l~~~-~~~G~l~fGg~d~~~~~g~l~~~p~ 201 (361)
T 1mpp_A 124 -DSELFLDGIFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFSVYMNTN-DGGGQVVFGGVNNTLLGGDIQYTDV 201 (361)
T ss_dssp -TCSSCCCEEEECSCGGGSHHHHHHSCCCCCHHHHHHHTTSSSSSEEEEECCCS-SSEEEEEESSCCGGGBSSCCEEEEC
T ss_pred -cccCCCCCEEEeCCcccccccccccccCCCHHHHHHHcCCCCCcEEEEEecCC-CCCcEEEEecCChhhcCCceEEEEc
Confidence 22457899999999743 4778999999996 8999999985 5689999999994 78999999
Q ss_pred CCCCC---cceEEEeEEEEccEEeecCcccccccCCCcEE-EecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCc
Q 011139 277 VPSKP---HYNLNLHGITVNGQLLSIDPSAFAASNNRETI-VDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQ 352 (492)
Q Consensus 277 ~~~~~---~~~v~l~~i~v~g~~~~~~~~~~~~~~~~~~i-iDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~ 352 (492)
....+ +|.|.+++|+|+++.+.. .....+| |||||++++||++++++|.+++.+... ...+
T Consensus 202 ~~~~~~~~~~~v~l~~i~v~~~~~~~-------~~~~~ai~iDSGTt~~~lP~~~~~~l~~~~~~~~~--------~~~g 266 (361)
T 1mpp_A 202 LKSRGGYFFWDAPVTGVKIDGSDAVS-------FDGAQAFTIDTGTNFFIAPSSFAEKVVKAALPDAT--------ESQQ 266 (361)
T ss_dssp EEETTEEEEEEEEEEEEEETTEEEEE-------EEEEEEEEEETTCCSEEEEHHHHHHHHHHHCTTCE--------EETT
T ss_pred ccCCCceeEEEEEEeEEEECCeeecc-------CCCCEEEEECCCCCceeCCHHHHHHHHHHhCCccc--------CCCC
Confidence 85444 899999999999987642 1235799 999999999999999999999976531 2345
Q ss_pred eEEecCCCcccC-CeEEEEec-C-----CcEEEecCCceEEEeeeeCCceEEEEEEEecCCCceeeCceeeecEEEEEEC
Q 011139 353 CYLVSNSVSEIF-PQVSLNFE-G-----GASMVLKPEEYLIHLGFYDGAAMWCIGFEKSPGGVSILGDLVLKDKIFVYDL 425 (492)
Q Consensus 353 ~y~v~c~~~~~~-p~i~f~f~-g-----g~~~~l~p~~yi~~~~~~~~~~~c~l~i~~~~~~~~iLG~~fl~~~y~vfD~ 425 (492)
.|.++|.....+ |+|+|+|. + |++++|+|++|+++.. .+...|.++|++...+.||||++|||++|+|||+
T Consensus 267 ~~~~~C~~~~~~~p~i~f~f~~g~~~~~g~~~~i~~~~y~~~~~--~~~~~C~~~i~~~~~~~~iLG~~fl~~~yvvfD~ 344 (361)
T 1mpp_A 267 GYTVPCSKYQDSKTTFSLVLQKSGSSSDTIDVSVPISKMLLPVD--KSGETCMFIVLPDGGNQFIVGNLFLRFFVNVYDF 344 (361)
T ss_dssp EEEEEHHHHTTCCCEEEEEEECTTCSSCEEEEEEEGGGGEEECS--SSSCEEEESEEEESSSCCEEEHHHHTTEEEEEET
T ss_pred cEEEECCCcccCCCcEEEEEEcCCcCCCCeEEEECHHHhEEecC--CCCCeeEEEEEeCCCCCEEEChHHhccEEEEEEC
Confidence 689999876777 99999993 4 7999999999999753 2345788899886556899999999999999999
Q ss_pred CCCEEEEEeCCCCCCc
Q 011139 426 ARQRVGWANYDCSLSV 441 (492)
Q Consensus 426 ~~~~igfa~~~c~~~~ 441 (492)
+++|||||+++|+.+.
T Consensus 345 ~~~~igfa~~~~~~~~ 360 (361)
T 1mpp_A 345 GKNRIGFAPLASGYEN 360 (361)
T ss_dssp TTTEEEEEEBCTTTCC
T ss_pred CCCEEEEEEcccCCCC
Confidence 9999999999998654
No 7
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=100.00 E-value=3.9e-58 Score=459.95 Aligned_cols=312 Identities=23% Similarity=0.364 Sum_probs=260.9
Q ss_pred ceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCC--CCCCCCC--CCCCCcCCCCccCCCCCcCceecCCCccccCccCCC
Q 011139 76 IGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCS--SCSNCPQ--NSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTT 151 (492)
Q Consensus 76 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~--~C~~C~~--~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~ 151 (492)
++.|+++|+||||+|+|.|+|||||+++||++. .|..|.. ....|..++.|||++|+|++..
T Consensus 11 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~-------------- 76 (342)
T 2qzx_A 11 AITYTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSAGSYSPASSRTSQNL-------------- 76 (342)
T ss_dssp SSCEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSSSCCTTGGGTTCCBCGGGCTTCEEE--------------
T ss_pred CeEEEEEEEECCCCcEEEEEEeCCCCCeEEecCCCCccCccccCccccccCCCcCCcccCCCcccC--------------
Confidence 479999999999999999999999999999976 6764421 1122334589999999999754
Q ss_pred CCCCCCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCC
Q 011139 152 ATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDL 231 (492)
Q Consensus 152 ~~~c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~ 231 (492)
+|.|.++|++|+.+.|.+++|+|+|++.. +.++.|||+.... ..+||||||++..
T Consensus 77 ---------~~~~~i~Yg~Gs~~~G~~~~D~v~~g~~~--------v~~~~fg~~~~~~--------~~~GilGLg~~~~ 131 (342)
T 2qzx_A 77 ---------NTRFDIKYGDGSYAKGKLYKDTVGIGGVS--------VRDQLFANVWSTS--------ARKGILGIGFQSG 131 (342)
T ss_dssp ---------EEEEEEECTTSCEEEEEEEEEEEEETTEE--------EEEEEEEEEEEEC--------SSSCEEECSCGGG
T ss_pred ---------CCcEEEEeCCCCeEEEEEEEEEEEECCEE--------ecceEEEEEEecC--------CCcCEEEEccccc
Confidence 47999999999988999999999998654 6789999998763 4589999999754
Q ss_pred --------hHHHHhhhcCCCC-ceeEEeecCCCCCcceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEccEEee
Q 011139 232 --------SVISQLASRGITP-RVFSHCLKGQGNGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQLLS 298 (492)
Q Consensus 232 --------s~~~~l~~~g~i~-~~FS~~l~~~~~~~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~g~~~~ 298 (492)
+++.+|++||+|+ ++||+||++.+...|+|+|||+|+ +++.|+|+. ...+|.|.+++|.|+++.+.
T Consensus 132 ~~~~~~~~~~~~~L~~qg~i~~~~Fs~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~~~v~l~~i~v~g~~~~ 210 (342)
T 2qzx_A 132 EATEFDYDNLPISLRNQGIIGKAAYSLYLNSAEASTGQIIFGGIDKAKYSGSLVDLPIT-SEKKLTVGLRSVNVRGRNVD 210 (342)
T ss_dssp CSSSSCCCCHHHHHHHTTSSSSSEEEEECCCTTCSEEEEEETEEETTSBSSCCEEEECC-CSSSCEEEEEEEEETTEEEE
T ss_pred cCCCccCccHHHHHHHCCCcCccEEEEEeCCCCCCCeEEEECccchhhEecceEEEecc-CCceEEEEEeEEEECCEecC
Confidence 7899999999996 899999997656789999999984 689999998 45699999999999998874
Q ss_pred cCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEEEecCCcEEE
Q 011139 299 IDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMV 378 (492)
Q Consensus 299 ~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg~~~~ 378 (492)
. ...+||||||++++||++++++|.+++.+..... ......|.++|. .+|+|+|+|.||++++
T Consensus 211 ~---------~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~C~---~~p~i~f~f~~g~~~~ 273 (342)
T 2qzx_A 211 A---------NTNVLLDSGTTISYFTRSIVRNILYAIGAQMKFD-----SAGNKVYVADCK---TSGTIDFQFGNNLKIS 273 (342)
T ss_dssp E---------EEEEEECTTCSSEEECHHHHHHHHHHHTCEEEEC-----TTSCEEEEECTT---CCCEEEEEETTTEEEE
T ss_pred C---------CcCEEEeCCCCCEEcCHHHHHHHHHHhCCeeeec-----cCCCcEEEEECC---CCCcEEEEECCCcEEE
Confidence 2 2469999999999999999999999998764311 112347999996 3899999997789999
Q ss_pred ecCCceEEEeeee--CCceEEEEEEEecCCCceeeCceeeecEEEEEECCCCEEEEEeCCCCCCcceeec
Q 011139 379 LKPEEYLIHLGFY--DGAAMWCIGFEKSPGGVSILGDLVLKDKIFVYDLARQRVGWANYDCSLSVNVSIT 446 (492)
Q Consensus 379 l~p~~yi~~~~~~--~~~~~c~l~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~c~~~~~~~~~ 446 (492)
||+++|+++.... ++...|.++|+.. +.||||++|||++|+|||++++|||||+++|+.+.+++.+
T Consensus 274 i~~~~~~~~~~~~~~~~~~~C~~~i~~~--~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~~~~~i~~i 341 (342)
T 2qzx_A 274 VPVSEFLFQTYYTSGKPFPKCEVRIRES--EDNILGDNFLRSAYVVYNLDDKKISMAPVKYTSESDIVAI 341 (342)
T ss_dssp EEGGGGEECCBCTTSCBCSSEEESEEEC--SSCEECHHHHTTEEEEEETTTTEEEEEEBCCCSCCCEEEC
T ss_pred EcHHHhcccccccCCCCCCccEEEEecC--CCcEeChHhhhcEEEEEECCCCEEEEEeeCCCCCCCeEEc
Confidence 9999999874211 1234688888875 4699999999999999999999999999999998888765
No 8
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=100.00 E-value=4.1e-58 Score=458.15 Aligned_cols=305 Identities=27% Similarity=0.420 Sum_probs=258.3
Q ss_pred ceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCC--CCCCCCC--CCCCCcCCCCccCCCCCcCceecCCCccccCccCCC
Q 011139 76 IGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCS--SCSNCPQ--NSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTT 151 (492)
Q Consensus 76 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~--~C~~C~~--~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~ 151 (492)
++.|+++|+||||+|+|.|+|||||+++||+|. .|..|.. ....|..++.|||++|+|++..
T Consensus 11 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~-------------- 76 (334)
T 1j71_A 11 GPSYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSAQNL-------------- 76 (334)
T ss_dssp SSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGSSCCBCGGGCTTCEEE--------------
T ss_pred CcEEEEEEEEcCCCcEEEEEEcCCCCCEEEecCCCCCcCcccccccccccCCCcCCcccCCCcccC--------------
Confidence 479999999999999999999999999999976 6764421 0112333589999999999743
Q ss_pred CCCCCCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCC
Q 011139 152 ATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDL 231 (492)
Q Consensus 152 ~~~c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~ 231 (492)
+|.|.++|++|+.+.|.+++|+|+|++.. +.++.|||+.... ..+||||||++..
T Consensus 77 ---------~~~~~i~Yg~Gs~~~G~~~~D~v~~g~~~--------~~~~~fg~~~~~~--------~~~GilGLg~~~~ 131 (334)
T 1j71_A 77 ---------NQDFSIEYGDLTSSQGSFYKDTVGFGGIS--------IKNQQFADVTTTS--------VDQGIMGIGFTAD 131 (334)
T ss_dssp ---------EEEEEEEBTTSCEEEEEEEEEEEEETTEE--------EEEEEEEEEEEES--------SSSCEEECSCGGG
T ss_pred ---------CCceEEEECCCCEEEEEEEEEEEEECCEE--------EccEEEEEEEecC--------CCccEEEEcCCcc
Confidence 47999999999988999999999998654 6789999998763 4589999999754
Q ss_pred --------hHHHHhhhcCCCC-ceeEEeecCCCCCcceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEccEEee
Q 011139 232 --------SVISQLASRGITP-RVFSHCLKGQGNGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQLLS 298 (492)
Q Consensus 232 --------s~~~~l~~~g~i~-~~FS~~l~~~~~~~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~g~~~~ 298 (492)
+++++|++||+|+ ++||+||++.....|+|+|||+|+ +++.|+|+. ...+|.|.+++|.|+++.+.
T Consensus 132 ~~~~~~~~~~~~~L~~qg~i~~~~Fs~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~~~v~l~~i~v~g~~~~ 210 (334)
T 1j71_A 132 EAGYNLYDNVPVTLKKQGIINKNAYSLYLNSEDASTGKIIFGGVDNAKYTGTLTALPVT-SSVELRVHLGSINFDGTSVS 210 (334)
T ss_dssp SSTTCCCCCHHHHHHHTTSCSSSEEEEECCCTTCSEEEEEETEEETTSEEEEEEEEECC-CSSSCEEEEEEEEETTEEEE
T ss_pred cCccccCCcHHHHHHHCCCCCccEEEEEeCCCCCCCeEEEEeeechHHccCceEEEEcc-CCCeEEEEEeEEEECCEecc
Confidence 7899999999996 899999997656789999999985 579999998 45699999999999998874
Q ss_pred cCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEE-ecCCCcccCCeEEEEecCCcEE
Q 011139 299 IDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYL-VSNSVSEIFPQVSLNFEGGASM 377 (492)
Q Consensus 299 ~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~-v~c~~~~~~p~i~f~f~gg~~~ 377 (492)
. +..+||||||++++||++++++|.+++.+... .....|. ++|. .+|+|+|+|.+|+++
T Consensus 211 ~---------~~~~iiDSGTt~~~lP~~~~~~l~~~~~~~~~--------~~~~~~~~~~C~---~~p~i~f~f~~g~~~ 270 (334)
T 1j71_A 211 T---------NADVVLDSGTTITYFSQSTADKFARIVGATWD--------SRNEIYRLPSCD---LSGDAVFNFDQGVKI 270 (334)
T ss_dssp E---------EEEEEECTTCSSEEECHHHHHHHHHHHTCEEE--------TTTTEEECSSSC---CCSEEEEEESTTCEE
T ss_pred C---------CccEEEeCCCCcEecCHHHHHHHHHHcCCccc--------CCCceEEEEcCC---CCCceEEEEcCCcEE
Confidence 2 24699999999999999999999999987642 2334688 9996 389999999778999
Q ss_pred EecCCceEEEeeeeCCceEEEEEEEecCCCceeeCceeeecEEEEEECCCCEEEEEeCCCCCCcceee
Q 011139 378 VLKPEEYLIHLGFYDGAAMWCIGFEKSPGGVSILGDLVLKDKIFVYDLARQRVGWANYDCSLSVNVSI 445 (492)
Q Consensus 378 ~l~p~~yi~~~~~~~~~~~c~l~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~c~~~~~~~~ 445 (492)
+||+++|+++.. ....|.++|+.. +.||||++|||++|+|||++++|||||+++|+.+++|+.
T Consensus 271 ~i~~~~y~~~~~---~~~~C~~~i~~~--~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~~~~~i~~ 333 (334)
T 1j71_A 271 TVPLSELILKDS---DSSICYFGISRN--DANILGDNFLRRAYIVYDLDDKTISLAQVKYTSSSDISA 333 (334)
T ss_dssp EEEGGGGEEECS---SSSCEEESEEEC--TTCEECHHHHTTEEEEEETTTTEEEEEEECCCSCCCEEE
T ss_pred EECHHHheeecC---CCCeeEEEEeEC--CCcEEChHhhccEEEEEECCCCEEEEEecCCCCccceEE
Confidence 999999999842 123488888875 469999999999999999999999999999998888875
No 9
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=100.00 E-value=5.3e-58 Score=459.28 Aligned_cols=313 Identities=26% Similarity=0.427 Sum_probs=260.3
Q ss_pred ceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCC--CCCCCCC--CCCCcCCCCccCCCCCcCceecCCCccccCccCCC
Q 011139 76 IGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSS--CSNCPQN--SGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTT 151 (492)
Q Consensus 76 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~--C~~C~~~--~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~ 151 (492)
++.|+++|+||||+|++.|++||||+++||++.. |..|... ...|..++.|+|++|+|++..
T Consensus 11 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~-------------- 76 (342)
T 3pvk_A 11 QVTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSASQDL-------------- 76 (342)
T ss_dssp SSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGTTCCBCGGGCTTCEEE--------------
T ss_pred CcEEEEEEEEcCCCcEEEEEEECCCcceEEEcCCCCCcccccccccCCCCCCCcCCCccCcceeec--------------
Confidence 4699999999999999999999999999999764 7544321 112333589999999999754
Q ss_pred CCCCCCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCC-
Q 011139 152 ATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGD- 230 (492)
Q Consensus 152 ~~~c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~- 230 (492)
+|.|.+.|++|+.+.|.+++|+|+|++.. +.++.|||+.... ..+||||||++.
T Consensus 77 ---------~~~~~i~Yg~gs~~~G~~~~D~v~ig~~~--------v~~~~fg~~~~~~--------~~~GilGLg~~~~ 131 (342)
T 3pvk_A 77 ---------NTPFKIGYGDGSSSQGTLYKDTVGFGGVS--------IKNQVLADVDSTS--------IDQGILGVGYKTN 131 (342)
T ss_dssp ---------EEEEEEECSSSCEEEEEEEEEEEEETTEE--------EEEEEEEEEEEES--------SSSCEEECSCGGG
T ss_pred ---------CCeEEEEecCCCeEEEEEEEEEEEECCEE--------ecceEEEEEEccC--------CCccEEEecCccc
Confidence 47999999999989999999999999754 6789999998764 458999999986
Q ss_pred ------ChHHHHhhhcCCCC-ceeEEeecCCCCCcceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEccEEeec
Q 011139 231 ------LSVISQLASRGITP-RVFSHCLKGQGNGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQLLSI 299 (492)
Q Consensus 231 ------~s~~~~l~~~g~i~-~~FS~~l~~~~~~~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~g~~~~~ 299 (492)
.+++++|++||+|+ ++||+||++.+...|+|+|||+|+ +++.|+|+. ...+|.|++++|.|+++.+..
T Consensus 132 ~~~~~~~~~~~~L~~qg~i~~~~fs~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~~~v~l~~i~v~g~~~~~ 210 (342)
T 3pvk_A 132 EAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDAATGQIIFGGVDNAKYSGSLIALPVT-SDRELRISLGSVEVSGKTINT 210 (342)
T ss_dssp CSSCSSCCHHHHHHHTTSSSSSEEEEECCCTTCSEEEEEETEEETTSBSSCCEEEECC-CSSSCEEEEEEEEETTEEEEE
T ss_pred cccccCCcHHHHHHhcCCCCCceEEEEeCCCCCCCcEEEECccCccceeeeeEEeecC-ccceEEEEEeEEEECCEEecC
Confidence 46999999999996 899999998766789999999994 689999998 456999999999999998753
Q ss_pred CcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEEEecCCcEEEe
Q 011139 300 DPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVL 379 (492)
Q Consensus 300 ~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg~~~~l 379 (492)
+ +..++|||||++++||++++++|.+++.+..... .....+|.++|. ..|+|+|+|.+|.+++|
T Consensus 211 ~--------~~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~C~---~~p~i~f~f~~g~~~~v 274 (342)
T 3pvk_A 211 D--------NVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQD-----SNGNSFYEVDCN---LSGDVVFNFSKNAKISV 274 (342)
T ss_dssp E--------EEEEEECTTCSSEEECHHHHHHHHHHTTCEEEEC-----TTSCEEEEECSC---CCSEEEEEESTTCEEEE
T ss_pred C--------CceEEEeCCCCCeecCHHHHHHHHHHcCCeeccc-----CCCceEEEEecC---CCCceEEEECCCCEEEE
Confidence 2 3579999999999999999999999998765321 123457999997 45999999966899999
Q ss_pred cCCceEEEeeeeCC--ceEEEEEEEecCCCceeeCceeeecEEEEEECCCCEEEEEeCCCCCCcceeec
Q 011139 380 KPEEYLIHLGFYDG--AAMWCIGFEKSPGGVSILGDLVLKDKIFVYDLARQRVGWANYDCSLSVNVSIT 446 (492)
Q Consensus 380 ~p~~yi~~~~~~~~--~~~c~l~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~c~~~~~~~~~ 446 (492)
|+++|+++....++ ...|.++|++. +.||||++|||++|+|||++++|||||+++|+++.++..+
T Consensus 275 p~~~~~~~~~~~~g~~~~~C~~~i~~~--~~~ilG~~fl~~~y~vfD~~~~~igfA~~~~~~~s~iv~i 341 (342)
T 3pvk_A 275 PASEFAASLQGDDGQPYDKCQLLFDVN--DANILGDNFLRSAYIVYDLDDNEISLAQVKYTSASSISAL 341 (342)
T ss_dssp EGGGGEEC----------CEEESEEEC--TTCEECHHHHTTEEEEEETTTTEEEEEEBCCCSCCCEEEC
T ss_pred cHHHheeeccccCCCcCCeeEEEEeeC--CCeEeCHHHHhcEEEEEECCCCEEEEEecCCCCCCCEEEe
Confidence 99999987432122 35688899874 6899999999999999999999999999999988887654
No 10
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=100.00 E-value=2.4e-58 Score=457.67 Aligned_cols=299 Identities=28% Similarity=0.454 Sum_probs=255.6
Q ss_pred ccceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCC--CCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCCC
Q 011139 74 FLIGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCS--NCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTT 151 (492)
Q Consensus 74 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~--~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~ 151 (492)
+.++.|+++|+||||+|++.|++||||+++||+|..|. .|..+ +.|||++|+|++..
T Consensus 11 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~-------~~y~~~~SsT~~~~-------------- 69 (323)
T 3cms_A 11 YLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNH-------QRFDPRKSSTFQNL-------------- 69 (323)
T ss_dssp ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTS-------CCBCGGGCTTCEEE--------------
T ss_pred ccCCEEEEEEEECCCCeEEEEEEeCCccceEEcCCCCCcccccCC-------CCCCCccCCCeEEC--------------
Confidence 45689999999999999999999999999999999994 58765 89999999999743
Q ss_pred CCCCCCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCC
Q 011139 152 ATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDL 231 (492)
Q Consensus 152 ~~~c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~ 231 (492)
+|.|.++|++|+ +.|.+++|+|+|++.. +.++.|||+..+.+.. +.....+||||||++..
T Consensus 70 ---------~~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~--------~~~~~fg~~~~~~~~~-~~~~~~~GilGLg~~~~ 130 (323)
T 3cms_A 70 ---------GKPLSIHYGTGS-MQGILGYDTVTVSNIV--------DIQQTVGLSTQEPGDF-FTYAEFDGILGMAYPSL 130 (323)
T ss_dssp ---------EEEEEEEETTEE-EEEEEEEEEEEETTEE--------EEEEEEEEEEECCSHH-HHHSSCSEEEECSCGGG
T ss_pred ---------CcEEEEEeCCCC-eEEEEEEEEEEECCeE--------EeccEEEEEEeccccc-ccccCCceEEecCcchh
Confidence 478999999998 7999999999998754 6789999999875521 11235799999999754
Q ss_pred ------hHHHHhhhcCCCC-ceeEEeecCCCCCcceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEccEEeecC
Q 011139 232 ------SVISQLASRGITP-RVFSHCLKGQGNGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQLLSID 300 (492)
Q Consensus 232 ------s~~~~l~~~g~i~-~~FS~~l~~~~~~~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~g~~~~~~ 300 (492)
+++++|++||+|+ ++||+||++... .|+|+|||+|+ +++.|+|+. ...+|.|.+++|+|+++.+..
T Consensus 131 s~~~~~~~~~~l~~q~~i~~~~FS~~l~~~~~-~G~l~fGg~d~~~~~g~l~~~p~~-~~~~~~v~l~~i~v~~~~~~~- 207 (323)
T 3cms_A 131 ASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQ-ESMLTLGAIDPSYYTGSLHWVPVT-VQQYWQFTVDSVTISGVVVAC- 207 (323)
T ss_dssp SCTTCCCHHHHHHHTTCSSSSEEEEECCTTSS-CEEEEESCCCGGGEEEEEEEEECS-SBTTBEEEEEEEEETTEEEES-
T ss_pred hccCCCCHHHHHHHCCCCCCCEEEEEECCCCC-CEEEEECCCChhhccCceEEEECc-cCCeEEEEEeeEEECCEEeec-
Confidence 4899999999985 899999998644 39999999995 689999998 568999999999999988743
Q ss_pred cccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEEEecCCcEEEec
Q 011139 301 PSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVLK 380 (492)
Q Consensus 301 ~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg~~~~l~ 380 (492)
.....+||||||+++++|++++++|.+++++.. ...+.|.++|...+.+|+|+|+| +|++++|+
T Consensus 208 ------~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~---------~~~g~~~~~C~~~~~~P~i~f~f-~g~~~~i~ 271 (323)
T 3cms_A 208 ------EGGCQAILDTGTSKLVGPSSDILNIQQAIGATQ---------NQYGEFDIDCDNLSYMPTVVFEI-NGKMYPLT 271 (323)
T ss_dssp ------TTCEEEEECTTCCSEEECHHHHHHHHHHHTCEE---------ETTTEEEECTTCTTTSCCEEEEE-TTEEEEEC
T ss_pred ------CCCcEEEEecCCccEeCCHHHHHHHHHHhCCee---------cCCCcEEEECCCCccCceEEEEE-CCEEEEEC
Confidence 235679999999999999999999999986542 12356899999878899999999 78999999
Q ss_pred CCceEEEeeeeCCceEEEEEEEecC-CCceeeCceeeecEEEEEECCCCEEEEEeCC
Q 011139 381 PEEYLIHLGFYDGAAMWCIGFEKSP-GGVSILGDLVLKDKIFVYDLARQRVGWANYD 436 (492)
Q Consensus 381 p~~yi~~~~~~~~~~~c~l~i~~~~-~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~ 436 (492)
|++|+++ +...|.++|+..+ .+.||||++|||++|+|||++++|||||+++
T Consensus 272 ~~~y~~~-----~~~~C~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 323 (323)
T 3cms_A 272 PSAYTSQ-----DQGFCTSGFQSENHSQKWILGDVFIREYYSVFDRANNLVGLAKAI 323 (323)
T ss_dssp HHHHEEE-----ETTEEEESEEEC---CCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred HHHhccC-----CCCEEEEEEEeCCCCCcEEECHHHhhceEEEEECCCCEEEEEECC
Confidence 9999997 2456888898864 5689999999999999999999999999874
No 11
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=100.00 E-value=6.1e-58 Score=456.11 Aligned_cols=298 Identities=26% Similarity=0.469 Sum_probs=256.4
Q ss_pred ccceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCCC--CCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCCC
Q 011139 74 FLIGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSN--CPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTT 151 (492)
Q Consensus 74 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~--C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~ 151 (492)
+.++.|+++|+||||+|+|.|++||||+++||+|..|.. |..+ +.|||++|+|++.
T Consensus 10 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~~-------~~y~~~~SsT~~~--------------- 67 (329)
T 1dpj_A 10 YLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLH-------SKYDHEASSSYKA--------------- 67 (329)
T ss_dssp ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTS-------CCBCGGGCTTCEE---------------
T ss_pred cCCCEEEEEEEECCCCcEEEEEEeCCCcCeEEecCCCCCcccCCc-------CcCCcccCcCeEE---------------
Confidence 446899999999999999999999999999999999986 7665 7899999999963
Q ss_pred CCCCCCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccC-CCCCCCCCcceeeecCCCC
Q 011139 152 ATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTG-DLSKTDKAIDGIFGFGQGD 230 (492)
Q Consensus 152 ~~~c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~~~GIlGLg~~~ 230 (492)
.+|.|.+.|++|+ +.|.+++|+|+|++.. +.++.|||++.+.+ .| .....+||||||++.
T Consensus 68 --------~~~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~--------~~~~~fg~~~~~~~~~f--~~~~~~GilGLg~~~ 128 (329)
T 1dpj_A 68 --------NGTEFAIQYGTGS-LEGYISQDTLSIGDLT--------IPKQDFAEATSEPGLTF--AFGKFDGILGLGYDT 128 (329)
T ss_dssp --------EEEEEEEEETTEE-EEEEEEEEEEEETTEE--------EEEEEEEEEEECCHHHH--TTCSCSEEEECSCGG
T ss_pred --------CCcEEEEEECCce-EEEEEEEEEEEECCeE--------ECCeEEEEEEecCcccc--ccCCcceEEEeCCch
Confidence 4579999999995 8999999999998654 67899999998765 22 234679999999976
Q ss_pred Ch------HHHHhhhcCCCC-ceeEEeecCCC---CCcceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEccEE
Q 011139 231 LS------VISQLASRGITP-RVFSHCLKGQG---NGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQL 296 (492)
Q Consensus 231 ~s------~~~~l~~~g~i~-~~FS~~l~~~~---~~~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~g~~ 296 (492)
.+ ++.+|++||+|+ ++||+||++.. ..+|+|+|||+|+ +++.|+|+. .+.+|.|.+++|+|+++.
T Consensus 129 ~s~~~~~~~~~~l~~qg~i~~~~Fs~~l~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~~~v~l~~i~v~~~~ 207 (329)
T 1dpj_A 129 ISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVR-RKAYWEVKFEGIGLGDEY 207 (329)
T ss_dssp GCGGGCCCHHHHHHHTTCCSSSEEEEEECCGGGTCSSSEEEEESSCCGGGEEEEEEEEECS-SBTTBEEEEEEEEETTEE
T ss_pred hhccCCCCHHHHHHhcCCcCCCEEEEEecCCCCCCCCCcEEEEcCCChhhcCCceEEEEcC-CCceEEEEeeeEEECCeE
Confidence 54 678999999996 89999998642 2479999999994 689999998 568999999999999988
Q ss_pred eecCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEEEecCCcE
Q 011139 297 LSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGAS 376 (492)
Q Consensus 297 ~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg~~ 376 (492)
+.. .+..+||||||++++||++++++|.+++++. ....++|.++|.....+|+|+|+| +|++
T Consensus 208 ~~~--------~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~---------~~~~g~~~~~C~~~~~~P~i~f~f-~g~~ 269 (329)
T 1dpj_A 208 AEL--------ESHGAAIDTGTSLITLPSGLAEMINAEIGAK---------KGWTGQYTLDCNTRDNLPDLIFNF-NGYN 269 (329)
T ss_dssp EEC--------SSCEEEECTTCSCEEECHHHHHHHHHHHTCE---------ECTTSSEEECGGGGGGCCCEEEEE-TTEE
T ss_pred ecC--------CCccEEeeCCCCcEECCHHHHHHHHHHhCCc---------cCCCCeEEEECCCCCcCCcEEEEE-CCEE
Confidence 742 3568999999999999999999999998654 134578999999888899999999 6899
Q ss_pred EEecCCceEEEeeeeCCceEEEEEEEecC-----CCceeeCceeeecEEEEEECCCCEEEEEeCC
Q 011139 377 MVLKPEEYLIHLGFYDGAAMWCIGFEKSP-----GGVSILGDLVLKDKIFVYDLARQRVGWANYD 436 (492)
Q Consensus 377 ~~l~p~~yi~~~~~~~~~~~c~l~i~~~~-----~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~ 436 (492)
++|+|++|+++.. ..|.++|+..+ .+.||||++|||++|+|||++++|||||+++
T Consensus 270 ~~i~~~~y~~~~~-----~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 329 (329)
T 1dpj_A 270 FTIGPYDYTLEVS-----GSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKAI 329 (329)
T ss_dssp EEECTTTSEEEET-----TEEEECEEECCCCTTTCSEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEECHHHhEecCC-----CEEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEEEEECC
Confidence 9999999999742 46777898752 4689999999999999999999999999975
No 12
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=100.00 E-value=3.5e-58 Score=456.34 Aligned_cols=300 Identities=29% Similarity=0.474 Sum_probs=258.6
Q ss_pred CccceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCCC--CCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCC
Q 011139 73 PFLIGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSN--CPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQT 150 (492)
Q Consensus 73 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~--C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~ 150 (492)
++.+..|+++|+||||||++.|++||||+++||+|..|.. |..+ +.|||++|+|++..
T Consensus 7 n~~d~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~-------~~y~~~~SsT~~~~------------- 66 (320)
T 4aa9_A 7 SYLDSQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNH-------HRFDPRKSSTFRNL------------- 66 (320)
T ss_dssp -CCCCCCEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTS-------CCBCGGGCTTCEEE-------------
T ss_pred eccCCEEEEEEEECCCCeEEEEEEeCCCCceEEcCCCCCccccCCC-------CCCCCCCCcCeEcC-------------
Confidence 4557899999999999999999999999999999999984 7665 89999999999754
Q ss_pred CCCCCCCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCC
Q 011139 151 TATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGD 230 (492)
Q Consensus 151 ~~~~c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~ 230 (492)
+|.|.+.|++|+ +.|.+++|+|+|++.. +.++.|||+....+... .....+||||||++.
T Consensus 67 ----------~~~~~i~Yg~gs-~~G~~~~D~v~ig~~~--------v~~~~fg~~~~~~~~~~-~~~~~~GilGLg~~~ 126 (320)
T 4aa9_A 67 ----------GKPLSIHYGTGS-MEGFLGYDTVTVSNIV--------DPNQTVGLSTEQPGEVF-TYSEFDGILGLAYPS 126 (320)
T ss_dssp ----------EEEEEEEETTEE-EEEEEEEEEEEETTEE--------EEEEEEEEEEECCSHHH-HSCCCSEEEECSCGG
T ss_pred ----------CcEEEEEECCcE-EEEEEEEEEEEECCEe--------ecCeEEEEEEEcccccc-cccCcccEEecCccc
Confidence 478999999999 7999999999999754 67899999998765311 134579999999875
Q ss_pred C------hHHHHhhhcCCCC-ceeEEeecCCCCCcceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEccEEeec
Q 011139 231 L------SVISQLASRGITP-RVFSHCLKGQGNGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQLLSI 299 (492)
Q Consensus 231 ~------s~~~~l~~~g~i~-~~FS~~l~~~~~~~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~g~~~~~ 299 (492)
. +++++|++||+|+ ++||+||++. ...|+|+|||+|+ +++.|+|+. ...+|.|++++|.|+++.+..
T Consensus 127 ~s~~~~~~~~~~l~~~g~i~~~~Fs~~l~~~-~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~w~v~l~~i~v~~~~~~~ 204 (320)
T 4aa9_A 127 LASEYSVPVFDNMMDRHLVARDLFSVYMDRN-GQGSMLTLGAIDPSYYTGSLHWVPVT-LQQYWQFTVDSVTINGVAVAC 204 (320)
T ss_dssp GSCTTCCCHHHHHHHTTCSSSSEEEEECCSS-SSCCEEEETCCCGGGEEEEEEEEECS-SBTTBEEEECEEEETTEEEES
T ss_pred ccccCCCCHHHHHHhCCCCCCceEEEEeCCC-CCCeEEEEcccCHHHccCceEEEEcc-cCCceEEEEeEEEECCEEecc
Confidence 4 4899999999995 8999999986 5689999999995 689999997 578999999999999988753
Q ss_pred CcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEEEecCCcEEEe
Q 011139 300 DPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVL 379 (492)
Q Consensus 300 ~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg~~~~l 379 (492)
.....++|||||++++||++++++|.+++++.. ...+.|.++|+....+|+|+|+| +|++++|
T Consensus 205 -------~~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~---------~~~g~~~~~C~~~~~~p~i~f~f-~g~~~~l 267 (320)
T 4aa9_A 205 -------VGGCQAILDTGTSVLFGPSSDILKIQMAIGATE---------NRYGEFDVNCGNLRSMPTVVFEI-NGRDYPL 267 (320)
T ss_dssp -------TTCEEEEECTTCSSEEEEHHHHHHHHHHTTCEE---------CTTSCEEECGGGGGGCCCEEEEE-TTEEEEE
T ss_pred -------CCCcEEEEECCCCcEECCHHHHHHHHHHhCCcc---------cCCCcEEEeCCCCCcCceEEEEE-CCEEEEE
Confidence 234679999999999999999999999986542 23467999999888899999999 7899999
Q ss_pred cCCceEEEeeeeCCceEEEEEEEecC-CCceeeCceeeecEEEEEECCCCEEEEEeCC
Q 011139 380 KPEEYLIHLGFYDGAAMWCIGFEKSP-GGVSILGDLVLKDKIFVYDLARQRVGWANYD 436 (492)
Q Consensus 380 ~p~~yi~~~~~~~~~~~c~l~i~~~~-~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~ 436 (492)
++++|+.+ +...|.++|+... .+.||||++|||++|+|||++++|||||+++
T Consensus 268 ~~~~y~~~-----~~~~C~~~i~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfA~a~ 320 (320)
T 4aa9_A 268 SPSAYTSK-----DQGFCTSGFQGDNNSELWILGDVFIREYYSVFDRANNRVGLAKAI 320 (320)
T ss_dssp CHHHHEEE-----ETTEEEESEEEETTCCCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred CHHHhccC-----CCCeEEEEEEcCCCCCcEEEChHHhcceEEEEECCCCEEEEEecC
Confidence 99999976 2456888898765 4579999999999999999999999999975
No 13
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=100.00 E-value=3.2e-57 Score=449.84 Aligned_cols=299 Identities=25% Similarity=0.426 Sum_probs=253.3
Q ss_pred cceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCCCCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCCCCCC
Q 011139 75 LIGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQ 154 (492)
Q Consensus 75 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~ 154 (492)
.++.|+++|+||||+|+|.|++||||+++||+|..|..| .+ .++.|+|++|+|++.
T Consensus 13 ~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~c-~~-----~~~~y~~~~SsT~~~------------------ 68 (325)
T 2apr_A 13 NDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNC-GS-----GQTKYDPNQSSTYQA------------------ 68 (325)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCSSC-CT-----TSCCBCGGGCTTCEE------------------
T ss_pred CCCEEEEEEEECCCCeEEEEEEcCCCCCEEEccCCCchH-hc-----CCCCCCcccCCCeee------------------
Confidence 357999999999999999999999999999999999988 22 248999999999974
Q ss_pred CCCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCC---
Q 011139 155 CPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDL--- 231 (492)
Q Consensus 155 c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~--- 231 (492)
..|.|.++|++|+.+.|.+++|+|+|++.. +.++.|||+...++.|. ....+||||||++..
T Consensus 69 -----~~~~~~i~Yg~Gs~~~G~~~~D~v~~g~~~--------v~~~~fg~~~~~~~~f~--~~~~~GilGLg~~~~s~~ 133 (325)
T 2apr_A 69 -----DGRTWSISYGDGSSASGILAKDNVNLGGLL--------IKGQTIELAKREAASFA--SGPNDGLLGLGFDTITTV 133 (325)
T ss_dssp -----EEEEEEEECTTSCEEEEEEEEEEEEETTEE--------EEEEEEEEEEEECHHHH--TSSCSEEEECSCGGGCSS
T ss_pred -----CCCEEEEEECCCCCEEEEEEEEEEEECCEE--------ECcEEEEEEeccCcccc--cCCCceEEEeCCcccccc
Confidence 357999999999988999999999998754 67899999998765432 234799999999754
Q ss_pred ----hHHHHhhhcCCCC-ceeEEeecCC-CCCcceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEccEEeecCc
Q 011139 232 ----SVISQLASRGITP-RVFSHCLKGQ-GNGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQLLSIDP 301 (492)
Q Consensus 232 ----s~~~~l~~~g~i~-~~FS~~l~~~-~~~~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~g~~~~~~~ 301 (492)
+++++|++||+|+ ++||+||++. ....|+|+|||+|+ +++.|+|+.+...+|.|.+++|+|+++ +.
T Consensus 134 ~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~v~l~~i~vg~~-~~--- 209 (325)
T 2apr_A 134 RGVKTPMDNLISQGLISRPIFGVYLGKAKNGGGGEYIFGGYDSTKFKGSLTTVPIDNSRGWWGITVDRATVGTS-TV--- 209 (325)
T ss_dssp TTCCCHHHHHHHTTSCSSSEEEEEECCGGGTCCEEEEETCCCGGGBCSCCEEEECBCTTSSCEEEECEEEETTE-EE---
T ss_pred cCCCCHHHHHHhcCCCCCceEEEEecCCCCCCCCEEEEccCCchhccCceEEEEccCCCCEEEEEEeEEEECCE-ec---
Confidence 4899999999885 8999999653 34589999999983 789999998667899999999999993 21
Q ss_pred ccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEEEecCCcEEEecC
Q 011139 302 SAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVLKP 381 (492)
Q Consensus 302 ~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg~~~~l~p 381 (492)
.....+||||||++++||+++|+++++++.+.+.. .+.|.++|.. ..+|+|+|+| +|.+++||+
T Consensus 210 -----~~~~~~iiDSGTs~~~lP~~~~~~~~~~~~~~~~~---------~g~~~~~C~~-~~~p~i~f~f-~g~~~~ip~ 273 (325)
T 2apr_A 210 -----ASSFDGILDTGTTLLILPNNIAASVARAYGASDNG---------DGTYTISCDT-SAFKPLVFSI-NGASFQVSP 273 (325)
T ss_dssp -----ECCEEEEECTTCSSEEEEHHHHHHHHHHHTCEECS---------SSCEEECSCG-GGCCCEEEEE-TTEEEEECG
T ss_pred -----CCCceEEEecCCccEECCHHHHHHHHHHHhcccCC---------CCeEEEECCC-CCCCcEEEEE-CCEEEEECH
Confidence 23467999999999999999999999999876532 1458899984 4489999999 556999999
Q ss_pred CceEEEeeeeCCceEEEEEEEecCCCceeeCceeeecEEEEEECCCCEEEEEeCC
Q 011139 382 EEYLIHLGFYDGAAMWCIGFEKSPGGVSILGDLVLKDKIFVYDLARQRVGWANYD 436 (492)
Q Consensus 382 ~~yi~~~~~~~~~~~c~l~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~ 436 (492)
++|+++.. ...|..+|+..+.+.||||++|||++|+|||++++|||||+++
T Consensus 274 ~~~~~~~~----~~~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 324 (325)
T 2apr_A 274 DSLVFEEF----QGQCIAGFGYGNWGFAIIGDTFLKNNYVVFNQGVPEVQIAPVA 324 (325)
T ss_dssp GGGEEEEE----TTEEEESEEEESSSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred HHEEEcCC----CCeEEEEEEcCCCCCEEECHHHhcceEEEEECCCCEEEEEecC
Confidence 99998642 4568778887656789999999999999999999999999874
No 14
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=100.00 E-value=1.8e-57 Score=451.75 Aligned_cols=298 Identities=27% Similarity=0.452 Sum_probs=257.2
Q ss_pred ccceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCC--CCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCCC
Q 011139 74 FLIGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCS--NCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTT 151 (492)
Q Consensus 74 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~--~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~ 151 (492)
+.++.|+++|+||||+|++.|++||||+++||+|..|. .|..+ +.|||++|+|++..
T Consensus 9 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~-------~~y~~~~SsT~~~~-------------- 67 (324)
T 1am5_A 9 EADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNH-------NKFKPRQSSTYVET-------------- 67 (324)
T ss_dssp ETTTEEEEEEEETTTTEEEEEEEETTCCCEEECBTTCCSHHHHTS-------CCBCGGGCTTCEEE--------------
T ss_pred CCCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCcccccCC-------CcCCCccCCCeEeC--------------
Confidence 44689999999999999999999999999999999997 48765 89999999999743
Q ss_pred CCCCCCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCC
Q 011139 152 ATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDL 231 (492)
Q Consensus 152 ~~~c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~ 231 (492)
+|.|.+.|++|+ +.|.+++|+|+|++.. +.++.|||+..+.+.+ +.....+||||||++..
T Consensus 68 ---------~~~~~i~Yg~Gs-~~G~~~~D~v~~g~~~--------~~~~~fg~~~~~~~~~-~~~~~~~GilGLg~~~~ 128 (324)
T 1am5_A 68 ---------GKTVDLTYGTGG-MRGILGQDTVSVGGGS--------DPNQELGESQTEPGPF-QAAAPFDGILGLAYPSI 128 (324)
T ss_dssp ---------EEEEEEECSSCE-EEEEEEEEEEESSSSC--------EEEEEEEEEEECCSTT-TTTCSSSEEEECSCGGG
T ss_pred ---------CcEEEEEECCCC-eEEEEEECceeECCcE--------EcccEEEEEEeccccc-ccCCCCceEEecCCccc
Confidence 479999999998 5999999999998654 6789999999886642 12457899999999754
Q ss_pred ------hHHHHhhhcCCCC-ceeEEeecCCCCCcceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEccEEeecC
Q 011139 232 ------SVISQLASRGITP-RVFSHCLKGQGNGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQLLSID 300 (492)
Q Consensus 232 ------s~~~~l~~~g~i~-~~FS~~l~~~~~~~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~g~~~~~~ 300 (492)
+++++|++||+|+ ++||+||++.+...|+|+|||+|+ +++.|+|+. ...+|.|.+++|+|+++.+..
T Consensus 129 s~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~~~v~l~~i~v~~~~~~~- 206 (324)
T 1am5_A 129 AAAGAVPVFDNMGSQSLVEKDLFSFYLSGGGANGSEVMLGGVDNSHYTGSIHWIPVT-AEKYWQVALDGITVNGQTAAC- 206 (324)
T ss_dssp CGGGCCCHHHHHHHTTCSSSSEEEEECCSTTCSCEEEEESSCCGGGBCSCCEEEEEE-EETTEEEEECEEEETTEECCC-
T ss_pred cccCCCchHHhHHhcCCCCCCEEEEEecCCCCCCcEEEECccCHHHcCCceEEEecC-CCcEEEEEEeEEEECCceeec-
Confidence 4889999999985 899999998755689999999994 789999998 468999999999999987521
Q ss_pred cccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEEEecCCcEEEec
Q 011139 301 PSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVLK 380 (492)
Q Consensus 301 ~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg~~~~l~ 380 (492)
.. ..+||||||++++||++++++|.+++++. . ..+.|.++|...+.+|+|+|+| +|++++|+
T Consensus 207 ------~~-~~aiiDSGTt~~~lp~~~~~~l~~~~~~~-~---------~~g~~~~~C~~~~~~P~i~f~f-~g~~~~i~ 268 (324)
T 1am5_A 207 ------EG-CQAIVDTGTSKIVAPVSALANIMKDIGAS-E---------NQGEMMGNCASVQSLPDITFTI-NGVKQPLP 268 (324)
T ss_dssp ------CC-EEEEECTTCSSEEECTTTHHHHHHHHTCE-E---------CCCCEECCTTSSSSSCCEEEEE-TTEEEEEC
T ss_pred ------cC-ceEEEecCCccEECCHHHHHHHHHHhCCc-c---------cCCcEEEeCCCcccCCcEEEEE-CCEEEEEC
Confidence 12 67999999999999999999999998764 1 2345889999878899999999 78999999
Q ss_pred CCceEEEeeeeCCceEEEEEEEecC-----CCceeeCceeeecEEEEEECCCCEEEEEeCC
Q 011139 381 PEEYLIHLGFYDGAAMWCIGFEKSP-----GGVSILGDLVLKDKIFVYDLARQRVGWANYD 436 (492)
Q Consensus 381 p~~yi~~~~~~~~~~~c~l~i~~~~-----~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~ 436 (492)
|++|+++. ...|.++|+..+ .+.||||++|||++|+|||++++|||||+++
T Consensus 269 ~~~y~~~~-----~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~a~ 324 (324)
T 1am5_A 269 PSAYIEGD-----QAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNNKVGFAPAA 324 (324)
T ss_dssp HHHHEEES-----SSCEEECEEECCSCCSSSCEEEECHHHHHHEEEEEETTTTEEEEEEBC
T ss_pred HHHhcccC-----CCeEEEEEEECccCCCCCCcEEEChHHhccEEEEEECCCCEEEEEECC
Confidence 99999874 446888998753 4589999999999999999999999999974
No 15
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=100.00 E-value=5.9e-58 Score=458.78 Aligned_cols=311 Identities=23% Similarity=0.415 Sum_probs=262.3
Q ss_pred eeeeccCCCCCCccceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCC----CCCCCCCCCcCCCCccCCCCCcCcee
Q 011139 62 VVEFPVQGSSDPFLIGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCS----NCPQNSGLGIQLNFFDTSSSSTARIV 137 (492)
Q Consensus 62 ~~~~~~~~~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~----~C~~~~~~~~~~~~y~~~~SsT~~~v 137 (492)
.+..|+.+ +.+..|+++|+||||+|++.|++||||+++||+|..|. .|..+ +.|+|++|+|++.
T Consensus 7 ~~~~~l~n----~~d~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~-------~~y~~~~SsT~~~- 74 (341)
T 3k1w_A 7 TSSVILTN----YMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYH-------KLFDASDSSSYKH- 74 (341)
T ss_dssp CEEEEEEE----ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTCHHHHTS-------CCBCGGGCTTCEE-
T ss_pred CccccceE----ccCCEEEEEEEEcCCCcEEEEEEeCCCcceEEccCCCCCCCCcccCC-------CCCCCCcCcCeeE-
Confidence 44555543 45689999999999999999999999999999999997 46654 8999999999964
Q ss_pred cCCCccccCccCCCCCCCCCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCC
Q 011139 138 SCSDPLCASEIQTTATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTD 217 (492)
Q Consensus 138 ~C~~~~C~~~~~~~~~~c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~ 217 (492)
..|.|.+.|++|+ +.|.+++|+|+|++.. + ++.|||+....+.. +..
T Consensus 75 ----------------------~~~~~~i~Yg~gs-~~G~~~~D~v~ig~~~--------v-~~~fg~~~~~~~~~-~~~ 121 (341)
T 3k1w_A 75 ----------------------NGTELTLRYSTGT-VSGFLSQDIITVGGIT--------V-TQMFGEVTEMPALP-FML 121 (341)
T ss_dssp ----------------------EEEEEEEEETTEE-EEEEEEEEEEEETTEE--------E-EEEEEEEEECCHHH-HTT
T ss_pred ----------------------CCCEEEEEECCcE-EEEEEEEEEEEECCce--------e-eEEEEEEEEccccc-ccc
Confidence 4579999999999 8999999999998755 6 89999999876531 123
Q ss_pred CCcceeeecCCCCCh------HHHHhhhcCCCC-ceeEEeecCCC----CCcceEEECCCCC----CCeEEeeCCCCCCc
Q 011139 218 KAIDGIFGFGQGDLS------VISQLASRGITP-RVFSHCLKGQG----NGGGILVLGEILE----PSIVYSPLVPSKPH 282 (492)
Q Consensus 218 ~~~~GIlGLg~~~~s------~~~~l~~~g~i~-~~FS~~l~~~~----~~~G~l~fGg~d~----~~l~~~p~~~~~~~ 282 (492)
...+||||||++..+ ++++|++||+|+ ++||+||++.. ..+|+|+|||+|+ +++.|+|+. ...+
T Consensus 122 ~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~Fs~~l~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~ 200 (341)
T 3k1w_A 122 AEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLI-KTGV 200 (341)
T ss_dssp CSSSEEEECSCGGGCGGGCCCHHHHHHHHTCBSSSEEEEEECCCC-----CCEEEEESSCCGGGEEEEEEEEECS-STTS
T ss_pred CCcceEEECCchhhcccCCCCHHHHHHHCCCCCCCEEEEEEeCCCCcCCCCCCEEEECccChHHccCceEEEecC-CCCE
Confidence 567999999997654 899999999996 89999999864 3489999999995 689999998 6789
Q ss_pred ceEEEeEEEEccEEeecCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcc
Q 011139 283 YNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSE 362 (492)
Q Consensus 283 ~~v~l~~i~v~g~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~ 362 (492)
|.|.+++|.|+++.+.. .....++|||||++++||++++++|.+++++... . .+ |.++|+...
T Consensus 201 w~v~l~~i~v~~~~~~~-------~~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~--------~-~g-~~~~C~~~~ 263 (341)
T 3k1w_A 201 WQIQMKGVSVGSSTLLC-------EDGCLALVDTGASYISGSTSSIEKLMEALGAKKR--------L-FD-YVVKCNEGP 263 (341)
T ss_dssp CEEEECCEEETTEEEEC-------TTCEEEEECTTCSSEEECHHHHHHHHHHHTCEEC--------S-SC-EEEEGGGGG
T ss_pred EEEEEeEEEECCEEeec-------CCCCEEEEECCCChhcCCHHHHHHHHHHcCCeec--------C-CC-eEEeCCCCC
Confidence 99999999999987532 2356799999999999999999999999976531 1 23 999999878
Q ss_pred cCCeEEEEecCCcEEEecCCceEEEeeeeCCceEEEEEEEecC-----CCceeeCceeeecEEEEEECCCCEEEEEeCCC
Q 011139 363 IFPQVSLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFEKSP-----GGVSILGDLVLKDKIFVYDLARQRVGWANYDC 437 (492)
Q Consensus 363 ~~p~i~f~f~gg~~~~l~p~~yi~~~~~~~~~~~c~l~i~~~~-----~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~c 437 (492)
.+|+|+|+| +|++++|++++|+++... .+...|.++|+..+ .+.||||++|||++|+|||++++|||||+++.
T Consensus 264 ~~p~i~f~f-~g~~~~l~~~~~~~~~~~-~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~a~~ 341 (341)
T 3k1w_A 264 TLPDISFHL-GGKEYTLTSADYVFQESY-SSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALARH 341 (341)
T ss_dssp GCCCEEEEE-TTEEEEECHHHHBCCSCC-CTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEECC
T ss_pred cCCcEEEEE-CCEEEEECHHHheeEccC-CCCCeEEeEEEecccCCCCCCeEEEChHHhcceEEEEeCCCCEEEEEECCC
Confidence 899999999 789999999999987532 23567888898742 56899999999999999999999999999863
No 16
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=100.00 E-value=3e-57 Score=451.12 Aligned_cols=301 Identities=29% Similarity=0.512 Sum_probs=256.9
Q ss_pred ccceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCCC--CCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCCC
Q 011139 74 FLIGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSN--CPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTT 151 (492)
Q Consensus 74 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~--C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~ 151 (492)
+.++.|+++|+||||+|++.|++||||+++||+|..|.. |..+ +.|||++|+|++..
T Consensus 9 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~~-------~~y~~~~SsT~~~~-------------- 67 (329)
T 1htr_B 9 YMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSH-------SRFNPSESSTYSTN-------------- 67 (329)
T ss_dssp GTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTS-------CCBCGGGCTTCEEE--------------
T ss_pred EcCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCCC-------CcCCCccCCCeEEC--------------
Confidence 345899999999999999999999999999999999974 8765 89999999999743
Q ss_pred CCCCCCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCC
Q 011139 152 ATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDL 231 (492)
Q Consensus 152 ~~~c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~ 231 (492)
+|.|.++|++|+ +.|.+++|+|+|++.. +.++.|||+..+.+.+. .....+||||||++..
T Consensus 68 ---------~~~~~i~Yg~gs-~~G~~~~D~v~~g~~~--------~~~~~fg~~~~~~~~~~-~~~~~~GilGLg~~~~ 128 (329)
T 1htr_B 68 ---------GQTFSLQYGSGS-LTGFFGYDTLTVQSIQ--------VPNQEFGLSENEPGTNF-VYAQFDGIMGLAYPAL 128 (329)
T ss_dssp ---------EEEEEEEETTEE-EEEEEEEEEEEETTEE--------EEEEEEEEESSCSSGGG-GGCSCCEEEECCCCSC
T ss_pred ---------CcEEEEEeCCCC-eEEEEEeeeEEEcceE--------ECceEEEEEEEcccccc-ccCCCceEEecCCCcc
Confidence 479999999998 5999999999998654 67899999998765321 2346799999999865
Q ss_pred ------hHHHHhhhcCCCC-ceeEEeecCCCCC-cceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEccEEeec
Q 011139 232 ------SVISQLASRGITP-RVFSHCLKGQGNG-GGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQLLSI 299 (492)
Q Consensus 232 ------s~~~~l~~~g~i~-~~FS~~l~~~~~~-~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~g~~~~~ 299 (492)
+++++|++||+|+ ++||+||++.... +|+|+|||+|+ +++.|+|+. ...+|.|++++|+|+++.+..
T Consensus 129 s~~~~~~~~~~l~~qg~i~~~~Fs~~L~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~~~v~l~~i~v~~~~~~~ 207 (329)
T 1htr_B 129 SVDEATTAMQGMVQEGALTSPVFSVYLSNQQGSSGGAVVFGGVDSSLYTGQIYWAPVT-QELYWQIGIEEFLIGGQASGW 207 (329)
T ss_dssp CCTTCCSHHHHHHHTTCSSSSEEEEEECSSCSSEEEEEEESSCCGGGEEEEEEEEEBC-SSSSCEEEECEEEETTEECCT
T ss_pred cccCCCCHHHHHHhcCCCCCCEEEEEEcCCCCCCCcEEEEcccCHHHcCCceEEEECC-CCceEEEEEeEEEECCceeee
Confidence 3899999999985 8999999986444 89999999995 689999998 568999999999999987531
Q ss_pred CcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEEEecCCcEEEe
Q 011139 300 DPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVL 379 (492)
Q Consensus 300 ~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg~~~~l 379 (492)
......+||||||++++||++++++|.+++.+... ..+.|.++|...+.+|+|+|+| +|++++|
T Consensus 208 ------~~~~~~aiiDSGTt~~~lp~~~~~~l~~~~~~~~~---------~~g~~~~~C~~~~~~P~i~f~f-~g~~~~i 271 (329)
T 1htr_B 208 ------CSEGCQAIVDTGTSLLTVPQQYMSALLQATGAQED---------EYGQFLVNCNSIQNLPSLTFII-NGVEFPL 271 (329)
T ss_dssp ------TTTCEEEEECTTCCSEEEEGGGHHHHHHHHTCEEC---------TTSCEEECGGGGGGSCCEEEEE-TTEEEEE
T ss_pred ------cCCCceEEEecCCccEECCHHHHHHHHHHhCCeec---------CCCeEEEeCCCcccCCcEEEEE-CCEEEEE
Confidence 12456799999999999999999999999876531 2245889999878899999999 7899999
Q ss_pred cCCceEEEeeeeCCceEEEEEEEecC-----CC-ceeeCceeeecEEEEEECCCCEEEEEeCC
Q 011139 380 KPEEYLIHLGFYDGAAMWCIGFEKSP-----GG-VSILGDLVLKDKIFVYDLARQRVGWANYD 436 (492)
Q Consensus 380 ~p~~yi~~~~~~~~~~~c~l~i~~~~-----~~-~~iLG~~fl~~~y~vfD~~~~~igfa~~~ 436 (492)
+|++|+++.. +.|.++|+..+ .. .||||++|||++|+|||++++|||||+++
T Consensus 272 ~~~~y~~~~~-----g~C~~~~~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~ 329 (329)
T 1htr_B 272 PPSSYILSNN-----GYCTVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNRVGFATAA 329 (329)
T ss_dssp CHHHHEEECS-----SCEEESEEEECCCCTTSSCEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred CHHHhcccCC-----CEEEEEEEECCCCCCCCCceEEEChHHhccEEEEEECCCCEEEEEeCC
Confidence 9999999752 36777898753 34 79999999999999999999999999874
No 17
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=100.00 E-value=3.5e-57 Score=457.27 Aligned_cols=297 Identities=23% Similarity=0.373 Sum_probs=255.4
Q ss_pred ccceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCC--CCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCCC
Q 011139 74 FLIGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCS--NCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTT 151 (492)
Q Consensus 74 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~--~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~ 151 (492)
+.++.|+++|+||||+|+|.|+|||||+++||+|..|. .|..+ +.|||++|+|++..
T Consensus 59 ~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~-------~~y~~~~SsT~~~~-------------- 117 (375)
T 1miq_A 59 VANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIK-------NLYDSSKSKSYEKD-------------- 117 (375)
T ss_dssp TBCEEEECCCEETTTTEECCEEEETTCCCEEEEBTTCCSSGGGGS-------CCBCGGGCTTCEEE--------------
T ss_pred CCCCEEEEEEEECCCCeEEEEEEeCCCcceEEccCCCCcccccCC-------CcCCCccCCceEEC--------------
Confidence 45689999999999999999999999999999999996 47665 89999999999743
Q ss_pred CCCCCCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeee----ccCCCCCCCCCcceeeecC
Q 011139 152 ATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTY----QTGDLSKTDKAIDGIFGFG 227 (492)
Q Consensus 152 ~~~c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~----~~~~~~~~~~~~~GIlGLg 227 (492)
+|.|.++|++|+ +.|.+++|+|+|++.. +.+ .|||+.. ++ .| .....+||||||
T Consensus 118 ---------~~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~~--------v~~-~Fg~~~~~~~~~~-~f--~~~~~dGilGLg 175 (375)
T 1miq_A 118 ---------GTKVDITYGSGT-VKGFFSKDLVTLGHLS--------MPY-KFIEVTDTDDLEP-IY--SSVEFDGILGLG 175 (375)
T ss_dssp ---------EEEEEEEETTEE-EEEEEEEEEEEETTEE--------EEE-EEEEEEECGGGTT-HH--HHSCCCEEEECS
T ss_pred ---------CcEEEEEeCCCe-EEEEEEEEEEEEcCce--------ECc-EEEEEEecccccc-cc--ccCCCceEEeCC
Confidence 479999999999 7999999999998754 667 9999998 44 22 124679999999
Q ss_pred CCCC------hHHHHhhhcCCCC-ceeEEeecCCCCCcceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEccEE
Q 011139 228 QGDL------SVISQLASRGITP-RVFSHCLKGQGNGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQL 296 (492)
Q Consensus 228 ~~~~------s~~~~l~~~g~i~-~~FS~~l~~~~~~~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~g~~ 296 (492)
++.. +++++|++||+|+ ++||+||++.+..+|+|+|||+|+ +++.|+|+. ...+|.|.++ |.|+++.
T Consensus 176 ~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~w~v~l~-i~v~g~~ 253 (375)
T 1miq_A 176 WKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLN-HDLYWQIDLD-VHFGKQT 253 (375)
T ss_dssp SCCTTCSSCCCHHHHHHHTTSSSSSEEEEECCTTCTTEEEEEESSCCGGGEEEEEEEEEBS-SSSSSEEEEE-EEETTEE
T ss_pred CCcccccCCCCHHHHHHhccCcCCCEEEEEecCCCCCCeEEEEcccCHHHcCCceEEEecC-CCceEEEEEE-EEECCEE
Confidence 9865 3899999999996 899999998655689999999994 689999997 5789999999 9999987
Q ss_pred eecCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEEEecCCcE
Q 011139 297 LSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGAS 376 (492)
Q Consensus 297 ~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg~~ 376 (492)
+ ....+||||||+++++|++++++|.+++++.. ....+.|.++|.. ..+|+|+|+| +|++
T Consensus 254 ~----------~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~--------~~~~g~~~~~C~~-~~~P~i~f~f-~g~~ 313 (375)
T 1miq_A 254 M----------EKANVIVDSGTTTITAPSEFLNKFFANLNVIK--------VPFLPFYVTTCDN-KEMPTLEFKS-ANNT 313 (375)
T ss_dssp E----------EEEEEEECTTBSSEEECHHHHHHHHHHHTCEE--------CTTSSCEEEETTC-TTCCCEEEEC-SSCE
T ss_pred c----------ccceEEecCCCccEEcCHHHHHHHHHHhCCcc--------cCCCCeEEEECCC-CCCCcEEEEE-CCEE
Confidence 6 13569999999999999999999999997642 1234568999987 7899999999 7899
Q ss_pred EEecCCceEEEeeeeCCceEEEEEEEecC--CCceeeCceeeecEEEEEECCCCEEEEEeCC
Q 011139 377 MVLKPEEYLIHLGFYDGAAMWCIGFEKSP--GGVSILGDLVLKDKIFVYDLARQRVGWANYD 436 (492)
Q Consensus 377 ~~l~p~~yi~~~~~~~~~~~c~l~i~~~~--~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~ 436 (492)
++|+|++|+++... .+...|.++|++.+ .+.||||++|||++|+|||++++|||||+++
T Consensus 314 ~~l~~~~yi~~~~~-~g~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~riGfA~~~ 374 (375)
T 1miq_A 314 YTLEPEYYMNPILE-VDDTLCMITMLPVDIDSNTFILGDPFMRKYFTVFDYDKESVGFAIAK 374 (375)
T ss_dssp EEECGGGSEEESSS-SSCSEEEESEEECCSSSSEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred EEECHHHhEeeccC-CCCCeEEEEEEECCCCCCcEEECHHHhccEEEEEECCCCEEEEEEcC
Confidence 99999999997532 23457888999876 3789999999999999999999999999975
No 18
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=100.00 E-value=4.6e-57 Score=449.49 Aligned_cols=303 Identities=25% Similarity=0.426 Sum_probs=251.8
Q ss_pred cceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCCCCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCCCCCC
Q 011139 75 LIGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQ 154 (492)
Q Consensus 75 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~ 154 (492)
.++.|+++|+||||+|+|.|+|||||+++||+|..|..|..+ .++.|||++|+|++.+
T Consensus 13 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~-----~~~~y~~~~SsT~~~~----------------- 70 (329)
T 3c9x_A 13 ADSEYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETPKSSAT-----GHAIYTPSKSSTSKKV----------------- 70 (329)
T ss_dssp TCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCHHHHT-----TSCCBCGGGCTTCEEC-----------------
T ss_pred CCCEEEEEEEECCCCeEEEEEEcCCCCCeEEecCCCCccccC-----CCCcCCcccCcCceEc-----------------
Confidence 357999999999999999999999999999999999876432 2389999999999754
Q ss_pred CCCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCC---
Q 011139 155 CPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDL--- 231 (492)
Q Consensus 155 c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~--- 231 (492)
..|.|.++|++|+.+.|.+++|+|+|++.. +.++.|||+...++.+. .....+||||||++..
T Consensus 71 -----~~~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~--------v~~~~fg~~~~~~~~~~-~~~~~~GilGLg~~~~s~~ 136 (329)
T 3c9x_A 71 -----SGASWSISYGDGSSSSGDVYTDKVTIGGFS--------VNTQGVESATRVSTEFV-QDTVISGLVGLAFDSGNQV 136 (329)
T ss_dssp -----TTCBEEEECTTSCEEEEEEEEEEEEETTEE--------EEEEEEEEEEEECHHHH-HCTTCCEEEECSCGGGCCC
T ss_pred -----CCCeEEEEeCCCCcEEEEEEEEEEEECCEE--------EcceEEEEEEecCcccc-ccCCCceeEEeCccccccc
Confidence 347999999999988999999999998754 67899999998765432 1246799999999643
Q ss_pred ------hHHHHhhhcCCCCceeEEeecCCCCCcceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEccEEeecCc
Q 011139 232 ------SVISQLASRGITPRVFSHCLKGQGNGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQLLSIDP 301 (492)
Q Consensus 232 ------s~~~~l~~~g~i~~~FS~~l~~~~~~~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~g~~~~~~~ 301 (492)
+++++|+++ +.+++||+||++. ..|+|+|||+|+ +++.|+|+.+...+|.|++++|+|+++.+.
T Consensus 137 ~~~~~~~~~~~l~~~-i~~~~FS~~l~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~v~l~~i~v~~~~~~--- 210 (329)
T 3c9x_A 137 RPHPQKTWFSNAASS-LAEPLFTADLRHG--QNGSYNFGYIDTSVAKGPVAYTPVDNSQGFWEFTASGYSVGGGKLN--- 210 (329)
T ss_dssp BSSCCCCHHHHHHTT-SSSSEEEEECCSS--SCEEEEESSCCGGGCSSCEEEEECBCTTSSCEEEECCEEETTCCCC---
T ss_pred CCCCCCCHHHHHHHh-cCCCEEEEEecCC--CCcEEEEeCcChhhcccceEEEEccCCCceEEEEEeeEEECCEecc---
Confidence 378899886 3358999999863 589999999994 789999998667899999999999987652
Q ss_pred ccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEEEecCCcEEEecC
Q 011139 302 SAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVLKP 381 (492)
Q Consensus 302 ~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg~~~~l~p 381 (492)
.....+||||||++++||++++++|.+++.+... +...+.|.++|. ..+|+|+|+| +|++++||+
T Consensus 211 -----~~~~~aiiDSGTt~~~lp~~~~~~i~~~i~~a~~-------~~~~~~~~~~C~--~~~P~i~f~f-~g~~~~ip~ 275 (329)
T 3c9x_A 211 -----RNSIDGIADTGTTLLLLDDNVVDAYYANVQSAQY-------DNQQEGVVFDCD--EDLPSFSFGV-GSSTITIPG 275 (329)
T ss_dssp -----SCCEEEEECTTCCSEEECHHHHHHHHTTCTTCEE-------ETTTTEEEEETT--CCCCCEEEEE-TTEEEEECG
T ss_pred -----CCCceEEEECCCCcEeCCHHHHHHHHHhCCCcEE-------cCCCCEEEEECC--CCCCcEEEEE-CCEEEEECH
Confidence 2356799999999999999999999888744321 223456889998 5789999999 689999999
Q ss_pred CceEEEeeeeCCceEEEEEEEecC-CCceeeCceeeecEEEEEECCCCEEEEEeC
Q 011139 382 EEYLIHLGFYDGAAMWCIGFEKSP-GGVSILGDLVLKDKIFVYDLARQRVGWANY 435 (492)
Q Consensus 382 ~~yi~~~~~~~~~~~c~l~i~~~~-~~~~iLG~~fl~~~y~vfD~~~~~igfa~~ 435 (492)
++|+++... ++...|.++|+..+ .+.||||++|||++|+|||++++|||||+.
T Consensus 276 ~~~~~~~~~-~~~~~C~~~i~~~~~~~~~ILG~~fl~~~y~vfD~~~~riGfA~~ 329 (329)
T 3c9x_A 276 DLLNLTPLE-EGSSTCFGGLQSSSGIGINIFGDVALKAALVVFDLGNERLGWAQK 329 (329)
T ss_dssp GGGEEEESS-TTCSEEEESEEECTTTTSEEECHHHHTTEEEEEETTTTEEEEEEC
T ss_pred HHeeeeccC-CCCCeEEEEEEcCCCCCcEEEChHHhccEEEEEECCCCEEeEecC
Confidence 999986421 23467777888765 568999999999999999999999999974
No 19
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=100.00 E-value=1.8e-57 Score=467.42 Aligned_cols=298 Identities=24% Similarity=0.363 Sum_probs=258.8
Q ss_pred CccceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCC--CCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCC
Q 011139 73 PFLIGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCS--NCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQT 150 (492)
Q Consensus 73 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~--~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~ 150 (492)
++.+..|+++|+||||||++.|++||||+++||+|..|. .|..+ +.|||++|+|++.
T Consensus 133 n~~d~~Y~~~I~IGTPpQ~~~vi~DTGSs~lWV~s~~C~s~~C~~~-------~~ydps~SsT~~~-------------- 191 (451)
T 3qvc_A 133 DLANVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCTSESCESK-------NHYDSSKSKTYEK-------------- 191 (451)
T ss_dssp GGBCEEEEEEEEETTTTEEEEEEEESSBCSEEEEBTTCCSGGGTTS-------CCBCGGGCTTCEE--------------
T ss_pred ecCCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCccccCCC-------CCCCCCCCccccc--------------
Confidence 355789999999999999999999999999999999995 58765 8999999999974
Q ss_pred CCCCCCCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeee----ccCCCCCCCCCcceeeec
Q 011139 151 TATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTY----QTGDLSKTDKAIDGIFGF 226 (492)
Q Consensus 151 ~~~~c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~----~~~~~~~~~~~~~GIlGL 226 (492)
.++.|.+.|++|+ +.|.+++|+|++++.. +. +.|||+.. .++ +. ....+|||||
T Consensus 192 ---------~~~~f~i~YgdGs-~~G~~~~Dtv~igg~~--------v~-~~Fg~a~~t~~~~~~-f~--~~~~dGILGL 249 (451)
T 3qvc_A 192 ---------DDTPVKLTSKAGT-ISGIFSKDLVTIGKLS--------VP-YKFIEMTEIVGFEPF-YS--ESDVDGVFGL 249 (451)
T ss_dssp ---------EEEEEEEECSSEE-EEEEEEEEEEEETTEE--------EE-EEEEEEEEEEECTTH-HH--HSCCCEEEEC
T ss_pred ---------CCCEEEEEECCCE-EEEEEEEEEEEECCEE--------EE-EEEEEEEeccccCCC-cc--CCCCCEEEec
Confidence 3579999999999 8999999999999755 66 99999988 554 32 3467999999
Q ss_pred CCCCC------hHHHHhhhcCCCC-ceeEEeecCCCCCcceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEccE
Q 011139 227 GQGDL------SVISQLASRGITP-RVFSHCLKGQGNGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQ 295 (492)
Q Consensus 227 g~~~~------s~~~~l~~~g~i~-~~FS~~l~~~~~~~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~g~ 295 (492)
|++.. +++++|++||+|+ ++||+||++.+..+|+|+|||+|+ +++.|+|+. .+.+|.|+++ |.|+++
T Consensus 250 g~~~~s~~~~~~~~~~L~~qg~I~~~~FS~~L~~~~~~~G~l~fGgiD~s~y~G~l~~~pv~-~~~~w~v~l~-I~Vgg~ 327 (451)
T 3qvc_A 250 GWKDLSIGSIDPYIVELKTQNKIEQAVYSIYLPPENKNKGYLTIGGIEERFFDGPLNYEKLN-HDLMWQVDLD-VHFGNV 327 (451)
T ss_dssp SSBCSSSSCCCCHHHHHHHTTSSSSSEEEEECCTTCTTEEEEEESSCCGGGEEEEEEEEECS-STTSSEEEEE-EEETTE
T ss_pred CCCcccccCCCCHHHHHHHcCCCCCCEEEEEEcCCCCCCCEEEECCcchhhcCCceEEEEcc-cCCeeEEEEE-EEECCc
Confidence 99754 5899999999996 899999998766789999999995 689999998 6789999999 999987
Q ss_pred EeecCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEEEecCCc
Q 011139 296 LLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGA 375 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg~ 375 (492)
. .....++|||||+++++|++++++|.+++++.. ....++|.++|+ ...+|+|+|+| +|.
T Consensus 328 -~---------~~~~~aiiDSGTt~i~lP~~~~~~i~~~i~a~~--------~~~~g~y~v~C~-~~~~P~itf~f-gg~ 387 (451)
T 3qvc_A 328 -S---------SKKANVILDSATSVITVPTEFFNQFVESASVFK--------VPFLSLYVTTCG-NTKLPTLEYRS-PNK 387 (451)
T ss_dssp -E---------EEEEEEEECTTBSSEEECHHHHHHHHTTTTCEE--------CTTSSCEEEETT-CTTCCCEEEEE-TTE
T ss_pred -c---------CCCceEEEeCCCccccCCHHHHHHHHHHcCCee--------cCCCCeEEeeCC-cCcCCcEEEEE-CCE
Confidence 1 124579999999999999999999999886653 233567999998 77899999999 789
Q ss_pred EEEecCCceEEEeeeeCCceEEEEEEEecC--CCceeeCceeeecEEEEEECCCCEEEEEeCC
Q 011139 376 SMVLKPEEYLIHLGFYDGAAMWCIGFEKSP--GGVSILGDLVLKDKIFVYDLARQRVGWANYD 436 (492)
Q Consensus 376 ~~~l~p~~yi~~~~~~~~~~~c~l~i~~~~--~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~ 436 (492)
+++|||++|+.+... .+...|+++|++.+ .+.||||++|||++|+|||++++|||||+++
T Consensus 388 ~i~lp~~~yi~~~~~-~~~~~C~~~i~~~~~~~~~~ILG~~FLr~~YvVfD~~n~rIGfA~ak 449 (451)
T 3qvc_A 388 VYTLEPKQYLEPLEN-IFSALCMLNIVPIDLEKNTFVLGDPFMRKYFTVYDYDNHTVGFALAK 449 (451)
T ss_dssp EEEECHHHHEEECTT-TSTTEEEECEEECCCSTTEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred EEEEcHHHheeeccc-CCCCeEEEEEEeCCCCCCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence 999999999998532 24567999999876 5789999999999999999999999999985
No 20
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=100.00 E-value=7.1e-57 Score=448.13 Aligned_cols=302 Identities=25% Similarity=0.411 Sum_probs=251.6
Q ss_pred cceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCCCCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCCCCCC
Q 011139 75 LIGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQ 154 (492)
Q Consensus 75 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~ 154 (492)
.++.|+++|+||||+|+|.|++||||+++||+|..|..|.. .++.|||++|+|++.++
T Consensus 13 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~------~~~~y~~~~SsT~~~~~---------------- 70 (329)
T 1oew_A 13 LDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEV------XQTIYTPSKSTTAKLLS---------------- 70 (329)
T ss_dssp TCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCGGGC-------CCCBCGGGCTTCEEEE----------------
T ss_pred CCCEEEEEEEECCCCeEEEEEECCCCCCeEEecCCCCcccc------ccCccCCccCccceecC----------------
Confidence 35799999999999999999999999999999999987653 13799999999998653
Q ss_pred CCCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCC---
Q 011139 155 CPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDL--- 231 (492)
Q Consensus 155 c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~--- 231 (492)
.|.|.++|++|+.+.|.+++|+|+|++.. +.++.|||+...++.+. .....+||||||++..
T Consensus 71 ------~~~~~i~Yg~Gs~~~G~~~~D~v~~g~~~--------v~~~~fg~~~~~~~~~~-~~~~~~GilGLg~~~~s~~ 135 (329)
T 1oew_A 71 ------GATWSISYGDGSSSSGDVYTDTVSVGGLT--------VTGQAVESAKKVSSSFT-EDSTIDGLLGLAFSTLNTV 135 (329)
T ss_dssp ------EEEEEEECTTSCEEEEEEEEEEEEETTEE--------EEEEEEEEEEEECHHHH-HCTTCCEEEECSCGGGCCC
T ss_pred ------CCeEEEEeCCCCcEEEEEEEEEEEECCEE--------EeeeEEEEEEecCcccc-ccCCCceEEEecccccccc
Confidence 47999999999988999999999998754 67899999998765432 1246799999999753
Q ss_pred ------hHHHHhhhcCCCCceeEEeecCCCCCcceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEccEEeecCc
Q 011139 232 ------SVISQLASRGITPRVFSHCLKGQGNGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQLLSIDP 301 (492)
Q Consensus 232 ------s~~~~l~~~g~i~~~FS~~l~~~~~~~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~g~~~~~~~ 301 (492)
+++++|+++ +-+++||+||++. ..|+|+|||+|+ +++.|+|+.+.+.+|.|++++|+|+++.+.
T Consensus 136 ~~~~~~~~~~~l~~~-i~~~~FS~~L~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~v~l~~i~v~~~~~~--- 209 (329)
T 1oew_A 136 SPTQQKTFFDNAKAS-LDSPVFTADLGYH--APGTYNFGFIDTTAYTGSITYTAVSTKQGFWEWTSTGYAVGSGTFK--- 209 (329)
T ss_dssp BSSCCCCHHHHHTTT-SSSSEEEEECCSS--SCEEEEESCCCTTSSSSCCEEEECBCTTSSCEEEEEEEEETTSCCE---
T ss_pred CcCCCCCHHHHHHHh-ccCcEEEEEccCC--CCeEEEEeccChHhcccceEEEEccCCCceEEEEEeeEEECCeecc---
Confidence 378999887 3358999999863 589999999994 689999998667899999999999987542
Q ss_pred ccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEEEecCCcEEEecC
Q 011139 302 SAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVLKP 381 (492)
Q Consensus 302 ~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg~~~~l~p 381 (492)
.....+||||||+++++|++++++|.+++.+.. .+...+.|.++|. ..+|+|+|+| ||++++||+
T Consensus 210 -----~~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~a~-------~~~~~g~~~~~C~--~~~P~i~f~f-gg~~~~ip~ 274 (329)
T 1oew_A 210 -----STSIDGIADTGTTLLYLPATVVSAYWAQVSGAK-------SSSSVGGYVFPCS--ATLPSFTFGV-GSARIVIPG 274 (329)
T ss_dssp -----EEEEEEEECTTCCSEEECHHHHHHHHTTSTTCE-------EETTTTEEEEETT--CCCCCEEEEE-TTEEEEECH
T ss_pred -----CCCceEEEeCCCCCEECCHHHHHHHHHhCCCcE-------EcCCCCEEEEECC--CCCCcEEEEE-CCEEEEECH
Confidence 123579999999999999999999998874332 1223456889998 5789999999 889999999
Q ss_pred CceEEEeeeeCCceEEEEEEEecC-CCceeeCceeeecEEEEEEC-CCCEEEEEeC
Q 011139 382 EEYLIHLGFYDGAAMWCIGFEKSP-GGVSILGDLVLKDKIFVYDL-ARQRVGWANY 435 (492)
Q Consensus 382 ~~yi~~~~~~~~~~~c~l~i~~~~-~~~~iLG~~fl~~~y~vfD~-~~~~igfa~~ 435 (492)
++|+++... ++...|.++|+..+ .+.||||++|||++|+|||+ +++|||||+.
T Consensus 275 ~~~~~~~~~-~~~~~C~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~riGfA~~ 329 (329)
T 1oew_A 275 DYIDFGPIS-TGSSSCFGGIQSSAGIGINIFGDVALKAAFVVFNGATTPTLGFASK 329 (329)
T ss_dssp HHHEEEESS-TTCSEEEESEEESTTTSSEEECHHHHTTEEEEEECSSSCEEEEEEC
T ss_pred HHeeeeecC-CCCCeEEEEEEeCCCCCceEEChHHhcCEEEEEECCCCceEEEecC
Confidence 999986421 23467878888765 56899999999999999999 9999999974
No 21
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=100.00 E-value=6.4e-57 Score=467.40 Aligned_cols=313 Identities=27% Similarity=0.442 Sum_probs=256.2
Q ss_pred ccceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCC---CCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCC
Q 011139 74 FLIGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCS---NCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQT 150 (492)
Q Consensus 74 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~---~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~ 150 (492)
+.++.|+++|+||||+|+|.|+|||||+++||+|..|. .|..+ +.|||++|+||+
T Consensus 49 ~~~~~Y~~~i~IGTP~Q~~~v~~DTGSs~lWV~~~~C~~~~~C~~~-------~~y~~~~SsT~~--------------- 106 (478)
T 1qdm_A 49 YMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLH-------SRYKAGASSTYK--------------- 106 (478)
T ss_dssp GGGCCEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCSCGGGGGS-------CCBCGGGCTTCB---------------
T ss_pred ccCCEEEEEEEECCCCeEEEEEEcCCCcceEEecCCCCCCccccCC-------CCCCcccCCCee---------------
Confidence 45689999999999999999999999999999999996 47765 899999999996
Q ss_pred CCCCCCCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCC
Q 011139 151 TATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGD 230 (492)
Q Consensus 151 ~~~~c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~ 230 (492)
..++.|.+.|++|+ +.|++++|+|+|++.. +.++.|||+..+.+.. +....++||||||++.
T Consensus 107 --------~~~~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~~--------v~~~~Fg~a~~~~~~~-f~~~~~dGIlGLg~~~ 168 (478)
T 1qdm_A 107 --------KNGKPAAIQYGTGS-IAGYFSEDSVTVGDLV--------VKDQEFIEATKEPGIT-FLVAKFDGILGLGFKE 168 (478)
T ss_dssp --------CCCCEEEEEETTEE-EEEEEEEEEEEETTEE--------EEEEEEEEEEECCBSH-HHHCSSSEEEECSCGG
T ss_pred --------eCCcEEEEEcCCCC-eEEEEEEEEEEECCeE--------ECCEEEEEEEecCCcc-cccccccceecccccc
Confidence 34679999999998 8999999999998754 6789999998866531 1124679999999987
Q ss_pred Ch------HHHHhhhcCCCC-ceeEEeecCCC--CCcceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEccEEe
Q 011139 231 LS------VISQLASRGITP-RVFSHCLKGQG--NGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQLL 297 (492)
Q Consensus 231 ~s------~~~~l~~~g~i~-~~FS~~l~~~~--~~~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~g~~~ 297 (492)
.+ ++.+|++||+|+ ++||+||++.. ..+|+|+|||+|+ +++.|+|+. ..++|.|.+++|.|+++.+
T Consensus 169 ~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~G~l~~~pv~-~~~~w~v~l~~i~v~g~~~ 247 (478)
T 1qdm_A 169 ISVGKAVPVWYKMIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGEHTYVPVT-QKGYWQFDMGDVLVGGKST 247 (478)
T ss_dssp GCGGGCCCHHHHHTTTTCCSSSEEEEECCCC-----CEEEEETCCCTTSEEEEEEEEEEE-EETTEEEEECCEEETTEEC
T ss_pred cccCCCCcHHHHHHHCCCCCCCEEEEEeecCCCCCCCeEEEeCCcCHhhcCCCceEEecc-CCCeEEEEEeEEEECCEEE
Confidence 65 678999999996 89999998752 3589999999995 579999997 5689999999999999886
Q ss_pred ecCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhc----------cC-------------------------
Q 011139 298 SIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVS----------QS------------------------- 342 (492)
Q Consensus 298 ~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~----------~~------------------------- 342 (492)
.+. ..+..+||||||+++++|++++++|.+++++... ++
T Consensus 248 ~~~------~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~~s~~Ck~~v~~yg~~ii~~l~~~~~p~~vC~~iglC~ 321 (478)
T 1qdm_A 248 GFC------AGGCAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQYGQQILDLLLAETQPKKICSQVGLCT 321 (478)
T ss_dssp STT------TTCEEEEECSSCCSEEECHHHHHHHHHHHTCCCBCCHHHHHHHHHTHHHHHHHHHTTCCHHHHHHHTTCC-
T ss_pred eec------CCCceEEEcCCCCceeCCHHHHHHHHHHhCccccccccccchhhhhhhHHHHhhhhccChhhhhccccccc
Confidence 542 2356799999999999999999999998864310 00
Q ss_pred --CC----------------------------------------------------------CCCCCCCceEEecCCCcc
Q 011139 343 --VT----------------------------------------------------------PTMSKGKQCYLVSNSVSE 362 (492)
Q Consensus 343 --~~----------------------------------------------------------~~~~~~~~~y~v~c~~~~ 362 (492)
.. .......+-|.++|+...
T Consensus 322 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~C~~Ce~~v~~~~~~l~~n~t~~~I~~~~~~~C~~~~~~~g~~~v~C~~~~ 401 (478)
T 1qdm_A 322 FDGTRGVSAGIRSVVDDEPVKSNGLRADPMCSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGSLG 401 (478)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCBCCSSSCCEECGGGGT
T ss_pred cCccccccccccccccccccccccccccccchHHHHHHHHHHHHHhccccHHHHHHHHHHHhhccCCCCCeEEeeccccc
Confidence 00 000112356889999888
Q ss_pred cCCeEEEEecCCcEEEecCCceEEEeeeeCCceEEEEEEEecC-----CCceeeCceeeecEEEEEECCCCEEEEEeC
Q 011139 363 IFPQVSLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFEKSP-----GGVSILGDLVLKDKIFVYDLARQRVGWANY 435 (492)
Q Consensus 363 ~~p~i~f~f~gg~~~~l~p~~yi~~~~~~~~~~~c~l~i~~~~-----~~~~iLG~~fl~~~y~vfD~~~~~igfa~~ 435 (492)
.+|+|+|+| ||++++|+|++|+++... ++...|..+|+..+ .+.||||+.|||++|+|||++++|||||++
T Consensus 402 ~lP~i~f~~-gg~~~~l~p~~yi~~~~~-~~~~~C~~~~~~~~~~~~~~~~~ILGd~fl~~~y~vfD~~~~rIGfA~a 477 (478)
T 1qdm_A 402 SMPDIEFTI-GGKKFALKPEEYILKVGE-GAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGFAKA 477 (478)
T ss_dssp TCCCEEEEE-TTEEEEECHHHHEEECSC-GGGCCEEESEEECCCCTTSCSEEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred ccccEEEEE-CCEEEEEChHHhEEEccC-CCCCeEEEEEEeccCCCCCCCcEEECHHHhccEEEEEECCCCEEEEEeC
Confidence 999999999 789999999999998532 12346777888643 467999999999999999999999999986
No 22
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=100.00 E-value=2.5e-56 Score=456.21 Aligned_cols=345 Identities=21% Similarity=0.362 Sum_probs=263.5
Q ss_pred eeeccCCCCCCccceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCCCCCCCCCCCcCCCCccCCCCCcCceecCCCc
Q 011139 63 VEFPVQGSSDPFLIGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDP 142 (492)
Q Consensus 63 ~~~~~~~~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~ 142 (492)
+.+|+.++ +.++.|+++|+||||+|+|.|+|||||+++||+|..| .+|+|++.+.|.++
T Consensus 10 ~~~pl~~~---~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~~------------------~~Sst~~~~~C~s~ 68 (403)
T 3aup_A 10 VVLPVQND---GSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQ------------------YSSKTYQAPFCHST 68 (403)
T ss_dssp EEEEEEEC---TTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSC------------------CCCSSCBCCCTTBH
T ss_pred EEEeeecC---CCCceEEEEEECCCCCceeEEEEECCCCceeECCCCC------------------CCCCCCCccCCCCc
Confidence 44666632 3468999999999999999999999999999998653 35889999999999
Q ss_pred cccCccCCC--------CCCCCCCCCCCeeeeeeC-CCCeeEEEEEEEEEEeccccCCc---ccccccccEEEeeeeecc
Q 011139 143 LCASEIQTT--------ATQCPSGSNQCSYSFEYG-DGSGTSGSYIYDTLYFDAILGES---LIANSTALIVFGCSTYQT 210 (492)
Q Consensus 143 ~C~~~~~~~--------~~~c~~~~~~~~~~i~Y~-~g~~~~G~~~~D~v~i~~~~~~~---~~~~~~~~~~fg~~~~~~ 210 (492)
.|.....+. ...|. +..|.|.+.|+ +|+.+.|.+++|+|+|++..+.. .....+.++.|||+..+.
T Consensus 69 ~C~~~~~~~c~~c~~~~~s~~~--~~~~~~~~~Y~~d~~~~~G~~~~Dtv~ig~~~g~~~~~~~~~~v~~~~Fg~~~~~~ 146 (403)
T 3aup_A 69 QCSRANTHQCLSCPAASRPGCH--KNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFL 146 (403)
T ss_dssp HHHHTTCCCEEECSSSCBTTBC--SSEEEEEEEETTTTEEEEEEEEEEEEEEEECCC----CCCEEEEEEEEEEEECGGG
T ss_pred cccCccccCccccCCCCCCCCC--CCcceeEeecCCCCceeeEEEEEEEEEecccCCccccccccccccCEEEECCcccc
Confidence 998654431 12343 36799999998 78889999999999998743221 000136789999999875
Q ss_pred CC-CCCCCCCcceeeecCCCCChHHHHhhhcCCCCceeEEeecCCCCCcceEEECCCCC-------C-----CeEEeeCC
Q 011139 211 GD-LSKTDKAIDGIFGFGQGDLSVISQLASRGITPRVFSHCLKGQGNGGGILVLGEILE-------P-----SIVYSPLV 277 (492)
Q Consensus 211 ~~-~~~~~~~~~GIlGLg~~~~s~~~~l~~~g~i~~~FS~~l~~~~~~~G~l~fGg~d~-------~-----~l~~~p~~ 277 (492)
.. + .....+||||||++..+++.||+++.+.+++||+||.+....+|+|+||| |+ + ++.|+|++
T Consensus 147 ~~~~--~~~~~dGIlGLg~~~~s~~~ql~~~~~~~~~FS~~L~~~~~~~G~l~fGg-d~~~~~~~~G~~~~~~l~~~Pl~ 223 (403)
T 3aup_A 147 VQKG--LPRNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCLSRYPTSKGAIIFGD-APNNMRQFQNQDIFHDLAFTPLT 223 (403)
T ss_dssp GSSS--SSTTCCEEEECSSSTTSHHHHHHHHHTCCSEEEEECCSCTTSCEEEEESC-HHHHC--CTTCCTTTTEEEEECE
T ss_pred cccC--CCCCCceEEECCCCCcCHHHHHHhhcCCCCeEEEEcCCCCCCCeeEEECC-CchhccccccccccCceeecccc
Confidence 43 2 13578999999999999999998665567899999998656789999999 62 4 89999998
Q ss_pred CC-CCcceEEEeEEEEccEEe-ecCccccc--ccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCC-CCCCCCCc
Q 011139 278 PS-KPHYNLNLHGITVNGQLL-SIDPSAFA--ASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVT-PTMSKGKQ 352 (492)
Q Consensus 278 ~~-~~~~~v~l~~i~v~g~~~-~~~~~~~~--~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~-~~~~~~~~ 352 (492)
.. ..+|.|+|++|+|+++.+ .++...+. ......+||||||++++||++++++|.++|.+++..... ........
T Consensus 224 ~~~~~~y~v~l~~i~v~g~~~~~~~~~~~~~~~~g~~~aiiDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~ 303 (403)
T 3aup_A 224 ITLQGEYNVRVNSIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPFGL 303 (403)
T ss_dssp ECTTSCEEECEEEEEETTEEEECC------------CCEEECSSCSSEEECHHHHHHHHHHHHHTSCGGGEECCCTTCSC
T ss_pred cCCCCcceEEEEEEEECCEEcccCChhHeeeccCCCCCEEEECCCccEEeCHHHHHHHHHHHHHHhccccccCCCCCCCc
Confidence 54 379999999999999988 65544432 123457999999999999999999999999876543211 11112334
Q ss_pred eEEecCCCcccCCeEEEEecCC--cEEEecCCceEEEeeeeCCceEEEEEEEecCC---CceeeCceeeecEEEEEECCC
Q 011139 353 CYLVSNSVSEIFPQVSLNFEGG--ASMVLKPEEYLIHLGFYDGAAMWCIGFEKSPG---GVSILGDLVLKDKIFVYDLAR 427 (492)
Q Consensus 353 ~y~v~c~~~~~~p~i~f~f~gg--~~~~l~p~~yi~~~~~~~~~~~c~l~i~~~~~---~~~iLG~~fl~~~y~vfD~~~ 427 (492)
| ++|+..+.+|+|+|+|.|+ ++|+|++++|+++.. +...|. +|+..+. +.||||+.|||++|+|||+++
T Consensus 304 c--~~c~~~~~~P~i~f~f~g~~~~~~~l~~~~y~~~~~---~~~~C~-~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~ 377 (403)
T 3aup_A 304 C--FNSNKINAYPSVDLVMDKPNGPVWRISGEDLMVQAQ---PGVTCL-GVMNGGMQPRAEITLGARQLEENLVVFDLAR 377 (403)
T ss_dssp E--ECGGGCCCCCCEEEEESSTTCCEEEECHHHHEEEC------CEEE-CEEECCSCCSSSEEECHHHHTTSCEEEETTT
T ss_pred e--EECCCcCcCCcEEEEEcCCCceEEEEcccceEEEcC---CCeEEE-EEEcCCCCCCCcEEEChHHhcCeEEEEECCC
Confidence 5 4787667899999999655 699999999999742 233455 9988752 579999999999999999999
Q ss_pred CEEEE-------EeCCCCC
Q 011139 428 QRVGW-------ANYDCSL 439 (492)
Q Consensus 428 ~~igf-------a~~~c~~ 439 (492)
+|||| ++++|+.
T Consensus 378 ~rIGf~A~~~~~~~~~C~~ 396 (403)
T 3aup_A 378 SRVGFSTSSLHSHGVKCAD 396 (403)
T ss_dssp TEEEEESSCGGGGTCCGGG
T ss_pred CEEEEecccccccCCCccc
Confidence 99999 5556653
No 23
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=100.00 E-value=1.3e-56 Score=446.20 Aligned_cols=298 Identities=16% Similarity=0.263 Sum_probs=254.1
Q ss_pred CccceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCC--CC--CCCCCCCcCCCCccCCCCCcCceecCCCccccCcc
Q 011139 73 PFLIGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCS--NC--PQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEI 148 (492)
Q Consensus 73 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~--~C--~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~ 148 (492)
++.+..|+++|+|| +|+|.|++||||+++||+|..|. .| ..+ +.|||++| |++.
T Consensus 13 n~~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~-------~~y~~~~S-T~~~------------ 70 (330)
T 1yg9_A 13 VFINTQYAGITKIG--NQNFLTVFDSTSCNVVVASQECVGGACVCPNL-------QKYEKLKP-KYIS------------ 70 (330)
T ss_dssp EEECTTSEEEEEET--TEEEEEEEETTCCCEEEECTTCCSGGGGSTTC-------CCCCCSSC-EEEE------------
T ss_pred cCCCCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCCCccCccccc-------CccCCCCC-ceEE------------
Confidence 45568999999999 89999999999999999999997 58 554 89999999 9964
Q ss_pred CCCCCCCCCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCC
Q 011139 149 QTTATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQ 228 (492)
Q Consensus 149 ~~~~~~c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~ 228 (492)
.++.|.+.|++|+ +.|.+++|+|+|++.. +.++.|||+......|. ....+||||||+
T Consensus 71 -----------~~~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~~--------~~~~~fg~~~~~~~~f~--~~~~~GilGLg~ 128 (330)
T 1yg9_A 71 -----------DGNVQVKFFDTGS-AVGRGIEDSLTISQLT--------TSQQDIVLADELSQEVC--ILSADVVVGIAA 128 (330)
T ss_dssp -----------EEEEEEEETTTEE-EEEEEEEEEEEETTEE--------EEEEEEEEEEEECTHHH--HTTCSEEEECSC
T ss_pred -----------CCCEEEEEECCce-EEEEEEEEEEEECCEE--------EcCeEEEEEEEcccccc--cccCceEEEcCc
Confidence 3478999999998 5999999999998754 67899999998732221 246799999999
Q ss_pred CCCh-------HHHHhhhcCCCCceeEEeecCCCCC--cceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEccE
Q 011139 229 GDLS-------VISQLASRGITPRVFSHCLKGQGNG--GGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQ 295 (492)
Q Consensus 229 ~~~s-------~~~~l~~~g~i~~~FS~~l~~~~~~--~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~g~ 295 (492)
+..+ ++++|++||+|+++||+||++..+. .|+|+|||+|+ +++.|+|+. .+.+|.|++++|.|+++
T Consensus 129 ~~~s~~~~~~~~~~~l~~qg~i~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~w~v~l~~i~v~~~ 207 (330)
T 1yg9_A 129 PGCPNALKGKTVLENFVEENLIAPVFSIHHARFQDGEHFGEIIFGGSDWKYVDGEFTYVPLV-GDDSWKFRLDGVKIGDT 207 (330)
T ss_dssp TTSCCTTSCCCHHHHHHHTTSSCSEEEEEEEECTTSCEEEEEEETSCCGGGEEEEEEEEEBS-CTTSCCEECSEEEETTE
T ss_pred chhccccCCCCHHHHHHhcCCCCceEEEEEcCCCCCCCCCEEEECCcCHHHccCceEEEECC-CCCEEEEEeCeEEECCE
Confidence 8765 8999999998888999999986333 89999999995 689999998 67899999999999998
Q ss_pred EeecCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceE-EecCCCcccCCeEEEEecCC
Q 011139 296 LLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCY-LVSNSVSEIFPQVSLNFEGG 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y-~v~c~~~~~~p~i~f~f~gg 374 (492)
.+. ..+..+||||||+++++|++++++|.+++++.... .+...| .++|+....+|+|+|+| +|
T Consensus 208 ~~~--------~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~~-------~g~~~~~~~~C~~~~~~p~i~f~f-gg 271 (330)
T 1yg9_A 208 TVA--------PAGTQAIIDTSKAIIVGPKAYVNPINEAIGCVVEK-------TTTRRICKLDCSKIPSLPDVTFVI-NG 271 (330)
T ss_dssp EEE--------CTTCEEEECTTCSSEEEEHHHHHHHHHHHTCEEEE-------CSSCEEEEECGGGGGGSCCEEEEE-TT
T ss_pred EEc--------CCCcEEEEecCCccccCCHHHHHHHHHHhCCcccC-------CCceEEEEEECCCccccCcEEEEE-CC
Confidence 763 24578999999999999999999999999665311 111268 89999777899999999 89
Q ss_pred cEEEecCCceEEEeeeeCCceEEEEEEEecC-CCceeeCceeeecEEEEEECCCCEEEEEeCC
Q 011139 375 ASMVLKPEEYLIHLGFYDGAAMWCIGFEKSP-GGVSILGDLVLKDKIFVYDLARQRVGWANYD 436 (492)
Q Consensus 375 ~~~~l~p~~yi~~~~~~~~~~~c~l~i~~~~-~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~ 436 (492)
++++||+++|+++. ...|.++|+... .+.||||++|||++|+|||++++|||||+++
T Consensus 272 ~~~~l~~~~y~~~~-----~~~C~~~i~~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfA~~~ 329 (330)
T 1yg9_A 272 RNFNISSQYYIQQN-----GNLCYSGFQPCGHSDHFFIGDFFVDHYYSEFNWENKTMGFGRSV 329 (330)
T ss_dssp EEEEECHHHHEEEE-----TTEEEESEEEETTCSSEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEEEECHHHhcccC-----CCcEEEEEEeCCCCCeEEecHHHhhheEEEEECCCCEEEEEECC
Confidence 99999999999974 456888998754 5689999999999999999999999999975
No 24
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=100.00 E-value=2.6e-56 Score=458.12 Aligned_cols=298 Identities=22% Similarity=0.365 Sum_probs=253.8
Q ss_pred ccceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCC--CCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCCC
Q 011139 74 FLIGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCS--NCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTT 151 (492)
Q Consensus 74 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~--~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~ 151 (492)
+.++.|+++|+||||||++.|++||||+++||+|..|. .|..+ +.|||++|+|++..
T Consensus 135 ~~~~~Y~~~I~IGTP~Q~~~vi~DTGSs~lWV~~~~C~~~~C~~~-------~~ydps~SsT~~~~-------------- 193 (453)
T 2bju_A 135 FQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTK-------HLYDSSKSRTYEKD-------------- 193 (453)
T ss_dssp ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSTTGGGS-------CCBCGGGCTTCEEE--------------
T ss_pred cCCCEEEEEEEECCCCeEEEEEEECCCcceEEeccCCCccccCCC-------CcCCCccCCceeEC--------------
Confidence 45689999999999999999999999999999999996 57655 89999999999743
Q ss_pred CCCCCCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeecc--CCCCCCCCCcceeeecCCC
Q 011139 152 ATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQT--GDLSKTDKAIDGIFGFGQG 229 (492)
Q Consensus 152 ~~~c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~--~~~~~~~~~~~GIlGLg~~ 229 (492)
+|.|.++|++|+ +.|.+++|+|++++.. +. +.|||+...+ +.+. .....+||||||++
T Consensus 194 ---------~~~~~i~YgdGs-~~G~~~~Dtv~ig~~~--------v~-~~Fg~a~~~~~~g~~f-~~~~~dGIlGLg~~ 253 (453)
T 2bju_A 194 ---------GTKVEMNYVSGT-VSGFFSKDLVTVGNLS--------LP-YKFIEVIDTNGFEPTY-TASTFDGILGLGWK 253 (453)
T ss_dssp ---------EEEEEEECSSSE-EEEEEEEEEEEETTEE--------EE-EEEEEEEECGGGTTHH-HHSSCCEEEECSCG
T ss_pred ---------CcEEEEEcCCCC-eEEEEEEEEEEEeCcE--------EE-EEEEEEEEecccCccc-cccCCceeEeccCC
Confidence 579999999999 8999999999998754 66 9999999876 4311 12467999999997
Q ss_pred CC------hHHHHhhhcCCCC-ceeEEeecCCCCCcceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEccEEee
Q 011139 230 DL------SVISQLASRGITP-RVFSHCLKGQGNGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQLLS 298 (492)
Q Consensus 230 ~~------s~~~~l~~~g~i~-~~FS~~l~~~~~~~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~g~~~~ 298 (492)
.. +++++|++||+|+ ++||+||++.+..+|+|+|||+|+ +++.|+|+. ...+|.|.++ |.|++ .+
T Consensus 254 ~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~D~~~y~G~l~~~pv~-~~~~w~V~l~-I~Vgg-~~- 329 (453)
T 2bju_A 254 DLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEERFYEGPLTYEKLN-HDLYWQITLD-AHVGN-IM- 329 (453)
T ss_dssp GGSTTCCCCHHHHHHHTTSSSSCEEEEECCBTTTBCEEEEESSCCGGGEEEEEEEEEEE-EETTEEEEEE-EEETT-EE-
T ss_pred cccccCCCcHHHHHHHCCCCCCCEEEEEeCCCCCCCeEEEECCCCHHHcCCceEEEecC-CCceEEEEEE-EEECc-EE-
Confidence 54 4889999999996 899999998655689999999994 689999997 5689999999 99999 33
Q ss_pred cCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCc-eEEecCCCcccCCeEEEEecCCcEE
Q 011139 299 IDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQ-CYLVSNSVSEIFPQVSLNFEGGASM 377 (492)
Q Consensus 299 ~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~-~y~v~c~~~~~~p~i~f~f~gg~~~ 377 (492)
. .+..+||||||+++++|++++++|.+++++.. ...+ .|.++|.. ..+|+|+|+| +|+++
T Consensus 330 ~--------~~~~aIiDSGTsl~~lP~~~~~~l~~~i~~~~---------~~~g~~~~v~C~~-~~~P~itf~f-gg~~~ 390 (453)
T 2bju_A 330 L--------EKANCIVDSGTSAITVPTDFLNKMLQNLDVIK---------VPFLPFYVTLCNN-SKLPTFEFTS-ENGKY 390 (453)
T ss_dssp E--------EEEEEEECTTCCSEEECHHHHHHHTTTSSCEE---------CTTSSCEEEETTC-TTCCCEEEEC-SSCEE
T ss_pred e--------ccccEEEcCCCCeEecCHHHHHHHHHHhCCcc---------cCCCceEEEecCC-CCCCcEEEEE-CCEEE
Confidence 1 24579999999999999999999998876531 1234 79999987 7899999999 78999
Q ss_pred EecCCceEEEeeeeCCceEEEEEEEecC--CCceeeCceeeecEEEEEECCCCEEEEEeCC
Q 011139 378 VLKPEEYLIHLGFYDGAAMWCIGFEKSP--GGVSILGDLVLKDKIFVYDLARQRVGWANYD 436 (492)
Q Consensus 378 ~l~p~~yi~~~~~~~~~~~c~l~i~~~~--~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~ 436 (492)
+|||++|+++... ++...|.++|++.+ .+.||||++|||++|+|||++++|||||+++
T Consensus 391 ~l~~~~yi~~~~~-~g~~~C~~~~~~~~~~~~~~ILGd~Flr~~yvVFD~~n~rIGfA~~~ 450 (453)
T 2bju_A 391 TLEPEYYLQHIED-VGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIALAK 450 (453)
T ss_dssp EECHHHHEEECTT-TSTTEEEECEEECCCSSCEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred EECHHHhEeeccc-CCCceEEEEEEeCCCCCCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence 9999999997531 14457888999876 4589999999999999999999999999986
No 25
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=100.00 E-value=1.1e-54 Score=450.76 Aligned_cols=318 Identities=24% Similarity=0.340 Sum_probs=252.2
Q ss_pred ceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCCCCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCCCCCCC
Q 011139 76 IGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQC 155 (492)
Q Consensus 76 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~c 155 (492)
+..|+++|+||||+|+|.|+|||||+++||+|..| |..+ +.|+|++|+||+..
T Consensus 73 ~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWV~~~~c--c~~~-------~~y~~~~SsT~~~~------------------ 125 (455)
T 3lpj_A 73 GQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH--PFLH-------RYYQRQLSSTYRDL------------------ 125 (455)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC--TTCS-------CCCCGGGCTTCEEE------------------
T ss_pred CCEEEEEEEECCCCeEEEEEEcCCCcceEEecccc--cccC-------CcccCCCCCCcccC------------------
Confidence 35899999999999999999999999999999887 6544 89999999999754
Q ss_pred CCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCC----
Q 011139 156 PSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDL---- 231 (492)
Q Consensus 156 ~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~---- 231 (492)
+|.|.++|++|+ +.|.+++|+|+|++... ....+.|+++....+.|. .....+||||||++..
T Consensus 126 -----~~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~~~------~~~~~~~~~~~~~~~~~~-~~~~~dGIlGLg~~~~s~~~ 192 (455)
T 3lpj_A 126 -----RKGVYVPYTQGK-WEGELGTDLVSIPHGPN------VTVRANIAAITESDKFFI-NGSNWEGILGLAYAEIARPD 192 (455)
T ss_dssp -----EEEEEEECSSCE-EEEEEEEEEEECTTSCS------CEEEEEEEEEEEEESCSC-TTCCCCEEEECSCGGGCSSC
T ss_pred -----CccEEEEeCCeE-EEEEEEEEEEEECCCcc------eeeEEEEEEEEccCcccc-cCCCcceEEEeCcccccccc
Confidence 479999999999 59999999999984210 122467888887766542 2357799999998643
Q ss_pred ----hHHHHhhhcCCCCceeEEeecCC----------CCCcceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEc
Q 011139 232 ----SVISQLASRGITPRVFSHCLKGQ----------GNGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVN 293 (492)
Q Consensus 232 ----s~~~~l~~~g~i~~~FS~~l~~~----------~~~~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~ 293 (492)
+++++|++|++|+++||+||.+. ...+|+|+|||+|+ +++.|+|+. ...+|.|.+++|.|+
T Consensus 193 ~~~~~~~~~L~~q~~i~~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~w~v~l~~i~v~ 271 (455)
T 3lpj_A 193 DSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIR-REWYYEVIIVRVEIN 271 (455)
T ss_dssp TTSCCHHHHHHHHSCCCSCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECC-SBTTBBCCEEEEEET
T ss_pred CCCCcHHHHHHHccCCCceeEEEeccccccccccccccCCCceEEECCcCcccccCceEEEecC-CCceeEEEEeEEEEC
Confidence 58999999999988999999753 24579999999995 689999998 468999999999999
Q ss_pred cEEeecCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcc-----cCCeEE
Q 011139 294 GQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSE-----IFPQVS 368 (492)
Q Consensus 294 g~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~-----~~p~i~ 368 (492)
++.+.++...+ ....+||||||++++||++++++|.+++.+....... ......-|.++|.... .+|+|+
T Consensus 272 g~~~~~~~~~~---~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~~~~~--~~~~~~g~~~~C~~~~~~~~~~~P~i~ 346 (455)
T 3lpj_A 272 GQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKF--PDGFWLGEQLVCWQAGTTPWNIFPVIS 346 (455)
T ss_dssp TEECCCCGGGG---GSSCEEECTTSSSEEEEHHHHHHHHHHHHHHTTTSCC--CHHHHTTCSCEEESTTCCCGGGSCCEE
T ss_pred CEEcccccccc---CCCeEEEECCCcceeCCHHHHHHHHHHhhhhcccccc--CcccccCcceecccccCCchhcCCcEE
Confidence 99987655433 2467999999999999999999999999998542100 0000011245665443 489999
Q ss_pred EEecCCc-----EEEecCCceEEEeeeeCC-ceEEE-EEEEecCCCceeeCceeeecEEEEEECCCCEEEEEeCCCCCC
Q 011139 369 LNFEGGA-----SMVLKPEEYLIHLGFYDG-AAMWC-IGFEKSPGGVSILGDLVLKDKIFVYDLARQRVGWANYDCSLS 440 (492)
Q Consensus 369 f~f~gg~-----~~~l~p~~yi~~~~~~~~-~~~c~-l~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~c~~~ 440 (492)
|+|.|+. +|+|+|++|+.+....++ ...|. +++... .+.||||++|||++|+|||++++|||||+++|+..
T Consensus 347 f~f~g~~~~~~~~~~l~~~~yi~~~~~~~~~~~~C~~f~~~~~-~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~~~ 424 (455)
T 3lpj_A 347 LYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQS-STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVH 424 (455)
T ss_dssp EEEECSSTTEEEEEEECHHHHEEEECCTTCCSCEEEEECEEEE-SSCEEECHHHHTTEEEEEETTTTEEEEEEETTCCC
T ss_pred EEEcCCCcCceEEEEECHHHheEeccCCCCCCceEEEEeccCC-CCcEEEChHHhCCeEEEEECCCCEEEEEecccccc
Confidence 9995543 599999999998643222 23566 355544 57899999999999999999999999999999753
No 26
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-54 Score=440.91 Aligned_cols=325 Identities=26% Similarity=0.382 Sum_probs=254.6
Q ss_pred ceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCCCCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCCCCCCC
Q 011139 76 IGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQC 155 (492)
Q Consensus 76 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~c 155 (492)
+..|+++|+||||+|+|.|+|||||+++||+|..|..| ++.|||++|+||+..
T Consensus 12 ~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~~---------~~~f~~~~SsT~~~~------------------ 64 (383)
T 2ewy_A 12 GRGYYLEMLIGTPPQKLQILVDTGSSNFAVAGTPHSYI---------DTYFDTERSSTYRSK------------------ 64 (383)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCBTTB---------SCCCCGGGCTTCEEE------------------
T ss_pred CCcEEEEEEecCCCceEEEEEecCCCceEEecCCCCcc---------ccCcccccCccceeC------------------
Confidence 35899999999999999999999999999999888655 268999999999754
Q ss_pred CCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCC----
Q 011139 156 PSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDL---- 231 (492)
Q Consensus 156 ~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~---- 231 (492)
+|.|.++|++|+ +.|.+++|+|+|++... ....+.|++.....+.|. .....+||||||++..
T Consensus 65 -----~~~~~i~Yg~Gs-~~G~~~~Dtv~i~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~dGilGLg~~~~s~~~ 131 (383)
T 2ewy_A 65 -----GFDVTVKYTQGS-WTGFVGEDLVTIPKGFN------TSFLVNIATIFESENFFL-PGIKWNGILGLAYATLAKPS 131 (383)
T ss_dssp -----EEEEEEECSSCE-EEEEEEEEEEEETTTEE------EEEEEEEEEEEEEESCSC-TTCCCCEEEECSCGGGCSSC
T ss_pred -----CceEEEEECCcE-EEEEEEEEEEEECCCcc------ceeEEEEEEEEeecceee-ccCcCceEEecCchhccccc
Confidence 478999999998 69999999999985220 012467888776555432 2346799999999754
Q ss_pred ----hHHHHhhhcCCCCceeEEeecC-------CCCCcceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEccEE
Q 011139 232 ----SVISQLASRGITPRVFSHCLKG-------QGNGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQL 296 (492)
Q Consensus 232 ----s~~~~l~~~g~i~~~FS~~l~~-------~~~~~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~g~~ 296 (492)
+++++|++|+.++++||+||.+ ....+|+|+|||+|+ +++.|+|+. ...+|.|.+++|+|+++.
T Consensus 132 ~~~~~~~~~l~~q~~i~~~FS~~l~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~~~v~l~~i~v~g~~ 210 (383)
T 2ewy_A 132 SSLETFFDSLVTQANIPNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGDIWYTPIK-EEWYYQIEILKLEIGGQS 210 (383)
T ss_dssp TTSCCHHHHHHHHHTCCSCEEEEECCC---------CCEEEEETSCCGGGCCSCEEEEECS-SBTTBBCCEEEEEETTEE
T ss_pred ccccCHHHHHHHccCCCcceEEEeeccccccccCCCCCeEEEeCccchhhccCccEEEecC-CCceEEEEEEEEEECCEE
Confidence 4788999999888899999964 234589999999983 789999998 468999999999999998
Q ss_pred eecCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCC-ceEEecCCCc-----ccCCeEEEE
Q 011139 297 LSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGK-QCYLVSNSVS-----EIFPQVSLN 370 (492)
Q Consensus 297 ~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~-~~y~v~c~~~-----~~~p~i~f~ 370 (492)
+.++...+ ....+||||||++++||++++++|++++.+....... .... ..|.++|... ..+|+|+|+
T Consensus 211 ~~~~~~~~---~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~---~~~~~~~~~~~C~~~~~~~~~~~P~i~f~ 284 (383)
T 2ewy_A 211 LNLDCREY---NADKAIVDSGTTLLRLPQKVFDAVVEAVARASLIPEF---SDGFWTGSQLACWTNSETPWSYFPKISIY 284 (383)
T ss_dssp CCCCTTTT---TSSCEEECTTCSSEEEEHHHHHHHHHHHHHTTCSSCC---CHHHHHTSEEEEECSSSCGGGGSCCEEEE
T ss_pred cccccccc---CCccEEEEcCCccccCCHHHHHHHHHHHhhhcccccC---ccccccccccccccCCcccHhhCCcEEEE
Confidence 87654433 2467999999999999999999999999987532100 0000 1135666533 468999999
Q ss_pred ecCC-----cEEEecCCceEEEeeeeCCceEEE-EEEEecCCCceeeCceeeecEEEEEECCCCEEEEEeCCCCC--Ccc
Q 011139 371 FEGG-----ASMVLKPEEYLIHLGFYDGAAMWC-IGFEKSPGGVSILGDLVLKDKIFVYDLARQRVGWANYDCSL--SVN 442 (492)
Q Consensus 371 f~gg-----~~~~l~p~~yi~~~~~~~~~~~c~-l~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~c~~--~~~ 442 (492)
|.|+ .+++|+|++|+.+....++...|. +++.+. .+.||||++|||++|+|||++++|||||+++|.. +.+
T Consensus 285 f~g~~~~~~~~~~l~~~~yi~~~~~~~~~~~C~~~~i~~~-~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~~~~~~~ 363 (383)
T 2ewy_A 285 LRDENSSRSFRITILPQLYIQPMMGAGLNYECYRFGISPS-TNALVIGATVMEGFYVIFDRAQKRVGFAASPCAEIAGAA 363 (383)
T ss_dssp EECSSTTEEEEEEECHHHHEEEECCCTTCSEEEEESEEEE-SSCEEECHHHHTTEEEEEETTTTEEEEEECTTCBSSSCB
T ss_pred ECCCCCCceEEEEEChHHheeecccCCCCceeEEEEecCC-CCcEEEChHHhCCeeEEEECCCCeEEEEeccCCCcCCcc
Confidence 9654 379999999998753222344566 467665 4679999999999999999999999999999973 667
Q ss_pred eeeccC
Q 011139 443 VSITSG 448 (492)
Q Consensus 443 ~~~~~~ 448 (492)
++.+++
T Consensus 364 i~~i~g 369 (383)
T 2ewy_A 364 VSEISG 369 (383)
T ss_dssp CEEEEE
T ss_pred eeeecC
Confidence 776654
No 27
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=100.00 E-value=2.7e-54 Score=437.96 Aligned_cols=327 Identities=20% Similarity=0.400 Sum_probs=256.6
Q ss_pred ccceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCCCCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCCCCC
Q 011139 74 FLIGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTAT 153 (492)
Q Consensus 74 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~ 153 (492)
+.+++|+++|+|||| |+|||||+++||+|..| .+++.+.|+++.|.....+...
T Consensus 11 ~~~~~Y~~~i~iGtP-----v~~DTGSs~lWv~c~~~---------------------~~~~~~~C~s~~C~~~~~~~~~ 64 (381)
T 1t6e_X 11 PATSLYTIPFHDGAS-----LVLDVAGPLVWSTCDGG---------------------QPPAEIPCSSPTCLLANAYPAP 64 (381)
T ss_dssp TTTCCEEEEEETTEE-----EEEETTCCCEEECCCTT---------------------CCCCCCBTTSHHHHHHHSSCCT
T ss_pred CCCcEEEEEEeCCCE-----EEEECCCCceEEeCCCC---------------------CCCCccCCCCchhccccCCCCC
Confidence 456899999999998 99999999999998653 1356678888888765444444
Q ss_pred CCCCC-------CCCC-eeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeee
Q 011139 154 QCPSG-------SNQC-SYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFG 225 (492)
Q Consensus 154 ~c~~~-------~~~~-~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlG 225 (492)
.|+.. +..| .|.++|++|+.+.|++++|+|+|++..+...+.++..++.|||+..+..... ....|||||
T Consensus 65 sc~~~~~~~~~~~~~c~~f~i~YgdGs~~~G~l~~Dtv~ig~~~g~~~v~~~~~~~~Fg~~~~~~~~~~--~~~~dGIlG 142 (381)
T 1t6e_X 65 GCPAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPSKLLASL--PRGSTGVAG 142 (381)
T ss_dssp TCCCCCC------CBCEECCBCTTTCCBCCEEEEEEEEEEEEESSSSEEEEEEEEEEEEECCGGGGTTS--CTTEEEEEE
T ss_pred CCCCccCCcCcCCCccccccccccCCceeeEEEEEEEEEeeccCCCccccceeeeeEeecCcccccCCC--CCCCceEEE
Confidence 66542 2456 5999999999779999999999986543323333333457899987632211 257899999
Q ss_pred cCCCCChHHHHhhhcCCCCceeEEeecCCCCCcceEEECCCCC------CCeEEeeCCCC--CCcceEEEeEEEEccEEe
Q 011139 226 FGQGDLSVISQLASRGITPRVFSHCLKGQGNGGGILVLGEILE------PSIVYSPLVPS--KPHYNLNLHGITVNGQLL 297 (492)
Q Consensus 226 Lg~~~~s~~~~l~~~g~i~~~FS~~l~~~~~~~G~l~fGg~d~------~~l~~~p~~~~--~~~~~v~l~~i~v~g~~~ 297 (492)
||++..+++.||+++++++++||+||++. .+|+|+|||+|. +++.|+|++.+ .++|.|+|++|+|+++.+
T Consensus 143 Lg~~~~s~~~ql~~~~~~~~~FS~~L~~~--~~G~l~fGg~~~~~~~~~g~l~~tPl~~~~~~~~y~v~l~~i~vg~~~~ 220 (381)
T 1t6e_X 143 LANSGLALPAQVASAQKVANRFLLCLPTG--GPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRV 220 (381)
T ss_dssp CSSSTTSHHHHHHHHHTCCSEEEEECCSS--SCEEEEESCCSCSCHHHHTTCCEEECBCCTTCCSCEECEEEEEETTEEC
T ss_pred eCCCcchhHHHHhhhcccCceEEEEeCCC--CCeeEEeCCcccccccccCcceeeccccCCCCcceEEEEEEEEEcCEEe
Confidence 99999999999999997789999999875 689999999874 68999999854 357889999999999998
Q ss_pred ecCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhcc-------CCC--CCCCCCCceEEecCCCc----ccC
Q 011139 298 SIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQ-------SVT--PTMSKGKQCYLVSNSVS----EIF 364 (492)
Q Consensus 298 ~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~-------~~~--~~~~~~~~~y~v~c~~~----~~~ 364 (492)
.++...+. ..++||||||++++||+++|++|.+++.+++.. ..+ ........||.++|... ..+
T Consensus 221 ~~~~~~~~---~~~~iiDTGTtl~~lp~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~ 297 (381)
T 1t6e_X 221 PVPEGALA---TGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAV 297 (381)
T ss_dssp CCCTTCSC---TTCEEECSSCSSEEECHHHHHHHHHHHHHHHHHC-------CCEECCCTTCSCEEEGGGCCEETTEECC
T ss_pred cCCHHHcc---CCCEEEECCCccEEeCHHHHHHHHHHHHHhhcccccccccccccCCCCCCCCccCCCCCCcccccCCcC
Confidence 76554442 467999999999999999999999999887641 111 11123367998876431 378
Q ss_pred CeEEEEecCCcEEEecCCceEEEeeeeCCceEEEEEEEecCC--------CceeeCceeeecEEEEEECCCCEEEEEeCC
Q 011139 365 PQVSLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFEKSPG--------GVSILGDLVLKDKIFVYDLARQRVGWANYD 436 (492)
Q Consensus 365 p~i~f~f~gg~~~~l~p~~yi~~~~~~~~~~~c~l~i~~~~~--------~~~iLG~~fl~~~y~vfD~~~~~igfa~~~ 436 (492)
|+|+|+|+||++++|++++|+++.. .+.+|++|+..+. +.||||+.|||++|+|||++++|||||+++
T Consensus 298 P~i~f~f~gg~~~~l~~~~y~~~~~----~~~~Cl~~~~~~~~~~~~~~~~~~ILGd~fl~~~yvvfD~~~~riGfA~~~ 373 (381)
T 1t6e_X 298 PNVQLGLDGGSDWTMTGKNSMVDVK----QGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSRLP 373 (381)
T ss_dssp CCEEEEETTSCEEEECHHHHEEEEE----TTEEEESEEECCCCC------CSEEECHHHHTTEEEEEETTTTEEEEEECC
T ss_pred CeEEEEECCCcEEEeCCCeEEEEcC----CCeEEEEEEcCCCcccccCCCceEEEChHHhCCcEEEEECCCCEEEEeccc
Confidence 9999999667999999999999742 2456789987653 579999999999999999999999999986
Q ss_pred C
Q 011139 437 C 437 (492)
Q Consensus 437 c 437 (492)
.
T Consensus 374 ~ 374 (381)
T 1t6e_X 374 H 374 (381)
T ss_dssp T
T ss_pred C
Confidence 5
No 28
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=100.00 E-value=4.6e-54 Score=438.72 Aligned_cols=325 Identities=24% Similarity=0.354 Sum_probs=254.4
Q ss_pred ceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCCCCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCCCCCCC
Q 011139 76 IGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQC 155 (492)
Q Consensus 76 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~c 155 (492)
+..|+++|+||||+|+|.|+|||||+++||+|..|..| ++.|||++|+|++..
T Consensus 20 ~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~c~~~---------~~~y~~~~SsT~~~~------------------ 72 (395)
T 2qp8_A 20 GQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFL---------HRYYQRQLSSTYRDL------------------ 72 (395)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTTC---------SCCCCGGGCTTCEEE------------------
T ss_pred CceEEEEEEecCCCceEEEEEecCCCceEEECCCCccc---------cCCcCcccCCCceeC------------------
Confidence 46899999999999999999999999999999887544 378999999999754
Q ss_pred CCCCCCCeeeeeeCCCCeeEEEEEEEEEEecc-ccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCC---
Q 011139 156 PSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDA-ILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDL--- 231 (492)
Q Consensus 156 ~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~-~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~--- 231 (492)
.|.|.++|++|+ +.|.+++|+|+|++ ... ...+.|++.....+.|. .....+||||||++..
T Consensus 73 -----~~~~~i~Yg~Gs-~~G~~~~Dtv~ig~g~~~-------~~~~~~~~~~~~~~~f~-~~~~~dGIlGLg~~~~s~~ 138 (395)
T 2qp8_A 73 -----RKGVYVPYTQGK-WEGELGTDLVSIPHGPNV-------TVRANIAAITESDKFFI-NGSNWEGILGLAYAEIARP 138 (395)
T ss_dssp -----EEEEEEECSSCE-EEEEEEEEEEECTTSCSC-------EEEEEEEEEEEEESCSC-TTCCCCEEEECSCGGGCSS
T ss_pred -----CceEEEEECCcE-EEEEEEeEEEEECCCCCc-------eEEEEEEEEEccCcccc-cccCccceEEcCchhhccC
Confidence 478999999999 59999999999973 220 12366787776555432 2346799999999653
Q ss_pred -----hHHHHhhhcCCCCceeEEeecCC----------CCCcceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEE
Q 011139 232 -----SVISQLASRGITPRVFSHCLKGQ----------GNGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITV 292 (492)
Q Consensus 232 -----s~~~~l~~~g~i~~~FS~~l~~~----------~~~~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v 292 (492)
+++++|++|++++++||+||.+. ...+|+|+|||+|+ +++.|+|+. ...+|.|.+++|+|
T Consensus 139 ~~~~~~~~~~l~~q~~i~~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~~~v~l~~i~v 217 (395)
T 2qp8_A 139 DDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIR-REWYYEVIIVRVEI 217 (395)
T ss_dssp CTTSCCHHHHHHHHSCCCSCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECC-SBTTBBCCEEEEEE
T ss_pred CCCCCCHHHHHHHccCCcceEEEEeccccccccccccccCCCcEEEECCcCcccccCceEEeccC-CCceEEEEEEEEEE
Confidence 48899999999988999999753 13579999999994 689999998 46899999999999
Q ss_pred ccEEeecCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCc-----ccCCeE
Q 011139 293 NGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVS-----EIFPQV 367 (492)
Q Consensus 293 ~g~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~-----~~~p~i 367 (492)
+++.+.++...+ ....+||||||++++||++++++|.+++.+........ ......|.++|... ..+|+|
T Consensus 218 ~g~~~~~~~~~~---~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~--~~~~~~~~~~C~~~~~~~~~~~P~i 292 (395)
T 2qp8_A 218 NGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--DGFWLGEQLVCWQAGTTPWNIFPVI 292 (395)
T ss_dssp TTEECCCCGGGG---GSSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTTSCCC--HHHHTTCSCEEESTTCCCGGGSCCE
T ss_pred CCEEcccCcccc---CCceEEEEcCCCcEecCHHHHHHHHHHHhhhcccccCC--ccccccccccccccccchHhhCCcE
Confidence 999987655443 24679999999999999999999999999875321100 00000123455433 368999
Q ss_pred EEEecCCc-----EEEecCCceEEEeeeeC-CceEEE-EEEEecCCCceeeCceeeecEEEEEECCCCEEEEEeCCCCC-
Q 011139 368 SLNFEGGA-----SMVLKPEEYLIHLGFYD-GAAMWC-IGFEKSPGGVSILGDLVLKDKIFVYDLARQRVGWANYDCSL- 439 (492)
Q Consensus 368 ~f~f~gg~-----~~~l~p~~yi~~~~~~~-~~~~c~-l~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~c~~- 439 (492)
+|+|.|+. +++|+|++|+.+....+ +...|. ++++.. ...||||++|||++|+|||++++|||||+++|+.
T Consensus 293 ~f~f~g~~~~~~~~~~l~p~~yi~~~~~~~~~~~~C~~~~i~~~-~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~~~ 371 (395)
T 2qp8_A 293 SLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQS-STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVH 371 (395)
T ss_dssp EEEEECSSTTEEEEEEECHHHHEEEECCTTCCSCEEEEECEEEE-SSCEEECHHHHTTEEEEEETTTTEEEEEEETTCCC
T ss_pred EEEEccCCCCceEEEEECHHHhEeecccCCCCCceEEEEEecCC-CCcEEEChHHhCCeeEEEECCCCEEEEEeccCCCC
Confidence 99996543 79999999998754211 234675 688765 4679999999999999999999999999999984
Q ss_pred -CcceeeccC
Q 011139 440 -SVNVSITSG 448 (492)
Q Consensus 440 -~~~~~~~~~ 448 (492)
+.+++.+++
T Consensus 372 ~~~~i~~i~g 381 (395)
T 2qp8_A 372 DEFRTAAVEG 381 (395)
T ss_dssp CSSCCCEEEE
T ss_pred CCCccceecC
Confidence 566665544
No 29
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=100.00 E-value=2e-54 Score=429.82 Aligned_cols=299 Identities=24% Similarity=0.378 Sum_probs=247.9
Q ss_pred ceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCCCCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCCCCCCC
Q 011139 76 IGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQC 155 (492)
Q Consensus 76 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~c 155 (492)
++.|+++|+|| +|+|.|++||||+++||+|..|..|... .++.|+|++|+ ++
T Consensus 13 ~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~c~-----~~~~y~~~~Ss-~~-------------------- 64 (325)
T 1ibq_A 13 DEEYLTPVTVG--KSTLHLDFDTGSADLWVFSDELPSSEQT-----GHDLYTPSSSA-TK-------------------- 64 (325)
T ss_dssp TSCEEEEEEEB--TEEEEEEEETTCCCEEEECTTSCHHHHT-----TSCCCBCCSSC-EE--------------------
T ss_pred CCEEEEEEEEC--CEEEEEEEeCCCccceEeeCCCCccccC-----CCCCCCchhcC-Cc--------------------
Confidence 57999999999 8999999999999999999999875322 23899999998 53
Q ss_pred CCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCCh---
Q 011139 156 PSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDLS--- 232 (492)
Q Consensus 156 ~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s--- 232 (492)
...|.|.++|++|+.+.|.+++|+|+|++.. +.++.|||+...++.+. .....+||||||++..+
T Consensus 65 ---~~~~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~--------v~~~~fg~~~~~~~~~~-~~~~~~GilGLg~~~~s~~~ 132 (325)
T 1ibq_A 65 ---LSGYSWDISYGDGSSASGDVYRDTVTVGGVT--------TNKQAVEAASKISSEFV-QDTANDGLLGLAFSSINTVQ 132 (325)
T ss_dssp ---CTTCBEEEECSSSCEEEEEEEEEEEEETTEE--------EEEEEEEEEEEECHHHH-TSTTCCEEEECSCGGGCCCB
T ss_pred ---cCCCEEEEEeCCCCEEEEEEEEeEEEECCEE--------EcceEEEEEEecCcccc-ccCCCceEEEeCcccccccC
Confidence 2468999999999988999999999998754 67899999998765432 12467999999997543
Q ss_pred ------HHHHhhhcCCCCceeEEeecCCCCCcceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEccEEeecCcc
Q 011139 233 ------VISQLASRGITPRVFSHCLKGQGNGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPS 302 (492)
Q Consensus 233 ------~~~~l~~~g~i~~~FS~~l~~~~~~~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~g~~~~~~~~ 302 (492)
++++|+++ +.+++||+||+++ ..|+|+|||+|+ +++.|+|+.+...+|.|++++|+|+++.+.
T Consensus 133 p~~~~~~~~~l~~~-i~~~~FS~~l~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~w~v~l~~i~v~~~~~~---- 205 (325)
T 1ibq_A 133 PKAQTTFFDTVKSQ-LDSPLFAVQLKHD--APGVYDFGYIDDSKYTGSITYTDADSSQGYWGFSTDGYSIGDGSSS---- 205 (325)
T ss_dssp SSCCCCHHHHHGGG-SSSSEEEEEEETT--EEEEEEESSCCGGGBSSCCEEEECBCTTSSCEEEECEEEETTSCCB----
T ss_pred cCCCCCHHHHHHHh-cCCcEEEEEecCC--CCceEEECCcChhhccCceEEEEcCCCCceEEEEECcEEECCeecc----
Confidence 78999987 4358999999863 589999999994 789999998667899999999999987552
Q ss_pred cccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEEEecCCcEEEecCC
Q 011139 303 AFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVLKPE 382 (492)
Q Consensus 303 ~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg~~~~l~p~ 382 (492)
.....+||||||+++++|++++++|.+++.+.. .....+.|.++|. ..+|+|+|+| +|++++||++
T Consensus 206 ----~~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~a~-------~~~~~g~~~~~C~--~~~P~i~f~f-gg~~~~i~~~ 271 (325)
T 1ibq_A 206 ----SSGFSAIADTGTTLILLDDEIVSAYYEQVSGAQ-------ESYEAGGYVFSCS--TDLPDFTVVI-GDYKAVVPGK 271 (325)
T ss_dssp ----SCCEEEEECTTCCSEEECHHHHHHHHTTSTTCB-------CCSSSSSCEEETT--CCCCCEEEEE-TTEEEEECHH
T ss_pred ----CCCceEEEeCCCCcEeCCHHHHHHHHHhCCCce-------EcCcCCeEEEEcC--CCCCcEEEEE-CCEEEEECHH
Confidence 235679999999999999999999999884332 1223345889998 5789999999 8899999999
Q ss_pred ceEEEeeeeCCceEEEEEEEecC-CCceeeCceeeecEEEEEECCCCEEEEEeCC
Q 011139 383 EYLIHLGFYDGAAMWCIGFEKSP-GGVSILGDLVLKDKIFVYDLARQRVGWANYD 436 (492)
Q Consensus 383 ~yi~~~~~~~~~~~c~l~i~~~~-~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~ 436 (492)
+|+++... .+...|.++|+..+ .+.||||++|||++|+|||++++|||||+++
T Consensus 272 ~~~~~~~~-~~~~~C~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 325 (325)
T 1ibq_A 272 YINYAPVS-TGSSTCYGGIQSNSGLGLSILGDVFLKSQYVVFNSEGPKLGFAAQA 325 (325)
T ss_dssp HHEEEESS-TTCSEEEESEEECTTTCSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred HhcccccC-CCCCeEEEEEEcCCCCCceEEChHHhcCEEEEEECCCCEEEeeeCC
Confidence 99986421 23467878898765 5689999999999999999999999999863
No 30
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=100.00 E-value=1.1e-53 Score=437.06 Aligned_cols=324 Identities=23% Similarity=0.337 Sum_probs=251.5
Q ss_pred eeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCCCCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCCCCCCCC
Q 011139 77 GLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQCP 156 (492)
Q Consensus 77 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~c~ 156 (492)
..|+++|+||||+|+|.|+|||||+++||+|..| |..+ +.|+|++|+|++..
T Consensus 28 ~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c--~~~~-------~~y~~~~SsT~~~~------------------- 79 (402)
T 3vf3_A 28 QGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH--PFLH-------RYYQRQLSSTYRDL------------------- 79 (402)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC--TTCS-------CCCCGGGCTTCEEE-------------------
T ss_pred CEEEEEEEECCCCeEEEEEEeCCCCceEEccCCC--Cccc-------CCcCcccCcccccC-------------------
Confidence 5899999999999999999999999999999887 5444 89999999999754
Q ss_pred CCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCC------
Q 011139 157 SGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGD------ 230 (492)
Q Consensus 157 ~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~------ 230 (492)
+|.|.++|++|+ +.|.+++|+|+|++... ....+.|++.....+.+. .....+||||||++.
T Consensus 80 ----~~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~~------~~~~~~~~~~~~~~~~~~-~~~~~dGIlGLg~~~~s~~~~ 147 (402)
T 3vf3_A 80 ----RKGVYVPYTQGK-WEGELGTDLVSIPHGPN------VTVRANIAAITESDKFFI-NGSNWEGILGLAYAEIARPDD 147 (402)
T ss_dssp ----EEEEEEECSSCE-EEEEEEEEEEECTTSCS------CEEEEEEEEEEEEESCSC-TTCCCCEEEECSCGGGCSSCT
T ss_pred ----CCEEEEEECcEE-EEEEEEEEEEEECCccc------cceeeeEEEEEccccccc-cCCCccceEEcCchhhcccCC
Confidence 479999999999 69999999999984210 012355788777665442 235679999999864
Q ss_pred --ChHHHHhhhcCCCCceeEEeecCC----------CCCcceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEcc
Q 011139 231 --LSVISQLASRGITPRVFSHCLKGQ----------GNGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNG 294 (492)
Q Consensus 231 --~s~~~~l~~~g~i~~~FS~~l~~~----------~~~~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~g 294 (492)
.+++++|++|++|+++||+||.+. ....|+|+|||+|+ +++.|+|+. ...+|.|.+++|.|++
T Consensus 148 ~~~~~~~~L~~q~~i~~~FS~~l~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~w~v~l~~i~v~g 226 (402)
T 3vf3_A 148 SLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIR-REWYYEVIIVRVEING 226 (402)
T ss_dssp TSCCHHHHHHHHSCCCSCEEEEECCCC-------------EEEEESSCCGGGEEEEEEEEECS-SBTTBEECEEEEEETT
T ss_pred cCCcHHHHHHHccCCccceEEEeecccccccccccccCCCCEEEeCCcCcccccCceEEEeCC-cCcEEEEEEeEEEECC
Confidence 358999999999988999999742 34579999999995 689999998 4689999999999999
Q ss_pred EEeecCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCc-----ccCCeEEE
Q 011139 295 QLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVS-----EIFPQVSL 369 (492)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~-----~~~p~i~f 369 (492)
+.+.++...+ ....+||||||++++||++++++|.+++.+....... ......-|.++|... ..+|+|+|
T Consensus 227 ~~~~~~~~~~---~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~C~~~~~~~~~~~P~i~f 301 (402)
T 3vf3_A 227 QDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKF--PDGFWLGEQLVCWQAGTTPWNIFPVISL 301 (402)
T ss_dssp EECCCCGGGG---GSSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTTSCC--CTTGGGTCSCEEEETTCCCGGGSCCEEE
T ss_pred EEeccccccc---CCCeEEEECCCCcccCCHHHHHHHHHHHhhhcccccc--CccccccccccccccccchHhhCCceEE
Confidence 9987654433 2467999999999999999999999999998532100 000001124555533 37999999
Q ss_pred EecCCc-----EEEecCCceEEEeeeeCCc-eEEE-EEEEecCCCceeeCceeeecEEEEEECCCCEEEEEeCCCCC--C
Q 011139 370 NFEGGA-----SMVLKPEEYLIHLGFYDGA-AMWC-IGFEKSPGGVSILGDLVLKDKIFVYDLARQRVGWANYDCSL--S 440 (492)
Q Consensus 370 ~f~gg~-----~~~l~p~~yi~~~~~~~~~-~~c~-l~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~c~~--~ 440 (492)
+|.|+. +++|+|++|+.+....++. ..|. +++... .+.||||++|||++|+|||++++|||||+++|+. +
T Consensus 302 ~f~g~~~~~~~~~~l~~~~yi~~~~~~~~~~~~C~~~~~~~~-~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~~~~~ 380 (402)
T 3vf3_A 302 YLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQS-STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDE 380 (402)
T ss_dssp EEECSSTTEEEEEEECHHHHEEECCCGGGTTEEEEEECEEEE-SSCEEECHHHHTTEEEEEEGGGTEEEEEEETTCCBCS
T ss_pred EEecCCCCceEEEEECHHHheehhccCCCCCceEEEEeccCC-CCcEEEChHHhCCeEEEEECCCCEEEEEecccCcccC
Confidence 995543 5999999999985432112 3576 466554 5689999999999999999999999999999995 4
Q ss_pred cceeecc
Q 011139 441 VNVSITS 447 (492)
Q Consensus 441 ~~~~~~~ 447 (492)
.+++.++
T Consensus 381 ~~i~~i~ 387 (402)
T 3vf3_A 381 FRTAAVE 387 (402)
T ss_dssp SCBCEEE
T ss_pred ccccccc
Confidence 4444443
No 31
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=100.00 E-value=1.8e-54 Score=433.07 Aligned_cols=292 Identities=24% Similarity=0.384 Sum_probs=245.4
Q ss_pred ceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCCCCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCCCCCCC
Q 011139 76 IGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQC 155 (492)
Q Consensus 76 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~c 155 (492)
+..|+++|+||||+|++.|+|||||+++||+|. +.|+|++|+++
T Consensus 11 ~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~---------------~~y~~s~Ss~~--------------------- 54 (340)
T 1wkr_A 11 LVDYVVNVGVGSPATTYSLLVDTGSSNTWLGAD---------------KSYVKTSTSSA--------------------- 54 (340)
T ss_dssp SSCEEEEEEETTTTEEEEEEEETTCCCCEECSS---------------SCCCCCTTCEE---------------------
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCChhheecCC---------------CccCCcCCccc---------------------
Confidence 358999999999999999999999999999863 57999888765
Q ss_pred CCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCC----
Q 011139 156 PSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDL---- 231 (492)
Q Consensus 156 ~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~---- 231 (492)
.+|.|.++|++|+ +.|.+++|+|+|++.. +.++.|||+....+ | ...+||||||++..
T Consensus 55 ----~~~~~~i~Yg~Gs-~~G~~~~Dtv~~g~~~--------v~~~~fg~~~~~~~-~----~~~~GilGLg~~~~s~~~ 116 (340)
T 1wkr_A 55 ----TSDKVSVTYGSGS-FSGTEYTDTVTLGSLT--------IPKQSIGVASRDSG-F----DGVDGILGVGPVDLTVGT 116 (340)
T ss_dssp ----EEEEEEEECSSCE-EEEEEEEEEEEETTEE--------EEEEEEEEEEEEES-C----TTCSEEEECSCGGGGTTS
T ss_pred ----cCceEEEEECCcE-EEEEEEEEEEEECCEE--------EcceEEEEEEccCC-C----cCCCcEEECCcccccccc
Confidence 3579999999998 8999999999998754 67899999998765 2 25799999998654
Q ss_pred ----------hHHHHhhhcCCCC-ceeEEeecCC---CCCcceEEECCCCC----CCeEEeeCCCC---CCcceEEEeEE
Q 011139 232 ----------SVISQLASRGITP-RVFSHCLKGQ---GNGGGILVLGEILE----PSIVYSPLVPS---KPHYNLNLHGI 290 (492)
Q Consensus 232 ----------s~~~~l~~~g~i~-~~FS~~l~~~---~~~~G~l~fGg~d~----~~l~~~p~~~~---~~~~~v~l~~i 290 (492)
+++++|++||+|+ ++||+||.+. ....|+|+|||+|+ +++.|+|+... ..+|.|. .+|
T Consensus 117 ~~~~~~~~~~~~~~~l~~~g~i~~~~FS~~l~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~~w~v~-~~i 195 (340)
T 1wkr_A 117 LSPHTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGELTFGATDSSKYTGSITYTPITSTSPASAYWGIN-QSI 195 (340)
T ss_dssp EESCTTCCCCCHHHHHHHTTSSSSSEEEEECCCCSSSSEEEEEEEESSCCGGGCSSCCEEEECCSSTTGGGSSEEE-EEE
T ss_pred ccccccccCCCHHHHHHHcCCCCCCEEEEEecCCCCCCCCCcEEEEcccChhhcccceEEEECccCCCCcceEEEE-eeE
Confidence 4689999999996 8999999864 23579999999994 78999999864 5689999 999
Q ss_pred EEcc-EEeecCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEE
Q 011139 291 TVNG-QLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSL 369 (492)
Q Consensus 291 ~v~g-~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f 369 (492)
.|++ +.+.. +..+||||||++++||++++++|.+++++.. +...++|.++|.....+|+|+|
T Consensus 196 ~v~~~~~l~~---------~~~aiiDSGTt~~~lP~~~~~~l~~~~~a~~--------~~~~g~~~~~C~~~~~~p~i~f 258 (340)
T 1wkr_A 196 RYGSSTSILS---------STAGIVDTGTTLTLIASDAFAKYKKATGAVA--------DNNTGLLRLTTAQYANLQSLFF 258 (340)
T ss_dssp EETTTEEEEE---------EEEEEECTTBCSEEECHHHHHHHHHHHTCEE--------CTTTSSEEECHHHHHTCCCEEE
T ss_pred EECCCeEccC---------CCeEEEeCCcccccCCHHHHHHHHHhhCCEE--------cCCCCeEEeeccccccCCcEEE
Confidence 9998 77631 2479999999999999999999988887653 2345679999987778999999
Q ss_pred EecCCcEEEecCCceEEEeeee---C-CceEEEEEEEecC-----CCceeeCceeeecEEEEEECCCCEEEEEeCCCCCC
Q 011139 370 NFEGGASMVLKPEEYLIHLGFY---D-GAAMWCIGFEKSP-----GGVSILGDLVLKDKIFVYDLARQRVGWANYDCSLS 440 (492)
Q Consensus 370 ~f~gg~~~~l~p~~yi~~~~~~---~-~~~~c~l~i~~~~-----~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~c~~~ 440 (492)
+| +|.+++|+|++|+++.... + ....||++|.+.+ ...||||++|||++|+|||++++|||||+++|..+
T Consensus 259 ~f-~g~~~~i~~~~yi~~~~~~~~~g~~~~~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~~~ 337 (340)
T 1wkr_A 259 TI-GGQTFELTANAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYSVYDTTNKRLGLATTSFTTA 337 (340)
T ss_dssp EE-TTEEEEECTGGGBCCGGGGGGGTCCSSCEEBCEEECSSCTTSSCCEEECHHHHTSEEEEEETTTTEEEEEECTTTTC
T ss_pred EE-CCEEEEEcHHHhccccccccccCCCCceEEEEEecCCCCCCCCcceEeChHhhhheEEEEeCCCCeEEEEecCCCCC
Confidence 99 7899999999999864321 1 1356888887632 24699999999999999999999999999999853
No 32
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=100.00 E-value=2.8e-54 Score=428.13 Aligned_cols=296 Identities=23% Similarity=0.396 Sum_probs=246.1
Q ss_pred ceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCCCCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCCCCCCC
Q 011139 76 IGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQC 155 (492)
Q Consensus 76 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~c 155 (492)
++.|+++|+|| +|+|.|+|||||+++||+|..|..|... .++.|+|++|+ ++
T Consensus 14 ~~~Y~~~i~iG--~q~~~v~~DTGSs~lWv~~~~C~~~~c~-----~~~~y~~~~Ss-~~-------------------- 65 (323)
T 1izd_A 14 DEEYITQVTVG--DDTLGLDFDTGSADLWVFSSQTPSSERS-----GHDYYTPGSSA-QK-------------------- 65 (323)
T ss_dssp GCCEEEEEEET--TEEEEEEEETTCCCEEECBTTSCHHHHT-----TCCCBCCCTTC-EE--------------------
T ss_pred CCEEEEEEEEC--CEEEEEEEcCCCcceEEecCCCCccccc-----CCCCCCccccC-Cc--------------------
Confidence 57999999999 8999999999999999999999875322 13899999998 53
Q ss_pred CCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCC----
Q 011139 156 PSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDL---- 231 (492)
Q Consensus 156 ~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~---- 231 (492)
.++|.|.++|++|+.+.|.+++|+|+|++.. +.++.|||++.+++.+. .....+||||||++..
T Consensus 66 ---~~~~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~--------v~~~~fg~~~~~~~~~~-~~~~~~GilGLg~~~~s~~~ 133 (323)
T 1izd_A 66 ---IDGATWSISYGDGSSASGDVYKDKVTVGGVS--------YDSQAVESAEKVSSEFT-QDTANDGLLGLAFSSINTVQ 133 (323)
T ss_dssp ---EEEEEEEEECTTSCEEEEEEEEEEEEETTEE--------EEEEEEEEEEEECHHHH-HCTTCCEEEECSCGGGCCCB
T ss_pred ---cCCCeEEEEcCCCCeEEEEEEEEEEEECCEE--------ECceEEEEEEecccccc-ccCCCceEEecCcccccccC
Confidence 2358999999999988999999999998754 67899999998765432 1246799999999754
Q ss_pred -----hHHHHhhhcCCCCceeEEeecCCCCCcceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEccEEeecCcc
Q 011139 232 -----SVISQLASRGITPRVFSHCLKGQGNGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPS 302 (492)
Q Consensus 232 -----s~~~~l~~~g~i~~~FS~~l~~~~~~~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~g~~~~~~~~ 302 (492)
+++++|+++ +.+++||+||+++ ..|+|+|||+|+ +++.|+|+.+...+|.|++++|+|++ .+.
T Consensus 134 p~~~~~~~~~l~~~-i~~~~FS~~L~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~w~v~l~~i~v~~-~~~---- 205 (323)
T 1izd_A 134 PTPQKTFFDNVKSS-LSEPIFAVALKHN--APGVYDFGYTDSSKYTGSITYTDVDNSQGFWGFTADGYSIGS-DSS---- 205 (323)
T ss_dssp SSCCCCHHHHHGGG-SSSSEEEEECCTT--SCEEEEESSCCTTSEEEEEEEEECBCTTSSCEEEESEEEETT-EEE----
T ss_pred CCCCCCHHHHHHHh-ccCcEEEEEccCC--CCCEEEECCcCccccccceEEEECCCCCceEEEEECeEEECC-ccc----
Confidence 378999987 4458999999863 579999999995 57999999866789999999999999 442
Q ss_pred cccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEEEecCCcEEEecCC
Q 011139 303 AFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVLKPE 382 (492)
Q Consensus 303 ~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg~~~~l~p~ 382 (492)
.....+||||||+++++|++++++|.+++.+.. .+...+.|.++|. ..+|+|+|+| ||++++||++
T Consensus 206 ----~~~~~aiiDSGTs~~~lp~~~~~~i~~~i~ga~-------~~~~~g~~~~~C~--~~~P~i~f~f-gg~~~~i~~~ 271 (323)
T 1izd_A 206 ----SDSITGIADTGTTLLLLDDSIVDAYYEQVNGAS-------YDSSQGGYVFPSS--ASLPDFSVTI-GDYTATVPGE 271 (323)
T ss_dssp ----CCCEEEEECTTCCSEEECHHHHHHHHTTSTTCE-------EETTTTEEEEETT--CCCCCEEEEE-TTEEEEECHH
T ss_pred ----CCCceEEEeCCCcceeCCHHHHHHHHHhCCCcE-------EcCcCCEEEEECC--CCCceEEEEE-CCEEEecCHH
Confidence 245679999999999999999999998885332 1223456899998 5789999999 8999999999
Q ss_pred ceEEEeeeeCCceEEEEEEEecC-CCceeeCceeeecEEEEEECCCCEEEEEeCC
Q 011139 383 EYLIHLGFYDGAAMWCIGFEKSP-GGVSILGDLVLKDKIFVYDLARQRVGWANYD 436 (492)
Q Consensus 383 ~yi~~~~~~~~~~~c~l~i~~~~-~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~ 436 (492)
+|+++.. +...|.++|+..+ .+.||||++|||++|+|||++++|||||++.
T Consensus 272 ~~~~~~~---~~~~C~~~i~~~~~~~~~IlG~~fl~~~y~vfD~~~~riGfA~~a 323 (323)
T 1izd_A 272 YISFADV---GNGQTFGGIQSNSGIGFSIFGDVFLKSQYVVFDASGPRLGFAAQA 323 (323)
T ss_dssp HHEEEEC---STTEEEESEEECTTTSSEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred HeEEecC---CCCeEEEEEEcCCCCCcEEEChHHhcCEEEEEECCCCEEEEeeCC
Confidence 9998742 3556777898865 5689999999999999999999999999863
No 33
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=100.00 E-value=2.9e-54 Score=428.23 Aligned_cols=296 Identities=22% Similarity=0.361 Sum_probs=246.2
Q ss_pred ceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCCCCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCCCCCCC
Q 011139 76 IGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCSNCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQTTATQC 155 (492)
Q Consensus 76 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~~~~~c 155 (492)
++.|+++|+|| +|+|.|+|||||+++||+|..|..|... .++.|||++|+ ++
T Consensus 14 ~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~c~-----~~~~y~~~~Ss-~~-------------------- 65 (323)
T 1bxo_A 14 DEEYITPVTIG--GTTLNLNFDTGSADLWVFSTELPASQQS-----GHSVYNPSATG-KE-------------------- 65 (323)
T ss_dssp GSCEEEEEEET--TEEEEEEEETTCCCEEECBTTSCHHHHT-----TSCCBCHHHHC-EE--------------------
T ss_pred CCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCCchhcc-----CCCCCCcccCC-cc--------------------
Confidence 57999999999 8999999999999999999999875322 23899999998 53
Q ss_pred CCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCCC----
Q 011139 156 PSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDL---- 231 (492)
Q Consensus 156 ~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~---- 231 (492)
..+|.|+++|++|+.+.|.+++|+|+|++.. +.++.|||++.+++.+. .....+||||||++..
T Consensus 66 ---~~~~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~--------v~~~~fg~~~~~~~~~~-~~~~~~GilGLg~~~~s~~~ 133 (323)
T 1bxo_A 66 ---LSGYTWSISYGDGSSASGNVFTDSVTVGGVT--------AHGQAVQAAQQISAQFQ-QDTNNDGLLGLAFSSINTVQ 133 (323)
T ss_dssp ---EEEEEEEEECTTSCEEEEEEEEEEEEETTEE--------EEEEEEEEEEEECHHHH-TCTTCSEEEECSCGGGCCCB
T ss_pred ---cCCCeEEEEeCCCCeEEEEEEEEEEEECCEE--------ECcEEEEEEEecCcccc-cCCCCceEEEeCcccccccc
Confidence 2458999999999988999999999998754 67899999998765432 1246799999999643
Q ss_pred -----hHHHHhhhcCCCCceeEEeecCCCCCcceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEccEEeecCcc
Q 011139 232 -----SVISQLASRGITPRVFSHCLKGQGNGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPS 302 (492)
Q Consensus 232 -----s~~~~l~~~g~i~~~FS~~l~~~~~~~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~g~~~~~~~~ 302 (492)
+++++|+++ +.+++||+||++. ..|+|+|||+|+ +++.|+|+.+.+.+|.|++++|+|++ ..
T Consensus 134 ~~~~~~~~~~l~~~-i~~~~FS~~L~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~w~v~l~~i~v~~-~~----- 204 (323)
T 1bxo_A 134 PQSQTTFFDTVKSS-LAQPLFAVALKHQ--QPGVYDFGFIDSSKYTGSLTYTGVDNSQGFWSFNVDSYTAGS-QS----- 204 (323)
T ss_dssp SSCCCCHHHHHGGG-BSSSEEEEECCSS--SCEEEEESSCCGGGBSSCCEEEECBCTTSSCEEEEEEEEETT-EE-----
T ss_pred cCCCCCHHHHHHHh-cCCcEEEEEEeCC--CCceEEEeCcChhhccCceEEEECCCCCCeEEEEEeeEEECC-cc-----
Confidence 478999987 4458999999863 579999999993 78999999866789999999999998 21
Q ss_pred cccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCCCCCCCCCceEEecCCCcccCCeEEEEecCCcEEEecCC
Q 011139 303 AFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVTPTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVLKPE 382 (492)
Q Consensus 303 ~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg~~~~l~p~ 382 (492)
.....+||||||+++++|++++++|.+++.+... +...+.|.++|. ..+|+|+|+| ||++++||++
T Consensus 205 ----~~~~~aiiDSGTs~~~lP~~~~~~l~~~i~~a~~-------~~~~g~~~~~C~--~~~P~i~f~f-gg~~~~l~~~ 270 (323)
T 1bxo_A 205 ----GDGFSGIADTGTTLLLLDDSVVSQYYSQVSGAQQ-------DSNAGGYVFDCS--TNLPDFSVSI-SGYTATVPGS 270 (323)
T ss_dssp ----EEEEEEEECTTCSSEEECHHHHHHHHTTSTTCEE-------ETTTTEEEECTT--CCCCCEEEEE-TTEEEEECHH
T ss_pred ----CCCceEEEeCCCCceeCCHHHHHHHHHhCCCceE-------cCcCCEEEEECC--CCCceEEEEE-CCEEEEECHH
Confidence 1345799999999999999999999998843321 223456889998 5789999999 8899999999
Q ss_pred ceEEEeeeeCCceEEEEEEEecC-CCceeeCceeeecEEEEEECCCCEEEEEeCC
Q 011139 383 EYLIHLGFYDGAAMWCIGFEKSP-GGVSILGDLVLKDKIFVYDLARQRVGWANYD 436 (492)
Q Consensus 383 ~yi~~~~~~~~~~~c~l~i~~~~-~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~ 436 (492)
+|+++.. ++...|.++|+..+ .+.||||++|||++|+|||++++|||||++.
T Consensus 271 ~~~~~~~--~~~~~C~~~i~~~~~~~~~ILG~~fl~~~y~vfD~~~~riGfA~~a 323 (323)
T 1bxo_A 271 LINYGPS--GDGSTCLGGIQSNSGIGFSIFGDIFLKSQYVVFDSDGPQLGFAPQA 323 (323)
T ss_dssp HHEEEEC--SSSSCEEESEEECTTCSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred HeEEecc--CCCCeEEEEEECCCCCCcEEEChHHHcCEEEEEECCCCEEEEecCC
Confidence 9998742 23457888898865 5689999999999999999999999999863
No 34
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=100.00 E-value=6e-42 Score=324.71 Aligned_cols=217 Identities=25% Similarity=0.414 Sum_probs=185.2
Q ss_pred ccceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCC---CCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccCC
Q 011139 74 FLIGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCS---NCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQT 150 (492)
Q Consensus 74 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~---~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~~ 150 (492)
+.++.|+++|+||||+|+|.|+|||||+++||+|..|. .|..+ +.|+|++|+|++..
T Consensus 10 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~-------~~y~~~~SsT~~~~------------- 69 (239)
T 1b5f_A 10 DRDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAH-------SMYESSDSSTYKEN------------- 69 (239)
T ss_dssp ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSCHHHHTS-------CCBCGGGCTTCEEE-------------
T ss_pred cCCCEEEEEEEECCCCeEEEEEEeCCCcceEEEcCCCCCCcccCCC-------CCCCCccCCCeeeC-------------
Confidence 45689999999999999999999999999999999996 47765 79999999999743
Q ss_pred CCCCCCCCCCCCeeeeeeCCCCeeEEEEEEEEEEeccccCCcccccccccEEEeeeeeccCCCCCCCCCcceeeecCCCC
Q 011139 151 TATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDAILGESLIANSTALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGD 230 (492)
Q Consensus 151 ~~~~c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~ 230 (492)
++.|.+.|++|+ +.|.+++|+|+|++.. +.++.|||+..+.+.. +.....+||||||++.
T Consensus 70 ----------~~~~~i~Yg~Gs-~~G~~~~D~v~~g~~~--------v~~~~fg~~~~~~~~~-f~~~~~~GilGLg~~~ 129 (239)
T 1b5f_A 70 ----------GTFGAIIYGTGS-ITGFFSQDSVTIGDLV--------VKEQDFIEATDEADNV-FLHRLFDGILGLSFQT 129 (239)
T ss_dssp ----------EEEEEEECSSCE-EEEEEEEEEEEETTEE--------EEEEEEEEEEEECHHH-HTTCSCCEEEECSCCS
T ss_pred ----------CcEEEEEECCCc-EEEEEEEEEEEECCcE--------EccEEEEEEEeccCcc-ccccCcceEEecCccc
Confidence 468999999998 7999999999998654 6789999998765421 1234679999999998
Q ss_pred Ch--HHHHhhhcCCCC-ceeEEeecCC--CCCcceEEECCCCC----CCeEEeeCCCCCCcceEEEeEEEEccEEeecCc
Q 011139 231 LS--VISQLASRGITP-RVFSHCLKGQ--GNGGGILVLGEILE----PSIVYSPLVPSKPHYNLNLHGITVNGQLLSIDP 301 (492)
Q Consensus 231 ~s--~~~~l~~~g~i~-~~FS~~l~~~--~~~~G~l~fGg~d~----~~l~~~p~~~~~~~~~v~l~~i~v~g~~~~~~~ 301 (492)
.+ ++.+|++||+|+ ++||+||++. ....|+|+|||+|+ +++.|+|+. ...+|.|.+++|.|+++.+.+.
T Consensus 130 ~s~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~~~v~l~~i~v~~~~~~~~- 207 (239)
T 1b5f_A 130 ISVPVWYNMLNQGLVKERRFSFWLNRNVDEEEGGELVFGGLDPNHFRGDHTYVPVT-YQYYWQFGIGDVLIGDKSTGFC- 207 (239)
T ss_dssp SSCCHHHHHHHTTCCSSSEEEEEECCSCSSSCCEEEEETSCCGGGEEEEEEEEEEE-EETTEEEEECCEEETTEECCTT-
T ss_pred cccHHHHHHHHCCCCCCCEEEEEEeCCCCCCCCeEEEECCcChhhccCceEEEEcc-cCCeEEEEeeEEEECCEEeccc-
Confidence 76 778899999986 8999999874 24579999999995 579999997 5679999999999999887542
Q ss_pred ccccccCCCcEEEecccccccccHHHHHHHHHHHHH
Q 011139 302 SAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITA 337 (492)
Q Consensus 302 ~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~ 337 (492)
.....+||||||++++||++++++|.+++++
T Consensus 208 -----~~~~~aiiDTGTt~~~lP~~~~~~i~~~iga 238 (239)
T 1b5f_A 208 -----APGCQAFADSGTSLLSGPTAIVTQINHAIGA 238 (239)
T ss_dssp -----TTCEEEEECTTCSSEEECHHHHHHHHHHTTC
T ss_pred -----CCCCEEEEecCcchhhCCHHHHHHHHHHhCC
Confidence 2346799999999999999999999998764
No 35
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=100.00 E-value=6.7e-39 Score=304.67 Aligned_cols=219 Identities=27% Similarity=0.413 Sum_probs=183.2
Q ss_pred cccEEEeeeeeccCCCCCCCCCcceeeecCCCCC------hHHHHhhhcCCCC-ceeEEeecCCCCC--cceEEECCCCC
Q 011139 198 TALIVFGCSTYQTGDLSKTDKAIDGIFGFGQGDL------SVISQLASRGITP-RVFSHCLKGQGNG--GGILVLGEILE 268 (492)
Q Consensus 198 ~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~------s~~~~l~~~g~i~-~~FS~~l~~~~~~--~G~l~fGg~d~ 268 (492)
+.++.|||++.+++.+ +.....+||||||++.. +++++|++||+|+ ++||+||++.... +|+|+|||+|+
T Consensus 5 v~~~~Fg~~~~~~~~~-f~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~ 83 (241)
T 1lya_B 5 VERQVFGEATKQPGIT-FIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQPGGELMLGGTDS 83 (241)
T ss_dssp EEEEEEEEEEECCSST-TTSCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEECSSTTCSSCEEEEETSCCG
T ss_pred ECCeEEEEEEEccCCc-cccccCCEEEECCcchhhccCCChHHHHHHHCCCCCCCEEEEEEeCCCCCCCCcEEEECCcCH
Confidence 5689999999987642 23457899999999754 3889999999986 8999999986444 89999999995
Q ss_pred ----CCeEEeeCCCCCCcceEEEeEEEEccEEeecCcccccccCCCcEEEecccccccccHHHHHHHHHHHHHHhccCCC
Q 011139 269 ----PSIVYSPLVPSKPHYNLNLHGITVNGQLLSIDPSAFAASNNRETIVDSGTTLTYLVEEAFDPFVSAITATVSQSVT 344 (492)
Q Consensus 269 ----~~l~~~p~~~~~~~~~v~l~~i~v~g~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~i~~~~~~~~~ 344 (492)
+++.|+|+. ...+|.|++++|+|+++.+. ......+|+||||+++++|++++++|.+++++...
T Consensus 84 ~~~~g~l~~~p~~-~~~~~~v~l~~i~v~~~~~~-------~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~---- 151 (241)
T 1lya_B 84 KYYKGSLSYLNVT-RKAYWQVHLDQVEVASGLTL-------CKEGCEAIVDTGTSLMVGPVDEVRELQKAIGAVPL---- 151 (241)
T ss_dssp GGEEEEEEEEECS-SBTTBEEEEEEEEETTSCEE-------STTCEEEEECTTCSSEEECHHHHHHHHHHHTCEEE----
T ss_pred HHcCCceEEEECc-cccEEEEEEeEEEECCeeEe-------ccCCCEEEEECCCccccCCHHHHHHHHHHhCCeec----
Confidence 689999998 57899999999999987642 12456799999999999999999999999866431
Q ss_pred CCCCCCCceEEecCCCcccCCeEEEEecCCcEEEecCCceEEEeeeeCCceEEEEEEEecC-----CCceeeCceeeecE
Q 011139 345 PTMSKGKQCYLVSNSVSEIFPQVSLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFEKSP-----GGVSILGDLVLKDK 419 (492)
Q Consensus 345 ~~~~~~~~~y~v~c~~~~~~p~i~f~f~gg~~~~l~p~~yi~~~~~~~~~~~c~l~i~~~~-----~~~~iLG~~fl~~~ 419 (492)
..+.|.++|.....+|+|+|+| +|++++|+|++|+++... .+...|.++|++.+ .+.||||++|||++
T Consensus 152 -----~~g~~~~~C~~~~~~p~i~f~f-~g~~~~l~~~~y~~~~~~-~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~ 224 (241)
T 1lya_B 152 -----IQGEYMIPCEKVSTLPAITLKL-GGKGYKLSPEDYTLKVSQ-AGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRY 224 (241)
T ss_dssp -----ETTEEEEEGGGGGGSCCEEEEE-TTEEEEECTTTSEEEETT-TTSSEEEESEEECCCCTTTCCCEEECHHHHTTE
T ss_pred -----cCCcEEEECCCCccCCeEEEEE-CCEEEEECHHHhEEEccC-CCCCeeEEEEEecccCCCCCCeEEechHHhcce
Confidence 1356899999878899999999 789999999999998532 23457878898753 46899999999999
Q ss_pred EEEEECCCCEEEEEeCC
Q 011139 420 IFVYDLARQRVGWANYD 436 (492)
Q Consensus 420 y~vfD~~~~~igfa~~~ 436 (492)
|+|||++++|||||+++
T Consensus 225 y~vfD~~~~~igfA~~~ 241 (241)
T 1lya_B 225 YTVFDRDNNRVGFAEAA 241 (241)
T ss_dssp EEEEETTTTEEEEEEEC
T ss_pred EEEEECCCCEEEEEEcC
Confidence 99999999999999874
No 36
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=99.86 E-value=2.7e-22 Score=160.88 Aligned_cols=83 Identities=33% Similarity=0.602 Sum_probs=75.1
Q ss_pred ccceeEEEEEEeCCCCcEEEEEEecCCCeeEEeCCCCC----CCCCCCCCCcCCCCccCCCCCcCceecCCCccccCccC
Q 011139 74 FLIGLYFTKVKLGSPPKEFNVQIDTGSDILWVTCSSCS----NCPQNSGLGIQLNFFDTSSSSTARIVSCSDPLCASEIQ 149 (492)
Q Consensus 74 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~----~C~~~~~~~~~~~~y~~~~SsT~~~v~C~~~~C~~~~~ 149 (492)
+.++.|+++|.||||+|+|.|+|||||+++||+|..|. .|..+ +.|||++|+|++..
T Consensus 10 ~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~C~~~-------~~y~p~~SsT~~~~------------ 70 (97)
T 1lya_A 10 YMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIH-------HKYNSDKSSTYVKN------------ 70 (97)
T ss_dssp ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCTTCHHHHTS-------CCBCGGGCTTCEEE------------
T ss_pred CCCCeEEEEEEECCCCeEEEEEEeCCCCceEEeEcCccCcccccCCC-------CCCCchhCCCceeC------------
Confidence 44689999999999999999999999999999999997 57765 89999999999754
Q ss_pred CCCCCCCCCCCCCeeeeeeCCCCeeEEEEEEEEEEecc
Q 011139 150 TTATQCPSGSNQCSYSFEYGDGSGTSGSYIYDTLYFDA 187 (492)
Q Consensus 150 ~~~~~c~~~~~~~~~~i~Y~~g~~~~G~~~~D~v~i~~ 187 (492)
+|.|.+.|++|+ +.|.+++|+|+|++
T Consensus 71 -----------~~~~~i~Yg~Gs-~~G~~~~Dtv~i~g 96 (97)
T 1lya_A 71 -----------GTSFDIHYGSGS-LSGYLSQDTVSVPC 96 (97)
T ss_dssp -----------EEEEEEECSSCE-EEEEEEEEEEEESC
T ss_pred -----------CCcEEEEECCcE-EEEEEEEEEEEECC
Confidence 479999999999 89999999999974
No 37
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=99.75 E-value=1.1e-18 Score=137.57 Aligned_cols=82 Identities=29% Similarity=0.477 Sum_probs=70.5
Q ss_pred eEEecCCCcccCCeEEEEecCCcEEEecCCceEEEeeeeCCceEEEEEEEecC----CCceeeCceeeecEEEEEECCCC
Q 011139 353 CYLVSNSVSEIFPQVSLNFEGGASMVLKPEEYLIHLGFYDGAAMWCIGFEKSP----GGVSILGDLVLKDKIFVYDLARQ 428 (492)
Q Consensus 353 ~y~v~c~~~~~~p~i~f~f~gg~~~~l~p~~yi~~~~~~~~~~~c~l~i~~~~----~~~~iLG~~fl~~~y~vfD~~~~ 428 (492)
-|.++|+....+|+|+|+| +|++++|+|++|+++... .+...|.++|+..+ .+.||||++|||++|+|||++++
T Consensus 2 ~y~v~C~~~~~~P~i~f~~-gg~~~~l~~~~yi~~~~~-~~~~~C~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~ 79 (87)
T 1b5f_B 2 ELQVDCNTLSSMPNVSFTI-GGKKFGLTPEQYILKVGK-GEATQCISGFTAMDATLLGPLWILGDVFMRPYHTVFDYGNL 79 (87)
T ss_dssp CCEECGGGGGGCCCEEEEE-TTEEEEECHHHHEEEESC-TTTCEEEESEEECCCBSSSBEEEECHHHHTTEEEEEETTTT
T ss_pred cEEEECCCCCcCCcEEEEE-CCEEEEECHHHhEEEccC-CCCCEEEEEEEECCCCCCCCeEEechHHhccEEEEEECCCC
Confidence 3889999878899999999 789999999999997532 23457888998753 45799999999999999999999
Q ss_pred EEEEEeCC
Q 011139 429 RVGWANYD 436 (492)
Q Consensus 429 ~igfa~~~ 436 (492)
|||||+++
T Consensus 80 riGfA~~~ 87 (87)
T 1b5f_B 80 LVGFAEAA 87 (87)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEcC
Confidence 99999874
No 38
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=90.84 E-value=0.24 Score=41.88 Aligned_cols=37 Identities=14% Similarity=0.064 Sum_probs=29.1
Q ss_pred EEEEecCCCceeeCceeeecEEEEEECCCCEEEEEeC
Q 011139 399 IGFEKSPGGVSILGDLVLKDKIFVYDLARQRVGWANY 435 (492)
Q Consensus 399 l~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfa~~ 435 (492)
+.+.+...-..|||..||+.+-.+.|++++++-|.+.
T Consensus 99 ~~Vle~~~~d~LLGmD~L~~~~~~ID~~~~~L~l~~~ 135 (148)
T 3s8i_A 99 FSILEDQPMDMLLGLDMLRRHQCSIDLKKNVLVIGTT 135 (148)
T ss_dssp EEEETTCSSSEEECHHHHHHTTCEEETTTTEEECTTT
T ss_pred EEEeCCCCcCeeccHHHHHhCCEEEEcCCCEEEEccC
Confidence 3444333345899999999999999999999998653
No 39
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=90.15 E-value=0.52 Score=39.65 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=24.8
Q ss_pred CceeeCceeeecEEEEEECCCCEEEEE
Q 011139 407 GVSILGDLVLKDKIFVYDLARQRVGWA 433 (492)
Q Consensus 407 ~~~iLG~~fl~~~y~vfD~~~~~igfa 433 (492)
...|||..||+++-++.|+.+++|-|.
T Consensus 108 ~d~iLG~d~L~~~~~~ID~~~~~l~l~ 134 (148)
T 2i1a_A 108 IDVLIGLDMLKRHLACVDLKENVLRIA 134 (148)
T ss_dssp CSEEECHHHHHHTTCEEETTTTEEEET
T ss_pred CCeEecHHHHhhCCEEEECCCCEEEEc
Confidence 358999999999999999999999995
No 40
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=83.65 E-value=1.5 Score=34.12 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=24.0
Q ss_pred EEEEEeCCCCcEEEEEEecCCCeeEEeCC
Q 011139 80 FTKVKLGSPPKEFNVQIDTGSDILWVTCS 108 (492)
Q Consensus 80 ~~~i~iGtP~q~~~v~~DTGSs~~wv~~~ 108 (492)
++.+.||. |.+.+++|||.+++-+...
T Consensus 10 ~vtvkI~G--q~~eaLLDTGAD~TVl~~~ 36 (99)
T 2hs1_A 10 LVTIKIGG--QLKEALLDTGADDTIIEEM 36 (99)
T ss_dssp EEEEEETT--EEEEEEECTTCSSEEESCC
T ss_pred EEEEEECC--EEEEEEeccCCCcEEEecc
Confidence 46799998 9999999999999999754
No 41
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=82.14 E-value=1.3 Score=34.80 Aligned_cols=26 Identities=35% Similarity=0.402 Sum_probs=23.5
Q ss_pred EEEEEeCCCCcEEEEEEecCCCeeEEeC
Q 011139 80 FTKVKLGSPPKEFNVQIDTGSDILWVTC 107 (492)
Q Consensus 80 ~~~i~iGtP~q~~~v~~DTGSs~~wv~~ 107 (492)
++.|.||. |.+.+++|||.+++-+..
T Consensus 10 ~v~v~I~G--q~~e~LLDTGAD~TVl~~ 35 (104)
T 1fmb_A 10 TTIVLIND--TPLNVLLDTGADTSVLTT 35 (104)
T ss_dssp EEEEEETT--EEEEEEECTTCSSCEEEH
T ss_pred EEEEEECC--EEEEEEeccCCCcEEEcc
Confidence 57899998 999999999999999973
No 42
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=79.09 E-value=1.6 Score=36.48 Aligned_cols=30 Identities=10% Similarity=0.352 Sum_probs=26.4
Q ss_pred ceeEEEEEEeCCCCcEEEEEEecCCCeeEEeC
Q 011139 76 IGLYFTKVKLGSPPKEFNVQIDTGSDILWVTC 107 (492)
Q Consensus 76 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~ 107 (492)
.+.+++++.|+. +++++++|||++.+.+..
T Consensus 24 ~~~~~v~v~InG--~~~~~LvDTGAs~s~is~ 53 (148)
T 2i1a_A 24 VPMLYINIEINN--YPVKAFVDTGAQTTIMST 53 (148)
T ss_dssp CCCCEEEEEETT--EEEEEEECTTCSSCEEEH
T ss_pred cceEEEEEEECC--EEEEEEEECCCCccccCH
Confidence 367899999997 899999999999988864
No 43
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=78.66 E-value=2.7 Score=32.60 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=23.8
Q ss_pred EEEEEeCCCCcEEEEEEecCCCeeEEeCC
Q 011139 80 FTKVKLGSPPKEFNVQIDTGSDILWVTCS 108 (492)
Q Consensus 80 ~~~i~iGtP~q~~~v~~DTGSs~~wv~~~ 108 (492)
++.+.||. |.+.+++|||.+++-+...
T Consensus 10 ~vti~I~G--q~~e~LLDTGAD~TVl~~~ 36 (99)
T 3ec0_A 10 VVTAYIEG--QPVEVLLDTGADDSIVAGI 36 (99)
T ss_dssp EEEEEETT--EEEEEEECTTCSSCEESSC
T ss_pred eEEEEECC--EEEEEEEecCCCceEEcCc
Confidence 47799998 9999999999999999654
No 44
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*
Probab=73.34 E-value=2.9 Score=33.13 Aligned_cols=29 Identities=28% Similarity=0.465 Sum_probs=24.2
Q ss_pred EEEEeC---CCCcEEEEEEecCCCeeEEeCCC
Q 011139 81 TKVKLG---SPPKEFNVQIDTGSDILWVTCSS 109 (492)
Q Consensus 81 ~~i~iG---tP~q~~~v~~DTGSs~~wv~~~~ 109 (492)
+.|.|| +|+|.+..++|||-+++-+....
T Consensus 13 vtikI~~~~~~Gq~~eaLLDTGADdTVl~~~~ 44 (116)
T 3liy_A 13 IKAQVDTQTSHPKTIEALLDTGADMTVIPIAL 44 (116)
T ss_dssp EEEEEECSSSCCEEEEEEECTTBSSCEEEGGG
T ss_pred EEEEEccccCCCeEeEEEeccCCCccEEeccc
Confidence 556666 78999999999999999998654
No 45
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=71.87 E-value=3.2 Score=34.87 Aligned_cols=30 Identities=10% Similarity=0.360 Sum_probs=26.6
Q ss_pred eeEEEEEEeCCCCcEEEEEEecCCCeeEEeCC
Q 011139 77 GLYFTKVKLGSPPKEFNVQIDTGSDILWVTCS 108 (492)
Q Consensus 77 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~ 108 (492)
..|++++.|.. +++++++|||++.+.+...
T Consensus 23 ~~l~v~~~Ing--~~v~~LVDTGAs~s~Is~~ 52 (148)
T 3s8i_A 23 TMLYINCKVNG--HPLKAFVDSGAQMTIMSQA 52 (148)
T ss_dssp CCCEEEEEETT--EEEEEEECTTCSSCEEEHH
T ss_pred CEEEEEEEECC--EEEEEEEeCCCCcEeeCHH
Confidence 47899999987 9999999999999998654
No 46
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=70.43 E-value=3.9 Score=32.73 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=22.3
Q ss_pred EEEEEeCCCCcEEEEEEecCCCeeEEeC
Q 011139 80 FTKVKLGSPPKEFNVQIDTGSDILWVTC 107 (492)
Q Consensus 80 ~~~i~iGtP~q~~~v~~DTGSs~~wv~~ 107 (492)
++ |.||. |.+..++|||.+++-+..
T Consensus 16 ~v-ikI~G--q~~eaLLDTGAD~TVi~~ 40 (116)
T 2hah_A 16 IL-IFVNG--YPIKFLLDTGADITVLNR 40 (116)
T ss_dssp EE-EEETT--EEEEEEECTTCSSCEEEG
T ss_pred EE-EEECC--EEEEEEecCCCCcEEEcc
Confidence 35 99997 999999999999999975
No 47
>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A
Probab=61.86 E-value=7.9 Score=30.75 Aligned_cols=28 Identities=25% Similarity=0.314 Sum_probs=24.3
Q ss_pred EEEEEeCCCCcEEEEEEecCCCeeEEeCCC
Q 011139 80 FTKVKLGSPPKEFNVQIDTGSDILWVTCSS 109 (492)
Q Consensus 80 ~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~ 109 (492)
.+.+.||. |.+..++|||-+++-+....
T Consensus 11 ~vti~I~G--q~~eaLLDTGADdTVi~~~~ 38 (114)
T 3sqf_A 11 SLTLWLDD--KMFTGLINTGADVTIIKLED 38 (114)
T ss_dssp EEEEEETT--EEEEEEECTTCSSCEEEGGG
T ss_pred eEEEEECC--EEEEEEEccCCCceEEeccc
Confidence 46789998 99999999999999997643
No 48
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=53.37 E-value=16 Score=29.89 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=24.8
Q ss_pred eEEEEEEeCCCCcEEEEEEecCCCeeEEeCC
Q 011139 78 LYFTKVKLGSPPKEFNVQIDTGSDILWVTCS 108 (492)
Q Consensus 78 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~ 108 (492)
.-++.+.|+. |.+..++|||.+++-+...
T Consensus 22 RP~v~i~I~G--~~~~~LlDTGAd~tVl~~~ 50 (132)
T 3slz_A 22 EPRITLKVGG--QPVTFLVDTGAQHSVLTQN 50 (132)
T ss_dssp SSEEEEEETT--EEEEEEECTTCSSCEECSC
T ss_pred CCEEEEEECC--EEEEEEEeCCCCeEEEccc
Confidence 3457799998 9999999999999999754
No 49
>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*
Probab=45.87 E-value=21 Score=28.77 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=19.6
Q ss_pred eCCCCcEEEEEEecCCCeeEEeCCC
Q 011139 85 LGSPPKEFNVQIDTGSDILWVTCSS 109 (492)
Q Consensus 85 iGtP~q~~~v~~DTGSs~~wv~~~~ 109 (492)
||. |.+..++|||-+++-+....
T Consensus 27 i~g--q~~eaLLDTGAD~TVl~~~~ 49 (124)
T 2rsp_A 27 QRS--VYITALLDSGADITIISEED 49 (124)
T ss_dssp CSE--EEEEEEECTTCSSCEEETTT
T ss_pred CCC--EEEEEEecCCCCcEEEeccc
Confidence 666 88999999999999998643
No 50
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=43.22 E-value=20 Score=31.60 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=23.8
Q ss_pred EEEEEEeCCCCcEEEEEEecCCCeeEEeC
Q 011139 79 YFTKVKLGSPPKEFNVQIDTGSDILWVTC 107 (492)
Q Consensus 79 Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~ 107 (492)
-.+.|.||. |.+..++|||-+++-+..
T Consensus 9 P~vtv~I~G--q~~e~LLDTGAD~TVl~~ 35 (203)
T 3ka2_A 9 PLVTIRIGG--QLKEALLDTGADDTVIEE 35 (203)
T ss_dssp CEEEEEETT--EEEEEEECTTCSSCEECS
T ss_pred CeEEEEECC--EEEEEEEecCCCceEEec
Confidence 357899998 999999999999998864
No 51
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=29.65 E-value=36 Score=21.11 Aligned_cols=19 Identities=11% Similarity=-0.053 Sum_probs=13.2
Q ss_pred CCchhhhhcccchhhHHHH
Q 011139 461 SSSSIEMLFKVLPLSILAL 479 (492)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~ 479 (492)
+..+.+++++++..+++.+
T Consensus 6 ~~ls~GaIAGiVvG~v~gv 24 (38)
T 2k1k_A 6 RGLTGGEIVAVIFGLLLGA 24 (38)
T ss_dssp TTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCceeeeehHHHHHH
Confidence 4456778888888877543
No 52
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=24.54 E-value=84 Score=27.57 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=23.8
Q ss_pred EEEEEEeCCCCcEEEEEEecCCCeeEEeC
Q 011139 79 YFTKVKLGSPPKEFNVQIDTGSDILWVTC 107 (492)
Q Consensus 79 Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~ 107 (492)
=.+++.||. |.+..++|||-+++-+..
T Consensus 113 P~~~iki~G--q~~e~LlDTGAD~TVl~~ 139 (203)
T 3ka2_A 113 PLVTIRIGG--QLKEALLDTGADDTVIEE 139 (203)
T ss_dssp CEEEEEETT--EEEEEEECTTCSSCEECS
T ss_pred CcEEEEECC--EEEeeeecccCCceeeec
Confidence 357899998 999999999999999864
No 53
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=21.48 E-value=70 Score=28.60 Aligned_cols=31 Identities=16% Similarity=0.162 Sum_probs=23.2
Q ss_pred eeEEEE---EEeCCC-----CcEEEEEEecCCCeeEEeC
Q 011139 77 GLYFTK---VKLGSP-----PKEFNVQIDTGSDILWVTC 107 (492)
Q Consensus 77 ~~Y~~~---i~iGtP-----~q~~~v~~DTGSs~~wv~~ 107 (492)
+.|.++ |.||.- .....++||||++.+++|.
T Consensus 188 ~~~~v~l~~i~v~~~~~~~~~~~~~aiiDTGTt~~~lP~ 226 (239)
T 1b5f_A 188 YYWQFGIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGPT 226 (239)
T ss_dssp TTEEEEECCEEETTEECCTTTTCEEEEECTTCSSEEECH
T ss_pred CeEEEEeeEEEECCEEecccCCCCEEEEecCcchhhCCH
Confidence 456554 678762 3457899999999999985
Done!