Query 011140
Match_columns 492
No_of_seqs 240 out of 1214
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 08:34:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011140.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011140hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01363 FYVE: FYVE zinc finge 99.8 2.1E-19 4.7E-24 144.1 2.8 66 420-485 1-68 (69)
2 smart00064 FYVE Protein presen 99.7 1.3E-17 2.8E-22 133.5 4.0 66 420-485 2-67 (68)
3 KOG1818 Membrane trafficking a 99.7 1.3E-17 2.9E-22 181.2 1.0 70 417-489 157-226 (634)
4 KOG1729 FYVE finger containing 99.6 3.2E-17 7E-22 165.4 1.3 71 415-486 155-226 (288)
5 PTZ00303 phosphatidylinositol 99.5 9.3E-15 2E-19 159.9 4.2 67 418-484 449-529 (1374)
6 KOG1819 FYVE finger-containing 99.4 1.8E-14 3.9E-19 152.2 1.4 65 419-483 892-961 (990)
7 cd00065 FYVE FYVE domain; Zinc 99.4 4.8E-14 1E-18 108.8 2.4 55 428-482 2-56 (57)
8 KOG1842 FYVE finger-containing 99.4 6.7E-14 1.5E-18 146.4 -1.5 71 419-489 171-263 (505)
9 KOG0509 Ankyrin repeat and DHH 99.1 1.4E-11 3.1E-16 133.6 0.7 79 229-328 77-156 (600)
10 PF13857 Ank_5: Ankyrin repeat 99.0 3E-11 6.5E-16 93.3 -2.1 55 269-324 1-56 (56)
11 KOG1841 Smad anchor for recept 99.0 1.3E-10 2.8E-15 132.0 0.8 62 418-480 547-608 (1287)
12 KOG4412 26S proteasome regulat 99.0 2.5E-10 5.4E-15 109.2 2.2 70 257-327 79-149 (226)
13 KOG0509 Ankyrin repeat and DHH 98.8 6E-10 1.3E-14 121.3 0.9 101 218-327 101-222 (600)
14 PHA02859 ankyrin repeat protei 98.8 3.9E-10 8.4E-15 108.0 -2.5 61 263-324 66-130 (209)
15 KOG4412 26S proteasome regulat 98.8 2.3E-09 5.1E-14 102.6 2.8 71 257-328 45-117 (226)
16 PHA02878 ankyrin repeat protei 98.8 1.1E-09 2.3E-14 116.0 -0.8 76 230-326 168-243 (477)
17 PHA02736 Viral ankyrin protein 98.7 1.4E-09 2.9E-14 98.2 -0.5 63 264-327 72-136 (154)
18 PHA02743 Viral ankyrin protein 98.7 1.1E-09 2.3E-14 101.3 -1.3 81 229-327 56-138 (166)
19 KOG0508 Ankyrin repeat protein 98.7 4.9E-09 1.1E-13 111.5 2.6 77 228-325 115-191 (615)
20 KOG0195 Integrin-linked kinase 98.7 3.8E-09 8.2E-14 107.0 1.1 79 228-327 32-110 (448)
21 PHA02791 ankyrin-like protein; 98.7 2E-09 4.2E-14 108.8 -1.2 70 258-328 69-139 (284)
22 PF12796 Ank_2: Ankyrin repeat 98.7 1.8E-09 3.9E-14 88.2 -1.4 64 259-327 6-69 (89)
23 PHA02875 ankyrin repeat protei 98.7 2.2E-09 4.8E-14 110.8 -1.2 67 260-327 112-178 (413)
24 PHA02859 ankyrin repeat protei 98.7 2.3E-09 5E-14 102.6 -1.0 79 228-324 85-165 (209)
25 PHA02791 ankyrin-like protein; 98.7 2.5E-09 5.4E-14 108.1 -1.2 78 228-328 28-105 (284)
26 PHA02741 hypothetical protein; 98.7 2.4E-09 5.1E-14 98.8 -1.3 64 263-327 77-142 (169)
27 PHA02884 ankyrin repeat protei 98.7 2.9E-09 6.4E-14 108.6 -1.0 77 229-326 69-146 (300)
28 KOG4177 Ankyrin [Cell wall/mem 98.7 4.5E-09 9.7E-14 121.9 0.3 72 256-328 546-617 (1143)
29 PHA02989 ankyrin repeat protei 98.7 3.7E-09 8E-14 112.7 -0.4 84 227-325 66-153 (494)
30 PHA03095 ankyrin-like protein; 98.6 4.5E-09 9.7E-14 109.6 -0.3 65 263-328 237-301 (471)
31 PHA02795 ankyrin-like protein; 98.6 4.2E-09 9.1E-14 112.4 -1.0 70 258-328 196-265 (437)
32 KOG0510 Ankyrin repeat protein 98.6 4.9E-09 1.1E-13 116.8 -0.5 103 228-330 271-390 (929)
33 PF12796 Ank_2: Ankyrin repeat 98.6 2.8E-09 6.2E-14 87.1 -2.3 56 257-313 33-88 (89)
34 KOG0512 Fetal globin-inducing 98.6 9.3E-09 2E-13 98.1 0.4 76 229-325 96-171 (228)
35 PHA02946 ankyin-like protein; 98.6 8.4E-09 1.8E-13 109.7 -0.3 65 261-326 50-114 (446)
36 KOG1409 Uncharacterized conser 98.6 1.1E-08 2.5E-13 105.2 0.5 70 414-486 271-351 (404)
37 PHA03095 ankyrin-like protein; 98.6 7.7E-09 1.7E-13 107.9 -0.9 79 229-325 46-125 (471)
38 PHA02874 ankyrin repeat protei 98.6 7.7E-09 1.7E-13 108.1 -0.9 79 228-327 122-200 (434)
39 PHA02741 hypothetical protein; 98.6 6.3E-09 1.4E-13 96.0 -1.6 70 258-328 29-109 (169)
40 KOG0508 Ankyrin repeat protein 98.5 1.5E-08 3.3E-13 107.8 0.1 86 221-328 141-226 (615)
41 PHA02716 CPXV016; CPX019; EVM0 98.5 1.3E-08 2.9E-13 114.9 -0.5 64 261-325 190-255 (764)
42 PHA02874 ankyrin repeat protei 98.5 1.1E-08 2.4E-13 107.0 -1.2 80 228-328 155-234 (434)
43 PHA02798 ankyrin-like protein; 98.5 1.3E-08 2.9E-13 108.3 -0.8 87 225-327 66-155 (489)
44 PLN03192 Voltage-dependent pot 98.5 1.5E-08 3.3E-13 115.0 -1.0 71 257-328 565-666 (823)
45 KOG1843 Uncharacterized conser 98.5 2.5E-08 5.4E-13 104.4 0.5 67 418-484 150-218 (473)
46 PHA02875 ankyrin repeat protei 98.5 2.1E-08 4.5E-13 103.6 -0.3 70 257-327 142-212 (413)
47 PHA02946 ankyin-like protein; 98.5 1.7E-08 3.6E-13 107.5 -1.2 65 261-327 186-252 (446)
48 PHA02878 ankyrin repeat protei 98.5 2E-08 4.4E-13 106.4 -0.9 76 228-324 199-276 (477)
49 PF13637 Ank_4: Ankyrin repeat 98.5 1.2E-08 2.7E-13 77.5 -2.0 44 260-303 11-54 (54)
50 PHA03100 ankyrin repeat protei 98.5 2.8E-08 6.1E-13 104.1 -0.4 67 260-327 118-186 (480)
51 PHA02730 ankyrin-like protein; 98.4 2.9E-08 6.3E-13 110.7 -1.0 82 228-326 39-123 (672)
52 PHA02884 ankyrin repeat protei 98.4 3E-08 6.5E-13 101.3 -1.0 71 257-328 40-115 (300)
53 PHA02917 ankyrin-like protein; 98.4 4.2E-08 9.1E-13 109.6 -0.4 100 226-326 392-494 (661)
54 PLN03192 Voltage-dependent pot 98.4 3.9E-08 8.4E-13 111.8 -0.9 70 257-327 532-601 (823)
55 PTZ00322 6-phosphofructo-2-kin 98.4 4E-08 8.7E-13 109.6 -0.9 71 257-328 89-159 (664)
56 PHA02876 ankyrin repeat protei 98.4 5.1E-08 1.1E-12 107.9 -0.5 65 261-326 420-485 (682)
57 COG0666 Arp FOG: Ankyrin repea 98.3 1.3E-07 2.8E-12 85.1 1.1 93 220-328 96-191 (235)
58 KOG0502 Integral membrane anky 98.3 1.2E-07 2.6E-12 93.4 0.9 74 258-332 168-241 (296)
59 PHA02989 ankyrin repeat protei 98.3 6.2E-08 1.3E-12 103.4 -1.6 66 261-328 235-300 (494)
60 PHA03100 ankyrin repeat protei 98.3 1.2E-07 2.5E-12 99.5 0.5 71 257-328 80-152 (480)
61 PHA02798 ankyrin-like protein; 98.3 7.6E-08 1.7E-12 102.6 -1.0 82 228-327 107-192 (489)
62 KOG0514 Ankyrin repeat protein 98.3 1E-07 2.2E-12 99.2 -0.3 68 257-324 347-414 (452)
63 PHA02716 CPXV016; CPX019; EVM0 98.3 1.3E-07 2.8E-12 107.1 -0.1 62 261-323 330-405 (764)
64 TIGR00870 trp transient-recept 98.3 4.8E-08 1E-12 109.3 -3.7 79 229-328 127-219 (743)
65 PHA02876 ankyrin repeat protei 98.3 1.2E-07 2.7E-12 104.9 -0.5 69 258-327 153-221 (682)
66 PHA02743 Viral ankyrin protein 98.3 1.9E-07 4.1E-12 86.3 0.8 69 228-317 92-161 (166)
67 PHA02792 ankyrin-like protein; 98.3 1.1E-07 2.3E-12 105.5 -1.6 63 263-326 390-452 (631)
68 PHA02736 Viral ankyrin protein 98.3 1.7E-07 3.7E-12 84.5 -0.1 52 257-308 99-151 (154)
69 PHA02917 ankyrin-like protein; 98.2 1.6E-07 3.5E-12 104.9 -1.0 70 258-328 146-240 (661)
70 KOG4424 Predicted Rho/Rac guan 98.2 3E-07 6.6E-12 99.8 0.7 62 419-483 408-470 (623)
71 KOG0502 Integral membrane anky 98.2 4.8E-07 1E-11 89.2 1.4 96 228-324 158-266 (296)
72 KOG0510 Ankyrin repeat protein 98.1 3.9E-07 8.4E-12 102.1 -0.5 64 263-327 101-164 (929)
73 PF13857 Ank_5: Ankyrin repeat 98.1 1.5E-07 3.3E-12 72.6 -2.7 44 227-290 13-56 (56)
74 PHA02795 ankyrin-like protein; 98.1 5.7E-07 1.2E-11 96.3 -0.7 69 228-317 219-295 (437)
75 KOG0505 Myosin phosphatase, re 98.1 7.1E-07 1.5E-11 96.2 -0.0 79 230-329 198-276 (527)
76 KOG4214 Myotrophin and similar 98.1 4.7E-07 1E-11 79.1 -1.6 74 222-320 30-103 (117)
77 KOG1811 Predicted Zn2+-binding 98.0 4.3E-07 9.4E-12 99.2 -2.9 64 420-483 314-382 (1141)
78 COG0666 Arp FOG: Ankyrin repea 98.0 9.1E-07 2E-11 79.6 -0.5 71 258-328 81-158 (235)
79 KOG0505 Myosin phosphatase, re 98.0 2.2E-06 4.7E-11 92.5 1.7 80 228-328 71-150 (527)
80 KOG0515 p53-interacting protei 98.0 2.2E-06 4.7E-11 92.6 1.6 71 257-328 557-627 (752)
81 KOG1710 MYND Zn-finger and ank 98.0 7.6E-07 1.6E-11 90.6 -2.1 65 261-326 56-121 (396)
82 PHA02730 ankyrin-like protein; 98.0 1.2E-06 2.7E-11 97.9 -0.7 62 264-326 443-505 (672)
83 cd00204 ANK ankyrin repeats; 97.9 1.1E-06 2.4E-11 72.4 -1.2 78 229-327 6-83 (126)
84 PTZ00322 6-phosphofructo-2-kin 97.9 2E-06 4.4E-11 96.1 0.5 73 228-321 113-192 (664)
85 KOG4177 Ankyrin [Cell wall/mem 97.9 3.7E-06 8E-11 98.2 1.7 90 220-330 199-288 (1143)
86 KOG0512 Fetal globin-inducing 97.9 2.7E-06 5.8E-11 81.6 -0.0 65 263-328 76-141 (228)
87 cd00204 ANK ankyrin repeats; 97.8 2.2E-06 4.8E-11 70.7 -1.1 79 228-327 38-116 (126)
88 KOG0783 Uncharacterized conser 97.8 5.5E-06 1.2E-10 93.2 0.4 81 238-326 47-128 (1267)
89 KOG0507 CASK-interacting adapt 97.8 9.1E-06 2E-10 90.8 1.4 71 256-327 88-158 (854)
90 KOG3676 Ca2+-permeable cation 97.7 3.8E-06 8.2E-11 94.2 -1.7 70 258-328 192-284 (782)
91 PF13637 Ank_4: Ankyrin repeat 97.7 2.9E-06 6.2E-11 64.4 -2.3 45 283-328 1-45 (54)
92 KOG0507 CASK-interacting adapt 97.7 1.4E-05 3.1E-10 89.3 2.0 70 257-327 56-125 (854)
93 PF00023 Ank: Ankyrin repeat H 97.7 8.7E-06 1.9E-10 56.3 0.1 33 282-315 1-33 (33)
94 KOG0514 Ankyrin repeat protein 97.6 1.7E-05 3.6E-10 83.0 1.0 62 265-328 322-384 (452)
95 PHA02792 ankyrin-like protein; 97.6 4.3E-05 9.4E-10 85.2 3.7 72 257-328 79-186 (631)
96 KOG0195 Integrin-linked kinase 97.6 1.7E-05 3.6E-10 81.1 0.1 67 257-324 74-140 (448)
97 PF13606 Ank_3: Ankyrin repeat 97.5 1.6E-05 3.5E-10 54.7 -0.2 29 282-311 1-29 (30)
98 KOG0515 p53-interacting protei 97.5 2.6E-05 5.7E-10 84.5 0.5 53 256-308 589-641 (752)
99 TIGR00870 trp transient-recept 97.5 1.3E-05 2.9E-10 89.9 -2.4 70 259-328 184-268 (743)
100 KOG0260 RNA polymerase II, lar 97.3 0.0051 1.1E-07 72.1 15.8 8 29-36 1446-1453(1605)
101 KOG0521 Putative GTPase activa 97.2 8.6E-05 1.9E-09 84.8 0.7 69 256-325 662-730 (785)
102 KOG0522 Ankyrin repeat protein 97.2 6.6E-05 1.4E-09 81.4 -0.2 76 232-327 22-98 (560)
103 PF00023 Ank: Ankyrin repeat H 97.1 0.0001 2.2E-09 50.9 -0.5 33 229-281 1-33 (33)
104 KOG4214 Myotrophin and similar 97.1 9E-05 1.9E-09 65.0 -1.1 74 257-332 9-82 (117)
105 KOG4369 RTK signaling protein 96.9 0.00031 6.8E-09 81.5 1.4 74 256-330 763-837 (2131)
106 KOG0818 GTPase-activating prot 96.8 0.00033 7.1E-09 75.7 -0.2 70 256-326 139-209 (669)
107 KOG0705 GTPase-activating prot 96.7 0.0003 6.6E-09 77.1 -1.0 71 256-327 630-704 (749)
108 PF13606 Ank_3: Ankyrin repeat 96.7 0.00042 9E-09 47.7 -0.1 30 229-278 1-30 (30)
109 PF02318 FYVE_2: FYVE-type zin 96.6 0.0012 2.7E-08 58.8 2.7 52 428-486 54-106 (118)
110 KOG3676 Ca2+-permeable cation 96.6 0.00026 5.7E-09 79.9 -2.6 72 257-328 247-319 (782)
111 KOG4369 RTK signaling protein 96.6 0.0012 2.6E-08 77.0 2.6 70 257-327 1001-1070(2131)
112 KOG0260 RNA polymerase II, lar 96.5 0.056 1.2E-06 63.9 15.2 11 141-151 1575-1585(1605)
113 KOG0230 Phosphatidylinositol-4 96.3 0.0018 3.9E-08 77.2 2.3 34 423-458 92-125 (1598)
114 KOG0230 Phosphatidylinositol-4 95.9 0.0034 7.3E-08 75.1 2.0 32 427-461 4-35 (1598)
115 KOG1924 RhoA GTPase effector D 95.8 0.048 1.1E-06 62.2 10.0 10 444-453 885-894 (1102)
116 KOG0506 Glutaminase (contains 95.7 0.0064 1.4E-07 65.9 2.8 67 257-324 513-580 (622)
117 KOG1924 RhoA GTPase effector D 95.6 0.043 9.3E-07 62.6 8.7 22 263-284 716-737 (1102)
118 KOG0705 GTPase-activating prot 95.4 0.005 1.1E-07 67.9 0.6 61 228-308 659-719 (749)
119 KOG1710 MYND Zn-finger and ank 95.3 0.0029 6.4E-08 65.0 -1.4 70 259-329 21-91 (396)
120 KOG0783 Uncharacterized conser 94.8 0.01 2.3E-07 67.8 0.9 51 276-327 45-96 (1267)
121 KOG0511 Ankyrin repeat protein 94.8 0.0073 1.6E-07 64.0 -0.4 65 257-322 43-107 (516)
122 KOG0818 GTPase-activating prot 94.5 0.012 2.6E-07 64.2 0.4 60 226-305 163-222 (669)
123 KOG0782 Predicted diacylglycer 94.2 0.0087 1.9E-07 66.0 -1.3 66 257-323 906-973 (1004)
124 KOG0520 Uncharacterized conser 94.2 0.024 5.1E-07 66.1 2.0 61 259-319 616-677 (975)
125 KOG1841 Smad anchor for recept 94.2 0.021 4.6E-07 66.9 1.6 57 417-486 646-702 (1287)
126 KOG2384 Major histocompatibili 93.3 0.017 3.6E-07 56.6 -1.0 54 273-327 2-56 (223)
127 KOG1729 FYVE finger containing 92.8 0.025 5.5E-07 58.2 -0.6 65 419-483 11-81 (288)
128 KOG0993 Rab5 GTPase effector R 92.6 0.0053 1.1E-07 65.4 -5.9 66 419-486 459-526 (542)
129 smart00248 ANK ankyrin repeats 92.5 0.033 7.1E-07 33.7 -0.2 26 283-308 2-27 (30)
130 KOG0521 Putative GTPase activa 92.2 0.05 1.1E-06 62.8 0.7 60 270-330 641-702 (785)
131 KOG0522 Ankyrin repeat protein 92.1 0.038 8.2E-07 60.7 -0.4 47 257-303 62-108 (560)
132 KOG0320 Predicted E3 ubiquitin 91.5 0.02 4.2E-07 55.2 -3.0 51 428-488 131-181 (187)
133 KOG2384 Major histocompatibili 91.2 0.047 1E-06 53.5 -0.8 57 230-306 12-69 (223)
134 KOG3671 Actin regulatory prote 84.1 27 0.00058 39.0 14.3 9 12-20 316-324 (569)
135 KOG2505 Ankyrin repeat protein 83.0 0.43 9.4E-06 52.5 0.5 62 263-325 404-471 (591)
136 TIGR00622 ssl1 transcription f 82.7 1.3 2.8E-05 40.0 3.3 55 419-481 46-110 (112)
137 KOG3576 Ovo and related transc 81.7 0.39 8.5E-06 47.7 -0.4 33 424-456 113-157 (267)
138 PRK00464 nrdR transcriptional 80.2 0.86 1.9E-05 43.1 1.3 25 430-454 2-38 (154)
139 KOG0520 Uncharacterized conser 78.6 1 2.2E-05 53.1 1.5 79 207-305 605-702 (975)
140 PF07975 C1_4: TFIIH C1-like d 77.7 0.66 1.4E-05 36.4 -0.2 44 430-481 1-50 (51)
141 smart00154 ZnF_AN1 AN1-like Zi 77.5 1.4 3E-05 32.4 1.4 26 431-458 1-26 (39)
142 PHA02768 hypothetical protein; 77.2 1 2.2E-05 35.9 0.7 25 430-454 7-41 (55)
143 KOG1830 Wiskott Aldrich syndro 77.1 1.1E+02 0.0023 34.0 15.7 17 85-101 345-361 (518)
144 PF13717 zinc_ribbon_4: zinc-r 77.1 1.4 3.1E-05 31.8 1.4 25 430-454 4-35 (36)
145 KOG4275 Predicted E3 ubiquitin 76.8 0.45 9.7E-06 49.3 -1.7 48 426-482 42-89 (350)
146 KOG1985 Vesicle coat complex C 76.8 29 0.00062 40.8 12.1 14 470-483 604-617 (887)
147 KOG0317 Predicted E3 ubiquitin 74.6 0.52 1.1E-05 48.6 -1.9 46 428-485 239-284 (293)
148 PF09538 FYDLN_acid: Protein o 74.2 2 4.4E-05 38.4 1.9 26 429-454 10-36 (108)
149 PF13719 zinc_ribbon_5: zinc-r 73.5 2 4.4E-05 31.0 1.4 26 429-454 3-35 (37)
150 KOG0506 Glutaminase (contains 72.4 1.4 2.9E-05 48.6 0.4 50 256-305 545-595 (622)
151 KOG2164 Predicted E3 ubiquitin 72.2 1 2.3E-05 49.6 -0.5 51 429-486 187-237 (513)
152 PF14634 zf-RING_5: zinc-RING 69.6 1.2 2.6E-05 32.9 -0.5 33 430-463 1-33 (44)
153 PRK03564 formate dehydrogenase 69.3 3.5 7.5E-05 43.1 2.6 57 428-484 187-262 (309)
154 PLN03208 E3 ubiquitin-protein 69.1 1.2 2.5E-05 43.8 -0.9 56 427-486 17-80 (193)
155 KOG2932 E3 ubiquitin ligase in 68.8 2 4.4E-05 45.0 0.7 49 427-489 89-137 (389)
156 KOG0307 Vesicle coat complex C 67.5 1.1E+02 0.0023 37.3 14.2 20 299-321 955-974 (1049)
157 TIGR01562 FdhE formate dehydro 66.4 6.3 0.00014 41.2 3.8 58 428-485 184-263 (305)
158 PF01485 IBR: IBR domain; Int 64.7 5.2 0.00011 30.7 2.2 33 428-460 18-56 (64)
159 KOG0978 E3 ubiquitin ligase in 64.6 0.83 1.8E-05 52.2 -3.2 45 427-482 642-686 (698)
160 TIGR02300 FYDLN_acid conserved 64.4 4.1 8.8E-05 37.7 1.7 26 429-454 10-36 (129)
161 COG2126 RPL37A Ribosomal prote 63.5 3.4 7.3E-05 33.5 0.9 22 430-452 18-39 (61)
162 KOG3896 Dynactin, subunit p62 63.0 2.4 5.3E-05 44.9 0.0 30 433-463 14-43 (449)
163 PF12773 DZR: Double zinc ribb 62.8 5 0.00011 30.1 1.7 28 426-453 10-38 (50)
164 cd00162 RING RING-finger (Real 61.6 0.8 1.7E-05 31.9 -2.7 30 430-462 1-30 (45)
165 KOG3799 Rab3 effector RIM1 and 60.6 4.7 0.0001 37.8 1.4 49 430-483 67-116 (169)
166 PF01529 zf-DHHC: DHHC palmito 59.3 5 0.00011 36.9 1.4 26 427-454 47-72 (174)
167 TIGR00570 cdk7 CDK-activating 58.8 2.4 5.2E-05 44.3 -0.9 47 429-484 4-53 (309)
168 KOG3609 Receptor-activated Ca2 57.7 4.4 9.5E-05 47.2 0.9 27 282-308 130-156 (822)
169 KOG1814 Predicted E3 ubiquitin 57.2 4.6 0.0001 43.7 0.9 42 420-462 361-404 (445)
170 PF13639 zf-RING_2: Ring finge 56.5 3.4 7.4E-05 30.2 -0.2 33 430-463 2-34 (44)
171 PF07282 OrfB_Zn_ribbon: Putat 56.1 7.4 0.00016 31.0 1.7 27 428-454 28-56 (69)
172 KOG0917 Uncharacterized conser 55.5 92 0.002 32.6 9.7 29 23-53 169-197 (338)
173 KOG0782 Predicted diacylglycer 55.3 1.2 2.6E-05 49.9 -3.9 63 270-332 886-950 (1004)
174 KOG1314 DHHC-type Zn-finger pr 54.7 4.1 8.9E-05 43.4 0.0 33 419-453 77-114 (414)
175 PF10571 UPF0547: Uncharacteri 54.4 7.2 0.00016 26.5 1.1 23 430-454 2-24 (26)
176 KOG1830 Wiskott Aldrich syndro 53.5 1.9E+02 0.0041 32.1 12.0 10 114-123 355-364 (518)
177 PF03107 C1_2: C1 domain; Int 52.5 11 0.00025 25.9 1.9 29 430-459 2-30 (30)
178 PRK14559 putative protein seri 52.5 8.2 0.00018 44.2 1.9 31 427-461 14-50 (645)
179 KOG3576 Ovo and related transc 51.9 2.1 4.5E-05 42.7 -2.5 54 428-481 145-219 (267)
180 PRK00398 rpoP DNA-directed RNA 51.9 8.4 0.00018 28.8 1.3 25 430-454 5-31 (46)
181 PF13445 zf-RING_UBOX: RING-ty 51.5 5.3 0.00012 30.0 0.2 31 431-462 1-31 (43)
182 KOG3173 Predicted Zn-finger pr 51.0 8.1 0.00018 37.0 1.4 28 428-458 105-132 (167)
183 PF15135 UPF0515: Uncharacteri 50.8 9.1 0.0002 39.2 1.7 33 423-455 127-166 (278)
184 KOG2593 Transcription initiati 50.7 6.6 0.00014 42.8 0.8 34 428-461 128-170 (436)
185 KOG3836 HLH transcription fact 50.5 8.3 0.00018 43.6 1.5 62 257-319 403-464 (605)
186 smart00647 IBR In Between Ring 50.1 14 0.0003 28.3 2.3 32 430-461 20-57 (64)
187 TIGR01031 rpmF_bact ribosomal 49.6 10 0.00022 30.0 1.5 27 422-452 19-47 (55)
188 KOG1311 DHHC-type Zn-finger pr 49.3 10 0.00022 38.6 1.9 33 420-454 103-137 (299)
189 PRK04023 DNA polymerase II lar 48.3 12 0.00026 44.8 2.5 29 428-460 626-659 (1121)
190 TIGR02098 MJ0042_CXXC MJ0042 f 48.0 11 0.00023 26.8 1.3 12 430-441 4-15 (38)
191 PF09889 DUF2116: Uncharacteri 47.8 11 0.00024 30.4 1.5 31 444-490 3-34 (59)
192 KOG0132 RNA polymerase II C-te 47.7 1.9E+02 0.0042 34.2 11.6 8 23-30 575-582 (894)
193 PF01907 Ribosomal_L37e: Ribos 47.1 10 0.00022 30.4 1.1 7 447-453 18-24 (55)
194 PF09332 Mcm10: Mcm10 replicat 46.7 7.5 0.00016 41.3 0.4 23 430-452 287-311 (344)
195 PRK00432 30S ribosomal protein 45.9 15 0.00032 28.6 1.8 27 428-454 20-47 (50)
196 KOG4849 mRNA cleavage factor I 45.4 4.2E+02 0.0091 28.9 12.9 11 231-241 354-364 (498)
197 PF06750 DiS_P_DiS: Bacterial 45.1 13 0.00029 32.1 1.7 26 428-453 33-67 (92)
198 COG0675 Transposase and inacti 44.9 14 0.0003 36.7 2.0 25 427-454 308-332 (364)
199 KOG1315 Predicted DHHC-type Zn 44.6 9.8 0.00021 39.9 0.9 28 423-452 104-131 (307)
200 COG5574 PEX10 RING-finger-cont 44.4 6.7 0.00015 40.3 -0.3 46 429-484 216-261 (271)
201 KOG0153 Predicted RNA-binding 44.4 4.4 9.5E-05 43.1 -1.7 17 427-443 40-56 (377)
202 KOG3609 Receptor-activated Ca2 44.3 8.9 0.00019 44.8 0.6 52 256-307 31-86 (822)
203 COG1996 RPC10 DNA-directed RNA 44.1 10 0.00023 29.6 0.8 24 429-452 7-32 (49)
204 TIGR02605 CxxC_CxxC_SSSS putat 43.8 10 0.00022 28.7 0.6 23 430-452 7-34 (52)
205 TIGR00599 rad18 DNA repair pro 43.6 7.1 0.00015 42.2 -0.3 31 428-462 26-56 (397)
206 PF03604 DNA_RNApol_7kD: DNA d 43.3 15 0.00032 26.2 1.4 23 430-452 2-25 (32)
207 PF07503 zf-HYPF: HypF finger; 42.6 6.3 0.00014 28.6 -0.6 23 430-452 1-29 (35)
208 KOG2462 C2H2-type Zn-finger pr 42.2 9.5 0.00021 39.4 0.4 54 428-483 187-252 (279)
209 PF07191 zinc-ribbons_6: zinc- 42.1 10 0.00022 31.7 0.5 56 430-487 3-63 (70)
210 PRK04136 rpl40e 50S ribosomal 42.0 15 0.00032 28.7 1.3 23 428-452 14-36 (48)
211 PF13923 zf-C3HC4_2: Zinc fing 42.0 9.5 0.00021 27.2 0.2 29 431-462 1-29 (39)
212 KOG2391 Vacuolar sorting prote 41.6 52 0.0011 35.2 5.6 12 49-60 147-158 (365)
213 KOG1985 Vesicle coat complex C 40.4 2.5E+02 0.0054 33.5 11.1 26 12-38 10-35 (887)
214 PF13912 zf-C2H2_6: C2H2-type 40.0 9.2 0.0002 24.9 -0.1 12 430-441 3-14 (27)
215 PF14803 Nudix_N_2: Nudix N-te 39.9 21 0.00045 25.8 1.7 13 469-481 17-29 (34)
216 KOG1356 Putative transcription 39.6 10 0.00023 44.3 0.2 43 419-463 218-262 (889)
217 PRK11595 DNA utilization prote 39.5 8.4 0.00018 37.9 -0.5 31 429-461 21-57 (227)
218 PF08271 TF_Zn_Ribbon: TFIIB z 39.2 18 0.00038 26.7 1.3 25 430-454 2-29 (43)
219 PF06750 DiS_P_DiS: Bacterial 39.1 5.1 0.00011 34.6 -1.8 47 436-487 25-71 (92)
220 COG5178 PRP8 U5 snRNP spliceos 38.6 28 0.00061 42.5 3.4 12 204-218 271-282 (2365)
221 PF10367 Vps39_2: Vacuolar sor 38.3 23 0.00049 29.8 2.1 31 428-460 78-108 (109)
222 TIGR00100 hypA hydrogenase nic 38.3 15 0.00033 32.8 1.0 25 428-452 70-94 (115)
223 smart00291 ZnF_ZZ Zinc-binding 37.4 19 0.00042 26.7 1.3 30 429-460 5-35 (44)
224 PRK14873 primosome assembly pr 36.9 13 0.00029 42.6 0.5 36 429-464 393-434 (665)
225 PF14835 zf-RING_6: zf-RING of 36.8 19 0.00041 29.7 1.3 29 430-462 9-38 (65)
226 COG5273 Uncharacterized protei 36.6 17 0.00036 38.0 1.1 25 428-454 109-133 (309)
227 PRK12286 rpmF 50S ribosomal pr 36.0 20 0.00043 28.6 1.2 20 428-451 27-47 (57)
228 COG1198 PriA Primosomal protei 35.8 23 0.00051 41.2 2.2 34 430-463 446-486 (730)
229 PF02945 Endonuclease_7: Recom 35.2 11 0.00025 32.0 -0.3 32 429-460 23-60 (81)
230 KOG3795 Uncharacterized conser 35.1 18 0.00038 35.5 0.9 24 437-460 8-34 (230)
231 PLN02638 cellulose synthase A 34.8 23 0.0005 42.8 2.1 55 424-485 13-70 (1079)
232 KOG2177 Predicted E3 ubiquitin 34.3 8.6 0.00019 36.3 -1.3 33 428-464 13-45 (386)
233 PRK15319 AIDA autotransporter- 34.1 70 0.0015 41.0 5.9 11 234-244 1807-1817(2039)
234 PF01155 HypA: Hydrogenase exp 34.1 13 0.00028 33.1 -0.1 25 428-452 70-94 (113)
235 PF10263 SprT-like: SprT-like 34.0 21 0.00045 32.5 1.2 26 429-454 124-153 (157)
236 PF00569 ZZ: Zinc finger, ZZ t 33.5 17 0.00038 27.3 0.5 30 428-458 4-34 (46)
237 KOG0307 Vesicle coat complex C 33.4 4.5E+02 0.0098 32.2 12.0 16 47-62 828-843 (1049)
238 cd02249 ZZ Zinc finger, ZZ typ 33.1 19 0.00042 26.9 0.7 31 430-462 2-33 (46)
239 cd02340 ZZ_NBR1_like Zinc fing 33.1 21 0.00047 26.7 0.9 31 430-462 2-33 (43)
240 TIGR00595 priA primosomal prot 32.9 23 0.00049 39.2 1.5 35 430-464 224-265 (505)
241 smart00834 CxxC_CXXC_SSSS Puta 32.6 19 0.00042 25.5 0.6 13 430-442 7-19 (41)
242 PRK00564 hypA hydrogenase nick 32.6 21 0.00047 32.0 1.0 25 428-452 71-96 (117)
243 smart00659 RPOLCX RNA polymera 32.3 24 0.00052 26.7 1.1 23 430-452 4-27 (44)
244 PTZ00073 60S ribosomal protein 31.8 23 0.00049 31.0 1.0 23 429-452 17-39 (91)
245 KOG1074 Transcriptional repres 31.7 12 0.00026 43.9 -0.9 38 444-483 353-390 (958)
246 cd02341 ZZ_ZZZ3 Zinc finger, Z 31.3 22 0.00048 27.4 0.8 32 430-462 2-36 (48)
247 PF10497 zf-4CXXC_R1: Zinc-fin 31.0 15 0.00033 32.6 -0.2 53 428-482 7-69 (105)
248 COG0498 ThrC Threonine synthas 30.8 19 0.00041 39.2 0.4 27 428-454 5-31 (411)
249 PF01927 Mut7-C: Mut7-C RNAse 30.5 33 0.00071 31.7 1.9 13 428-440 91-103 (147)
250 COG3058 FdhE Uncharacterized p 30.2 22 0.00047 37.1 0.7 67 419-485 176-263 (308)
251 PLN02400 cellulose synthase 30.2 29 0.00062 42.0 1.8 55 423-484 31-88 (1085)
252 PF14569 zf-UDP: Zinc-binding 30.0 7.4 0.00016 33.2 -2.2 51 427-484 8-61 (80)
253 PF10892 DUF2688: Protein of u 29.9 18 0.0004 29.2 0.1 10 445-454 11-20 (60)
254 PRK05978 hypothetical protein; 29.4 28 0.0006 33.0 1.2 27 428-454 33-62 (148)
255 smart00184 RING Ring finger. E 29.4 7.1 0.00015 25.9 -2.0 16 447-462 13-28 (39)
256 PF10170 C6_DPF: Cysteine-rich 29.1 26 0.00056 31.1 0.9 33 441-483 46-80 (97)
257 KOG2375 Protein interacting wi 29.0 6.3E+02 0.014 30.0 12.0 25 107-131 610-634 (756)
258 PF15616 TerY-C: TerY-C metal 28.9 26 0.00057 32.5 1.0 25 428-457 77-101 (131)
259 PF14353 CpXC: CpXC protein 28.9 29 0.00063 31.0 1.2 11 444-454 38-48 (128)
260 cd02342 ZZ_UBA_plant Zinc fing 28.9 26 0.00056 26.8 0.7 31 430-461 2-33 (43)
261 KOG2505 Ankyrin repeat protein 28.9 18 0.00039 40.4 -0.1 38 257-294 437-474 (591)
262 PF09723 Zn-ribbon_8: Zinc rib 28.8 23 0.00051 26.2 0.5 11 431-441 8-18 (42)
263 smart00531 TFIIE Transcription 28.8 30 0.00064 32.0 1.3 27 428-454 99-133 (147)
264 COG3364 Zn-ribbon containing p 28.7 27 0.00058 31.4 1.0 22 430-451 4-27 (112)
265 PRK12380 hydrogenase nickel in 28.6 27 0.00058 31.2 1.0 24 429-452 71-94 (113)
266 COG1997 RPL43A Ribosomal prote 28.1 34 0.00075 29.9 1.5 29 428-458 35-67 (89)
267 PF04216 FdhE: Protein involve 28.1 20 0.00043 36.6 0.1 54 429-482 173-246 (290)
268 KOG0823 Predicted E3 ubiquitin 27.8 15 0.00033 37.1 -0.9 49 428-485 47-95 (230)
269 PF14445 Prok-RING_2: Prokaryo 27.6 9.5 0.00021 30.2 -1.8 45 430-486 9-53 (57)
270 PTZ00255 60S ribosomal protein 27.5 32 0.00069 30.1 1.2 31 428-460 36-70 (90)
271 PF06221 zf-C2HC5: Putative zi 27.3 36 0.00078 27.4 1.4 15 443-457 17-31 (57)
272 PRK04179 rpl37e 50S ribosomal 27.1 29 0.00062 28.5 0.8 23 429-452 18-40 (62)
273 PF05458 Siva: Cd27 binding pr 27.1 20 0.00044 34.6 -0.1 47 429-481 125-171 (175)
274 PRK00420 hypothetical protein; 26.7 40 0.00086 30.5 1.7 25 429-453 24-49 (112)
275 PF01286 XPA_N: XPA protein N- 26.6 39 0.00085 24.5 1.3 9 473-481 23-31 (34)
276 PF00097 zf-C3HC4: Zinc finger 26.4 24 0.00052 25.0 0.2 30 431-463 1-30 (41)
277 PF09297 zf-NADH-PPase: NADH p 26.4 41 0.00089 23.3 1.4 24 454-481 5-28 (32)
278 PF07776 zf-AD: Zinc-finger as 26.3 67 0.0015 24.6 2.8 16 471-486 42-57 (75)
279 PRK03824 hypA hydrogenase nick 26.3 31 0.00067 31.7 1.0 13 429-441 71-83 (135)
280 KOG3623 Homeobox transcription 26.3 13 0.00027 43.3 -1.9 12 443-454 280-291 (1007)
281 KOG1818 Membrane trafficking a 25.8 11 0.00024 43.0 -2.4 50 430-480 56-106 (634)
282 PRK05580 primosome assembly pr 25.5 46 0.00099 38.2 2.3 35 430-464 392-433 (679)
283 PRK06260 threonine synthase; V 25.5 40 0.00087 35.9 1.8 25 429-453 4-28 (397)
284 KOG1313 DHHC-type Zn-finger pr 25.4 23 0.0005 36.9 -0.1 24 428-453 102-125 (309)
285 PF08394 Arc_trans_TRASH: Arch 25.3 42 0.00091 24.8 1.3 37 447-488 1-37 (37)
286 PF03833 PolC_DP2: DNA polymer 25.1 24 0.00052 41.7 0.0 28 429-460 656-688 (900)
287 PHA02926 zinc finger-like prot 24.7 19 0.00041 36.5 -0.8 59 421-483 164-228 (242)
288 PF03276 Gag_spuma: Spumavirus 24.6 3.6E+02 0.0077 30.9 8.7 77 16-94 181-262 (582)
289 PLN02436 cellulose synthase A 24.6 33 0.00071 41.5 1.0 55 424-485 32-89 (1094)
290 COG2607 Predicted ATPase (AAA+ 24.6 15 0.00032 38.0 -1.6 23 220-242 87-109 (287)
291 smart00661 RPOL9 RNA polymeras 24.6 53 0.0011 24.5 1.8 25 430-454 2-30 (52)
292 PRK12496 hypothetical protein; 24.5 40 0.00086 32.1 1.3 24 430-453 129-152 (164)
293 COG1439 Predicted nucleic acid 24.3 33 0.00071 33.4 0.8 28 419-453 135-162 (177)
294 PRK03681 hypA hydrogenase nick 24.0 36 0.00079 30.4 1.0 24 429-452 71-95 (114)
295 TIGR00143 hypF [NiFe] hydrogen 24.0 32 0.00068 40.0 0.7 53 428-485 68-129 (711)
296 PHA02942 putative transposase; 23.8 50 0.0011 35.4 2.1 27 428-454 325-352 (383)
297 smart00731 SprT SprT homologue 23.8 46 0.00099 30.5 1.6 26 429-454 113-143 (146)
298 PF05443 ROS_MUCR: ROS/MUCR tr 23.8 24 0.00052 32.8 -0.3 17 428-445 72-88 (132)
299 PRK04351 hypothetical protein; 23.6 40 0.00087 31.7 1.2 9 430-438 114-122 (149)
300 TIGR00373 conserved hypothetic 23.5 36 0.00077 32.1 0.8 43 262-308 16-58 (158)
301 PLN02189 cellulose synthase 23.5 35 0.00076 41.2 0.9 54 425-485 31-87 (1040)
302 PF02591 DUF164: Putative zinc 23.2 42 0.0009 26.0 1.0 25 430-454 24-56 (56)
303 PRK07591 threonine synthase; V 23.1 47 0.001 35.8 1.7 25 429-454 19-43 (421)
304 PF04161 Arv1: Arv1-like famil 23.1 34 0.00074 33.5 0.6 33 430-463 2-42 (208)
305 PRK08197 threonine synthase; V 23.0 45 0.00098 35.5 1.6 24 429-453 8-31 (394)
306 KOG4323 Polycomb-like PHD Zn-f 23.0 31 0.00068 38.2 0.4 54 430-483 170-224 (464)
307 PRK03976 rpl37ae 50S ribosomal 22.8 41 0.0009 29.4 1.0 31 428-460 36-70 (90)
308 smart00504 Ubox Modified RING 22.8 39 0.00084 25.9 0.8 30 430-463 3-32 (63)
309 PF04438 zf-HIT: HIT zinc fing 22.7 43 0.00094 23.4 0.9 23 429-456 3-25 (30)
310 PLN02915 cellulose synthase A 22.7 35 0.00076 41.2 0.8 51 428-485 15-68 (1044)
311 KOG1812 Predicted E3 ubiquitin 22.6 36 0.00079 36.6 0.8 31 429-460 307-339 (384)
312 COG1773 Rubredoxin [Energy pro 22.6 39 0.00084 27.1 0.7 13 442-454 1-13 (55)
313 PRK14714 DNA polymerase II lar 22.5 60 0.0013 40.1 2.6 46 429-483 668-718 (1337)
314 TIGR00280 L37a ribosomal prote 22.5 41 0.00088 29.5 0.9 31 428-460 35-69 (91)
315 PF13920 zf-C3HC4_3: Zinc fing 22.5 5.8 0.00013 29.8 -3.8 44 429-484 3-47 (50)
316 PRK06266 transcription initiat 22.5 35 0.00075 32.9 0.5 26 429-454 118-146 (178)
317 PF11023 DUF2614: Protein of u 22.4 35 0.00076 31.1 0.5 25 430-454 71-95 (114)
318 cd02345 ZZ_dah Zinc finger, ZZ 22.1 39 0.00083 25.9 0.6 30 430-461 2-33 (49)
319 PF15227 zf-C3HC4_4: zinc fing 22.1 15 0.00033 27.1 -1.5 29 431-463 1-29 (42)
320 KOG2845 Activating signal coin 22.0 48 0.001 37.0 1.6 27 427-457 156-183 (505)
321 PF09845 DUF2072: Zn-ribbon co 21.9 45 0.00097 31.1 1.1 24 429-452 2-27 (131)
322 PF03833 PolC_DP2: DNA polymer 21.7 30 0.00066 40.9 0.0 33 442-483 653-689 (900)
323 KOG2462 C2H2-type Zn-finger pr 21.5 32 0.00069 35.7 0.1 25 430-454 217-253 (279)
324 PF09845 DUF2072: Zn-ribbon co 21.3 47 0.001 30.9 1.1 20 445-464 2-31 (131)
325 PF02148 zf-UBP: Zn-finger in 21.3 50 0.0011 26.2 1.2 24 431-457 1-24 (63)
326 PF09947 DUF2180: Uncharacteri 21.2 33 0.00071 28.6 0.1 41 445-485 17-67 (68)
327 cd07153 Fur_like Ferric uptake 21.1 46 0.00099 28.6 1.0 14 447-460 76-89 (116)
328 PRK08329 threonine synthase; V 21.1 54 0.0012 34.3 1.7 22 430-453 3-24 (347)
329 PHA02929 N1R/p28-like protein; 21.1 32 0.00069 34.9 -0.0 35 428-462 174-212 (238)
330 TIGR01384 TFS_arch transcripti 20.5 57 0.0012 28.1 1.5 26 430-455 2-27 (104)
331 PF11781 RRN7: RNA polymerase 20.4 60 0.0013 23.6 1.3 24 430-453 10-34 (36)
332 PLN02195 cellulose synthase A 20.4 53 0.0011 39.5 1.5 50 427-483 5-57 (977)
333 PRK14890 putative Zn-ribbon RN 20.3 72 0.0016 26.0 1.8 26 428-453 7-34 (59)
334 KOG1734 Predicted RING-contain 20.2 46 0.001 34.7 0.9 52 428-485 224-281 (328)
No 1
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=99.76 E-value=2.1e-19 Score=144.07 Aligned_cols=66 Identities=48% Similarity=1.146 Sum_probs=49.1
Q ss_pred CCcccCcCCccccccCccccCccccccccccCceeccCCCCCcEecc--cCCCCCceecccchHHHHH
Q 011140 420 DHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALT--ADANAQPVRVCDRCMVGVI 485 (492)
Q Consensus 420 p~WvpD~~v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp--~~~s~kpvRVC~~Cy~~L~ 485 (492)
|.|++|+++..|+.|+++|+++.||||||.||+|||+.|+..++.++ .....+++|||+.|++.|+
T Consensus 1 ~~W~~d~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~ 68 (69)
T PF01363_consen 1 PHWVPDSEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIPLPTPSSGSGEPVRVCDSCYSKLQ 68 (69)
T ss_dssp --SSSGGG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEEET--GGTESEEEEE-HHHHHHHH
T ss_pred CCcCCCCCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEcccccccCCCCcCEECHHHHHHhc
Confidence 57999999999999999999999999999999999999999999887 5556789999999999885
No 2
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.3e-17 Score=181.18 Aligned_cols=70 Identities=37% Similarity=0.863 Sum_probs=63.9
Q ss_pred CCCCCcccCcCCccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHHHhhh
Q 011140 417 EEKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVIDWLI 489 (492)
Q Consensus 417 e~~p~WvpD~~v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~~r~~ 489 (492)
+..+.|++.+ .|++|.+.|++++||||||+||+|||.+|+.+.++|+..+..++||||+.||+.++....
T Consensus 157 ~~~pdW~D~~---~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~Gi~~~VRVCd~C~E~l~~~s~ 226 (634)
T KOG1818|consen 157 ETAPDWIDSE---ECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKLGIEKPVRVCDSCYELLTRASV 226 (634)
T ss_pred cCCccccccc---ccceeeeeeeeccccccccccchhhccCccccccCcccccccccceehhhhHHHhhhccc
Confidence 4578999855 899999999999999999999999999999999999999999999999999998866443
No 4
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=99.64 E-value=3.2e-17 Score=165.42 Aligned_cols=71 Identities=39% Similarity=0.979 Sum_probs=64.5
Q ss_pred CCCCCCCcccCcCCccccccCc-cccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHHH
Q 011140 415 GNEEKDHWVPDEAVSKCTACGT-DFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVID 486 (492)
Q Consensus 415 ~~e~~p~WvpD~~v~~C~~C~~-~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~~ 486 (492)
....+++|+||.++++||.|.+ .|+++.||||||+||+|||..|+.+++.|+... .+++|||+.||+.|.+
T Consensus 155 ~~~~~~~W~PD~ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~-~k~~rvC~~CF~el~~ 226 (288)
T KOG1729|consen 155 SNNSAAVWLPDSEATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNLS-TKPIRVCDICFEELEK 226 (288)
T ss_pred CCCcCCcccCcccceecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccccccC-CCCceecHHHHHHHhc
Confidence 3456899999999999999998 999999999999999999999999998888764 6899999999999864
No 5
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=99.50 E-value=9.3e-15 Score=159.86 Aligned_cols=67 Identities=31% Similarity=0.754 Sum_probs=53.7
Q ss_pred CCCCcccCcCC-ccccccCccccCc-----cccccccccCceeccCCCCCcEecc-----cCCC---CCceecccchHHH
Q 011140 418 EKDHWVPDEAV-SKCTACGTDFSAF-----VRKHHCRNCGDIFCDKCTHGRIALT-----ADAN---AQPVRVCDRCMVG 483 (492)
Q Consensus 418 ~~p~WvpD~~v-~~C~~C~~~Fs~~-----~RRHHCR~CG~VfC~kCS~~ri~Lp-----~~~s---~kpvRVC~~Cy~~ 483 (492)
..+.|++|+++ +.|+.|++.|+.+ +||||||+||+|||..||.+++.++ ..+. ..+.|||+.||++
T Consensus 449 hAPvWqpDDEaSdtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~yp~aKLpKPgsseE~ppRRVCD~CYdq 528 (1374)
T PTZ00303 449 HNPSWQKDDESSDSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAHYSFAKLAKPGSSDEAEERLVCDTCYKE 528 (1374)
T ss_pred cCCCCCCCcccCCcccCcCCcccccccccccccccccCCccccCccccCCcccCcccccCCCCCcccccccchhHHHHHH
Confidence 57999999984 8899999999754 6999999999999999999876432 2221 1356899999966
Q ss_pred H
Q 011140 484 V 484 (492)
Q Consensus 484 L 484 (492)
+
T Consensus 529 ~ 529 (1374)
T PTZ00303 529 Y 529 (1374)
T ss_pred H
Confidence 5
No 6
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=99.44 E-value=1.8e-14 Score=152.23 Aligned_cols=65 Identities=42% Similarity=1.015 Sum_probs=61.7
Q ss_pred CCCcccCcCCccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceeccc-----chHHH
Q 011140 419 KDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCD-----RCMVG 483 (492)
Q Consensus 419 ~p~WvpD~~v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~-----~Cy~~ 483 (492)
.+.|++|+.+..||.|+..|+.|+||||||+||.|||.+|+...++|+..+..+.+|||+ .|+..
T Consensus 892 ppawipd~~a~~cmacq~pf~afrrrhhcrncggifcg~cs~asapip~~gl~ka~rvcrpqsnldc~~r 961 (990)
T KOG1819|consen 892 PPAWIPDEDAEQCMACQMPFNAFRRRHHCRNCGGIFCGKCSCASAPIPEHGLDKAPRVCRPQSNLDCLTR 961 (990)
T ss_pred CcccCCCCcchhhhhccCcHHHHHHhhhhcccCceeecccccCCCCCcccccccCceecCCcccccceee
Confidence 477999999999999999999999999999999999999999999999999999999999 88754
No 7
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=99.43 E-value=4.8e-14 Score=108.82 Aligned_cols=55 Identities=51% Similarity=1.148 Sum_probs=50.7
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHH
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMV 482 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~ 482 (492)
+..|+.|++.|+++.||||||+||++||..|+..+..++.....+++|||+.|++
T Consensus 2 ~~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~~~~~~~~~~~rvC~~C~~ 56 (57)
T cd00065 2 ASSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIPLPSMGGGKPVRVCDSCYE 56 (57)
T ss_pred cCcCcccCccccCCccccccCcCcCCcChHHcCCeeecCcccCCCccEeChHHhC
Confidence 5689999999999999999999999999999999998887556789999999985
No 8
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=99.35 E-value=6.7e-14 Score=146.39 Aligned_cols=71 Identities=32% Similarity=0.776 Sum_probs=57.6
Q ss_pred CCCcccCcCCccccccCccccCccccccccccCceeccCCCCCcE---e--cc-----------------cCCCCCceec
Q 011140 419 KDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI---A--LT-----------------ADANAQPVRV 476 (492)
Q Consensus 419 ~p~WvpD~~v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri---~--Lp-----------------~~~s~kpvRV 476 (492)
...|++|.+|..|..|..+|++++||||||.||+|+|.+|+.+-- . |. -+....++|+
T Consensus 171 vVpW~DDs~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~iSle~a~~ltsss~~dt~~e~~qq~~~lH~~~~~iRl 250 (505)
T KOG1842|consen 171 VVPWLDDSSVQFCPECANSFGLTRRRHHCRLCGRVMCRDCSKFISLEIAIGLTSSSASDTHFEPNQQKDDLHQHPQPIRL 250 (505)
T ss_pred cccccCCCcccccccccchhhhHHHhhhhhhcchHHHHHHHHhcChHHHHHHhhccCCCCCcCcccCcccccCChhHhHH
Confidence 578999999999999999999999999999999999999987521 0 00 0112345899
Q ss_pred ccchHHHHHHhhh
Q 011140 477 CDRCMVGVIDWLI 489 (492)
Q Consensus 477 C~~Cy~~L~~r~~ 489 (492)
|..|.+.|..|..
T Consensus 251 C~hCl~~L~~R~~ 263 (505)
T KOG1842|consen 251 CMHCLDNLFRRKL 263 (505)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877754
No 9
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.10 E-value=1.4e-11 Score=133.62 Aligned_cols=79 Identities=15% Similarity=0.122 Sum_probs=72.2
Q ss_pred CCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccc-cccceEEEeeccCCchhhHHHHhcCC
Q 011140 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSG-VQKFRVKLLAESGGQSTMDVLCQIGL 307 (492)
Q Consensus 229 ~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~-~gkTpLHlAa~~G~~~iv~vLlq~Ga 307 (492)
.|-+.|||||..+. .+|+|.||..||+||..++ .+.||||+|+++|+..+|++|+|+||
T Consensus 77 ~g~tlLHWAAiNNr--------------------l~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGA 136 (600)
T KOG0509|consen 77 EGVTLLHWAAINNR--------------------LDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGA 136 (600)
T ss_pred CCccceeHHHHcCc--------------------HHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCC
Confidence 67788999999886 9999999999999999974 78999999999999999999999999
Q ss_pred CCCcccCCCCCceeEEeeccc
Q 011140 308 DGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 308 dGv~v~DkngnnaLHIApLe~ 328 (492)
| +.+.|.+|.++||+|+.-.
T Consensus 137 d-pt~~D~~G~~~lHla~~~~ 156 (600)
T KOG0509|consen 137 D-PTLKDKQGLTPLHLAAQFG 156 (600)
T ss_pred C-CceecCCCCcHHHHHHHhC
Confidence 9 8899999999999987653
No 10
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=98.99 E-value=3e-11 Score=93.32 Aligned_cols=55 Identities=15% Similarity=0.133 Sum_probs=33.3
Q ss_pred cccCC-cccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEe
Q 011140 269 VPKVD-THQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (492)
Q Consensus 269 Llkag-A~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIA 324 (492)
||++| +++|.+|..|.||||+|++.|+.++|++|++.|++ +++.|.+|.|+||+|
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d-~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD-PNAKDKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT---TT---TTS--HHHH-
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC-CCCCcCCCCCHHHhC
Confidence 68888 99999999999999999999999999999999999 999999999999986
No 11
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]
Probab=98.96 E-value=1.3e-10 Score=132.01 Aligned_cols=62 Identities=32% Similarity=0.770 Sum_probs=53.5
Q ss_pred CCCCcccCcCCccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccch
Q 011140 418 EKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRC 480 (492)
Q Consensus 418 ~~p~WvpD~~v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~C 480 (492)
..|.|++|.++..||.|..+|++++||||||+||+|+|..|+..+..|..- ...-.|||..|
T Consensus 547 kqP~wvpdse~pncm~clqkft~ikrrhhcRacgkVlcgvccnek~~leyl-~e~~~rv~nV~ 608 (1287)
T KOG1841|consen 547 KQPSWVPDSEAPNCMDCLQKFTPIKRRHHCRACGKVLCGVCCNEKSALEYL-SESEGRVSNVD 608 (1287)
T ss_pred CCCccCccccCchHHHHHhhcccccccccchhccceeehhhcchhhhhhhc-Ccccccccccc
Confidence 368999999999999999999999999999999999999999998877643 23455677666
No 12
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=2.5e-10 Score=109.19 Aligned_cols=70 Identities=14% Similarity=0.183 Sum_probs=59.3
Q ss_pred ccCCCchhhhhhcccC-CcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeecc
Q 011140 257 SVGSGSSKIVRAVPKV-DTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 257 ~~~~G~~~iVr~Llka-gA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe 327 (492)
++..|+.+||+.||-. |+++|.++..|+|+||+|+-+|..+|+++||++|+. +++.|+.+.|+||-|.--
T Consensus 79 a~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~-i~~kD~~~qtplHRAAav 149 (226)
T KOG4412|consen 79 AASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGAL-IRIKDKQGQTPLHRAAAV 149 (226)
T ss_pred hhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCC-CcccccccCchhHHHHhc
Confidence 4455678888888877 999999999999999999999989999999999988 888999999999887543
No 13
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=98.85 E-value=6e-10 Score=121.27 Aligned_cols=101 Identities=12% Similarity=0.085 Sum_probs=61.6
Q ss_pred CCccccccCcCCCCCCCcccccccc--------------------CCcccCCCCcccccccCCCchhhhhhcccCCcccc
Q 011140 218 GGKLEPYGARGTVPKSSNSTLFDDY--------------------GRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQD 277 (492)
Q Consensus 218 ~~~~~~~~~~g~~~~~~~~a~~~d~--------------------~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn 277 (492)
|+.+.--|. -.+.|+|||||+.+. |=..-+ .||..|+..+|-.||..|+++|
T Consensus 101 gadvn~~gG-~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lH-------la~~~~~~~~vayll~~~~d~d 172 (600)
T KOG0509|consen 101 GADVNAIGG-VLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLH-------LAAQFGHTALVAYLLSKGADID 172 (600)
T ss_pred CCCccccCC-CCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHH-------HHHHhCchHHHHHHHHhcccCC
Confidence 455554444 578999999987664 112222 2455555555555555556666
Q ss_pred cccccccceEEEeeccCCchhhHHHHhcCCCCCcccC-CCCCceeEEeecc
Q 011140 278 VKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLD-PNTSRTLRIYPLE 327 (492)
Q Consensus 278 ~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~D-kngnnaLHIApLe 327 (492)
++|..|+||||+||.+|+...++.||+.|++ +.+.| .+|+||||+|.+.
T Consensus 173 ~~D~~grTpLmwAaykg~~~~v~~LL~f~a~-~~~~d~~~g~TpLHwa~~~ 222 (600)
T KOG0509|consen 173 LRDNNGRTPLMWAAYKGFALFVRRLLKFGAS-LLLTDDNHGNTPLHWAVVG 222 (600)
T ss_pred CcCCCCCCHHHHHHHhcccHHHHHHHHhccc-ccccccccCCchHHHHHhc
Confidence 6666666666666666665556666666666 55555 6666666666655
No 14
>PHA02859 ankyrin repeat protein; Provisional
Probab=98.80 E-value=3.9e-10 Score=107.98 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=34.8
Q ss_pred hhhhhhcccCCccccccc-ccccceEEEeecc---CCchhhHHHHhcCCCCCcccCCCCCceeEEe
Q 011140 263 SKIVRAVPKVDTHQDVKS-GVQKFRVKLLAES---GGQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (492)
Q Consensus 263 ~~iVr~LlkagA~vn~kD-~~gkTpLHlAa~~---G~~~iv~vLlq~GadGv~v~DkngnnaLHIA 324 (492)
.+||++||++||++|.++ ..|+||||+|+.. ++.+++.+|++.|++ ++..|..|.|+||+|
T Consensus 66 ~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gad-in~~d~~G~TpLh~a 130 (209)
T PHA02859 66 VEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSS-ITEEDEDGKNLLHMY 130 (209)
T ss_pred HHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCC-CCCcCCCCCCHHHHH
Confidence 556666666666666554 3556666655432 234556666666666 555666666666654
No 15
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=2.3e-09 Score=102.64 Aligned_cols=71 Identities=15% Similarity=0.160 Sum_probs=65.2
Q ss_pred ccCCCchhhhhhcc-cCCcccccccccccceEEEeeccCCchhhHHHHhc-CCCCCcccCCCCCceeEEeeccc
Q 011140 257 SVGSGSSKIVRAVP-KVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQI-GLDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 257 ~~~~G~~~iVr~Ll-kagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~-GadGv~v~DkngnnaLHIApLe~ 328 (492)
++.-|+.+||..|+ ..+..+|.+|-.|+||||||+-.|..++|++|+.. |+| ++++...|.|+||.|+-+.
T Consensus 45 a~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~ad-vna~tn~G~T~LHyAagK~ 117 (226)
T KOG4412|consen 45 ACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGAD-VNATTNGGQTCLHYAAGKG 117 (226)
T ss_pred eeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCC-cceecCCCcceehhhhcCC
Confidence 44556899999999 88889999999999999999999999999999999 999 9999999999999997774
No 16
>PHA02878 ankyrin repeat protein; Provisional
Probab=98.76 E-value=1.1e-09 Score=116.00 Aligned_cols=76 Identities=7% Similarity=0.036 Sum_probs=62.8
Q ss_pred CCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCC
Q 011140 230 VPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDG 309 (492)
Q Consensus 230 ~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadG 309 (492)
|.|+||+|+..+ +.++|+.|++.||++|.+|..|+||||+|++.|+.++++.|++.|++
T Consensus 168 g~tpLh~A~~~~--------------------~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~- 226 (477)
T PHA02878 168 GNTALHYATENK--------------------DQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAS- 226 (477)
T ss_pred CCCHHHHHHhCC--------------------CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC-
Confidence 788899876554 47888888888888888888888888888888888888888888888
Q ss_pred CcccCCCCCceeEEeec
Q 011140 310 IRMLDPNTSRTLRIYPL 326 (492)
Q Consensus 310 v~v~DkngnnaLHIApL 326 (492)
++..|..|.|+||+|..
T Consensus 227 in~~d~~g~TpLh~A~~ 243 (477)
T PHA02878 227 TDARDKCGNTPLHISVG 243 (477)
T ss_pred CCCCCCCCCCHHHHHHH
Confidence 88888888888888763
No 17
>PHA02736 Viral ankyrin protein; Provisional
Probab=98.74 E-value=1.4e-09 Score=98.15 Aligned_cols=63 Identities=8% Similarity=0.084 Sum_probs=57.3
Q ss_pred hhhhhcccCCccccccc-ccccceEEEeeccCCchhhHHHHh-cCCCCCcccCCCCCceeEEeecc
Q 011140 264 KIVRAVPKVDTHQDVKS-GVQKFRVKLLAESGGQSTMDVLCQ-IGLDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 264 ~iVr~LlkagA~vn~kD-~~gkTpLHlAa~~G~~~iv~vLlq-~GadGv~v~DkngnnaLHIApLe 327 (492)
++|++|+..|+++|.+| ..|+|+||+|++.|+.++++.|++ .|++ +++.|..|.|+||+|...
T Consensus 72 e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d-~n~~~~~g~tpL~~A~~~ 136 (154)
T PHA02736 72 EKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVN-MEILNYAFKTPYYVACER 136 (154)
T ss_pred HHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC-CccccCCCCCHHHHHHHc
Confidence 57899999999999998 589999999999999999999997 5999 889999999999998543
No 18
>PHA02743 Viral ankyrin protein; Provisional
Probab=98.74 E-value=1.1e-09 Score=101.30 Aligned_cols=81 Identities=9% Similarity=0.182 Sum_probs=66.2
Q ss_pred CCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCccccccc-ccccceEEEeeccCCchhhHHHHh-cC
Q 011140 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKS-GVQKFRVKLLAESGGQSTMDVLCQ-IG 306 (492)
Q Consensus 229 ~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD-~~gkTpLHlAa~~G~~~iv~vLlq-~G 306 (492)
.|.|+||||+..+. .+..++|+.|+..||++|.+| ..|+|+||+|+..|+.++++.|++ .|
T Consensus 56 ~g~t~Lh~Aa~~g~-----------------~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~g 118 (166)
T PHA02743 56 HGRQCTHMVAWYDR-----------------ANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLG 118 (166)
T ss_pred CCCcHHHHHHHhCc-----------------cCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccC
Confidence 56888999886553 011356899999999999998 589999999999999999999994 89
Q ss_pred CCCCcccCCCCCceeEEeecc
Q 011140 307 LDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 307 adGv~v~DkngnnaLHIApLe 327 (492)
++ ++..|..|.++||+|...
T Consensus 119 ad-~~~~d~~g~tpL~~A~~~ 138 (166)
T PHA02743 119 VN-LGAINYQHETAYHIAYKM 138 (166)
T ss_pred CC-ccCcCCCCCCHHHHHHHc
Confidence 99 888999999999998544
No 19
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.72 E-value=4.9e-09 Score=111.45 Aligned_cols=77 Identities=13% Similarity=0.125 Sum_probs=57.5
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Ga 307 (492)
-|++|+|.-|.||+- .+||+.|+++|||.++.|.+|.|=||||+.+||.+|++.|++.||
T Consensus 115 ~TNStPLraACfDG~--------------------leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gA 174 (615)
T KOG0508|consen 115 RTNSTPLRAACFDGH--------------------LEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGA 174 (615)
T ss_pred ccCCccHHHHHhcch--------------------hHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCC
Confidence 366777777888763 677777777777777777777777777777777777777777777
Q ss_pred CCCcccCCCCCceeEEee
Q 011140 308 DGIRMLDPNTSRTLRIYP 325 (492)
Q Consensus 308 dGv~v~DkngnnaLHIAp 325 (492)
| ++..+.+|||+||.+.
T Consensus 175 D-vn~ks~kGNTALH~ca 191 (615)
T KOG0508|consen 175 D-VNAKSYKGNTALHDCA 191 (615)
T ss_pred C-cchhcccCchHHHhhh
Confidence 7 7777777777777764
No 20
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=98.70 E-value=3.8e-09 Score=107.03 Aligned_cols=79 Identities=11% Similarity=0.042 Sum_probs=72.3
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Ga 307 (492)
.+|-.+|||||. .|+..||+.||..||+||..+.---|+|||||-.||-+||..|++..+
T Consensus 32 dhgfsplhwaak--------------------egh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~ka 91 (448)
T KOG0195|consen 32 DHGFSPLHWAAK--------------------EGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKA 91 (448)
T ss_pred ccCcchhhhhhh--------------------cccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhc
Confidence 456788999654 456999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeEEeecc
Q 011140 308 DGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 308 dGv~v~DkngnnaLHIApLe 327 (492)
| +++++.+|+++||.|.+=
T Consensus 92 d-vnavnehgntplhyacfw 110 (448)
T KOG0195|consen 92 D-VNAVNEHGNTPLHYACFW 110 (448)
T ss_pred c-cchhhccCCCchhhhhhh
Confidence 9 999999999999999765
No 21
>PHA02791 ankyrin-like protein; Provisional
Probab=98.69 E-value=2e-09 Score=108.83 Aligned_cols=70 Identities=10% Similarity=0.062 Sum_probs=57.8
Q ss_pred cCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCC-ceeEEeeccc
Q 011140 258 VGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTS-RTLRIYPLEN 328 (492)
Q Consensus 258 ~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~Dkngn-naLHIApLe~ 328 (492)
+..|+.+||+.|+..|+++|.+|..|+||||+|++.|+.++++.|++.|++ ++..|..|. ++||+|....
T Consensus 69 a~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gad-in~~~~~g~~TpL~~Aa~~g 139 (284)
T PHA02791 69 ATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLN 139 (284)
T ss_pred HHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccCCCCCcHHHHHHHHcC
Confidence 344558899999999999998888999999999999988999999999988 777787774 7888887653
No 22
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=98.68 E-value=1.8e-09 Score=88.23 Aligned_cols=64 Identities=19% Similarity=0.262 Sum_probs=38.1
Q ss_pred CCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeecc
Q 011140 259 GSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 259 ~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe 327 (492)
..|+.++|+.|++.+++++. |+|+||+|++.|+.++++.|++.|++ ++..|.+|.|+||+|...
T Consensus 6 ~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 69 (89)
T PF12796_consen 6 QNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGAD-INSQDKNGNTALHYAAEN 69 (89)
T ss_dssp HTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTC-TT-BSTTSSBHHHHHHHT
T ss_pred HcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhccc-ccccCCCCCCHHHHHHHc
Confidence 33446666666666655554 55666666666666666666666666 556666666666666554
No 23
>PHA02875 ankyrin repeat protein; Provisional
Probab=98.68 E-value=2.2e-09 Score=110.81 Aligned_cols=67 Identities=12% Similarity=0.049 Sum_probs=48.0
Q ss_pred CCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeecc
Q 011140 260 SGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 260 ~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe 327 (492)
.|+.++|+.|+++||++|.++..|.||||+|++.|+.++++.|++.|++ +++.|..|.|+||+|...
T Consensus 112 ~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~TpL~~A~~~ 178 (413)
T PHA02875 112 LKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKAC-LDIEDCCGCTPLIIAMAK 178 (413)
T ss_pred hCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHc
Confidence 3446777777777777777777777777777777777777777777777 667777777777777655
No 24
>PHA02859 ankyrin repeat protein; Provisional
Probab=98.68 E-value=2.3e-09 Score=102.63 Aligned_cols=79 Identities=10% Similarity=0.041 Sum_probs=58.8
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeec--cCCchhhHHHHhc
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAE--SGGQSTMDVLCQI 305 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~--~G~~~iv~vLlq~ 305 (492)
..|.|+||+|+...- .++.+||++|+++||++|.+|..|+||||+|+. .++.++++.|++.
T Consensus 85 ~~g~TpLh~a~~~~~-----------------~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~ 147 (209)
T PHA02859 85 DNNLSALHHYLSFNK-----------------NVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDS 147 (209)
T ss_pred CCCCCHHHHHHHhCc-----------------cccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHc
Confidence 467889998774321 124678888888888888888888888887765 3566788888888
Q ss_pred CCCCCcccCCCCCceeEEe
Q 011140 306 GLDGIRMLDPNTSRTLRIY 324 (492)
Q Consensus 306 GadGv~v~DkngnnaLHIA 324 (492)
|++ ++..|.+|+|+||++
T Consensus 148 gad-in~~d~~g~t~Lh~~ 165 (209)
T PHA02859 148 GVS-FLNKDFDNNNILYSY 165 (209)
T ss_pred CCC-cccccCCCCcHHHHH
Confidence 888 777888888888864
No 25
>PHA02791 ankyrin-like protein; Provisional
Probab=98.67 E-value=2.5e-09 Score=108.09 Aligned_cols=78 Identities=12% Similarity=0.103 Sum_probs=70.1
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Ga 307 (492)
..|.|+||+|+..+. .++|+.||.+|+++|.++ ++||||+|++.|+.++|+.|++.|+
T Consensus 28 ~~G~TpLh~Aa~~g~--------------------~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Ga 85 (284)
T PHA02791 28 VHGHSALYYAIADNN--------------------VRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGM 85 (284)
T ss_pred CCCCcHHHHHHHcCC--------------------HHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCC
Confidence 457889999776554 999999999999999876 6899999999999999999999999
Q ss_pred CCCcccCCCCCceeEEeeccc
Q 011140 308 DGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 308 dGv~v~DkngnnaLHIApLe~ 328 (492)
+ ++..|..|+|+||+|....
T Consensus 86 d-vn~~d~~G~TpLh~Aa~~g 105 (284)
T PHA02791 86 D-DSQFDDKGNTALYYAVDSG 105 (284)
T ss_pred C-CCCCCCCCCCHHHHHHHcC
Confidence 9 9999999999999997764
No 26
>PHA02741 hypothetical protein; Provisional
Probab=98.67 E-value=2.4e-09 Score=98.81 Aligned_cols=64 Identities=11% Similarity=0.222 Sum_probs=57.2
Q ss_pred hhhhhhcccCCcccccccc-cccceEEEeeccCCchhhHHHHh-cCCCCCcccCCCCCceeEEeecc
Q 011140 263 SKIVRAVPKVDTHQDVKSG-VQKFRVKLLAESGGQSTMDVLCQ-IGLDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 263 ~~iVr~LlkagA~vn~kD~-~gkTpLHlAa~~G~~~iv~vLlq-~GadGv~v~DkngnnaLHIApLe 327 (492)
.+|++.|+..|+++|.+|. .|+||||+|++.++.++++.|+. .|++ +++.|.+|.|+||+|...
T Consensus 77 ~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~-~~~~n~~g~tpL~~A~~~ 142 (169)
T PHA02741 77 AEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGID-LHFCNADNKSPFELAIDN 142 (169)
T ss_pred HHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCCHHHHHHHC
Confidence 5889999999999999985 89999999999999999999997 5998 889999999999998443
No 27
>PHA02884 ankyrin repeat protein; Provisional
Probab=98.66 E-value=2.9e-09 Score=108.64 Aligned_cols=77 Identities=8% Similarity=0.096 Sum_probs=68.2
Q ss_pred CCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccc-cccccceEEEeeccCCchhhHHHHhcCC
Q 011140 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVK-SGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (492)
Q Consensus 229 ~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~k-D~~gkTpLHlAa~~G~~~iv~vLlq~Ga 307 (492)
.|.|+||+|+..+ +.++|+.|+++||++|.+ +..|.||||+|+..|+.++++.|+..|+
T Consensus 69 ~g~TpLh~Aa~~~--------------------~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GA 128 (300)
T PHA02884 69 SKTNPLIYAIDCD--------------------NDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGA 128 (300)
T ss_pred CCCCHHHHHHHcC--------------------CHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 4678899876555 489999999999999987 4689999999999999999999999999
Q ss_pred CCCcccCCCCCceeEEeec
Q 011140 308 DGIRMLDPNTSRTLRIYPL 326 (492)
Q Consensus 308 dGv~v~DkngnnaLHIApL 326 (492)
+ ++..|..|.|+||+|..
T Consensus 129 d-in~kd~~G~TpL~~A~~ 146 (300)
T PHA02884 129 D-INIQTNDMVTPIELALM 146 (300)
T ss_pred C-CCCCCCCCCCHHHHHHH
Confidence 9 88999999999999854
No 28
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=98.66 E-value=4.5e-09 Score=121.88 Aligned_cols=72 Identities=15% Similarity=0.168 Sum_probs=67.9
Q ss_pred cccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeeccc
Q 011140 256 SSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 256 ~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe~ 328 (492)
.|+..|+.++|+.||+.||+++.+|..|+||||.|+..|+.+|+.+|+++||+ +++.|.++.|+||||....
T Consensus 546 ~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~-vna~d~~g~TpL~iA~~lg 617 (1143)
T KOG4177|consen 546 VAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGAS-VNAADLDGFTPLHIAVRLG 617 (1143)
T ss_pred HHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCC-CCcccccCcchhHHHHHhc
Confidence 36778889999999999999999999999999999999999999999999999 9999999999999996653
No 29
>PHA02989 ankyrin repeat protein; Provisional
Probab=98.66 E-value=3.7e-09 Score=112.72 Aligned_cols=84 Identities=13% Similarity=0.159 Sum_probs=62.6
Q ss_pred cCCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeecc---CCchhhHHHH
Q 011140 227 RGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAES---GGQSTMDVLC 303 (492)
Q Consensus 227 ~g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~---G~~~iv~vLl 303 (492)
++.+.|+||+|+.... .+..|..+||++||++||++|.+|..|.||||.|+.. |+.++++.|+
T Consensus 66 ~~~~~tpL~~a~~~~~--------------~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll 131 (494)
T PHA02989 66 KGYIETPLCAVLRNRE--------------ITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLL 131 (494)
T ss_pred CCCCCCcHHHHHhccC--------------cchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHH
Confidence 3456799998765433 1224567888888888888888888888888876544 5567888888
Q ss_pred hcCCCCC-cccCCCCCceeEEee
Q 011140 304 QIGLDGI-RMLDPNTSRTLRIYP 325 (492)
Q Consensus 304 q~GadGv-~v~DkngnnaLHIAp 325 (492)
+.||+ + ++.|..|.|+||+|.
T Consensus 132 ~~Gad-in~~~d~~g~tpLh~a~ 153 (494)
T PHA02989 132 SKGIN-VNDVKNSRGYNLLHMYL 153 (494)
T ss_pred HCCCC-cccccCCCCCCHHHHHH
Confidence 88888 7 678888888888764
No 30
>PHA03095 ankyrin-like protein; Provisional
Probab=98.64 E-value=4.5e-09 Score=109.62 Aligned_cols=65 Identities=12% Similarity=0.145 Sum_probs=59.6
Q ss_pred hhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeeccc
Q 011140 263 SKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 263 ~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe~ 328 (492)
..+|+.|++.|+++|.+|..|+||||+|++.|+.++++.|++.||+ +++.|.+|.|+||+|....
T Consensus 237 ~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad-~n~~~~~g~tpl~~A~~~~ 301 (471)
T PHA03095 237 RSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGAD-INAVSSDGNTPLSLMVRNN 301 (471)
T ss_pred HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhC
Confidence 4688899999999999999999999999999999999999999999 8899999999999986653
No 31
>PHA02795 ankyrin-like protein; Provisional
Probab=98.63 E-value=4.2e-09 Score=112.39 Aligned_cols=70 Identities=9% Similarity=-0.064 Sum_probs=65.5
Q ss_pred cCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeeccc
Q 011140 258 VGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 258 ~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe~ 328 (492)
+..++.+||+.|+.+||++|.+|..|+||||+|++.|+.++++.|++.||+ +++.|..|.|+||+|....
T Consensus 196 ~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAd-IN~~d~~G~TpLh~Aa~~g 265 (437)
T PHA02795 196 DEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGAN-VNAVMSNGYTCLDVAVDRG 265 (437)
T ss_pred HhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcC
Confidence 344568999999999999999999999999999999999999999999999 9999999999999997765
No 32
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.63 E-value=4.9e-09 Score=116.83 Aligned_cols=103 Identities=16% Similarity=0.060 Sum_probs=84.8
Q ss_pred CCCCCCCcccccccc----------CCcccCCCCcccc---cccCCCchhhhhhccc-CCc-ccccccccccceEEEeec
Q 011140 228 GTVPKSSNSTLFDDY----------GRSISFPSAKDSR---SSVGSGSSKIVRAVPK-VDT-HQDVKSGVQKFRVKLLAE 292 (492)
Q Consensus 228 g~~~~~~~~a~~~d~----------~~~i~~~s~~~~~---~~~~~G~~~iVr~Llk-agA-~vn~kD~~gkTpLHlAa~ 292 (492)
-+|.|+||.||.+++ |-+|..-+..+-+ -||..|....||.||+ .|. ..|.+|..|.||||+|++
T Consensus 271 ~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~ 350 (929)
T KOG0510|consen 271 NDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAK 350 (929)
T ss_pred ccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhh
Confidence 357899999998875 6677777654422 4788899999999998 444 678899999999999999
Q ss_pred cCCchhhHHHHhcCCCCCc--ccCCCCCceeEEeeccccc
Q 011140 293 SGGQSTMDVLCQIGLDGIR--MLDPNTSRTLRIYPLENIT 330 (492)
Q Consensus 293 ~G~~~iv~vLlq~GadGv~--v~DkngnnaLHIApLe~It 330 (492)
+||..+|++|++.||+-.+ -.|..|+|+||+|.++..+
T Consensus 351 ~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~ 390 (929)
T KOG0510|consen 351 SGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNT 390 (929)
T ss_pred cCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccH
Confidence 9999999999999999333 3499999999999999643
No 33
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=98.61 E-value=2.8e-09 Score=87.08 Aligned_cols=56 Identities=16% Similarity=0.265 Sum_probs=50.3
Q ss_pred ccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCccc
Q 011140 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRML 313 (492)
Q Consensus 257 ~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~ 313 (492)
|+..|+.+||+.|+..|+++|.+|..|+|+||+|++.|+.++++.|++.|++ ++..
T Consensus 33 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~ 88 (89)
T PF12796_consen 33 AAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLLLEHGAD-VNIR 88 (89)
T ss_dssp HHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT--TTSS
T ss_pred HHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCc
Confidence 6677889999999999999999999999999999999999999999999999 6554
No 34
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=98.60 E-value=9.3e-09 Score=98.09 Aligned_cols=76 Identities=11% Similarity=0.059 Sum_probs=56.6
Q ss_pred CCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCC
Q 011140 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (492)
Q Consensus 229 ~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Gad 308 (492)
++.|+||-|||.++ .+||+.||..||+++.+...|+||||-|+.=.+.+++..||+.|+|
T Consensus 96 D~YTpLHRAaYn~h--------------------~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaD 155 (228)
T KOG0512|consen 96 DEYTPLHRAAYNGH--------------------LDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGAD 155 (228)
T ss_pred ccccHHHHHHhcCc--------------------hHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHHhccCc
Confidence 45667777666665 7777777777777777777777777777777777777777777777
Q ss_pred CCcccCCCCCceeEEee
Q 011140 309 GIRMLDPNTSRTLRIYP 325 (492)
Q Consensus 309 Gv~v~DkngnnaLHIAp 325 (492)
|++..+-..|+||+++
T Consensus 156 -VnA~t~g~ltpLhlaa 171 (228)
T KOG0512|consen 156 -VNAQTKGLLTPLHLAA 171 (228)
T ss_pred -ccccccccchhhHHhh
Confidence 7777777777777763
No 35
>PHA02946 ankyin-like protein; Provisional
Probab=98.59 E-value=8.4e-09 Score=109.74 Aligned_cols=65 Identities=9% Similarity=0.094 Sum_probs=60.7
Q ss_pred CchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeec
Q 011140 261 GSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPL 326 (492)
Q Consensus 261 G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApL 326 (492)
++.+||+.||..|+++|.+|..|+||||+|++.|+.++|++|+++||+ +++.|.+|.|+||+|..
T Consensus 50 ~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAd-in~~d~~g~TpLh~A~~ 114 (446)
T PHA02946 50 LDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGAD-PNACDKQHKTPLYYLSG 114 (446)
T ss_pred CCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHH
Confidence 468899999999999999999999999999999999999999999999 89999999999998753
No 36
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.58 E-value=1.1e-08 Score=105.24 Aligned_cols=70 Identities=33% Similarity=0.756 Sum_probs=59.2
Q ss_pred CCCCCCCCcccCcCCccccccCccccCc-----------cccccccccCceeccCCCCCcEecccCCCCCceecccchHH
Q 011140 414 PGNEEKDHWVPDEAVSKCTACGTDFSAF-----------VRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMV 482 (492)
Q Consensus 414 p~~e~~p~WvpD~~v~~C~~C~~~Fs~~-----------~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~ 482 (492)
-...+.+.|+.+. .|..|...|... .|.||||+||..||..|++++...+..+..-.+|+|+.||.
T Consensus 271 ~~r~etpewl~s~---~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~ 347 (404)
T KOG1409|consen 271 VKRVETPEWLDSD---SCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYP 347 (404)
T ss_pred ceeecCccccccc---hhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccch
Confidence 3445689999876 899999887531 48999999999999999999998887777789999999999
Q ss_pred HHHH
Q 011140 483 GVID 486 (492)
Q Consensus 483 ~L~~ 486 (492)
.|+.
T Consensus 348 ~i~~ 351 (404)
T KOG1409|consen 348 TIKD 351 (404)
T ss_pred hhhc
Confidence 9854
No 37
>PHA03095 ankyrin-like protein; Provisional
Probab=98.57 E-value=7.7e-09 Score=107.85 Aligned_cols=79 Identities=14% Similarity=0.118 Sum_probs=64.8
Q ss_pred CCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccC-CchhhHHHHhcCC
Q 011140 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESG-GQSTMDVLCQIGL 307 (492)
Q Consensus 229 ~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G-~~~iv~vLlq~Ga 307 (492)
.|.|+||+|+.... .+..++|+.|++.||++|.+|..|+||||+|++.| ..+++++|++.|+
T Consensus 46 ~g~t~Lh~a~~~~~-----------------~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga 108 (471)
T PHA03095 46 YGKTPLHLYLHYSS-----------------EKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGA 108 (471)
T ss_pred CCCCHHHHHHHhcC-----------------CChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCC
Confidence 46789998775541 12588888999999999988888899999998888 4788888999998
Q ss_pred CCCcccCCCCCceeEEee
Q 011140 308 DGIRMLDPNTSRTLRIYP 325 (492)
Q Consensus 308 dGv~v~DkngnnaLHIAp 325 (492)
+ ++..|.+|+|+||+|.
T Consensus 109 ~-in~~~~~g~tpLh~a~ 125 (471)
T PHA03095 109 D-VNAKDKVGRTPLHVYL 125 (471)
T ss_pred C-CCCCCCCCCCHHHHHh
Confidence 8 8888888888888886
No 38
>PHA02874 ankyrin repeat protein; Provisional
Probab=98.57 E-value=7.7e-09 Score=108.12 Aligned_cols=79 Identities=6% Similarity=0.045 Sum_probs=46.7
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Ga 307 (492)
..|.|+||+|+..+ +.++|+.|++.|+++|.+|..|+||||+|++.|+.+++++|++.|+
T Consensus 122 ~~g~T~Lh~A~~~~--------------------~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~ 181 (434)
T PHA02874 122 AELKTFLHYAIKKG--------------------DLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGA 181 (434)
T ss_pred CCCccHHHHHHHCC--------------------CHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCC
Confidence 45678899877553 3555555555555555555555555555555555555555555555
Q ss_pred CCCcccCCCCCceeEEeecc
Q 011140 308 DGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 308 dGv~v~DkngnnaLHIApLe 327 (492)
+ +++.|.+|.|+||+|...
T Consensus 182 ~-~n~~~~~g~tpL~~A~~~ 200 (434)
T PHA02874 182 Y-ANVKDNNGESPLHNAAEY 200 (434)
T ss_pred C-CCCCCCCCCCHHHHHHHc
Confidence 5 555555555555555443
No 39
>PHA02741 hypothetical protein; Provisional
Probab=98.56 E-value=6.3e-09 Score=95.98 Aligned_cols=70 Identities=14% Similarity=0.213 Sum_probs=59.3
Q ss_pred cCCCchhhhhhcc------cCCcccccccccccceEEEeeccCC----chhhHHHHhcCCCCCcccCC-CCCceeEEeec
Q 011140 258 VGSGSSKIVRAVP------KVDTHQDVKSGVQKFRVKLLAESGG----QSTMDVLCQIGLDGIRMLDP-NTSRTLRIYPL 326 (492)
Q Consensus 258 ~~~G~~~iVr~Ll------kagA~vn~kD~~gkTpLHlAa~~G~----~~iv~vLlq~GadGv~v~Dk-ngnnaLHIApL 326 (492)
+..|+.++|+.|+ ..|+++|.+|..|+|+||+|++.|+ .++++.|++.|++ ++..|. +|+|+||+|..
T Consensus 29 a~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad-in~~~~~~g~TpLh~A~~ 107 (169)
T PHA02741 29 ARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD-INAQEMLEGDTALHLAAH 107 (169)
T ss_pred HHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC-CCCCCcCCCCCHHHHHHH
Confidence 3344589999874 3579999999999999999999998 4789999999999 888885 99999999976
Q ss_pred cc
Q 011140 327 EN 328 (492)
Q Consensus 327 e~ 328 (492)
..
T Consensus 108 ~~ 109 (169)
T PHA02741 108 RR 109 (169)
T ss_pred cC
Confidence 54
No 40
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.54 E-value=1.5e-08 Score=107.84 Aligned_cols=86 Identities=15% Similarity=0.094 Sum_probs=77.6
Q ss_pred cccccCcCCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhH
Q 011140 221 LEPYGARGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMD 300 (492)
Q Consensus 221 ~~~~~~~g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~ 300 (492)
.+|==+--.|-|-||+|++++ +.+|++.|++.|||+|.++-.|+|+||.++|.|+.+|++
T Consensus 141 ad~~IanrhGhTcLmIa~ykG--------------------h~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq 200 (615)
T KOG0508|consen 141 ADPEIANRHGHTCLMIACYKG--------------------HVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQ 200 (615)
T ss_pred CCCcccccCCCeeEEeeeccC--------------------chHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHH
Confidence 356666778889999988876 499999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCcccCCCCCceeEEeeccc
Q 011140 301 VLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 301 vLlq~GadGv~v~DkngnnaLHIApLe~ 328 (492)
+|+++|+. +++|.+|.|+|..|.+..
T Consensus 201 ~Ll~~ga~--i~~d~~GmtPL~~Aa~tG 226 (615)
T KOG0508|consen 201 LLLKHGAK--IDVDGHGMTPLLLAAVTG 226 (615)
T ss_pred HHHhCCce--eeecCCCCchHHHHhhhc
Confidence 99999998 478999999999998774
No 41
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=98.53 E-value=1.3e-08 Score=114.91 Aligned_cols=64 Identities=13% Similarity=0.110 Sum_probs=59.9
Q ss_pred CchhhhhhcccCCcccccccccccceEEEeeccCCc--hhhHHHHhcCCCCCcccCCCCCceeEEee
Q 011140 261 GSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQ--STMDVLCQIGLDGIRMLDPNTSRTLRIYP 325 (492)
Q Consensus 261 G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~--~iv~vLlq~GadGv~v~DkngnnaLHIAp 325 (492)
++.++|+.|++.||++|.+|..|+||||+|++.|+. ++|+.|++.||+ +++.|.+|.|+||.|.
T Consensus 190 ~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GAD-VN~kD~~G~TPLh~Ai 255 (764)
T PHA02716 190 VDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGD-MDMKCVNGMSPIMTYI 255 (764)
T ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH
Confidence 468999999999999999999999999999999964 799999999999 9999999999999764
No 42
>PHA02874 ankyrin repeat protein; Provisional
Probab=98.53 E-value=1.1e-08 Score=107.01 Aligned_cols=80 Identities=15% Similarity=0.060 Sum_probs=70.8
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Ga 307 (492)
..|.|+||+|+..+ +.++|+.|++.|+++|.+|..|+||||+|++.|+.++++.|++.|+
T Consensus 155 ~~g~tpLh~A~~~~--------------------~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~ 214 (434)
T PHA02874 155 DNGCYPIHIAIKHN--------------------FFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGN 214 (434)
T ss_pred CCCCCHHHHHHHCC--------------------cHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 45778899877654 4899999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeEEeeccc
Q 011140 308 DGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 308 dGv~v~DkngnnaLHIApLe~ 328 (492)
+ +...+..|.|+||+|....
T Consensus 215 ~-i~~~~~~g~TpL~~A~~~~ 234 (434)
T PHA02874 215 H-IMNKCKNGFTPLHNAIIHN 234 (434)
T ss_pred C-CcCCCCCCCCHHHHHHHCC
Confidence 9 8888999999999987654
No 43
>PHA02798 ankyrin-like protein; Provisional
Probab=98.52 E-value=1.3e-08 Score=108.30 Aligned_cols=87 Identities=15% Similarity=0.143 Sum_probs=64.8
Q ss_pred cCcCCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccC---CchhhHH
Q 011140 225 GARGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESG---GQSTMDV 301 (492)
Q Consensus 225 ~~~g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G---~~~iv~v 301 (492)
...+.|.|+||+|+-. . ....+..+||+.|+++||++|.+|..|+||||+|+..+ +.++++.
T Consensus 66 ~~d~~g~TpL~~~~~n-~--------------~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~ 130 (489)
T PHA02798 66 GLDNEYSTPLCTILSN-I--------------KDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLF 130 (489)
T ss_pred CCCCCCCChHHHHHHh-H--------------HhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHH
Confidence 3346778888886532 0 00123478888888888888888888888888888775 4578888
Q ss_pred HHhcCCCCCcccCCCCCceeEEeecc
Q 011140 302 LCQIGLDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 302 Llq~GadGv~v~DkngnnaLHIApLe 327 (492)
|++.|++ +++.|.+|.|+||+|...
T Consensus 131 Ll~~Gad-vn~~d~~g~tpL~~a~~~ 155 (489)
T PHA02798 131 MIENGAD-TTLLDKDGFTMLQVYLQS 155 (489)
T ss_pred HHHcCCC-ccccCCCCCcHHHHHHHc
Confidence 8888888 888888888888887554
No 44
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.50 E-value=1.5e-08 Score=115.00 Aligned_cols=71 Identities=14% Similarity=0.149 Sum_probs=58.8
Q ss_pred ccCCCchhhhhhcccCCcccccccccccceEEEeeccCC-------------------------------chhhHHHHhc
Q 011140 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGG-------------------------------QSTMDVLCQI 305 (492)
Q Consensus 257 ~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~-------------------------------~~iv~vLlq~ 305 (492)
|+..|+.++|+.|+.+|+++|.+|..|+||||+|++.|+ .++++.|+++
T Consensus 565 Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~ 644 (823)
T PLN03192 565 AASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQ 644 (823)
T ss_pred HHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHC
Confidence 444556999999999999999999999999886655554 4556668889
Q ss_pred CCCCCcccCCCCCceeEEeeccc
Q 011140 306 GLDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 306 GadGv~v~DkngnnaLHIApLe~ 328 (492)
|++ +++.|.+|.|+||+|..+.
T Consensus 645 Gad-in~~d~~G~TpLh~A~~~g 666 (823)
T PLN03192 645 GLN-VDSEDHQGATALQVAMAED 666 (823)
T ss_pred CCC-CCCCCCCCCCHHHHHHHCC
Confidence 999 8999999999999997664
No 45
>KOG1843 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=2.5e-08 Score=104.42 Aligned_cols=67 Identities=19% Similarity=0.208 Sum_probs=56.7
Q ss_pred CCCCcccCcCCccccccCccccCc-cccccccccCceeccCCCCCcEecccC-CCCCceecccchHHHH
Q 011140 418 EKDHWVPDEAVSKCTACGTDFSAF-VRKHHCRNCGDIFCDKCTHGRIALTAD-ANAQPVRVCDRCMVGV 484 (492)
Q Consensus 418 ~~p~WvpD~~v~~C~~C~~~Fs~~-~RRHHCR~CG~VfC~kCS~~ri~Lp~~-~s~kpvRVC~~Cy~~L 484 (492)
+.+.|..++....||.|+..|+.+ .||||||.|+.+||..|+..+-.++.. ....+.|||+.|+..|
T Consensus 150 ~ap~f~yskskglfagvSvegsaI~erR~anR~~yg~~cra~~ilsg~vp~p~a~d~l~RVldS~~~nl 218 (473)
T KOG1843|consen 150 EAPVFLYSKSKGLFAGVSVEGSAIIERREANRKFYGIFCRAKSILSGLVPVPFAADPLQRVLDSCAFNL 218 (473)
T ss_pred cCccccccccccceeeeecccceeeecchhhhhhcCccchhhhhhccCCCCCcccCCHHHHHhhHhhcc
Confidence 478999999999999999999954 699999999999999999876554432 2345789999999887
No 46
>PHA02875 ankyrin repeat protein; Provisional
Probab=98.49 E-value=2.1e-08 Score=103.64 Aligned_cols=70 Identities=14% Similarity=0.102 Sum_probs=63.2
Q ss_pred ccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCC-ceeEEeecc
Q 011140 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTS-RTLRIYPLE 327 (492)
Q Consensus 257 ~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~Dkngn-naLHIApLe 327 (492)
|+..|+.++|+.|+++|+++|.+|..|+||||+|+..|+.++++.|++.|++ ++..+.+|. ++||+|...
T Consensus 142 A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~-~n~~~~~~~~t~l~~A~~~ 212 (413)
T PHA02875 142 AVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGAN-IDYFGKNGCVAALCYAIEN 212 (413)
T ss_pred HHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCcCCCCCCchHHHHHHHc
Confidence 5667789999999999999999999999999999999999999999999999 888888886 567767554
No 47
>PHA02946 ankyin-like protein; Provisional
Probab=98.49 E-value=1.7e-08 Score=107.50 Aligned_cols=65 Identities=6% Similarity=0.058 Sum_probs=54.2
Q ss_pred CchhhhhhcccCCcccccccccccceEEEeeccC--CchhhHHHHhcCCCCCcccCCCCCceeEEeecc
Q 011140 261 GSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESG--GQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 261 G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G--~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe 327 (492)
++.++|+.|++.||++|.+|..|+||||+|++.| +.+++++|++ |++ ++..|..|.|+||+|...
T Consensus 186 ~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gad-in~~d~~G~TpLh~A~~~ 252 (446)
T PHA02946 186 PKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STD-VNKQNKFGDSPLTLLIKT 252 (446)
T ss_pred CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCC-CCCCCCCCCCHHHHHHHh
Confidence 4467889999999999999999999999999876 4567887775 888 888899999999988665
No 48
>PHA02878 ankyrin repeat protein; Provisional
Probab=98.48 E-value=2e-08 Score=106.37 Aligned_cols=76 Identities=11% Similarity=0.065 Sum_probs=64.8
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeecc-CCchhhHHHHhcC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAES-GGQSTMDVLCQIG 306 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~-G~~~iv~vLlq~G 306 (492)
..|.|+||+|+.. |+.++|+.|+..||++|.+|..|+||||+|+.. ++.++++.|++.|
T Consensus 199 ~~g~tpLh~A~~~--------------------~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~g 258 (477)
T PHA02878 199 KTNNSPLHHAVKH--------------------YNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHG 258 (477)
T ss_pred CCCCCHHHHHHHh--------------------CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcC
Confidence 4567888886544 458999999999999999999999999999975 6779999999999
Q ss_pred CCCCcccCC-CCCceeEEe
Q 011140 307 LDGIRMLDP-NTSRTLRIY 324 (492)
Q Consensus 307 adGv~v~Dk-ngnnaLHIA 324 (492)
++ +++.+. .|.|+||+|
T Consensus 259 ad-vn~~~~~~g~TpLh~A 276 (477)
T PHA02878 259 VD-VNAKSYILGLTALHSS 276 (477)
T ss_pred CC-CCccCCCCCCCHHHHH
Confidence 99 887775 799999998
No 49
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=98.47 E-value=1.2e-08 Score=77.46 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=35.3
Q ss_pred CCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHH
Q 011140 260 SGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLC 303 (492)
Q Consensus 260 ~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLl 303 (492)
.|+.++|+.|++.|+++|.+|..|.||||+|+..|+.++++.|+
T Consensus 11 ~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 11 SGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp TT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred hCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 34599999999999999999999999999999999999999886
No 50
>PHA03100 ankyrin repeat protein; Provisional
Probab=98.46 E-value=2.8e-08 Score=104.07 Aligned_cols=67 Identities=21% Similarity=0.197 Sum_probs=45.0
Q ss_pred CCchhhhhhcccCCcccccccccccceEEEeeccC--CchhhHHHHhcCCCCCcccCCCCCceeEEeecc
Q 011140 260 SGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESG--GQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 260 ~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G--~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe 327 (492)
.|+.++|+.|++.|++++.+|..|+|+||+|++.| +.++++.|++.|++ ++..|..|.|+||+|...
T Consensus 118 ~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~d-in~~d~~g~tpL~~A~~~ 186 (480)
T PHA03100 118 SNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVD-INAKNRYGYTPLHIAVEK 186 (480)
T ss_pred cChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCC-cccccCCCCCHHHHHHHh
Confidence 34566777777777777666666777777777666 66667777777766 666666666777666554
No 51
>PHA02730 ankyrin-like protein; Provisional
Probab=98.43 E-value=2.9e-08 Score=110.70 Aligned_cols=82 Identities=9% Similarity=0.003 Sum_probs=68.0
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccC--CchhhHHHHhc
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESG--GQSTMDVLCQI 305 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G--~~~iv~vLlq~ 305 (492)
..|.|+||||+..++ -|+.+||++||.+||+++.+|..|+||||+|+..+ +.++|++|++.
T Consensus 39 ~~G~TaLh~A~~~~~-----------------~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~ 101 (672)
T PHA02730 39 RRGNNALHCYVSNKC-----------------DTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISS 101 (672)
T ss_pred CCCCcHHHHHHHcCC-----------------cCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhc
Confidence 357899999887653 12489999999999999999999999999999977 68999999999
Q ss_pred CCCC-CcccCCCCCceeEEeec
Q 011140 306 GLDG-IRMLDPNTSRTLRIYPL 326 (492)
Q Consensus 306 GadG-v~v~DkngnnaLHIApL 326 (492)
|++- ++..|..+.++||.+..
T Consensus 102 ~~~~~~~~~~~~~d~~l~~y~~ 123 (672)
T PHA02730 102 YSNASNELTSNINDFDLYSYMS 123 (672)
T ss_pred CCCCCcccccccCCchHHHHHH
Confidence 7651 35567668888888866
No 52
>PHA02884 ankyrin repeat protein; Provisional
Probab=98.43 E-value=3e-08 Score=101.33 Aligned_cols=71 Identities=14% Similarity=0.189 Sum_probs=62.5
Q ss_pred ccCCCchhhhhhcccCCccccccc----ccccceEEEeeccCCchhhHHHHhcCCCCCccc-CCCCCceeEEeeccc
Q 011140 257 SVGSGSSKIVRAVPKVDTHQDVKS----GVQKFRVKLLAESGGQSTMDVLCQIGLDGIRML-DPNTSRTLRIYPLEN 328 (492)
Q Consensus 257 ~~~~G~~~iVr~LlkagA~vn~kD----~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~-DkngnnaLHIApLe~ 328 (492)
|+..|+.++|+.||++||++|.++ ..|+||||+|++.|+.++++.|+++||+ ++.. +..|.|+||+|....
T Consensus 40 A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GAD-VN~~~~~~g~TpLh~Aa~~~ 115 (300)
T PHA02884 40 SIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGAD-VNRYAEEAKITPLYISVLHG 115 (300)
T ss_pred HHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cCcccCCCCCCHHHHHHHcC
Confidence 344557999999999999999974 5899999999999999999999999999 8875 467999999997664
No 53
>PHA02917 ankyrin-like protein; Provisional
Probab=98.42 E-value=4.2e-08 Score=109.56 Aligned_cols=100 Identities=10% Similarity=-0.012 Sum_probs=76.9
Q ss_pred CcCCCCCCCccccccccCCcc--cCC-CCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHH
Q 011140 226 ARGTVPKSSNSTLFDDYGRSI--SFP-SAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVL 302 (492)
Q Consensus 226 ~~g~~~~~~~~a~~~d~~~~i--~~~-s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vL 302 (492)
+...|.|+||+|+.-.++--. ... .-.....+...+..++|+.||.+||++|.+|..|+||||+|+..++.++++.|
T Consensus 392 ~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~L 471 (661)
T PHA02917 392 HLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLL 471 (661)
T ss_pred cCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHH
Confidence 466799999998744332000 000 00000012344468899999999999999999999999999999999999999
Q ss_pred HhcCCCCCcccCCCCCceeEEeec
Q 011140 303 CQIGLDGIRMLDPNTSRTLRIYPL 326 (492)
Q Consensus 303 lq~GadGv~v~DkngnnaLHIApL 326 (492)
++.|++ ++..|..|.|+||+|..
T Consensus 472 l~~GAd-in~~d~~G~T~L~~A~~ 494 (661)
T PHA02917 472 LESGSD-VNIRSNNGYTCIAIAIN 494 (661)
T ss_pred HHCcCC-CCCCCCCCCCHHHHHHH
Confidence 999999 99999999999999964
No 54
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.41 E-value=3.9e-08 Score=111.78 Aligned_cols=70 Identities=14% Similarity=0.200 Sum_probs=66.5
Q ss_pred ccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeecc
Q 011140 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 257 ~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe 327 (492)
+|..|+.++|+.||++|+++|.+|..|+||||+|+..|+.+++++|++.|++ ++..|.+|+|+||+|...
T Consensus 532 Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad-in~~d~~G~TpL~~A~~~ 601 (823)
T PLN03192 532 VASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACN-VHIRDANGNTALWNAISA 601 (823)
T ss_pred HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCC-CCCcCCCCCCHHHHHHHh
Confidence 6777899999999999999999999999999999999999999999999999 999999999999998665
No 55
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.40 E-value=4e-08 Score=109.57 Aligned_cols=71 Identities=15% Similarity=0.201 Sum_probs=66.9
Q ss_pred ccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeeccc
Q 011140 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 257 ~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe~ 328 (492)
++..|+.++|+.||+.|+++|.+|..|+|+||+|+..|+.++++.|++.|++ +++.|.+|.|+||+|....
T Consensus 89 aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad-vn~~d~~G~TpLh~A~~~g 159 (664)
T PTZ00322 89 LAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGAD-PTLLDKDGKTPLELAEENG 159 (664)
T ss_pred HHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCC
Confidence 4667789999999999999999999999999999999999999999999999 9999999999999998764
No 56
>PHA02876 ankyrin repeat protein; Provisional
Probab=98.39 E-value=5.1e-08 Score=107.89 Aligned_cols=65 Identities=11% Similarity=0.101 Sum_probs=57.1
Q ss_pred CchhhhhhcccCCcccccccccccceEEEeeccC-CchhhHHHHhcCCCCCcccCCCCCceeEEeec
Q 011140 261 GSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESG-GQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPL 326 (492)
Q Consensus 261 G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G-~~~iv~vLlq~GadGv~v~DkngnnaLHIApL 326 (492)
+...+|+.|++.||++|.+|..|+||||+|++.| +.+++++|++.|++ +++.|..|.|+||+|..
T Consensus 420 ~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad-~n~~d~~g~tpl~~a~~ 485 (682)
T PHA02876 420 NPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGAD-VNAINIQNQYPLLIALE 485 (682)
T ss_pred CHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHH
Confidence 3467899999999999999999999999999877 56899999999999 88999999999998754
No 57
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=98.35 E-value=1.3e-07 Score=85.14 Aligned_cols=93 Identities=8% Similarity=0.079 Sum_probs=78.2
Q ss_pred ccccccCcCCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCc---ccccccccccceEEEeeccCCc
Q 011140 220 KLEPYGARGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDT---HQDVKSGVQKFRVKLLAESGGQ 296 (492)
Q Consensus 220 ~~~~~~~~g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA---~vn~kD~~gkTpLHlAa~~G~~ 296 (492)
..++.--.-.|.|+||+|++.+.- ..|..++|+.||+.|+ ..+.+|..|+||||+|+..|+.
T Consensus 96 ~~~~~~~~~~g~t~l~~a~~~~~~---------------~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~ 160 (235)
T COG0666 96 GADVNAKDADGDTPLHLAALNGNP---------------PEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDA 160 (235)
T ss_pred CCCcccccCCCCcHHHHHHhcCCc---------------ccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCch
Confidence 345555556788999999888751 4556999999999999 5555599999999999999999
Q ss_pred hhhHHHHhcCCCCCcccCCCCCceeEEeeccc
Q 011140 297 STMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 297 ~iv~vLlq~GadGv~v~DkngnnaLHIApLe~ 328 (492)
.++.+|++.|++ ++..+..|.++|+++....
T Consensus 161 ~~~~~ll~~~~~-~~~~~~~g~t~l~~a~~~~ 191 (235)
T COG0666 161 DIVELLLEAGAD-PNSRNSYGVTALDPAAKNG 191 (235)
T ss_pred HHHHHHHhcCCC-CcccccCCCcchhhhcccc
Confidence 999999999999 8888999999999985553
No 58
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=98.34 E-value=1.2e-07 Score=93.43 Aligned_cols=74 Identities=16% Similarity=0.222 Sum_probs=62.5
Q ss_pred cCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeeccccccc
Q 011140 258 VGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLENITRC 332 (492)
Q Consensus 258 ~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe~It~c 332 (492)
++.|+..+|+.||..||++++..+...++|.||.++|..+||.+||..+.| +++.|-||-|+|-.|+..+-++|
T Consensus 168 aa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vd-VNvyDwNGgTpLlyAvrgnhvkc 241 (296)
T KOG0502|consen 168 AAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVD-VNVYDWNGGTPLLYAVRGNHVKC 241 (296)
T ss_pred HhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCC-cceeccCCCceeeeeecCChHHH
Confidence 444568899999999999988888888999999999988999999999998 88899999999988877765444
No 59
>PHA02989 ankyrin repeat protein; Provisional
Probab=98.33 E-value=6.2e-08 Score=103.39 Aligned_cols=66 Identities=12% Similarity=0.050 Sum_probs=57.9
Q ss_pred CchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeeccc
Q 011140 261 GSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 261 G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe~ 328 (492)
+..+++++|+ .||++|.+|..|+||||+|++.|+.++++.|++.|++ +++.|..|.|+||+|....
T Consensus 235 ~~~~il~~l~-~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gad-in~~d~~G~TpL~~A~~~~ 300 (494)
T PHA02989 235 KEFKVLNFIL-KYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDD-IYNVSKDGDTVLTYAIKHG 300 (494)
T ss_pred cchHHHHHHH-hCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcC
Confidence 4456666554 4688999999999999999999999999999999999 9999999999999997664
No 60
>PHA03100 ankyrin repeat protein; Provisional
Probab=98.33 E-value=1.2e-07 Score=99.47 Aligned_cols=71 Identities=13% Similarity=0.145 Sum_probs=64.4
Q ss_pred ccCCCchhhhhhcccCCcccccccccccceEEEee--ccCCchhhHHHHhcCCCCCcccCCCCCceeEEeeccc
Q 011140 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLA--ESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 257 ~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa--~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe~ 328 (492)
++..|+.++|+.|++.||++|..|..|.||||+|+ +.|+.++++.|++.|++ ++..|..|.++||+|....
T Consensus 80 a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 152 (480)
T PHA03100 80 YNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGAN-VNIKNSDGENLLHLYLESN 152 (480)
T ss_pred HHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcC
Confidence 44555699999999999999999999999999999 99999999999999999 8899999999999997554
No 61
>PHA02798 ankyrin-like protein; Provisional
Probab=98.33 E-value=7.6e-08 Score=102.58 Aligned_cols=82 Identities=13% Similarity=0.094 Sum_probs=70.2
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCC---chhhHHHHh
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGG---QSTMDVLCQ 304 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~---~~iv~vLlq 304 (492)
..|.|+||+|+.... .++.++|+.|+++||++|.+|..|.||||+|++.|+ .++++.|++
T Consensus 107 ~~G~TpLh~a~~~~~-----------------~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~ 169 (489)
T PHA02798 107 SDGETPLYCLLSNGY-----------------INNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLE 169 (489)
T ss_pred CCcCcHHHHHHHcCC-----------------cChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHH
Confidence 568899999887653 146899999999999999999999999999999998 799999999
Q ss_pred cCCCCCccc-CCCCCceeEEeecc
Q 011140 305 IGLDGIRML-DPNTSRTLRIYPLE 327 (492)
Q Consensus 305 ~GadGv~v~-DkngnnaLHIApLe 327 (492)
.|++ ++.. +..+.++||.+...
T Consensus 170 ~gad-in~~~~~~~~t~Lh~~~~~ 192 (489)
T PHA02798 170 KGVD-INTHNNKEKYDTLHCYFKY 192 (489)
T ss_pred hCCC-cccccCcCCCcHHHHHHHh
Confidence 9999 7766 45788999976543
No 62
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.32 E-value=1e-07 Score=99.16 Aligned_cols=68 Identities=19% Similarity=0.251 Sum_probs=60.2
Q ss_pred ccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEe
Q 011140 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (492)
Q Consensus 257 ~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIA 324 (492)
+|.-|..++|++||..||+||++|-.|-|+|.+|+|.||.+|+.+||..-...+.+.|.+|.|+|.||
T Consensus 347 AVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IA 414 (452)
T KOG0514|consen 347 AVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIA 414 (452)
T ss_pred hhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhH
Confidence 56667899999999999999999999999999999999999999998855443779999999999997
No 63
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=98.29 E-value=1.3e-07 Score=107.08 Aligned_cols=62 Identities=11% Similarity=0.116 Sum_probs=54.7
Q ss_pred CchhhhhhcccCCcccccccccccceEEEeec--------------cCCchhhHHHHhcCCCCCcccCCCCCceeEE
Q 011140 261 GSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAE--------------SGGQSTMDVLCQIGLDGIRMLDPNTSRTLRI 323 (492)
Q Consensus 261 G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~--------------~G~~~iv~vLlq~GadGv~v~DkngnnaLHI 323 (492)
++.++|++|++.||++|.+|..|+||||+|+. .++.++++.|++.|++ ++..|..|.|+||+
T Consensus 330 ~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GAD-In~kn~~G~TPLh~ 405 (764)
T PHA02716 330 ISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGAD-ITAVNCLGYTPLTS 405 (764)
T ss_pred CCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCC-CCCcCCCCCChHHH
Confidence 35789999999999999999999999998754 3677899999999999 88999999999994
No 64
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=98.29 E-value=4.8e-08 Score=109.35 Aligned_cols=79 Identities=15% Similarity=0.095 Sum_probs=70.6
Q ss_pred CCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCccccccc--------------ccccceEEEeeccC
Q 011140 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKS--------------GVQKFRVKLLAESG 294 (492)
Q Consensus 229 ~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD--------------~~gkTpLHlAa~~G 294 (492)
.|.|+||+||-.+ +.+||++||+.||++|.++ ..|+|+||+|+..|
T Consensus 127 ~G~TpLhlAa~~~--------------------~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~ 186 (743)
T TIGR00870 127 PGITALHLAAHRQ--------------------NYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLG 186 (743)
T ss_pred CCCcHHHHHHHhC--------------------CHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhC
Confidence 4788999976655 4999999999999999763 25899999999999
Q ss_pred CchhhHHHHhcCCCCCcccCCCCCceeEEeeccc
Q 011140 295 GQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 295 ~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe~ 328 (492)
+.+++++|+++|+| ++..|..|+|+||+|.++.
T Consensus 187 ~~~iv~lLl~~gad-in~~d~~g~T~Lh~A~~~~ 219 (743)
T TIGR00870 187 SPSIVALLSEDPAD-ILTADSLGNTLLHLLVMEN 219 (743)
T ss_pred CHHHHHHHhcCCcc-hhhHhhhhhHHHHHHHhhh
Confidence 99999999999999 8999999999999998874
No 65
>PHA02876 ankyrin repeat protein; Provisional
Probab=98.29 E-value=1.2e-07 Score=104.87 Aligned_cols=69 Identities=13% Similarity=0.127 Sum_probs=65.2
Q ss_pred cCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeecc
Q 011140 258 VGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 258 ~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe 327 (492)
+..|+.+||++|+..||++|.+|..|.||||+|++.|+.++|+.|++.|++ +++.+.+|.++||.|...
T Consensus 153 i~~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad-~n~~~~~g~t~L~~A~~~ 221 (682)
T PHA02876 153 IQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGAD-VNIIALDDLSVLECAVDS 221 (682)
T ss_pred HHCCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-cCccCCCCCCHHHHHHHc
Confidence 467899999999999999999999999999999999999999999999999 889999999999998665
No 66
>PHA02743 Viral ankyrin protein; Provisional
Probab=98.28 E-value=1.9e-07 Score=86.35 Aligned_cols=69 Identities=7% Similarity=-0.057 Sum_probs=59.7
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcc-cCCcccccccccccceEEEeeccCCchhhHHHHhcC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVP-KVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~Ll-kagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~G 306 (492)
..|.|+||+|+..+ +.++|++|+ +.|++++.+|..|+||||+|+..++.+++++|++.|
T Consensus 92 ~~g~TpLh~A~~~g--------------------~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g 151 (166)
T PHA02743 92 GTGNTLLHIAASTK--------------------NYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANG 151 (166)
T ss_pred CCCCcHHHHHHHhC--------------------CHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 36889999977654 489999999 589999999999999999999999999999999999
Q ss_pred CCCCcccCCCC
Q 011140 307 LDGIRMLDPNT 317 (492)
Q Consensus 307 adGv~v~Dkng 317 (492)
++ ++..+..|
T Consensus 152 a~-~~~~~~~~ 161 (166)
T PHA02743 152 AV-CDDPLSIG 161 (166)
T ss_pred CC-CCCcccCC
Confidence 99 66555444
No 67
>PHA02792 ankyrin-like protein; Provisional
Probab=98.27 E-value=1.1e-07 Score=105.52 Aligned_cols=63 Identities=16% Similarity=0.080 Sum_probs=59.2
Q ss_pred hhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeec
Q 011140 263 SKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPL 326 (492)
Q Consensus 263 ~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApL 326 (492)
.+|++.|+++||++|.+|..|+||||+|++.++.++++.|+++|++ ++..|..|+|+||+|..
T Consensus 390 ~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GAD-IN~kD~~G~TpL~~A~~ 452 (631)
T PHA02792 390 LSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGAD-INITTKYGSTCIGICVI 452 (631)
T ss_pred HHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHH
Confidence 4678999999999999999999999999999999999999999999 99999999999999854
No 68
>PHA02736 Viral ankyrin protein; Provisional
Probab=98.26 E-value=1.7e-07 Score=84.50 Aligned_cols=52 Identities=12% Similarity=0.074 Sum_probs=47.2
Q ss_pred ccCCCchhhhhhccc-CCcccccccccccceEEEeeccCCchhhHHHHhcCCC
Q 011140 257 SVGSGSSKIVRAVPK-VDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (492)
Q Consensus 257 ~~~~G~~~iVr~Llk-agA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Gad 308 (492)
++..|+.++|+.||+ .|+++|.+|..|+||||+|+..|+.++++.|+++|++
T Consensus 99 A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~ 151 (154)
T PHA02736 99 AVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQ 151 (154)
T ss_pred HHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 344556999999997 5999999999999999999999999999999999998
No 69
>PHA02917 ankyrin-like protein; Provisional
Probab=98.24 E-value=1.6e-07 Score=104.92 Aligned_cols=70 Identities=11% Similarity=0.060 Sum_probs=60.3
Q ss_pred cCCCchhhhhhcccCCcccccccc---cc-----------cceEEEeec-----------cCCchhhHHHHhcCCCCCcc
Q 011140 258 VGSGSSKIVRAVPKVDTHQDVKSG---VQ-----------KFRVKLLAE-----------SGGQSTMDVLCQIGLDGIRM 312 (492)
Q Consensus 258 ~~~G~~~iVr~LlkagA~vn~kD~---~g-----------kTpLHlAa~-----------~G~~~iv~vLlq~GadGv~v 312 (492)
+..|+.+||++||++||++|.+|. .| +|+||+|+. .++.++|+.|++.||+ ++.
T Consensus 146 ~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gad-vn~ 224 (661)
T PHA02917 146 TDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIK-PSS 224 (661)
T ss_pred ccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCC-ccc
Confidence 456789999999999999987654 33 599999975 4577999999999999 999
Q ss_pred cCCCCCceeEEeeccc
Q 011140 313 LDPNTSRTLRIYPLEN 328 (492)
Q Consensus 313 ~DkngnnaLHIApLe~ 328 (492)
.|.+|.|+||+|....
T Consensus 225 ~d~~G~TpLh~A~~~g 240 (661)
T PHA02917 225 IDKNYCTALQYYIKSS 240 (661)
T ss_pred CCCCCCcHHHHHHHcC
Confidence 9999999999998653
No 70
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=98.22 E-value=3e-07 Score=99.79 Aligned_cols=62 Identities=31% Similarity=0.704 Sum_probs=53.2
Q ss_pred CCCcccCcCCccccccCccccCc-cccccccccCceeccCCCCCcEecccCCCCCceecccchHHH
Q 011140 419 KDHWVPDEAVSKCTACGTDFSAF-VRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVG 483 (492)
Q Consensus 419 ~p~WvpD~~v~~C~~C~~~Fs~~-~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~ 483 (492)
.+.| +.++++|+.|+..|+.+ .|||||+.||.|+|++|+.++..+... ..+..|||.+|+..
T Consensus 408 ~~r~--~~k~~~c~~c~e~~~s~t~~R~~~k~~~~vlc~~cs~~~~~l~~~-~s~ssrv~~~~~~~ 470 (623)
T KOG4424|consen 408 APRR--DNKVTSCDSCEETFNSITFRRHRCKAKGAVLCDKCSDFMAKLSYD-NSRSSRVCMDRYLT 470 (623)
T ss_pred Cccc--ccccccchhhcCchhhHHHhhhhhhhccceeeccccchhhhhccc-ccchhhhhhhhccC
Confidence 4566 77899999999999965 689999999999999999998877663 45789999999964
No 71
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=98.19 E-value=4.8e-07 Score=89.21 Aligned_cols=96 Identities=11% Similarity=-0.002 Sum_probs=75.3
Q ss_pred CCCCCCCccccccccCCcccCC--CC-------ccc----ccccCCCchhhhhhcccCCcccccccccccceEEEeeccC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFP--SA-------KDS----RSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESG 294 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~--s~-------~~~----~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G 294 (492)
..|.|+|.|||.++-=--.-|. ++ ++. +-+...|..+||++||..+.+||+-|++|-|||-.|++.+
T Consensus 158 e~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgn 237 (296)
T KOG0502|consen 158 EFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGN 237 (296)
T ss_pred ccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCC
Confidence 3567999999887530000010 11 111 1245678899999999999999999999999999999999
Q ss_pred CchhhHHHHhcCCCCCcccCCCCCceeEEe
Q 011140 295 GQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (492)
Q Consensus 295 ~~~iv~vLlq~GadGv~v~DkngnnaLHIA 324 (492)
|.++|+.||+.||+ +...|..|++.+-+|
T Consensus 238 hvkcve~Ll~sGAd-~t~e~dsGy~~mdlA 266 (296)
T KOG0502|consen 238 HVKCVESLLNSGAD-VTQEDDSGYWIMDLA 266 (296)
T ss_pred hHHHHHHHHhcCCC-cccccccCCcHHHHH
Confidence 99999999999999 888899998887665
No 72
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.14 E-value=3.9e-07 Score=102.09 Aligned_cols=64 Identities=17% Similarity=0.260 Sum_probs=31.5
Q ss_pred hhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeecc
Q 011140 263 SKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 263 ~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe 327 (492)
.++|+.|+++||+.++.+..+++|||+|+..|..+.+.+|++.|+| +++.|.++.|+||+|...
T Consensus 101 ~~~i~~Lls~gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~d-vnl~de~~~TpLh~A~~~ 164 (929)
T KOG0510|consen 101 GDKIQVLLSYGADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGAD-VNLEDENGFTPLHLAARK 164 (929)
T ss_pred HHHHHHHHhcCCCCChhhhhccCchhhccccchHHHHHHHHHhcCC-ccccccCCCchhhHHHhc
Confidence 4444445555555444444455555555554444444455554444 444444554455444444
No 73
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=98.14 E-value=1.5e-07 Score=72.65 Aligned_cols=44 Identities=9% Similarity=-0.044 Sum_probs=28.9
Q ss_pred cCCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEe
Q 011140 227 RGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLL 290 (492)
Q Consensus 227 ~g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlA 290 (492)
-..|.|+||||+..+. .++|+.||+.|++++++|..|+||||+|
T Consensus 13 d~~G~T~LH~A~~~g~--------------------~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 13 DKYGNTPLHWAARYGH--------------------SEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp -TTS--HHHHHHHHT---------------------HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCCCCcHHHHHHHcCc--------------------HHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 3456799999887665 9999999999999999999999999987
No 74
>PHA02795 ankyrin-like protein; Provisional
Probab=98.08 E-value=5.7e-07 Score=96.27 Aligned_cols=69 Identities=7% Similarity=0.060 Sum_probs=58.1
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCC--------chhh
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGG--------QSTM 299 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~--------~~iv 299 (492)
..|.|+||+|+..+ +.++|+.||++||++|.+|..|+||||+|++.|+ .+++
T Consensus 219 ~~G~TpLh~Aa~~g--------------------~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIv 278 (437)
T PHA02795 219 AGGRTLLYRAIYAG--------------------YIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKIL 278 (437)
T ss_pred CCCCCHHHHHHHcC--------------------CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHH
Confidence 35677888866544 5999999999999999999999999999999984 4899
Q ss_pred HHHHhcCCCCCcccCCCC
Q 011140 300 DVLCQIGLDGIRMLDPNT 317 (492)
Q Consensus 300 ~vLlq~GadGv~v~Dkng 317 (492)
++|++.|++ ++.++..+
T Consensus 279 elLL~~gad-I~~~~~~~ 295 (437)
T PHA02795 279 EILLREPLS-IDCIKLAI 295 (437)
T ss_pred HHHHhCCCC-CCchhHHh
Confidence 999999998 77655443
No 75
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.08 E-value=7.1e-07 Score=96.18 Aligned_cols=79 Identities=11% Similarity=0.124 Sum_probs=71.3
Q ss_pred CCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCC
Q 011140 230 VPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDG 309 (492)
Q Consensus 230 ~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadG 309 (492)
|.|.||.||-++| ..+.++||++|.+++++|..|+||||-||.=|..+++++|+++|++
T Consensus 198 G~T~lHvAaa~Gy--------------------~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~- 256 (527)
T KOG0505|consen 198 GATALHVAAANGY--------------------TEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGAD- 256 (527)
T ss_pred cchHHHHHHhhhH--------------------HHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcc-
Confidence 6777888777777 8999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCceeEEeecccc
Q 011140 310 IRMLDPNTSRTLRIYPLENI 329 (492)
Q Consensus 310 v~v~DkngnnaLHIApLe~I 329 (492)
+++..+.|.++|-++.-+.+
T Consensus 257 ~d~~t~~g~~p~dv~dee~~ 276 (527)
T KOG0505|consen 257 MDAKTKMGETPLDVADEEEL 276 (527)
T ss_pred cchhhhcCCCCccchhhhhH
Confidence 99999999999988755443
No 76
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=98.06 E-value=4.7e-07 Score=79.09 Aligned_cols=74 Identities=19% Similarity=0.229 Sum_probs=62.3
Q ss_pred ccccCcCCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHH
Q 011140 222 EPYGARGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDV 301 (492)
Q Consensus 222 ~~~~~~g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~v 301 (492)
|-||. -++||+|| || |..+|++.|+..||+++.+|+.|.|||--|+..||...|.+
T Consensus 30 ~~~gg----R~plhyAA--D~------------------GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVkl 85 (117)
T KOG4214|consen 30 EIYGG----RTPLHYAA--DY------------------GQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKL 85 (117)
T ss_pred HHhCC----cccchHhh--hc------------------chHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHH
Confidence 45543 48999976 45 45899999999999999999999999999999999999999
Q ss_pred HHhcCCCCCcccCCCCCce
Q 011140 302 LCQIGLDGIRMLDPNTSRT 320 (492)
Q Consensus 302 Llq~GadGv~v~Dkngnna 320 (492)
||++||+ -.+.-++|.+.
T Consensus 86 LL~~GAd-rt~~~PdG~~~ 103 (117)
T KOG4214|consen 86 LLQNGAD-RTIHAPDGTAL 103 (117)
T ss_pred HHHcCcc-cceeCCCchhH
Confidence 9999999 44666666443
No 77
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=98.03 E-value=4.3e-07 Score=99.16 Aligned_cols=64 Identities=33% Similarity=0.752 Sum_probs=54.8
Q ss_pred CCcccCc----CCcccccc-CccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHH
Q 011140 420 DHWVPDE----AVSKCTAC-GTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVG 483 (492)
Q Consensus 420 p~WvpD~----~v~~C~~C-~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~ 483 (492)
..|++|. .-..||.| ++.|..++||||||.||+..|..|...+.....-++..+.++|+.|+.+
T Consensus 314 ~nfq~darrafs~a~~~a~~R~~~kd~~Rk~~~~g~Ga~e~aa~ea~kgiqEd~gse~~Adg~Dq~psv 382 (1141)
T KOG1811|consen 314 HNFQPDARRAFSEAICMACCREHFKDFNRKHHCRGCGALECAACEAKKGIQEDCGSENPADGCDQCPSV 382 (1141)
T ss_pred hhcChhhhhhhhhhHHHHHHHHHHHHHHHhhhccccchHHHhHHHHhhhhhhcccccCcccccccccch
Confidence 5799987 44578855 6899999999999999999999999988777766777899999999854
No 78
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=98.02 E-value=9.1e-07 Score=79.63 Aligned_cols=71 Identities=20% Similarity=0.242 Sum_probs=63.6
Q ss_pred cCCCchhhhhhcccCCcccccccccccceEEEeeccCC-----chhhHHHHhcCC--CCCcccCCCCCceeEEeeccc
Q 011140 258 VGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGG-----QSTMDVLCQIGL--DGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 258 ~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~-----~~iv~vLlq~Ga--dGv~v~DkngnnaLHIApLe~ 328 (492)
+..+..++++.|+..|++++.+|..|.|+||+|+..|+ .++++.|++.|+ +-....|.+|+++||+|.+..
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~ 158 (235)
T COG0666 81 ASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNG 158 (235)
T ss_pred HHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcC
Confidence 34456889999999999999999999999999999999 899999999999 436677999999999997774
No 79
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.00 E-value=2.2e-06 Score=92.55 Aligned_cols=80 Identities=11% Similarity=0.093 Sum_probs=73.7
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Ga 307 (492)
-+|-|+||-+..|++ ..||+.|+..||.||..|..++||||.|+--||..|+..||++||
T Consensus 71 ~DglTalhq~~id~~--------------------~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA 130 (527)
T KOG0505|consen 71 VDGLTALHQACIDDN--------------------LEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGA 130 (527)
T ss_pred CccchhHHHHHhccc--------------------HHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhh
Confidence 356788999888887 999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeEEeeccc
Q 011140 308 DGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 308 dGv~v~DkngnnaLHIApLe~ 328 (492)
+ +..++..|+-++-++.-+.
T Consensus 131 ~-~~avNsdg~~P~dl~e~ea 150 (527)
T KOG0505|consen 131 N-LLAVNSDGNMPYDLAEDEA 150 (527)
T ss_pred h-hhhccCCCCCccccccCcc
Confidence 9 9899999999998876554
No 80
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=97.99 E-value=2.2e-06 Score=92.61 Aligned_cols=71 Identities=13% Similarity=0.076 Sum_probs=54.1
Q ss_pred ccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeeccc
Q 011140 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 257 ~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe~ 328 (492)
++..|-.++|+..|+--.|...-+-.|.|+||-|+-.||.+||+.|+++|++ |++.|.+|.|+||-|..-+
T Consensus 557 aaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~gan-VNa~DSdGWTPLHCAASCN 627 (752)
T KOG0515|consen 557 AALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGAN-VNAADSDGWTPLHCAASCN 627 (752)
T ss_pred hhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCc-ccCccCCCCchhhhhhhcC
Confidence 4566677778777777767766677778888888888888888888888888 7788888888888777665
No 81
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=97.97 E-value=7.6e-07 Score=90.56 Aligned_cols=65 Identities=15% Similarity=0.229 Sum_probs=59.1
Q ss_pred CchhhhhhcccCCcccccc-cccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeec
Q 011140 261 GSSKIVRAVPKVDTHQDVK-SGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPL 326 (492)
Q Consensus 261 G~~~iVr~LlkagA~vn~k-D~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApL 326 (492)
|+.++|++||..|||||.+ +..+.||||+||-.|+..++++|++.||. ..+++.-|.|+-.+|..
T Consensus 56 Gnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~-~~~vNsvgrTAaqmAAF 121 (396)
T KOG1710|consen 56 GNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGAR-MYLVNSVGRTAAQMAAF 121 (396)
T ss_pred CcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCc-cccccchhhhHHHHHHH
Confidence 4599999999999999998 88999999999999999999999999999 88999999997655544
No 82
>PHA02730 ankyrin-like protein; Provisional
Probab=97.97 E-value=1.2e-06 Score=97.91 Aligned_cols=62 Identities=8% Similarity=0.047 Sum_probs=58.3
Q ss_pred hhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCC-CCCceeEEeec
Q 011140 264 KIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDP-NTSRTLRIYPL 326 (492)
Q Consensus 264 ~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~Dk-ngnnaLHIApL 326 (492)
++|+.||..||++|.+|..|+||||+|++.++.++++.|++.||+ ++..|. .|.++||+|..
T Consensus 443 ~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAd-IN~~d~~~g~TaL~~Aa~ 505 (672)
T PHA02730 443 DVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGAS-VNTTSRSIINTAIQKSSY 505 (672)
T ss_pred HHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCcCCcCHHHHHHH
Confidence 469999999999999999999999999999999999999999999 999997 58999999865
No 83
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=97.95 E-value=1.1e-06 Score=72.43 Aligned_cols=78 Identities=13% Similarity=0.160 Sum_probs=67.8
Q ss_pred CCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCC
Q 011140 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (492)
Q Consensus 229 ~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Gad 308 (492)
.|.++||+|++.+. .++|+.|++.+++++.++..|.|+||+|+..+..++++.|++.|++
T Consensus 6 ~g~t~l~~a~~~~~--------------------~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~ 65 (126)
T cd00204 6 DGRTPLHLAASNGH--------------------LEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD 65 (126)
T ss_pred CCCCHHHHHHHcCc--------------------HHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 35677888776654 8999999999999999999999999999999999999999999987
Q ss_pred CCcccCCCCCceeEEeecc
Q 011140 309 GIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 309 Gv~v~DkngnnaLHIApLe 327 (492)
++..+..+.+++|+|...
T Consensus 66 -~~~~~~~~~~~l~~a~~~ 83 (126)
T cd00204 66 -VNARDKDGNTPLHLAARN 83 (126)
T ss_pred -ccccCCCCCCHHHHHHHc
Confidence 778889999999987443
No 84
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=97.95 E-value=2e-06 Score=96.09 Aligned_cols=73 Identities=11% Similarity=0.070 Sum_probs=62.2
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhc--
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQI-- 305 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~-- 305 (492)
..|.|+||+|+..+ +.++|+.||++||++|.+|..|+||||+|++.|+.+++++|++.
T Consensus 113 ~~G~TpLh~Aa~~g--------------------~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~ 172 (664)
T PTZ00322 113 YDGRTPLHIACANG--------------------HVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQ 172 (664)
T ss_pred CCCCcHHHHHHHCC--------------------CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHhCCC
Confidence 45778899976554 59999999999999999999999999999999999999999998
Q ss_pred -----CCCCCcccCCCCCcee
Q 011140 306 -----GLDGIRMLDPNTSRTL 321 (492)
Q Consensus 306 -----GadGv~v~DkngnnaL 321 (492)
|++ .+..+..|.+++
T Consensus 173 ~~~~~ga~-~~~~~~~g~~~~ 192 (664)
T PTZ00322 173 CHFELGAN-AKPDSFTGKPPS 192 (664)
T ss_pred cccccCCC-CCccccCCCCcc
Confidence 777 556666665543
No 85
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=97.91 E-value=3.7e-06 Score=98.23 Aligned_cols=90 Identities=13% Similarity=0.067 Sum_probs=76.6
Q ss_pred ccccccCcCCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhh
Q 011140 220 KLEPYGARGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTM 299 (492)
Q Consensus 220 ~~~~~~~~g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv 299 (492)
+.++=-.-+++.|+||.|+-.+- .++|++|++.||++..+|..+.|+||+|+..|+.+|+
T Consensus 199 ~~~~~a~~~~~~tpl~~a~~~nr--------------------i~~~eLll~~gadv~a~d~~gl~~lh~a~~~g~~~i~ 258 (1143)
T KOG4177|consen 199 KADPNASALNGFTPLHIACKKNR--------------------IKVVELLLKHGADVSAKDESGLTPLHVAAFMGHLDIV 258 (1143)
T ss_pred cCCccccccCCCCchhhhccccc--------------------cceeeeeeeccCcCCcccccCccHHHHHHhccchhHH
Confidence 45666667888899999776664 7889999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCcccCCCCCceeEEeeccccc
Q 011140 300 DVLCQIGLDGIRMLDPNTSRTLRIYPLENIT 330 (492)
Q Consensus 300 ~vLlq~GadGv~v~DkngnnaLHIApLe~It 330 (492)
..|++.|+. +++.+..+.|+||+|++...+
T Consensus 259 ~~l~~~ga~-~~~~~vr~~tplh~AA~~~~~ 288 (1143)
T KOG4177|consen 259 KLLLQHGAS-VNVSTVRGETPLHMAARAGQV 288 (1143)
T ss_pred HHHHhcccc-cCcccccccCcchhhhccchh
Confidence 999999998 888899999999999888755
No 86
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=97.88 E-value=2.7e-06 Score=81.56 Aligned_cols=65 Identities=12% Similarity=-0.013 Sum_probs=59.0
Q ss_pred hhhhhhcccCCc-ccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeeccc
Q 011140 263 SKIVRAVPKVDT-HQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 263 ~~iVr~LlkagA-~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe~ 328 (492)
...||.||+-.| .||.+|..+.||||-|+++||..||..|++-||+ +.+.-..|.|+||-|.-=+
T Consensus 76 l~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn-~~a~T~~GWTPLhSAckWn 141 (228)
T KOG0512|consen 76 LTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN-KEAKTNEGWTPLHSACKWN 141 (228)
T ss_pred HHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCC-cccccccCccchhhhhccc
Confidence 788888888887 7999999999999999999999999999999999 8888899999999985443
No 87
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=97.85 E-value=2.2e-06 Score=70.70 Aligned_cols=79 Identities=13% Similarity=0.158 Sum_probs=67.7
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Ga 307 (492)
..|.++||.|+..+ +.++++.|++.|+.++..+..++|+||+|++.++.++++.|++.|.
T Consensus 38 ~~g~~~l~~a~~~~--------------------~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~ 97 (126)
T cd00204 38 NDGRTPLHLAAKNG--------------------HLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGA 97 (126)
T ss_pred CCCCcHHHHHHHcC--------------------CHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 34556777766555 4799999999999999999999999999999999999999999998
Q ss_pred CCCcccCCCCCceeEEeecc
Q 011140 308 DGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 308 dGv~v~DkngnnaLHIApLe 327 (492)
+ +...|..+.++|++|...
T Consensus 98 ~-~~~~~~~~~~~l~~~~~~ 116 (126)
T cd00204 98 D-VNARDKDGRTPLHLAAKN 116 (126)
T ss_pred C-CcccCCCCCCHHHHHHhc
Confidence 8 788899999999887443
No 88
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=97.79 E-value=5.5e-06 Score=93.17 Aligned_cols=81 Identities=15% Similarity=0.162 Sum_probs=72.3
Q ss_pred cccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccc-cccceEEEeeccCCchhhHHHHhcCCCCCcccCCC
Q 011140 238 LFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSG-VQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPN 316 (492)
Q Consensus 238 ~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~-~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~Dkn 316 (492)
..|+|||+.-+.+.++ |-..++|.||.+|++++++|. .|.|+||-|..-|+.+.+++||..|+. +.+.|++
T Consensus 47 ikD~~GR~alH~~~S~-------~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S-L~i~Dke 118 (1267)
T KOG0783|consen 47 IKDRYGRTALHIAVSE-------NKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS-LRIKDKE 118 (1267)
T ss_pred HHHhhccceeeeeecc-------chhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc-eEEeccc
Confidence 4689999999885554 458899999999999999998 899999999999999999999999999 9999999
Q ss_pred CCceeEEeec
Q 011140 317 TSRTLRIYPL 326 (492)
Q Consensus 317 gnnaLHIApL 326 (492)
|..+|.+...
T Consensus 119 glsplq~~~r 128 (1267)
T KOG0783|consen 119 GLSPLQFLSR 128 (1267)
T ss_pred CCCHHHHHhh
Confidence 9998877544
No 89
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=97.75 E-value=9.1e-06 Score=90.84 Aligned_cols=71 Identities=13% Similarity=0.065 Sum_probs=61.8
Q ss_pred cccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeecc
Q 011140 256 SSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 256 ~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe 327 (492)
.++-+|+.+||++||++++-+|..+..+.||||+|+..||.+++.+||+.|+|.. +.|.++.|+|.+|..-
T Consensus 88 laaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~-i~nns~~t~ldlA~qf 158 (854)
T KOG0507|consen 88 LAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPF-IRNNSKETVLDLASRF 158 (854)
T ss_pred ehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCcc-ccCcccccHHHHHHHh
Confidence 4677888999999999999999999999999999999999999999999999944 7788888888877543
No 90
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.74 E-value=3.8e-06 Score=94.25 Aligned_cols=70 Identities=13% Similarity=0.208 Sum_probs=60.1
Q ss_pred cCCCchhhhhhcccCCcccccc---------cc--------------cccceEEEeeccCCchhhHHHHhcCCCCCcccC
Q 011140 258 VGSGSSKIVRAVPKVDTHQDVK---------SG--------------VQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLD 314 (492)
Q Consensus 258 ~~~G~~~iVr~LlkagA~vn~k---------D~--------------~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~D 314 (492)
+...+.++|++||++||||+.+ |. .|..||-+||=-+..+|+++|++.||| +++.|
T Consensus 192 Iv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd-~~aqD 270 (782)
T KOG3676|consen 192 IVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGAD-PNAQD 270 (782)
T ss_pred HHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCC-CCccc
Confidence 3344589999999999999953 21 356799999999999999999999999 99999
Q ss_pred CCCCceeEEeeccc
Q 011140 315 PNTSRTLRIYPLEN 328 (492)
Q Consensus 315 kngnnaLHIApLe~ 328 (492)
.+|||.||+-+++.
T Consensus 271 S~GNTVLH~lVi~~ 284 (782)
T KOG3676|consen 271 SNGNTVLHMLVIHF 284 (782)
T ss_pred cCCChHHHHHHHHH
Confidence 99999999988774
No 91
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=97.71 E-value=2.9e-06 Score=64.42 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=36.7
Q ss_pred ccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeeccc
Q 011140 283 QKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 283 gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe~ 328 (492)
|.|+||+|++.|+.++++.|++.|++ ++..|.+|.|+||+|....
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~d-in~~d~~g~t~lh~A~~~g 45 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGAD-INAQDEDGRTPLHYAAKNG 45 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSG-TT-B-TTS--HHHHHHHTT
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcc
Confidence 57999999999999999999999999 9999999999999996553
No 92
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=97.70 E-value=1.4e-05 Score=89.28 Aligned_cols=70 Identities=14% Similarity=0.161 Sum_probs=65.4
Q ss_pred ccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeecc
Q 011140 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 257 ~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe 327 (492)
++..|+..|+++|+.+.|-+++.|..+++|||+|++.|+.+||.+||..+ +++++..-.+.++||+++-+
T Consensus 56 a~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~-d~~na~~~e~~tplhlaaqh 125 (854)
T KOG0507|consen 56 AVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQT-DILNAVNIENETPLHLAAQH 125 (854)
T ss_pred HHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcc-cCCCcccccCcCccchhhhh
Confidence 66777799999999999999999999999999999999999999999999 55889999999999999777
No 93
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=97.70 E-value=8.7e-06 Score=56.32 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=29.8
Q ss_pred cccceEEEeeccCCchhhHHHHhcCCCCCcccCC
Q 011140 282 VQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDP 315 (492)
Q Consensus 282 ~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~Dk 315 (492)
.|+||||+|++.|+.++++.|++.|++ +++.|+
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGAD-INARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSC-TTCBCT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCC-CCCCCC
Confidence 489999999999999999999999999 777653
No 94
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.62 E-value=1.7e-05 Score=83.00 Aligned_cols=62 Identities=19% Similarity=0.220 Sum_probs=51.3
Q ss_pred hhhhcccCCcccccc-cccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeeccc
Q 011140 265 IVRAVPKVDTHQDVK-SGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 265 iVr~LlkagA~vn~k-D~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe~ 328 (492)
+|.-|-+-| +||+| ..+|||+|.||+-.|..++|.+||.-||| |++.|.+|.|+|.-|.-+.
T Consensus 322 vV~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAd-VNiQDdDGSTALMCA~EHG 384 (452)
T KOG0514|consen 322 VVERLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGAD-VNIQDDDGSTALMCAAEHG 384 (452)
T ss_pred HHHHHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCC-CccccCCccHHHhhhhhhC
Confidence 333333333 56777 56999999999999999999999999999 9999999999998886663
No 95
>PHA02792 ankyrin-like protein; Provisional
Probab=97.59 E-value=4.3e-05 Score=85.20 Aligned_cols=72 Identities=8% Similarity=0.039 Sum_probs=61.7
Q ss_pred ccCCCchhhhhhcccCCcccccccccccceEEEeec-cCCchhhHHHHhcCCC---------------------------
Q 011140 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAE-SGGQSTMDVLCQIGLD--------------------------- 308 (492)
Q Consensus 257 ~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~-~G~~~iv~vLlq~Gad--------------------------- 308 (492)
+...|+.++|++|++.||+||.++..+.|+||+|+. +++.+++..|++.||+
T Consensus 79 ~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~ 158 (631)
T PHA02792 79 CSDNIDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDE 158 (631)
T ss_pred HHhcccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhh
Confidence 356789999999999999999999999999999966 6999999999999986
Q ss_pred --------CCcccCCCCCceeEEeeccc
Q 011140 309 --------GIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 309 --------Gv~v~DkngnnaLHIApLe~ 328 (492)
-++..|+.|.|+||.|....
T Consensus 159 ~~~~~~~~~i~~~~~~g~t~L~~~i~~~ 186 (631)
T PHA02792 159 LDDYDYDYTTDYDDRMGKTVLYYYIITR 186 (631)
T ss_pred ccccccccccccCCCCCCchHHHHHhhC
Confidence 12245677999999987765
No 96
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=97.57 E-value=1.7e-05 Score=81.06 Aligned_cols=67 Identities=10% Similarity=0.087 Sum_probs=61.8
Q ss_pred ccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEe
Q 011140 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (492)
Q Consensus 257 ~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIA 324 (492)
+|+-|+-+||..||+..||||..+.+|.||||.|.-=|...|++-|+..||. +.+.+++|.++|..|
T Consensus 74 aaahghrdivqkll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~-v~icnk~g~tpldka 140 (448)
T KOG0195|consen 74 AAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAA-VNICNKKGMTPLDKA 140 (448)
T ss_pred hhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccce-eeecccCCCCchhhh
Confidence 4455679999999999999999999999999999999999999999999999 999999999998765
No 97
>PF13606 Ank_3: Ankyrin repeat
Probab=97.55 E-value=1.6e-05 Score=54.73 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=26.8
Q ss_pred cccceEEEeeccCCchhhHHHHhcCCCCCc
Q 011140 282 VQKFRVKLLAESGGQSTMDVLCQIGLDGIR 311 (492)
Q Consensus 282 ~gkTpLHlAa~~G~~~iv~vLlq~GadGv~ 311 (492)
.|+|+||+|++.|+.++|+.|++.|+| ++
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gad-vn 29 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGAD-VN 29 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCC-CC
Confidence 489999999999999999999999998 54
No 98
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=97.50 E-value=2.6e-05 Score=84.51 Aligned_cols=53 Identities=11% Similarity=0.125 Sum_probs=50.5
Q ss_pred cccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCC
Q 011140 256 SSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (492)
Q Consensus 256 ~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Gad 308 (492)
-|+-.||.+||+.||.+||+||..|.+|+||||+||--++..+|+.|++.|+-
T Consensus 589 NAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~Gaa 641 (752)
T KOG0515|consen 589 NAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAA 641 (752)
T ss_pred hhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHhccce
Confidence 36778999999999999999999999999999999999999999999999988
No 99
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=97.46 E-value=1.3e-05 Score=89.91 Aligned_cols=70 Identities=13% Similarity=0.049 Sum_probs=56.9
Q ss_pred CCCchhhhhhcccCCcccccccccccceEEEeeccCC---------chhhHHHHhcCCCC--C----cccCCCCCceeEE
Q 011140 259 GSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGG---------QSTMDVLCQIGLDG--I----RMLDPNTSRTLRI 323 (492)
Q Consensus 259 ~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~---------~~iv~vLlq~GadG--v----~v~DkngnnaLHI 323 (492)
..|+.++|++|++.||++|.+|..|+|+||+|+..+. ..+.+.+++.++.+ . .+.|.+|.|+||+
T Consensus 184 ~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~ 263 (743)
T TIGR00870 184 CLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKL 263 (743)
T ss_pred HhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhh
Confidence 3445999999999999999999999999999999872 23466777776663 2 4679999999999
Q ss_pred eeccc
Q 011140 324 YPLEN 328 (492)
Q Consensus 324 ApLe~ 328 (492)
|..+.
T Consensus 264 A~~~g 268 (743)
T TIGR00870 264 AAKEG 268 (743)
T ss_pred hhhcC
Confidence 98764
No 100
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=97.32 E-value=0.0051 Score=72.12 Aligned_cols=8 Identities=50% Similarity=1.061 Sum_probs=4.5
Q ss_pred CCCCCCCC
Q 011140 29 YASAPPFS 36 (492)
Q Consensus 29 ~~~~~~~~ 36 (492)
|.|.|-|+
T Consensus 1446 ~~ssp~~s 1453 (1605)
T KOG0260|consen 1446 YSSSPGYS 1453 (1605)
T ss_pred CCCCCCCC
Confidence 55556555
No 101
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.24 E-value=8.6e-05 Score=84.82 Aligned_cols=69 Identities=22% Similarity=0.243 Sum_probs=65.7
Q ss_pred cccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEee
Q 011140 256 SSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYP 325 (492)
Q Consensus 256 ~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIAp 325 (492)
+++++|...++++||..||++|.+|..|+||||.+...|+..++..|+++||+ ..+.|+++..+|+||.
T Consensus 662 ~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~-~~a~~~~~~~~l~~a~ 730 (785)
T KOG0521|consen 662 VAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGAD-PNAFDPDGKLPLDIAM 730 (785)
T ss_pred hhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhcccccc-ccccCccCcchhhHHh
Confidence 48999999999999999999999999999999999999999999999999999 7799999999999983
No 102
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.24 E-value=6.6e-05 Score=81.39 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=64.4
Q ss_pred CCCccccccccCCcccCCCCcccccccCCCchhhhh-hcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCC
Q 011140 232 KSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVR-AVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGI 310 (492)
Q Consensus 232 ~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr-~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv 310 (492)
.+|||+.|.+- ...+.+ ++.++...|+.+|..|.||||+|+.-||...+++|+.+||+ +
T Consensus 22 ~~lh~~~~~~~-------------------~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad-v 81 (560)
T KOG0522|consen 22 KPLHWAVVTTD-------------------SDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD-V 81 (560)
T ss_pred cccchhhhccc-------------------hhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC-c
Confidence 56999988753 134444 44556778999999999999999999999999999999999 8
Q ss_pred cccCCCCCceeEEeecc
Q 011140 311 RMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 311 ~v~DkngnnaLHIApLe 327 (492)
...|.+|.++||.|+..
T Consensus 82 ~~kN~~gWs~L~EAv~~ 98 (560)
T KOG0522|consen 82 SIKNNEGWSPLHEAVST 98 (560)
T ss_pred cccccccccHHHHHHHc
Confidence 89999999999998755
No 103
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=97.08 E-value=0.0001 Score=50.93 Aligned_cols=33 Identities=9% Similarity=0.038 Sum_probs=28.4
Q ss_pred CCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccc
Q 011140 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSG 281 (492)
Q Consensus 229 ~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~ 281 (492)
+|.|+||||+..+. .+||+.||+.||++|.+|.
T Consensus 1 dG~TpLh~A~~~~~--------------------~~~v~~Ll~~ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGH--------------------PDIVKLLLKHGADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTC--------------------HHHHHHHHHTTSCTTCBCT
T ss_pred CcccHHHHHHHHHH--------------------HHHHHHHHHCcCCCCCCCC
Confidence 47799999777664 9999999999999998873
No 104
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=97.07 E-value=9e-05 Score=65.05 Aligned_cols=74 Identities=19% Similarity=0.171 Sum_probs=62.0
Q ss_pred ccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeeccccccc
Q 011140 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLENITRC 332 (492)
Q Consensus 257 ~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe~It~c 332 (492)
.+++|..+-|+-...+|-+||..= .++||||+||.-|..+|.+.|+.+||+ ++..|+.|-|+|.-|.-|.-++|
T Consensus 9 ~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~-i~~kDKygITPLLsAvwEGH~~c 82 (117)
T KOG4214|consen 9 NVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGAN-IQDKDKYGITPLLSAVWEGHRDC 82 (117)
T ss_pred hhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccc-cCCccccCCcHHHHHHHHhhHHH
Confidence 467778888998888887776443 789999999999999999999999999 99999999999877766654444
No 105
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=96.94 E-value=0.00031 Score=81.54 Aligned_cols=74 Identities=14% Similarity=0.103 Sum_probs=67.2
Q ss_pred cccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCccc-CCCCCceeEEeeccccc
Q 011140 256 SSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRML-DPNTSRTLRIYPLENIT 330 (492)
Q Consensus 256 ~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~-DkngnnaLHIApLe~It 330 (492)
++.+.|+.++|++||+.||.+-.+|..|.++|.+|+-.||.++|++|+++-|+ +... |+.+.|+|-||.-...+
T Consensus 763 ~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~-veaQsdrtkdt~lSlacsggr~ 837 (2131)
T KOG4369|consen 763 SACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHAD-VEAQSDRTKDTMLSLACSGGRT 837 (2131)
T ss_pred ccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhh-hhhhcccccCceEEEecCCCcc
Confidence 47788999999999999999999999999999999999999999999999999 7755 88999999999877543
No 106
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=96.75 E-value=0.00033 Score=75.74 Aligned_cols=70 Identities=14% Similarity=0.125 Sum_probs=63.7
Q ss_pred cccCCCchhhhhhcccCCcccccccc-cccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeec
Q 011140 256 SSVGSGSSKIVRAVPKVDTHQDVKSG-VQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPL 326 (492)
Q Consensus 256 ~~~~~G~~~iVr~LlkagA~vn~kD~-~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApL 326 (492)
++|.+|+.++.--||..||++|.-+. .|.||||+||+.|...-+++|+--||| +...|.+|.+++.+|.-
T Consensus 139 asvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD-~~a~d~~GmtP~~~AR~ 209 (669)
T KOG0818|consen 139 SSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD-PGAQDSSGMTPVDYARQ 209 (669)
T ss_pred HHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCC-CCCCCCCCCcHHHHHHh
Confidence 57899999999999999999999876 889999999999988889999999999 88999999999877744
No 107
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=96.70 E-value=0.0003 Score=77.10 Aligned_cols=71 Identities=15% Similarity=0.165 Sum_probs=59.4
Q ss_pred cccCCCchhhhhhcccCCccccc----ccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeecc
Q 011140 256 SSVGSGSSKIVRAVPKVDTHQDV----KSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 256 ~~~~~G~~~iVr~LlkagA~vn~----kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe 327 (492)
+|+...+...+-+||.+|.++-+ .+..|.|+||||++.|++.+.++|+=.|+| +.+.|.+|+++|..|..-
T Consensus 630 ~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~d-v~~rda~g~t~l~yar~a 704 (749)
T KOG0705|consen 630 RAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVD-VMARDAHGRTALFYARQA 704 (749)
T ss_pred HHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcc-ceecccCCchhhhhHhhc
Confidence 35566677888888999985432 366889999999999999999999999999 889999999999887443
No 108
>PF13606 Ank_3: Ankyrin repeat
Probab=96.67 E-value=0.00042 Score=47.70 Aligned_cols=30 Identities=7% Similarity=0.019 Sum_probs=25.3
Q ss_pred CCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCccccc
Q 011140 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDV 278 (492)
Q Consensus 229 ~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~ 278 (492)
.|.|+||+|+..+ +.+||+.||++|+++|.
T Consensus 1 ~G~T~Lh~A~~~g--------------------~~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNG--------------------NIEIVKYLLEHGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhC--------------------CHHHHHHHHHcCCCCCC
Confidence 4789999977665 49999999999999984
No 109
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=96.65 E-value=0.0012 Score=58.84 Aligned_cols=52 Identities=25% Similarity=0.626 Sum_probs=41.6
Q ss_pred CccccccCccccCc-cccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHHH
Q 011140 428 VSKCTACGTDFSAF-VRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVID 486 (492)
Q Consensus 428 v~~C~~C~~~Fs~~-~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~~ 486 (492)
...|..|.+.|+++ ++.+-|..|++-||.+|... ...+..-+|..|.+.-.-
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-------~~~~~~WlC~vC~k~rel 106 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-------SKKEPIWLCKVCQKQREL 106 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-------TSSSCCEEEHHHHHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCc-------CCCCCCEEChhhHHHHHH
Confidence 45899999999987 58999999999999999876 234678899999986433
No 110
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.57 E-value=0.00026 Score=79.91 Aligned_cols=72 Identities=10% Similarity=0.118 Sum_probs=63.5
Q ss_pred ccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCc-ccCCCCCceeEEeeccc
Q 011140 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIR-MLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 257 ~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~-v~DkngnnaLHIApLe~ 328 (492)
||=.+.++|||+|+..|||+|.+|..|+|-||+++.....+..+++|+.|++... +.|.+|.|||.+|..+.
T Consensus 247 AAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklG 319 (782)
T KOG3676|consen 247 AACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLG 319 (782)
T ss_pred HHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhh
Confidence 5667789999999999999999999999999999998777889999999988222 77999999999997774
No 111
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=96.57 E-value=0.0012 Score=76.97 Aligned_cols=70 Identities=17% Similarity=0.082 Sum_probs=45.5
Q ss_pred ccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeecc
Q 011140 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 257 ~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe 327 (492)
+|..|+.+.|++||-.+|-|.+++..|.|+|.+|+..|+...+.+|+..++| +++.|..+++.+..|..+
T Consensus 1001 ~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad-~d~qdnr~~S~~maafRK 1070 (2131)
T KOG4369|consen 1001 PANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVAD-ADQQDNRTNSRTMAAFRK 1070 (2131)
T ss_pred ecCCCchhhhHHhhCCccceecccCCCCcccchhccCCccccchHHhhcccC-hhhhhcccccccHHHHHh
Confidence 4556666666666666666666666666666666666666666666666666 666666666655444333
No 112
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=96.50 E-value=0.056 Score=63.91 Aligned_cols=11 Identities=27% Similarity=0.196 Sum_probs=5.4
Q ss_pred CCCcccCCCCC
Q 011140 141 STPFSHVGSTV 151 (492)
Q Consensus 141 ~~~~~~~~~~~ 151 (492)
|-+||+.+++-
T Consensus 1575 spsys~~~~ys 1585 (1605)
T KOG0260|consen 1575 SPSYSTSPSYS 1585 (1605)
T ss_pred CCCccCCCCCC
Confidence 44566555443
No 113
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=96.34 E-value=0.0018 Score=77.24 Aligned_cols=34 Identities=50% Similarity=1.310 Sum_probs=32.9
Q ss_pred ccCcCCccccccCccccCccccccccccCceeccCC
Q 011140 423 VPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKC 458 (492)
Q Consensus 423 vpD~~v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kC 458 (492)
++|....+|..|+.+|.-++|+||| ||.|||.+|
T Consensus 92 m~d~s~~ec~~~~~~~~t~Rr~~~~--~gqi~~ss~ 125 (1598)
T KOG0230|consen 92 MPDSSSKECYDCEQKFETFRRKHHC--CGQIFCSSC 125 (1598)
T ss_pred CCccccchhhhhccchhhhhccccc--CccccCCcc
Confidence 7888899999999999999999999 999999999
No 114
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=95.95 E-value=0.0034 Score=75.06 Aligned_cols=32 Identities=41% Similarity=1.139 Sum_probs=27.9
Q ss_pred CCccccccCccccCccccccccccCceeccCCCCC
Q 011140 427 AVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHG 461 (492)
Q Consensus 427 ~v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ 461 (492)
...+|..|. +.++||||||.||++||++|...
T Consensus 4 s~~~~~~~~---t~~~~~~~~~~~g~~~~~~~~~~ 35 (1598)
T KOG0230|consen 4 SSNVCYDCD---TSVNRRHHCRVCGRVFCSKCQDS 35 (1598)
T ss_pred cccchhccc---cccccCCCCcccCceeccccCCC
Confidence 356888898 78899999999999999999864
No 115
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=95.79 E-value=0.048 Score=62.20 Aligned_cols=10 Identities=10% Similarity=0.308 Sum_probs=4.8
Q ss_pred cccccccCce
Q 011140 444 KHHCRNCGDI 453 (492)
Q Consensus 444 RHHCR~CG~V 453 (492)
-|||-.-.+|
T Consensus 885 l~hv~kaSrv 894 (1102)
T KOG1924|consen 885 LEHVEKASRV 894 (1102)
T ss_pred HHHHHhhccc
Confidence 4555544444
No 116
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=95.73 E-value=0.0064 Score=65.86 Aligned_cols=67 Identities=13% Similarity=0.078 Sum_probs=59.5
Q ss_pred ccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhc-CCCCCcccCCCCCceeEEe
Q 011140 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQI-GLDGIRMLDPNTSRTLRIY 324 (492)
Q Consensus 257 ~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~-GadGv~v~DkngnnaLHIA 324 (492)
++.+|+...+|-+..-|.|++.+|-..+|+||+||-.|+.+++..|+++ +++ .+..|+=|+++|--|
T Consensus 513 aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~-~~~kDRw~rtPlDdA 580 (622)
T KOG0506|consen 513 AAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVD-PDPKDRWGRTPLDDA 580 (622)
T ss_pred hhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCC-CChhhccCCCcchHh
Confidence 6677889999999999999999999999999999999999999999985 566 778899898887554
No 117
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=95.60 E-value=0.043 Score=62.60 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=9.2
Q ss_pred hhhhhhcccCCccccccccccc
Q 011140 263 SKIVRAVPKVDTHQDVKSGVQK 284 (492)
Q Consensus 263 ~~iVr~LlkagA~vn~kD~~gk 284 (492)
++|--.+|...-+|...+..++
T Consensus 716 eeik~~ILevne~vLse~~iqn 737 (1102)
T KOG1924|consen 716 EEIKNVILEVNEDVLSESMIQN 737 (1102)
T ss_pred HHHHHHHhhccHHHHHHHHHHH
Confidence 4444444444444443333343
No 118
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=95.41 E-value=0.005 Score=67.92 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=55.2
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Ga 307 (492)
|.|-|+||.|+.++ +..+..+||=.|+||-.+|.+|+|+|-.|-+.|.++..++|++.|.
T Consensus 659 ~~grt~LHLa~~~g--------------------nVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq~gc 718 (749)
T KOG0705|consen 659 GDGRTALHLAARKG--------------------NVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQYGC 718 (749)
T ss_pred CCCcchhhhhhhhc--------------------chhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHHcCC
Confidence 56778898866554 5999999999999999999999999999999999999999999997
Q ss_pred C
Q 011140 308 D 308 (492)
Q Consensus 308 d 308 (492)
-
T Consensus 719 p 719 (749)
T KOG0705|consen 719 P 719 (749)
T ss_pred C
Confidence 6
No 119
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=95.30 E-value=0.0029 Score=65.03 Aligned_cols=70 Identities=11% Similarity=0.098 Sum_probs=59.8
Q ss_pred CCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCc-ccCCCCCceeEEeecccc
Q 011140 259 GSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIR-MLDPNTSRTLRIYPLENI 329 (492)
Q Consensus 259 ~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~-v~DkngnnaLHIApLe~I 329 (492)
+.|+..-...||+---+||.+|..|-+.|--|+.+|+.++|++||+.|+| ++ -.+..++|+||+|.|-.-
T Consensus 21 ~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaD-vN~~qhg~~YTpLmFAALSGn 91 (396)
T KOG1710|consen 21 DKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGAD-VNDKQHGTLYTPLMFAALSGN 91 (396)
T ss_pred ccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCC-cCcccccccccHHHHHHHcCC
Confidence 44556666777776556999999999999999999999999999999999 55 668899999999999853
No 120
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=94.80 E-value=0.01 Score=67.82 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=46.2
Q ss_pred cccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCC-CCCceeEEeecc
Q 011140 276 QDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDP-NTSRTLRIYPLE 327 (492)
Q Consensus 276 vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~Dk-ngnnaLHIApLe 327 (492)
.|++|..|+|+|||++-.+..++++-||++|+| +.+.|. .|.++||-|-.-
T Consensus 45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGid-v~vqD~ESG~taLHRaiyy 96 (1267)
T KOG0783|consen 45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGID-VFVQDEESGYTALHRAIYY 96 (1267)
T ss_pred hhHHHhhccceeeeeeccchhHHHHHHHhcCce-eeeccccccchHhhHhhhh
Confidence 788999999999999999999999999999999 989987 689999987433
No 121
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=94.77 E-value=0.0073 Score=64.04 Aligned_cols=65 Identities=12% Similarity=0.086 Sum_probs=54.9
Q ss_pred ccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeE
Q 011140 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLR 322 (492)
Q Consensus 257 ~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLH 322 (492)
|..+|+.+.||.|+.-|..||.+|..-..||-+|+--||..+|..|||+||- -.----+|.+++.
T Consensus 43 acR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi-C~rdtf~G~RC~Y 107 (516)
T KOG0511|consen 43 ACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI-CSRDTFDGDRCHY 107 (516)
T ss_pred HhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc-ccccccCcchhhh
Confidence 6788999999999999999999999999999999999999999999999987 2211224555543
No 122
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=94.47 E-value=0.012 Score=64.16 Aligned_cols=60 Identities=8% Similarity=0.030 Sum_probs=51.7
Q ss_pred CcCCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhc
Q 011140 226 ARGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQI 305 (492)
Q Consensus 226 ~~g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~ 305 (492)
--++|.|+||.||. .|...-|++|...|||++..|..|.||+-+|-..||.++.+-|+++
T Consensus 163 hpekg~TpLHvAAk--------------------~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~laeRl~e~ 222 (669)
T KOG0818|consen 163 HPEKGNTPLHVAAK--------------------AGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELAERLVEI 222 (669)
T ss_pred CcccCCchhHHHHh--------------------ccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHHHHHHHH
Confidence 35788999998654 4458889999999999999999999999999999999987777763
No 123
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=94.21 E-value=0.0087 Score=65.99 Aligned_cols=66 Identities=14% Similarity=0.193 Sum_probs=48.4
Q ss_pred ccCCCchhhhhhcccCCcc--cccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEE
Q 011140 257 SVGSGSSKIVRAVPKVDTH--QDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRI 323 (492)
Q Consensus 257 ~~~~G~~~iVr~LlkagA~--vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHI 323 (492)
+|.+|+.+|||.||.+|-. .+..|..|.|.||-||-.++-.++.+|++.||. +...|.+|.|+..-
T Consensus 906 a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagas-l~ktd~kg~tp~er 973 (1004)
T KOG0782|consen 906 AAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGAS-LRKTDSKGKTPQER 973 (1004)
T ss_pred HHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchh-heecccCCCChHHH
Confidence 5667778888888777763 344567788888888877777788888888887 77777777776533
No 124
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=94.18 E-value=0.024 Score=66.06 Aligned_cols=61 Identities=13% Similarity=0.075 Sum_probs=48.9
Q ss_pred CCCchhhhhhc-ccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCc
Q 011140 259 GSGSSKIVRAV-PKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSR 319 (492)
Q Consensus 259 ~~G~~~iVr~L-lkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~Dkngnn 319 (492)
+.++.+++.+| +-+|..++++|..|+||||||+..|+..++..|++.|++.--+.|+...+
T Consensus 616 a~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~ 677 (975)
T KOG0520|consen 616 AALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPET 677 (975)
T ss_pred hhcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCC
Confidence 44455555555 45677899999999999999999999999999999998865577775444
No 125
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]
Probab=94.17 E-value=0.021 Score=66.95 Aligned_cols=57 Identities=23% Similarity=0.357 Sum_probs=47.7
Q ss_pred CCCCCcccCcCCccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHHH
Q 011140 417 EEKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVID 486 (492)
Q Consensus 417 e~~p~WvpD~~v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~~ 486 (492)
+.+..|++|..+..|+.|.+.|.++.|||||| |.++ +. ..+.+..|+|..|.+.+-.
T Consensus 646 e~ksVw~aDg~aPng~la~t~~~~~~e~~hsr--~~ls----------~~-~~s~~~~~~~n~t~s~~rn 702 (1287)
T KOG1841|consen 646 EVKSVWFADGIAPNGELAETRFTFTGERHHSR--GKLS----------LL-YSSRKEARPCNITHSVLRN 702 (1287)
T ss_pred eecceeccCCcCCCceecccceeeeccccccc--cccc----------cc-ccccccCCCCcccCccchh
Confidence 56899999999999999999999999999999 8877 11 2346788999999876543
No 126
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=93.30 E-value=0.017 Score=56.55 Aligned_cols=54 Identities=9% Similarity=0.078 Sum_probs=48.0
Q ss_pred CcccccccccccceEEEeeccCCchhhHHHHhcC-CCCCcccCCCCCceeEEeecc
Q 011140 273 DTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG-LDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 273 gA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~G-adGv~v~DkngnnaLHIApLe 327 (492)
+.++|++|..|+|+|..|+..|..+.|..|++.| +. +.+.|..++.++.||-..
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~-vgv~d~ssldaaqlaek~ 56 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAF-VGVTDESSLDAAQLAEKG 56 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcchhHHHHHhccCccc-ccccccccchHHHHHHhc
Confidence 5678999999999999999999999999999999 66 999999999998887433
No 127
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=92.82 E-value=0.025 Score=58.16 Aligned_cols=65 Identities=20% Similarity=0.399 Sum_probs=49.6
Q ss_pred CCCcccCcCCccccccCccccCccccccccccCceeccCCCCCcE---eccc---CCCCCceecccchHHH
Q 011140 419 KDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI---ALTA---DANAQPVRVCDRCMVG 483 (492)
Q Consensus 419 ~p~WvpD~~v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri---~Lp~---~~s~kpvRVC~~Cy~~ 483 (492)
.+.|+-+.++..|..|...|.+..|+|||+.||+|||..|+..+. .+-. +-.....++|..|...
T Consensus 11 ~~~~~~~~e~~s~~~~~~e~~~~~r~~~~~~~grv~~~q~~~~k~~rk~~q~r~~~l~~D~~~~~~~~~~~ 81 (288)
T KOG1729|consen 11 MVDWQANSEANSCRNCKVEFCFGRRGHPCRECGRVLCRQGTLVKRCRKKLQSRSFFLFNDILVYGNIVSDN 81 (288)
T ss_pred hHHHHHhccchhhhhhcccchhhhccCcccccchhhhhhhhhHHHHhcccccccccccccchhhcccccCH
Confidence 467888888999999999999999999999999999999988211 1110 1123456788888766
No 128
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.64 E-value=0.0053 Score=65.35 Aligned_cols=66 Identities=23% Similarity=0.564 Sum_probs=55.4
Q ss_pred CCCcccCcCCccccccCccccCccccccccc--cCceeccCCCCCcEecccCCCCCceecccchHHHHHH
Q 011140 419 KDHWVPDEAVSKCTACGTDFSAFVRKHHCRN--CGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVID 486 (492)
Q Consensus 419 ~p~WvpD~~v~~C~~C~~~Fs~~~RRHHCR~--CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~~ 486 (492)
...|.-+.++..|..|-.+|..+.-+-||-+ |++|||-.|++..+ +...+.++..||+.|++.+..
T Consensus 459 ~le~ql~~~ve~c~~~~aS~~slk~e~erl~qq~eqi~~~~~~Katv--p~l~~e~~akv~rlq~eL~~s 526 (542)
T KOG0993|consen 459 ELEWQLDDDVEQCSNCDASFASLKVEPERLHQQCEQIFCMNCLKATV--PSLPNERPAKVCRLQHELLNS 526 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhHHHhhc--ccccccchHHHHHHHHHHhhh
Confidence 4568878888999999999999999999998 99999999998665 444456899999999987643
No 129
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=92.51 E-value=0.033 Score=33.73 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=23.8
Q ss_pred ccceEEEeeccCCchhhHHHHhcCCC
Q 011140 283 QKFRVKLLAESGGQSTMDVLCQIGLD 308 (492)
Q Consensus 283 gkTpLHlAa~~G~~~iv~vLlq~Gad 308 (492)
++|+||++++.++.++++.|++.|.+
T Consensus 2 ~~~~l~~~~~~~~~~~~~~ll~~~~~ 27 (30)
T smart00248 2 GRTPLHLAAENGNLEVVKLLLDKGAD 27 (30)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 68999999999999999999999886
No 130
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=92.17 E-value=0.05 Score=62.77 Aligned_cols=60 Identities=15% Similarity=0.153 Sum_probs=50.4
Q ss_pred ccCCccccccc--ccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeeccccc
Q 011140 270 PKVDTHQDVKS--GVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLENIT 330 (492)
Q Consensus 270 lkagA~vn~kD--~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe~It 330 (492)
+.+++++|..+ ..|.|.||+|...|...+++.||++|++ +++.|..|+++||++.....+
T Consensus 641 ~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~g~~ 702 (785)
T KOG0521|consen 641 LAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGAD-VNALDSKGRTPLHHATASGHT 702 (785)
T ss_pred hcchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCc-chhhhccCCCcchhhhhhccc
Confidence 34455555432 3679999999999999999999999999 999999999999999888654
No 131
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=92.11 E-value=0.038 Score=60.65 Aligned_cols=47 Identities=11% Similarity=0.129 Sum_probs=39.3
Q ss_pred ccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHH
Q 011140 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLC 303 (492)
Q Consensus 257 ~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLl 303 (492)
+|-.|+...++.|+.|||++-+++..|+++||-|+-.|+..|+..++
T Consensus 62 AV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vl 108 (560)
T KOG0522|consen 62 AVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVL 108 (560)
T ss_pred HHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHH
Confidence 34455699999999999999999999999999999999876544333
No 132
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.50 E-value=0.02 Score=55.21 Aligned_cols=51 Identities=22% Similarity=0.531 Sum_probs=36.5
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHHHhh
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVIDWL 488 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~~r~ 488 (492)
.-.|.+|-..|.-. -----+||+|||.+|.+.- .+..++|-.|.++|+.+.
T Consensus 131 ~~~CPiCl~~~sek--~~vsTkCGHvFC~~Cik~a--------lk~~~~CP~C~kkIt~k~ 181 (187)
T KOG0320|consen 131 TYKCPICLDSVSEK--VPVSTKCGHVFCSQCIKDA--------LKNTNKCPTCRKKITHKQ 181 (187)
T ss_pred ccCCCceecchhhc--cccccccchhHHHHHHHHH--------HHhCCCCCCcccccchhh
Confidence 35788887665432 1244689999999998743 356789999998887653
No 133
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=91.21 E-value=0.047 Score=53.52 Aligned_cols=57 Identities=12% Similarity=0.036 Sum_probs=50.6
Q ss_pred CCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCC-cccccccccccceEEEeeccCCchhhHHHHhcC
Q 011140 230 VPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVD-THQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (492)
Q Consensus 230 ~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~Llkag-A~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~G 306 (492)
|||+||+||-.. +.+.|..|+..| |+|-+.|..+.+++.||-++|+...|..|-++-
T Consensus 12 gWTalmcaa~eg--------------------~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~ 69 (223)
T KOG2384|consen 12 GWTALMCAAMEG--------------------SNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEND 69 (223)
T ss_pred cchHHHHHhhhc--------------------chhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHh
Confidence 689999866544 588999999999 899999999999999999999999999998873
No 134
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=84.08 E-value=27 Score=39.04 Aligned_cols=9 Identities=44% Similarity=0.789 Sum_probs=3.9
Q ss_pred cCCCCCCCC
Q 011140 12 QYPNPNPNP 20 (492)
Q Consensus 12 ~~~~~~~~~ 20 (492)
|+.-|+|.|
T Consensus 316 q~~~P~PPP 324 (569)
T KOG3671|consen 316 QKKRPPPPP 324 (569)
T ss_pred ccCCCCCcC
Confidence 444444443
No 135
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=82.98 E-value=0.43 Score=52.47 Aligned_cols=62 Identities=10% Similarity=0.078 Sum_probs=51.4
Q ss_pred hhhhhhcccCCccccc------ccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEee
Q 011140 263 SKIVRAVPKVDTHQDV------KSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYP 325 (492)
Q Consensus 263 ~~iVr~LlkagA~vn~------kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIAp 325 (492)
...|+.|.+.++..|+ ++..--|+||.|+.+|.-..|..||++|+| .-+.|..|.|+--++.
T Consensus 404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~D-p~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCD-PSTKDGAGRTPYSLSA 471 (591)
T ss_pred hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCC-chhcccCCCCcccccc
Confidence 4456667778887774 345668999999999999999999999999 7799999999987765
No 136
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.72 E-value=1.3 Score=40.01 Aligned_cols=55 Identities=18% Similarity=0.470 Sum_probs=38.2
Q ss_pred CCCcccCcCCccccccCccccCc----------cccccccccCceeccCCCCCcEecccCCCCCceecccchH
Q 011140 419 KDHWVPDEAVSKCTACGTDFSAF----------VRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCM 481 (492)
Q Consensus 419 ~p~WvpD~~v~~C~~C~~~Fs~~----------~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy 481 (492)
+..|........|..|++.|... .-|.-|..|..+||..|=.+- .+.++.|-.|.
T Consensus 46 ev~~~~~~~~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fi--------He~Lh~CPGC~ 110 (112)
T TIGR00622 46 EIPLEEYNGSRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFV--------HESLHCCPGCI 110 (112)
T ss_pred cccccccCCCCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhh--------hhhccCCcCCC
Confidence 34565554456799999999743 346789999999999995432 23455566664
No 137
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=81.65 E-value=0.39 Score=47.65 Aligned_cols=33 Identities=36% Similarity=0.870 Sum_probs=23.2
Q ss_pred cCcCCccccccCccccC---c---------cccccccccCceecc
Q 011140 424 PDEAVSKCTACGTDFSA---F---------VRKHHCRNCGDIFCD 456 (492)
Q Consensus 424 pD~~v~~C~~C~~~Fs~---~---------~RRHHCR~CG~VfC~ 456 (492)
+|.+.-.|..|++.|++ + .|||-|+.||+-|=+
T Consensus 113 sd~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfnd 157 (267)
T KOG3576|consen 113 SDQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFND 157 (267)
T ss_pred CCCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccc
Confidence 44556788888888886 2 257778888887633
No 138
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=80.15 E-value=0.86 Score=43.09 Aligned_cols=25 Identities=36% Similarity=0.907 Sum_probs=19.4
Q ss_pred cccccCcccc------------CccccccccccCcee
Q 011140 430 KCTACGTDFS------------AFVRKHHCRNCGDIF 454 (492)
Q Consensus 430 ~C~~C~~~Fs------------~~~RRHHCR~CG~Vf 454 (492)
.|..|+..++ ...|+++|..||.-|
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f 38 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRF 38 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcc
Confidence 5889988772 245679999999877
No 139
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=78.62 E-value=1 Score=53.15 Aligned_cols=79 Identities=19% Similarity=0.237 Sum_probs=55.6
Q ss_pred CCCCCceEEe-eC-C---ccccccCcC--------CCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCC
Q 011140 207 DGYGDGVYAY-EG-G---KLEPYGARG--------TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVD 273 (492)
Q Consensus 207 ~~~~~~~~~~-~~-~---~~~~~~~~g--------~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~Llkag 273 (492)
|.-|.||+-+ -+ | .+.||.+-| .|+|+||||+|.+- +++|..|+..|
T Consensus 605 d~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~--------------------e~l~a~l~~lg 664 (975)
T KOG0520|consen 605 DRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGR--------------------EKLVASLIELG 664 (975)
T ss_pred cccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchHhhcCH--------------------HHHHHHHHHhc
Confidence 3446666655 22 2 455665544 57899999888764 99999999999
Q ss_pred cccccc-c-----ccccceEEEeeccCCchhhHHHHhc
Q 011140 274 THQDVK-S-----GVQKFRVKLLAESGGQSTMDVLCQI 305 (492)
Q Consensus 274 A~vn~k-D-----~~gkTpLHlAa~~G~~~iv~vLlq~ 305 (492)
|+-++. | ..|+|+-.+|..+|+..|...|-+.
T Consensus 665 a~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~ 702 (975)
T KOG0520|consen 665 ADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK 702 (975)
T ss_pred cccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence 877643 3 3577888889889988776655553
No 140
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=77.66 E-value=0.66 Score=36.36 Aligned_cols=44 Identities=23% Similarity=0.594 Sum_probs=25.7
Q ss_pred cccccCccccCc------cccccccccCceeccCCCCCcEecccCCCCCceecccchH
Q 011140 430 KCTACGTDFSAF------VRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCM 481 (492)
Q Consensus 430 ~C~~C~~~Fs~~------~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy 481 (492)
.|..|.+.|... ..+..|..|+.+||..|=.+ ..+.+..|-.|.
T Consensus 1 ~CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~f--------iHE~LH~CPGC~ 50 (51)
T PF07975_consen 1 YCFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVF--------IHETLHNCPGCE 50 (51)
T ss_dssp EETTTTEE-TTS-------EEE--TTTT--B-HHHHHT--------TTTTS-SSSTT-
T ss_pred CCccCCCCCCCcccccccCCeEECCCCCCccccCcChh--------hhccccCCcCCC
Confidence 378899999876 36899999999999999432 134566776663
No 141
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=77.46 E-value=1.4 Score=32.45 Aligned_cols=26 Identities=31% Similarity=0.967 Sum_probs=19.4
Q ss_pred ccccCccccCccccccccccCceeccCC
Q 011140 431 CTACGTDFSAFVRKHHCRNCGDIFCDKC 458 (492)
Q Consensus 431 C~~C~~~Fs~~~RRHHCR~CG~VfC~kC 458 (492)
|..|++.-.++ -..|+.|+++||.+.
T Consensus 1 C~~C~~~~~l~--~f~C~~C~~~FC~~H 26 (39)
T smart00154 1 CHFCRKKVGLT--GFKCRHCGNLFCGEH 26 (39)
T ss_pred CcccCCccccc--CeECCccCCcccccc
Confidence 66787765554 577999999998763
No 142
>PHA02768 hypothetical protein; Provisional
Probab=77.22 E-value=1 Score=35.89 Aligned_cols=25 Identities=36% Similarity=0.749 Sum_probs=18.9
Q ss_pred cccccCccccCc------ccccc----ccccCcee
Q 011140 430 KCTACGTDFSAF------VRKHH----CRNCGDIF 454 (492)
Q Consensus 430 ~C~~C~~~Fs~~------~RRHH----CR~CG~Vf 454 (492)
.|..|++.|+.. .|+|+ |-.||++|
T Consensus 7 ~C~~CGK~Fs~~~~L~~H~r~H~k~~kc~~C~k~f 41 (55)
T PHA02768 7 ECPICGEIYIKRKSMITHLRKHNTNLKLSNCKRIS 41 (55)
T ss_pred CcchhCCeeccHHHHHHHHHhcCCcccCCccccee
Confidence 799999999974 34554 77777776
No 143
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=77.11 E-value=1.1e+02 Score=33.95 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=7.1
Q ss_pred CCCCCCCCCCCCCCCCC
Q 011140 85 SLSSFNPIPPQQFPPYD 101 (492)
Q Consensus 85 ~~~~~~~~~~~~~~~~~ 101 (492)
++-.++|+.+++..||.
T Consensus 345 sp~~pppp~pp~~~p~~ 361 (518)
T KOG1830|consen 345 SPIVPPPPSPPSTIPFV 361 (518)
T ss_pred CCCCCCCCCCCCCCCCc
Confidence 33334444444444443
No 144
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=77.09 E-value=1.4 Score=31.75 Aligned_cols=25 Identities=32% Similarity=0.891 Sum_probs=19.4
Q ss_pred cccccCccccCc-------cccccccccCcee
Q 011140 430 KCTACGTDFSAF-------VRKHHCRNCGDIF 454 (492)
Q Consensus 430 ~C~~C~~~Fs~~-------~RRHHCR~CG~Vf 454 (492)
.|..|+++|.+- .++--|.+||.+|
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVF 35 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEe
Confidence 688999988873 3577788888875
No 145
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.79 E-value=0.45 Score=49.30 Aligned_cols=48 Identities=29% Similarity=0.821 Sum_probs=39.8
Q ss_pred cCCccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHH
Q 011140 426 EAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMV 482 (492)
Q Consensus 426 ~~v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~ 482 (492)
.+...|..|+..|..+.|||-|--|-+-||..||.. ..-.|.|..|..
T Consensus 42 ~~~p~ckacg~~f~~~~~k~~c~dckk~fc~tcs~v---------~~~lr~c~~c~r 89 (350)
T KOG4275|consen 42 SQAPHCKACGEEFEDAQSKSDCEDCKKEFCATCSRV---------SISLRTCTSCRR 89 (350)
T ss_pred cccchhhhhchhHhhhhhhhhhhhhhHHHHHHHHHh---------cccchhhhHHHH
Confidence 345589999999999999999999999999999942 235677888864
No 146
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.76 E-value=29 Score=40.85 Aligned_cols=14 Identities=21% Similarity=0.480 Sum_probs=10.1
Q ss_pred CCCceecccchHHH
Q 011140 470 NAQPVRVCDRCMVG 483 (492)
Q Consensus 470 s~kpvRVC~~Cy~~ 483 (492)
+++.+||=..|...
T Consensus 604 GERRIRV~T~~lpt 617 (887)
T KOG1985|consen 604 GERRIRVHTLCLPT 617 (887)
T ss_pred CceeEEEEEeeccc
Confidence 46788887777654
No 147
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.63 E-value=0.52 Score=48.57 Aligned_cols=46 Identities=24% Similarity=0.518 Sum_probs=30.5
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHH
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVI 485 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~ 485 (492)
..+|..|-. ..+---|-.||+|||+.|...... .+.. |-.|-+.++
T Consensus 239 ~~kC~LCLe----~~~~pSaTpCGHiFCWsCI~~w~~------ek~e--CPlCR~~~~ 284 (293)
T KOG0317|consen 239 TRKCSLCLE----NRSNPSATPCGHIFCWSCILEWCS------EKAE--CPLCREKFQ 284 (293)
T ss_pred CCceEEEec----CCCCCCcCcCcchHHHHHHHHHHc------cccC--CCcccccCC
Confidence 468999843 122334999999999999875532 2222 888876553
No 148
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=74.20 E-value=2 Score=38.36 Aligned_cols=26 Identities=31% Similarity=0.901 Sum_probs=21.6
Q ss_pred ccccccCccccCccccc-cccccCcee
Q 011140 429 SKCTACGTDFSAFVRKH-HCRNCGDIF 454 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~RRH-HCR~CG~Vf 454 (492)
..|..|+++|=-|+|.. +|-.||.+|
T Consensus 10 R~Cp~CG~kFYDLnk~PivCP~CG~~~ 36 (108)
T PF09538_consen 10 RTCPSCGAKFYDLNKDPIVCPKCGTEF 36 (108)
T ss_pred ccCCCCcchhccCCCCCccCCCCCCcc
Confidence 48999999999888854 488888876
No 149
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=73.48 E-value=2 Score=31.03 Aligned_cols=26 Identities=38% Similarity=0.879 Sum_probs=19.8
Q ss_pred ccccccCccccCc-------cccccccccCcee
Q 011140 429 SKCTACGTDFSAF-------VRKHHCRNCGDIF 454 (492)
Q Consensus 429 ~~C~~C~~~Fs~~-------~RRHHCR~CG~Vf 454 (492)
..|..|++.|.+- .++.-|-+||.+|
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f 35 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVF 35 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEe
Confidence 3699999988874 3577788888776
No 150
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=72.43 E-value=1.4 Score=48.58 Aligned_cols=50 Identities=10% Similarity=0.111 Sum_probs=41.1
Q ss_pred cccCCCchhhhhhccc-CCcccccccccccceEEEeeccCCchhhHHHHhc
Q 011140 256 SSVGSGSSKIVRAVPK-VDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQI 305 (492)
Q Consensus 256 ~~~~~G~~~iVr~Llk-agA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~ 305 (492)
+||+-|++++|+.||. .+.+.+.+|..|+|||--|..=+|.+++.+|-+.
T Consensus 545 vAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~ 595 (622)
T KOG0506|consen 545 VAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEA 595 (622)
T ss_pred eecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHHHHHHHHHH
Confidence 3666677999999875 5778999999999999999999998877766553
No 151
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.20 E-value=1 Score=49.56 Aligned_cols=51 Identities=27% Similarity=0.513 Sum_probs=37.9
Q ss_pred ccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHHH
Q 011140 429 SKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVID 486 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~~ 486 (492)
..|.+|-..+.+-.|- .||+|||..|.-..+... ..+.-+-|-.|+..|.-
T Consensus 187 ~~CPICL~~~~~p~~t----~CGHiFC~~CiLqy~~~s---~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 187 MQCPICLEPPSVPVRT----NCGHIFCGPCILQYWNYS---AIKGPCSCPICRSTITL 237 (513)
T ss_pred CcCCcccCCCCccccc----ccCceeeHHHHHHHHhhh---cccCCccCCchhhhccc
Confidence 4799998776655443 399999999987665544 24566889999998754
No 152
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=69.58 E-value=1.2 Score=32.89 Aligned_cols=33 Identities=30% Similarity=0.781 Sum_probs=23.4
Q ss_pred cccccCccccCccccccccccCceeccCCCCCcE
Q 011140 430 KCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI 463 (492)
Q Consensus 430 ~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri 463 (492)
.|..|.+.| .-.++-.=-.||.+||..|.....
T Consensus 1 ~C~~C~~~~-~~~~~~~l~~CgH~~C~~C~~~~~ 33 (44)
T PF14634_consen 1 HCNICFEKY-SEERRPRLTSCGHIFCEKCLKKLK 33 (44)
T ss_pred CCcCcCccc-cCCCCeEEcccCCHHHHHHHHhhc
Confidence 477888888 223334445899999999988654
No 153
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=69.31 E-value=3.5 Score=43.15 Aligned_cols=57 Identities=25% Similarity=0.564 Sum_probs=35.7
Q ss_pred CccccccCcc--ccCc-------cccccccccC------ceeccCCCCCcE-e---cccCCCCCceecccchHHHH
Q 011140 428 VSKCTACGTD--FSAF-------VRKHHCRNCG------DIFCDKCTHGRI-A---LTADANAQPVRVCDRCMVGV 484 (492)
Q Consensus 428 v~~C~~C~~~--Fs~~-------~RRHHCR~CG------~VfC~kCS~~ri-~---Lp~~~s~kpvRVC~~Cy~~L 484 (492)
...|..|+.. .+++ .|.-||-.|+ ++-|..|-+.+. . +........+-||..|..-|
T Consensus 187 ~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~~~l~y~~~~~~~~~~r~e~C~~C~~Yl 262 (309)
T PRK03564 187 RQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQSGKLHYWSLDSEQAAVKAESCGDCGTYL 262 (309)
T ss_pred CCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCCCCceeeeeecCCCcceEeeecccccccc
Confidence 4589999865 2322 4788999998 568888887531 1 11111123445699997644
No 154
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=69.07 E-value=1.2 Score=43.75 Aligned_cols=56 Identities=20% Similarity=0.401 Sum_probs=35.6
Q ss_pred CCccccccCccccCccccccccccCceeccCCCCCcEeccc--------CCCCCceecccchHHHHHH
Q 011140 427 AVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTA--------DANAQPVRVCDRCMVGVID 486 (492)
Q Consensus 427 ~v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~--------~~s~kpvRVC~~Cy~~L~~ 486 (492)
+.-.|.+|...|..- .--.||++||..|......... ....+....|-.|...|+.
T Consensus 17 ~~~~CpICld~~~dP----VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 17 GDFDCNICLDQVRDP----VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CccCCccCCCcCCCc----EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 345899998766422 3357999999999975422110 0112345689999887654
No 155
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=68.78 E-value=2 Score=44.97 Aligned_cols=49 Identities=22% Similarity=0.578 Sum_probs=36.9
Q ss_pred CCccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHHHhhh
Q 011140 427 AVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVIDWLI 489 (492)
Q Consensus 427 ~v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~~r~~ 489 (492)
.+..|..|....-+..|..-| -.|||-+|... ...+.|-.|-+.+ +|+|
T Consensus 89 ~VHfCd~Cd~PI~IYGRmIPC---kHvFCl~CAr~----------~~dK~Cp~C~d~V-qrIe 137 (389)
T KOG2932|consen 89 RVHFCDRCDFPIAIYGRMIPC---KHVFCLECARS----------DSDKICPLCDDRV-QRIE 137 (389)
T ss_pred ceEeecccCCcceeeeccccc---chhhhhhhhhc----------CccccCcCcccHH-HHHH
Confidence 378999999988888887754 55899999652 3477888888877 3443
No 156
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.46 E-value=1.1e+02 Score=37.28 Aligned_cols=20 Identities=35% Similarity=0.391 Sum_probs=9.1
Q ss_pred hHHHHhcCCCCCcccCCCCCcee
Q 011140 299 MDVLCQIGLDGIRMLDPNTSRTL 321 (492)
Q Consensus 299 v~vLlq~GadGv~v~DkngnnaL 321 (492)
.+.|+++..- ..|+...+.|
T Consensus 955 ~e~~~~r~~a---~~~~~~krkl 974 (1049)
T KOG0307|consen 955 LEELLQRCSA---RTDPQTKRKL 974 (1049)
T ss_pred HHHHHHHhhc---cCCHHHHHHH
Confidence 4555554432 3345554443
No 157
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=66.36 E-value=6.3 Score=41.18 Aligned_cols=58 Identities=28% Similarity=0.595 Sum_probs=35.7
Q ss_pred CccccccCccc--cC--------ccccccccccC------ceeccCCCCCcE----ecccCCCCCcee--cccchHHHHH
Q 011140 428 VSKCTACGTDF--SA--------FVRKHHCRNCG------DIFCDKCTHGRI----ALTADANAQPVR--VCDRCMVGVI 485 (492)
Q Consensus 428 v~~C~~C~~~F--s~--------~~RRHHCR~CG------~VfC~kCS~~ri----~Lp~~~s~kpvR--VC~~Cy~~L~ 485 (492)
...|..|+..= +. -.|..||..|+ ++-|..|-+.+- .+........+| ||..|..-|+
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~~~l~y~~~e~~~~~~~~r~e~C~~C~~YlK 263 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEESKHLAYLSLEHDAEKAVLKAETCDSCQGYLK 263 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCCCceeeEeecCCCCCcceEEeeccccccchh
Confidence 45899998642 21 23788999998 568888887541 121110122455 7999976443
No 158
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=64.71 E-value=5.2 Score=30.68 Aligned_cols=33 Identities=27% Similarity=0.592 Sum_probs=20.3
Q ss_pred Cccccc--cCccccCccc----cccccccCceeccCCCC
Q 011140 428 VSKCTA--CGTDFSAFVR----KHHCRNCGDIFCDKCTH 460 (492)
Q Consensus 428 v~~C~~--C~~~Fs~~~R----RHHCR~CG~VfC~kCS~ 460 (492)
...|.. |+..|..-.. ...|..||..||..|..
T Consensus 18 ~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~ 56 (64)
T PF01485_consen 18 IRWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGE 56 (64)
T ss_dssp CC--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTS
T ss_pred ccCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCc
Confidence 346765 8877765443 26799999999999976
No 159
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=64.63 E-value=0.83 Score=52.22 Aligned_cols=45 Identities=29% Similarity=0.828 Sum_probs=32.3
Q ss_pred CCccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHH
Q 011140 427 AVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMV 482 (492)
Q Consensus 427 ~v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~ 482 (492)
..-.|..|.+++.-. -=-+||++||..|...+. ....|-|..|-.
T Consensus 642 ~~LkCs~Cn~R~Kd~----vI~kC~H~FC~~Cvq~r~-------etRqRKCP~Cn~ 686 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDA----VITKCGHVFCEECVQTRY-------ETRQRKCPKCNA 686 (698)
T ss_pred hceeCCCccCchhhH----HHHhcchHHHHHHHHHHH-------HHhcCCCCCCCC
Confidence 356899998655421 124899999999998763 347788888853
No 160
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=64.43 E-value=4.1 Score=37.67 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=21.4
Q ss_pred ccccccCccccCccc-cccccccCcee
Q 011140 429 SKCTACGTDFSAFVR-KHHCRNCGDIF 454 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~R-RHHCR~CG~Vf 454 (492)
..|..|+++|=-|+| -.+|-.||.++
T Consensus 10 r~Cp~cg~kFYDLnk~p~vcP~cg~~~ 36 (129)
T TIGR02300 10 RICPNTGSKFYDLNRRPAVSPYTGEQF 36 (129)
T ss_pred ccCCCcCccccccCCCCccCCCcCCcc
Confidence 489999999987776 56788888876
No 161
>COG2126 RPL37A Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]
Probab=63.48 E-value=3.4 Score=33.45 Aligned_cols=22 Identities=45% Similarity=0.981 Sum_probs=9.8
Q ss_pred cccccCccccCccccccccccCc
Q 011140 430 KCTACGTDFSAFVRKHHCRNCGD 452 (492)
Q Consensus 430 ~C~~C~~~Fs~~~RRHHCR~CG~ 452 (492)
.|-.|++. ++-.+|.-|..||.
T Consensus 18 ~CRRCGr~-syhv~k~~CaaCGf 39 (61)
T COG2126 18 RCRRCGRR-SYHVRKKYCAACGF 39 (61)
T ss_pred hhhhccch-heeeccceecccCC
Confidence 45555421 12234555555554
No 162
>KOG3896 consensus Dynactin, subunit p62 [Cell motility]
Probab=62.96 E-value=2.4 Score=44.87 Aligned_cols=30 Identities=30% Similarity=0.795 Sum_probs=25.9
Q ss_pred ccCccccCccccccccccCceeccCCCCCcE
Q 011140 433 ACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI 463 (492)
Q Consensus 433 ~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri 463 (492)
.|+ .|.-+.--..||+|-++-|..|+.+.+
T Consensus 14 ~cg-~~~pl~~L~FCRyC~klrc~~Cv~hEv 43 (449)
T KOG3896|consen 14 TCG-KFRPLPDLVFCRYCFKLRCDDCVLHEV 43 (449)
T ss_pred ecc-ccccccceeeeeccccccccccccccc
Confidence 566 688888889999999999999998865
No 163
>PF12773 DZR: Double zinc ribbon
Probab=62.85 E-value=5 Score=30.09 Aligned_cols=28 Identities=32% Similarity=0.686 Sum_probs=18.8
Q ss_pred cCCccccccCcccc-CccccccccccCce
Q 011140 426 EAVSKCTACGTDFS-AFVRKHHCRNCGDI 453 (492)
Q Consensus 426 ~~v~~C~~C~~~Fs-~~~RRHHCR~CG~V 453 (492)
.++..|..|++.+. .......|..||..
T Consensus 10 ~~~~fC~~CG~~l~~~~~~~~~C~~Cg~~ 38 (50)
T PF12773_consen 10 DDAKFCPHCGTPLPPPDQSKKICPNCGAE 38 (50)
T ss_pred ccccCChhhcCChhhccCCCCCCcCCcCC
Confidence 34678999988776 23345667777774
No 164
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=61.58 E-value=0.8 Score=31.93 Aligned_cols=30 Identities=27% Similarity=0.738 Sum_probs=21.4
Q ss_pred cccccCccccCccccccccccCceeccCCCCCc
Q 011140 430 KCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGR 462 (492)
Q Consensus 430 ~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~r 462 (492)
.|.+|...| ........||..||..|....
T Consensus 1 ~C~iC~~~~---~~~~~~~~C~H~~c~~C~~~~ 30 (45)
T cd00162 1 ECPICLEEF---REPVVLLPCGHVFCRSCIDKW 30 (45)
T ss_pred CCCcCchhh---hCceEecCCCChhcHHHHHHH
Confidence 377887776 333445569999999998754
No 165
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.58 E-value=4.7 Score=37.78 Aligned_cols=49 Identities=31% Similarity=0.778 Sum_probs=36.9
Q ss_pred cccccC-ccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHH
Q 011140 430 KCTACG-TDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVG 483 (492)
Q Consensus 430 ~C~~C~-~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~ 483 (492)
.|.+|. ++|.--. -|.|.-|---||.+|.- ++.|- +++-.-||+.|-..
T Consensus 67 tC~IC~KTKFADG~-GH~C~YCq~r~CARCGG-rv~lr---sNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 67 TCGICHKTKFADGC-GHNCSYCQTRFCARCGG-RVSLR---SNKVMWVCNLCRKQ 116 (169)
T ss_pred chhhhhhccccccc-CcccchhhhhHHHhcCC-eeeec---cCceEEeccCCcHH
Confidence 799996 5665433 59999999999999976 44443 45677899999764
No 166
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=59.29 E-value=5 Score=36.86 Aligned_cols=26 Identities=31% Similarity=0.703 Sum_probs=19.4
Q ss_pred CCccccccCccccCccccccccccCcee
Q 011140 427 AVSKCTACGTDFSAFVRKHHCRNCGDIF 454 (492)
Q Consensus 427 ~v~~C~~C~~~Fs~~~RRHHCR~CG~Vf 454 (492)
....|..|... .-.|-|||+.||+.+
T Consensus 47 ~~~~C~~C~~~--kp~Rs~HC~~C~~CV 72 (174)
T PF01529_consen 47 ELKYCSTCKII--KPPRSHHCRVCNRCV 72 (174)
T ss_pred CCEECcccCCc--CCCcceecccccccc
Confidence 35678888652 456899999998764
No 167
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=58.85 E-value=2.4 Score=44.33 Aligned_cols=47 Identities=19% Similarity=0.511 Sum_probs=29.4
Q ss_pred ccccccCcc--ccCccc-cccccccCceeccCCCCCcEecccCCCCCceecccchHHHH
Q 011140 429 SKCTACGTD--FSAFVR-KHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGV 484 (492)
Q Consensus 429 ~~C~~C~~~--Fs~~~R-RHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L 484 (492)
..|..|.+. ++.-.+ ..+ .||+.||..|...-+.. ....|..|...|
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~--~CGH~~C~sCv~~l~~~-------~~~~CP~C~~~l 53 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVN--VCGHTLCESCVDLLFVR-------GSGSCPECDTPL 53 (309)
T ss_pred CCCCcCCCCCccCcccccccC--CCCCcccHHHHHHHhcC-------CCCCCCCCCCcc
Confidence 379999873 333222 233 89999999998865321 112577775544
No 168
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=57.70 E-value=4.4 Score=47.19 Aligned_cols=27 Identities=15% Similarity=0.014 Sum_probs=24.5
Q ss_pred cccceEEEeeccCCchhhHHHHhcCCC
Q 011140 282 VQKFRVKLLAESGGQSTMDVLCQIGLD 308 (492)
Q Consensus 282 ~gkTpLHlAa~~G~~~iv~vLlq~Gad 308 (492)
...|||.+||..++.+|+++||+.|+.
T Consensus 130 ~ditPliLAAh~NnyEil~~Ll~kg~~ 156 (822)
T KOG3609|consen 130 PDITPLMLAAHLNNFEILQCLLTRGHC 156 (822)
T ss_pred CCccHHHHHHHhcchHHHHHHHHcCCC
Confidence 568999999999999999999999998
No 169
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.25 E-value=4.6 Score=43.74 Aligned_cols=42 Identities=26% Similarity=0.725 Sum_probs=34.2
Q ss_pred CCcccCcCCccccccCccccCcc--ccccccccCceeccCCCCCc
Q 011140 420 DHWVPDEAVSKCTACGTDFSAFV--RKHHCRNCGDIFCDKCTHGR 462 (492)
Q Consensus 420 p~WvpD~~v~~C~~C~~~Fs~~~--RRHHCR~CG~VfC~kCS~~r 462 (492)
..|+... .+.|..|.+...... -|+||-.||..||.-|+..-
T Consensus 361 ekwl~~N-~krCP~C~v~IEr~eGCnKM~C~~c~~~fc~~c~~~l 404 (445)
T KOG1814|consen 361 EKWLESN-SKRCPKCKVVIERSEGCNKMHCTKCGTYFCWICAELL 404 (445)
T ss_pred HHHHHhc-CCCCCcccceeecCCCccceeeccccccceeehhhhc
Confidence 4788654 789999998776664 48999999999999998743
No 170
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=56.49 E-value=3.4 Score=30.18 Aligned_cols=33 Identities=21% Similarity=0.583 Sum_probs=24.3
Q ss_pred cccccCccccCccccccccccCceeccCCCCCcE
Q 011140 430 KCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI 463 (492)
Q Consensus 430 ~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri 463 (492)
.|.+|...|..-....-. .||.+||..|....+
T Consensus 2 ~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~~~ 34 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKL-PCGHVFHRSCIKEWL 34 (44)
T ss_dssp CETTTTCBHHTTSCEEEE-TTSEEEEHHHHHHHH
T ss_pred CCcCCChhhcCCCeEEEc-cCCCeeCHHHHHHHH
Confidence 699999988664333333 499999999987654
No 171
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=56.14 E-value=7.4 Score=31.01 Aligned_cols=27 Identities=30% Similarity=0.591 Sum_probs=21.3
Q ss_pred CccccccCccccC--ccccccccccCcee
Q 011140 428 VSKCTACGTDFSA--FVRKHHCRNCGDIF 454 (492)
Q Consensus 428 v~~C~~C~~~Fs~--~~RRHHCR~CG~Vf 454 (492)
...|..|+..-.. ..|.++|..||..+
T Consensus 28 Sq~C~~CG~~~~~~~~~r~~~C~~Cg~~~ 56 (69)
T PF07282_consen 28 SQTCPRCGHRNKKRRSGRVFTCPNCGFEM 56 (69)
T ss_pred ccCccCcccccccccccceEEcCCCCCEE
Confidence 5689999865554 67899999999874
No 172
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.52 E-value=92 Score=32.63 Aligned_cols=29 Identities=31% Similarity=0.544 Sum_probs=20.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 011140 23 DLQPRSYASAPPFSTSYSPSDYSGGYPQNYP 53 (492)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (492)
|..++.+++++--.+.-+|++ +.|+++|.
T Consensus 169 di~~~~~~s~d~~P~~tGp~~--~syp~Py~ 197 (338)
T KOG0917|consen 169 DIEENEDASADSLPTQTGPTQ--PSYPSPYD 197 (338)
T ss_pred ccCccccccCCCCCCCCCCCC--CCCCCCCC
Confidence 677888999887777777776 34444443
No 173
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=55.27 E-value=1.2 Score=49.86 Aligned_cols=63 Identities=13% Similarity=0.105 Sum_probs=49.6
Q ss_pred ccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCC-CcccCCCCCceeEEeec-cccccc
Q 011140 270 PKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDG-IRMLDPNTSRTLRIYPL-ENITRC 332 (492)
Q Consensus 270 lkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadG-v~v~DkngnnaLHIApL-e~It~c 332 (492)
-++|-+..+++....+-||.|+..|+-+||..||.+|-.. ++|.|.+|.|+||-|.- .+.++|
T Consensus 886 h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc 950 (1004)
T KOG0782|consen 886 HLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVC 950 (1004)
T ss_pred HhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHH
Confidence 3566677788888899999999999999999999999432 34889999999998643 344444
No 174
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=54.73 E-value=4.1 Score=43.44 Aligned_cols=33 Identities=30% Similarity=0.795 Sum_probs=22.8
Q ss_pred CCCcccCcCC-----ccccccCccccCccccccccccCce
Q 011140 419 KDHWVPDEAV-----SKCTACGTDFSAFVRKHHCRNCGDI 453 (492)
Q Consensus 419 ~p~WvpD~~v-----~~C~~C~~~Fs~~~RRHHCR~CG~V 453 (492)
...|.|.... .-|..|+- | .--|-||||+|.+.
T Consensus 77 p~~wkPe~~~D~~~lqfCk~Cqg-Y-KapRSHHCrkCnrC 114 (414)
T KOG1314|consen 77 PLGWKPENPKDEMFLQFCKKCQG-Y-KAPRSHHCRKCNRC 114 (414)
T ss_pred CCCCCCCCChhHHHHHHHhhccC-c-CCCccccchHHHHH
Confidence 5678884433 46888864 1 24589999999774
No 175
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=54.39 E-value=7.2 Score=26.50 Aligned_cols=23 Identities=30% Similarity=0.894 Sum_probs=12.7
Q ss_pred cccccCccccCccccccccccCcee
Q 011140 430 KCTACGTDFSAFVRKHHCRNCGDIF 454 (492)
Q Consensus 430 ~C~~C~~~Fs~~~RRHHCR~CG~Vf 454 (492)
.|..|++...... .-|.+||..|
T Consensus 2 ~CP~C~~~V~~~~--~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESA--KFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhc--CcCCCCCCCC
Confidence 4666666544332 3466666654
No 176
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=53.52 E-value=1.9e+02 Score=32.08 Aligned_cols=10 Identities=20% Similarity=0.172 Sum_probs=4.5
Q ss_pred CCCCCCCCCC
Q 011140 114 AFYPPFDQHQ 123 (492)
Q Consensus 114 ~~~~~~~~~~ 123 (492)
+...|+-++.
T Consensus 355 p~~~p~~~~~ 364 (518)
T KOG1830|consen 355 PSTIPFVEPA 364 (518)
T ss_pred CCCCCCcccC
Confidence 4444444443
No 177
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=52.48 E-value=11 Score=25.86 Aligned_cols=29 Identities=24% Similarity=0.650 Sum_probs=24.2
Q ss_pred cccccCccccCccccccccccCceeccCCC
Q 011140 430 KCTACGTDFSAFVRKHHCRNCGDIFCDKCT 459 (492)
Q Consensus 430 ~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS 459 (492)
.|..|+++.+-+. ..+|..|+..+..+|.
T Consensus 2 ~C~~C~~~~~~~~-~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFY-FYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCE-eEEeCCCCCeEcCccC
Confidence 5889998888777 8999999988887774
No 178
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=52.45 E-value=8.2 Score=44.17 Aligned_cols=31 Identities=29% Similarity=0.810 Sum_probs=25.5
Q ss_pred CCccccccCccccCccccccccccCce------eccCCCCC
Q 011140 427 AVSKCTACGTDFSAFVRKHHCRNCGDI------FCDKCTHG 461 (492)
Q Consensus 427 ~v~~C~~C~~~Fs~~~RRHHCR~CG~V------fC~kCS~~ 461 (492)
.++.|..|+.++.. ..|.+||.. ||..|...
T Consensus 14 ~akFC~~CG~~l~~----~~Cp~CG~~~~~~~~fC~~CG~~ 50 (645)
T PRK14559 14 NNRFCQKCGTSLTH----KPCPQCGTEVPVDEAHCPNCGAE 50 (645)
T ss_pred CCccccccCCCCCC----CcCCCCCCCCCcccccccccCCc
Confidence 36789999998853 369999998 99999875
No 179
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=51.90 E-value=2.1 Score=42.70 Aligned_cols=54 Identities=26% Similarity=0.601 Sum_probs=35.9
Q ss_pred CccccccCccccCc------------cccccccccCceeccCCCCCcE--ecc-------cCCCCCceecccchH
Q 011140 428 VSKCTACGTDFSAF------------VRKHHCRNCGDIFCDKCTHGRI--ALT-------ADANAQPVRVCDRCM 481 (492)
Q Consensus 428 v~~C~~C~~~Fs~~------------~RRHHCR~CG~VfC~kCS~~ri--~Lp-------~~~s~kpvRVC~~Cy 481 (492)
...|..|++.|+-+ .|-..|..|++.|-.+||-..- .+- ..+-...+-||.+|-
T Consensus 145 r~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg 219 (267)
T KOG3576|consen 145 RHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCG 219 (267)
T ss_pred HHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccC
Confidence 45899999999853 2445699999999999985210 000 011234578999993
No 180
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=51.89 E-value=8.4 Score=28.80 Aligned_cols=25 Identities=28% Similarity=0.624 Sum_probs=18.6
Q ss_pred cccccCccccCccc--cccccccCcee
Q 011140 430 KCTACGTDFSAFVR--KHHCRNCGDIF 454 (492)
Q Consensus 430 ~C~~C~~~Fs~~~R--RHHCR~CG~Vf 454 (492)
.|..|+..|.+-.+ ..+|..||.-+
T Consensus 5 ~C~~CG~~~~~~~~~~~~~Cp~CG~~~ 31 (46)
T PRK00398 5 KCARCGREVELDEYGTGVRCPYCGYRI 31 (46)
T ss_pred ECCCCCCEEEECCCCCceECCCCCCeE
Confidence 69999988876544 57888888643
No 181
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=51.52 E-value=5.3 Score=30.01 Aligned_cols=31 Identities=29% Similarity=0.736 Sum_probs=15.7
Q ss_pred ccccCccccCccccccccccCceeccCCCCCc
Q 011140 431 CTACGTDFSAFVRKHHCRNCGDIFCDKCTHGR 462 (492)
Q Consensus 431 C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~r 462 (492)
|.+|.. |+...+.--=-.||.+||.+|....
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKL 31 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHH
Confidence 677777 7654443333569999999987643
No 182
>KOG3173 consensus Predicted Zn-finger protein [General function prediction only]
Probab=51.02 E-value=8.1 Score=37.00 Aligned_cols=28 Identities=29% Similarity=0.818 Sum_probs=23.1
Q ss_pred CccccccCccccCccccccccccCceeccCC
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKC 458 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kC 458 (492)
...|..|+++-+++. .||| ||.+||...
T Consensus 105 ~~rC~~C~kk~gltg--f~Cr-CG~~fC~~H 132 (167)
T KOG3173|consen 105 KKRCFKCRKKVGLTG--FKCR-CGNTFCGTH 132 (167)
T ss_pred chhhhhhhhhhcccc--cccc-cCCcccccc
Confidence 456999999888887 8886 999998763
No 183
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=50.77 E-value=9.1 Score=39.15 Aligned_cols=33 Identities=24% Similarity=0.641 Sum_probs=26.3
Q ss_pred ccCcCCccccccCccccCcc-------ccccccccCceec
Q 011140 423 VPDEAVSKCTACGTDFSAFV-------RKHHCRNCGDIFC 455 (492)
Q Consensus 423 vpD~~v~~C~~C~~~Fs~~~-------RRHHCR~CG~VfC 455 (492)
-.-++|+.|..|+++|.-+- -..||..|++.|-
T Consensus 127 p~rKeVSRCr~C~~rYDPVP~dkmwG~aef~C~~C~h~F~ 166 (278)
T PF15135_consen 127 PQRKEVSRCRKCRKRYDPVPCDKMWGIAEFHCPKCRHNFR 166 (278)
T ss_pred CcccccccccccccccCCCccccccceeeeecccccccch
Confidence 44567899999999988752 3789999999873
No 184
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=50.72 E-value=6.6 Score=42.75 Aligned_cols=34 Identities=21% Similarity=0.602 Sum_probs=27.9
Q ss_pred CccccccCccccCc---------cccccccccCceeccCCCCC
Q 011140 428 VSKCTACGTDFSAF---------VRKHHCRNCGDIFCDKCTHG 461 (492)
Q Consensus 428 v~~C~~C~~~Fs~~---------~RRHHCR~CG~VfC~kCS~~ 461 (492)
.-.|+.|+++|+.+ .-..||..||.-+-..|+..
T Consensus 128 ~Y~Cp~C~kkyt~Lea~~L~~~~~~~F~C~~C~gelveDe~~~ 170 (436)
T KOG2593|consen 128 GYVCPNCQKKYTSLEALQLLDNETGEFHCENCGGELVEDENKL 170 (436)
T ss_pred cccCCccccchhhhHHHHhhcccCceEEEecCCCchhcccccC
Confidence 45899999999875 25899999999888888764
No 185
>KOG3836 consensus HLH transcription factor EBF/Olf-1 and related DNA binding proteins [Transcription]
Probab=50.46 E-value=8.3 Score=43.61 Aligned_cols=62 Identities=16% Similarity=0.126 Sum_probs=49.5
Q ss_pred ccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCc
Q 011140 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSR 319 (492)
Q Consensus 257 ~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~Dkngnn 319 (492)
+..++....|-.|+|++++.+++|..|.|+||++...|...+...++....+ +.+...++..
T Consensus 403 ~~~~~~ss~v~~lik~~~~~~~~d~f~~~p~~~~~~sgdp~~~~~~~~~~~~-~~~~~~~~~~ 464 (605)
T KOG3836|consen 403 AALNNSSSLVFTLIKKGAHPNDDDKFGFTPLHIPQISGDPRIIQLLLNCKVA-ISLKSVNGMI 464 (605)
T ss_pred hhhcCCccceeeeecccCccchhcccccccccccCCCCCHHHhhhhhhhhhh-hhcccccccc
Confidence 3455667788889999999999999999999999999999998887776655 4444555544
No 186
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=50.06 E-value=14 Score=28.32 Aligned_cols=32 Identities=25% Similarity=0.653 Sum_probs=22.8
Q ss_pred ccc--ccCccccC----ccccccccccCceeccCCCCC
Q 011140 430 KCT--ACGTDFSA----FVRKHHCRNCGDIFCDKCTHG 461 (492)
Q Consensus 430 ~C~--~C~~~Fs~----~~RRHHCR~CG~VfC~kCS~~ 461 (492)
-|. .|+..+.. ...+-.|..||..||..|...
T Consensus 20 ~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~ 57 (64)
T smart00647 20 WCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVP 57 (64)
T ss_pred CCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCc
Confidence 455 66544333 356788999999999999763
No 187
>TIGR01031 rpmF_bact ribosomal protein L32. This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus.
Probab=49.58 E-value=10 Score=29.96 Aligned_cols=27 Identities=30% Similarity=0.770 Sum_probs=17.0
Q ss_pred c-ccCcCCccccccCccccCcccccc-ccccCc
Q 011140 422 W-VPDEAVSKCTACGTDFSAFVRKHH-CRNCGD 452 (492)
Q Consensus 422 W-vpD~~v~~C~~C~~~Fs~~~RRHH-CR~CG~ 452 (492)
| +.......|..|+. +.+.|| |..||.
T Consensus 19 ~kl~~p~l~~C~~cG~----~~~~H~vc~~cG~ 47 (55)
T TIGR01031 19 AKLTAPTLVVCPNCGE----FKLPHRVCPSCGY 47 (55)
T ss_pred ccccCCcceECCCCCC----cccCeeECCccCe
Confidence 5 44445668999987 444555 777773
No 188
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=49.32 E-value=10 Score=38.57 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=22.4
Q ss_pred CCcccCcC--CccccccCccccCccccccccccCcee
Q 011140 420 DHWVPDEA--VSKCTACGTDFSAFVRKHHCRNCGDIF 454 (492)
Q Consensus 420 p~WvpD~~--v~~C~~C~~~Fs~~~RRHHCR~CG~Vf 454 (492)
..|+...+ .+.|..|+.. .-.|-|||+-|++-+
T Consensus 103 ~~~~~~~~~~~~~C~~C~~~--rPpRs~HCsvC~~CV 137 (299)
T KOG1311|consen 103 NVDVNGIQVEWKYCDTCQLY--RPPRSSHCSVCNNCV 137 (299)
T ss_pred CcccCCcccceEEcCcCccc--CCCCcccchhhcccc
Confidence 34444333 4689999763 456899999998744
No 189
>PRK04023 DNA polymerase II large subunit; Validated
Probab=48.33 E-value=12 Score=44.78 Aligned_cols=29 Identities=31% Similarity=0.807 Sum_probs=22.5
Q ss_pred CccccccCccccCccccccccccCce-----eccCCCC
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDI-----FCDKCTH 460 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~V-----fC~kCS~ 460 (492)
...|..|++.. -...|.+||.. ||.+|-.
T Consensus 626 ~RfCpsCG~~t----~~frCP~CG~~Te~i~fCP~CG~ 659 (1121)
T PRK04023 626 RRKCPSCGKET----FYRRCPFCGTHTEPVYRCPRCGI 659 (1121)
T ss_pred CccCCCCCCcC----CcccCCCCCCCCCcceeCccccC
Confidence 56999999874 23689999964 9999943
No 190
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=47.95 E-value=11 Score=26.85 Aligned_cols=12 Identities=33% Similarity=0.922 Sum_probs=8.2
Q ss_pred cccccCccccCc
Q 011140 430 KCTACGTDFSAF 441 (492)
Q Consensus 430 ~C~~C~~~Fs~~ 441 (492)
.|..|++.|.+-
T Consensus 4 ~CP~C~~~~~v~ 15 (38)
T TIGR02098 4 QCPNCKTSFRVV 15 (38)
T ss_pred ECCCCCCEEEeC
Confidence 577777776654
No 191
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=47.76 E-value=11 Score=30.42 Aligned_cols=31 Identities=19% Similarity=0.452 Sum_probs=21.9
Q ss_pred cccccccCceeccCCCCCcEecccCCCCCceecc-cchHHHHHHhhhh
Q 011140 444 KHHCRNCGDIFCDKCTHGRIALTADANAQPVRVC-DRCMVGVIDWLIS 490 (492)
Q Consensus 444 RHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC-~~Cy~~L~~r~~~ 490 (492)
..||..||.-+ + ...+.| ..|-+...++.++
T Consensus 3 HkHC~~CG~~I-----------p-----~~~~fCS~~C~~~~~k~qk~ 34 (59)
T PF09889_consen 3 HKHCPVCGKPI-----------P-----PDESFCSPKCREEYRKRQKR 34 (59)
T ss_pred CCcCCcCCCcC-----------C-----cchhhhCHHHHHHHHHHHHH
Confidence 46899998742 2 357889 5899887766654
No 192
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=47.67 E-value=1.9e+02 Score=34.20 Aligned_cols=8 Identities=25% Similarity=0.364 Sum_probs=3.1
Q ss_pred CCCCCCCC
Q 011140 23 DLQPRSYA 30 (492)
Q Consensus 23 ~~~~~~~~ 30 (492)
+.+|+.-.
T Consensus 575 ~~~Ppp~g 582 (894)
T KOG0132|consen 575 DPAPPPVG 582 (894)
T ss_pred CCCCCCCC
Confidence 33333333
No 193
>PF01907 Ribosomal_L37e: Ribosomal protein L37e; InterPro: IPR001569 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeal ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of proteins of 56 to 96 amino-acid residues that share a highly conserved region located in the N-terminal part.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A19_A 4A1D_A 4A18_A 4A1B_A 1S1I_Y 3O5H_d 3IZS_l 3O58_d 2ZKR_2 3IZR_l ....
Probab=47.09 E-value=10 Score=30.37 Aligned_cols=7 Identities=57% Similarity=1.516 Sum_probs=3.4
Q ss_pred ccccCce
Q 011140 447 CRNCGDI 453 (492)
Q Consensus 447 CR~CG~V 453 (492)
||+||+.
T Consensus 18 CrRCG~~ 24 (55)
T PF01907_consen 18 CRRCGRR 24 (55)
T ss_dssp -TTTSSE
T ss_pred ecccCCe
Confidence 5666654
No 194
>PF09332 Mcm10: Mcm10 replication factor; InterPro: IPR015411 Mcm10 is a eukaryotic DNA replication factor that regulates the stability and chromatin association of DNA polymerase alpha []. ; PDB: 2KWQ_A.
Probab=46.68 E-value=7.5 Score=41.33 Aligned_cols=23 Identities=48% Similarity=1.132 Sum_probs=7.7
Q ss_pred cccccCccccCccc--cccccccCc
Q 011140 430 KCTACGTDFSAFVR--KHHCRNCGD 452 (492)
Q Consensus 430 ~C~~C~~~Fs~~~R--RHHCR~CG~ 452 (492)
.|..|+.+...+.| .+||.+||.
T Consensus 287 kC~~C~~Rt~sl~r~P~~~C~~Cg~ 311 (344)
T PF09332_consen 287 KCKDCGNRTISLERLPKKHCSNCGS 311 (344)
T ss_dssp E-T-TS-EEEESSSS--S--TTT-S
T ss_pred ECCCCCCeeeecccCCCCCCCcCCc
Confidence 45555544443333 455655554
No 195
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=45.89 E-value=15 Score=28.57 Aligned_cols=27 Identities=30% Similarity=0.769 Sum_probs=18.3
Q ss_pred CccccccCcccc-CccccccccccCcee
Q 011140 428 VSKCTACGTDFS-AFVRKHHCRNCGDIF 454 (492)
Q Consensus 428 v~~C~~C~~~Fs-~~~RRHHCR~CG~Vf 454 (492)
...|..|+..|- ....|.+|..||...
T Consensus 20 ~~fCP~Cg~~~m~~~~~r~~C~~Cgyt~ 47 (50)
T PRK00432 20 NKFCPRCGSGFMAEHLDRWHCGKCGYTE 47 (50)
T ss_pred cCcCcCCCcchheccCCcEECCCcCCEE
Confidence 458999987522 223578888888764
No 196
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=45.43 E-value=4.2e+02 Score=28.90 Aligned_cols=11 Identities=18% Similarity=0.181 Sum_probs=6.2
Q ss_pred CCCCccccccc
Q 011140 231 PKSSNSTLFDD 241 (492)
Q Consensus 231 ~~~~~~a~~~d 241 (492)
.++|.-|-|.|
T Consensus 354 ~~plSeAEFEd 364 (498)
T KOG4849|consen 354 MFPLSEAEFED 364 (498)
T ss_pred CccchHHHHHH
Confidence 34466666664
No 197
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=45.07 E-value=13 Score=32.07 Aligned_cols=26 Identities=35% Similarity=0.825 Sum_probs=17.6
Q ss_pred CccccccCccccCc---------cccccccccCce
Q 011140 428 VSKCTACGTDFSAF---------VRKHHCRNCGDI 453 (492)
Q Consensus 428 v~~C~~C~~~Fs~~---------~RRHHCR~CG~V 453 (492)
.+.|..|+++.... .-|.+||.|+.-
T Consensus 33 rS~C~~C~~~L~~~~lIPi~S~l~lrGrCr~C~~~ 67 (92)
T PF06750_consen 33 RSHCPHCGHPLSWWDLIPILSYLLLRGRCRYCGAP 67 (92)
T ss_pred CCcCcCCCCcCcccccchHHHHHHhCCCCcccCCC
Confidence 35788888775543 357888888763
No 198
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=44.95 E-value=14 Score=36.66 Aligned_cols=25 Identities=28% Similarity=0.707 Sum_probs=19.6
Q ss_pred CCccccccCccccCccccccccccCcee
Q 011140 427 AVSKCTACGTDFSAFVRKHHCRNCGDIF 454 (492)
Q Consensus 427 ~v~~C~~C~~~Fs~~~RRHHCR~CG~Vf 454 (492)
....|..|+. +..|.+.|..||.++
T Consensus 308 tS~~C~~cg~---~~~r~~~C~~cg~~~ 332 (364)
T COG0675 308 TSKTCPCCGH---LSGRLFKCPRCGFVH 332 (364)
T ss_pred CcccccccCC---ccceeEECCCCCCee
Confidence 3578999999 446778899998865
No 199
>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]
Probab=44.59 E-value=9.8 Score=39.85 Aligned_cols=28 Identities=36% Similarity=0.678 Sum_probs=19.2
Q ss_pred ccCcCCccccccCccccCccccccccccCc
Q 011140 423 VPDEAVSKCTACGTDFSAFVRKHHCRNCGD 452 (492)
Q Consensus 423 vpD~~v~~C~~C~~~Fs~~~RRHHCR~CG~ 452 (492)
..+..+..|..|+. -.-.|-|||+-|++
T Consensus 104 ~~~g~~R~C~kC~~--iKPdRaHHCsvC~r 131 (307)
T KOG1315|consen 104 TSDGAVRYCDKCKC--IKPDRAHHCSVCNR 131 (307)
T ss_pred cCCCCceeeccccc--ccCCccccchhhhh
Confidence 34556778888865 23458899998854
No 200
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.38 E-value=6.7 Score=40.28 Aligned_cols=46 Identities=26% Similarity=0.595 Sum_probs=31.0
Q ss_pred ccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHH
Q 011140 429 SKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGV 484 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L 484 (492)
-+|..|...- -.--|+.||+|||..|.-..+ ..+..-.|-.|-...
T Consensus 216 ~kC~lC~e~~----~~ps~t~CgHlFC~~Cl~~~~------t~~k~~~CplCRak~ 261 (271)
T COG5574 216 YKCFLCLEEP----EVPSCTPCGHLFCLSCLLISW------TKKKYEFCPLCRAKV 261 (271)
T ss_pred cceeeeeccc----CCcccccccchhhHHHHHHHH------HhhccccCchhhhhc
Confidence 4799996532 345699999999999976421 124455588886543
No 201
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=44.36 E-value=4.4 Score=43.07 Aligned_cols=17 Identities=24% Similarity=0.534 Sum_probs=14.2
Q ss_pred CCccccccCccccCccc
Q 011140 427 AVSKCTACGTDFSAFVR 443 (492)
Q Consensus 427 ~v~~C~~C~~~Fs~~~R 443 (492)
..++|.+|.+.|++|..
T Consensus 40 ~gkECKICtrPfT~Frw 56 (377)
T KOG0153|consen 40 YGKECKICTRPFTIFRW 56 (377)
T ss_pred cCCccceecCcceEEEe
Confidence 35689999999999854
No 202
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=44.27 E-value=8.9 Score=44.79 Aligned_cols=52 Identities=6% Similarity=0.150 Sum_probs=42.8
Q ss_pred cccCCCchhhhhhcccCCc----ccccccccccceEEEeeccCCchhhHHHHhcCC
Q 011140 256 SSVGSGSSKIVRAVPKVDT----HQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (492)
Q Consensus 256 ~~~~~G~~~iVr~LlkagA----~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Ga 307 (492)
.++..|+.-.||..+.--+ .+|+.|.-|+++||+|+++-+.+++++|++.+.
T Consensus 31 ~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~ 86 (822)
T KOG3609|consen 31 LAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSS 86 (822)
T ss_pred HHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcc
Confidence 4677788888887654433 577889999999999999999999999999853
No 203
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=44.13 E-value=10 Score=29.59 Aligned_cols=24 Identities=33% Similarity=0.803 Sum_probs=17.6
Q ss_pred ccccccCccccCc--cccccccccCc
Q 011140 429 SKCTACGTDFSAF--VRKHHCRNCGD 452 (492)
Q Consensus 429 ~~C~~C~~~Fs~~--~RRHHCR~CG~ 452 (492)
=.|+.|++.|.++ .+-.-|..||.
T Consensus 7 Y~C~~Cg~~~~~~~~~~~irCp~Cg~ 32 (49)
T COG1996 7 YKCARCGREVELDQETRGIRCPYCGS 32 (49)
T ss_pred EEhhhcCCeeehhhccCceeCCCCCc
Confidence 3799999999855 35566777765
No 204
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=43.76 E-value=10 Score=28.72 Aligned_cols=23 Identities=39% Similarity=1.084 Sum_probs=15.0
Q ss_pred cccccCccccCccccc-----cccccCc
Q 011140 430 KCTACGTDFSAFVRKH-----HCRNCGD 452 (492)
Q Consensus 430 ~C~~C~~~Fs~~~RRH-----HCR~CG~ 452 (492)
.|..|+..|..+.+-+ .|-.||.
T Consensus 7 ~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (52)
T TIGR02605 7 RCTACGHRFEVLQKMSDDPLATCPECGG 34 (52)
T ss_pred EeCCCCCEeEEEEecCCCCCCCCCCCCC
Confidence 6888888888775433 3555554
No 205
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.62 E-value=7.1 Score=42.24 Aligned_cols=31 Identities=23% Similarity=0.579 Sum_probs=23.6
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCc
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGR 462 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~r 462 (492)
.-.|.+|...|..- --..||+.||..|....
T Consensus 26 ~l~C~IC~d~~~~P----vitpCgH~FCs~CI~~~ 56 (397)
T TIGR00599 26 SLRCHICKDFFDVP----VLTSCSHTFCSLCIRRC 56 (397)
T ss_pred ccCCCcCchhhhCc----cCCCCCCchhHHHHHHH
Confidence 45899998877532 24689999999998754
No 206
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=43.30 E-value=15 Score=26.20 Aligned_cols=23 Identities=26% Similarity=0.732 Sum_probs=14.7
Q ss_pred cccccCccccCccc-cccccccCc
Q 011140 430 KCTACGTDFSAFVR-KHHCRNCGD 452 (492)
Q Consensus 430 ~C~~C~~~Fs~~~R-RHHCR~CG~ 452 (492)
.|..|+..|.+-.+ ...|+.||.
T Consensus 2 ~C~~Cg~~~~~~~~~~irC~~CG~ 25 (32)
T PF03604_consen 2 ICGECGAEVELKPGDPIRCPECGH 25 (32)
T ss_dssp BESSSSSSE-BSTSSTSSBSSSS-
T ss_pred CCCcCCCeeEcCCCCcEECCcCCC
Confidence 48888888885432 456888875
No 207
>PF07503 zf-HYPF: HypF finger; InterPro: IPR011125 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Proteins of the HypF family are involved in the maturation and regulation of hydrogenase []. In the N terminus they appear to have two zinc finger domains that are similar to those found in the DnaJ chaperone []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A.
Probab=42.61 E-value=6.3 Score=28.59 Aligned_cols=23 Identities=35% Similarity=0.951 Sum_probs=13.4
Q ss_pred cccccCccc-cCcccccc-----ccccCc
Q 011140 430 KCTACGTDF-SAFVRKHH-----CRNCGD 452 (492)
Q Consensus 430 ~C~~C~~~F-s~~~RRHH-----CR~CG~ 452 (492)
.|..|.+.+ +..+||+| |.+||-
T Consensus 1 lC~~C~~Ey~~p~~RR~~~~~isC~~CGP 29 (35)
T PF07503_consen 1 LCDDCLKEYFDPSNRRFHYQFISCTNCGP 29 (35)
T ss_dssp --HHHHHHHCSTTSTTTT-TT--BTTCC-
T ss_pred CCHHHHHHHcCCCCCcccCcCccCCCCCC
Confidence 366776553 56777777 666664
No 208
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=42.19 E-value=9.5 Score=39.41 Aligned_cols=54 Identities=28% Similarity=0.716 Sum_probs=33.1
Q ss_pred CccccccCcccc---Cc---cc------cccccccCceeccCCCCCcEecccCCCCCceecccchHHH
Q 011140 428 VSKCTACGTDFS---AF---VR------KHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVG 483 (492)
Q Consensus 428 v~~C~~C~~~Fs---~~---~R------RHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~ 483 (492)
..+|.+|++.|+ +| .| -.-|-+||+.|=++ |..|+-+-..... ..--|..|-+.
T Consensus 187 ~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADR-SNLRAHmQTHS~~-K~~qC~~C~Ks 252 (279)
T KOG2462|consen 187 PCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADR-SNLRAHMQTHSDV-KKHQCPRCGKS 252 (279)
T ss_pred CcccccccccccchHHhhcccccccCCCCccCCcccchhcch-HHHHHHHHhhcCC-ccccCcchhhH
Confidence 457999999999 43 23 33488888888444 3333333333332 35668888765
No 209
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=42.10 E-value=10 Score=31.72 Aligned_cols=56 Identities=21% Similarity=0.449 Sum_probs=26.0
Q ss_pred cccccCccccCccccccccccCce-----eccCCCCCcEecccCCCCCceecccchHHHHHHh
Q 011140 430 KCTACGTDFSAFVRKHHCRNCGDI-----FCDKCTHGRIALTADANAQPVRVCDRCMVGVIDW 487 (492)
Q Consensus 430 ~C~~C~~~Fs~~~RRHHCR~CG~V-----fC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~~r 487 (492)
.|..|+........+.||..|+.- +|-.|-..-..|-.=+ .--=.|..|...++++
T Consensus 3 ~CP~C~~~L~~~~~~~~C~~C~~~~~~~a~CPdC~~~Le~LkACG--AvdYFC~~c~gLiSKk 63 (70)
T PF07191_consen 3 TCPKCQQELEWQGGHYHCEACQKDYKKEAFCPDCGQPLEVLKACG--AVDYFCNHCHGLISKK 63 (70)
T ss_dssp B-SSS-SBEEEETTEEEETTT--EEEEEEE-TTT-SB-EEEEETT--EEEEE-TTTT-EE-TT
T ss_pred cCCCCCCccEEeCCEEECccccccceecccCCCcccHHHHHHHhc--ccceeeccCCceeecc
Confidence 577777776666667777777764 5666655433332211 1234577777665543
No 210
>PRK04136 rpl40e 50S ribosomal protein L40e; Provisional
Probab=42.01 E-value=15 Score=28.66 Aligned_cols=23 Identities=30% Similarity=0.670 Sum_probs=16.4
Q ss_pred CccccccCccccCccccccccccCc
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGD 452 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~ 452 (492)
...|+.|...- -.|-..||+||.
T Consensus 14 k~ICrkC~ARn--p~~A~~CRKCg~ 36 (48)
T PRK04136 14 KKICMRCNARN--PWRATKCRKCGY 36 (48)
T ss_pred ccchhcccCCC--CccccccccCCC
Confidence 34799997643 346788999886
No 211
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=41.95 E-value=9.5 Score=27.24 Aligned_cols=29 Identities=24% Similarity=0.689 Sum_probs=19.5
Q ss_pred ccccCccccCccccccccccCceeccCCCCCc
Q 011140 431 CTACGTDFSAFVRKHHCRNCGDIFCDKCTHGR 462 (492)
Q Consensus 431 C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~r 462 (492)
|.+|...+ ........||.+||..|....
T Consensus 1 C~iC~~~~---~~~~~~~~CGH~fC~~C~~~~ 29 (39)
T PF13923_consen 1 CPICLDEL---RDPVVVTPCGHSFCKECIEKY 29 (39)
T ss_dssp ETTTTSB----SSEEEECTTSEEEEHHHHHHH
T ss_pred CCCCCCcc---cCcCEECCCCCchhHHHHHHH
Confidence 55665433 234467899999999997654
No 212
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.55 E-value=52 Score=35.19 Aligned_cols=12 Identities=50% Similarity=0.971 Sum_probs=6.0
Q ss_pred CCCCCCCCCCCC
Q 011140 49 PQNYPPYPQNSD 60 (492)
Q Consensus 49 ~~~~~~~~~~~~ 60 (492)
++.++||+++.-
T Consensus 147 ~~~p~p~p~~~~ 158 (365)
T KOG2391|consen 147 PSPPPPYPQTEY 158 (365)
T ss_pred CCCCCCCCcccC
Confidence 445555555443
No 213
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.43 E-value=2.5e+02 Score=33.54 Aligned_cols=26 Identities=27% Similarity=0.207 Sum_probs=16.3
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 011140 12 QYPNPNPNPAVDLQPRSYASAPPFSTS 38 (492)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (492)
|++.+- +++..++..+.|+.+++.+.
T Consensus 10 q~~~~~-~~~~~~~~~~p~~~~~~~g~ 35 (887)
T KOG1985|consen 10 QNPPPQ-TGPVQPALFPPASLTPQNGM 35 (887)
T ss_pred cCCCCC-CCCcCcccCCCccCCccCCC
Confidence 555554 55556666667777777665
No 214
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=39.95 E-value=9.2 Score=24.88 Aligned_cols=12 Identities=42% Similarity=1.198 Sum_probs=10.1
Q ss_pred cccccCccccCc
Q 011140 430 KCTACGTDFSAF 441 (492)
Q Consensus 430 ~C~~C~~~Fs~~ 441 (492)
.|..|++.|..+
T Consensus 3 ~C~~C~~~F~~~ 14 (27)
T PF13912_consen 3 ECDECGKTFSSL 14 (27)
T ss_dssp EETTTTEEESSH
T ss_pred CCCccCCccCCh
Confidence 688999999875
No 215
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=39.89 E-value=21 Score=25.76 Aligned_cols=13 Identities=23% Similarity=0.534 Sum_probs=8.4
Q ss_pred CCCCceecccchH
Q 011140 469 ANAQPVRVCDRCM 481 (492)
Q Consensus 469 ~s~kpvRVC~~Cy 481 (492)
+..+.-.||..|-
T Consensus 17 gd~r~R~vC~~Cg 29 (34)
T PF14803_consen 17 GDDRERLVCPACG 29 (34)
T ss_dssp T-SS-EEEETTTT
T ss_pred CCCccceECCCCC
Confidence 3457888999984
No 216
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=39.58 E-value=10 Score=44.32 Aligned_cols=43 Identities=26% Similarity=0.512 Sum_probs=29.7
Q ss_pred CCCcccCcC--CccccccCccccCccccccccccCceeccCCCCCcE
Q 011140 419 KDHWVPDEA--VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI 463 (492)
Q Consensus 419 ~p~WvpD~~--v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri 463 (492)
+..|..... ...|..|.+. +|+-.--|++||..+|-.|...+-
T Consensus 218 ~~a~k~a~~g~~~mC~~C~~t--lfn~hw~C~~C~~~~Cl~C~r~~~ 262 (889)
T KOG1356|consen 218 KVAWKRAVKGIREMCDRCETT--LFNIHWRCPRCGFGVCLDCYRKWY 262 (889)
T ss_pred ccchhhcccCcchhhhhhccc--ccceeEEccccCCeeeecchhhcc
Confidence 445654332 4689999862 232234499999999999999775
No 217
>PRK11595 DNA utilization protein GntX; Provisional
Probab=39.50 E-value=8.4 Score=37.92 Aligned_cols=31 Identities=26% Similarity=0.778 Sum_probs=23.8
Q ss_pred ccccccCccccCccccccccccCce------eccCCCCC
Q 011140 429 SKCTACGTDFSAFVRKHHCRNCGDI------FCDKCTHG 461 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~RRHHCR~CG~V------fC~kCS~~ 461 (492)
..|..|...|.++ .++|..||+. +|..|...
T Consensus 21 ~lC~~C~~~l~~~--~~~C~~Cg~~~~~~~~~C~~C~~~ 57 (227)
T PRK11595 21 GICSVCSRALRTL--KTCCPQCGLPATHPHLPCGRCLQK 57 (227)
T ss_pred cccHHHHhhCCcc--cCcCccCCCcCCCCCCCcHHHHcC
Confidence 3799998888775 5789999974 48888653
No 218
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=39.17 E-value=18 Score=26.71 Aligned_cols=25 Identities=36% Similarity=0.852 Sum_probs=12.6
Q ss_pred cccccCccccCc---cccccccccCcee
Q 011140 430 KCTACGTDFSAF---VRKHHCRNCGDIF 454 (492)
Q Consensus 430 ~C~~C~~~Fs~~---~RRHHCR~CG~Vf 454 (492)
+|..|+.+...+ ....-|..||.|+
T Consensus 2 ~Cp~Cg~~~~~~D~~~g~~vC~~CG~Vl 29 (43)
T PF08271_consen 2 KCPNCGSKEIVFDPERGELVCPNCGLVL 29 (43)
T ss_dssp SBTTTSSSEEEEETTTTEEEETTT-BBE
T ss_pred CCcCCcCCceEEcCCCCeEECCCCCCEe
Confidence 577887654222 2233455555554
No 219
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=39.06 E-value=5.1 Score=34.61 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=27.2
Q ss_pred ccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHHHh
Q 011140 436 TDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVIDW 487 (492)
Q Consensus 436 ~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~~r 487 (492)
..++++..|.||.+|++.+ ...-.+|-.+.-...--|+.|.+.|..+
T Consensus 25 ~~~~i~~~rS~C~~C~~~L-----~~~~lIPi~S~l~lrGrCr~C~~~I~~~ 71 (92)
T PF06750_consen 25 PSLSIIFPRSHCPHCGHPL-----SWWDLIPILSYLLLRGRCRYCGAPIPPR 71 (92)
T ss_pred cCCCccCCCCcCcCCCCcC-----cccccchHHHHHHhCCCCcccCCCCChH
Confidence 5578888999999999865 2111122111112224578887765443
No 220
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=38.63 E-value=28 Score=42.54 Aligned_cols=12 Identities=42% Similarity=0.913 Sum_probs=7.0
Q ss_pred CCCCCCCCceEEeeC
Q 011140 204 LYDDGYGDGVYAYEG 218 (492)
Q Consensus 204 ~~~~~~~~~~~~~~~ 218 (492)
.+++.| +|-++|
T Consensus 271 ird~ny---~Ylf~~ 282 (2365)
T COG5178 271 IRDVNY---VYLFSG 282 (2365)
T ss_pred hccccE---EEEecC
Confidence 445555 776665
No 221
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=38.34 E-value=23 Score=29.85 Aligned_cols=31 Identities=23% Similarity=0.619 Sum_probs=23.3
Q ss_pred CccccccCccccCccccccccccCceeccCCCC
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTH 460 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~ 460 (492)
.+.|..|+++|+. ..-.--.||.+|...|..
T Consensus 78 ~~~C~vC~k~l~~--~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGN--SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCC--ceEEEeCCCeEEeccccc
Confidence 4579999998865 444555788999888864
No 222
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=38.28 E-value=15 Score=32.82 Aligned_cols=25 Identities=20% Similarity=0.592 Sum_probs=18.2
Q ss_pred CccccccCccccCccccccccccCc
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGD 452 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~ 452 (492)
.-.|..|+..|....+.-.|..||.
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs 94 (115)
T TIGR00100 70 ECECEDCSEEVSPEIDLYRCPKCHG 94 (115)
T ss_pred EEEcccCCCEEecCCcCccCcCCcC
Confidence 3489999999988765555666664
No 223
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=37.42 E-value=19 Score=26.75 Aligned_cols=30 Identities=30% Similarity=0.815 Sum_probs=21.3
Q ss_pred ccccccCccccCccccccccccCce-eccCCCC
Q 011140 429 SKCTACGTDFSAFVRKHHCRNCGDI-FCDKCTH 460 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~RRHHCR~CG~V-fC~kCS~ 460 (492)
..|..|++ .+...|.||..|... +|..|-.
T Consensus 5 ~~C~~C~~--~i~g~ry~C~~C~d~dlC~~Cf~ 35 (44)
T smart00291 5 YSCDTCGK--PIVGVRYHCLVCPDYDLCQSCFA 35 (44)
T ss_pred cCCCCCCC--CCcCCEEECCCCCCccchHHHHh
Confidence 46999998 456678899998443 6666644
No 224
>PRK14873 primosome assembly protein PriA; Provisional
Probab=36.92 E-value=13 Score=42.60 Aligned_cols=36 Identities=25% Similarity=0.673 Sum_probs=22.6
Q ss_pred ccccccCccccCc--cccccccccCce----eccCCCCCcEe
Q 011140 429 SKCTACGTDFSAF--VRKHHCRNCGDI----FCDKCTHGRIA 464 (492)
Q Consensus 429 ~~C~~C~~~Fs~~--~RRHHCR~CG~V----fC~kCS~~ri~ 464 (492)
-.|..|....++. .++-.|+.||.. .|..|.+..+.
T Consensus 393 ~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~ 434 (665)
T PRK14873 393 ARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLR 434 (665)
T ss_pred eECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcce
Confidence 3566676555543 235668888874 57778776543
No 225
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=36.83 E-value=19 Score=29.74 Aligned_cols=29 Identities=28% Similarity=0.911 Sum_probs=14.5
Q ss_pred cccccCccccCccccccc-cccCceeccCCCCCc
Q 011140 430 KCTACGTDFSAFVRKHHC-RNCGDIFCDKCTHGR 462 (492)
Q Consensus 430 ~C~~C~~~Fs~~~RRHHC-R~CG~VfC~kCS~~r 462 (492)
.|..|.. +.|.-+| -.|.++||+.|....
T Consensus 9 rCs~C~~----~l~~pv~l~~CeH~fCs~Ci~~~ 38 (65)
T PF14835_consen 9 RCSICFD----ILKEPVCLGGCEHIFCSSCIRDC 38 (65)
T ss_dssp S-SSS-S------SS-B---SSS--B-TTTGGGG
T ss_pred CCcHHHH----HhcCCceeccCccHHHHHHhHHh
Confidence 5777744 4566777 799999999998653
No 226
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=36.63 E-value=17 Score=37.98 Aligned_cols=25 Identities=28% Similarity=0.648 Sum_probs=17.4
Q ss_pred CccccccCccccCccccccccccCcee
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIF 454 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~Vf 454 (492)
...|..|+. =.--|-|||+-|++.+
T Consensus 109 ~~~C~~C~~--~KP~RS~HC~~Cn~CV 133 (309)
T COG5273 109 ENFCSTCNI--YKPPRSHHCSICNRCV 133 (309)
T ss_pred ceecccccc--ccCCCCccchhhcchh
Confidence 457888864 2345889999887743
No 227
>PRK12286 rpmF 50S ribosomal protein L32; Reviewed
Probab=36.01 E-value=20 Score=28.64 Aligned_cols=20 Identities=35% Similarity=0.986 Sum_probs=13.3
Q ss_pred CccccccCccccCcccccc-ccccC
Q 011140 428 VSKCTACGTDFSAFVRKHH-CRNCG 451 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHH-CR~CG 451 (492)
...|..|+. +.+.|| |..||
T Consensus 27 l~~C~~CG~----~~~~H~vC~~CG 47 (57)
T PRK12286 27 LVECPNCGE----PKLPHRVCPSCG 47 (57)
T ss_pred ceECCCCCC----ccCCeEECCCCC
Confidence 457888876 455555 66666
No 228
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=35.78 E-value=23 Score=41.21 Aligned_cols=34 Identities=21% Similarity=0.710 Sum_probs=22.9
Q ss_pred cccccCccccCc--cccccccccCce-----eccCCCCCcE
Q 011140 430 KCTACGTDFSAF--VRKHHCRNCGDI-----FCDKCTHGRI 463 (492)
Q Consensus 430 ~C~~C~~~Fs~~--~RRHHCR~CG~V-----fC~kCS~~ri 463 (492)
.|..|...+++. .++-.|++||+- .|..|.+..+
T Consensus 446 ~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L 486 (730)
T COG1198 446 ECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHL 486 (730)
T ss_pred cCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCee
Confidence 677776655543 455568888876 7888877644
No 229
>PF02945 Endonuclease_7: Recombination endonuclease VII; InterPro: IPR004211 This family of proteins which includes Bacteriophage T4 endonuclease VII, Mycobacteriophage D29 gene 59, and other as yet uncharacterised proteins. The T4 endonuclease VII (Endo VII) recognises a broad spectrum of DNA substrates ranging from branched DNAs to single base mismatches. The structure of this enzyme has been resolved and it was found that the monomers form an elongated, intertwined molecular dimer that exibits extreme domain swapping. Two pairs of antiparallel helices which form a novel 'four-helix cross' motif are the major dimerisation elements [].; PDB: 3GOX_A 3FC3_A 1EN7_B 1E7L_B 2QNF_A 2QNC_A 1E7D_A.
Probab=35.25 E-value=11 Score=31.99 Aligned_cols=32 Identities=25% Similarity=0.744 Sum_probs=18.7
Q ss_pred ccccccCccccCccc---cccccccCce---eccCCCC
Q 011140 429 SKCTACGTDFSAFVR---KHHCRNCGDI---FCDKCTH 460 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~R---RHHCR~CG~V---fC~kCS~ 460 (492)
..|.+|++.+....+ .-||..||.| +|..|-.
T Consensus 23 ~~C~iC~~~~~~~~~~~~vDHdH~tG~vRGlLC~~CN~ 60 (81)
T PF02945_consen 23 GRCAICGKPLPGESRKLVVDHDHKTGRVRGLLCRSCNT 60 (81)
T ss_dssp TE-TTT-SEEETTCGGCEEEE-TTTTBEEEEEEHHHHH
T ss_pred CcCcCCCCCcccCCCcceecCCCCCCCchhhhhhHHhh
Confidence 489999984443333 4578888886 6666643
No 230
>KOG3795 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.06 E-value=18 Score=35.50 Aligned_cols=24 Identities=25% Similarity=0.791 Sum_probs=18.3
Q ss_pred cccCccccccccccCc---eeccCCCC
Q 011140 437 DFSAFVRKHHCRNCGD---IFCDKCTH 460 (492)
Q Consensus 437 ~Fs~~~RRHHCR~CG~---VfC~kCS~ 460 (492)
.|..+..||.|+.||. +||-.|.-
T Consensus 8 ~~d~ieGRs~C~~C~~SRkFfCY~C~V 34 (230)
T KOG3795|consen 8 SFDPIEGRSTCPGCKSSRKFFCYDCRV 34 (230)
T ss_pred ccCcccccccCCCCCCcceEEEEeecc
Confidence 3556677899999985 58999864
No 231
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=34.82 E-value=23 Score=42.76 Aligned_cols=55 Identities=18% Similarity=0.388 Sum_probs=38.6
Q ss_pred cCcCCccccccCccccCcc---ccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHH
Q 011140 424 PDEAVSKCTACGTDFSAFV---RKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVI 485 (492)
Q Consensus 424 pD~~v~~C~~C~~~Fs~~~---RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~ 485 (492)
..-....|.+|+-..++.. --.-|..||.-||..|.+++. .+-..+|-.|....+
T Consensus 13 ~~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr-------~eG~q~CPqCktrYk 70 (1079)
T PLN02638 13 KHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYER-------KDGNQSCPQCKTKYK 70 (1079)
T ss_pred cccCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhh-------hcCCccCCccCCchh
Confidence 3344669999997766542 136799999999999998763 234467777865543
No 232
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.34 E-value=8.6 Score=36.28 Aligned_cols=33 Identities=24% Similarity=0.485 Sum_probs=26.3
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEe
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIA 464 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~ 464 (492)
.-.|.+|-..|..- ..-.||+.||..|...-+.
T Consensus 13 ~~~C~iC~~~~~~p----~~l~C~H~~c~~C~~~~~~ 45 (386)
T KOG2177|consen 13 ELTCPICLEYFREP----VLLPCGHNFCRACLTRSWE 45 (386)
T ss_pred cccChhhHHHhhcC----ccccccchHhHHHHHHhcC
Confidence 34899999888765 6678999999999886554
No 233
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=34.13 E-value=70 Score=41.02 Aligned_cols=11 Identities=9% Similarity=0.141 Sum_probs=4.8
Q ss_pred CccccccccCC
Q 011140 234 SNSTLFDDYGR 244 (492)
Q Consensus 234 ~~~a~~~d~~~ 244 (492)
+|.-+|=.||+
T Consensus 1807 l~~GVmaGYgn 1817 (2039)
T PRK15319 1807 VTVGVMASYIN 1817 (2039)
T ss_pred EEEEEEEEecc
Confidence 44444444433
No 234
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=34.10 E-value=13 Score=33.06 Aligned_cols=25 Identities=28% Similarity=0.812 Sum_probs=17.6
Q ss_pred CccccccCccccCccccccccccCc
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGD 452 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~ 452 (492)
.-.|..|+..|..-..+-.|.+||.
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs 94 (113)
T PF01155_consen 70 RARCRDCGHEFEPDEFDFSCPRCGS 94 (113)
T ss_dssp EEEETTTS-EEECHHCCHH-SSSSS
T ss_pred cEECCCCCCEEecCCCCCCCcCCcC
Confidence 3479999999998776666777765
No 235
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=33.95 E-value=21 Score=32.46 Aligned_cols=26 Identities=27% Similarity=0.907 Sum_probs=15.7
Q ss_pred ccccccCccccCccc----cccccccCcee
Q 011140 429 SKCTACGTDFSAFVR----KHHCRNCGDIF 454 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~R----RHHCR~CG~Vf 454 (492)
-.|..|+..+....| ++.|+.||..+
T Consensus 124 ~~C~~C~~~~~r~~~~~~~~~~C~~C~~~l 153 (157)
T PF10263_consen 124 YRCPSCGREYKRHRRSKRKRYRCGRCGGPL 153 (157)
T ss_pred EEcCCCCCEeeeecccchhhEECCCCCCEE
Confidence 367778766544333 55677777543
No 236
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=33.53 E-value=17 Score=27.29 Aligned_cols=30 Identities=37% Similarity=0.924 Sum_probs=16.9
Q ss_pred CccccccCccccCccccccccccCce-eccCC
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDI-FCDKC 458 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~V-fC~kC 458 (492)
...|..|++. .+...|.||..|-.. +|..|
T Consensus 4 ~~~C~~C~~~-~i~g~Ry~C~~C~d~dLC~~C 34 (46)
T PF00569_consen 4 GYTCDGCGTD-PIIGVRYHCLVCPDYDLCEDC 34 (46)
T ss_dssp SCE-SSS-SS-SEESSEEEESSSSS-EEEHHH
T ss_pred CeECcCCCCC-cCcCCeEECCCCCCCchhhHH
Confidence 3478899874 344568888888532 44444
No 237
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.38 E-value=4.5e+02 Score=32.24 Aligned_cols=16 Identities=19% Similarity=0.090 Sum_probs=8.2
Q ss_pred CCCCCCCCCCCCCCCC
Q 011140 47 GYPQNYPPYPQNSDPV 62 (492)
Q Consensus 47 ~~~~~~~~~~~~~~~~ 62 (492)
.|+...-+|++++..+
T Consensus 828 ~~~~~~~~~~S~p~~~ 843 (1049)
T KOG0307|consen 828 QYSQPPAAPPSFPYAP 843 (1049)
T ss_pred cCCCCCCCCccCCCCC
Confidence 4444444555555543
No 238
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=33.14 E-value=19 Score=26.88 Aligned_cols=31 Identities=23% Similarity=0.544 Sum_probs=24.1
Q ss_pred cccccCccccCccccccccccC-ceeccCCCCCc
Q 011140 430 KCTACGTDFSAFVRKHHCRNCG-DIFCDKCTHGR 462 (492)
Q Consensus 430 ~C~~C~~~Fs~~~RRHHCR~CG-~VfC~kCS~~r 462 (492)
.|..|++ .+...|.||..|- .-+|..|-...
T Consensus 2 ~C~~C~~--~i~g~r~~C~~C~d~dLC~~Cf~~~ 33 (46)
T cd02249 2 SCDGCLK--PIVGVRYHCLVCEDFDLCSSCYAKG 33 (46)
T ss_pred CCcCCCC--CCcCCEEECCCCCCCcCHHHHHCcC
Confidence 5889998 4456899999998 55888887754
No 239
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=33.07 E-value=21 Score=26.66 Aligned_cols=31 Identities=19% Similarity=0.557 Sum_probs=24.5
Q ss_pred cccccCccccCcccccccccc-CceeccCCCCCc
Q 011140 430 KCTACGTDFSAFVRKHHCRNC-GDIFCDKCTHGR 462 (492)
Q Consensus 430 ~C~~C~~~Fs~~~RRHHCR~C-G~VfC~kCS~~r 462 (492)
.|..|++ .++..|.+|..| ..-+|..|-...
T Consensus 2 ~Cd~C~~--~i~G~ry~C~~C~d~dLC~~C~~~~ 33 (43)
T cd02340 2 ICDGCQG--PIVGVRYKCLVCPDYDLCESCEAKG 33 (43)
T ss_pred CCCCCCC--cCcCCeEECCCCCCccchHHhhCcC
Confidence 5889998 567789999999 566899886643
No 240
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.93 E-value=23 Score=39.22 Aligned_cols=35 Identities=23% Similarity=0.608 Sum_probs=23.9
Q ss_pred cccccCccccC--ccccccccccCce-----eccCCCCCcEe
Q 011140 430 KCTACGTDFSA--FVRKHHCRNCGDI-----FCDKCTHGRIA 464 (492)
Q Consensus 430 ~C~~C~~~Fs~--~~RRHHCR~CG~V-----fC~kCS~~ri~ 464 (492)
.|..|....+. -.++-.|..||.. .|..|.+..+.
T Consensus 224 ~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~ 265 (505)
T TIGR00595 224 CCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLV 265 (505)
T ss_pred CCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeE
Confidence 57777654443 3456778899887 68888876544
No 241
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=32.61 E-value=19 Score=25.53 Aligned_cols=13 Identities=31% Similarity=1.009 Sum_probs=8.2
Q ss_pred cccccCccccCcc
Q 011140 430 KCTACGTDFSAFV 442 (492)
Q Consensus 430 ~C~~C~~~Fs~~~ 442 (492)
.|..|+..|.++.
T Consensus 7 ~C~~Cg~~fe~~~ 19 (41)
T smart00834 7 RCEDCGHTFEVLQ 19 (41)
T ss_pred EcCCCCCEEEEEE
Confidence 5667777666543
No 242
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=32.61 E-value=21 Score=32.00 Aligned_cols=25 Identities=20% Similarity=0.521 Sum_probs=17.3
Q ss_pred CccccccCccccCccccc-cccccCc
Q 011140 428 VSKCTACGTDFSAFVRKH-HCRNCGD 452 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRH-HCR~CG~ 452 (492)
.-.|..|+..|....+.. +|..||.
T Consensus 71 ~~~C~~Cg~~~~~~~~~~~~CP~Cgs 96 (117)
T PRK00564 71 ELECKDCSHVFKPNALDYGVCEKCHS 96 (117)
T ss_pred EEEhhhCCCccccCCccCCcCcCCCC
Confidence 347999999888764433 4666664
No 243
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=32.33 E-value=24 Score=26.69 Aligned_cols=23 Identities=30% Similarity=0.723 Sum_probs=15.5
Q ss_pred cccccCccccCcc-ccccccccCc
Q 011140 430 KCTACGTDFSAFV-RKHHCRNCGD 452 (492)
Q Consensus 430 ~C~~C~~~Fs~~~-RRHHCR~CG~ 452 (492)
.|..|+..|.+-. -.-.|+.||.
T Consensus 4 ~C~~Cg~~~~~~~~~~irC~~CG~ 27 (44)
T smart00659 4 ICGECGRENEIKSKDVVRCRECGY 27 (44)
T ss_pred ECCCCCCEeecCCCCceECCCCCc
Confidence 6889999888762 2445666654
No 244
>PTZ00073 60S ribosomal protein L37; Provisional
Probab=31.79 E-value=23 Score=31.04 Aligned_cols=23 Identities=39% Similarity=0.930 Sum_probs=13.6
Q ss_pred ccccccCccccCccccccccccCc
Q 011140 429 SKCTACGTDFSAFVRKHHCRNCGD 452 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~RRHHCR~CG~ 452 (492)
..|..|++. ++..+|+.|..||.
T Consensus 17 tlCrRCG~~-syH~qK~~CasCGy 39 (91)
T PTZ00073 17 TLCRRCGKR-SFHVQKKRCASCGY 39 (91)
T ss_pred chhcccCcc-ccccccccchhcCC
Confidence 467777642 22345666777776
No 245
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=31.65 E-value=12 Score=43.93 Aligned_cols=38 Identities=29% Similarity=0.631 Sum_probs=19.8
Q ss_pred cccccccCceeccCCCCCcEecccCCCCCceecccchHHH
Q 011140 444 KHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVG 483 (492)
Q Consensus 444 RHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~ 483 (492)
||.||.|++||= .=|..++-+-.+-+.+|. +|+.|-..
T Consensus 353 khkCr~Cakvfg-S~SaLqiHlRSHTGERPf-qCnvCG~~ 390 (958)
T KOG1074|consen 353 KHKCRFCAKVFG-SDSALQIHLRSHTGERPF-QCNVCGNR 390 (958)
T ss_pred cchhhhhHhhcC-chhhhhhhhhccCCCCCe-eecccccc
Confidence 678888888772 223334444433333332 46666544
No 246
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=31.26 E-value=22 Score=27.38 Aligned_cols=32 Identities=28% Similarity=0.688 Sum_probs=23.3
Q ss_pred cccccCccccCccccccccccC---ceeccCCCCCc
Q 011140 430 KCTACGTDFSAFVRKHHCRNCG---DIFCDKCTHGR 462 (492)
Q Consensus 430 ~C~~C~~~Fs~~~RRHHCR~CG---~VfC~kCS~~r 462 (492)
.|..|++ ..+...|.||..|. .-+|..|-...
T Consensus 2 ~Cd~C~~-~pI~G~R~~C~~C~~~d~DlC~~C~~~~ 36 (48)
T cd02341 2 KCDSCGI-EPIPGTRYHCSECDDGDFDLCQDCVVKG 36 (48)
T ss_pred CCCCCCC-CccccceEECCCCCCCCCccCHHHHhCc
Confidence 4888886 23457899999998 55888886543
No 247
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=30.98 E-value=15 Score=32.56 Aligned_cols=53 Identities=23% Similarity=0.527 Sum_probs=31.4
Q ss_pred CccccccCccccCccccccc------ccc---CceeccCCCCCcEecccC-CCCCceecccchHH
Q 011140 428 VSKCTACGTDFSAFVRKHHC------RNC---GDIFCDKCTHGRIALTAD-ANAQPVRVCDRCMV 482 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHC------R~C---G~VfC~kCS~~ri~Lp~~-~s~kpvRVC~~Cy~ 482 (492)
...|..|+++-. ..+..| ..| ...||..|...+...... ...+..-+|-.|..
T Consensus 7 g~~CHqCrqKt~--~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 7 GKTCHQCRQKTL--DFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCchhhcCCCC--CCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 568999976432 222333 555 899999999876543211 11234566766654
No 248
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=30.80 E-value=19 Score=39.20 Aligned_cols=27 Identities=30% Similarity=0.795 Sum_probs=23.7
Q ss_pred CccccccCccccCccccccccccCcee
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIF 454 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~Vf 454 (492)
..+|..|++.|..-.+.++|+.||..+
T Consensus 5 ~~rc~~cg~~f~~a~~~~~c~~cGl~l 31 (411)
T COG0498 5 SLRCLKCGREFSQALLQGLCPDCGLFL 31 (411)
T ss_pred EeecCCCCcchhhHHhhCcCCcCCccc
Confidence 358999999999777899999999976
No 249
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=30.54 E-value=33 Score=31.69 Aligned_cols=13 Identities=23% Similarity=0.728 Sum_probs=9.0
Q ss_pred CccccccCccccC
Q 011140 428 VSKCTACGTDFSA 440 (492)
Q Consensus 428 v~~C~~C~~~Fs~ 440 (492)
-+.|..|+..+-.
T Consensus 91 ~sRC~~CN~~L~~ 103 (147)
T PF01927_consen 91 FSRCPKCNGPLRP 103 (147)
T ss_pred CCccCCCCcEeee
Confidence 4688888875543
No 250
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=30.22 E-value=22 Score=37.07 Aligned_cols=67 Identities=22% Similarity=0.545 Sum_probs=41.7
Q ss_pred CCCcccCcCCccccccCcc----ccCc------cccccccccC------ceeccCCCCCcE----eccc-CCCCCceecc
Q 011140 419 KDHWVPDEAVSKCTACGTD----FSAF------VRKHHCRNCG------DIFCDKCTHGRI----ALTA-DANAQPVRVC 477 (492)
Q Consensus 419 ~p~WvpD~~v~~C~~C~~~----Fs~~------~RRHHCR~CG------~VfC~kCS~~ri----~Lp~-~~s~kpvRVC 477 (492)
...|++.+.+..|..|+.. |-.+ -|=-||..|- |+-|..|-+.+- .+.. .......-+|
T Consensus 176 ~~~~~e~e~~~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~VR~KC~nC~~t~~l~y~sl~s~E~A~vkAEtC 255 (308)
T COG3058 176 GKARVENESRQYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHYVRVKCSNCEQSKKLHYWSLESSELAAVKAETC 255 (308)
T ss_pred ccccccccccccCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHHHHHHhccccccCCccceeccchhhhHhhhhcC
Confidence 4568888889999999853 2222 2677999885 567777766432 2221 1112234679
Q ss_pred cchHHHHH
Q 011140 478 DRCMVGVI 485 (492)
Q Consensus 478 ~~Cy~~L~ 485 (492)
.+|..-|+
T Consensus 256 ~~C~sYlK 263 (308)
T COG3058 256 GDCNSYLK 263 (308)
T ss_pred CcHHHHHH
Confidence 99976543
No 251
>PLN02400 cellulose synthase
Probab=30.19 E-value=29 Score=42.04 Aligned_cols=55 Identities=18% Similarity=0.425 Sum_probs=38.8
Q ss_pred ccCcCCccccccCccccCcc---ccccccccCceeccCCCCCcEecccCCCCCceecccchHHHH
Q 011140 423 VPDEAVSKCTACGTDFSAFV---RKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGV 484 (492)
Q Consensus 423 vpD~~v~~C~~C~~~Fs~~~---RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L 484 (492)
+.+-....|.+|+-..++.. =-.-|..||.-||..|.+++. .+-..+|..|....
T Consensus 31 ~~~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYER-------keGnq~CPQCkTrY 88 (1085)
T PLN02400 31 LKNLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYER-------KDGTQCCPQCKTRY 88 (1085)
T ss_pred ccccCCceeeecccccCcCCCCCEEEEEccCCCccccchhheec-------ccCCccCcccCCcc
Confidence 34445679999997766542 136799999999999998763 23446777776554
No 252
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=29.99 E-value=7.4 Score=33.22 Aligned_cols=51 Identities=22% Similarity=0.476 Sum_probs=22.1
Q ss_pred CCccccccCccccCccc---cccccccCceeccCCCCCcEecccCCCCCceecccchHHHH
Q 011140 427 AVSKCTACGTDFSAFVR---KHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGV 484 (492)
Q Consensus 427 ~v~~C~~C~~~Fs~~~R---RHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L 484 (492)
....|.+|+-..++..- =.-|..|+.-+|..|..++. ..-..+|..|....
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYEr-------keg~q~CpqCkt~y 61 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYER-------KEGNQVCPQCKTRY 61 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHH-------HTS-SB-TTT--B-
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHh-------hcCcccccccCCCc
Confidence 35689999977766432 34699999999999998763 23456788887544
No 253
>PF10892 DUF2688: Protein of unknown function (DUF2688); InterPro: IPR024392 Members of this protein family are annotated as KleB, and may play a role in the regulation of transcription in plasmids.
Probab=29.92 E-value=18 Score=29.16 Aligned_cols=10 Identities=40% Similarity=1.095 Sum_probs=6.7
Q ss_pred ccccccCcee
Q 011140 445 HHCRNCGDIF 454 (492)
Q Consensus 445 HHCR~CG~Vf 454 (492)
.|||+||+-+
T Consensus 11 t~CrRCGk~i 20 (60)
T PF10892_consen 11 TPCRRCGKSI 20 (60)
T ss_pred ehhhhhCccH
Confidence 5677777743
No 254
>PRK05978 hypothetical protein; Provisional
Probab=29.44 E-value=28 Score=32.96 Aligned_cols=27 Identities=44% Similarity=1.014 Sum_probs=19.7
Q ss_pred CccccccC--ccccCc-cccccccccCcee
Q 011140 428 VSKCTACG--TDFSAF-VRKHHCRNCGDIF 454 (492)
Q Consensus 428 v~~C~~C~--~~Fs~~-~RRHHCR~CG~Vf 454 (492)
.-+|..|+ +-|.-+ .=+.+|.+||.-|
T Consensus 33 ~grCP~CG~G~LF~g~Lkv~~~C~~CG~~~ 62 (148)
T PRK05978 33 RGRCPACGEGKLFRAFLKPVDHCAACGEDF 62 (148)
T ss_pred cCcCCCCCCCcccccccccCCCccccCCcc
Confidence 45899997 456543 4478899999865
No 255
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=29.44 E-value=7.1 Score=25.91 Aligned_cols=16 Identities=31% Similarity=0.873 Sum_probs=12.3
Q ss_pred ccccCceeccCCCCCc
Q 011140 447 CRNCGDIFCDKCTHGR 462 (492)
Q Consensus 447 CR~CG~VfC~kCS~~r 462 (492)
-..||.+||..|....
T Consensus 13 ~~~C~H~~c~~C~~~~ 28 (39)
T smart00184 13 VLPCGHTFCRSCIRKW 28 (39)
T ss_pred EecCCChHHHHHHHHH
Confidence 3469999999997754
No 256
>PF10170 C6_DPF: Cysteine-rich domain; InterPro: IPR018785 This entry represents the N-terminal approximately 100 amino acids of a family of proteins found in a range of organisms, including human, chicken and Drosophila [, , ]. It contains between six and eight highly conserved cysteine residues and a characteristic DPF sequence motif. One member is putatively named as receptor for egg jelly protein but this could not confirmed.
Probab=29.08 E-value=26 Score=31.06 Aligned_cols=33 Identities=27% Similarity=0.572 Sum_probs=25.1
Q ss_pred ccccccccccCceeccC--CCCCcEecccCCCCCceecccchHHH
Q 011140 441 FVRKHHCRNCGDIFCDK--CTHGRIALTADANAQPVRVCDRCMVG 483 (492)
Q Consensus 441 ~~RRHHCR~CG~VfC~k--CS~~ri~Lp~~~s~kpvRVC~~Cy~~ 483 (492)
+.---+|..||+.||.. ||-+. ..|.|..|...
T Consensus 46 LvLGa~CS~C~~~VC~~~~CSlFY----------tkrFC~pC~~~ 80 (97)
T PF10170_consen 46 LVLGAPCSICGKPVCVGQDCSLFY----------TKRFCLPCVKR 80 (97)
T ss_pred EEECccccccCCceEcCCCccEEe----------eCceeHHHHHH
Confidence 33457899999999965 87643 56899999864
No 257
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=28.96 E-value=6.3e+02 Score=30.00 Aligned_cols=25 Identities=40% Similarity=0.732 Sum_probs=16.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC
Q 011140 107 QPPQQPPAFYPPFDQHQTGPNYAPP 131 (492)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (492)
|++-+++.+-+||||.|-.|.-...
T Consensus 610 ~~~~s~~~~~pp~pq~~~~p~~~gr 634 (756)
T KOG2375|consen 610 QQPGSPPQFMPPYPQPQFSPSGNGR 634 (756)
T ss_pred cccccccccCCCCCCcccCCCcCCC
Confidence 3444556788888888877665433
No 258
>PF15616 TerY-C: TerY-C metal binding domain
Probab=28.93 E-value=26 Score=32.54 Aligned_cols=25 Identities=36% Similarity=1.108 Sum_probs=19.5
Q ss_pred CccccccCccccCccccccccccCceeccC
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDK 457 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~k 457 (492)
..-|..|+..|.+.. | .||+|+|..
T Consensus 77 ~PgCP~CGn~~~fa~----C-~CGkl~Ci~ 101 (131)
T PF15616_consen 77 APGCPHCGNQYAFAV----C-GCGKLFCID 101 (131)
T ss_pred CCCCCCCcChhcEEE----e-cCCCEEEeC
Confidence 358999999887653 5 799998854
No 259
>PF14353 CpXC: CpXC protein
Probab=28.91 E-value=29 Score=30.98 Aligned_cols=11 Identities=36% Similarity=1.047 Sum_probs=8.3
Q ss_pred cccccccCcee
Q 011140 444 KHHCRNCGDIF 454 (492)
Q Consensus 444 RHHCR~CG~Vf 454 (492)
.+.|-+||..+
T Consensus 38 ~~~CP~Cg~~~ 48 (128)
T PF14353_consen 38 SFTCPSCGHKF 48 (128)
T ss_pred EEECCCCCCce
Confidence 67788888765
No 260
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=28.87 E-value=26 Score=26.79 Aligned_cols=31 Identities=19% Similarity=0.521 Sum_probs=22.0
Q ss_pred cccccCccccCccccccccccCce-eccCCCCC
Q 011140 430 KCTACGTDFSAFVRKHHCRNCGDI-FCDKCTHG 461 (492)
Q Consensus 430 ~C~~C~~~Fs~~~RRHHCR~CG~V-fC~kCS~~ 461 (492)
.|..|+. +.+..+|.+|..|-.. +|..|-..
T Consensus 2 ~CDgCg~-~PI~G~RykC~~C~dyDLC~~C~~~ 33 (43)
T cd02342 2 QCDGCGV-LPITGPRYKSKVKEDYDLCTICFSR 33 (43)
T ss_pred CCCCCCC-CcccccceEeCCCCCCccHHHHhhh
Confidence 4778875 4456678999988766 77777553
No 261
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=28.87 E-value=18 Score=40.42 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=33.5
Q ss_pred ccCCCchhhhhhcccCCcccccccccccceEEEeeccC
Q 011140 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESG 294 (492)
Q Consensus 257 ~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G 294 (492)
||+.|..++|..||..|+|--.+|..|+||--|++.+.
T Consensus 437 aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~nkd 474 (591)
T KOG2505|consen 437 AAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSANKD 474 (591)
T ss_pred HHhcchHHHHHHHHHhcCCchhcccCCCCcccccccHH
Confidence 55666799999999999999999999999999998544
No 262
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=28.84 E-value=23 Score=26.17 Aligned_cols=11 Identities=36% Similarity=1.247 Sum_probs=5.0
Q ss_pred ccccCccccCc
Q 011140 431 CTACGTDFSAF 441 (492)
Q Consensus 431 C~~C~~~Fs~~ 441 (492)
|..|+..|..+
T Consensus 8 C~~Cg~~fe~~ 18 (42)
T PF09723_consen 8 CEECGHEFEVL 18 (42)
T ss_pred eCCCCCEEEEE
Confidence 44444444433
No 263
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=28.83 E-value=30 Score=32.02 Aligned_cols=27 Identities=22% Similarity=0.717 Sum_probs=18.2
Q ss_pred CccccccCccccCcc--------ccccccccCcee
Q 011140 428 VSKCTACGTDFSAFV--------RKHHCRNCGDIF 454 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~--------RRHHCR~CG~Vf 454 (492)
.=.|..|+.+|++.. ++-.|..||..+
T Consensus 99 ~Y~Cp~C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l 133 (147)
T smart00531 99 YYKCPNCQSKYTFLEANQLLDMDGTFTCPRCGEEL 133 (147)
T ss_pred EEECcCCCCEeeHHHHHHhcCCCCcEECCCCCCEE
Confidence 457999999998742 225566666554
No 264
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=28.70 E-value=27 Score=31.41 Aligned_cols=22 Identities=36% Similarity=0.824 Sum_probs=11.5
Q ss_pred cccccCccccCcc--ccccccccC
Q 011140 430 KCTACGTDFSAFV--RKHHCRNCG 451 (492)
Q Consensus 430 ~C~~C~~~Fs~~~--RRHHCR~CG 451 (492)
.|..|+..|..-. -...|-+||
T Consensus 4 ~CtrCG~vf~~g~~~il~GCp~CG 27 (112)
T COG3364 4 QCTRCGEVFDDGSEEILSGCPKCG 27 (112)
T ss_pred eecccccccccccHHHHccCcccc
Confidence 5666666665421 134455555
No 265
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=28.58 E-value=27 Score=31.19 Aligned_cols=24 Identities=17% Similarity=0.497 Sum_probs=17.8
Q ss_pred ccccccCccccCccccccccccCc
Q 011140 429 SKCTACGTDFSAFVRKHHCRNCGD 452 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~RRHHCR~CG~ 452 (492)
-.|..|+..|..-.+..-|-+||.
T Consensus 71 ~~C~~Cg~~~~~~~~~~~CP~Cgs 94 (113)
T PRK12380 71 AWCWDCSQVVEIHQHDAQCPHCHG 94 (113)
T ss_pred EEcccCCCEEecCCcCccCcCCCC
Confidence 479999998887655555777774
No 266
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=28.13 E-value=34 Score=29.85 Aligned_cols=29 Identities=31% Similarity=0.744 Sum_probs=19.5
Q ss_pred CccccccCccccCccc----cccccccCceeccCC
Q 011140 428 VSKCTACGTDFSAFVR----KHHCRNCGDIFCDKC 458 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~R----RHHCR~CG~VfC~kC 458 (492)
...|..|++. ...| ---|++||..|=.-+
T Consensus 35 ~~~Cp~C~~~--~VkR~a~GIW~C~kCg~~fAGga 67 (89)
T COG1997 35 KHVCPFCGRT--TVKRIATGIWKCRKCGAKFAGGA 67 (89)
T ss_pred CCcCCCCCCc--ceeeeccCeEEcCCCCCeecccc
Confidence 4589999886 2222 345999999884443
No 267
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=28.11 E-value=20 Score=36.59 Aligned_cols=54 Identities=33% Similarity=0.659 Sum_probs=26.3
Q ss_pred ccccccCccc--cCc-------cccccccccCc------eeccCCCCCcE-eccc----CCCCCceecccchHH
Q 011140 429 SKCTACGTDF--SAF-------VRKHHCRNCGD------IFCDKCTHGRI-ALTA----DANAQPVRVCDRCMV 482 (492)
Q Consensus 429 ~~C~~C~~~F--s~~-------~RRHHCR~CG~------VfC~kCS~~ri-~Lp~----~~s~kpvRVC~~Cy~ 482 (492)
..|..|+..= +.+ .|..||..||. +-|..|.+... .+.. ......+-||+.|..
T Consensus 173 g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~~~e~~~~~rve~C~~C~~ 246 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTDHEKLEYFTVEGEPAYRVEVCESCGS 246 (290)
T ss_dssp SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---SS-EEE--------SEEEEEETTTTE
T ss_pred CcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCCCcceeeEecCCCCcEEEEECCcccc
Confidence 5899998642 211 37889999984 58999987532 1111 122235567999975
No 268
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.80 E-value=15 Score=37.07 Aligned_cols=49 Identities=20% Similarity=0.505 Sum_probs=28.1
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHH
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVI 485 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~ 485 (492)
--.|.+|-. +.+---=-.||++||+-|...+...- .-..+|-.|...++
T Consensus 47 ~FdCNICLd----~akdPVvTlCGHLFCWpClyqWl~~~-----~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 47 FFDCNICLD----LAKDPVVTLCGHLFCWPCLYQWLQTR-----PNSKECPVCKAEVS 95 (230)
T ss_pred ceeeeeecc----ccCCCEEeecccceehHHHHHHHhhc-----CCCeeCCccccccc
Confidence 346888832 11111124899999999988654322 23345666665543
No 269
>PF14445 Prok-RING_2: Prokaryotic RING finger family 2
Probab=27.55 E-value=9.5 Score=30.23 Aligned_cols=45 Identities=20% Similarity=0.513 Sum_probs=32.9
Q ss_pred cccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHHH
Q 011140 430 KCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVID 486 (492)
Q Consensus 430 ~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~~ 486 (492)
+|..|...|.+.. -..|-.||+--|..|-. +.--.|+.|-..|+-
T Consensus 9 ~CDLCn~~~p~~~-LRQCvlCGRWaC~sCW~-----------deYY~CksC~Gii~l 53 (57)
T PF14445_consen 9 SCDLCNSSHPISE-LRQCVLCGRWACNSCWQ-----------DEYYTCKSCNGIINL 53 (57)
T ss_pred hHHhhcccCcHHH-HHHHhhhchhhhhhhhh-----------hhHhHHHhhhchhhh
Confidence 6889998887543 45799999999999954 234467777766543
No 270
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=27.46 E-value=32 Score=30.11 Aligned_cols=31 Identities=23% Similarity=0.483 Sum_probs=20.6
Q ss_pred CccccccCccccCccc----cccccccCceeccCCCC
Q 011140 428 VSKCTACGTDFSAFVR----KHHCRNCGDIFCDKCTH 460 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~R----RHHCR~CG~VfC~kCS~ 460 (492)
...|..|++ ..+.| --+|+.||..|-.-...
T Consensus 36 ~y~CpfCgk--~~vkR~a~GIW~C~~C~~~~AGGAy~ 70 (90)
T PTZ00255 36 KYFCPFCGK--HAVKRQAVGIWRCKGCKKTVAGGAWT 70 (90)
T ss_pred CccCCCCCC--CceeeeeeEEEEcCCCCCEEeCCccc
Confidence 458999974 22333 46899999998655433
No 271
>PF06221 zf-C2HC5: Putative zinc finger motif, C2HC5-type; InterPro: IPR009349 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This zinc finger appears to be common in activating signal cointegrator 1/thyroid receptor interacting protein 4. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.28 E-value=36 Score=27.36 Aligned_cols=15 Identities=40% Similarity=1.116 Sum_probs=11.8
Q ss_pred ccccccccCceeccC
Q 011140 443 RKHHCRNCGDIFCDK 457 (492)
Q Consensus 443 RRHHCR~CG~VfC~k 457 (492)
---+|-.||+|+|.+
T Consensus 17 ~~~NCl~CGkIiC~~ 31 (57)
T PF06221_consen 17 YAPNCLNCGKIICEQ 31 (57)
T ss_pred ccccccccChhhccc
Confidence 356788999999876
No 272
>PRK04179 rpl37e 50S ribosomal protein L37e; Reviewed
Probab=27.12 E-value=29 Score=28.46 Aligned_cols=23 Identities=43% Similarity=0.879 Sum_probs=14.8
Q ss_pred ccccccCccccCccccccccccCc
Q 011140 429 SKCTACGTDFSAFVRKHHCRNCGD 452 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~RRHHCR~CG~ 452 (492)
..|..|++. ++..+|+-|..||.
T Consensus 18 t~CrRCG~~-syh~qK~~CasCGy 40 (62)
T PRK04179 18 IRCRRCGRH-SYNVRKKYCAACGF 40 (62)
T ss_pred chhcccCcc-cccccccchhhcCC
Confidence 367777654 44556777777775
No 273
>PF05458 Siva: Cd27 binding protein (Siva); InterPro: IPR022773 Siva binds to the CD27 cytoplasmic tail. It has a DD homology region, a box-B-like ring finger, and a zinc finger-like domain. Overexpression of Siva in various cell lines induces apoptosis, suggesting an important role for Siva in the CD27-transduced apoptotic pathway []. Siva-1 binds to and inhibits BCL-X(L)-mediated protection against UV radiation-induced apoptosis. Indeed, the unique amphipathic helical region (SAH) present in Siva-1 is required for its binding to BCL-X(L) and sensitising cells to UV radiation. Natural complexes of Siva-1/BCL-X(L) are detected in HUT78 and murine thymocyte, suggesting a potential role for Siva-1 in regulating T cell homeostasis []. This family contains both Siva-1 and the shorter Siva-2 lacking the sequence coded by exon 2. It has been suggested that Siva-2 could regulate the function of Siva-1 [].
Probab=27.09 E-value=20 Score=34.55 Aligned_cols=47 Identities=21% Similarity=0.653 Sum_probs=25.8
Q ss_pred ccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchH
Q 011140 429 SKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCM 481 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy 481 (492)
..|..|.+.+--.=. .-|..|+.+||..|+... . ......-.|..|-
T Consensus 125 ~~C~~Cdr~lC~~C~-~~C~~C~~~~Cs~Cs~~~----y-~~~~e~~lC~~C~ 171 (175)
T PF05458_consen 125 SVCSQCDRALCESCI-RSCSSCSEVFCSLCSTVN----Y-SDQYERVLCLSCS 171 (175)
T ss_pred ccccccCcHHHHHHH-hhhhchhhhhhcCccccc----c-CCcccccccCCCC
Confidence 345555443322211 228899999999998642 1 1223445577773
No 274
>PRK00420 hypothetical protein; Validated
Probab=26.65 E-value=40 Score=30.55 Aligned_cols=25 Identities=20% Similarity=0.538 Sum_probs=15.5
Q ss_pred ccccccCccccCc-cccccccccCce
Q 011140 429 SKCTACGTDFSAF-VRKHHCRNCGDI 453 (492)
Q Consensus 429 ~~C~~C~~~Fs~~-~RRHHCR~CG~V 453 (492)
..|..|+..|.-+ ..+.-|-.||.+
T Consensus 24 ~~CP~Cg~pLf~lk~g~~~Cp~Cg~~ 49 (112)
T PRK00420 24 KHCPVCGLPLFELKDGEVVCPVHGKV 49 (112)
T ss_pred CCCCCCCCcceecCCCceECCCCCCe
Confidence 4799999766543 344455555554
No 275
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=26.61 E-value=39 Score=24.53 Aligned_cols=9 Identities=44% Similarity=1.195 Sum_probs=3.2
Q ss_pred ceecccchH
Q 011140 473 PVRVCDRCM 481 (492)
Q Consensus 473 pvRVC~~Cy 481 (492)
..+||+.|.
T Consensus 23 ~~~VCD~CR 31 (34)
T PF01286_consen 23 DLPVCDKCR 31 (34)
T ss_dssp S-S--TTT-
T ss_pred Ccccccccc
Confidence 456666664
No 276
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=26.45 E-value=24 Score=25.01 Aligned_cols=30 Identities=30% Similarity=0.701 Sum_probs=20.0
Q ss_pred ccccCccccCccccccccccCceeccCCCCCcE
Q 011140 431 CTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI 463 (492)
Q Consensus 431 C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri 463 (492)
|.+|...|.... .=..||..||..|....+
T Consensus 1 C~iC~~~~~~~~---~~~~C~H~fC~~C~~~~~ 30 (41)
T PF00097_consen 1 CPICLEPFEDPV---ILLPCGHSFCRDCLRKWL 30 (41)
T ss_dssp ETTTSSBCSSEE---EETTTSEEEEHHHHHHHH
T ss_pred CCcCCccccCCC---EEecCCCcchHHHHHHHH
Confidence 556666554433 346789999999987654
No 277
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=26.45 E-value=41 Score=23.30 Aligned_cols=24 Identities=25% Similarity=0.585 Sum_probs=12.7
Q ss_pred eccCCCCCcEecccCCCCCceecccchH
Q 011140 454 FCDKCTHGRIALTADANAQPVRVCDRCM 481 (492)
Q Consensus 454 fC~kCS~~ri~Lp~~~s~kpvRVC~~Cy 481 (492)
||..|........ ....|+|..|-
T Consensus 5 fC~~CG~~t~~~~----~g~~r~C~~Cg 28 (32)
T PF09297_consen 5 FCGRCGAPTKPAP----GGWARRCPSCG 28 (32)
T ss_dssp B-TTT--BEEE-S----SSS-EEESSSS
T ss_pred ccCcCCccccCCC----CcCEeECCCCc
Confidence 6777766555443 24789998884
No 278
>PF07776 zf-AD: Zinc-finger associated domain (zf-AD) ; InterPro: IPR012934 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The zf-AD domain, also known as ZAD, forms an atypical treble-cleft-like zinc co-ordinating fold. The zf-AD domain is thought to be involved in mediating dimer formation, but does not bind to DNA []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 1PZW_A.
Probab=26.34 E-value=67 Score=24.57 Aligned_cols=16 Identities=19% Similarity=0.603 Sum_probs=12.0
Q ss_pred CCceecccchHHHHHH
Q 011140 471 AQPVRVCDRCMVGVID 486 (492)
Q Consensus 471 ~kpvRVC~~Cy~~L~~ 486 (492)
..+..||..|+..|..
T Consensus 42 ~lp~~IC~~C~~~l~~ 57 (75)
T PF07776_consen 42 DLPQQICSSCWEKLQQ 57 (75)
T ss_dssp SS-SEEEHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 3567899999998754
No 279
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=26.34 E-value=31 Score=31.73 Aligned_cols=13 Identities=38% Similarity=0.889 Sum_probs=10.3
Q ss_pred ccccccCccccCc
Q 011140 429 SKCTACGTDFSAF 441 (492)
Q Consensus 429 ~~C~~C~~~Fs~~ 441 (492)
-.|..|+..|.+-
T Consensus 71 ~~C~~CG~~~~~~ 83 (135)
T PRK03824 71 LKCRNCGNEWSLK 83 (135)
T ss_pred EECCCCCCEEecc
Confidence 4799999888765
No 280
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=26.29 E-value=13 Score=43.25 Aligned_cols=12 Identities=50% Similarity=1.259 Sum_probs=6.2
Q ss_pred ccccccccCcee
Q 011140 443 RKHHCRNCGDIF 454 (492)
Q Consensus 443 RRHHCR~CG~Vf 454 (492)
||..|.-||+.|
T Consensus 280 RKFKCtECgKAF 291 (1007)
T KOG3623|consen 280 RKFKCTECGKAF 291 (1007)
T ss_pred ccccccccchhh
Confidence 455555555544
No 281
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.77 E-value=11 Score=42.98 Aligned_cols=50 Identities=18% Similarity=0.350 Sum_probs=35.8
Q ss_pred cccccCccccCccccccccccC-ceeccCCCCCcEecccCCCCCceecccch
Q 011140 430 KCTACGTDFSAFVRKHHCRNCG-DIFCDKCTHGRIALTADANAQPVRVCDRC 480 (492)
Q Consensus 430 ~C~~C~~~Fs~~~RRHHCR~CG-~VfC~kCS~~ri~Lp~~~s~kpvRVC~~C 480 (492)
.|..|-..|++..+.|+|++|| .|+|.-|+.-++-+.... ...+|+|..=
T Consensus 56 h~np~~~~~~~~~~d~cvkn~G~gv~~ei~tre~m~~~~~~-l~~~~~~e~v 106 (634)
T KOG1818|consen 56 HENPNVQLFTLKLTDHCVKNCGHGVHCEIATREFMDLLKSL-LESQRIHEEV 106 (634)
T ss_pred ccCCCcccchhhhHHHHHhcCCcchhHHHHHHHHHHHHHhh-hccccccchH
Confidence 5778889999999999999999 888888887655433322 2344455443
No 282
>PRK05580 primosome assembly protein PriA; Validated
Probab=25.47 E-value=46 Score=38.24 Aligned_cols=35 Identities=26% Similarity=0.825 Sum_probs=22.9
Q ss_pred cccccCccccC--ccccccccccCce-----eccCCCCCcEe
Q 011140 430 KCTACGTDFSA--FVRKHHCRNCGDI-----FCDKCTHGRIA 464 (492)
Q Consensus 430 ~C~~C~~~Fs~--~~RRHHCR~CG~V-----fC~kCS~~ri~ 464 (492)
+|..|...++. ..+.-.|+.||.. .|..|.+..+.
T Consensus 392 ~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~ 433 (679)
T PRK05580 392 ECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLV 433 (679)
T ss_pred CCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeE
Confidence 56666654443 3456678999886 68888776543
No 283
>PRK06260 threonine synthase; Validated
Probab=25.47 E-value=40 Score=35.88 Aligned_cols=25 Identities=28% Similarity=0.772 Sum_probs=20.3
Q ss_pred ccccccCccccCccccccccccCce
Q 011140 429 SKCTACGTDFSAFVRKHHCRNCGDI 453 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~RRHHCR~CG~V 453 (492)
-+|..|++.|..-.....|..||..
T Consensus 4 ~~C~~cg~~~~~~~~~~~Cp~cg~~ 28 (397)
T PRK06260 4 LKCIECGKEYDPDEIIYTCPECGGL 28 (397)
T ss_pred EEECCCCCCCCCCCccccCCCCCCe
Confidence 3799999999877667789889765
No 284
>KOG1313 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=25.45 E-value=23 Score=36.88 Aligned_cols=24 Identities=33% Similarity=0.674 Sum_probs=16.5
Q ss_pred CccccccCccccCccccccccccCce
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDI 453 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~V 453 (492)
.+.|..|... .--|-|||+-|++.
T Consensus 102 ~SfC~KC~~p--K~prTHHCsiC~kC 125 (309)
T KOG1313|consen 102 DSFCNKCNYP--KSPRTHHCSICNKC 125 (309)
T ss_pred ccHHhhcCCC--CCCCcchhhHHhhH
Confidence 4678888652 23577999888774
No 285
>PF08394 Arc_trans_TRASH: Archaeal TRASH domain; InterPro: IPR013603 This region is found in the C terminus of a number of archaeal transcriptional regulators. It is thought to function as a metal-sensing regulatory module [].
Probab=25.28 E-value=42 Score=24.82 Aligned_cols=37 Identities=22% Similarity=0.377 Sum_probs=22.8
Q ss_pred ccccCceeccCCCCCcEecccCCCCCceecccchHHHHHHhh
Q 011140 447 CRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVIDWL 488 (492)
Q Consensus 447 CR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~~r~ 488 (492)
|-.||..+-++=...++ +...-.-.|..|...+.+|+
T Consensus 1 Cd~CG~~I~~eP~~~k~-----~~~~y~fCC~tC~~~fk~k~ 37 (37)
T PF08394_consen 1 CDYCGGEITGEPIVVKI-----GNKVYYFCCPTCLSQFKKKL 37 (37)
T ss_pred CCccCCcccCCEEEEEE-----CCeEEEEECHHHHHHHHhhC
Confidence 56677777555333222 23334556899999988764
No 286
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=25.12 E-value=24 Score=41.68 Aligned_cols=28 Identities=29% Similarity=0.935 Sum_probs=0.0
Q ss_pred ccccccCccccCccccccccccCce-----eccCCCC
Q 011140 429 SKCTACGTDFSAFVRKHHCRNCGDI-----FCDKCTH 460 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~RRHHCR~CG~V-----fC~kCS~ 460 (492)
..|..|++. .-+..|..||.. +|..|-.
T Consensus 656 r~Cp~Cg~~----t~~~~Cp~CG~~T~~~~~Cp~C~~ 688 (900)
T PF03833_consen 656 RRCPKCGKE----TFYNRCPECGSHTEPVYVCPDCGI 688 (900)
T ss_dssp -------------------------------------
T ss_pred ccCcccCCc----chhhcCcccCCccccceecccccc
Confidence 467777642 223557777765 6666644
No 287
>PHA02926 zinc finger-like protein; Provisional
Probab=24.69 E-value=19 Score=36.48 Aligned_cols=59 Identities=17% Similarity=0.328 Sum_probs=31.9
Q ss_pred CcccCcCCccccccCccccCccccccc------cccCceeccCCCCCcEecccCCCCCceecccchHHH
Q 011140 421 HWVPDEAVSKCTACGTDFSAFVRKHHC------RNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVG 483 (492)
Q Consensus 421 ~WvpD~~v~~C~~C~~~Fs~~~RRHHC------R~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~ 483 (492)
.|...+ ..+|.+|-...-.- +.-.+ ..|+++||-.|......-.. ...-+|-|-.|-..
T Consensus 164 ~~~~Sk-E~eCgICmE~I~eK-~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~--~~~~~rsCPiCR~~ 228 (242)
T PHA02926 164 VYRVSK-EKECGICYEVVYSK-RLENDRYFGLLDSCNHIFCITCINIWHRTRR--ETGASDNCPICRTR 228 (242)
T ss_pred HHhccC-CCCCccCccccccc-cccccccccccCCCCchHHHHHHHHHHHhcc--ccCcCCcCCCCcce
Confidence 344333 35788886432100 11223 38999999999886543211 12345666666543
No 288
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=24.63 E-value=3.6e+02 Score=30.85 Aligned_cols=77 Identities=23% Similarity=0.391 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 011140 16 PNPNPAVDLQPRSYASAPPFSTSYSPSDYSGGYPQNYP-----PYPQNSDPVPPTAPSYTPATPTATPSSPNPNSLSSFN 90 (492)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (492)
.+|-....++|+++.--|+=...-+|+. .+...-.-+ ||.+.+.+|.|.||... .|.++.++...+.++||.+
T Consensus 181 ~~P~A~~~~pP~~~~~~p~~~~~~~p~~-ss~~~~~~~~~~~~p~~~~p~p~~P~ap~~~-~P~p~~~P~iq~~~~pp~p 258 (582)
T PF03276_consen 181 NIPGASIPPPPSSSSGLPPAASPSAPSA-SSTPGWRQPRVSYNPFLPPPSPVQPSAPPAS-IPAPPVPPPIQYVPPPPVP 258 (582)
T ss_pred CCCCCCCCCCCCCcCCCCCCcCCCCCCc-ccCccccCCccccCCCCCCCCCCCCCCCCcC-CCCCCCCCCCCCCCCCCCC
Q ss_pred CCCC
Q 011140 91 PIPP 94 (492)
Q Consensus 91 ~~~~ 94 (492)
++++
T Consensus 259 ~~~~ 262 (582)
T PF03276_consen 259 PPQP 262 (582)
T ss_pred Cccc
No 289
>PLN02436 cellulose synthase A
Probab=24.61 E-value=33 Score=41.55 Aligned_cols=55 Identities=18% Similarity=0.443 Sum_probs=38.1
Q ss_pred cCcCCccccccCccccCcc---ccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHH
Q 011140 424 PDEAVSKCTACGTDFSAFV---RKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVI 485 (492)
Q Consensus 424 pD~~v~~C~~C~~~Fs~~~---RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~ 485 (492)
..-....|.+|+-..++.. --.-|..||.-+|..|.++.. ..-..+|-.|.....
T Consensus 32 ~~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer-------~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 32 QELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYER-------REGNQACPQCKTRYK 89 (1094)
T ss_pred cccCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhh-------hcCCccCcccCCchh
Confidence 3444669999997665432 136799999999999998753 234567777765543
No 290
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=24.60 E-value=15 Score=37.98 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.1
Q ss_pred ccccccCcCCCCCCCcccccccc
Q 011140 220 KLEPYGARGTVPKSSNSTLFDDY 242 (492)
Q Consensus 220 ~~~~~~~~g~~~~~~~~a~~~d~ 242 (492)
.|==|||||||..+|-.|++..|
T Consensus 87 nVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 87 NVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred ceEEecCCCCChHHHHHHHHHHH
Confidence 34568999999999999999988
No 291
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=24.58 E-value=53 Score=24.52 Aligned_cols=25 Identities=32% Similarity=0.664 Sum_probs=13.8
Q ss_pred cccccCccccCc---c-ccccccccCcee
Q 011140 430 KCTACGTDFSAF---V-RKHHCRNCGDIF 454 (492)
Q Consensus 430 ~C~~C~~~Fs~~---~-RRHHCR~CG~Vf 454 (492)
.|..|+...-.- . .+..|+.||.++
T Consensus 2 FCp~Cg~~l~~~~~~~~~~~vC~~Cg~~~ 30 (52)
T smart00661 2 FCPKCGNMLIPKEGKEKRRFVCRKCGYEE 30 (52)
T ss_pred CCCCCCCccccccCCCCCEEECCcCCCeE
Confidence 477777533221 1 256677777654
No 292
>PRK12496 hypothetical protein; Provisional
Probab=24.50 E-value=40 Score=32.06 Aligned_cols=24 Identities=21% Similarity=0.617 Sum_probs=16.2
Q ss_pred cccccCccccCccccccccccCce
Q 011140 430 KCTACGTDFSAFVRKHHCRNCGDI 453 (492)
Q Consensus 430 ~C~~C~~~Fs~~~RRHHCR~CG~V 453 (492)
.|..|++.|..-.-+--|-.||.-
T Consensus 129 ~C~gC~~~~~~~~~~~~C~~CG~~ 152 (164)
T PRK12496 129 VCKGCKKKYPEDYPDDVCEICGSP 152 (164)
T ss_pred ECCCCCccccCCCCCCcCCCCCCh
Confidence 788888888654444567777754
No 293
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=24.30 E-value=33 Score=33.45 Aligned_cols=28 Identities=29% Similarity=0.729 Sum_probs=20.9
Q ss_pred CCCcccCcCCccccccCccccCccccccccccCce
Q 011140 419 KDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDI 453 (492)
Q Consensus 419 ~p~WvpD~~v~~C~~C~~~Fs~~~RRHHCR~CG~V 453 (492)
.-.|+- .|..|.+.|. .-++-|--||.-
T Consensus 135 v~~w~~-----rC~GC~~~f~--~~~~~Cp~CG~~ 162 (177)
T COG1439 135 VRKWRL-----RCHGCKRIFP--EPKDFCPICGSP 162 (177)
T ss_pred EeeeeE-----EEecCceecC--CCCCcCCCCCCc
Confidence 345654 8999999998 667778888763
No 294
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=24.02 E-value=36 Score=30.40 Aligned_cols=24 Identities=17% Similarity=0.634 Sum_probs=16.8
Q ss_pred ccccccCccccCcccc-ccccccCc
Q 011140 429 SKCTACGTDFSAFVRK-HHCRNCGD 452 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~RR-HHCR~CG~ 452 (492)
-.|..|+..|....+. -.|-.||.
T Consensus 71 ~~C~~Cg~~~~~~~~~~~~CP~Cgs 95 (114)
T PRK03681 71 CWCETCQQYVTLLTQRVRRCPQCHG 95 (114)
T ss_pred EEcccCCCeeecCCccCCcCcCcCC
Confidence 4799999988775443 34776664
No 295
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=23.97 E-value=32 Score=39.96 Aligned_cols=53 Identities=25% Similarity=0.444 Sum_probs=34.5
Q ss_pred CccccccC-ccccCcccccc-----ccccCceeccCCCCCcEecccCC---CCCceecccchHHHHH
Q 011140 428 VSKCTACG-TDFSAFVRKHH-----CRNCGDIFCDKCTHGRIALTADA---NAQPVRVCDRCMVGVI 485 (492)
Q Consensus 428 v~~C~~C~-~~Fs~~~RRHH-----CR~CG~VfC~kCS~~ri~Lp~~~---s~kpvRVC~~Cy~~L~ 485 (492)
.-.|..|. .-|+--+||++ |-+||--|.-- ..|+.+. .-....+|..|.+++.
T Consensus 68 ~a~C~~Cl~E~~dp~~Rry~YpF~nCt~CGPr~~i~-----~~lpydr~~t~m~~f~~C~~C~~ey~ 129 (711)
T TIGR00143 68 VATCSDCLEEMLDKNDRRYLYPFISCTHCGPRFTII-----EALPYDRENTSMADFPLCPDCAKEYK 129 (711)
T ss_pred hhhHHHHHHHhcCCCcccccCCcccccCCCCCeEEe-----ecCCCCCCCcCCCCCcCCHHHHHHhc
Confidence 45899996 45677888886 88888765221 1223221 2245688999988863
No 296
>PHA02942 putative transposase; Provisional
Probab=23.80 E-value=50 Score=35.39 Aligned_cols=27 Identities=30% Similarity=0.664 Sum_probs=19.5
Q ss_pred CccccccCccc-cCccccccccccCcee
Q 011140 428 VSKCTACGTDF-SAFVRKHHCRNCGDIF 454 (492)
Q Consensus 428 v~~C~~C~~~F-s~~~RRHHCR~CG~Vf 454 (492)
...|..|+..- .+-.|.+.|..||...
T Consensus 325 Sq~Cs~CG~~~~~l~~r~f~C~~CG~~~ 352 (383)
T PHA02942 325 SVSCPKCGHKMVEIAHRYFHCPSCGYEN 352 (383)
T ss_pred CccCCCCCCccCcCCCCEEECCCCCCEe
Confidence 56899998432 3345789999999864
No 297
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=23.78 E-value=46 Score=30.55 Aligned_cols=26 Identities=27% Similarity=0.819 Sum_probs=15.2
Q ss_pred ccccccCccccCcc-----ccccccccCcee
Q 011140 429 SKCTACGTDFSAFV-----RKHHCRNCGDIF 454 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~-----RRHHCR~CG~Vf 454 (492)
=.|..|+..+.... ++..|+.||..+
T Consensus 113 y~C~~C~~~~~~~rr~~~~~~y~C~~C~g~l 143 (146)
T smart00731 113 YRCTGCGQRYLRVRRSNNVSRYRCGKCGGKL 143 (146)
T ss_pred EECCCCCCCCceEccccCcceEEcCCCCCEE
Confidence 36877887664322 235566666654
No 298
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=23.78 E-value=24 Score=32.76 Aligned_cols=17 Identities=29% Similarity=0.882 Sum_probs=10.5
Q ss_pred CccccccCccccCccccc
Q 011140 428 VSKCTACGTDFSAFVRKH 445 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRH 445 (492)
.-.|.+|++.|..+ +||
T Consensus 72 ~i~clecGk~~k~L-krH 88 (132)
T PF05443_consen 72 YIICLECGKKFKTL-KRH 88 (132)
T ss_dssp -EE-TBT--EESBH-HHH
T ss_pred eeEEccCCcccchH-HHH
Confidence 45899999999999 444
No 299
>PRK04351 hypothetical protein; Provisional
Probab=23.60 E-value=40 Score=31.70 Aligned_cols=9 Identities=33% Similarity=1.401 Sum_probs=5.7
Q ss_pred cccccCccc
Q 011140 430 KCTACGTDF 438 (492)
Q Consensus 430 ~C~~C~~~F 438 (492)
.|..|+..+
T Consensus 114 ~C~~Cg~~~ 122 (149)
T PRK04351 114 ECQSCGQQY 122 (149)
T ss_pred ECCCCCCEe
Confidence 576676544
No 300
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=23.54 E-value=36 Score=32.09 Aligned_cols=43 Identities=12% Similarity=0.060 Sum_probs=27.6
Q ss_pred chhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCC
Q 011140 262 SSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (492)
Q Consensus 262 ~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Gad 308 (492)
+..|+++|+..|. +...+....+-|+...-+ .++..|.+.|+-
T Consensus 16 ~v~Vl~aL~~~~~-~tdEeLa~~Lgi~~~~VR---k~L~~L~e~~Lv 58 (158)
T TIGR00373 16 VGLVLFSLGIKGE-FTDEEISLELGIKLNEVR---KALYALYDAGLA 58 (158)
T ss_pred HHHHHHHHhccCC-CCHHHHHHHHCCCHHHHH---HHHHHHHHCCCc
Confidence 4778888888884 555666666555444332 446777777754
No 301
>PLN02189 cellulose synthase
Probab=23.51 E-value=35 Score=41.19 Aligned_cols=54 Identities=20% Similarity=0.459 Sum_probs=37.4
Q ss_pred CcCCccccccCccccCcc---ccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHH
Q 011140 425 DEAVSKCTACGTDFSAFV---RKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVI 485 (492)
Q Consensus 425 D~~v~~C~~C~~~Fs~~~---RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~ 485 (492)
.-....|.+|+-..++.. --.-|.-||.-+|..|.+++. ..-..+|-.|.....
T Consensus 31 ~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer-------~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 31 NLDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYER-------REGTQNCPQCKTRYK 87 (1040)
T ss_pred cccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhh-------hcCCccCcccCCchh
Confidence 334568999997766431 236799999999999998753 234467777765543
No 302
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=23.18 E-value=42 Score=26.05 Aligned_cols=25 Identities=28% Similarity=0.825 Sum_probs=17.5
Q ss_pred cccccCccccC-----cc---ccccccccCcee
Q 011140 430 KCTACGTDFSA-----FV---RKHHCRNCGDIF 454 (492)
Q Consensus 430 ~C~~C~~~Fs~-----~~---RRHHCR~CG~Vf 454 (492)
.|..|...... +. .-.+|-+||+|+
T Consensus 24 ~C~gC~~~l~~~~~~~i~~~~~i~~Cp~CgRiL 56 (56)
T PF02591_consen 24 TCSGCHMELPPQELNEIRKGDEIVFCPNCGRIL 56 (56)
T ss_pred ccCCCCEEcCHHHHHHHHcCCCeEECcCCCccC
Confidence 89999876553 22 357899998874
No 303
>PRK07591 threonine synthase; Validated
Probab=23.11 E-value=47 Score=35.84 Aligned_cols=25 Identities=28% Similarity=0.684 Sum_probs=20.2
Q ss_pred ccccccCccccCccccccccccCcee
Q 011140 429 SKCTACGTDFSAFVRKHHCRNCGDIF 454 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~RRHHCR~CG~Vf 454 (492)
-+|..|++.|..-.. .-|..||..+
T Consensus 19 l~C~~Cg~~~~~~~~-~~C~~cg~~l 43 (421)
T PRK07591 19 LKCRECGAEYPLGPI-HVCEECFGPL 43 (421)
T ss_pred EEeCCCCCcCCCCCC-ccCCCCCCeE
Confidence 489999999987655 8898898765
No 304
>PF04161 Arv1: Arv1-like family ; InterPro: IPR007290 Arv1 is a transmembrane protein, with potential zinc-binding motifs, that mediates sterol homeostasis. Its action is important in lipid homeostasis, which prevents free sterol toxicity []. Arv1 contains a homology domain (AHD), which consists of an N-terminal cysteine-rich subdomain with a putative zinc-binding motif, followed by a C-terminal subdomain of 33 amino acids. The C-terminal subdomain of the AHD is critical for the protein's function []. In yeast, Arv1p is important for the delivery of an early glycosylphosphatidylinositol GPI intermediate, GlcN-acylPI, to the first mannosyltransferase of GPI synthesis in the ER lumen []. It is important for the traffic of sterol in yeast and in humans. In eukaryotic cells, it may fuction in the sphingolipid metabolic pathway as a transporter of ceramides between the ER and Golgi [].
Probab=23.05 E-value=34 Score=33.49 Aligned_cols=33 Identities=30% Similarity=0.696 Sum_probs=23.7
Q ss_pred cccccCccccCc--------cccccccccCceeccCCCCCcE
Q 011140 430 KCTACGTDFSAF--------VRKHHCRNCGDIFCDKCTHGRI 463 (492)
Q Consensus 430 ~C~~C~~~Fs~~--------~RRHHCR~CG~VfC~kCS~~ri 463 (492)
.|-+|+..-..+ .|--+|.+||+ +|++..+...
T Consensus 2 iCIeCg~~v~~Ly~~Ys~~~irLt~C~~C~~-vaDkYiE~d~ 42 (208)
T PF04161_consen 2 ICIECGHPVKSLYRQYSPGNIRLTKCPNCGK-VADKYIEYDN 42 (208)
T ss_pred EeccCCCcchhhhhccCCCcEEEeeccccCC-cccceecccc
Confidence 588898764433 25578999997 5788887654
No 305
>PRK08197 threonine synthase; Validated
Probab=23.05 E-value=45 Score=35.45 Aligned_cols=24 Identities=29% Similarity=0.804 Sum_probs=18.9
Q ss_pred ccccccCccccCccccccccccCce
Q 011140 429 SKCTACGTDFSAFVRKHHCRNCGDI 453 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~RRHHCR~CG~V 453 (492)
-+|..|++.|..-.....| .||..
T Consensus 8 ~~C~~Cg~~~~~~~~~~~C-~cg~~ 31 (394)
T PRK08197 8 LECSKCGETYDADQVHNLC-KCGKP 31 (394)
T ss_pred EEECCCCCCCCCCCcceec-CCCCe
Confidence 3799999999877666778 78755
No 306
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=22.99 E-value=31 Score=38.15 Aligned_cols=54 Identities=22% Similarity=0.432 Sum_probs=35.6
Q ss_pred cccccC-ccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHH
Q 011140 430 KCTACG-TDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVG 483 (492)
Q Consensus 430 ~C~~C~-~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~ 483 (492)
.|..|. -.+..++|...|+.|+.-|=..|..-.+.-...+...-+=.|.+|-..
T Consensus 170 qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 170 QCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred eeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 488886 678888999999999998644444433322222334456678888653
No 307
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=22.83 E-value=41 Score=29.42 Aligned_cols=31 Identities=29% Similarity=0.689 Sum_probs=20.5
Q ss_pred CccccccCccccCccc----cccccccCceeccCCCC
Q 011140 428 VSKCTACGTDFSAFVR----KHHCRNCGDIFCDKCTH 460 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~R----RHHCR~CG~VfC~kCS~ 460 (492)
...|..|++ ..+.| --+|+.||..|-.-...
T Consensus 36 ~y~CpfCgk--~~vkR~a~GIW~C~~C~~~~AGGAy~ 70 (90)
T PRK03976 36 KHVCPVCGR--PKVKRVGTGIWECRKCGAKFAGGAYT 70 (90)
T ss_pred CccCCCCCC--CceEEEEEEEEEcCCCCCEEeCCccc
Confidence 457999964 22333 46899999998655433
No 308
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=22.78 E-value=39 Score=25.85 Aligned_cols=30 Identities=7% Similarity=0.085 Sum_probs=21.7
Q ss_pred cccccCccccCccccccccccCceeccCCCCCcE
Q 011140 430 KCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI 463 (492)
Q Consensus 430 ~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri 463 (492)
.|..|+..|.. --...||++||..|....+
T Consensus 3 ~Cpi~~~~~~~----Pv~~~~G~v~~~~~i~~~~ 32 (63)
T smart00504 3 LCPISLEVMKD----PVILPSGQTYERRAIEKWL 32 (63)
T ss_pred CCcCCCCcCCC----CEECCCCCEEeHHHHHHHH
Confidence 57788775543 3456899999999987654
No 309
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=22.70 E-value=43 Score=23.39 Aligned_cols=23 Identities=35% Similarity=1.047 Sum_probs=15.4
Q ss_pred ccccccCccccCccccccccccCceecc
Q 011140 429 SKCTACGTDFSAFVRKHHCRNCGDIFCD 456 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~RRHHCR~CG~VfC~ 456 (492)
..|..|+. ..|.-|..||..+|+
T Consensus 3 ~~C~vC~~-----~~kY~Cp~C~~~~CS 25 (30)
T PF04438_consen 3 KLCSVCGN-----PAKYRCPRCGARYCS 25 (30)
T ss_dssp EEETSSSS-----EESEE-TTT--EESS
T ss_pred CCCccCcC-----CCEEECCCcCCceeC
Confidence 46888876 347889999999986
No 310
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=22.69 E-value=35 Score=41.18 Aligned_cols=51 Identities=20% Similarity=0.492 Sum_probs=36.2
Q ss_pred CccccccCccccCcc---ccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHH
Q 011140 428 VSKCTACGTDFSAFV---RKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVI 485 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~---RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~ 485 (492)
...|.+|+-.-++.. --.-|..||.-+|..|.+++. ..-..+|..|.....
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~-------~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYER-------SEGNQCCPQCNTRYK 68 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhhhhh-------hcCCccCCccCCchh
Confidence 568999997655532 136799999999999998753 234467777765543
No 311
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.63 E-value=36 Score=36.57 Aligned_cols=31 Identities=29% Similarity=0.721 Sum_probs=22.3
Q ss_pred ccccccCccccCccc--cccccccCceeccCCCC
Q 011140 429 SKCTACGTDFSAFVR--KHHCRNCGDIFCDKCTH 460 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~R--RHHCR~CG~VfC~kCS~ 460 (492)
..|..|+...-+... .-+|| ||.-||..|-.
T Consensus 307 r~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~ 339 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGG 339 (384)
T ss_pred CcCcccceeeeecCCcceEEee-ccccchhhcCc
Confidence 468888754433332 55699 99999999974
No 312
>COG1773 Rubredoxin [Energy production and conversion]
Probab=22.62 E-value=39 Score=27.10 Aligned_cols=13 Identities=23% Similarity=1.009 Sum_probs=11.2
Q ss_pred cccccccccCcee
Q 011140 442 VRKHHCRNCGDIF 454 (492)
Q Consensus 442 ~RRHHCR~CG~Vf 454 (492)
++|+.|+.||.|+
T Consensus 1 m~~~~C~~CG~vY 13 (55)
T COG1773 1 MKRWRCSVCGYVY 13 (55)
T ss_pred CCceEecCCceEe
Confidence 3689999999997
No 313
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=22.55 E-value=60 Score=40.11 Aligned_cols=46 Identities=30% Similarity=0.860 Sum_probs=29.0
Q ss_pred ccccccCccccCccccccccccCce-----eccCCCCCcEecccCCCCCceecccchHHH
Q 011140 429 SKCTACGTDFSAFVRKHHCRNCGDI-----FCDKCTHGRIALTADANAQPVRVCDRCMVG 483 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~RRHHCR~CG~V-----fC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~ 483 (492)
..|..|+.. +. ...|..||.. +|..|-.. +...... ...|..|-..
T Consensus 668 rkCPkCG~~-t~---~~fCP~CGs~te~vy~CPsCGae---v~~des~--a~~CP~CGtp 718 (1337)
T PRK14714 668 RRCPSCGTE-TY---ENRCPDCGTHTEPVYVCPDCGAE---VPPDESG--RVECPRCDVE 718 (1337)
T ss_pred EECCCCCCc-cc---cccCcccCCcCCCceeCccCCCc---cCCCccc--cccCCCCCCc
Confidence 589999873 11 2389999966 48888763 2222222 4568888644
No 314
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=22.54 E-value=41 Score=29.54 Aligned_cols=31 Identities=29% Similarity=0.649 Sum_probs=20.8
Q ss_pred CccccccCccccCccc----cccccccCceeccCCCC
Q 011140 428 VSKCTACGTDFSAFVR----KHHCRNCGDIFCDKCTH 460 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~R----RHHCR~CG~VfC~kCS~ 460 (492)
...|..|++ ..+.| --+|++||..|-.-...
T Consensus 35 ~y~CpfCgk--~~vkR~a~GIW~C~~C~~~~AGGAy~ 69 (91)
T TIGR00280 35 KYVCPFCGK--KTVKRGSTGIWTCRKCGAKFAGGAYT 69 (91)
T ss_pred CccCCCCCC--CceEEEeeEEEEcCCCCCEEeCCccc
Confidence 458999974 22333 46899999998655433
No 315
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=22.53 E-value=5.8 Score=29.81 Aligned_cols=44 Identities=20% Similarity=0.610 Sum_probs=27.6
Q ss_pred ccccccCccccCccccccccccCce-eccCCCCCcEecccCCCCCceecccchHHHH
Q 011140 429 SKCTACGTDFSAFVRKHHCRNCGDI-FCDKCTHGRIALTADANAQPVRVCDRCMVGV 484 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~RRHHCR~CG~V-fC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L 484 (492)
..|.+|...+. ...-..||.+ ||..|...... ..+.|-.|...+
T Consensus 3 ~~C~iC~~~~~----~~~~~pCgH~~~C~~C~~~~~~--------~~~~CP~Cr~~i 47 (50)
T PF13920_consen 3 EECPICFENPR----DVVLLPCGHLCFCEECAERLLK--------RKKKCPICRQPI 47 (50)
T ss_dssp SB-TTTSSSBS----SEEEETTCEEEEEHHHHHHHHH--------TTSBBTTTTBB-
T ss_pred CCCccCCccCC----ceEEeCCCChHHHHHHhHHhcc--------cCCCCCcCChhh
Confidence 47888987644 3455679999 99999875432 345566665443
No 316
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=22.45 E-value=35 Score=32.91 Aligned_cols=26 Identities=23% Similarity=0.621 Sum_probs=19.4
Q ss_pred ccccccCccccCc---cccccccccCcee
Q 011140 429 SKCTACGTDFSAF---VRKHHCRNCGDIF 454 (492)
Q Consensus 429 ~~C~~C~~~Fs~~---~RRHHCR~CG~Vf 454 (492)
=.|..|+.+|++. .--.+|-.||..+
T Consensus 118 Y~Cp~C~~rytf~eA~~~~F~Cp~Cg~~L 146 (178)
T PRK06266 118 FFCPNCHIRFTFDEAMEYGFRCPQCGEML 146 (178)
T ss_pred EECCCCCcEEeHHHHhhcCCcCCCCCCCC
Confidence 3799999999985 3456777777754
No 317
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=22.38 E-value=35 Score=31.05 Aligned_cols=25 Identities=24% Similarity=0.715 Sum_probs=22.3
Q ss_pred cccccCccccCccccccccccCcee
Q 011140 430 KCTACGTDFSAFVRKHHCRNCGDIF 454 (492)
Q Consensus 430 ~C~~C~~~Fs~~~RRHHCR~CG~Vf 454 (492)
+|..|++....+.|..-|-+|+..+
T Consensus 71 ~CP~C~K~TKmLGr~D~CM~C~~pL 95 (114)
T PF11023_consen 71 ECPNCGKQTKMLGRVDACMHCKEPL 95 (114)
T ss_pred ECCCCCChHhhhchhhccCcCCCcC
Confidence 6999999999999999999998864
No 318
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=22.14 E-value=39 Score=25.92 Aligned_cols=30 Identities=33% Similarity=0.796 Sum_probs=21.9
Q ss_pred cccccCc-cccCccccccccccCce-eccCCCCC
Q 011140 430 KCTACGT-DFSAFVRKHHCRNCGDI-FCDKCTHG 461 (492)
Q Consensus 430 ~C~~C~~-~Fs~~~RRHHCR~CG~V-fC~kCS~~ 461 (492)
.|..|++ .+. ..|.+|-.|..+ +|..|-..
T Consensus 2 ~C~~C~~~~i~--g~R~~C~~C~dydLC~~Cf~~ 33 (49)
T cd02345 2 SCSACRKQDIS--GIRFPCQVCRDYSLCLGCYTK 33 (49)
T ss_pred cCCCCCCCCce--EeeEECCCCCCcCchHHHHhC
Confidence 5888887 444 567899999776 77777553
No 319
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=22.09 E-value=15 Score=27.08 Aligned_cols=29 Identities=28% Similarity=0.635 Sum_probs=17.7
Q ss_pred ccccCccccCccccccccccCceeccCCCCCcE
Q 011140 431 CTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI 463 (492)
Q Consensus 431 C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri 463 (492)
|.+|..-|.. -.=-.||.+||..|....+
T Consensus 1 CpiC~~~~~~----Pv~l~CGH~FC~~Cl~~~~ 29 (42)
T PF15227_consen 1 CPICLDLFKD----PVSLPCGHSFCRSCLERLW 29 (42)
T ss_dssp ETTTTSB-SS----EEE-SSSSEEEHHHHHHHH
T ss_pred CCccchhhCC----ccccCCcCHHHHHHHHHHH
Confidence 4556554432 2224799999999987654
No 320
>KOG2845 consensus Activating signal cointegrator 1 [Transcription]
Probab=22.03 E-value=48 Score=36.96 Aligned_cols=27 Identities=26% Similarity=0.829 Sum_probs=17.9
Q ss_pred CCccccccC-ccccCccccccccccCceeccC
Q 011140 427 AVSKCTACG-TDFSAFVRKHHCRNCGDIFCDK 457 (492)
Q Consensus 427 ~v~~C~~C~-~~Fs~~~RRHHCR~CG~VfC~k 457 (492)
..+.| .|+ ++=.++. +|-.||+|||..
T Consensus 156 grk~C-~CQg~kHpLi~---NCL~CGkIVCeQ 183 (505)
T KOG2845|consen 156 GRKPC-NCQGRKHPLIN---NCLGCGKIVCEQ 183 (505)
T ss_pred CCccc-cccCCcCchhh---cccccceeEEEe
Confidence 35678 564 3333333 799999999965
No 321
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=21.89 E-value=45 Score=31.08 Aligned_cols=24 Identities=33% Similarity=0.753 Sum_probs=14.9
Q ss_pred ccccccCccccCcc--ccccccccCc
Q 011140 429 SKCTACGTDFSAFV--RKHHCRNCGD 452 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~--RRHHCR~CG~ 452 (492)
+.|..|++.|.--. -..-|..||-
T Consensus 2 H~Ct~Cg~~f~dgs~eil~GCP~CGg 27 (131)
T PF09845_consen 2 HQCTKCGRVFEDGSKEILSGCPECGG 27 (131)
T ss_pred cccCcCCCCcCCCcHHHHccCcccCC
Confidence 36777877776433 2456777764
No 322
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=21.74 E-value=30 Score=40.85 Aligned_cols=33 Identities=30% Similarity=0.866 Sum_probs=0.0
Q ss_pred cccccccccCce----eccCCCCCcEecccCCCCCceecccchHHH
Q 011140 442 VRKHHCRNCGDI----FCDKCTHGRIALTADANAQPVRVCDRCMVG 483 (492)
Q Consensus 442 ~RRHHCR~CG~V----fC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~ 483 (492)
.-+..|..||.. .|..|.... .++++|..|-..
T Consensus 653 i~~r~Cp~Cg~~t~~~~Cp~CG~~T---------~~~~~Cp~C~~~ 689 (900)
T PF03833_consen 653 IGRRRCPKCGKETFYNRCPECGSHT---------EPVYVCPDCGIE 689 (900)
T ss_dssp ----------------------------------------------
T ss_pred eecccCcccCCcchhhcCcccCCcc---------ccceeccccccc
Confidence 345678888876 677776643 355556655544
No 323
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=21.54 E-value=32 Score=35.67 Aligned_cols=25 Identities=44% Similarity=1.127 Sum_probs=20.5
Q ss_pred cccccCccccCc------------cccccccccCcee
Q 011140 430 KCTACGTDFSAF------------VRKHHCRNCGDIF 454 (492)
Q Consensus 430 ~C~~C~~~Fs~~------------~RRHHCR~CG~Vf 454 (492)
.|..|++.|.-. .++|.|..||+-|
T Consensus 217 ~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsF 253 (279)
T KOG2462|consen 217 SCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSF 253 (279)
T ss_pred cCCcccchhcchHHHHHHHHhhcCCccccCcchhhHH
Confidence 699999999752 3688899999877
No 324
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=21.32 E-value=47 Score=30.94 Aligned_cols=20 Identities=35% Similarity=1.200 Sum_probs=15.3
Q ss_pred ccccccCcee----------ccCCCCCcEe
Q 011140 445 HHCRNCGDIF----------CDKCTHGRIA 464 (492)
Q Consensus 445 HHCR~CG~Vf----------C~kCS~~ri~ 464 (492)
|.|-+||++| |-.|..+++.
T Consensus 2 H~Ct~Cg~~f~dgs~eil~GCP~CGg~kF~ 31 (131)
T PF09845_consen 2 HQCTKCGRVFEDGSKEILSGCPECGGNKFQ 31 (131)
T ss_pred cccCcCCCCcCCCcHHHHccCcccCCcceE
Confidence 7889999887 6677776654
No 325
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=21.31 E-value=50 Score=26.17 Aligned_cols=24 Identities=29% Similarity=0.852 Sum_probs=15.4
Q ss_pred ccccCccccCccccccccccCceeccC
Q 011140 431 CTACGTDFSAFVRKHHCRNCGDIFCDK 457 (492)
Q Consensus 431 C~~C~~~Fs~~~RRHHCR~CG~VfC~k 457 (492)
|..|+.. -.+..-|-.||.|+|.+
T Consensus 1 C~~C~~~---~~~lw~CL~Cg~~~C~~ 24 (63)
T PF02148_consen 1 CSVCGST---NSNLWLCLTCGYVGCGR 24 (63)
T ss_dssp -SSSHTC---SSSEEEETTTS-EEETT
T ss_pred CCCCCCc---CCceEEeCCCCcccccC
Confidence 5556532 24566799999999986
No 326
>PF09947 DUF2180: Uncharacterized protein conserved in archaea (DUF2180); InterPro: IPR017211 This group represents a predicted zinc finger protein, AF1427 type.
Probab=21.21 E-value=33 Score=28.60 Aligned_cols=41 Identities=17% Similarity=0.378 Sum_probs=24.9
Q ss_pred ccccccCceeccCCCCCcEe-cc-------c--CCCCCceecccchHHHHH
Q 011140 445 HHCRNCGDIFCDKCTHGRIA-LT-------A--DANAQPVRVCDRCMVGVI 485 (492)
Q Consensus 445 HHCR~CG~VfC~kCS~~ri~-Lp-------~--~~s~kpvRVC~~Cy~~L~ 485 (492)
--|..||+-+|...+..... +- . .....+.-+|..|++.+.
T Consensus 17 avCivCG~GlC~~H~~~e~~~~~~g~yp~~~~~~~~~l~RilC~~C~~a~~ 67 (68)
T PF09947_consen 17 AVCIVCGAGLCMDHSKREEIPVWEGGYPFPSKKLKKPLPRILCPECHAALK 67 (68)
T ss_pred ehHHhcCchhhHHHHhhhheeeeccCCCCccccccCCCCeeecHHHHHHhh
Confidence 45888999999888764221 11 0 011123346999998764
No 327
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=21.10 E-value=46 Score=28.63 Aligned_cols=14 Identities=21% Similarity=0.560 Sum_probs=11.8
Q ss_pred ccccCceeccCCCC
Q 011140 447 CRNCGDIFCDKCTH 460 (492)
Q Consensus 447 CR~CG~VfC~kCS~ 460 (492)
|+.||+|+|-.+..
T Consensus 76 C~~Cg~i~~~~~~~ 89 (116)
T cd07153 76 CTKCGKVIDFEDCP 89 (116)
T ss_pred eCCCCCEEEecCcc
Confidence 99999999977653
No 328
>PRK08329 threonine synthase; Validated
Probab=21.06 E-value=54 Score=34.28 Aligned_cols=22 Identities=32% Similarity=1.044 Sum_probs=16.5
Q ss_pred cccccCccccCccccccccccCce
Q 011140 430 KCTACGTDFSAFVRKHHCRNCGDI 453 (492)
Q Consensus 430 ~C~~C~~~Fs~~~RRHHCR~CG~V 453 (492)
+|..|++.|..-.. ..| .||..
T Consensus 3 ~C~~Cg~~~~~~~~-~~C-~c~~~ 24 (347)
T PRK08329 3 RCTKCGRTYEEKFK-LRC-DCGGT 24 (347)
T ss_pred CcCCCCCCcCCCCc-eec-CCCCc
Confidence 69999999985433 789 68664
No 329
>PHA02929 N1R/p28-like protein; Provisional
Probab=21.05 E-value=32 Score=34.86 Aligned_cols=35 Identities=20% Similarity=0.390 Sum_probs=23.0
Q ss_pred CccccccCccccCcc---c-cccccccCceeccCCCCCc
Q 011140 428 VSKCTACGTDFSAFV---R-KHHCRNCGDIFCDKCTHGR 462 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~---R-RHHCR~CG~VfC~kCS~~r 462 (492)
..+|.+|...|..-. | .-.=-.||++||..|....
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~W 212 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIW 212 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCcccHHHHHHH
Confidence 468999988764211 0 0112368999999998754
No 330
>TIGR01384 TFS_arch transcription factor S, archaeal. There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.
Probab=20.51 E-value=57 Score=28.05 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=15.3
Q ss_pred cccccCccccCccccccccccCceec
Q 011140 430 KCTACGTDFSAFVRKHHCRNCGDIFC 455 (492)
Q Consensus 430 ~C~~C~~~Fs~~~RRHHCR~CG~VfC 455 (492)
.|..|+..+....-+..|+.||...-
T Consensus 2 fC~~Cg~~l~~~~~~~~C~~C~~~~~ 27 (104)
T TIGR01384 2 FCPKCGSLMTPKNGVYVCPSCGYEKE 27 (104)
T ss_pred CCcccCcccccCCCeEECcCCCCccc
Confidence 46677666654444566666666543
No 331
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=20.37 E-value=60 Score=23.59 Aligned_cols=24 Identities=25% Similarity=0.616 Sum_probs=15.1
Q ss_pred cccccCcccc-CccccccccccCce
Q 011140 430 KCTACGTDFS-AFVRKHHCRNCGDI 453 (492)
Q Consensus 430 ~C~~C~~~Fs-~~~RRHHCR~CG~V 453 (492)
.|..|+..|. .-..+.-|..||.+
T Consensus 10 ~C~~C~~~~~~~~dG~~yC~~cG~~ 34 (36)
T PF11781_consen 10 PCPVCGSRWFYSDDGFYYCDRCGHQ 34 (36)
T ss_pred cCCCCCCeEeEccCCEEEhhhCceE
Confidence 4888876533 33456667777764
No 332
>PLN02195 cellulose synthase A
Probab=20.36 E-value=53 Score=39.52 Aligned_cols=50 Identities=24% Similarity=0.560 Sum_probs=35.0
Q ss_pred CCccccccCccccCcc---ccccccccCceeccCCCCCcEecccCCCCCceecccchHHH
Q 011140 427 AVSKCTACGTDFSAFV---RKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVG 483 (492)
Q Consensus 427 ~v~~C~~C~~~Fs~~~---RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~ 483 (492)
.+..|.+|+-..++.. -=.-|.-||.-+|..|.+++. .+-..+|-.|...
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer-------~eg~q~CpqCkt~ 57 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEI-------KEGRKVCLRCGGP 57 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhhhhh-------hcCCccCCccCCc
Confidence 3568999987555431 125699999999999998753 2345678888543
No 333
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=20.31 E-value=72 Score=25.97 Aligned_cols=26 Identities=38% Similarity=0.981 Sum_probs=18.7
Q ss_pred CccccccCccccCccc--cccccccCce
Q 011140 428 VSKCTACGTDFSAFVR--KHHCRNCGDI 453 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~R--RHHCR~CG~V 453 (492)
..+|..|+....-..+ +..|-+||.+
T Consensus 7 ~~~CtSCg~~i~~~~~~~~F~CPnCG~~ 34 (59)
T PRK14890 7 PPKCTSCGIEIAPREKAVKFLCPNCGEV 34 (59)
T ss_pred CccccCCCCcccCCCccCEeeCCCCCCe
Confidence 3478888876654443 6789999887
No 334
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.21 E-value=46 Score=34.70 Aligned_cols=52 Identities=23% Similarity=0.490 Sum_probs=39.8
Q ss_pred CccccccCccccCcc------ccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHH
Q 011140 428 VSKCTACGTDFSAFV------RKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVI 485 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~------RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~ 485 (492)
-..|+.|+++|.... -+-|=-.|+++|=..|......+- ..-.|..|.+++.
T Consensus 224 d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivG------KkqtCPYCKekVd 281 (328)
T KOG1734|consen 224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVG------KKQTCPYCKEKVD 281 (328)
T ss_pred cchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeec------CCCCCchHHHHhh
Confidence 458999999988754 356667899999999988776553 3457999998764
Done!