Query 011140
Match_columns 492
No_of_seqs 240 out of 1214
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 21:38:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011140.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011140hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x4u_A Zinc finger, FYVE domai 99.8 2.7E-21 9.1E-26 160.8 5.1 71 419-489 5-81 (84)
2 1z2q_A LM5-1; membrane protein 99.8 2.9E-21 9.8E-26 160.8 5.1 71 417-487 10-80 (84)
3 2yw8_A RUN and FYVE domain-con 99.8 4.9E-21 1.7E-25 158.7 3.8 70 419-490 10-79 (82)
4 1vfy_A Phosphatidylinositol-3- 99.8 5.1E-20 1.7E-24 149.5 3.8 68 418-488 4-71 (73)
5 3t7l_A Zinc finger FYVE domain 99.8 9.6E-20 3.3E-24 153.6 5.2 69 417-487 9-77 (90)
6 3zyq_A Hepatocyte growth facto 99.8 2.6E-21 9E-26 187.0 -7.3 72 416-490 155-226 (226)
7 1joc_A EEA1, early endosomal a 99.8 2.7E-19 9.1E-24 159.3 4.3 65 419-485 60-124 (125)
8 1wfk_A Zinc finger, FYVE domai 99.7 3.2E-18 1.1E-22 143.9 4.6 62 426-488 7-68 (88)
9 1dvp_A HRS, hepatocyte growth 99.7 4E-18 1.4E-22 163.5 4.4 67 417-486 153-219 (220)
10 1y02_A CARP2, FYVE-ring finger 99.6 3.3E-17 1.1E-21 145.3 2.1 62 417-486 8-69 (120)
11 3mpx_A FYVE, rhogef and PH dom 99.6 7.7E-17 2.6E-21 165.9 0.0 69 418-487 365-433 (434)
12 1n0q_A 3ANK, 3 ankyrin repeats 99.3 6E-14 2.1E-18 112.7 -2.1 78 229-327 1-78 (93)
13 4gpm_A Engineered protein OR26 99.3 1.1E-13 3.6E-18 125.7 -1.8 66 261-327 81-146 (169)
14 3aaa_C Myotrophin, protein V-1 99.2 4.7E-13 1.6E-17 112.2 -1.8 62 262-324 52-113 (123)
15 4b93_B Ankyrin repeat domain-c 99.2 1.5E-12 5E-17 125.7 -0.2 66 258-324 160-225 (269)
16 1bi7_B P16INK4A, MTS1, multipl 99.2 2.3E-12 7.9E-17 112.5 -0.6 68 260-328 54-122 (156)
17 2l6b_A NR1C; ankyrin, consensu 99.2 1.6E-12 5.5E-17 107.5 -1.6 79 229-328 8-86 (115)
18 3c5r_A BARD-1, BRCA1-associate 99.2 2E-12 6.7E-17 110.1 -1.3 66 261-327 54-119 (137)
19 1d9s_A Cyclin-dependent kinase 99.1 3.3E-12 1.1E-16 109.1 -0.2 63 263-327 25-88 (136)
20 2zgd_A 3 repeat synthetic anky 99.1 1.4E-12 4.9E-17 108.5 -3.6 79 228-327 22-100 (110)
21 2jab_A H10-2-G3; HER2, darpin, 99.1 2.9E-12 1E-16 109.4 -2.1 83 224-327 8-90 (136)
22 4gpm_A Engineered protein OR26 99.1 3.8E-12 1.3E-16 115.4 -1.6 80 228-328 35-114 (169)
23 3t8k_A Uncharacterized protein 99.1 2.3E-12 7.9E-17 118.4 -3.2 81 229-326 37-124 (186)
24 1dcq_A PYK2-associated protein 99.1 3.6E-12 1.2E-16 123.9 -2.3 82 228-327 167-248 (278)
25 1d9s_A Cyclin-dependent kinase 99.1 8E-12 2.8E-16 106.7 -0.4 69 257-327 52-121 (136)
26 3deo_A Signal recognition part 99.1 6.9E-12 2.3E-16 112.5 -1.7 61 263-324 89-150 (183)
27 3ehr_A Osteoclast-stimulating 99.1 1E-11 3.6E-16 113.9 -0.8 78 229-327 72-150 (222)
28 2jab_A H10-2-G3; HER2, darpin, 99.1 3E-12 1E-16 109.3 -4.2 79 228-327 45-123 (136)
29 3c5r_A BARD-1, BRCA1-associate 99.1 5.5E-12 1.9E-16 107.3 -2.7 80 228-328 8-87 (137)
30 1s70_B 130 kDa myosin-binding 99.1 1.3E-11 4.4E-16 116.9 -0.5 77 228-325 197-273 (299)
31 3aaa_C Myotrophin, protein V-1 99.1 5.2E-12 1.8E-16 105.8 -2.9 68 260-328 17-84 (123)
32 3twr_A Tankyrase-2; ankyrin re 99.1 1.2E-11 4.2E-16 107.8 -0.7 81 227-328 39-119 (165)
33 1awc_B Protein (GA binding pro 99.0 1.2E-11 4.1E-16 107.1 -1.1 78 229-327 33-110 (153)
34 3f6q_A Integrin-linked protein 99.0 1.8E-11 6.3E-16 108.6 -0.5 80 228-328 37-116 (179)
35 1oy3_D Transcription factor in 99.0 2.3E-11 7.7E-16 113.4 0.0 80 227-327 155-235 (282)
36 2dzn_A Probable 26S proteasome 99.0 2.4E-11 8.1E-16 110.3 -0.5 78 229-327 106-184 (228)
37 4hbd_A KN motif and ankyrin re 99.0 1.6E-11 5.6E-16 117.9 -1.7 70 257-327 190-260 (276)
38 3lvq_E ARF-GAP with SH3 domain 99.0 1.9E-11 6.7E-16 127.6 -1.3 83 228-328 169-251 (497)
39 3ui2_A Signal recognition part 99.0 1.7E-11 5.8E-16 115.8 -1.6 61 263-324 90-151 (244)
40 1ycs_B 53BP2, P53BP2; ankyrin 99.0 1.8E-11 6.1E-16 114.5 -1.6 71 257-328 44-114 (239)
41 1ihb_A P18-INK4C(INK6), cyclin 99.0 1.6E-11 5.4E-16 106.3 -1.9 65 263-328 50-114 (162)
42 3f6q_A Integrin-linked protein 99.0 2E-11 6.9E-16 108.4 -1.3 68 260-328 15-83 (179)
43 3jxi_A Vanilloid receptor-rela 99.0 1.8E-11 6E-16 114.2 -1.7 77 229-326 92-185 (260)
44 3twr_A Tankyrase-2; ankyrin re 99.0 2.9E-11 9.9E-16 105.5 -0.3 64 263-327 21-85 (165)
45 3t8k_A Uncharacterized protein 99.0 1.2E-11 4E-16 113.7 -3.2 86 227-327 72-164 (186)
46 3v30_A DNA-binding protein rfx 99.0 2.5E-11 8.7E-16 106.5 -1.0 80 228-328 34-113 (172)
47 1oy3_D Transcription factor in 99.0 2E-11 7E-16 113.7 -1.8 63 264-327 139-202 (282)
48 2etb_A Transient receptor pote 99.0 2.4E-11 8.2E-16 113.3 -1.3 77 229-326 89-181 (256)
49 1ikn_D Protein (I-kappa-B-alph 99.0 3.1E-11 1E-15 111.3 -0.8 70 257-327 124-194 (236)
50 1k1a_A B-cell lymphoma 3-encod 99.0 3.3E-11 1.1E-15 110.0 -0.9 64 260-324 160-223 (241)
51 1ycs_B 53BP2, P53BP2; ankyrin 99.0 2.4E-11 8.2E-16 113.7 -1.8 65 259-324 79-144 (239)
52 1awc_B Protein (GA binding pro 99.0 2.6E-11 8.8E-16 105.0 -1.6 70 257-328 9-78 (153)
53 2rfm_A Putative ankyrin repeat 99.0 2.7E-11 9.1E-16 108.5 -1.8 80 228-328 66-145 (192)
54 1ihb_A P18-INK4C(INK6), cyclin 99.0 3.2E-11 1.1E-15 104.4 -1.4 66 261-328 16-81 (162)
55 3v30_A DNA-binding protein rfx 99.0 2.7E-11 9.3E-16 106.3 -1.9 67 261-328 13-80 (172)
56 2pnn_A Transient receptor pote 99.0 3.5E-11 1.2E-15 113.5 -1.3 77 229-326 100-193 (273)
57 3v31_A Ankyrin repeat family A 99.0 4.4E-11 1.5E-15 104.5 -1.1 79 228-327 1-79 (167)
58 2y1l_E Darpin-8.4; hydrolase-i 99.0 4.1E-11 1.4E-15 105.7 -1.4 79 229-328 46-124 (169)
59 4b93_B Ankyrin repeat domain-c 99.0 3.6E-11 1.2E-15 115.9 -1.9 100 228-328 84-196 (269)
60 2rfa_A Transient receptor pote 99.0 4.2E-11 1.4E-15 109.5 -1.5 71 257-328 82-165 (232)
61 1bd8_A P19INK4D CDK4/6 inhibit 99.0 3.5E-11 1.2E-15 103.7 -1.9 66 262-328 47-112 (156)
62 2vge_A RELA-associated inhibit 99.0 6E-11 2E-15 111.6 -0.6 64 263-327 34-97 (229)
63 3utm_A Tankyrase-1; tankyrase, 98.9 5E-11 1.7E-15 114.0 -1.4 83 227-327 208-290 (351)
64 3b7b_A Euchromatic histone-lys 98.9 5.8E-11 2E-15 108.6 -1.0 79 228-327 109-187 (237)
65 1bd8_A P19INK4D CDK4/6 inhibit 98.9 8.2E-11 2.8E-15 101.4 -0.1 65 261-327 13-78 (156)
66 1yyh_A HN1;, notch 1, ankyrin 98.9 4.5E-11 1.6E-15 112.0 -1.9 81 227-328 121-201 (253)
67 2y1l_E Darpin-8.4; hydrolase-i 98.9 5.1E-11 1.7E-15 105.1 -1.6 80 228-328 12-91 (169)
68 1bi7_B P16INK4A, MTS1, multipl 98.9 8E-11 2.7E-15 102.7 -0.4 79 228-328 10-89 (156)
69 2b0o_E UPLC1; arfgap, structur 98.9 3.9E-11 1.3E-15 118.0 -2.6 83 227-327 187-269 (301)
70 1n0r_A 4ANK, 4 ankyrin repeats 98.9 5.2E-11 1.8E-15 97.8 -1.6 61 263-324 48-108 (126)
71 2l6b_A NR1C; ankyrin, consensu 98.9 1.3E-10 4.3E-15 96.0 0.6 71 229-320 41-111 (115)
72 2rfm_A Putative ankyrin repeat 98.9 5E-11 1.7E-15 106.7 -2.0 80 228-328 33-112 (192)
73 3ehr_A Osteoclast-stimulating 98.9 4.1E-11 1.4E-15 109.9 -2.7 70 257-327 113-183 (222)
74 3v31_A Ankyrin repeat family A 98.9 5.5E-11 1.9E-15 103.9 -2.0 79 229-328 35-113 (167)
75 2xai_A ASB-9, ankyrin repeat a 98.9 6.5E-11 2.2E-15 111.7 -2.0 78 229-327 2-79 (261)
76 2etb_A Transient receptor pote 98.9 3.6E-11 1.2E-15 112.1 -4.2 77 230-327 136-231 (256)
77 3jue_A Arfgap with coiled-coil 98.9 1E-10 3.5E-15 119.5 -1.5 66 261-327 246-311 (368)
78 3aji_A 26S proteasome non-ATPa 98.9 1.1E-10 3.7E-15 106.4 -1.4 79 228-327 104-182 (231)
79 1n0r_A 4ANK, 4 ankyrin repeats 98.9 7.6E-11 2.6E-15 96.8 -2.2 79 229-328 1-79 (126)
80 3utm_A Tankyrase-1; tankyrase, 98.9 1.2E-10 4.2E-15 111.3 -1.2 80 228-328 56-135 (351)
81 1n11_A Ankyrin; clathrin, BAND 98.9 1.3E-10 4.4E-15 116.7 -1.2 79 228-327 276-354 (437)
82 2rfa_A Transient receptor pote 98.9 1.2E-10 4E-15 106.5 -1.5 79 229-327 120-207 (232)
83 2vge_A RELA-associated inhibit 98.9 5.1E-11 1.8E-15 112.0 -4.0 68 256-324 60-128 (229)
84 3ljn_A Hypothetical protein; a 98.9 1.1E-10 3.7E-15 114.6 -1.9 70 257-327 180-254 (364)
85 1yyh_A HN1;, notch 1, ankyrin 98.9 1.1E-10 3.8E-15 109.4 -1.8 80 228-328 88-168 (253)
86 3jxi_A Vanilloid receptor-rela 98.9 4.9E-11 1.7E-15 111.2 -4.3 79 228-327 138-235 (260)
87 2dzn_A Probable 26S proteasome 98.9 1.2E-10 4E-15 105.8 -1.7 80 228-328 70-151 (228)
88 2f8y_A Notch homolog 1, transl 98.9 1.3E-10 4.4E-15 105.4 -1.6 80 228-328 90-169 (223)
89 3deo_A Signal recognition part 98.9 7.1E-11 2.4E-15 105.9 -3.4 69 258-328 52-121 (183)
90 1s70_B 130 kDa myosin-binding 98.9 1.5E-10 5.1E-15 109.6 -1.4 67 260-327 83-149 (299)
91 1n0q_A 3ANK, 3 ankyrin repeats 98.9 2E-10 6.7E-15 92.1 -0.7 61 228-308 33-93 (93)
92 3ui2_A Signal recognition part 98.8 1.1E-10 3.9E-15 110.0 -2.9 70 257-328 52-122 (244)
93 3b7b_A Euchromatic histone-lys 98.8 1.2E-10 4.1E-15 106.6 -2.7 80 228-328 75-155 (237)
94 2xai_A ASB-9, ankyrin repeat a 98.8 1.9E-10 6.5E-15 108.5 -1.5 79 227-327 98-176 (261)
95 1sw6_A Regulatory protein SWI6 98.8 1.6E-10 5.6E-15 113.5 -2.1 51 275-326 275-325 (327)
96 3ljn_A Hypothetical protein; a 98.8 1.8E-10 6.3E-15 113.0 -2.2 83 228-328 136-222 (364)
97 3d9h_A CDNA FLJ77766, highly s 98.8 2.9E-10 9.9E-15 109.2 -0.9 83 225-328 54-136 (285)
98 2pnn_A Transient receptor pote 98.8 9.2E-11 3.2E-15 110.6 -4.5 78 229-327 147-243 (273)
99 3hra_A Ankyrin repeat family p 98.8 3.8E-10 1.3E-14 100.6 -0.4 78 228-326 70-149 (201)
100 2f8y_A Notch homolog 1, transl 98.8 2.7E-10 9.4E-15 103.2 -1.4 80 228-328 56-136 (223)
101 2fo1_E LIN-12 protein; beta-ba 98.8 3.1E-10 1E-14 113.4 -1.3 68 259-327 288-356 (373)
102 3d9h_A CDNA FLJ77766, highly s 98.8 4.4E-10 1.5E-14 108.0 -0.8 79 227-327 154-232 (285)
103 3kea_A K1L; tropism, ANK repea 98.8 3.7E-10 1.3E-14 108.7 -1.4 98 228-326 29-138 (285)
104 3kea_A K1L; tropism, ANK repea 98.8 2.7E-10 9.3E-15 109.6 -2.5 68 257-327 102-171 (285)
105 1k1a_A B-cell lymphoma 3-encod 98.8 4.3E-10 1.5E-14 102.6 -1.6 70 257-327 123-193 (241)
106 1n11_A Ankyrin; clathrin, BAND 98.8 4.8E-10 1.6E-14 112.5 -2.1 101 227-328 11-124 (437)
107 3aji_A 26S proteasome non-ATPa 98.8 5.4E-10 1.9E-14 101.8 -1.6 80 228-328 71-150 (231)
108 3hra_A Ankyrin repeat family p 98.8 5.8E-10 2E-14 99.5 -1.4 79 229-328 38-117 (201)
109 4hbd_A KN motif and ankyrin re 98.7 6E-10 2.1E-14 107.0 -1.9 69 259-328 159-227 (276)
110 1sw6_A Regulatory protein SWI6 98.7 9.8E-10 3.4E-14 108.0 -0.6 68 259-327 106-174 (327)
111 1wdy_A 2-5A-dependent ribonucl 98.7 7.2E-10 2.5E-14 102.5 -1.5 79 229-328 38-116 (285)
112 1ikn_D Protein (I-kappa-B-alph 98.7 9.1E-10 3.1E-14 101.4 -1.1 71 258-328 53-128 (236)
113 4g8k_A 2-5A-dependent ribonucl 98.7 8.1E-10 2.8E-14 107.3 -1.5 67 257-324 32-99 (337)
114 2fo1_E LIN-12 protein; beta-ba 98.7 9E-10 3.1E-14 110.0 -1.7 71 257-328 132-210 (373)
115 2b0o_E UPLC1; arfgap, structur 98.7 8.2E-10 2.8E-14 108.6 -2.5 72 228-326 224-295 (301)
116 1wdy_A 2-5A-dependent ribonucl 98.7 1.5E-09 5.2E-14 100.4 -1.3 62 263-325 199-261 (285)
117 4g8k_A 2-5A-dependent ribonucl 98.6 2.7E-09 9.3E-14 103.5 -1.9 66 262-328 218-284 (337)
118 3eu9_A Huntingtin-interacting 98.6 2.8E-09 9.5E-14 96.3 -1.9 79 228-327 107-187 (240)
119 3lvq_E ARF-GAP with SH3 domain 98.6 2.9E-09 9.9E-14 111.2 -2.5 71 257-328 139-218 (497)
120 3eu9_A Huntingtin-interacting 98.5 5.7E-09 1.9E-13 94.3 -1.9 85 237-328 3-87 (240)
121 1dcq_A PYK2-associated protein 98.5 1.2E-08 4E-13 99.1 -0.2 61 228-308 203-263 (278)
122 3jue_A Arfgap with coiled-coil 98.5 1.2E-08 4.1E-13 104.2 -0.3 71 257-328 206-279 (368)
123 2zgd_A 3 repeat synthetic anky 98.2 1.1E-07 3.8E-12 78.7 -1.5 54 229-302 56-109 (110)
124 2aja_A Ankyrin repeat family p 98.1 1.3E-08 4.4E-13 104.1 -9.8 70 257-328 135-210 (376)
125 2vrw_B P95VAV, VAV1, proto-onc 97.9 3.5E-06 1.2E-10 86.2 2.3 44 418-461 347-391 (406)
126 2aja_A Ankyrin repeat family p 97.9 1.3E-07 4.4E-12 96.7 -8.9 64 257-328 170-236 (376)
127 3ky9_A Proto-oncogene VAV; cal 96.0 0.0026 8.8E-08 68.4 2.6 43 419-461 520-563 (587)
128 1zbd_B Rabphilin-3A; G protein 95.3 0.0092 3.1E-07 53.6 3.3 53 427-483 54-107 (134)
129 2zet_C Melanophilin; complex, 95.0 0.0097 3.3E-07 54.6 2.4 49 428-483 68-117 (153)
130 1wfh_A Zinc finger (AN1-like) 91.2 0.13 4.5E-06 40.9 3.0 28 428-458 15-42 (64)
131 1wff_A Riken cDNA 2810002D23 p 90.7 0.14 4.8E-06 42.8 2.9 30 427-458 24-53 (85)
132 1wfl_A Zinc finger protein 216 90.2 0.28 9.5E-06 40.1 4.2 28 428-458 25-52 (74)
133 2csz_A Synaptotagmin-like prot 89.2 0.12 4E-06 42.4 1.2 48 428-483 25-73 (76)
134 1wfp_A Zinc finger (AN1-like) 88.9 0.35 1.2E-05 39.4 3.8 28 428-458 25-52 (74)
135 1wg2_A Zinc finger (AN1-like) 88.9 0.27 9.3E-06 39.1 3.1 28 428-458 15-42 (64)
136 2e72_A POGO transposable eleme 86.2 0.17 5.9E-06 38.1 0.5 34 420-454 5-40 (49)
137 1bor_A Transcription factor PM 84.0 0.29 1E-05 36.4 0.9 44 427-485 5-48 (56)
138 1x4w_A Hypothetical protein FL 83.8 0.42 1.4E-05 38.3 1.7 31 427-458 14-45 (67)
139 2a20_A Regulating synaptic mem 82.9 1.1 3.8E-05 35.1 3.7 51 428-483 9-60 (62)
140 2ecm_A Ring finger and CHY zin 80.9 0.86 2.9E-05 32.8 2.4 36 428-463 5-40 (55)
141 1z60_A TFIIH basal transcripti 80.6 0.26 8.9E-06 38.5 -0.6 43 429-480 16-58 (59)
142 2d8t_A Dactylidin, ring finger 79.9 0.15 5E-06 39.4 -2.2 47 428-486 15-61 (71)
143 1twf_L ABC10-alpha, DNA-direct 77.6 0.93 3.2E-05 36.4 1.8 29 428-456 28-58 (70)
144 2ysl_A Tripartite motif-contai 77.2 0.53 1.8E-05 36.0 0.2 48 428-484 20-67 (73)
145 1iym_A EL5; ring-H2 finger, ub 77.2 1.3 4.6E-05 31.8 2.4 47 428-482 5-51 (55)
146 2ea6_A Ring finger protein 4; 77.0 0.085 2.9E-06 39.8 -4.3 50 428-485 15-67 (69)
147 3lrq_A E3 ubiquitin-protein li 76.2 0.37 1.3E-05 39.9 -1.0 31 430-463 24-54 (100)
148 2ect_A Ring finger protein 126 74.3 1.5 5E-05 34.1 2.1 49 428-485 15-63 (78)
149 2ct2_A Tripartite motif protei 74.2 1.3 4.5E-05 34.8 1.9 52 428-484 15-66 (88)
150 2ecn_A Ring finger protein 141 73.8 0.46 1.6E-05 36.2 -0.9 46 428-486 15-60 (70)
151 2egp_A Tripartite motif-contai 73.4 1.1 3.7E-05 34.7 1.1 52 428-484 12-63 (79)
152 2ecl_A Ring-box protein 2; RNF 73.3 1.1 3.8E-05 35.7 1.2 58 419-484 6-74 (81)
153 2ecy_A TNF receptor-associated 72.7 0.2 6.8E-06 38.0 -3.2 47 428-485 15-61 (66)
154 1v87_A Deltex protein 2; ring- 72.0 0.66 2.2E-05 38.7 -0.5 55 429-486 26-94 (114)
155 3l11_A E3 ubiquitin-protein li 71.8 1.2 4.2E-05 37.2 1.2 46 429-485 16-61 (115)
156 3fl2_A E3 ubiquitin-protein li 69.2 0.68 2.3E-05 39.5 -1.0 45 429-484 53-97 (124)
157 2l0b_A E3 ubiquitin-protein li 68.7 0.28 9.7E-06 39.9 -3.4 48 428-484 40-87 (91)
158 2ysj_A Tripartite motif-contai 68.5 2 6.8E-05 32.0 1.6 32 428-463 20-51 (63)
159 2jrp_A Putative cytoplasmic pr 68.5 1.3 4.4E-05 36.7 0.6 55 430-486 4-63 (81)
160 2ckl_B Ubiquitin ligase protei 68.3 0.78 2.7E-05 41.0 -0.9 46 429-484 55-100 (165)
161 2ecv_A Tripartite motif-contai 67.9 2.4 8.3E-05 32.7 2.1 52 428-485 19-70 (85)
162 1jm7_B BARD1, BRCA1-associated 66.1 2 6.8E-05 36.3 1.3 30 429-462 23-53 (117)
163 4gzn_C ZFP-57, zinc finger pro 64.6 2.8 9.7E-05 31.6 1.8 26 430-455 6-43 (60)
164 2ep4_A Ring finger protein 24; 63.5 2.7 9.4E-05 32.1 1.6 48 428-484 15-62 (74)
165 1wd2_A Ariadne-1 protein homol 63.4 5.1 0.00017 30.9 3.0 34 428-461 6-43 (60)
166 3ng2_A RNF4, snurf, ring finge 61.3 1.9 6.5E-05 32.5 0.2 49 428-484 10-61 (71)
167 1x4j_A Ring finger protein 38; 61.1 3.1 0.00011 32.0 1.5 49 427-484 22-70 (75)
168 2ct7_A Ring finger protein 31; 60.3 4.4 0.00015 32.9 2.3 31 430-460 27-59 (86)
169 2lce_A B-cell lymphoma 6 prote 59.6 6.4 0.00022 29.3 3.0 13 428-440 17-29 (74)
170 2lv2_A Insulinoma-associated p 59.2 4.6 0.00016 32.6 2.3 27 428-454 28-66 (85)
171 2ecj_A Tripartite motif-contai 58.7 3.8 0.00013 29.5 1.5 31 428-462 15-45 (58)
172 1vq8_1 50S ribosomal protein L 58.1 3.6 0.00012 32.0 1.3 7 447-453 20-26 (57)
173 2djb_A Polycomb group ring fin 57.7 3.3 0.00011 31.7 1.1 47 428-485 15-61 (72)
174 2ecw_A Tripartite motif-contai 57.4 1.9 6.4E-05 33.4 -0.4 52 428-485 19-70 (85)
175 2yur_A Retinoblastoma-binding 57.2 4.9 0.00017 31.0 2.0 47 428-483 15-61 (74)
176 3uk3_C Zinc finger protein 217 57.1 5.8 0.0002 27.7 2.3 12 429-440 5-16 (57)
177 1chc_A Equine herpes virus-1 r 55.8 5.2 0.00018 29.9 1.9 46 428-484 5-50 (68)
178 1x4v_A Hypothetical protein LO 55.7 5.4 0.00019 31.4 2.0 26 429-457 13-40 (63)
179 2kiz_A E3 ubiquitin-protein li 55.7 5.1 0.00017 30.1 1.8 49 428-485 14-62 (69)
180 1jm7_A BRCA1, breast cancer ty 55.1 3.8 0.00013 33.6 1.1 45 430-483 23-67 (112)
181 4a0k_B E3 ubiquitin-protein li 55.1 2.7 9.4E-05 36.5 0.2 57 420-484 40-110 (117)
182 2csy_A Zinc finger protein 183 54.0 4.7 0.00016 31.5 1.4 32 428-463 15-46 (81)
183 1bbo_A Human enhancer-binding 53.4 7.3 0.00025 27.1 2.3 11 430-440 3-13 (57)
184 2adr_A ADR1; transcription reg 51.5 7.7 0.00026 27.4 2.1 11 430-440 4-14 (60)
185 3j20_Y 30S ribosomal protein S 51.0 6.1 0.00021 29.6 1.5 27 428-454 19-47 (50)
186 2xeu_A Ring finger protein 4; 51.0 3.5 0.00012 30.2 0.2 50 428-485 3-55 (64)
187 2gqj_A Zinc finger protein KIA 50.7 3.4 0.00012 33.0 0.1 27 429-455 25-65 (98)
188 1x5w_A Zinc finger protein 64, 50.6 7 0.00024 28.7 1.9 12 429-440 10-21 (70)
189 1vd4_A Transcription initiatio 50.4 3.7 0.00013 30.2 0.2 28 429-456 15-51 (62)
190 4ayc_A E3 ubiquitin-protein li 50.0 3.2 0.00011 36.1 -0.2 29 430-462 55-83 (138)
191 2jmo_A Parkin; IBR, E3 ligase, 49.6 15 0.0005 29.5 3.7 33 428-460 25-66 (80)
192 2eps_A POZ-, at HOOK-, and zin 49.4 7.1 0.00024 27.5 1.7 12 429-440 13-24 (54)
193 2d9h_A Zinc finger protein 692 49.2 6.4 0.00022 29.5 1.5 12 429-440 8-19 (78)
194 1x6e_A Zinc finger protein 24; 49.0 7.6 0.00026 28.8 1.8 12 429-440 15-26 (72)
195 1g25_A CDK-activating kinase a 48.9 4 0.00014 30.5 0.3 49 429-484 4-53 (65)
196 2y43_A E3 ubiquitin-protein li 48.8 5.2 0.00018 32.4 1.0 32 429-463 23-54 (99)
197 2fiy_A Protein FDHE homolog; F 48.0 9.1 0.00031 38.5 2.8 56 428-483 182-262 (309)
198 2lcq_A Putative toxin VAPC6; P 47.6 6.3 0.00022 35.3 1.4 32 417-453 126-157 (165)
199 1wys_A Riken cDNA 2310008M20 p 47.6 9.3 0.00032 31.0 2.2 27 428-457 14-42 (75)
200 2y1n_A E3 ubiquitin-protein li 47.6 3.1 0.00011 43.3 -0.8 45 429-484 333-377 (389)
201 1t1h_A Gspef-atpub14, armadill 47.5 5.4 0.00018 30.7 0.8 32 428-463 8-39 (78)
202 3j21_g 50S ribosomal protein L 45.8 6.6 0.00023 29.7 1.0 24 428-453 14-37 (51)
203 2ckl_A Polycomb group ring fin 45.5 6 0.00021 32.6 0.8 31 429-462 16-46 (108)
204 2ct1_A Transcriptional repress 43.1 10 0.00036 28.3 1.8 12 429-440 16-27 (77)
205 2ctd_A Zinc finger protein 512 43.1 7.3 0.00025 31.5 1.0 12 429-440 35-47 (96)
206 4ic3_A E3 ubiquitin-protein li 42.5 1.9 6.4E-05 33.7 -2.6 41 430-486 26-67 (74)
207 1z6u_A NP95-like ring finger p 41.3 7.2 0.00025 34.7 0.7 45 429-484 79-123 (150)
208 3t6p_A Baculoviral IAP repeat- 41.2 11 0.00036 38.4 2.0 43 428-486 295-338 (345)
209 2cot_A Zinc finger protein 435 41.2 19 0.00066 26.7 3.1 13 428-440 18-30 (77)
210 3jyw_9 60S ribosomal protein L 41.1 11 0.00037 30.5 1.7 27 428-456 26-56 (72)
211 3j21_i 50S ribosomal protein L 41.1 9.4 0.00032 31.7 1.3 27 429-457 36-66 (83)
212 2drp_A Protein (tramtrack DNA- 40.9 7.4 0.00025 28.1 0.6 12 429-440 11-22 (66)
213 4ap4_A E3 ubiquitin ligase RNF 39.4 6.5 0.00022 32.8 0.1 51 427-485 71-124 (133)
214 2ecg_A Baculoviral IAP repeat- 39.1 2.2 7.4E-05 33.3 -2.7 41 430-486 27-68 (75)
215 3iz5_m 60S ribosomal protein L 38.9 12 0.00041 31.6 1.6 27 429-457 37-67 (92)
216 3cc2_Z 50S ribosomal protein L 38.3 8.8 0.0003 33.7 0.7 31 428-458 60-92 (116)
217 3ztg_A E3 ubiquitin-protein li 38.2 9.1 0.00031 30.4 0.8 33 428-463 13-45 (92)
218 1vq8_Z 50S ribosomal protein L 37.8 9.1 0.00031 31.5 0.8 31 429-459 28-60 (83)
219 1e4u_A Transcriptional repress 37.0 14 0.00046 29.5 1.6 50 427-484 10-60 (78)
220 2epr_A POZ-, at HOOK-, and zin 36.9 12 0.00042 25.4 1.2 13 429-441 13-25 (48)
221 2jne_A Hypothetical protein YF 36.2 8.3 0.00029 33.0 0.3 55 430-486 34-93 (101)
222 2kwq_A Protein MCM10 homolog; 35.5 11 0.00038 31.8 0.9 23 430-453 50-74 (92)
223 3izc_m 60S ribosomal protein R 35.3 15 0.0005 31.1 1.6 27 429-457 37-67 (92)
224 1tot_A CREB-binding protein; z 35.2 9 0.00031 28.7 0.3 29 429-460 7-36 (52)
225 3hct_A TNF receptor-associated 34.8 11 0.00037 31.7 0.8 30 429-462 19-48 (118)
226 3dpl_R Ring-box protein 1; ubi 34.7 13 0.00046 31.3 1.3 56 420-483 29-98 (106)
227 2dmd_A Zinc finger protein 64, 34.2 20 0.00067 27.5 2.2 11 430-440 10-20 (96)
228 1weo_A Cellulose synthase, cat 34.1 7.1 0.00024 33.0 -0.5 52 426-484 14-68 (93)
229 2ctu_A Zinc finger protein 483 33.7 6.7 0.00023 28.5 -0.6 29 429-457 19-52 (73)
230 1x6h_A Transcriptional repress 33.6 18 0.00063 27.0 1.8 12 429-440 16-27 (86)
231 2fc7_A ZZZ3 protein; structure 33.0 16 0.00055 29.8 1.5 31 430-461 23-57 (82)
232 2kmk_A Zinc finger protein GFI 32.7 19 0.00066 26.5 1.8 12 429-440 30-41 (82)
233 2c2l_A CHIP, carboxy terminus 32.4 16 0.00054 34.3 1.5 32 428-463 208-239 (281)
234 3h0g_L DNA-directed RNA polyme 32.4 20 0.00069 28.2 1.9 25 428-452 21-46 (63)
235 2ee8_A Protein ODD-skipped-rel 32.3 20 0.00068 28.1 1.9 11 430-440 47-57 (106)
236 1pft_A TFIIB, PFTFIIBN; N-term 32.2 18 0.00063 26.2 1.5 27 428-454 5-34 (50)
237 2ayj_A 50S ribosomal protein L 32.1 14 0.00048 28.6 0.9 23 428-452 19-41 (56)
238 4a18_A RPL37, ribosomal protei 31.8 17 0.00057 30.8 1.4 8 444-451 31-38 (94)
239 4ayb_P DNA-directed RNA polyme 31.1 23 0.00077 26.6 1.8 25 429-453 4-32 (48)
240 1a1h_A QGSR zinc finger peptid 31.1 21 0.0007 27.0 1.8 12 429-440 35-46 (90)
241 1llm_C Chimera of ZIF23-GCN4; 30.9 21 0.00071 27.3 1.8 11 430-440 5-15 (88)
242 2lt7_A Transcriptional regulat 30.5 19 0.00065 30.8 1.6 11 430-440 52-62 (133)
243 3knv_A TNF receptor-associated 30.3 14 0.00048 32.5 0.8 45 428-483 31-75 (141)
244 1rmd_A RAG1; V(D)J recombinati 30.3 14 0.00048 30.7 0.7 30 429-462 24-53 (116)
245 2epq_A POZ-, at HOOK-, and zin 30.2 19 0.00065 23.9 1.3 12 429-440 11-22 (45)
246 3v2d_5 50S ribosomal protein L 29.9 17 0.00059 28.2 1.1 20 428-451 30-50 (60)
247 4a17_Y RPL37A, 60S ribosomal p 29.7 14 0.00048 31.8 0.6 29 428-458 36-68 (103)
248 1wim_A KIAA0161 protein; ring 29.3 17 0.00059 29.1 1.1 36 428-464 5-40 (94)
249 3c5k_A HD6, histone deacetylas 29.2 20 0.0007 30.7 1.6 26 428-457 24-49 (109)
250 1wfe_A Riken cDNA 2310008M20 p 29.1 23 0.00079 29.3 1.8 27 428-457 25-53 (86)
251 1ffk_W Ribosomal protein L37AE 28.9 21 0.0007 28.9 1.4 28 428-457 27-58 (73)
252 2rpc_A Zinc finger protein ZIC 28.8 23 0.00078 29.8 1.8 11 430-440 64-74 (155)
253 4ap4_A E3 ubiquitin ligase RNF 28.7 12 0.0004 31.2 -0.1 34 428-461 7-43 (133)
254 2k4x_A 30S ribosomal protein S 28.6 26 0.00088 26.6 1.9 26 428-453 18-45 (55)
255 2csh_A Zinc finger protein 297 27.6 26 0.00088 27.7 1.8 11 430-440 39-49 (110)
256 2d8v_A Zinc finger FYVE domain 27.5 28 0.00097 27.8 1.9 27 429-460 9-36 (67)
257 1dl6_A Transcription factor II 27.4 32 0.0011 26.1 2.2 27 428-454 11-40 (58)
258 2gmg_A Hypothetical protein PF 27.1 20 0.00068 31.0 1.1 23 430-452 69-92 (105)
259 3iz5_l 60S ribosomal protein L 27.0 16 0.00054 30.9 0.5 9 444-452 31-39 (94)
260 2kdx_A HYPA, hydrogenase/ureas 27.0 23 0.00078 30.3 1.5 24 429-452 74-98 (119)
261 2yt9_A Zinc finger-containing 26.7 33 0.0011 26.1 2.3 11 430-440 9-19 (95)
262 3vk6_A E3 ubiquitin-protein li 26.5 3.3 0.00011 35.6 -3.8 29 429-460 2-30 (101)
263 1f2i_G Fusion of N-terminal 17 26.4 29 0.00099 25.3 1.8 26 429-454 20-59 (73)
264 2wbt_A B-129; zinc finger; 2.7 26.3 20 0.00069 29.3 1.0 12 429-440 75-86 (129)
265 2lk0_A RNA-binding protein 5; 25.8 22 0.00077 24.0 1.0 21 430-452 7-27 (32)
266 2dmi_A Teashirt homolog 3; zin 25.6 31 0.0011 27.5 2.0 9 430-438 52-60 (115)
267 2ghf_A ZHX1, zinc fingers and 25.4 20 0.0007 29.7 0.9 12 429-440 19-30 (102)
268 3htk_C E3 SUMO-protein ligase 25.4 7.9 0.00027 38.4 -2.0 33 428-463 181-213 (267)
269 3k1f_M Transcription initiatio 25.3 28 0.00097 32.9 1.9 37 419-455 11-53 (197)
270 3k7a_M Transcription initiatio 25.0 32 0.0011 34.5 2.4 33 422-454 14-52 (345)
271 2dlq_A GLI-kruppel family memb 24.7 42 0.0014 26.6 2.7 12 429-440 36-47 (124)
272 2dlk_A Novel protein; ZF-C2H2 24.6 29 0.00098 25.6 1.5 12 429-440 39-52 (79)
273 4hc9_A Trans-acting T-cell-spe 24.4 32 0.0011 29.7 1.9 66 418-484 15-90 (115)
274 1wjp_A Zinc finger protein 295 24.1 31 0.001 27.3 1.7 10 430-439 44-53 (107)
275 2gmg_A Hypothetical protein PF 23.7 33 0.0011 29.6 1.9 15 440-454 63-77 (105)
276 2k1p_A Zinc finger RAN-binding 23.4 39 0.0013 22.9 1.8 21 430-452 8-28 (33)
277 1qxf_A GR2, 30S ribosomal prot 22.8 35 0.0012 27.2 1.7 28 430-457 9-39 (66)
278 3na7_A HP0958; flagellar bioge 22.5 32 0.0011 33.0 1.7 28 429-456 199-234 (256)
279 3f6q_B LIM and senescent cell 22.2 31 0.0011 25.6 1.3 53 428-484 11-70 (72)
280 1e7l_A GP49, recombination end 22.1 32 0.0011 31.6 1.5 21 428-448 20-43 (157)
281 2jsp_A Transcriptional regulat 21.7 20 0.0007 29.9 0.1 15 428-442 21-35 (87)
282 2ej4_A Zinc finger protein ZIC 21.4 40 0.0014 25.8 1.8 21 420-440 16-37 (95)
283 1wil_A KIAA1045 protein; ring 21.3 61 0.0021 27.1 2.9 31 430-462 17-47 (89)
284 2m0e_A Zinc finger and BTB dom 21.0 32 0.0011 19.6 0.9 10 445-454 3-12 (29)
285 2vje_A E3 ubiquitin-protein li 20.7 22 0.00074 26.9 0.1 48 427-484 7-55 (64)
286 3j20_W 30S ribosomal protein S 20.7 42 0.0014 26.5 1.7 28 430-457 17-47 (63)
287 2ct0_A Non-SMC element 1 homol 20.6 27 0.00094 27.8 0.7 48 428-484 15-62 (74)
288 1x61_A Thyroid receptor intera 20.4 50 0.0017 24.7 2.1 15 473-487 53-67 (72)
289 3vth_A Hydrogenase maturation 20.2 13 0.00046 41.6 -1.7 25 428-452 111-141 (761)
No 1
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=2.7e-21 Score=160.84 Aligned_cols=71 Identities=24% Similarity=0.591 Sum_probs=64.1
Q ss_pred CCCcccCcCCccccccCccccCccccccccccCceeccCCCCCcEecccCCC------CCceecccchHHHHHHhhh
Q 011140 419 KDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADAN------AQPVRVCDRCMVGVIDWLI 489 (492)
Q Consensus 419 ~p~WvpD~~v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s------~kpvRVC~~Cy~~L~~r~~ 489 (492)
...|++|+++..|+.|+++|+++.||||||+||+|||.+|+.++++|+..+. .+++|||+.||+.|.+..+
T Consensus 5 ~~~W~pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~l~~~g~~~p~~~~~~~RVC~~C~~~l~~~~~ 81 (84)
T 1x4u_A 5 SSGRYPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASCNQTLSKSGP 81 (84)
T ss_dssp CCCSCSCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEEECSTTTSCCCSSCSSCCEEECHHHHHHHHSCCS
T ss_pred CCccccCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCceecccccccCccccCCccEECHHHHHHHhccCC
Confidence 5789999999999999999999999999999999999999999999887543 3689999999999976544
No 2
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=99.83 E-value=2.9e-21 Score=160.78 Aligned_cols=71 Identities=38% Similarity=0.904 Sum_probs=65.5
Q ss_pred CCCCCcccCcCCccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHHHh
Q 011140 417 EEKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVIDW 487 (492)
Q Consensus 417 e~~p~WvpD~~v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~~r 487 (492)
+.++.|++|+++..|+.|++.|+++.||||||+||+|||.+|+.+++.|+..+..+++|||+.||+.|.+.
T Consensus 10 ~~~~~W~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~~~ 80 (84)
T 1z2q_A 10 QSKGYWQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALRSS 80 (84)
T ss_dssp CCCSCCCCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHHTS
T ss_pred CCCCccccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHhhc
Confidence 34789999999999999999999999999999999999999999999999876678999999999998653
No 3
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=99.81 E-value=4.9e-21 Score=158.71 Aligned_cols=70 Identities=41% Similarity=0.959 Sum_probs=58.3
Q ss_pred CCCcccCcCCccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHHHhhhh
Q 011140 419 KDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVIDWLIS 490 (492)
Q Consensus 419 ~p~WvpD~~v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~~r~~~ 490 (492)
.+.|++|+++..|+.|++.|+++.||||||+||+|||.+|+.++++|+.. .+++|||+.||+.|.++++.
T Consensus 10 ~~~W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~--~~~~RVC~~C~~~l~~~~~~ 79 (82)
T 2yw8_A 10 GHAWLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSY--PKPVRVCDSCHTLLLQRCSS 79 (82)
T ss_dssp -----CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTC--SSCEEECHHHHHHTTC----
T ss_pred CCccccCccCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCC--CCcCEECHHHHHHHHHhccc
Confidence 57899999999999999999999999999999999999999999998864 68999999999999887764
No 4
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=99.78 E-value=5.1e-20 Score=149.50 Aligned_cols=68 Identities=35% Similarity=0.822 Sum_probs=59.4
Q ss_pred CCCCcccCcCCccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHHHhh
Q 011140 418 EKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVIDWL 488 (492)
Q Consensus 418 ~~p~WvpD~~v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~~r~ 488 (492)
..+.|+++. .|+.|+++|+++.||||||+||+|||++|+.+++.|+..+..+++|||+.||+.|..-+
T Consensus 4 ~~p~W~~~~---~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~~i~ 71 (73)
T 1vfy_A 4 TPADWIDSD---ACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSCFEDYEFIV 71 (73)
T ss_dssp ---CCCCCS---BCTTTCCBCBTTBCCEECTTTCCEECGGGSCEEEEEGGGTEEEEEEECHHHHHHHHHHH
T ss_pred CCCcCccCC---cccCCCCccCCccccccCCCCCEEEcccccCCeEEcccCCCCCCCEECHHHHHHHHHHh
Confidence 468999974 89999999999999999999999999999999999998766689999999999886543
No 5
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=99.78 E-value=9.6e-20 Score=153.57 Aligned_cols=69 Identities=32% Similarity=0.797 Sum_probs=63.2
Q ss_pred CCCCCcccCcCCccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHHHh
Q 011140 417 EEKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVIDW 487 (492)
Q Consensus 417 e~~p~WvpD~~v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~~r 487 (492)
+..+.|++|.++..|+.|++.|+++.||||||+||+|||..|+.+++.|+.. .+++|||+.||+.|.+.
T Consensus 9 ~~~p~W~~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~--~~~~RVC~~C~~~l~~~ 77 (90)
T 3t7l_A 9 QKQPTWVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYL--EKEARVCVVCYETISKA 77 (90)
T ss_dssp TSCCCCCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTT--TEEEEECHHHHHHHHHH
T ss_pred CCCCcCcccccCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCC--CCCCeECHHHHHHHHHH
Confidence 3478999999999999999999999999999999999999999999998764 47999999999998664
No 6
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=99.77 E-value=2.6e-21 Score=187.03 Aligned_cols=72 Identities=35% Similarity=0.770 Sum_probs=62.5
Q ss_pred CCCCCCcccCcCCccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHHHhhhh
Q 011140 416 NEEKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVIDWLIS 490 (492)
Q Consensus 416 ~e~~p~WvpD~~v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~~r~~~ 490 (492)
.+..+.|+++. .|+.|++.|++++||||||+||+|||..|+.+++.++..+..+++|||+.||+.|+++.++
T Consensus 155 ~~~~p~W~~~~---~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~~~~eg 226 (226)
T 3zyq_A 155 AERAPDWVDAE---ECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLNRKAEG 226 (226)
T ss_dssp CCCCCCCCCCS---BCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHCC----
T ss_pred cccccccccCC---CCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhhhhccC
Confidence 34579999864 8999999999999999999999999999999999999876678999999999999887663
No 7
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=99.75 E-value=2.7e-19 Score=159.28 Aligned_cols=65 Identities=43% Similarity=1.045 Sum_probs=60.5
Q ss_pred CCCcccCcCCccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHH
Q 011140 419 KDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVI 485 (492)
Q Consensus 419 ~p~WvpD~~v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~ 485 (492)
.+.|++|.++..|+.|++.|+++.||||||+||+|||..|+.+++.++. ..+++|||+.||..|+
T Consensus 60 ~~~W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~~~p~--~~~p~RVC~~C~~~l~ 124 (125)
T 1joc_A 60 NRKWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPS--SKKPVRVCDACFNDLQ 124 (125)
T ss_dssp HCCCCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEECCTT--CSSCEEECHHHHHHTT
T ss_pred CCccccCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCccccCC--CCCCCEeCHHHHHHhc
Confidence 5789999999999999999999999999999999999999999988875 4689999999999874
No 8
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=99.71 E-value=3.2e-18 Score=143.94 Aligned_cols=62 Identities=24% Similarity=0.612 Sum_probs=56.6
Q ss_pred cCCccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHHHhh
Q 011140 426 EAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVIDWL 488 (492)
Q Consensus 426 ~~v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~~r~ 488 (492)
.++..|+.|++.|+++.||||||+||+|||.+|+.+++.|+..+ .+++|||+.||+.|.++.
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g-~~~~RVC~~C~~~l~~~~ 68 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAG-NTQQKVCKQCHTILTRGS 68 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTT-SEEEEECHHHHHHHHHCC
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccC-CCcCEECHHHHHHHHhcc
Confidence 45779999999999999999999999999999999999998765 579999999999997754
No 9
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=99.70 E-value=4e-18 Score=163.46 Aligned_cols=67 Identities=36% Similarity=0.868 Sum_probs=61.2
Q ss_pred CCCCCcccCcCCccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHHH
Q 011140 417 EEKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVID 486 (492)
Q Consensus 417 e~~p~WvpD~~v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~~ 486 (492)
+..+.|+++ ..|+.|++.|+++.||||||+||+|||.+|+.+++.++..+..+++|||+.||+.|++
T Consensus 153 ~~~~~W~~~---~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~~~~~~~~~~~~RvC~~C~~~l~~ 219 (220)
T 1dvp_A 153 DTAPNWADG---RVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGCFAALQR 219 (220)
T ss_dssp SCCCCCCCC---SBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEEEEGGGTEEEEEEECHHHHHHHHH
T ss_pred cccccCCCC---CccCCCCCccCCcccccccCCcCCEEChHHhCCeeecCcCCCCCCCEeCHHHHHHHhc
Confidence 457899986 5999999999999999999999999999999999999887767899999999998864
No 10
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=99.64 E-value=3.3e-17 Score=145.31 Aligned_cols=62 Identities=24% Similarity=0.488 Sum_probs=43.9
Q ss_pred CCCCCcccCcCCccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHHH
Q 011140 417 EEKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVID 486 (492)
Q Consensus 417 e~~p~WvpD~~v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~~ 486 (492)
+....|.||.++..|+.|++.|+++.||||||+||+|||++||.++++ .+|||+.||..+..
T Consensus 8 ~~~~~~~Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~--------~vRVC~~C~~~~~~ 69 (120)
T 1y02_A 8 GYSSFPSPTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN--------GPRLCLLCQRFRAT 69 (120)
T ss_dssp ------------CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC------------CCEEHHHHHHHHT
T ss_pred CcccCCcCccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCC--------CceECHHHHHHHhc
Confidence 346789999999999999999999999999999999999999998864 49999999987654
No 11
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=99.60 E-value=7.7e-17 Score=165.89 Aligned_cols=69 Identities=33% Similarity=0.749 Sum_probs=0.0
Q ss_pred CCCCcccCcCCccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHHHh
Q 011140 418 EKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVIDW 487 (492)
Q Consensus 418 ~~p~WvpD~~v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~~r 487 (492)
..+.|++|.++..|+.|++.|+++.||||||+||+|||..||.++++++.. ..+++|||+.||+.|.++
T Consensus 365 ~~p~w~~~~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~-~~~~~rvC~~C~~~l~~~ 433 (434)
T 3mpx_A 365 RPPTLVPVTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYL-KDRMAKVCDGCFGELKKR 433 (434)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CCCcCCCcccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCC-CCCcCEecHHHHHHHHhC
Confidence 478999999999999999999999999999999999999999999988754 358999999999998654
No 12
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.32 E-value=6e-14 Score=112.72 Aligned_cols=78 Identities=14% Similarity=0.174 Sum_probs=70.4
Q ss_pred CCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCC
Q 011140 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (492)
Q Consensus 229 ~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Gad 308 (492)
+|.|+||+|+..+. .++|+.|++.|+++|.+|..|+||||+|+..|+.++++.|++.|++
T Consensus 1 ~g~t~L~~A~~~~~--------------------~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 60 (93)
T 1n0q_A 1 NGRTPLHLAARNGH--------------------LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60 (93)
T ss_dssp --CCHHHHHHHHTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCcHHHHHHHcCC--------------------HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 36788998776554 8999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCceeEEeecc
Q 011140 309 GIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 309 Gv~v~DkngnnaLHIApLe 327 (492)
++..|.+|.|+||+|...
T Consensus 61 -~~~~d~~g~t~l~~A~~~ 78 (93)
T 1n0q_A 61 -VNAKDKNGRTPLHLAARN 78 (93)
T ss_dssp -TTCCCTTSCCHHHHHHHT
T ss_pred -CCccCCCCCCHHHHHHHc
Confidence 999999999999998554
No 13
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.30 E-value=1.1e-13 Score=125.72 Aligned_cols=66 Identities=17% Similarity=0.258 Sum_probs=50.6
Q ss_pred CchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeecc
Q 011140 261 GSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 261 G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe 327 (492)
|+.+||++||++||++|.+|..|+||||+|++.|+.++|++|++.|++ ++..|.+|.|+||+|...
T Consensus 81 g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~ 146 (169)
T 4gpm_A 81 GHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTPLDLAREH 146 (169)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred CCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHc
Confidence 347778888888888887777788888888888777778888888877 777777787887777544
No 14
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.22 E-value=4.7e-13 Score=112.25 Aligned_cols=62 Identities=11% Similarity=0.063 Sum_probs=47.8
Q ss_pred chhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEe
Q 011140 262 SSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (492)
Q Consensus 262 ~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIA 324 (492)
+.++|+.|++.|+++|.+|..|+||||+|++.|+.++++.|++.|++ +++.|.+|.|+||+|
T Consensus 52 ~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 52 QLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD-KTVKGPDGLTAFEAT 113 (123)
T ss_dssp CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHC
T ss_pred CHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHh
Confidence 37777777777777777777777777777777777777777777777 777777777777776
No 15
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.20 E-value=1.5e-12 Score=125.67 Aligned_cols=66 Identities=8% Similarity=0.101 Sum_probs=43.2
Q ss_pred cCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEe
Q 011140 258 VGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (492)
Q Consensus 258 ~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIA 324 (492)
+..|+.++|++||+.||++|.+|..|+||||+|++.|+.++|++|++.|++ +++.|.+|.|+||+|
T Consensus 160 ~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad-~~~~d~~G~TpL~~A 225 (269)
T 4b93_B 160 CSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGAS-VQVLNKRQRTAVDCA 225 (269)
T ss_dssp HHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCSGGGS
T ss_pred HHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHH
Confidence 334456666666666666666666666666666666666666666666666 666666666666665
No 16
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.16 E-value=2.3e-12 Score=112.54 Aligned_cols=68 Identities=15% Similarity=0.091 Sum_probs=59.6
Q ss_pred CCchhhhhhcccCCcccccccccccc-eEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeeccc
Q 011140 260 SGSSKIVRAVPKVDTHQDVKSGVQKF-RVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 260 ~G~~~iVr~LlkagA~vn~kD~~gkT-pLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe~ 328 (492)
.|+.++|+.||+.|+++|.+|..|+| |||+|++.|+.++++.|++.|++ ++..|.+|.|+||+|....
T Consensus 54 ~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~ 122 (156)
T 1bi7_B 54 MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELG 122 (156)
T ss_dssp TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHT
T ss_pred cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhC
Confidence 34588999999999999999999998 99999999999999999999999 8888999999999986543
No 17
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.16 E-value=1.6e-12 Score=107.46 Aligned_cols=79 Identities=10% Similarity=0.108 Sum_probs=71.1
Q ss_pred CCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCC
Q 011140 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (492)
Q Consensus 229 ~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Gad 308 (492)
.|.|+||+|+..+ +.++|+.|++.|+++|.+|..|+|+||+|++.|+.++++.|++.|++
T Consensus 8 ~g~t~L~~A~~~~--------------------~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 67 (115)
T 2l6b_A 8 DGNTPLHNAAKNG--------------------HAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67 (115)
T ss_dssp SSCCHHHHHHHHT--------------------CHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC
T ss_pred CCCCHHHHHHHcC--------------------CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 4667788866554 49999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCceeEEeeccc
Q 011140 309 GIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 309 Gv~v~DkngnnaLHIApLe~ 328 (492)
++..|.+|.|+||+|....
T Consensus 68 -~~~~d~~g~tpl~~A~~~~ 86 (115)
T 2l6b_A 68 -VNARSKDGNTPEHLAKKNG 86 (115)
T ss_dssp -TTCCCTTCCCTTHHHHTTT
T ss_pred -CcccCCCCCCHHHHHHHCC
Confidence 8899999999999986653
No 18
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.16 E-value=2e-12 Score=110.13 Aligned_cols=66 Identities=14% Similarity=0.086 Sum_probs=44.4
Q ss_pred CchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeecc
Q 011140 261 GSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 261 G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe 327 (492)
|+.++|+.|++.|++++.+|..|+||||+|++.|+.++++.|++.|++ +++.|.+|.|+||+|..+
T Consensus 54 ~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~ 119 (137)
T 3c5r_A 54 GHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDE 119 (137)
T ss_dssp TCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGCCCH
T ss_pred CCHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhc
Confidence 346667777777777666666667777777776666667777777766 666666777776666443
No 19
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.15 E-value=3.3e-12 Score=109.12 Aligned_cols=63 Identities=14% Similarity=0.223 Sum_probs=30.9
Q ss_pred hhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCC-CCceeEEeecc
Q 011140 263 SKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPN-TSRTLRIYPLE 327 (492)
Q Consensus 263 ~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~Dkn-gnnaLHIApLe 327 (492)
.++|+.||+.|+++|.+|..|+|+||+|++ |+.++++.|++.|++ ++..|.+ |.|+||+|...
T Consensus 25 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~~g~t~L~~A~~~ 88 (136)
T 1d9s_A 25 VETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-PNCADPATLTRPVHDAARE 88 (136)
T ss_dssp HHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-SSCCBTTTTBCHHHHHHHH
T ss_pred HHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-CCCcCCCCCCCHHHHHHHc
Confidence 444555555555555444445555555554 444445555555544 4444444 44555544433
No 20
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.12 E-value=1.4e-12 Score=108.46 Aligned_cols=79 Identities=15% Similarity=0.097 Sum_probs=70.7
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Ga 307 (492)
..|.++||+|+..+ +.++|+.||+.|+++|.+|..|+|+||+|++.|+.++++.|++.|+
T Consensus 22 ~~g~t~L~~A~~~g--------------------~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga 81 (110)
T 2zgd_A 22 SDLGKKLLEAARAG--------------------QDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 81 (110)
T ss_dssp CCHHHHHHHHHHHT--------------------CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CccchHHHHHHHcC--------------------CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 34566788766655 4999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeEEeecc
Q 011140 308 DGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 308 dGv~v~DkngnnaLHIApLe 327 (492)
+ +++.|.+|.|+||+|...
T Consensus 82 ~-~~~~d~~g~tpl~~A~~~ 100 (110)
T 2zgd_A 82 D-VXAQDKFGKTAFDISIDN 100 (110)
T ss_dssp C-TTCCCTTSCCHHHHHHHH
T ss_pred C-ccccccCCCcHHHHHHHc
Confidence 9 999999999999998544
No 21
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.11 E-value=2.9e-12 Score=109.42 Aligned_cols=83 Identities=14% Similarity=0.084 Sum_probs=57.2
Q ss_pred ccCcCCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHH
Q 011140 224 YGARGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLC 303 (492)
Q Consensus 224 ~~~~g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLl 303 (492)
+.-.-.+.|+||+|+..+. .++|+.|++.|+++|.+|..|+|+||+|++.|+.++++.|+
T Consensus 8 ~~~~~~~~t~l~~A~~~g~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 67 (136)
T 2jab_A 8 HHHGSDLGKKLLEAARAGQ--------------------DDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLL 67 (136)
T ss_dssp ----CHHHHHHHHHHHHTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred CcccccccHHHHHHHHhCC--------------------HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 3444456667777665543 77777777777777777777777777777777777777777
Q ss_pred hcCCCCCcccCCCCCceeEEeecc
Q 011140 304 QIGLDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 304 q~GadGv~v~DkngnnaLHIApLe 327 (492)
+.|++ ++..|.+|.|+||+|...
T Consensus 68 ~~g~~-~~~~d~~g~t~L~~A~~~ 90 (136)
T 2jab_A 68 KNGAD-VNAVDAIGFTPLHLAAFI 90 (136)
T ss_dssp HTTCC-TTCCCTTCCCHHHHHHHH
T ss_pred HcCCC-CCcCCCCCCCHHHHHHHc
Confidence 77777 777777777777777655
No 22
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.11 E-value=3.8e-12 Score=115.45 Aligned_cols=80 Identities=13% Similarity=0.141 Sum_probs=67.3
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Ga 307 (492)
..|.|+||+|+..+. .++|+.||+.|++++.+|..|+||||+|++.|+.++|++|++.|+
T Consensus 35 ~~g~t~l~~a~~~~~--------------------~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga 94 (169)
T 4gpm_A 35 SDGRTPLHHAAENGH--------------------KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 94 (169)
T ss_dssp TTSCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcC
Confidence 346677887665554 888999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeEEeeccc
Q 011140 308 DGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 308 dGv~v~DkngnnaLHIApLe~ 328 (492)
+ ++..|.+|+|+||+|....
T Consensus 95 d-vn~~d~~G~TpLh~A~~~g 114 (169)
T 4gpm_A 95 D-VNAKDSDGRTPLHHAAENG 114 (169)
T ss_dssp C-TTCCCTTSCCHHHHHHHTT
T ss_pred C-CCCCCCCCCCHHHHHHHcC
Confidence 8 8888999999999986653
No 23
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.11 E-value=2.3e-12 Score=118.42 Aligned_cols=81 Identities=12% Similarity=0.039 Sum_probs=69.5
Q ss_pred CCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCc------hhhHHH
Q 011140 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQ------STMDVL 302 (492)
Q Consensus 229 ~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~------~iv~vL 302 (492)
.|.|+||+|+..+. . .+..+||+.||+.||++|.+|..|+||||+|+..|+. +++++|
T Consensus 37 ~g~T~Lh~A~~~~~---------~-------~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~L 100 (186)
T 3t8k_A 37 LKSNILYDVLRNNN---------D-------EARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIF 100 (186)
T ss_dssp HTTTHHHHHTTCSC---------H-------HHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCC---------c-------chHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHH
Confidence 47899999876543 0 0124699999999999999999999999999999974 579999
Q ss_pred HhcCCCCCcccCCCCC-ceeEEeec
Q 011140 303 CQIGLDGIRMLDPNTS-RTLRIYPL 326 (492)
Q Consensus 303 lq~GadGv~v~Dkngn-naLHIApL 326 (492)
++.|++ +++.|.+|. ++||+|..
T Consensus 101 l~~Gad-in~~d~~g~ttpLh~A~~ 124 (186)
T 3t8k_A 101 LEKGAD-ITALYKPYKIVVFKNIFN 124 (186)
T ss_dssp HHTTCC-SSSCBGGGTBCTTGGGGG
T ss_pred HHCCCC-CCccCCCcCchHHHHHHH
Confidence 999999 999999999 99999866
No 24
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.10 E-value=3.6e-12 Score=123.91 Aligned_cols=82 Identities=11% Similarity=0.035 Sum_probs=73.7
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Ga 307 (492)
..|.|+||+|+..+. .|+.+||++||++||++|.+|..|+||||+|++.|+.++|++|++.|+
T Consensus 167 ~~g~t~Lh~A~~~~~-----------------~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga 229 (278)
T 1dcq_A 167 EPDETALHLAVRSVD-----------------RTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA 229 (278)
T ss_dssp STTCBHHHHHHHHCC-----------------TTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cCCCCcchHHHHhcc-----------------cchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 347899999887631 245899999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeEEeecc
Q 011140 308 DGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 308 dGv~v~DkngnnaLHIApLe 327 (492)
+ +++.|.+|.|+||+|...
T Consensus 230 d-~~~~d~~g~tpL~~A~~~ 248 (278)
T 1dcq_A 230 S-IEIANESGETPLDIAKRL 248 (278)
T ss_dssp C-TTCCCTTSCCHHHHHHHT
T ss_pred C-CCCccCCCCCHHHHHHHc
Confidence 9 999999999999998544
No 25
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.09 E-value=8e-12 Score=106.68 Aligned_cols=69 Identities=14% Similarity=0.096 Sum_probs=64.5
Q ss_pred ccCCCchhhhhhcccCCccccccccc-ccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeecc
Q 011140 257 SVGSGSSKIVRAVPKVDTHQDVKSGV-QKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 257 ~~~~G~~~iVr~LlkagA~vn~kD~~-gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe 327 (492)
++. |+.++|+.|++.|+++|.+|.. |+||||+|++.|+.++++.|++.|++ +++.|.+|.|+||+|...
T Consensus 52 A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~ 121 (136)
T 1d9s_A 52 MMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQ 121 (136)
T ss_dssp STT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCC-CCCCSSSSSCHHHHHHHH
T ss_pred HHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHc
Confidence 556 7899999999999999999999 99999999999999999999999999 999999999999998544
No 26
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.07 E-value=6.9e-12 Score=112.54 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=32.0
Q ss_pred hhhhhhcccCCccccccc-ccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEe
Q 011140 263 SKIVRAVPKVDTHQDVKS-GVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (492)
Q Consensus 263 ~~iVr~LlkagA~vn~kD-~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIA 324 (492)
.++|+.|++.|+++|.+| ..|+||||+|++.|+.++++.|++.|++ +++.|.+|.|+||+|
T Consensus 89 ~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A 150 (183)
T 3deo_A 89 DKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELA 150 (183)
T ss_dssp HHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHH
T ss_pred HHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCC-CcCCCCCCCCHHHHH
Confidence 455555555555555554 4455555555555555555555555555 445555555555554
No 27
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.07 E-value=1e-11 Score=113.89 Aligned_cols=78 Identities=5% Similarity=0.033 Sum_probs=50.7
Q ss_pred CCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhc-CC
Q 011140 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQI-GL 307 (492)
Q Consensus 229 ~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~-Ga 307 (492)
.|.|+||+|+..+. .++|+.||+.|+++|.+|..|+|+||+|+..|+.++|+.|++. |+
T Consensus 72 ~g~t~L~~A~~~g~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~ 131 (222)
T 3ehr_A 72 SIDNPLHEAAKRGN--------------------LSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNI 131 (222)
T ss_dssp EESCHHHHHHHHTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTC
T ss_pred ccccccccccccCc--------------------HHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCC
Confidence 56678888765543 5666666666666666666666666666666666666666666 66
Q ss_pred CCCcccCCCCCceeEEeecc
Q 011140 308 DGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 308 dGv~v~DkngnnaLHIApLe 327 (492)
+ +++.|.+|.|+||+|...
T Consensus 132 ~-~~~~d~~g~tpL~~A~~~ 150 (222)
T 3ehr_A 132 E-LNQQNKLGDTALHAAAWK 150 (222)
T ss_dssp C-CCCCCTTSCCHHHHHHHH
T ss_pred C-ccccCCCCCCHHHHHHHc
Confidence 6 666666666666666554
No 28
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.06 E-value=3e-12 Score=109.32 Aligned_cols=79 Identities=15% Similarity=0.044 Sum_probs=70.7
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Ga 307 (492)
..|.|+||+|+..+ +.++|+.|++.|+++|.+|..|.|+||+|++.|+.++++.|++.|+
T Consensus 45 ~~g~t~L~~A~~~~--------------------~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 104 (136)
T 2jab_A 45 EYGLTPLYLATAHG--------------------HLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGA 104 (136)
T ss_dssp TTSCCHHHHHHHHT--------------------CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcC--------------------CHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 34667777766544 4899999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeEEeecc
Q 011140 308 DGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 308 dGv~v~DkngnnaLHIApLe 327 (492)
+ ++..|.+|.|+||+|...
T Consensus 105 ~-~~~~~~~g~tpl~~A~~~ 123 (136)
T 2jab_A 105 D-VNAQDKFGKTAFDISIGN 123 (136)
T ss_dssp C-TTCCCTTSCCHHHHHHHT
T ss_pred C-CcCcCCCCCCHHHHHHHC
Confidence 9 889999999999998554
No 29
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.06 E-value=5.5e-12 Score=107.31 Aligned_cols=80 Identities=9% Similarity=-0.026 Sum_probs=72.6
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Ga 307 (492)
..|.|+||+|+..+ +.++|+.||+.|+++|.+|..|+|+||+|++.|+.++++.|++.|+
T Consensus 8 ~~g~t~L~~A~~~~--------------------~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 67 (137)
T 3c5r_A 8 HRGETLLHIASIKG--------------------DIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA 67 (137)
T ss_dssp TTCCCHHHHHHHHT--------------------CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcC--------------------CHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 46788899877655 4899999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeEEeeccc
Q 011140 308 DGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 308 dGv~v~DkngnnaLHIApLe~ 328 (492)
+ ++..|.+|.|+||+|....
T Consensus 68 ~-~~~~~~~g~t~L~~A~~~~ 87 (137)
T 3c5r_A 68 L-VNTTGYQNDSPLHDAAKNG 87 (137)
T ss_dssp C-TTCCCGGGCCHHHHHHHTT
T ss_pred c-ccCcCCCCCCHHHHHHHcC
Confidence 9 8899999999999996553
No 30
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.06 E-value=1.3e-11 Score=116.88 Aligned_cols=77 Identities=8% Similarity=0.077 Sum_probs=71.4
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Ga 307 (492)
..|.|+||+|+..+. .+||+.|++.|+++|.+|..|+||||+|++.|+.++++.|++.|+
T Consensus 197 ~~g~t~L~~A~~~g~--------------------~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga 256 (299)
T 1s70_B 197 KSGGTALHVAAAKGY--------------------TEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC 256 (299)
T ss_dssp TTCCCHHHHHHHHTC--------------------HHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHCCc--------------------HHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCC
Confidence 357789999876654 899999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeEEee
Q 011140 308 DGIRMLDPNTSRTLRIYP 325 (492)
Q Consensus 308 dGv~v~DkngnnaLHIAp 325 (492)
+ +++.|..|.|+||+|.
T Consensus 257 d-~~~~d~~g~t~l~~A~ 273 (299)
T 1s70_B 257 D-MEAVNKVGQTAFDVAD 273 (299)
T ss_dssp C-TTCCCTTSCCTTTSCC
T ss_pred C-CCCcCCCCCCHHHHHH
Confidence 9 9999999999999983
No 31
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.06 E-value=5.2e-12 Score=105.83 Aligned_cols=68 Identities=16% Similarity=0.119 Sum_probs=63.2
Q ss_pred CCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeeccc
Q 011140 260 SGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 260 ~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe~ 328 (492)
.|+.++|+.|++.|+++|.+|..|+|+||+|++.|+.++++.|++.|++ ++..|.+|.|+||+|....
T Consensus 17 ~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~tpL~~A~~~~ 84 (123)
T 3aaa_C 17 NGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEG 84 (123)
T ss_dssp TTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHHT
T ss_pred cCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcC
Confidence 3359999999999999999999999999999999999999999999999 9999999999999996543
No 32
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.06 E-value=1.2e-11 Score=107.83 Aligned_cols=81 Identities=10% Similarity=0.022 Sum_probs=61.8
Q ss_pred cCCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcC
Q 011140 227 RGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (492)
Q Consensus 227 ~g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~G 306 (492)
.+.|.|+||+|+..+ +.++|+.|++.|+++|.+|..|+|+||+|++.|+.++++.|++.|
T Consensus 39 ~~~g~t~L~~A~~~~--------------------~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 98 (165)
T 3twr_A 39 EGRQSTPLHFAAGYN--------------------RVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG 98 (165)
T ss_dssp TTTCCCHHHHHHHTT--------------------CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred ccCCCCHHHHHHHcC--------------------hHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCC
Confidence 345678888876554 377888888888888888888888888888888878888888888
Q ss_pred CCCCcccCCCCCceeEEeeccc
Q 011140 307 LDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 307 adGv~v~DkngnnaLHIApLe~ 328 (492)
++ ++..|.+|.|+||+|....
T Consensus 99 ~~-~~~~~~~g~t~L~~A~~~~ 119 (165)
T 3twr_A 99 AV-VNVADLWKFTPLHEAAAKG 119 (165)
T ss_dssp CC-TTCCCTTCCCHHHHHHHTT
T ss_pred CC-CCCcCCCCCCHHHHHHHcC
Confidence 87 7777778888888877663
No 33
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.05 E-value=1.2e-11 Score=107.14 Aligned_cols=78 Identities=13% Similarity=0.116 Sum_probs=48.3
Q ss_pred CCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCC
Q 011140 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (492)
Q Consensus 229 ~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Gad 308 (492)
.|.|+||+|+..+. .++|+.|++.|+++|.+|..|+|+||+|++.|+.++++.|++.|++
T Consensus 33 ~g~t~L~~A~~~~~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 92 (153)
T 1awc_B 33 LGTSPLHLAAQYGH--------------------FSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD 92 (153)
T ss_dssp TCCCHHHHHHHHTC--------------------HHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCC
Confidence 45677777665443 5666666666666666666666666666666666666666666666
Q ss_pred CCcccCCCCCceeEEeecc
Q 011140 309 GIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 309 Gv~v~DkngnnaLHIApLe 327 (492)
++..|.+|.|+||+|...
T Consensus 93 -~~~~~~~g~t~L~~A~~~ 110 (153)
T 1awc_B 93 -VNAKDMLKMTALHWATEH 110 (153)
T ss_dssp -TTCCCTTSCCHHHHHHHT
T ss_pred -CCCCCCCCCCHHHHHHHc
Confidence 556666666666666544
No 34
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.04 E-value=1.8e-11 Score=108.60 Aligned_cols=80 Identities=14% Similarity=0.063 Sum_probs=66.8
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Ga 307 (492)
..|.|+||+|+..+ +.++|+.|++.|+++|.+|..|+|+||+|+..|+.++++.|++.|+
T Consensus 37 ~~g~t~L~~A~~~~--------------------~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 96 (179)
T 3f6q_A 37 DHGFSPLHWACREG--------------------RSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKA 96 (179)
T ss_dssp TTSCCHHHHHHHTT--------------------CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcC--------------------cHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 45778899977654 3788888888888888888888888888888888888888888888
Q ss_pred CCCcccCCCCCceeEEeeccc
Q 011140 308 DGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 308 dGv~v~DkngnnaLHIApLe~ 328 (492)
+ ++..|.+|.|+||+|....
T Consensus 97 ~-~~~~d~~g~t~L~~A~~~~ 116 (179)
T 3f6q_A 97 D-INAVNEHGNVPLHYACFWG 116 (179)
T ss_dssp C-TTCCCTTSCCHHHHHHHTT
T ss_pred C-CCccCCCCCCHHHHHHHcC
Confidence 8 8888888888888887663
No 35
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.03 E-value=2.3e-11 Score=113.38 Aligned_cols=80 Identities=13% Similarity=0.095 Sum_probs=51.6
Q ss_pred cCCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccc-cccceEEEeeccCCchhhHHHHhc
Q 011140 227 RGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSG-VQKFRVKLLAESGGQSTMDVLCQI 305 (492)
Q Consensus 227 ~g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~-~gkTpLHlAa~~G~~~iv~vLlq~ 305 (492)
-..|.|+||+|+..+. .++|+.||+.|+++|.++. .|+||||+|++.|+.++|++|++.
T Consensus 155 ~~~g~t~L~~A~~~g~--------------------~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ 214 (282)
T 1oy3_D 155 NYDGHTPLHVAVIHKD--------------------AEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214 (282)
T ss_dssp CTTSCCHHHHHHHTTC--------------------HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHcCC--------------------HHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence 3467789999876543 5666666666666666654 366666666666666666666666
Q ss_pred CCCCCcccCCCCCceeEEeecc
Q 011140 306 GLDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 306 GadGv~v~DkngnnaLHIApLe 327 (492)
|++ +++.|.+|.|+||+|...
T Consensus 215 gad-~~~~d~~g~tpL~~A~~~ 235 (282)
T 1oy3_D 215 GAD-PTARMYGGRTPLGSALLR 235 (282)
T ss_dssp TCC-TTCCCTTSCCHHHHHHTS
T ss_pred CCC-CcccccCCCCHHHHHHHc
Confidence 666 566666666666666554
No 36
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.02 E-value=2.4e-11 Score=110.31 Aligned_cols=78 Identities=12% Similarity=0.130 Sum_probs=42.9
Q ss_pred CCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcC-C
Q 011140 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG-L 307 (492)
Q Consensus 229 ~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~G-a 307 (492)
.|.|+||+|+..+. .++|+.|++.|++++.+|..|+|+||+|++.|+.++++.|++.| +
T Consensus 106 ~g~t~L~~A~~~~~--------------------~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 165 (228)
T 2dzn_A 106 QGVTCLHLAVGKKW--------------------FEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS 165 (228)
T ss_dssp TCCCHHHHHHHTTC--------------------HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHcCC--------------------HhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 46677887665433 45555555555555555555555555555555555555555555 4
Q ss_pred CCCcccCCCCCceeEEeecc
Q 011140 308 DGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 308 dGv~v~DkngnnaLHIApLe 327 (492)
+ ++..|.+|+|+||+|...
T Consensus 166 ~-~~~~d~~g~t~L~~A~~~ 184 (228)
T 2dzn_A 166 A-VNWQDKQGWTPLFHALAE 184 (228)
T ss_dssp C-SCCCCTTSCCHHHHHHHT
T ss_pred c-ccCcCCCCCCHHHHHHHc
Confidence 4 445555555555555444
No 37
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.02 E-value=1.6e-11 Score=117.90 Aligned_cols=70 Identities=19% Similarity=0.224 Sum_probs=56.9
Q ss_pred ccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHh-cCCCCCcccCCCCCceeEEeecc
Q 011140 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQ-IGLDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 257 ~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq-~GadGv~v~DkngnnaLHIApLe 327 (492)
|+..|+.+||+.||+.||++|.+|..|+||||+|++.|+.++|+.|++ .|++ +++.|.+|.|+||+|...
T Consensus 190 A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad-~~~~d~~g~TpL~~A~~~ 260 (276)
T 4hbd_A 190 AVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCD-ISLTDRDGSTALMVALDA 260 (276)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCC-TTCCCTTSCCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CcCcCCCCCCHHHHHHHc
Confidence 445556888888888888888888888888888888888888888888 7888 778888888888887444
No 38
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.02 E-value=1.9e-11 Score=127.58 Aligned_cols=83 Identities=11% Similarity=0.023 Sum_probs=74.2
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Ga 307 (492)
..|.|+||+|+.- +..|+.+||++||++||++|.+|..|+||||+|++.|+.++|++||+.||
T Consensus 169 ~~g~t~Lh~A~~~-----------------a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga 231 (497)
T 3lvq_E 169 APEELVLHLAVKV-----------------ANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRA 231 (497)
T ss_dssp CSCBCHHHHHHHT-----------------CCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCC
T ss_pred cccchHHHHHHHh-----------------cccccHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 4678899998541 22456999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeEEeeccc
Q 011140 308 DGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 308 dGv~v~DkngnnaLHIApLe~ 328 (492)
+ +++.|.+|.|+||+|....
T Consensus 232 ~-~~~~d~~g~tpl~~A~~~~ 251 (497)
T 3lvq_E 232 L-VGTVNEAGETALDIARKKH 251 (497)
T ss_dssp C-CSCCCTTCCCHHHHHHHTT
T ss_pred C-CCCcCCCCCCHHHHHHHcC
Confidence 9 9999999999999997664
No 39
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.02 E-value=1.7e-11 Score=115.75 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=31.8
Q ss_pred hhhhhhcccCCccccccc-ccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEe
Q 011140 263 SKIVRAVPKVDTHQDVKS-GVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (492)
Q Consensus 263 ~~iVr~LlkagA~vn~kD-~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIA 324 (492)
.+||+.||++|+++|.+| ..|+||||+|++.|+.++|++|++.|++ +++.|.+|.|+||+|
T Consensus 90 ~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A 151 (244)
T 3ui2_A 90 DKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELA 151 (244)
T ss_dssp HHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHH
T ss_pred HHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHH
Confidence 455555555555555554 4455555555555555555555555555 445555555555554
No 40
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.01 E-value=1.8e-11 Score=114.55 Aligned_cols=71 Identities=14% Similarity=0.113 Sum_probs=66.7
Q ss_pred ccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeeccc
Q 011140 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 257 ~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe~ 328 (492)
++..|+.++|+.||+.|+++|.+|..|+|+||+|++.|+.++++.|++.|++ ++..|.+|.|+||+|....
T Consensus 44 A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~ 114 (239)
T 1ycs_B 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCN 114 (239)
T ss_dssp HHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcC
Confidence 5567789999999999999999999999999999999999999999999999 9999999999999997654
No 41
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.01 E-value=1.6e-11 Score=106.30 Aligned_cols=65 Identities=18% Similarity=0.192 Sum_probs=49.1
Q ss_pred hhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeeccc
Q 011140 263 SKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 263 ~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe~ 328 (492)
.++|+.|++.|+++|.+|..|+|+||+|++.|+.++++.|++.|++ ++..|.+|.|+||+|....
T Consensus 50 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 114 (162)
T 1ihb_A 50 PEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEG 114 (162)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcC
Confidence 6777777777777777777777777777777777777777777777 7777777777777776653
No 42
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.01 E-value=2e-11 Score=108.37 Aligned_cols=68 Identities=12% Similarity=0.163 Sum_probs=61.4
Q ss_pred CCchhhhhhcccC-CcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeeccc
Q 011140 260 SGSSKIVRAVPKV-DTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 260 ~G~~~iVr~Llka-gA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe~ 328 (492)
.|+.++|+.||+. +.++|.+|..|+|+||+|++.|+.++++.|++.|++ ++..|.+|.|+||+|....
T Consensus 15 ~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 83 (179)
T 3f6q_A 15 EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAASHG 83 (179)
T ss_dssp HTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTT
T ss_pred cCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcC
Confidence 3458999999888 778999999999999999999999999999999999 8899999999999998774
No 43
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.01 E-value=1.8e-11 Score=114.20 Aligned_cols=77 Identities=10% Similarity=0.074 Sum_probs=70.3
Q ss_pred CCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCccccccc--------------ccccceEEEeeccC
Q 011140 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKS--------------GVQKFRVKLLAESG 294 (492)
Q Consensus 229 ~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD--------------~~gkTpLHlAa~~G 294 (492)
.|.|+||+|+..+ +.+||+.||+.|+++|.+| ..|+||||+|++.|
T Consensus 92 ~g~t~L~~A~~~g--------------------~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g 151 (260)
T 3jxi_A 92 RGQTALHIAIERR--------------------CKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN 151 (260)
T ss_dssp ESBCHHHHHHHTT--------------------CHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTT
T ss_pred CCCCHHHHHHHcC--------------------CHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcC
Confidence 5778899876654 4999999999999999998 68999999999999
Q ss_pred CchhhHHHHh---cCCCCCcccCCCCCceeEEeec
Q 011140 295 GQSTMDVLCQ---IGLDGIRMLDPNTSRTLRIYPL 326 (492)
Q Consensus 295 ~~~iv~vLlq---~GadGv~v~DkngnnaLHIApL 326 (492)
+.++|+.|++ .|++ ++..|.+|+|+||+|..
T Consensus 152 ~~~~v~~Ll~~~~~ga~-~~~~d~~g~TpLh~A~~ 185 (260)
T 3jxi_A 152 QPHIVHYLTENGHKQAD-LRRQDSRGNTVLHALVA 185 (260)
T ss_dssp CHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHH
T ss_pred CHHHHHHHHhccccCCC-CcccCCCCCcHHHHHHH
Confidence 9999999999 9999 99999999999999963
No 44
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.01 E-value=2.9e-11 Score=105.47 Aligned_cols=64 Identities=17% Similarity=0.067 Sum_probs=36.6
Q ss_pred hhhhhhccc-CCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeecc
Q 011140 263 SKIVRAVPK-VDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 263 ~~iVr~Llk-agA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe 327 (492)
.++|+.|++ .+.+++..|..++|+||+|++.|+.++++.|++.|++ ++..|.+|.|+||+|...
T Consensus 21 ~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 85 (165)
T 3twr_A 21 VETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNACSY 85 (165)
T ss_dssp HHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC-CCccCCCCCCHHHHHHHc
Confidence 555555555 3334445555555666666666666666666666665 555566666666665544
No 45
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.00 E-value=1.2e-11 Score=113.70 Aligned_cols=86 Identities=8% Similarity=-0.057 Sum_probs=71.5
Q ss_pred cCCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCccccccccccc-ceEEEeeccCCc-----hhhH
Q 011140 227 RGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQK-FRVKLLAESGGQ-----STMD 300 (492)
Q Consensus 227 ~g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gk-TpLHlAa~~G~~-----~iv~ 300 (492)
-..|.|+||+|++.+. ....+..+||++||++||++|.+|..|+ ||||+|+..+.. ++++
T Consensus 72 d~~g~TpLh~a~~~~~--------------~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~ 137 (186)
T 3t8k_A 72 TKEGTTLFFPLFQGGG--------------NDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYK 137 (186)
T ss_dssp CTTCCCTHHHHHHHCT--------------TCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHH
T ss_pred CCCCCcHHHHHHHcCC--------------cchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHH
Confidence 3568899999987653 0111236899999999999999999999 999999995543 5899
Q ss_pred HHHh-cCCCCCcccCCCCCceeEEeecc
Q 011140 301 VLCQ-IGLDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 301 vLlq-~GadGv~v~DkngnnaLHIApLe 327 (492)
+|++ .|++ +++.|..|.|+||+|...
T Consensus 138 ~Ll~~~gad-~~~~d~~G~TpL~~A~~~ 164 (186)
T 3t8k_A 138 LIFSQSGLQ-LLIKDKWGLTALEFVKRC 164 (186)
T ss_dssp HHHTSTTCC-TTCCCTTSCCHHHHHHTT
T ss_pred HHHHhcCCC-CcccCCCCCCHHHHHHHc
Confidence 9999 9999 999999999999998544
No 46
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.00 E-value=2.5e-11 Score=106.53 Aligned_cols=80 Identities=14% Similarity=0.030 Sum_probs=63.6
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Ga 307 (492)
..|.|+||+|+..+ +.++|+.|++.|+++|.+|..|+|+||+|++.|+.++++.|++.|+
T Consensus 34 ~~g~t~L~~A~~~~--------------------~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 93 (172)
T 3v30_A 34 ERGFTPLIWASAFG--------------------EIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDV 93 (172)
T ss_dssp TTSCCHHHHHHHTT--------------------CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHcC--------------------CHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence 45778899876554 3788888888888888888888888888888888888888888888
Q ss_pred CCCcccCCCCCceeEEeeccc
Q 011140 308 DGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 308 dGv~v~DkngnnaLHIApLe~ 328 (492)
+ ++..|.+|.|+||+|....
T Consensus 94 ~-~~~~~~~g~t~L~~A~~~~ 113 (172)
T 3v30_A 94 D-INIYDWNGGTPLLYAVRGN 113 (172)
T ss_dssp C-TTCCCTTSCCHHHHHHHTT
T ss_pred C-CCCCCCCCCCHHHHHHHcC
Confidence 8 7778888888888887663
No 47
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.00 E-value=2e-11 Score=113.69 Aligned_cols=63 Identities=8% Similarity=0.030 Sum_probs=32.7
Q ss_pred hhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCC-CCceeEEeecc
Q 011140 264 KIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPN-TSRTLRIYPLE 327 (492)
Q Consensus 264 ~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~Dkn-gnnaLHIApLe 327 (492)
.+++.|+..+++++.+|..|+|+||+|++.|+.++++.|++.|++ ++..+.. |.|+||+|...
T Consensus 139 ~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~ 202 (282)
T 1oy3_D 139 EEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEA 202 (282)
T ss_dssp -----CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHT
T ss_pred hhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcCHHHHHHHc
Confidence 344455555555555555555566665555555555555555555 5444433 55555555544
No 48
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.00 E-value=2.4e-11 Score=113.30 Aligned_cols=77 Identities=9% Similarity=0.043 Sum_probs=70.6
Q ss_pred CCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCccccccccc-------------ccceEEEeeccCC
Q 011140 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGV-------------QKFRVKLLAESGG 295 (492)
Q Consensus 229 ~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~-------------gkTpLHlAa~~G~ 295 (492)
.|.|+||+|+..+ +.+||+.||+.|+++|.+|.. |+||||+|++.|+
T Consensus 89 ~g~t~L~~A~~~g--------------------~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~ 148 (256)
T 2etb_A 89 QGHSALHIAIEKR--------------------SLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 148 (256)
T ss_dssp TTCCHHHHHHHTT--------------------CHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTC
T ss_pred cCCCHHHHHHHcC--------------------CHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCC
Confidence 4788899877655 499999999999999999886 9999999999999
Q ss_pred chhhHHHHh---cCCCCCcccCCCCCceeEEeec
Q 011140 296 QSTMDVLCQ---IGLDGIRMLDPNTSRTLRIYPL 326 (492)
Q Consensus 296 ~~iv~vLlq---~GadGv~v~DkngnnaLHIApL 326 (492)
.++++.|++ .|++ ++..|.+|+|+||+|..
T Consensus 149 ~~~v~~Ll~~~~~ga~-~n~~d~~g~TpLh~A~~ 181 (256)
T 2etb_A 149 WDVVTYLLENPHQPAS-LEATDSLGNTVLHALVM 181 (256)
T ss_dssp HHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHH
T ss_pred HHHHHHHHhccccCCC-cCccCCCCCCHHHHHHH
Confidence 999999999 9999 99999999999999965
No 49
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.00 E-value=3.1e-11 Score=111.25 Aligned_cols=70 Identities=10% Similarity=0.082 Sum_probs=59.3
Q ss_pred ccCCCchhhhhhcccCCcccccccc-cccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeecc
Q 011140 257 SVGSGSSKIVRAVPKVDTHQDVKSG-VQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 257 ~~~~G~~~iVr~LlkagA~vn~kD~-~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe 327 (492)
++..|+.+||+.||+.|+++|.+|. .|+||||+|++.|+.++++.|++.|++ +++.|.+|.|+||+|...
T Consensus 124 A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~ 194 (236)
T 1ikn_D 124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGR 194 (236)
T ss_dssp HHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCTTS
T ss_pred HHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccCCCCCHHHHHHcc
Confidence 4566778899999999999988887 888999999998888889999999988 888888888888888544
No 50
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=98.99 E-value=3.3e-11 Score=110.04 Aligned_cols=64 Identities=11% Similarity=0.092 Sum_probs=34.8
Q ss_pred CCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEe
Q 011140 260 SGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (492)
Q Consensus 260 ~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIA 324 (492)
.|+.++|+.|++.|+++|.+|..|+|+||+|++.|+.++++.|++.|++ +++.|.+|.|+||+|
T Consensus 160 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A 223 (241)
T 1k1a_A 160 NNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVA 223 (241)
T ss_dssp TTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCTTTTC
T ss_pred cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCC-CCCcCCCCCCHHHHH
Confidence 3445555555555555555555555555555555555555555555555 455555555555554
No 51
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=98.99 E-value=2.4e-11 Score=113.67 Aligned_cols=65 Identities=9% Similarity=0.079 Sum_probs=60.3
Q ss_pred CCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCC-ceeEEe
Q 011140 259 GSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTS-RTLRIY 324 (492)
Q Consensus 259 ~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~Dkngn-naLHIA 324 (492)
..|+.+||+.||++|+++|.+|..|+||||+|++.|+.+++++|++.|++ ++..|.++. |+||+|
T Consensus 79 ~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~t~l~~a 144 (239)
T 1ycs_B 79 CAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAA-VFAMTYSDMQTAADKC 144 (239)
T ss_dssp HHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHC
T ss_pred HcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cceecCCCCcchHHHH
Confidence 33459999999999999999999999999999999999999999999999 888888877 999987
No 52
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=98.98 E-value=2.6e-11 Score=105.02 Aligned_cols=70 Identities=19% Similarity=0.154 Sum_probs=60.7
Q ss_pred ccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeeccc
Q 011140 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 257 ~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe~ 328 (492)
|+..|+.++|+.|++.|++++ .|..|+|+||+|++.|+.++++.|++.|++ ++..|..|.|+||+|....
T Consensus 9 A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 78 (153)
T 1awc_B 9 AARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEG 78 (153)
T ss_dssp HHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcC
Confidence 344556999999999999887 588899999999999999999999999999 8889999999999997663
No 53
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=98.98 E-value=2.7e-11 Score=108.49 Aligned_cols=80 Identities=9% Similarity=-0.073 Sum_probs=64.7
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Ga 307 (492)
..|.|+||+|+..+. .++|+.|++.|++++.+|..|+|+||+|+..|+.++++.|++.|+
T Consensus 66 ~~g~t~L~~A~~~~~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 125 (192)
T 2rfm_A 66 IEGSTALIWAVKNNR--------------------LGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGA 125 (192)
T ss_dssp TTSCCHHHHHHHTTC--------------------HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred ccCccHHHHHHHcCC--------------------HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Confidence 356789999776543 788888888888888888888888888888888888888888888
Q ss_pred CCCcccCCCCCceeEEeeccc
Q 011140 308 DGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 308 dGv~v~DkngnnaLHIApLe~ 328 (492)
+ ++..|.+|.|+||+|....
T Consensus 126 ~-~~~~~~~g~t~L~~A~~~~ 145 (192)
T 2rfm_A 126 N-VNDRNLEGETPLIVASKYG 145 (192)
T ss_dssp C-SSCCCTTCCCHHHHHHHHT
T ss_pred C-CCCCCCCCCCHHHHHHHcC
Confidence 8 7788888888888887653
No 54
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=98.98 E-value=3.2e-11 Score=104.38 Aligned_cols=66 Identities=9% Similarity=0.132 Sum_probs=55.9
Q ss_pred CchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeeccc
Q 011140 261 GSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 261 G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe~ 328 (492)
|+.++|+.|++.|+++|.+|..|+|+||+|+. |+.++++.|++.|++ ++..|.+|.|+||+|....
T Consensus 16 g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 81 (162)
T 1ihb_A 16 GDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN-PDLKDRTGFAVIHDAARAG 81 (162)
T ss_dssp TCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHT
T ss_pred CCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcC
Confidence 34888888888888888888888888888888 888888888888888 7788888888888887664
No 55
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=98.97 E-value=2.7e-11 Score=106.33 Aligned_cols=67 Identities=12% Similarity=0.097 Sum_probs=62.0
Q ss_pred CchhhhhhcccCCcc-cccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeeccc
Q 011140 261 GSSKIVRAVPKVDTH-QDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 261 G~~~iVr~LlkagA~-vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe~ 328 (492)
|+.++|+.|++.+.. +|.+|..|+|+||+|++.|+.++++.|++.|++ ++..|.+|.++||+|....
T Consensus 13 g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 13 GELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSLASTGG 80 (172)
T ss_dssp TCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTT
T ss_pred CCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-chhhcccCCCHHHHHHHCC
Confidence 348999999999987 899999999999999999999999999999999 8899999999999998774
No 56
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=98.97 E-value=3.5e-11 Score=113.47 Aligned_cols=77 Identities=12% Similarity=0.065 Sum_probs=70.7
Q ss_pred CCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccc--------------cccceEEEeeccC
Q 011140 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSG--------------VQKFRVKLLAESG 294 (492)
Q Consensus 229 ~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~--------------~gkTpLHlAa~~G 294 (492)
.|.|+||+|+..+ +.+||++||++|+++|.+|. .|+||||+|++.|
T Consensus 100 ~g~tpL~~A~~~g--------------------~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g 159 (273)
T 2pnn_A 100 KGQTALHIAIERR--------------------NMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN 159 (273)
T ss_dssp TTCCHHHHHHHTT--------------------CHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTT
T ss_pred CCCCHHHHHHHcC--------------------CHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcC
Confidence 5788999977654 49999999999999999987 7999999999999
Q ss_pred CchhhHHHHh---cCCCCCcccCCCCCceeEEeec
Q 011140 295 GQSTMDVLCQ---IGLDGIRMLDPNTSRTLRIYPL 326 (492)
Q Consensus 295 ~~~iv~vLlq---~GadGv~v~DkngnnaLHIApL 326 (492)
+.++++.|++ .|++ +++.|.+|+|+||+|..
T Consensus 160 ~~~~v~~Ll~~~~~gad-~~~~d~~g~tpLh~A~~ 193 (273)
T 2pnn_A 160 QLAIVKFLLQNSWQPAD-ISARDSVGNTVLHALVE 193 (273)
T ss_dssp CHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHH
T ss_pred CHHHHHHHHhcccCCCC-ceeeCCCCCcHHHHHHH
Confidence 9999999999 9999 99999999999999865
No 57
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=98.96 E-value=4.4e-11 Score=104.52 Aligned_cols=79 Identities=13% Similarity=0.061 Sum_probs=62.7
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Ga 307 (492)
|.|.|+||+|+..+ +.++|+.|++.|+++|.+|..|.|+||+|++.|+.++++.|++.|+
T Consensus 1 G~~~t~L~~A~~~g--------------------~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 60 (167)
T 3v31_A 1 GANSLSVHQLAAQG--------------------EMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60 (167)
T ss_dssp CTTCCCHHHHHHTT--------------------CHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCcchHHHHHHCC--------------------CHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence 67889999976554 4788888888888888888888888888888888888888888888
Q ss_pred CCCcccCCCCCceeEEeecc
Q 011140 308 DGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 308 dGv~v~DkngnnaLHIApLe 327 (492)
+ ++..|..|.++||+|...
T Consensus 61 ~-~~~~~~~g~t~L~~A~~~ 79 (167)
T 3v31_A 61 D-PQLLGKGRESALSLACSK 79 (167)
T ss_dssp C-TTCCCTTCCCHHHHHHHH
T ss_pred C-CCCcCCCCCcHHHHHHHc
Confidence 7 777788888888887554
No 58
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=98.96 E-value=4.1e-11 Score=105.67 Aligned_cols=79 Identities=16% Similarity=0.142 Sum_probs=58.7
Q ss_pred CCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCC
Q 011140 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (492)
Q Consensus 229 ~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Gad 308 (492)
.|.|+||+|+..+ +.++|+.|++.|++++.+|..|+|+||+|++.|+.++++.|++.|++
T Consensus 46 ~g~t~L~~A~~~~--------------------~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 105 (169)
T 2y1l_E 46 SGWTPLHLAAFNG--------------------HLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD 105 (169)
T ss_dssp TSCCHHHHHHHTT--------------------CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHcC--------------------CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 4677888866544 37777777777777777777777777777777777777777777777
Q ss_pred CCcccCCCCCceeEEeeccc
Q 011140 309 GIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 309 Gv~v~DkngnnaLHIApLe~ 328 (492)
++..|.+|.|+||+|....
T Consensus 106 -~~~~~~~g~t~L~~A~~~~ 124 (169)
T 2y1l_E 106 -VNANDMEGHTPLHLAAMFG 124 (169)
T ss_dssp -TTCCCTTSCCHHHHHHHTT
T ss_pred -CCCCCCCCCCHHHHHHHcC
Confidence 7777777777777776653
No 59
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=98.96 E-value=3.6e-11 Score=115.93 Aligned_cols=100 Identities=12% Similarity=0.129 Sum_probs=78.7
Q ss_pred CCCCCCCccccccccCCcccC----------CCCcc---cccccCCCchhhhhhcccCCcccccccccccceEEEeeccC
Q 011140 228 GTVPKSSNSTLFDDYGRSISF----------PSAKD---SRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESG 294 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~----------~s~~~---~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G 294 (492)
..|.|+||+|+..+.-..+-+ ..... --.++..++.+|++.|++.|+++|.+|..|+||||+|++.|
T Consensus 84 ~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g 163 (269)
T 4b93_B 84 QDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGG 163 (269)
T ss_dssp TTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTT
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
Confidence 457799999987754222211 10000 01355677899999999999999999999999999999999
Q ss_pred CchhhHHHHhcCCCCCcccCCCCCceeEEeeccc
Q 011140 295 GQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 295 ~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe~ 328 (492)
+.++|++|++.|++ ++..|..|.|+||+|....
T Consensus 164 ~~~~v~~Ll~~gad-vn~~~~~g~t~Lh~A~~~g 196 (269)
T 4b93_B 164 HHELVALLLQHGAS-INASNNKGNTALHEAVIEK 196 (269)
T ss_dssp CGGGHHHHHHTTCC-TTCBCTTSCBHHHHHHHTT
T ss_pred CHHHHHHHHHCCCC-CCccccCCCcHHHHHHHcC
Confidence 99999999999999 8999999999999997664
No 60
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=98.96 E-value=4.2e-11 Score=109.52 Aligned_cols=71 Identities=21% Similarity=0.261 Sum_probs=65.3
Q ss_pred ccCCCchhhhhhcccCCcccccccc-------------cccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEE
Q 011140 257 SVGSGSSKIVRAVPKVDTHQDVKSG-------------VQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRI 323 (492)
Q Consensus 257 ~~~~G~~~iVr~LlkagA~vn~kD~-------------~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHI 323 (492)
|+..|+.++|+.|++.|++++.++. .|+|+||+|++.|+.++++.|++.|++ ++..|.+|+|+||+
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~ 160 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD-IRAQDSLGNTVLHI 160 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHH
Confidence 4556779999999999999999876 799999999999999999999999999 99999999999999
Q ss_pred eeccc
Q 011140 324 YPLEN 328 (492)
Q Consensus 324 ApLe~ 328 (492)
|....
T Consensus 161 A~~~~ 165 (232)
T 2rfa_A 161 LILQP 165 (232)
T ss_dssp HHTCS
T ss_pred HHHcC
Confidence 97664
No 61
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=98.95 E-value=3.5e-11 Score=103.72 Aligned_cols=66 Identities=21% Similarity=0.217 Sum_probs=55.8
Q ss_pred chhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeeccc
Q 011140 262 SSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 262 ~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe~ 328 (492)
+.++|+.|++.|+++|.+|..|+|+||+|++.|+.++++.|++.|++ ++..|.+|.|+||+|....
T Consensus 47 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 112 (156)
T 1bd8_A 47 STAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEG 112 (156)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHT
T ss_pred CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhC
Confidence 37888888888888888888888888888888888888888888888 8888888888888887663
No 62
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=98.95 E-value=6e-11 Score=111.59 Aligned_cols=64 Identities=13% Similarity=0.026 Sum_probs=39.9
Q ss_pred hhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeecc
Q 011140 263 SKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 263 ~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe 327 (492)
.++|+.||+.|+++|.+|..|+|+||+|++.|+.++++.|++.|++ ++..|..|.|+||+|...
T Consensus 34 ~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~tpLh~A~~~ 97 (229)
T 2vge_A 34 LEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGAN-VNSPDSHGWTPLHCAASC 97 (229)
T ss_dssp HHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHT
T ss_pred HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHc
Confidence 5666666666666666666666666666666666666666666666 556666666666666554
No 63
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=98.95 E-value=5e-11 Score=113.96 Aligned_cols=83 Identities=13% Similarity=0.117 Sum_probs=52.4
Q ss_pred cCCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcC
Q 011140 227 RGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (492)
Q Consensus 227 ~g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~G 306 (492)
...+.|+||+|+.... .+..++|+.|++.|+++|.+|..|+|+||+|++.|+.++++.|++.|
T Consensus 208 ~~~~~t~L~~A~~~~~-----------------~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 270 (351)
T 3utm_A 208 PQSHETALHCAVASLH-----------------PKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG 270 (351)
T ss_dssp TTTCCCHHHHHHHCCS-----------------TTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHhC-----------------ccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 3567788888886532 12355666666666666666666666666666666666666666666
Q ss_pred CCCCcccCCCCCceeEEeecc
Q 011140 307 LDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 307 adGv~v~DkngnnaLHIApLe 327 (492)
++ ++..|..|+|+||+|...
T Consensus 271 a~-~n~~d~~g~t~L~~A~~~ 290 (351)
T 3utm_A 271 AK-MNALDSLGQTALHRAALA 290 (351)
T ss_dssp CC-TTCCCTTSCCHHHHHHHH
T ss_pred CC-CCCcCCCCCCHHHHHHHc
Confidence 66 666666666666666554
No 64
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=98.95 E-value=5.8e-11 Score=108.64 Aligned_cols=79 Identities=11% Similarity=0.060 Sum_probs=49.7
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Ga 307 (492)
..|.|+||+|+..+. .++|+.|++.|++++.+|..|+|+||+|++.|+.++++.|++.|+
T Consensus 109 ~~g~t~L~~A~~~~~--------------------~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 168 (237)
T 3b7b_A 109 DGGWTPMIWATEYKH--------------------VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKC 168 (237)
T ss_dssp TTSCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence 456788888765443 566666666666666666666666666666666666666666666
Q ss_pred CCCcccCCCCCceeEEeecc
Q 011140 308 DGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 308 dGv~v~DkngnnaLHIApLe 327 (492)
+ ++..|.+|.|+||+|...
T Consensus 169 ~-~~~~~~~g~t~L~~A~~~ 187 (237)
T 3b7b_A 169 D-LHAVNIHGDSPLHIAARE 187 (237)
T ss_dssp C-TTCCCTTCCCHHHHHHHT
T ss_pred C-CCCcCCCCCCHHHHHHHh
Confidence 6 555666666666666554
No 65
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=98.94 E-value=8.2e-11 Score=101.41 Aligned_cols=65 Identities=15% Similarity=0.110 Sum_probs=44.0
Q ss_pred CchhhhhhcccC-CcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeecc
Q 011140 261 GSSKIVRAVPKV-DTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 261 G~~~iVr~Llka-gA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe 327 (492)
|+.++|+.|++. +.++|.+|..|+|+||+ +..|+.++++.|++.|++ ++..|..|.|+||+|...
T Consensus 13 g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 78 (156)
T 1bd8_A 13 GDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS-PNVQDTSGTSPVHDAART 78 (156)
T ss_dssp TCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred CCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHc
Confidence 346666666666 33666667777777777 666777777777777777 666677777777776655
No 66
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=98.94 E-value=4.5e-11 Score=111.99 Aligned_cols=81 Identities=10% Similarity=-0.004 Sum_probs=65.5
Q ss_pred cCCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcC
Q 011140 227 RGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (492)
Q Consensus 227 ~g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~G 306 (492)
...|.|+||+|+..+. .++|+.|++.|+++|.+|..|+|+||+|++.|+.++++.|++.|
T Consensus 121 ~~~g~t~L~~A~~~~~--------------------~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g 180 (253)
T 1yyh_A 121 MHDGTTPLILAARLAV--------------------EGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 180 (253)
T ss_dssp CTTCCCHHHHHHHHTC--------------------SSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT
T ss_pred CCCCCcHHHHHHHcCh--------------------HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 3467899999876554 77888888888888888888888888888888888888888888
Q ss_pred CCCCcccCCCCCceeEEeeccc
Q 011140 307 LDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 307 adGv~v~DkngnnaLHIApLe~ 328 (492)
++ +++.|.+|.|+||+|....
T Consensus 181 a~-~~~~~~~g~tpL~~A~~~~ 201 (253)
T 1yyh_A 181 AN-KDMQNNREETPLFLAAREG 201 (253)
T ss_dssp CC-TTCCCTTSCCHHHHHHHHT
T ss_pred CC-CCCcCCCCCCHHHHHHHCC
Confidence 88 7788888888888886653
No 67
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=98.94 E-value=5.1e-11 Score=105.06 Aligned_cols=80 Identities=18% Similarity=0.147 Sum_probs=71.3
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Ga 307 (492)
..+.++|++|+..+ +.++|+.|++.|+++|.+|..|+|+||+|++.|+.++++.|++.|+
T Consensus 12 ~~~~~~l~~A~~~g--------------------~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 71 (169)
T 2y1l_E 12 SDLGKKLLEAARAG--------------------RDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA 71 (169)
T ss_dssp -CHHHHHHHHHHHT--------------------CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CcccchHHHHHHcC--------------------CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 34456688866555 5999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeEEeeccc
Q 011140 308 DGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 308 dGv~v~DkngnnaLHIApLe~ 328 (492)
+ ++..|..|.|+||+|....
T Consensus 72 ~-~~~~~~~g~t~L~~A~~~~ 91 (169)
T 2y1l_E 72 D-VNAVDHAGMTPLRLAALFG 91 (169)
T ss_dssp C-TTCCCTTSCCHHHHHHHTT
T ss_pred C-CCccCCCCCCHHHHHHHcC
Confidence 9 8899999999999998774
No 68
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=98.94 E-value=8e-11 Score=102.72 Aligned_cols=79 Identities=13% Similarity=0.138 Sum_probs=70.2
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Ga 307 (492)
..+.|+||+|+..+ +.++|+.||+.|+++|.+|..|+|+||+|+ .|+.++++.|++.|+
T Consensus 10 ~~~~t~L~~A~~~g--------------------~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~ 68 (156)
T 1bi7_B 10 EPSADWLATAAARG--------------------RVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGA 68 (156)
T ss_dssp CCSTTHHHHHHHHT--------------------CHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTC
T ss_pred ccchHHHHHHHHcC--------------------CHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCC
Confidence 35677888876655 499999999999999999999999999986 899999999999999
Q ss_pred CCCcccCCCCCc-eeEEeeccc
Q 011140 308 DGIRMLDPNTSR-TLRIYPLEN 328 (492)
Q Consensus 308 dGv~v~Dkngnn-aLHIApLe~ 328 (492)
+ ++..|.+|.+ +||+|....
T Consensus 69 ~-~~~~d~~g~ttpL~~A~~~~ 89 (156)
T 1bi7_B 69 E-PNCADPATLTRPVHDAAREG 89 (156)
T ss_dssp C-CCCCCTTTCCCHHHHHHHHT
T ss_pred C-CCCcCCCCCcHHHHHHHHCC
Confidence 9 9999999999 999996653
No 69
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=98.94 E-value=3.9e-11 Score=118.04 Aligned_cols=83 Identities=11% Similarity=0.015 Sum_probs=73.0
Q ss_pred cCCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcC
Q 011140 227 RGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (492)
Q Consensus 227 ~g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~G 306 (492)
...|.|+||+|+.... .|+.+||++||+.||++|.+|..|+||||+|++.|+.++|++||+.|
T Consensus 187 ~~~g~t~Lh~A~~~~~-----------------~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g 249 (301)
T 2b0o_E 187 QAPEELVLHLAVKVAN-----------------QASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 249 (301)
T ss_dssp CSCEECHHHHHHHTCC-----------------TTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCCCccHHHHHHHhcc-----------------cCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 3456788888876421 24689999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCCCceeEEeecc
Q 011140 307 LDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 307 adGv~v~DkngnnaLHIApLe 327 (492)
++ +++.|.+|.|+||+|...
T Consensus 250 ad-~~~~d~~G~TpL~~A~~~ 269 (301)
T 2b0o_E 250 AL-VGTVNEAGETALDIARKK 269 (301)
T ss_dssp CC-CSCCCTTSCCHHHHHHHH
T ss_pred CC-CCCcCCCCCCHHHHHHHc
Confidence 99 999999999999998543
No 70
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=98.93 E-value=5.2e-11 Score=97.77 Aligned_cols=61 Identities=18% Similarity=0.281 Sum_probs=30.7
Q ss_pred hhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEe
Q 011140 263 SKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (492)
Q Consensus 263 ~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIA 324 (492)
.++|+.|++.|++++.+|..|+|+||+|++.|+.++++.|++.|++ ++..|.+|.|+||+|
T Consensus 48 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A 108 (126)
T 1n0r_A 48 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLA 108 (126)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred HHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCC-CcccCCCCCCHHHHH
Confidence 4455555555555555555555555555555555555555555554 444445555555444
No 71
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=98.93 E-value=1.3e-10 Score=96.01 Aligned_cols=71 Identities=13% Similarity=0.104 Sum_probs=63.2
Q ss_pred CCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCC
Q 011140 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (492)
Q Consensus 229 ~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Gad 308 (492)
.|.|+||+|+..+ +.++|+.|++.|++++.+|..|+|+||+|++.|+.++++.|++.|++
T Consensus 41 ~g~t~L~~A~~~~--------------------~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~ 100 (115)
T 2l6b_A 41 DGNTPLHLAAKNG--------------------HAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100 (115)
T ss_dssp SSCCTTHHHHTTT--------------------CHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSS
T ss_pred CCCCHHHHHHHcC--------------------cHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence 5678999977655 48999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCce
Q 011140 309 GIRMLDPNTSRT 320 (492)
Q Consensus 309 Gv~v~Dkngnna 320 (492)
++..+..+.++
T Consensus 101 -~n~~~~~~~~~ 111 (115)
T 2l6b_A 101 -VNARSWGSSHH 111 (115)
T ss_dssp -HHHHSCCCC--
T ss_pred -CCcCCcccccc
Confidence 88888888654
No 72
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=98.93 E-value=5e-11 Score=106.70 Aligned_cols=80 Identities=6% Similarity=-0.086 Sum_probs=73.6
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Ga 307 (492)
..|.|+||+|+..+. .++|+.|++.|++++.+|..|+|+||+|++.|+.++++.|++.|+
T Consensus 33 ~~g~t~L~~A~~~g~--------------------~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 92 (192)
T 2rfm_A 33 SYNRTPLMVACMLGM--------------------ENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGS 92 (192)
T ss_dssp TTCCCHHHHHHHHTC--------------------GGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCC
Confidence 357899999877654 899999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeEEeeccc
Q 011140 308 DGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 308 dGv~v~DkngnnaLHIApLe~ 328 (492)
+ ++..|..|.|+||+|....
T Consensus 93 ~-~~~~~~~g~t~L~~A~~~~ 112 (192)
T 2rfm_A 93 N-VNTKDFSGKTPLMWSIIFG 112 (192)
T ss_dssp C-TTCCCTTSCCHHHHHHHHT
T ss_pred C-CCCCCCCCCcHHHHHHHcC
Confidence 9 9999999999999998764
No 73
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=98.93 E-value=4.1e-11 Score=109.91 Aligned_cols=70 Identities=10% Similarity=0.096 Sum_probs=66.5
Q ss_pred ccCCCchhhhhhcccC-CcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeecc
Q 011140 257 SVGSGSSKIVRAVPKV-DTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 257 ~~~~G~~~iVr~Llka-gA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe 327 (492)
|+..|+.+||+.||+. |+++|.+|..|+||||+|++.|+.+++++|++.|++ +++.|.+|.|+||+|...
T Consensus 113 A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~ 183 (222)
T 3ehr_A 113 ACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNA 183 (222)
T ss_dssp HHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-SCCCCTTSCCHHHHCCSH
T ss_pred HHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CccccCCCCCHHHHhcch
Confidence 7888999999999999 999999999999999999999999999999999999 999999999999998544
No 74
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=98.92 E-value=5.5e-11 Score=103.88 Aligned_cols=79 Identities=13% Similarity=0.048 Sum_probs=67.0
Q ss_pred CCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCC
Q 011140 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (492)
Q Consensus 229 ~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Gad 308 (492)
.|.|+||+|+..+ +.++|+.|++.|++++.+|..+.|+||+|++.|+.++++.|++.|++
T Consensus 35 ~g~t~L~~A~~~~--------------------~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 94 (167)
T 3v31_A 35 EGFTPLMWAAAHG--------------------QIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD 94 (167)
T ss_dssp TSCCHHHHHHHTT--------------------CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHCC--------------------CHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Confidence 5678899977654 48889999999999998888899999999999988899999999988
Q ss_pred CCcccCCCCCceeEEeeccc
Q 011140 309 GIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 309 Gv~v~DkngnnaLHIApLe~ 328 (492)
++..|.+|.|+||+|....
T Consensus 95 -~~~~~~~g~t~L~~A~~~~ 113 (167)
T 3v31_A 95 -VNEYDWNGGTPLLYAVHGN 113 (167)
T ss_dssp -TTCCCTTSCCHHHHHHHTT
T ss_pred -CCcCCCCCCCHHHHHHHcC
Confidence 8888888999999887663
No 75
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=98.91 E-value=6.5e-11 Score=111.68 Aligned_cols=78 Identities=8% Similarity=-0.016 Sum_probs=61.1
Q ss_pred CCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCC
Q 011140 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (492)
Q Consensus 229 ~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Gad 308 (492)
+|.|+||+|+..+. .++|+.|++.|+++|.+|..|+|+||+|++.|+.++++.|++.|++
T Consensus 2 ~g~t~L~~A~~~g~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 61 (261)
T 2xai_A 2 SDWSPMHEAAIHGH--------------------QLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61 (261)
T ss_dssp --CCHHHHHHHHTC--------------------HHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHcCC--------------------HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 46788998776554 7888888888888888888888888888888888888888888888
Q ss_pred CCcccCCCCCceeEEeecc
Q 011140 309 GIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 309 Gv~v~DkngnnaLHIApLe 327 (492)
++..|.+|.|+||+|...
T Consensus 62 -~~~~~~~g~t~L~~A~~~ 79 (261)
T 2xai_A 62 -VNGVTADWHTPLFNACVS 79 (261)
T ss_dssp -TTCCCTTSCCHHHHHHHH
T ss_pred -CCCCCCCCCCHHHHHHHc
Confidence 777888888888887655
No 76
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=98.90 E-value=3.6e-11 Score=112.13 Aligned_cols=77 Identities=10% Similarity=0.087 Sum_probs=69.6
Q ss_pred CCCCCccccccccCCcccCCCCcccccccCCCchhhhhhccc---CCcccccccccccceEEEeec--cCCch-------
Q 011140 230 VPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPK---VDTHQDVKSGVQKFRVKLLAE--SGGQS------- 297 (492)
Q Consensus 230 ~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~Llk---agA~vn~kD~~gkTpLHlAa~--~G~~~------- 297 (492)
|.|+||+|+..+ +.+||+.||+ .||++|.+|..|+||||+|++ .++.+
T Consensus 136 g~tpL~~A~~~~--------------------~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~ 195 (256)
T 2etb_A 136 GELPLSLAACTK--------------------QWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIH 195 (256)
T ss_dssp CSSHHHHHHHTT--------------------CHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHH
T ss_pred CCCHHHHHHHcC--------------------CHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHH
Confidence 788999977655 4899999999 999999999999999999999 77777
Q ss_pred hhHHHHhcCCCCC-------cccCCCCCceeEEeecc
Q 011140 298 TMDVLCQIGLDGI-------RMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 298 iv~vLlq~GadGv-------~v~DkngnnaLHIApLe 327 (492)
++++|++.|++ + ++.|.+|.|+||+|...
T Consensus 196 iv~~Ll~~ga~-~~~~~~~~~~~d~~g~tpL~~A~~~ 231 (256)
T 2etb_A 196 MYDGLLQMGAR-LCPTVQLEEISNHQGLTPLKLAAKE 231 (256)
T ss_dssp HHHHHHHHHHH-HSTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHcCCC-cccccccccccCCCCCCHHHHHHHh
Confidence 99999999999 7 88999999999998554
No 77
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=98.90 E-value=1e-10 Score=119.53 Aligned_cols=66 Identities=11% Similarity=0.015 Sum_probs=53.6
Q ss_pred CchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeecc
Q 011140 261 GSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 261 G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe 327 (492)
|+.+||++||.+||++|.+|..|+||||+|+..|+.++|++||++|++ +++.|.+|.|+||+|...
T Consensus 246 g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~ 311 (368)
T 3jue_A 246 NSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMET 311 (368)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHC
Confidence 347888888888888888888888888888888888888888888888 778888888888887443
No 78
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=98.89 E-value=1.1e-10 Score=106.43 Aligned_cols=79 Identities=11% Similarity=0.044 Sum_probs=55.0
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Ga 307 (492)
..|.|+||+|+..+. .++|+.|++.|++++.+|..++|+||+|++.|+.++++.|++.|+
T Consensus 104 ~~g~t~L~~A~~~~~--------------------~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 163 (231)
T 3aji_A 104 QNGCTPLHYAASKNR--------------------HEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA 163 (231)
T ss_dssp TTSCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Confidence 346788998776543 667777777777777777777777777777777777777777777
Q ss_pred CCCcccCCCCCceeEEeecc
Q 011140 308 DGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 308 dGv~v~DkngnnaLHIApLe 327 (492)
+ ++..|.+|.|+||+|...
T Consensus 164 ~-~~~~~~~g~t~L~~A~~~ 182 (231)
T 3aji_A 164 S-TNIQDTEGNTPLHLACDE 182 (231)
T ss_dssp C-SCCCCTTSCCHHHHHHHT
T ss_pred C-ccccCCCCCCHHHHHHHC
Confidence 6 666677777777776555
No 79
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=98.89 E-value=7.6e-11 Score=96.80 Aligned_cols=79 Identities=14% Similarity=0.182 Sum_probs=71.0
Q ss_pred CCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCC
Q 011140 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (492)
Q Consensus 229 ~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Gad 308 (492)
.|.|+||+|+..+ +.++|+.|++.|++++.+|..++|+||+|++.|+.++++.|++.|++
T Consensus 1 ~g~t~L~~A~~~~--------------------~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 60 (126)
T 1n0r_A 1 NGRTPLHLAARNG--------------------HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60 (126)
T ss_dssp CCCCHHHHHHHHT--------------------CHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred CCccHHHHHHHcC--------------------cHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC
Confidence 3667888866554 49999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCceeEEeeccc
Q 011140 309 GIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 309 Gv~v~DkngnnaLHIApLe~ 328 (492)
++..|.+|.|+||+|....
T Consensus 61 -~~~~~~~g~t~l~~A~~~~ 79 (126)
T 1n0r_A 61 -VNAKDKNGRTPLHLAARNG 79 (126)
T ss_dssp -TTCCCTTSCCHHHHHHHTT
T ss_pred -CcccCCCCCcHHHHHHHcC
Confidence 8899999999999986653
No 80
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=98.89 E-value=1.2e-10 Score=111.26 Aligned_cols=80 Identities=13% Similarity=0.056 Sum_probs=71.2
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Ga 307 (492)
..|.|+||+|+..+ +.++|+.|++.|+++|.+|..|+||||+|++.|+.++++.|++.|+
T Consensus 56 ~~g~t~L~~A~~~g--------------------~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~ 115 (351)
T 3utm_A 56 GRKSTPLHLAAGYN--------------------RVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGA 115 (351)
T ss_dssp TTCCCHHHHHHHTT--------------------CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcC--------------------CHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCC
Confidence 45678899876654 4899999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeEEeeccc
Q 011140 308 DGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 308 dGv~v~DkngnnaLHIApLe~ 328 (492)
+ ++..|..|.|+||+|....
T Consensus 116 ~-~~~~~~~g~t~L~~A~~~~ 135 (351)
T 3utm_A 116 C-VNAMDLWQFTPLHEAASKN 135 (351)
T ss_dssp C-TTCCCTTCCCHHHHHHHTT
T ss_pred C-CCCCCCCCCCHHHHHHHcC
Confidence 9 8899999999999997663
No 81
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=98.88 E-value=1.3e-10 Score=116.66 Aligned_cols=79 Identities=9% Similarity=-0.006 Sum_probs=50.2
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Ga 307 (492)
..|.|+||+|+..+. .+||+.|++.|+++|.+|..|+|+||+|++.|+.++|+.|++.|+
T Consensus 276 ~~g~t~L~~A~~~~~--------------------~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga 335 (437)
T 1n11_A 276 KSGLTPLHLVAQEGH--------------------VPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA 335 (437)
T ss_dssp TTCCCHHHHHHHHTC--------------------HHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Confidence 457788998775543 556666666666666666666666666666666666666666666
Q ss_pred CCCcccCCCCCceeEEeecc
Q 011140 308 DGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 308 dGv~v~DkngnnaLHIApLe 327 (492)
+ ++..|..|.|+||+|...
T Consensus 336 d-~n~~~~~g~t~L~~A~~~ 354 (437)
T 1n11_A 336 D-VNAKTKLGYSPLHQAAQQ 354 (437)
T ss_dssp C-TTCCCTTSCCHHHHHHHT
T ss_pred C-CCCCCCCCCCHHHHHHHC
Confidence 6 556666666666666554
No 82
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=98.88 E-value=1.2e-10 Score=106.52 Aligned_cols=79 Identities=9% Similarity=0.037 Sum_probs=69.7
Q ss_pred CCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhh----HHHHh
Q 011140 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTM----DVLCQ 304 (492)
Q Consensus 229 ~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv----~vLlq 304 (492)
.|.|+||+|+..+ +.++|+.|++.|+++|.+|..|+||||+|++.|+.+++ +.|++
T Consensus 120 ~g~t~L~~A~~~~--------------------~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~ 179 (232)
T 2rfa_A 120 YGEHPLSFAACVG--------------------SEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLS 179 (232)
T ss_dssp CCSSHHHHHHHHT--------------------CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHcC--------------------CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHh
Confidence 5778899877655 48999999999999999999999999999999999887 99999
Q ss_pred cCCCCC-----cccCCCCCceeEEeecc
Q 011140 305 IGLDGI-----RMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 305 ~GadGv-----~v~DkngnnaLHIApLe 327 (492)
.|++.. ++.|.+|.|+||+|...
T Consensus 180 ~g~~~~~~~~~~~~~~~g~tpl~~A~~~ 207 (232)
T 2rfa_A 180 YDGGDHLKSLELVPNNQGLTPFKLAGVE 207 (232)
T ss_dssp TTCSCSSCCGGGCCCTTSCCHHHHHHHH
T ss_pred cCCchhhhhhhccCCCCCCCHHHHHHHc
Confidence 999832 58899999999998544
No 83
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=98.88 E-value=5.1e-11 Score=112.04 Aligned_cols=68 Identities=10% Similarity=0.043 Sum_probs=63.8
Q ss_pred cccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccC-CCCCceeEEe
Q 011140 256 SSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLD-PNTSRTLRIY 324 (492)
Q Consensus 256 ~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~D-kngnnaLHIA 324 (492)
.|+..|+.+||+.||+.|+++|.+|..|+||||+|++.|+.++++.|++.|++ ++..| .+|.|+||+|
T Consensus 60 ~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A 128 (229)
T 2vge_A 60 NAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAA-IFATTLSDGATAFEKC 128 (229)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCSSTTCCTGGGC
T ss_pred HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cccccCCCCCCHHHHH
Confidence 36778899999999999999999999999999999999999999999999999 87776 6999999998
No 84
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=98.88 E-value=1.1e-10 Score=114.63 Aligned_cols=70 Identities=9% Similarity=0.050 Sum_probs=51.3
Q ss_pred ccCCCchhhhhhcccCCcc-----cccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeecc
Q 011140 257 SVGSGSSKIVRAVPKVDTH-----QDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 257 ~~~~G~~~iVr~LlkagA~-----vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe 327 (492)
++..|+.++|+.||++|++ +|.+|..|.|+||+|++.|+.++|++|++.|++ +++.|.+|.|+||+|...
T Consensus 180 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~ 254 (364)
T 3ljn_A 180 AMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVRA 254 (364)
T ss_dssp HHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred HHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHh
Confidence 4555667777777777777 777777777777777777777777777777777 777777777777777555
No 85
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=98.88 E-value=1.1e-10 Score=109.35 Aligned_cols=80 Identities=11% Similarity=0.055 Sum_probs=73.6
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCc-ccccccccccceEEEeeccCCchhhHHHHhcC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDT-HQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA-~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~G 306 (492)
..|.|+||+|+..+. .++|+.|++.|+ +++.+|..|+|+||+|++.|+.++++.|++.|
T Consensus 88 ~~g~t~L~~A~~~~~--------------------~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 147 (253)
T 1yyh_A 88 NMGRTPLHAAVSADA--------------------QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH 147 (253)
T ss_dssp TTSCCHHHHHHHHTC--------------------HHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTT
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcC
Confidence 567899999876654 899999999998 99999999999999999999999999999999
Q ss_pred CCCCcccCCCCCceeEEeeccc
Q 011140 307 LDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 307 adGv~v~DkngnnaLHIApLe~ 328 (492)
++ ++..|.+|.|+||+|....
T Consensus 148 ~~-~~~~d~~g~t~L~~A~~~~ 168 (253)
T 1yyh_A 148 AD-VNAVDDLGKSALHWAAAVN 168 (253)
T ss_dssp CC-TTCBCTTSCBHHHHHHHHT
T ss_pred CC-CCCcCCCCCCHHHHHHHcC
Confidence 99 9999999999999998764
No 86
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=98.87 E-value=4.9e-11 Score=111.18 Aligned_cols=79 Identities=9% Similarity=0.019 Sum_probs=70.2
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhccc---CCcccccccccccceEEEeeccCC---------
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPK---VDTHQDVKSGVQKFRVKLLAESGG--------- 295 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~Llk---agA~vn~kD~~gkTpLHlAa~~G~--------- 295 (492)
..|.|+||+|+..+ +.+||+.||+ .|+++|.+|..|+||||+|++.|+
T Consensus 138 ~~g~tpL~~A~~~g--------------------~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~ 197 (260)
T 3jxi_A 138 YFGELPLSLAACTN--------------------QPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFV 197 (260)
T ss_dssp CSCSSHHHHHHHTT--------------------CHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHH
T ss_pred cCCCCHHHHHHHcC--------------------CHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHH
Confidence 45789999977655 4999999999 999999999999999999998887
Q ss_pred chhhHHHHhcCCCCC-------cccCCCCCceeEEeecc
Q 011140 296 QSTMDVLCQIGLDGI-------RMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 296 ~~iv~vLlq~GadGv-------~v~DkngnnaLHIApLe 327 (492)
.++++.|++.|++ + ++.|.+|.|+||+|...
T Consensus 198 ~~~v~~Ll~~ga~-~~~~~~~~~~~d~~g~tpL~~A~~~ 235 (260)
T 3jxi_A 198 TKMYDLLLIKCAK-LFPDTNLEALLNNDGLSPLMMAAKT 235 (260)
T ss_dssp HHHHHHHHHHHHH-HCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHHHhCcc-cccccchhhcccCCCCCHHHHHHHc
Confidence 5899999999999 6 67999999999998554
No 87
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=98.87 E-value=1.2e-10 Score=105.76 Aligned_cols=80 Identities=9% Similarity=-0.049 Sum_probs=74.0
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCC--cccccccccccceEEEeeccCCchhhHHHHhc
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVD--THQDVKSGVQKFRVKLLAESGGQSTMDVLCQI 305 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~Llkag--A~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~ 305 (492)
..|.|+||+|+..+. .++|+.|++.| ++++.+|..|.|+||+|++.|+.++++.|++.
T Consensus 70 ~~g~t~L~~A~~~~~--------------------~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 129 (228)
T 2dzn_A 70 DSGWTPFHIACSVGN--------------------LEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN 129 (228)
T ss_dssp TTSCCHHHHHHHHCC--------------------HHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHc
Confidence 467899999987764 89999999999 89999999999999999999999999999999
Q ss_pred CCCCCcccCCCCCceeEEeeccc
Q 011140 306 GLDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 306 GadGv~v~DkngnnaLHIApLe~ 328 (492)
|++ ++..|.+|.|+||+|....
T Consensus 130 g~~-~~~~~~~g~t~L~~A~~~~ 151 (228)
T 2dzn_A 130 GAS-VRIKDKFNQIPLHRAASVG 151 (228)
T ss_dssp TCC-SCCCCTTSCCHHHHHHHTT
T ss_pred CCC-ccccCCCCCCHHHHHHHcC
Confidence 999 9999999999999998764
No 88
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=98.87 E-value=1.3e-10 Score=105.39 Aligned_cols=80 Identities=10% Similarity=0.003 Sum_probs=66.8
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Ga 307 (492)
..|.|+||+|+..+. .++|+.|++.|+++|.+|..|+|+||+|++.|+.++++.|++.|+
T Consensus 90 ~~g~t~L~~A~~~~~--------------------~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 149 (223)
T 2f8y_A 90 HDGTTPLILAARLAV--------------------EGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 149 (223)
T ss_dssp TTCCCHHHHHHHHTC--------------------HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCcHHHHHHHhCc--------------------HHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 456789999876554 788888888888888888888888888888888888888888888
Q ss_pred CCCcccCCCCCceeEEeeccc
Q 011140 308 DGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 308 dGv~v~DkngnnaLHIApLe~ 328 (492)
+ ++..|.+|.|+||+|....
T Consensus 150 ~-~~~~~~~g~t~L~~A~~~~ 169 (223)
T 2f8y_A 150 N-KDMQNNREETPLFLAAREG 169 (223)
T ss_dssp C-TTCCCTTCCCHHHHHHHHT
T ss_pred C-CCCcCCCCcCHHHHHHHcC
Confidence 8 8888888888888887653
No 89
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=98.87 E-value=7.1e-11 Score=105.92 Aligned_cols=69 Identities=13% Similarity=0.154 Sum_probs=62.5
Q ss_pred cCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccC-CCCCceeEEeeccc
Q 011140 258 VGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLD-PNTSRTLRIYPLEN 328 (492)
Q Consensus 258 ~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~D-kngnnaLHIApLe~ 328 (492)
+..|+.++|+.||+ |+++|.+|..|+||||+|++.|+.++++.|++.|++ ++..| .+|+|+||+|....
T Consensus 52 ~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A~~~~ 121 (183)
T 3deo_A 52 ARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMAAGYV 121 (183)
T ss_dssp HHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSSSSCCHHHHHHHTT
T ss_pred HHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHHHHhcC
Confidence 33445999999999 999999999999999999999999999999999999 88888 99999999997653
No 90
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=98.87 E-value=1.5e-10 Score=109.56 Aligned_cols=67 Identities=12% Similarity=0.123 Sum_probs=55.0
Q ss_pred CCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeecc
Q 011140 260 SGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 260 ~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe 327 (492)
.|+.++|+.||+.|+++|.+|..|+||||+|++.|+.++++.|++.|++ ++..|.+|.|+||+|...
T Consensus 83 ~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~ 149 (299)
T 1s70_B 83 DDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEE 149 (299)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSH
T ss_pred cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHhc
Confidence 3458888888888888888888888888888888888888888888888 778888888888887554
No 91
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=98.86 E-value=2e-10 Score=92.08 Aligned_cols=61 Identities=11% Similarity=0.125 Sum_probs=55.5
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Ga 307 (492)
..|.|+||+|+..+ +.+||+.|++.|+++|.+|..|+||||+|++.|+.++++.|++.||
T Consensus 33 ~~g~t~L~~A~~~~--------------------~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 33 KNGRTPLHLAARNG--------------------HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92 (93)
T ss_dssp TTSCCHHHHHHHTT--------------------CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcC--------------------CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 35678999977655 4899999999999999999999999999999999999999999998
Q ss_pred C
Q 011140 308 D 308 (492)
Q Consensus 308 d 308 (492)
+
T Consensus 93 ~ 93 (93)
T 1n0q_A 93 Y 93 (93)
T ss_dssp C
T ss_pred C
Confidence 6
No 92
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=98.85 E-value=1.1e-10 Score=110.04 Aligned_cols=70 Identities=13% Similarity=0.157 Sum_probs=63.5
Q ss_pred ccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccC-CCCCceeEEeeccc
Q 011140 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLD-PNTSRTLRIYPLEN 328 (492)
Q Consensus 257 ~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~D-kngnnaLHIApLe~ 328 (492)
++..|+.++|+.||+ |+++|.+|..|+||||+|+..|+.++|+.|++.|++ ++..| ..|.|+||+|....
T Consensus 52 A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~g~t~L~~A~~~g 122 (244)
T 3ui2_A 52 AARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMAAGYV 122 (244)
T ss_dssp HHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHHHHHcC
Confidence 344456999999999 999999999999999999999999999999999999 88888 88999999997664
No 93
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=98.84 E-value=1.2e-10 Score=106.56 Aligned_cols=80 Identities=10% Similarity=0.023 Sum_probs=72.5
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCC-cccccccccccceEEEeeccCCchhhHHHHhcC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVD-THQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~Llkag-A~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~G 306 (492)
..|.|+||+|+..+ +.++|+.|++.| ++++.+|..|+|+||+|++.|+.++++.|++.|
T Consensus 75 ~~g~t~L~~A~~~~--------------------~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 134 (237)
T 3b7b_A 75 AEGSTCLHLAAKKG--------------------HYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG 134 (237)
T ss_dssp TTSCCHHHHHHHTT--------------------CHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCCCcHHHHHHHcC--------------------CHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 35678999977655 489999999999 899999999999999999999999999999999
Q ss_pred CCCCcccCCCCCceeEEeeccc
Q 011140 307 LDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 307 adGv~v~DkngnnaLHIApLe~ 328 (492)
++ ++..|.+|.++||+|....
T Consensus 135 ~~-~~~~~~~g~t~L~~A~~~~ 155 (237)
T 3b7b_A 135 SD-INIRDNEENICLHWAAFSG 155 (237)
T ss_dssp CC-TTCCCTTSCCHHHHHHHHC
T ss_pred CC-CCccCCCCCCHHHHHHHCC
Confidence 99 8899999999999997664
No 94
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=98.84 E-value=1.9e-10 Score=108.49 Aligned_cols=79 Identities=11% Similarity=0.073 Sum_probs=42.1
Q ss_pred cCCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcC
Q 011140 227 RGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (492)
Q Consensus 227 ~g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~G 306 (492)
+..|.|+||+|+..+. .++|+.|++.|+++|.+|..|+|+||+|++.|+.++++.|++.|
T Consensus 98 ~~~g~t~L~~A~~~~~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 157 (261)
T 2xai_A 98 ESDLASPIHEAARRGH--------------------VECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 157 (261)
T ss_dssp SCTTCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHcCc--------------------HHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 3447788888776543 44555555555555555555555555555555555555555555
Q ss_pred CCCCcccCCCCCceeEEeecc
Q 011140 307 LDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 307 adGv~v~DkngnnaLHIApLe 327 (492)
++ ++ .|.+|.|+||+|...
T Consensus 158 ~~-~~-~~~~g~t~Lh~A~~~ 176 (261)
T 2xai_A 158 AD-VN-QGKGQDSPLHAVART 176 (261)
T ss_dssp CC-TT-CCBTTBCHHHHHHHH
T ss_pred CC-CC-CCCCCCChHHHHHHc
Confidence 54 33 244455555554433
No 95
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=98.84 E-value=1.6e-10 Score=113.53 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=48.0
Q ss_pred ccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeec
Q 011140 275 HQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPL 326 (492)
Q Consensus 275 ~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApL 326 (492)
++|.+|..|+||||+|++.|+.++|++|++.|++ +++.|.+|.|+||+|..
T Consensus 275 ~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad-~~~~d~~G~TpL~~A~~ 325 (327)
T 1sw6_A 275 MLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD-PFIANKSGLRPVDFGAG 325 (327)
T ss_dssp TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC-TTCCCTTSCCGGGGTCC
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHh
Confidence 5888899999999999999999999999999999 99999999999999843
No 96
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=98.83 E-value=1.8e-10 Score=112.98 Aligned_cols=83 Identities=7% Similarity=0.002 Sum_probs=72.8
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Ga 307 (492)
..|.|+||+|+..+. .+.+||+.||+.|+++|.+|..|+|+||+|++.|+.++|+.|++.|+
T Consensus 136 ~~g~t~L~~A~~~g~------------------~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 197 (364)
T 3ljn_A 136 CKGQTALHWCVGLGP------------------EYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVP 197 (364)
T ss_dssp ESCCCHHHHHHHSCG------------------GGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHcCC------------------chHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 357789999776550 04899999999999999999999999999999999999999999998
Q ss_pred CC----CcccCCCCCceeEEeeccc
Q 011140 308 DG----IRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 308 dG----v~v~DkngnnaLHIApLe~ 328 (492)
+. ++..|..|+|+||+|....
T Consensus 198 ~~~~~~~~~~~~~g~t~L~~A~~~g 222 (364)
T 3ljn_A 198 SKSSLRLDYANKQGNSHLHWAILIN 222 (364)
T ss_dssp CSSSCCTTCCCTTCCCTTHHHHTTT
T ss_pred ccccccccccCCCCCcHHHHHHHcC
Confidence 74 6788999999999997764
No 97
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=98.82 E-value=2.9e-10 Score=109.24 Aligned_cols=83 Identities=8% Similarity=0.005 Sum_probs=73.1
Q ss_pred cCcCCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHh
Q 011140 225 GARGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQ 304 (492)
Q Consensus 225 ~~~g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq 304 (492)
+-...|.|+||+|+..+ +.++|+.||+.|+++|.+|..|+|+||+|++.|+.++++.|++
T Consensus 54 ~~~~~g~t~L~~Aa~~g--------------------~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 113 (285)
T 3d9h_A 54 GDAVSDWSPMHEAAIHG--------------------HQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLK 113 (285)
T ss_dssp SSSCCSCCHHHHHHHTT--------------------CHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHcC--------------------CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHH
Confidence 34456778899876655 4899999999999999999999999999999999999999999
Q ss_pred cCCCCCcccCCCCCceeEEeeccc
Q 011140 305 IGLDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 305 ~GadGv~v~DkngnnaLHIApLe~ 328 (492)
.|++ ++..|.+|.|+||+|....
T Consensus 114 ~ga~-~~~~~~~g~t~L~~A~~~~ 136 (285)
T 3d9h_A 114 HGAQ-VNGVTADWHTPLFNACVSG 136 (285)
T ss_dssp TTCC-SSCCCTTCCCHHHHHHHHT
T ss_pred CCCC-CCCCCCCCCCHHHHHHHcC
Confidence 9999 8899999999999987653
No 98
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=98.82 E-value=9.2e-11 Score=110.61 Aligned_cols=78 Identities=10% Similarity=0.090 Sum_probs=69.5
Q ss_pred CCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhccc---CCcccccccccccceEEEeeccCC---------c
Q 011140 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPK---VDTHQDVKSGVQKFRVKLLAESGG---------Q 296 (492)
Q Consensus 229 ~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~Llk---agA~vn~kD~~gkTpLHlAa~~G~---------~ 296 (492)
.|.|+||+|+..+ +.+||+.||+ .|+++|.+|..|+||||+|++.|+ .
T Consensus 147 ~g~tpL~~A~~~g--------------------~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~ 206 (273)
T 2pnn_A 147 FGELPLSLAACTN--------------------QLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVT 206 (273)
T ss_dssp SCBSHHHHHHHTT--------------------CHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHH
T ss_pred CCCCHHHHHHHcC--------------------CHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHH
Confidence 5788999977655 4899999999 999999999999999999999998 6
Q ss_pred hhhHHHHhcCCCCCc-------ccCCCCCceeEEeecc
Q 011140 297 STMDVLCQIGLDGIR-------MLDPNTSRTLRIYPLE 327 (492)
Q Consensus 297 ~iv~vLlq~GadGv~-------v~DkngnnaLHIApLe 327 (492)
++++.|++.|++ ++ +.|.+|.|+||+|...
T Consensus 207 ~~v~~Ll~~ga~-~n~~~~~~~~~d~~g~TpL~~A~~~ 243 (273)
T 2pnn_A 207 SMYNEILILGAK-LHPTLKLEEITNRKGLTPLALAASS 243 (273)
T ss_dssp HHHHHHHHHHHH-HCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHHhhhh-cccccccccccCCCCCCHHHHHHHh
Confidence 899999999999 64 5899999999998544
No 99
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=98.81 E-value=3.8e-10 Score=100.65 Aligned_cols=78 Identities=12% Similarity=-0.027 Sum_probs=51.8
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcc-cCCcccccccccccceEEEeeccCCchhhHHHHhcC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVP-KVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~Ll-kagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~G 306 (492)
..|.|+||+|+..+. .+||+.|+ ..+++++.+|..|+|+||+|++.|+.++++.|++.|
T Consensus 70 ~~g~t~l~~A~~~~~--------------------~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 129 (201)
T 3hra_A 70 SISDSPYLYAGAQGR--------------------TEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG 129 (201)
T ss_dssp TTSCCHHHHHHHTTC--------------------HHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 346678888765443 66666666 555566666666677777777777666777777766
Q ss_pred -CCCCcccCCCCCceeEEeec
Q 011140 307 -LDGIRMLDPNTSRTLRIYPL 326 (492)
Q Consensus 307 -adGv~v~DkngnnaLHIApL 326 (492)
++ ++..|..|.|+||+|..
T Consensus 130 ~~~-~~~~~~~g~t~L~~A~~ 149 (201)
T 3hra_A 130 RED-IDFQNDFGYTALIEAVG 149 (201)
T ss_dssp CCC-TTCCCTTSCCHHHHHHH
T ss_pred CCC-cCCCCCCCCCHHHHHHH
Confidence 55 66666667777776653
No 100
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=98.81 E-value=2.7e-10 Score=103.22 Aligned_cols=80 Identities=11% Similarity=0.069 Sum_probs=72.9
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCc-ccccccccccceEEEeeccCCchhhHHHHhcC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDT-HQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA-~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~G 306 (492)
..|.|+||+|+..+ +.++|+.|++.++ +++.+|..++|+||+|++.|+.++++.|++.|
T Consensus 56 ~~g~t~L~~A~~~~--------------------~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 115 (223)
T 2f8y_A 56 NMGRTPLHAAVSAD--------------------AQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH 115 (223)
T ss_dssp TTSCCHHHHHHHTT--------------------CHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHcC--------------------CHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcC
Confidence 45789999977654 4899999999998 89999999999999999999999999999999
Q ss_pred CCCCcccCCCCCceeEEeeccc
Q 011140 307 LDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 307 adGv~v~DkngnnaLHIApLe~ 328 (492)
++ ++..|.+|.|+||+|....
T Consensus 116 ~~-~~~~~~~g~t~L~~A~~~~ 136 (223)
T 2f8y_A 116 AD-VNAVDDLGKSALHWAAAVN 136 (223)
T ss_dssp CC-TTCBCTTSCBHHHHHHHTT
T ss_pred CC-CcCcCCCCCcHHHHHHHcC
Confidence 99 9999999999999998764
No 101
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=98.81 E-value=3.1e-10 Score=113.37 Aligned_cols=68 Identities=16% Similarity=0.182 Sum_probs=62.7
Q ss_pred CCCchhhhhhcccCC-cccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeecc
Q 011140 259 GSGSSKIVRAVPKVD-THQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 259 ~~G~~~iVr~Llkag-A~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe 327 (492)
..|+.+||+.||+.+ +++|.+|..|+||||+|++.|+.++|+.|++.|++ +++.|.+|.|+||+|...
T Consensus 288 ~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad-~~~~d~~g~t~l~~A~~~ 356 (373)
T 2fo1_E 288 QVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQAN 356 (373)
T ss_dssp SSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCSSSCCHHHHHHHT
T ss_pred HhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccCCCCCCCCHHHHHHHc
Confidence 344599999999876 99999999999999999999999999999999999 999999999999998554
No 102
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=98.79 E-value=4.4e-10 Score=107.97 Aligned_cols=79 Identities=11% Similarity=0.064 Sum_probs=53.0
Q ss_pred cCCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcC
Q 011140 227 RGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (492)
Q Consensus 227 ~g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~G 306 (492)
...|.|+||+|+..+. .++|+.|++.|+++|.+|..|+|+||+|++.|+.++++.|++.|
T Consensus 154 ~~~g~t~L~~A~~~g~--------------------~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g 213 (285)
T 3d9h_A 154 ESDLASPIHEAARRGH--------------------VECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213 (285)
T ss_dssp SCTTSCHHHHHHHHTC--------------------HHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHcCC--------------------HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCC
Confidence 4457899999877654 66666666666666666666666666666666666666666666
Q ss_pred CCCCcccCCCCCceeEEeecc
Q 011140 307 LDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 307 adGv~v~DkngnnaLHIApLe 327 (492)
++ ++ .|..|.|+||+|...
T Consensus 214 a~-~~-~~~~g~t~L~~A~~~ 232 (285)
T 3d9h_A 214 AD-VN-QGKGQDSPLHAVVRT 232 (285)
T ss_dssp CC-TT-CCBTTBCHHHHHHHT
T ss_pred CC-CC-CCCCCCCHHHHHHHc
Confidence 66 44 366666666666555
No 103
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=98.79 E-value=3.7e-10 Score=108.72 Aligned_cols=98 Identities=9% Similarity=0.042 Sum_probs=48.8
Q ss_pred CCCCCCCcccccccc----------CCcccCCCCcc-cccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCc
Q 011140 228 GTVPKSSNSTLFDDY----------GRSISFPSAKD-SRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQ 296 (492)
Q Consensus 228 g~~~~~~~~a~~~d~----------~~~i~~~s~~~-~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~ 296 (492)
..|.|+||+|+..+. |-.+....+.. =-.|+..|+.++|+.|++.|+++|.+|..|+||||+|++.|+.
T Consensus 29 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~ 108 (285)
T 3kea_A 29 VHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNM 108 (285)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCH
Confidence 457789999876543 11111110000 0024444555555555555555555555555555555555555
Q ss_pred hhhHHHHhcCCCCCcccCCCC-CceeEEeec
Q 011140 297 STMDVLCQIGLDGIRMLDPNT-SRTLRIYPL 326 (492)
Q Consensus 297 ~iv~vLlq~GadGv~v~Dkng-nnaLHIApL 326 (492)
++++.|++.|++ ++..|..| .|+||+|..
T Consensus 109 ~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~ 138 (285)
T 3kea_A 109 QTVKLFVKKNWR-LMFYGKTGWKTSFYHAVM 138 (285)
T ss_dssp HHHHHHHHHCGG-GGGCSSSGGGSHHHHHHH
T ss_pred HHHHHHHhcCCC-CCccCCCCCCCHHHHHHH
Confidence 555555555555 44555555 455555543
No 104
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=98.79 E-value=2.7e-10 Score=109.64 Aligned_cols=68 Identities=13% Similarity=-0.031 Sum_probs=52.8
Q ss_pred ccCCCchhhhhhcccCCcccccccccc-cceEEEeeccCCchhhHHHHhcCCCCCcccCC-CCCceeEEeecc
Q 011140 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQ-KFRVKLLAESGGQSTMDVLCQIGLDGIRMLDP-NTSRTLRIYPLE 327 (492)
Q Consensus 257 ~~~~G~~~iVr~LlkagA~vn~kD~~g-kTpLHlAa~~G~~~iv~vLlq~GadGv~v~Dk-ngnnaLHIApLe 327 (492)
|+..|+.++|+.|++.|++++.+|..| +||||+|++.|+.++++.|++.|++ . .|. .|.|+||+|...
T Consensus 102 A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~-~--~~~~~g~t~L~~A~~~ 171 (285)
T 3kea_A 102 AVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS-T--FDLAILLSCIHITIKN 171 (285)
T ss_dssp HHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCT-T--CCCSTHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCc-c--ccccCCccHHHHHHHc
Confidence 566778888888888888888888877 7888888888888888888888877 2 333 777888887655
No 105
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=98.77 E-value=4.3e-10 Score=102.57 Aligned_cols=70 Identities=14% Similarity=0.092 Sum_probs=60.7
Q ss_pred ccCCCchhhhhhcccCCccccccc-ccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeecc
Q 011140 257 SVGSGSSKIVRAVPKVDTHQDVKS-GVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 257 ~~~~G~~~iVr~LlkagA~vn~kD-~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe 327 (492)
++..|+.++|+.|++.|++++.++ ..|+|+||+|++.|+.++++.|++.|++ ++..|.+|.|+||+|...
T Consensus 123 A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 193 (241)
T 1k1a_A 123 AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGR 193 (241)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHc
Confidence 445567899999999999999888 7899999999999999999999999999 888899999999998554
No 106
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=98.75 E-value=4.8e-10 Score=112.50 Aligned_cols=101 Identities=12% Similarity=0.117 Sum_probs=73.5
Q ss_pred cCCCCCCCcccccccc----------CCcccCCCCccc---ccccCCCchhhhhhcccCCcccccccccccceEEEeecc
Q 011140 227 RGTVPKSSNSTLFDDY----------GRSISFPSAKDS---RSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAES 293 (492)
Q Consensus 227 ~g~~~~~~~~a~~~d~----------~~~i~~~s~~~~---~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~ 293 (492)
...|.|+||+|++.+. |..+........ -.|+..|+.+||+.|++.|+++|.+|..|+|+||+|++.
T Consensus 11 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 90 (437)
T 1n11_A 11 GESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARI 90 (437)
T ss_dssp ----CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHC
Confidence 3567899999987653 222222111100 036777888888888888888888888888889988888
Q ss_pred CCchhhHHHHhcCCCCCcccCCCCCceeEEeeccc
Q 011140 294 GGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 294 G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe~ 328 (492)
|+.++|+.|++.|++ ++..|..|.++||+|....
T Consensus 91 g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g 124 (437)
T 1n11_A 91 GHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREG 124 (437)
T ss_dssp TCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHHT
T ss_pred CCHHHHHHHHhCCCC-CCCCCCCCCcHHHHHHHcC
Confidence 888888888888888 7788888888888887663
No 107
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=98.75 E-value=5.4e-10 Score=101.79 Aligned_cols=80 Identities=10% Similarity=0.007 Sum_probs=73.3
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Ga 307 (492)
..|.|+||+|+..+ +.++|+.|++.|++++.+|..|.|+||+|++.|+.++++.|++.|+
T Consensus 71 ~~g~t~L~~A~~~~--------------------~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 130 (231)
T 3aji_A 71 DAGWSPLHIAASAG--------------------XDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130 (231)
T ss_dssp TTSCCHHHHHHHHT--------------------CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcC--------------------HHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 45789999977655 4899999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeEEeeccc
Q 011140 308 DGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 308 dGv~v~DkngnnaLHIApLe~ 328 (492)
+ ++..|..|.++||+|....
T Consensus 131 ~-~~~~~~~g~t~L~~A~~~~ 150 (231)
T 3aji_A 131 N-PDAKDHYDATAMHRAAAKG 150 (231)
T ss_dssp C-TTCCCTTSCCHHHHHHHHT
T ss_pred C-CCCcCCCCCcHHHHHHHcC
Confidence 9 8899999999999998764
No 108
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=98.75 E-value=5.8e-10 Score=99.48 Aligned_cols=79 Identities=8% Similarity=0.077 Sum_probs=65.5
Q ss_pred CCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHh-cCC
Q 011140 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQ-IGL 307 (492)
Q Consensus 229 ~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq-~Ga 307 (492)
.|.|+||+|+..+ +.++|+.|++.|+++|.+|..++|+||+|++.|+.++++.|++ .|+
T Consensus 38 ~g~t~L~~A~~~~--------------------~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~ 97 (201)
T 3hra_A 38 EGNTPLNIAVHNN--------------------DIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATP 97 (201)
T ss_dssp TSCCHHHHHHHHT--------------------CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHcC--------------------CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCc
Confidence 4567888866554 4899999999999999999999999999999999999999994 555
Q ss_pred CCCcccCCCCCceeEEeeccc
Q 011140 308 DGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 308 dGv~v~DkngnnaLHIApLe~ 328 (492)
+ ++..|..|.++||+|....
T Consensus 98 ~-~~~~~~~g~t~L~~A~~~~ 117 (201)
T 3hra_A 98 D-LNKHNRYGGNALIPAAEKG 117 (201)
T ss_dssp C-TTCCCTTSCCSHHHHHHTT
T ss_pred c-cccccCCCCcHHHHHHHcC
Confidence 6 8888999999999986653
No 109
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=98.74 E-value=6e-10 Score=106.97 Aligned_cols=69 Identities=13% Similarity=0.083 Sum_probs=63.5
Q ss_pred CCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeeccc
Q 011140 259 GSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 259 ~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe~ 328 (492)
..++.++|+.|++.|+..+..|..|+||||+|++.|+.++|+.|++.|++ +++.|.+|.|+||+|....
T Consensus 159 ~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~A~~~g 227 (276)
T 4hbd_A 159 TQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHG 227 (276)
T ss_dssp SHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHT
T ss_pred hhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCC
Confidence 55678999999999999999999999999999999999999999999999 9999999999999996653
No 110
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=98.73 E-value=9.8e-10 Score=107.98 Aligned_cols=68 Identities=12% Similarity=0.021 Sum_probs=63.2
Q ss_pred CCCchhhhhhcccCCccccc-ccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeecc
Q 011140 259 GSGSSKIVRAVPKVDTHQDV-KSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 259 ~~G~~~iVr~LlkagA~vn~-kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe 327 (492)
..+..+|+++|+..|+++|. +|..|+||||+|++.|+.++|+.|++.|++ ++..|.+|.|+||+|...
T Consensus 106 ~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad-~n~~d~~g~TpLh~A~~~ 174 (327)
T 1sw6_A 106 DSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKS 174 (327)
T ss_dssp HHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTBCCTTCCCHHHHHHHS
T ss_pred HhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHh
Confidence 33458999999999999999 899999999999999999999999999999 999999999999999774
No 111
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=98.73 E-value=7.2e-10 Score=102.52 Aligned_cols=79 Identities=10% Similarity=0.008 Sum_probs=70.7
Q ss_pred CCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCC
Q 011140 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (492)
Q Consensus 229 ~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Gad 308 (492)
.|.|+||+|+..+ +.+||+.|++.|++++.+|..|+|+||+|++.|+.++++.|++.|++
T Consensus 38 ~g~t~L~~A~~~g--------------------~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 97 (285)
T 1wdy_A 38 GGWTPLHNAVQMS--------------------REDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD 97 (285)
T ss_dssp TCCCHHHHHHHTT--------------------CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred CCCcHHHHHHHcC--------------------CHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 4567888866544 58999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCceeEEeeccc
Q 011140 309 GIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 309 Gv~v~DkngnnaLHIApLe~ 328 (492)
++..|..|.++||+|....
T Consensus 98 -~~~~~~~g~t~L~~A~~~~ 116 (285)
T 1wdy_A 98 -VNECDFYGFTAFMEAAVYG 116 (285)
T ss_dssp -TTCBCTTCCBHHHHHHHTT
T ss_pred -CCccCcccCCHHHHHHHhC
Confidence 8899999999999987664
No 112
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=98.72 E-value=9.1e-10 Score=101.37 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=60.1
Q ss_pred cCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCC-----CcccCCCCCceeEEeeccc
Q 011140 258 VGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDG-----IRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 258 ~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadG-----v~v~DkngnnaLHIApLe~ 328 (492)
+..|+.+||+.||+.|++++.+|..|+|+||+|++.|+.++++.|++.|++. ++..|.+|.++||+|....
T Consensus 53 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~ 128 (236)
T 1ikn_D 53 VITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 128 (236)
T ss_dssp HHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcC
Confidence 3445589999999999999999999999999999999999999999998752 4567888999999987654
No 113
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=98.72 E-value=8.1e-10 Score=107.26 Aligned_cols=67 Identities=9% Similarity=0.095 Sum_probs=56.7
Q ss_pred ccCCCchhhhhhcccCCcccccccc-cccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEe
Q 011140 257 SVGSGSSKIVRAVPKVDTHQDVKSG-VQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (492)
Q Consensus 257 ~~~~G~~~iVr~LlkagA~vn~kD~-~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIA 324 (492)
||..|+.+||+.||++||++|.+|. .|+||||+|++.|+.++|++||+.|++ ++..|..+.++++.+
T Consensus 32 Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~-~~~~~~~~~~~~~~~ 99 (337)
T 4g8k_A 32 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFILA 99 (337)
T ss_dssp HHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc-hhhhccCCCchhHHH
Confidence 5666779999999999999999976 599999999999999999999999998 666666555555544
No 114
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=98.71 E-value=9e-10 Score=109.96 Aligned_cols=71 Identities=8% Similarity=0.062 Sum_probs=62.1
Q ss_pred ccCCCchhhhhhcc--------cCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeeccc
Q 011140 257 SVGSGSSKIVRAVP--------KVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 257 ~~~~G~~~iVr~Ll--------kagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe~ 328 (492)
|+..|+.++|+.|+ +.|+++|.+|..|+||||+|++.|+.++|+.|++.|++ ++..|.+|.|+||+|....
T Consensus 132 Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g 210 (373)
T 2fo1_E 132 IASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD-PTIYNKSERSALHQAAANR 210 (373)
T ss_dssp HHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCC-CcccCCCCCCHHHHHHHCC
Confidence 55566677777776 89999999999999999999999999999999999999 8899999999999997663
No 115
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=98.69 E-value=8.2e-10 Score=108.61 Aligned_cols=72 Identities=6% Similarity=-0.037 Sum_probs=62.2
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Ga 307 (492)
..|.|+||+|+..+. .+||++||++||+++.+|..|+||||+|++.|+.+++++|++.|+
T Consensus 224 ~~G~TpLh~A~~~g~--------------------~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga 283 (301)
T 2b0o_E 224 ADGNTALHYAALYNQ--------------------PDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQA 283 (301)
T ss_dssp TTCCCHHHHHHHTTC--------------------HHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC
Confidence 467888999776554 899999999999999999999999999999999999999999998
Q ss_pred CCCcccCCCCCceeEEeec
Q 011140 308 DGIRMLDPNTSRTLRIYPL 326 (492)
Q Consensus 308 dGv~v~DkngnnaLHIApL 326 (492)
+ .+.|+||+|..
T Consensus 284 ~-------~g~tpLh~A~~ 295 (301)
T 2b0o_E 284 G-------TFAFPLHVDYS 295 (301)
T ss_dssp H-------TTSSCCC----
T ss_pred C-------CCCChhHHHHh
Confidence 8 57899999853
No 116
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=98.67 E-value=1.5e-09 Score=100.36 Aligned_cols=62 Identities=15% Similarity=0.112 Sum_probs=39.1
Q ss_pred hhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHh-cCCCCCcccCCCCCceeEEee
Q 011140 263 SKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQ-IGLDGIRMLDPNTSRTLRIYP 325 (492)
Q Consensus 263 ~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq-~GadGv~v~DkngnnaLHIAp 325 (492)
.+|++.|++.|+++|.+|..|+||||+|++.|+.++++.|++ .|++ ++..|.+|.|+||+|.
T Consensus 199 ~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~~~~g~t~l~~A~ 261 (285)
T 1wdy_A 199 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAV 261 (285)
T ss_dssp HHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC-TTCCCTTSCCHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCC-ccccCCCCCcHHHHHH
Confidence 556666666666666666666666666666666666666666 5666 5566666666666653
No 117
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=98.60 E-value=2.7e-09 Score=103.54 Aligned_cols=66 Identities=14% Similarity=0.081 Sum_probs=60.3
Q ss_pred chhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhc-CCCCCcccCCCCCceeEEeeccc
Q 011140 262 SSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQI-GLDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 262 ~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~-GadGv~v~DkngnnaLHIApLe~ 328 (492)
.+.||++|+++||++|.+|..|+||||+|++.|+.++++.|++. |++ ++..|.+|.|+||+|....
T Consensus 218 ~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~-vn~~d~~G~TpL~~A~~~g 284 (337)
T 4g8k_A 218 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELK 284 (337)
T ss_dssp HHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCC-TTCBCTTSCBHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCc-ccCcCCCCCCHHHHHHHcC
Confidence 45799999999999999999999999999999999999999985 788 9999999999999996653
No 118
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=98.59 E-value=2.8e-09 Score=96.35 Aligned_cols=79 Identities=11% Similarity=0.002 Sum_probs=44.8
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCC-chhhHHHHhcC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGG-QSTMDVLCQIG 306 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~-~~iv~vLlq~G 306 (492)
..|.++||+|+..+. .++|+.|++.|++++.+|..|+|+||+|+..++ ..++++|++.|
T Consensus 107 ~~g~t~l~~A~~~~~--------------------~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~ 166 (240)
T 3eu9_A 107 GEGCSCIHLAAQFGH--------------------TSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFN 166 (240)
T ss_dssp TTSCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTT
T ss_pred CCCCCHHHHHHHcCH--------------------HHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcC
Confidence 445677877665432 555566666666555555555566665554444 45555555555
Q ss_pred CCCCcccCC-CCCceeEEeecc
Q 011140 307 LDGIRMLDP-NTSRTLRIYPLE 327 (492)
Q Consensus 307 adGv~v~Dk-ngnnaLHIApLe 327 (492)
++ ++..+. .|.|+||+|...
T Consensus 167 ~~-~~~~~~~~g~t~L~~A~~~ 187 (240)
T 3eu9_A 167 VS-VNLGDKYHKNTALHWAVLA 187 (240)
T ss_dssp CC-TTCCCTTTCCCHHHHHHHH
T ss_pred CC-cchhhccCCCcHHHHHHHc
Confidence 55 444444 555555555444
No 119
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.58 E-value=2.9e-09 Score=111.17 Aligned_cols=71 Identities=13% Similarity=0.078 Sum_probs=64.7
Q ss_pred ccCCCchhhhhhcccCCcccccc------cccccceEEEe---eccCCchhhHHHHhcCCCCCcccCCCCCceeEEeecc
Q 011140 257 SVGSGSSKIVRAVPKVDTHQDVK------SGVQKFRVKLL---AESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (492)
Q Consensus 257 ~~~~G~~~iVr~LlkagA~vn~k------D~~gkTpLHlA---a~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe 327 (492)
|+..|+.++|+.||+.|+++|.+ |..|+|+||+| +..|+.++|+.|+++|++ +++.|.+|+|+||+|...
T Consensus 139 A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~-vn~~d~~g~TpLh~A~~~ 217 (497)
T 3lvq_E 139 AICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNTALHYAALY 217 (497)
T ss_dssp HHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCC-TTCCCSSSCCHHHHHTTT
T ss_pred HHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHc
Confidence 44455699999999999999988 88999999999 669999999999999999 999999999999999877
Q ss_pred c
Q 011140 328 N 328 (492)
Q Consensus 328 ~ 328 (492)
.
T Consensus 218 g 218 (497)
T 3lvq_E 218 N 218 (497)
T ss_dssp T
T ss_pred C
Confidence 4
No 120
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=98.52 E-value=5.7e-09 Score=94.30 Aligned_cols=85 Identities=12% Similarity=-0.028 Sum_probs=67.2
Q ss_pred ccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCCCCCcccCCC
Q 011140 237 TLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPN 316 (492)
Q Consensus 237 a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~Dkn 316 (492)
..+|++|...-+. |+..|+.++|+.|++.|++++.+|..|.|+||+|++.|+.++++.|++.|++-....+..
T Consensus 3 ~~~d~~~~~~l~~-------A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~ 75 (240)
T 3eu9_A 3 THIDDYSTWDIVK-------ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL 75 (240)
T ss_dssp CCCSCGGGCCHHH-------HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTT
T ss_pred cccccccchHHHH-------HHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCc
Confidence 3445554444333 566677999999999999999999999999999999999999999999999834355566
Q ss_pred CCceeEEeeccc
Q 011140 317 TSRTLRIYPLEN 328 (492)
Q Consensus 317 gnnaLHIApLe~ 328 (492)
+.++||+|....
T Consensus 76 ~~t~L~~A~~~~ 87 (240)
T 3eu9_A 76 NSTPLHWATRQG 87 (240)
T ss_dssp TBCHHHHHHHHT
T ss_pred CCChhHHHHHcC
Confidence 889999987653
No 121
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=98.51 E-value=1.2e-08 Score=99.10 Aligned_cols=61 Identities=7% Similarity=0.077 Sum_probs=56.1
Q ss_pred CCCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHHHhcCC
Q 011140 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (492)
Q Consensus 228 g~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~Ga 307 (492)
..|.|+||+|+..+ +.++|++||++||++|.+|..|+||||+|++.|+.+++++|++.|+
T Consensus 203 ~~g~TpLh~A~~~g--------------------~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga 262 (278)
T 1dcq_A 203 GKGSTALHYCCLTD--------------------NAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS 262 (278)
T ss_dssp TTCCCHHHHHHHTT--------------------CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHcC--------------------CHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 45789999977655 4899999999999999999999999999999999999999999999
Q ss_pred C
Q 011140 308 D 308 (492)
Q Consensus 308 d 308 (492)
+
T Consensus 263 ~ 263 (278)
T 1dcq_A 263 G 263 (278)
T ss_dssp T
T ss_pred C
Confidence 7
No 122
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=98.50 E-value=1.2e-08 Score=104.23 Aligned_cols=71 Identities=10% Similarity=0.023 Sum_probs=65.3
Q ss_pred ccCC-CchhhhhhcccCCccccccc--ccccceEEEeeccCCchhhHHHHhcCCCCCcccCCCCCceeEEeeccc
Q 011140 257 SVGS-GSSKIVRAVPKVDTHQDVKS--GVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 257 ~~~~-G~~~iVr~LlkagA~vn~kD--~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe~ 328 (492)
|+.. |+.++|+.||+.|+++|.+| ..|.|+||+|+..|+.++|+.|+++|++ +++.|.+|+|+||+|....
T Consensus 206 Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~~G~TpLh~A~~~g 279 (368)
T 3jue_A 206 ASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPLHHATILG 279 (368)
T ss_dssp HTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHT
T ss_pred HHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcC
Confidence 3444 67999999999999999998 8999999999999999999999999999 9999999999999997664
No 123
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=98.19 E-value=1.1e-07 Score=78.71 Aligned_cols=54 Identities=7% Similarity=0.132 Sum_probs=48.5
Q ss_pred CCCCCCccccccccCCcccCCCCcccccccCCCchhhhhhcccCCcccccccccccceEEEeeccCCchhhHHH
Q 011140 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVL 302 (492)
Q Consensus 229 ~~~~~~~~a~~~d~~~~i~~~s~~~~~~~~~~G~~~iVr~LlkagA~vn~kD~~gkTpLHlAa~~G~~~iv~vL 302 (492)
.|.|+||+|+..+. .+||+.||+.|+++|.+|..|+|+||+|++.|+.++++.|
T Consensus 56 ~g~tpLh~A~~~~~--------------------~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 56 NGSTPLHLAARNGH--------------------LEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp TCCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred CCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCccccccCCCcHHHHHHHcCCHHHHHHh
Confidence 46789999776554 8999999999999999999999999999999999988866
No 124
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=98.15 E-value=1.3e-08 Score=104.11 Aligned_cols=70 Identities=11% Similarity=0.209 Sum_probs=59.8
Q ss_pred ccCCCchhhhhhcccCCcc---cccccccccceEEEeeccCCchhhHHHHhcCCCCCcc--cCCCCCceeEEee-ccc
Q 011140 257 SVGSGSSKIVRAVPKVDTH---QDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRM--LDPNTSRTLRIYP-LEN 328 (492)
Q Consensus 257 ~~~~G~~~iVr~LlkagA~---vn~kD~~gkTpLHlAa~~G~~~iv~vLlq~GadGv~v--~DkngnnaLHIAp-Le~ 328 (492)
|+..|+.+||+.|++.||+ +++++.. +||||+|++.|+.++|+.|++.|++ ++. .|.+|.|+||+|. ...
T Consensus 135 Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~-~~~~~~d~~g~TpL~~Aa~~~G 210 (376)
T 2aja_A 135 AAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPT-EATAMIQAENYYAFRWAAVGRG 210 (376)
T ss_dssp HHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGG-GHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCc-cchhccCCCCCCHHHHHHHHCC
Confidence 6778889999999999986 3444444 9999999999999999999999999 666 8889999999998 653
No 125
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=97.88 E-value=3.5e-06 Score=86.23 Aligned_cols=44 Identities=18% Similarity=0.372 Sum_probs=39.8
Q ss_pred CCCCcccCcCCccccccCccc-cCccccccccccCceeccCCCCC
Q 011140 418 EKDHWVPDEAVSKCTACGTDF-SAFVRKHHCRNCGDIFCDKCTHG 461 (492)
Q Consensus 418 ~~p~WvpD~~v~~C~~C~~~F-s~~~RRHHCR~CG~VfC~kCS~~ 461 (492)
+...|.++...+.|+.|+..| +++.|+||||.||.+||.+|+..
T Consensus 347 h~f~~~~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~ 391 (406)
T 2vrw_B 347 HDFQMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391 (406)
T ss_dssp CCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGG
T ss_pred CCCccccCCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhh
Confidence 356799999999999999999 48999999999999999999873
No 126
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=97.85 E-value=1.3e-07 Score=96.74 Aligned_cols=64 Identities=6% Similarity=0.037 Sum_probs=57.1
Q ss_pred ccCCCchhhhhhcccCCccccc--ccccccceEEEee-ccCCchhhHHHHhcCCCCCcccCCCCCceeEEeeccc
Q 011140 257 SVGSGSSKIVRAVPKVDTHQDV--KSGVQKFRVKLLA-ESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (492)
Q Consensus 257 ~~~~G~~~iVr~LlkagA~vn~--kD~~gkTpLHlAa-~~G~~~iv~vLlq~GadGv~v~DkngnnaLHIApLe~ 328 (492)
|+..|+.+||+.|++.|++++. +|..|+||||+|+ ++|+.++|+.|++.|++ +.++||+|....
T Consensus 170 Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~--------~~taL~~Aa~~g 236 (376)
T 2aja_A 170 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM--------LAYAEIHEFEYG 236 (376)
T ss_dssp HHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH--------HHHHHHCTTTTT
T ss_pred HHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc--------cchHHHHHHHCC
Confidence 6778889999999999999998 8999999999999 99999999999997754 678899887653
No 127
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=95.95 E-value=0.0026 Score=68.45 Aligned_cols=43 Identities=19% Similarity=0.402 Sum_probs=38.2
Q ss_pred CCCcccCcCCccccccCccc-cCccccccccccCceeccCCCCC
Q 011140 419 KDHWVPDEAVSKCTACGTDF-SAFVRKHHCRNCGDIFCDKCTHG 461 (492)
Q Consensus 419 ~p~WvpD~~v~~C~~C~~~F-s~~~RRHHCR~CG~VfC~kCS~~ 461 (492)
.-.|......+.|+.|+..| +++.+.|||+.||.++|.+|...
T Consensus 520 ~F~~~~~~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~ 563 (587)
T 3ky9_A 520 DFQMFSFEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGR 563 (587)
T ss_dssp CEEEECCSSCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGG
T ss_pred ceeEEeCCCCcccccccccccccccCCcCCCCCCCccchhhhhc
Confidence 45677888899999999887 88899999999999999999885
No 128
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=95.34 E-value=0.0092 Score=53.56 Aligned_cols=53 Identities=25% Similarity=0.710 Sum_probs=43.0
Q ss_pred CCccccccCccccCc-cccccccccCceeccCCCCCcEecccCCCCCceecccchHHH
Q 011140 427 AVSKCTACGTDFSAF-VRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVG 483 (492)
Q Consensus 427 ~v~~C~~C~~~Fs~~-~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~ 483 (492)
....|..|.+.|+++ ++.|-|..|..-||.+|..... ....+..=+|..|.+.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~----~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETS----NNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECC----CSSSSCCEEEHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccC----CCCCccceechhhHHH
Confidence 467899999999855 7899999999999999987431 1234678899999986
No 129
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=94.98 E-value=0.0097 Score=54.56 Aligned_cols=49 Identities=20% Similarity=0.705 Sum_probs=41.2
Q ss_pred CccccccCccccCc-cccccccccCceeccCCCCCcEecccCCCCCceecccchHHH
Q 011140 428 VSKCTACGTDFSAF-VRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVG 483 (492)
Q Consensus 428 v~~C~~C~~~Fs~~-~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~ 483 (492)
...|..|.+.|+++ ++.+-|..|..-||.+|.... . ....=+|..|.+.
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~---~----~~~~W~C~vC~k~ 117 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAH---P----EEQGWLCDPCHLA 117 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECC---S----SSSSCEEHHHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhccccccc---C----CCCcEeeHHHHHH
Confidence 56999999999976 789999999999999998432 1 3567899999976
No 130
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=91.15 E-value=0.13 Score=40.87 Aligned_cols=28 Identities=32% Similarity=0.855 Sum_probs=23.6
Q ss_pred CccccccCccccCccccccccccCceeccCC
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKC 458 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kC 458 (492)
...|..|+++..++ ...|| ||.+||.+.
T Consensus 15 ~~rC~~C~kkvgl~--~f~Cr-Cg~~FC~~H 42 (64)
T 1wfh_A 15 PNRCTVCRKRVGLT--GFMCR-CGTTFCGSH 42 (64)
T ss_dssp CCCCTTTCCCCCTT--CEECS-SSCEECTTT
T ss_pred CCcChhhCCccCcc--CEEee-cCCEecccc
Confidence 46899999998877 68895 999998774
No 131
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=90.70 E-value=0.14 Score=42.83 Aligned_cols=30 Identities=30% Similarity=0.823 Sum_probs=24.8
Q ss_pred CCccccccCccccCccccccccccCceeccCC
Q 011140 427 AVSKCTACGTDFSAFVRKHHCRNCGDIFCDKC 458 (492)
Q Consensus 427 ~v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kC 458 (492)
....|..|+++..+++ ..+|| ||.+||.+.
T Consensus 24 ~~~rC~~C~kkvgl~~-~f~Cr-Cg~~FC~~H 53 (85)
T 1wff_A 24 IMKHCFLCGKKTGLAT-SFECR-CGNNFCASH 53 (85)
T ss_dssp CCCBCSSSCCBCSSSS-CEECT-TCCEECTTT
T ss_pred cCccchhhCCeecccC-CeEcC-CCCEecccC
Confidence 3578999999988863 58998 999999773
No 132
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=90.22 E-value=0.28 Score=40.05 Aligned_cols=28 Identities=29% Similarity=0.861 Sum_probs=23.6
Q ss_pred CccccccCccccCccccccccccCceeccCC
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKC 458 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kC 458 (492)
...|..|+++..++ ...|| ||.+||.+.
T Consensus 25 ~nRC~~CrKkvgL~--gf~Cr-Cg~~FCs~H 52 (74)
T 1wfl_A 25 KNRCFMCRKKVGLT--GFDCR-CGNLFCGLH 52 (74)
T ss_dssp TTBCSSSCCBCGGG--CEECT-TSCEECSSS
T ss_pred CCcChhhCCccccc--CeecC-CCCEechhc
Confidence 45899999998877 47899 999998764
No 133
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.15 E-value=0.12 Score=42.42 Aligned_cols=48 Identities=19% Similarity=0.618 Sum_probs=39.0
Q ss_pred CccccccCccccCc-cccccccccCceeccCCCCCcEecccCCCCCceecccchHHH
Q 011140 428 VSKCTACGTDFSAF-VRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVG 483 (492)
Q Consensus 428 v~~C~~C~~~Fs~~-~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~ 483 (492)
...|..|++.|+++ +|---|+.|-+-||.+|-... ....=.|..|+++
T Consensus 25 ~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~--------~~~~W~C~VC~k~ 73 (76)
T 2csz_A 25 DRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQE--------SNGTWRCKVCSGP 73 (76)
T ss_dssp CCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEEC--------STTCEEEHHHHSS
T ss_pred ccchhhhCccccccccCCCcCcccChhhcccccccC--------CCCCEEEeeCchh
Confidence 56899999999976 589999999999999995432 1256789999865
No 134
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=88.91 E-value=0.35 Score=39.45 Aligned_cols=28 Identities=25% Similarity=0.870 Sum_probs=23.9
Q ss_pred CccccccCccccCccccccccccCceeccCC
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKC 458 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kC 458 (492)
...|..|+++..++ ...| +||.+||.+.
T Consensus 25 ~~RC~~C~kkvgL~--~f~C-rCg~~FCs~H 52 (74)
T 1wfp_A 25 ATRCLSCNKKVGVT--GFKC-RCGSTFCGTH 52 (74)
T ss_dssp CCBCSSSCCBCTTT--CEEC-TTSCEECTTT
T ss_pred CccchhhcCccccc--ceEe-ccCCEecccc
Confidence 56899999998887 6899 5999998764
No 135
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=88.86 E-value=0.27 Score=39.07 Aligned_cols=28 Identities=25% Similarity=0.876 Sum_probs=23.4
Q ss_pred CccccccCccccCccccccccccCceeccCC
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKC 458 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kC 458 (492)
...|..|+++..++ ...| +||.+||.+.
T Consensus 15 ~~rC~~C~kkvgl~--~f~C-rCg~~FC~~H 42 (64)
T 1wg2_A 15 NNRCFSCNKKVGVM--GFKC-KCGSTFCGSH 42 (64)
T ss_dssp SCSCTTTCCCCTTS--CEEC-TTSCEECSSS
T ss_pred CCcChhhCCccccc--CeEe-ecCCEecccC
Confidence 45899999988876 6889 6999998774
No 136
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.21 E-value=0.17 Score=38.09 Aligned_cols=34 Identities=21% Similarity=0.520 Sum_probs=27.9
Q ss_pred CCcccCcCCccccccCccccCc--cccccccccCcee
Q 011140 420 DHWVPDEAVSKCTACGTDFSAF--VRKHHCRNCGDIF 454 (492)
Q Consensus 420 p~WvpD~~v~~C~~C~~~Fs~~--~RRHHCR~CG~Vf 454 (492)
..|+.. ....|..|++.|.++ .|+|-|..||+++
T Consensus 5 ~~~~~~-~~~~CPrCn~~f~~~~sLr~HmkycCp~~v 40 (49)
T 2e72_A 5 SSGQDG-GRKICPRCNAQFRVTEALRGHMCYCCPEMV 40 (49)
T ss_dssp SSSCCS-SCCCCTTTCCCCSSHHHHHHHHHHHCTTTC
T ss_pred cccccC-CceeCCcccccccchHHHHhhhhhcCcchh
Confidence 356655 567999999999987 4899999999976
No 137
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=84.05 E-value=0.29 Score=36.40 Aligned_cols=44 Identities=16% Similarity=0.403 Sum_probs=29.6
Q ss_pred CCccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHH
Q 011140 427 AVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVI 485 (492)
Q Consensus 427 ~v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~ 485 (492)
+...|.+|...|..- .--.||++||..|... ..+.|-.|...+.
T Consensus 5 ~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~-----------~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 5 QFLRCQQCQAEAKCP----KLLPCLHTLCSGCLEA-----------SGMQCPICQAPWP 48 (56)
T ss_dssp CCSSCSSSCSSCBCC----SCSTTSCCSBTTTCSS-----------SSSSCSSCCSSSS
T ss_pred cCCCceEeCCccCCe----EEcCCCCcccHHHHcc-----------CCCCCCcCCcEee
Confidence 345799998877643 2246999999999765 2345666655443
No 138
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.77 E-value=0.42 Score=38.30 Aligned_cols=31 Identities=26% Similarity=0.687 Sum_probs=24.4
Q ss_pred CCccccccCccccCccc-cccccccCceeccCC
Q 011140 427 AVSKCTACGTDFSAFVR-KHHCRNCGDIFCDKC 458 (492)
Q Consensus 427 ~v~~C~~C~~~Fs~~~R-RHHCR~CG~VfC~kC 458 (492)
....|..|+++..++.. -..| +||.+||.+.
T Consensus 14 ~~~rC~~C~kk~gL~~~egf~C-rCg~~FC~~H 45 (67)
T 1x4w_A 14 SRRRCFQCQTKLELVQQELGSC-RCGYVFCMLH 45 (67)
T ss_dssp CTTBCSSSCCBCCHHHHHHHCC-SSSCCCCTTT
T ss_pred cCCcchhhCCeecccccCceEe-cCCCEehhcc
Confidence 35689999999886643 3789 7999998764
No 139
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=82.90 E-value=1.1 Score=35.14 Aligned_cols=51 Identities=29% Similarity=0.753 Sum_probs=38.6
Q ss_pred CccccccC-ccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHH
Q 011140 428 VSKCTACG-TDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVG 483 (492)
Q Consensus 428 v~~C~~C~-~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~ 483 (492)
...|.+|. ++|.--. -|.|..|-.-||.+|.. ++.|. +.+-.-||+.|.+.
T Consensus 9 ~~~C~iC~KTKFADG~-Gh~C~yCk~r~CaRCGg-~v~lr---~~k~~WvC~lC~k~ 60 (62)
T 2a20_A 9 APTCGICHKTKFADGC-GHNCSYCQTKFCARCGG-RVSLR---SNKVMWVCNLCRKQ 60 (62)
T ss_dssp CCCCSSSSCSCCCSSC-CEEBTTTCCEECTTSEE-EEESS---TTCEEEEEHHHHHH
T ss_pred cchhhhhccceeccCC-CccccccCCeeecccCC-Eeeec---CCeEEEEehhhhhc
Confidence 55899996 5665433 58899999999999976 45553 45788899999764
No 140
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=80.94 E-value=0.86 Score=32.82 Aligned_cols=36 Identities=22% Similarity=0.461 Sum_probs=27.4
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcE
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI 463 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri 463 (492)
...|.+|...|..-.+......||.+||..|....+
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~ 40 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEML 40 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHH
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHH
Confidence 458999998886544455566799999999987553
No 141
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=80.57 E-value=0.26 Score=38.49 Aligned_cols=43 Identities=21% Similarity=0.589 Sum_probs=30.9
Q ss_pred ccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccch
Q 011140 429 SKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRC 480 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~C 480 (492)
..|..|++.|.... +..|.+|+.+||..|=.+ ....++.|-.|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~f--------iHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDCDVF--------VHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHHHHT--------TTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccchhHH--------HHhhccCCcCC
Confidence 46999999996433 378999999999999432 12355666555
No 142
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.94 E-value=0.15 Score=39.41 Aligned_cols=47 Identities=23% Similarity=0.512 Sum_probs=31.4
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHHH
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVID 486 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~~ 486 (492)
...|.+|...|..-.. -.||++||..|....+. ..+.|-.|...+..
T Consensus 15 ~~~C~IC~~~~~~~~~----~~CgH~fC~~Ci~~~~~--------~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 15 VPECAICLQTCVHPVS----LPCKHVFCYLCVKGASW--------LGKRCALCRQEIPE 61 (71)
T ss_dssp CCBCSSSSSBCSSEEE----ETTTEEEEHHHHHHCTT--------CSSBCSSSCCBCCH
T ss_pred CCCCccCCcccCCCEE----ccCCCHHHHHHHHHHHH--------CCCcCcCcCchhCH
Confidence 4579999887754322 26999999999874321 12578888766543
No 143
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=77.63 E-value=0.93 Score=36.43 Aligned_cols=29 Identities=24% Similarity=0.649 Sum_probs=22.2
Q ss_pred CccccccCccccCccc-cccccccCc-eecc
Q 011140 428 VSKCTACGTDFSAFVR-KHHCRNCGD-IFCD 456 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~R-RHHCR~CG~-VfC~ 456 (492)
.-.|..|+..|.+..+ ..+|+.||. |+-.
T Consensus 28 ~Y~C~~CG~~~e~~~~d~irCp~CG~RILyK 58 (70)
T 1twf_L 28 KYICAECSSKLSLSRTDAVRCKDCGHRILLK 58 (70)
T ss_dssp CEECSSSCCEECCCTTSTTCCSSSCCCCCBC
T ss_pred EEECCCCCCcceeCCCCCccCCCCCceEeEe
Confidence 3479999999988643 568999998 6543
No 144
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.24 E-value=0.53 Score=36.00 Aligned_cols=48 Identities=25% Similarity=0.428 Sum_probs=32.3
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHH
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGV 484 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L 484 (492)
...|.+|...|..-.. -.||++||..|....+. .....+.|-.|...+
T Consensus 20 ~~~C~IC~~~~~~~~~----~~CgH~fC~~Ci~~~~~-----~~~~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 20 EVICPICLDILQKPVT----IDCGHNFCLKCITQIGE-----TSCGFFKCPLCKTSV 67 (73)
T ss_dssp CCBCTTTCSBCSSEEE----CTTCCEEEHHHHHHHCS-----SSCSCCCCSSSCCCC
T ss_pred CCEeccCCcccCCeEE----cCCCChhhHHHHHHHHH-----cCCCCCCCCCCCCcC
Confidence 4589999887764222 27999999999876542 112345677776554
No 145
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=77.21 E-value=1.3 Score=31.84 Aligned_cols=47 Identities=17% Similarity=0.429 Sum_probs=31.0
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHH
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMV 482 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~ 482 (492)
...|.+|...|..-.+-.....||.+||..|....+ +....|-.|..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~--------~~~~~CP~Cr~ 51 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWL--------GSHSTCPLCRL 51 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTT--------TTCCSCSSSCC
T ss_pred CCcCccCCccccCCCceEECCCCCCcccHHHHHHHH--------HcCCcCcCCCC
Confidence 458999998886543323333699999999986442 12346777754
No 146
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.01 E-value=0.085 Score=39.84 Aligned_cols=50 Identities=22% Similarity=0.632 Sum_probs=33.2
Q ss_pred CccccccCccccCc---cccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHH
Q 011140 428 VSKCTACGTDFSAF---VRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVI 485 (492)
Q Consensus 428 v~~C~~C~~~Fs~~---~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~ 485 (492)
...|.+|...|..- .+...-..||.+||..|....+. ..+.|-.|...|.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~--------~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK--------NANTCPTCRKKIN 67 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHH--------HCSSCTTTCCCCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHH--------cCCCCCCCCCccC
Confidence 45899998877643 22224568999999999875532 1346777765543
No 147
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=76.25 E-value=0.37 Score=39.90 Aligned_cols=31 Identities=19% Similarity=0.693 Sum_probs=24.4
Q ss_pred cccccCccccCccccccccccCceeccCCCCCcE
Q 011140 430 KCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI 463 (492)
Q Consensus 430 ~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri 463 (492)
.|.+|...|. .-..|..||++||..|....+
T Consensus 24 ~C~IC~~~~~---~p~~~~~CgH~FC~~Ci~~~~ 54 (100)
T 3lrq_A 24 RCFICMEKLR---DARLCPHCSKLCCFSCIRRWL 54 (100)
T ss_dssp BCTTTCSBCS---SEEECTTTCCEEEHHHHHHHH
T ss_pred CCccCCcccc---CccccCCCCChhhHHHHHHHH
Confidence 7999988765 345568999999999987543
No 148
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=74.29 E-value=1.5 Score=34.07 Aligned_cols=49 Identities=18% Similarity=0.426 Sum_probs=32.0
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHH
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVI 485 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~ 485 (492)
...|.+|...|..-.. ..--.||++||..|....+. ..+.|-.|...+.
T Consensus 15 ~~~C~IC~~~~~~~~~-~~~~~C~H~fc~~Ci~~~~~--------~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 15 GLECPVCKEDYALGES-VRQLPCNHLFHDSCIVPWLE--------QHDSCPVCRKSLT 63 (78)
T ss_dssp SCCCTTTTSCCCTTSC-EEECTTSCEEETTTTHHHHT--------TTCSCTTTCCCCC
T ss_pred CCCCeeCCccccCCCC-EEEeCCCCeecHHHHHHHHH--------cCCcCcCcCCccC
Confidence 4589999888764321 11125999999999876531 1257888866554
No 149
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.24 E-value=1.3 Score=34.79 Aligned_cols=52 Identities=21% Similarity=0.432 Sum_probs=34.4
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHH
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGV 484 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L 484 (492)
...|.+|...|....++-.--.||++||..|....+.-. .....|-.|...+
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS-----INGVRCPFCSKIT 66 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC-----SSCBCCTTTCCCB
T ss_pred CCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC-----CCCcCCCCCCCcc
Confidence 357999999887654333344799999999987654211 1245677776543
No 150
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.84 E-value=0.46 Score=36.20 Aligned_cols=46 Identities=22% Similarity=0.507 Sum_probs=33.4
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHHH
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVID 486 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~~ 486 (492)
...|.+|...|.. .-..||++||..|....+ +..+.|-.|...+..
T Consensus 15 ~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~--------~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 15 EEECCICMDGRAD-----LILPCAHSFCQKCIDKWS--------DRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCSSSCCSCCS-----EEETTTEEECHHHHHHSS--------CCCSSCHHHHHCTTC
T ss_pred CCCCeeCCcCccC-----cccCCCCcccHHHHHHHH--------HCcCcCCCcCCcccC
Confidence 4589999887765 335799999999987542 135678888877654
No 151
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=73.43 E-value=1.1 Score=34.66 Aligned_cols=52 Identities=15% Similarity=0.370 Sum_probs=33.5
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHH
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGV 484 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L 484 (492)
...|.+|...|..-.. -.||++||..|....+..... .......|-.|...+
T Consensus 12 ~~~C~IC~~~~~~p~~----l~CgH~fC~~Ci~~~~~~~~~-~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 12 EVTCPICLELLTEPLS----LDCGHSLCRACITVSNKEAVT-SMGGKSSCPVCGISY 63 (79)
T ss_dssp CCEETTTTEECSSCCC----CSSSCCCCHHHHSCCCCCCSS-SCCCCCCCSSSCCCC
T ss_pred CCCCcCCCcccCCeeE----CCCCCHHHHHHHHHHHHhccc-CCCCCCcCCCCCCcC
Confidence 3479999988764322 369999999999865432111 112356688786654
No 152
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.30 E-value=1.1 Score=35.66 Aligned_cols=58 Identities=16% Similarity=0.316 Sum_probs=38.3
Q ss_pred CCCcccCcCCccccccCccccCc---------c-c-cccccccCceeccCCCCCcEecccCCCCCceecccchHHHH
Q 011140 419 KDHWVPDEAVSKCTACGTDFSAF---------V-R-KHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGV 484 (492)
Q Consensus 419 ~p~WvpD~~v~~C~~C~~~Fs~~---------~-R-RHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L 484 (492)
...|.-|.+...|.+|...|... . . ...--.||.+||..|....+. ....|-.|...+
T Consensus 6 ~~~w~~~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~--------~~~~CP~CR~~~ 74 (81)
T 2ecl_A 6 SGMWSWDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK--------QNNRCPLCQQDW 74 (81)
T ss_dssp CCCCCCSCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT--------TCCBCTTTCCBC
T ss_pred eEEeeecCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH--------hCCCCCCcCCCc
Confidence 45677777788999999988642 1 1 112225999999999875421 224787776544
No 153
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.68 E-value=0.2 Score=38.03 Aligned_cols=47 Identities=21% Similarity=0.633 Sum_probs=32.2
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHH
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVI 485 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~ 485 (492)
...|.+|...|..-.. -.||++||..|....+. +....|-.|...+.
T Consensus 15 ~~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~~-------~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 15 KYKCEKCHLVLCSPKQ----TECGHRFCESCMAALLS-------SSSPKCTACQESIV 61 (66)
T ss_dssp CEECTTTCCEESSCCC----CSSSCCCCHHHHHHHHT-------TSSCCCTTTCCCCC
T ss_pred CCCCCCCChHhcCeeE----CCCCCHHHHHHHHHHHH-------hCcCCCCCCCcCCC
Confidence 3579999887754332 48999999999876532 23446777766553
No 154
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=72.03 E-value=0.66 Score=38.74 Aligned_cols=55 Identities=15% Similarity=0.237 Sum_probs=35.0
Q ss_pred ccccccCccccCcc--------------ccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHHH
Q 011140 429 SKCTACGTDFSAFV--------------RKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVID 486 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~--------------RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~~ 486 (492)
..|.+|...|..-. +......||++||..|....+... ..+....|-.|...+..
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~---~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNG---NKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHT---CCSSCCBCTTTCCBSSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcc---cCCCCCcCCCCCCccCC
Confidence 38999998885421 111245799999999988654221 12345678888665433
No 155
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=71.84 E-value=1.2 Score=37.23 Aligned_cols=46 Identities=20% Similarity=0.480 Sum_probs=31.0
Q ss_pred ccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHH
Q 011140 429 SKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVI 485 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~ 485 (492)
..|.+|...|..-.. -.||++||..|....+. .....|-.|...+.
T Consensus 16 ~~C~iC~~~~~~p~~----~~CgH~fC~~Ci~~~~~-------~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 16 CQCGICMEILVEPVT----LPCNHTLCKPCFQSTVE-------KASLCCPFCRRRVS 61 (115)
T ss_dssp HBCTTTCSBCSSCEE----CTTSCEECHHHHCCCCC-------TTTSBCTTTCCBCH
T ss_pred CCCccCCcccCceeE----cCCCCHHhHHHHHHHHh-------HCcCCCCCCCcccC
Confidence 479999887753222 27999999999876532 12356777766543
No 156
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=69.23 E-value=0.68 Score=39.46 Aligned_cols=45 Identities=18% Similarity=0.443 Sum_probs=29.8
Q ss_pred ccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHH
Q 011140 429 SKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGV 484 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L 484 (492)
..|.+|...|..-. --.||++||..|....+. ...+.|-.|...+
T Consensus 53 ~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~-------~~~~~CP~Cr~~~ 97 (124)
T 3fl2_A 53 FQCICCQELVFRPI----TTVCQHNVCKDCLDRSFR-------AQVFSCPACRYDL 97 (124)
T ss_dssp TBCTTTSSBCSSEE----ECTTSCEEEHHHHHHHHH-------TTCCBCTTTCCBC
T ss_pred CCCCcCChHHcCcE----EeeCCCcccHHHHHHHHh-------HCcCCCCCCCccC
Confidence 37999988776322 237999999999875432 1234677775544
No 157
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=68.65 E-value=0.28 Score=39.91 Aligned_cols=48 Identities=15% Similarity=0.283 Sum_probs=31.8
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHH
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGV 484 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L 484 (492)
...|.+|...|..-.. ...-.||.+||..|....+. ....|-.|...+
T Consensus 40 ~~~C~IC~~~~~~~~~-~~~l~C~H~Fh~~Ci~~wl~--------~~~~CP~Cr~~~ 87 (91)
T 2l0b_A 40 EMCCPICCSEYVKGDV-ATELPCHHYFHKPCVSIWLQ--------KSGTCPVCRCMF 87 (91)
T ss_dssp CSEETTTTEECCTTCE-EEEETTTEEEEHHHHHHHHT--------TTCBCTTTCCBS
T ss_pred CCCCcccChhhcCCCc-EEecCCCChHHHHHHHHHHH--------cCCcCcCcCccC
Confidence 4589999988865321 22235999999999876531 124788886544
No 158
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.53 E-value=2 Score=31.96 Aligned_cols=32 Identities=28% Similarity=0.482 Sum_probs=23.9
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcE
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI 463 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri 463 (492)
...|.+|...|..-.. -.||++||..|....+
T Consensus 20 ~~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~ 51 (63)
T 2ysj_A 20 EVICPICLDILQKPVT----IDCGHNFCLKCITQIG 51 (63)
T ss_dssp CCBCTTTCSBCSSCEE----CTTSSEECHHHHHHHH
T ss_pred CCCCCcCCchhCCeEE----eCCCCcchHHHHHHHH
Confidence 4579999887764322 2799999999987654
No 159
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=68.48 E-value=1.3 Score=36.70 Aligned_cols=55 Identities=18% Similarity=0.385 Sum_probs=25.5
Q ss_pred cccccCccccCccccccccccCce-----eccCCCCCcEecccCCCCCceecccchHHHHHH
Q 011140 430 KCTACGTDFSAFVRKHHCRNCGDI-----FCDKCTHGRIALTADANAQPVRVCDRCMVGVID 486 (492)
Q Consensus 430 ~C~~C~~~Fs~~~RRHHCR~CG~V-----fC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~~ 486 (492)
.|..|+.....-.+.+||..|++- ||-.|-..-..|..=+. ..-.|..|.+.+++
T Consensus 4 ~CP~C~~~l~~~~~~~~C~~C~~~~~~~afCPeCgq~Le~lkACGA--~~yFC~~C~~LiSk 63 (81)
T 2jrp_A 4 TCPVCHHALERNGDTAHCETCAKDFSLQALCPDCRQPLQVLKACGA--VDYFCQNGHGLISK 63 (81)
T ss_dssp CCSSSCSCCEECSSEEECTTTCCEEEEEEECSSSCSCCCEEEETTE--EEECCTTTTCCCCT
T ss_pred CCCCCCCccccCCCceECccccccCCCcccCcchhhHHHHHHhcCC--cCeeeccCCCEeec
Confidence 455555544444445555555543 45555443322222111 14456666655443
No 160
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=68.32 E-value=0.78 Score=41.02 Aligned_cols=46 Identities=17% Similarity=0.467 Sum_probs=31.0
Q ss_pred ccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHH
Q 011140 429 SKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGV 484 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L 484 (492)
..|.+|...|.. -..+..||++||..|....+. .....|-.|...+
T Consensus 55 ~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~-------~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 55 LMCPICLDMLKN---TMTTKECLHRFCADCIITALR-------SGNKECPTCRKKL 100 (165)
T ss_dssp HBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHH-------TTCCBCTTTCCBC
T ss_pred CCCcccChHhhC---cCEeCCCCChhHHHHHHHHHH-------hCcCCCCCCCCcC
Confidence 479999877654 233458999999999876532 1134577776544
No 161
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.86 E-value=2.4 Score=32.75 Aligned_cols=52 Identities=17% Similarity=0.425 Sum_probs=32.4
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHH
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVI 485 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~ 485 (492)
...|.+|...|..-.. -.||++||..|....+..... ......|-.|...+.
T Consensus 19 ~~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~~~~~~--~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 19 EVTCPICLELLTQPLS----LDCGHSFCQACLTANHKKSML--DKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCTTTCSCCSSCBC----CSSSCCBCTTHHHHHHHHHHH--TTSCCCCTTTCCSSC
T ss_pred CCCCCCCCcccCCcee----CCCCCHHHHHHHHHHHHHhhc--CCCCCcCCCCCCccC
Confidence 3479999887754322 269999999998754322100 112456777766543
No 162
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=66.15 E-value=2 Score=36.28 Aligned_cols=30 Identities=27% Similarity=0.806 Sum_probs=21.8
Q ss_pred ccccccCccccCcccccccc-ccCceeccCCCCCc
Q 011140 429 SKCTACGTDFSAFVRKHHCR-NCGDIFCDKCTHGR 462 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~RRHHCR-~CG~VfC~kCS~~r 462 (492)
-.|.+|...|.. -.-- .||++||..|....
T Consensus 23 ~~C~IC~~~~~~----pv~~~~CgH~fC~~Ci~~~ 53 (117)
T 1jm7_B 23 LRCSRCTNILRE----PVCLGGCEHIFCSNCVSDC 53 (117)
T ss_dssp TSCSSSCSCCSS----CBCCCSSSCCBCTTTGGGG
T ss_pred CCCCCCChHhhC----ccEeCCCCCHHHHHHHHHH
Confidence 379999876642 2222 79999999998755
No 163
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=64.57 E-value=2.8 Score=31.65 Aligned_cols=26 Identities=31% Similarity=0.821 Sum_probs=19.4
Q ss_pred cccccCccccCc------------cccccccccCceec
Q 011140 430 KCTACGTDFSAF------------VRKHHCRNCGDIFC 455 (492)
Q Consensus 430 ~C~~C~~~Fs~~------------~RRHHCR~CG~VfC 455 (492)
.|..|++.|... .|.+.|..||+.|-
T Consensus 6 ~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~ 43 (60)
T 4gzn_C 6 FCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFR 43 (60)
T ss_dssp ECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEES
T ss_pred cCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcC
Confidence 699999999863 24566888888773
No 164
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.48 E-value=2.7 Score=32.12 Aligned_cols=48 Identities=25% Similarity=0.440 Sum_probs=31.3
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHH
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGV 484 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L 484 (492)
...|.+|...|..-..... -.||++||..|....+. ..+.|-.|...+
T Consensus 15 ~~~C~IC~~~~~~~~~~~~-~~C~H~f~~~Ci~~~~~--------~~~~CP~Cr~~~ 62 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGI-CPCKHAFHRKCLIKWLE--------VRKVCPLCNMPV 62 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEE-ETTTEEEEHHHHHHHHH--------HCSBCTTTCCBC
T ss_pred CCCCcCCCcccCCCCcEEE-cCCCCEecHHHHHHHHH--------cCCcCCCcCccc
Confidence 4479999988764332221 25999999999875432 123687776554
No 165
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=63.37 E-value=5.1 Score=30.90 Aligned_cols=34 Identities=26% Similarity=0.570 Sum_probs=26.4
Q ss_pred CccccccCccccCccc--cccccc--cCceeccCCCCC
Q 011140 428 VSKCTACGTDFSAFVR--KHHCRN--CGDIFCDKCTHG 461 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~R--RHHCR~--CG~VfC~kCS~~ 461 (492)
.+.|..|+........ +-.|+. ||..||..|...
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~ 43 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGP 43 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSC
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCC
Confidence 5689999886665532 456988 999999999864
No 166
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=61.28 E-value=1.9 Score=32.55 Aligned_cols=49 Identities=22% Similarity=0.664 Sum_probs=32.8
Q ss_pred CccccccCccccCc---cccccccccCceeccCCCCCcEecccCCCCCceecccchHHHH
Q 011140 428 VSKCTACGTDFSAF---VRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGV 484 (492)
Q Consensus 428 v~~C~~C~~~Fs~~---~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L 484 (492)
...|.+|...|..- .+......||.+||..|....+. ....|-.|...+
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~--------~~~~CP~Cr~~~ 61 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK--------NANTCPTCRKKI 61 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHH--------HCSBCTTTCCBC
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHH--------cCCCCCCCCCcc
Confidence 45899999877643 12335668999999999875432 124677776554
No 167
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.13 E-value=3.1 Score=32.04 Aligned_cols=49 Identities=22% Similarity=0.469 Sum_probs=32.5
Q ss_pred CCccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHH
Q 011140 427 AVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGV 484 (492)
Q Consensus 427 ~v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L 484 (492)
+...|.+|...|..-. ......||.+||..|....+. ....|-.|...+
T Consensus 22 ~~~~C~IC~~~~~~~~-~~~~l~C~H~fh~~Ci~~w~~--------~~~~CP~Cr~~~ 70 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQ-LLRVLPCNHEFHAKCVDKWLK--------ANRTCPICRADS 70 (75)
T ss_dssp SCCEETTTTEECCBTC-EEEEETTTEEEETTHHHHHHH--------HCSSCTTTCCCC
T ss_pred CCCCCeECCcccCCCC-eEEEECCCCHhHHHHHHHHHH--------cCCcCcCcCCcC
Confidence 3568999998876432 234456999999999876532 124677775443
No 168
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=60.30 E-value=4.4 Score=32.93 Aligned_cols=31 Identities=26% Similarity=0.709 Sum_probs=22.9
Q ss_pred cccccCccccC--ccccccccccCceeccCCCC
Q 011140 430 KCTACGTDFSA--FVRKHHCRNCGDIFCDKCTH 460 (492)
Q Consensus 430 ~C~~C~~~Fs~--~~RRHHCR~CG~VfC~kCS~ 460 (492)
-|..|+..|.. ..++..|..||..||..|..
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~ 59 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKR 59 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCS
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCC
Confidence 36667765532 24567899999999999975
No 169
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=59.58 E-value=6.4 Score=29.26 Aligned_cols=13 Identities=31% Similarity=0.682 Sum_probs=10.8
Q ss_pred CccccccCccccC
Q 011140 428 VSKCTACGTDFSA 440 (492)
Q Consensus 428 v~~C~~C~~~Fs~ 440 (492)
.-.|..|++.|..
T Consensus 17 ~~~C~~C~k~f~~ 29 (74)
T 2lce_A 17 PYKCDRCQASFRY 29 (74)
T ss_dssp SBCCTTSSCCBSC
T ss_pred CeECCCCCceeCC
Confidence 4579999999986
No 170
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=59.22 E-value=4.6 Score=32.56 Aligned_cols=27 Identities=26% Similarity=0.715 Sum_probs=18.6
Q ss_pred CccccccCccccCcc------------ccccccccCcee
Q 011140 428 VSKCTACGTDFSAFV------------RKHHCRNCGDIF 454 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~------------RRHHCR~CG~Vf 454 (492)
.-.|..|++.|.... |.+.|..||+.|
T Consensus 28 ~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F 66 (85)
T 2lv2_A 28 CHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATF 66 (85)
T ss_dssp TEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEE
T ss_pred CEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEe
Confidence 457999999998731 234466776666
No 171
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.67 E-value=3.8 Score=29.52 Aligned_cols=31 Identities=26% Similarity=0.610 Sum_probs=23.3
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCc
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGR 462 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~r 462 (492)
...|.+|...|..-.. -.||++||..|....
T Consensus 15 ~~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 15 EASCSVCLEYLKEPVI----IECGHNFCKACITRW 45 (58)
T ss_dssp CCBCSSSCCBCSSCCC----CSSCCCCCHHHHHHH
T ss_pred CCCCccCCcccCccEe----CCCCCccCHHHHHHH
Confidence 3479999887764322 479999999998754
No 172
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=58.15 E-value=3.6 Score=31.97 Aligned_cols=7 Identities=57% Similarity=1.673 Sum_probs=3.5
Q ss_pred ccccCce
Q 011140 447 CRNCGDI 453 (492)
Q Consensus 447 CR~CG~V 453 (492)
||+||+.
T Consensus 20 CrRCG~~ 26 (57)
T 1vq8_1 20 CRRCGEK 26 (57)
T ss_dssp CTTTCSE
T ss_pred ccccCCh
Confidence 5555543
No 173
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.66 E-value=3.3 Score=31.68 Aligned_cols=47 Identities=19% Similarity=0.473 Sum_probs=31.3
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHH
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVI 485 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~ 485 (492)
...|.+|...|.. ......||++||..|....+.. .+.|-.|...+.
T Consensus 15 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~--------~~~CP~Cr~~~~ 61 (72)
T 2djb_A 15 YILCSICKGYLID---ATTITECLHTFCKSCIVRHFYY--------SNRCPKCNIVVH 61 (72)
T ss_dssp GGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHH--------CSSCTTTCCCCC
T ss_pred CCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHc--------CCcCCCcCcccC
Confidence 3479999877653 2233479999999998765421 346777765543
No 174
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=57.37 E-value=1.9 Score=33.40 Aligned_cols=52 Identities=21% Similarity=0.397 Sum_probs=33.2
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHH
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVI 485 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~ 485 (492)
...|.+|...|..-. --.||++||..|....+.... .......|-.|...+.
T Consensus 19 ~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~~~--~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 19 EVTCPICLELLKEPV----SADCNHSFCRACITLNYESNR--NTDGKGNCPVCRVPYP 70 (85)
T ss_dssp TTSCTTTCSCCSSCE----ECTTSCCBCHHHHHHHHHHSB--CTTSCBCCTTTCCCCC
T ss_pred CCCCcCCChhhCcce----eCCCCCHHHHHHHHHHHHhcc--CCCCCCCCCCCCCcCC
Confidence 347999988775432 236999999999875433211 1123567888866553
No 175
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=57.20 E-value=4.9 Score=31.01 Aligned_cols=47 Identities=19% Similarity=0.507 Sum_probs=30.1
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHH
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVG 483 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~ 483 (492)
...|.+|...|..- ..-..||++||..|....+... ..+.|-.|...
T Consensus 15 ~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~------~~~~CP~Cr~~ 61 (74)
T 2yur_A 15 ELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLES------DEHTCPTCHQN 61 (74)
T ss_dssp GGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHS------SSSCCSSSCCS
T ss_pred CCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhc------CCCcCCCCCCc
Confidence 34799998776532 2233499999999987654211 23467777654
No 176
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=57.13 E-value=5.8 Score=27.67 Aligned_cols=12 Identities=33% Similarity=0.927 Sum_probs=9.6
Q ss_pred ccccccCccccC
Q 011140 429 SKCTACGTDFSA 440 (492)
Q Consensus 429 ~~C~~C~~~Fs~ 440 (492)
-.|..|++.|..
T Consensus 5 ~~C~~C~~~f~~ 16 (57)
T 3uk3_C 5 RECSYCGKFFRS 16 (57)
T ss_dssp CBCTTTCCBCSC
T ss_pred ccCCCCcchhCC
Confidence 368899998875
No 177
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=55.83 E-value=5.2 Score=29.91 Aligned_cols=46 Identities=28% Similarity=0.561 Sum_probs=30.4
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHH
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGV 484 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L 484 (492)
...|.+|...|..- .....||.+||..|....+. ....|-.|...+
T Consensus 5 ~~~C~IC~~~~~~~---~~~~~C~H~fc~~Ci~~~~~--------~~~~CP~Cr~~~ 50 (68)
T 1chc_A 5 AERCPICLEDPSNY---SMALPCLHAFCYVCITRWIR--------QNPTCPLCKVPV 50 (68)
T ss_dssp CCCCSSCCSCCCSC---EEETTTTEEESTTHHHHHHH--------HSCSTTTTCCCC
T ss_pred CCCCeeCCccccCC---cEecCCCCeeHHHHHHHHHh--------CcCcCcCCChhh
Confidence 45899998877532 23457999999999875431 124677775544
No 178
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.71 E-value=5.4 Score=31.37 Aligned_cols=26 Identities=35% Similarity=0.847 Sum_probs=19.5
Q ss_pred ccccc--cCccccCccccccccccCceeccC
Q 011140 429 SKCTA--CGTDFSAFVRKHHCRNCGDIFCDK 457 (492)
Q Consensus 429 ~~C~~--C~~~Fs~~~RRHHCR~CG~VfC~k 457 (492)
..|.. |++. .++ ..+|+.||.+||.+
T Consensus 13 ~~Cs~~~Ck~~-~ll--~f~C~~C~~~FC~~ 40 (63)
T 1x4v_A 13 NKCERAGCRQR-EMM--KLTCERCSRNFCIK 40 (63)
T ss_dssp CCCCSTTCCCC-CSS--CCBCSSSCCBCCHH
T ss_pred CCCCccCCCCC-Ccc--ceECCCCCcccCcc
Confidence 46876 9876 333 46999999999954
No 179
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=55.68 E-value=5.1 Score=30.15 Aligned_cols=49 Identities=20% Similarity=0.394 Sum_probs=31.9
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHH
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVI 485 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~ 485 (492)
...|.+|...|..- .......||.+||..|....+.. .+.|-.|...|.
T Consensus 14 ~~~C~IC~~~~~~~-~~~~~~~C~H~fc~~Ci~~~~~~--------~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 14 EEKCTICLSILEEG-EDVRRLPCMHLFHQVCVDQWLIT--------NKKCPICRVDIE 62 (69)
T ss_dssp CCSBTTTTBCCCSS-SCEEECTTSCEEEHHHHHHHHHH--------CSBCTTTCSBSC
T ss_pred CCCCeeCCccccCC-CcEEEeCCCCHHHHHHHHHHHHc--------CCCCcCcCcccc
Confidence 45799998877532 12334469999999998754321 234887766553
No 180
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=55.14 E-value=3.8 Score=33.64 Aligned_cols=45 Identities=22% Similarity=0.503 Sum_probs=28.3
Q ss_pred cccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHH
Q 011140 430 KCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVG 483 (492)
Q Consensus 430 ~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~ 483 (492)
.|.+|...|..-. --.||++||..|....+... .....|-.|...
T Consensus 23 ~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~Cr~~ 67 (112)
T 1jm7_A 23 ECPICLELIKEPV----STKCDHIFCKFCMLKLLNQK-----KGPSQCPLCKND 67 (112)
T ss_dssp SCSSSCCCCSSCC----BCTTSCCCCSHHHHHHHHSS-----SSSCCCTTTSCC
T ss_pred CCcccChhhcCeE----ECCCCCHHHHHHHHHHHHhC-----CCCCCCcCCCCc
Confidence 6999988775322 23799999999987543211 122456666543
No 181
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=55.06 E-value=2.7 Score=36.53 Aligned_cols=57 Identities=19% Similarity=0.406 Sum_probs=6.4
Q ss_pred CCcccCcCCccccccCccccCccc----------cccc----cccCceeccCCCCCcEecccCCCCCceecccchHHHH
Q 011140 420 DHWVPDEAVSKCTACGTDFSAFVR----------KHHC----RNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGV 484 (492)
Q Consensus 420 p~WvpD~~v~~C~~C~~~Fs~~~R----------RHHC----R~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L 484 (492)
..|.-|-+...|.+|...|...-. ...| -.||.+||..|....+. ...+|-.|...+
T Consensus 40 a~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~--------~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 40 ALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK--------TRQVCPLDNREW 110 (117)
T ss_dssp EEEEECCCC----------------------------------------------------------------------
T ss_pred EEEeecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH--------cCCcCCCCCCee
Confidence 467777778899999998864210 1122 26999999999876532 245788887653
No 182
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.98 E-value=4.7 Score=31.48 Aligned_cols=32 Identities=25% Similarity=0.692 Sum_probs=23.6
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcE
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI 463 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri 463 (492)
...|.+|...|..-. -..||++||..|....+
T Consensus 15 ~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~ 46 (81)
T 2csy_A 15 PFRCFICRQAFQNPV----VTKCRHYFCESCALEHF 46 (81)
T ss_dssp CSBCSSSCSBCCSEE----ECTTSCEEEHHHHHHHH
T ss_pred CCCCcCCCchhcCee----EccCCCHhHHHHHHHHH
Confidence 347999988775422 25799999999987553
No 183
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=53.43 E-value=7.3 Score=27.12 Aligned_cols=11 Identities=27% Similarity=0.803 Sum_probs=8.4
Q ss_pred cccccCccccC
Q 011140 430 KCTACGTDFSA 440 (492)
Q Consensus 430 ~C~~C~~~Fs~ 440 (492)
.|..|++.|..
T Consensus 3 ~C~~C~~~f~~ 13 (57)
T 1bbo_A 3 ICEECGIRXKK 13 (57)
T ss_dssp BCTTTCCBCSS
T ss_pred cCCCCcCcCCC
Confidence 58888888875
No 184
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=51.51 E-value=7.7 Score=27.41 Aligned_cols=11 Identities=27% Similarity=0.824 Sum_probs=8.3
Q ss_pred cccccCccccC
Q 011140 430 KCTACGTDFSA 440 (492)
Q Consensus 430 ~C~~C~~~Fs~ 440 (492)
.|..|++.|..
T Consensus 4 ~C~~C~~~f~~ 14 (60)
T 2adr_A 4 VCEVCTRAFAR 14 (60)
T ss_dssp CCTTTCCCBSC
T ss_pred cCCCCccccCC
Confidence 57888888765
No 185
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=50.97 E-value=6.1 Score=29.56 Aligned_cols=27 Identities=26% Similarity=0.602 Sum_probs=17.7
Q ss_pred CccccccCcc-cc-CccccccccccCcee
Q 011140 428 VSKCTACGTD-FS-AFVRKHHCRNCGDIF 454 (492)
Q Consensus 428 v~~C~~C~~~-Fs-~~~RRHHCR~CG~Vf 454 (492)
...|..|+.. |- ....|++|..||.+.
T Consensus 19 ~k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp SEECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred cccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 4579999862 21 123478888888764
No 186
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=50.97 E-value=3.5 Score=30.16 Aligned_cols=50 Identities=22% Similarity=0.643 Sum_probs=32.8
Q ss_pred CccccccCccccCc---cccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHH
Q 011140 428 VSKCTACGTDFSAF---VRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVI 485 (492)
Q Consensus 428 v~~C~~C~~~Fs~~---~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~ 485 (492)
...|.+|...|..- .+.-....||.+||..|....+. ....|-.|...+.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~--------~~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK--------NANTCPTCRKKIN 55 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHH--------HCSBCTTTCCBCT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHH--------cCCCCCCCCccCC
Confidence 34799998877643 12234568999999999875432 1346777765543
No 187
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.71 E-value=3.4 Score=33.01 Aligned_cols=27 Identities=19% Similarity=0.554 Sum_probs=18.0
Q ss_pred ccccccCcccc-Cc-------------cccccccccCceec
Q 011140 429 SKCTACGTDFS-AF-------------VRKHHCRNCGDIFC 455 (492)
Q Consensus 429 ~~C~~C~~~Fs-~~-------------~RRHHCR~CG~VfC 455 (492)
-.|..|++.|. .. .+.+.|..||+.|-
T Consensus 25 ~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~ 65 (98)
T 2gqj_A 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFK 65 (98)
T ss_dssp CCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCS
T ss_pred cCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccC
Confidence 47999999998 32 22345777776663
No 188
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=50.56 E-value=7 Score=28.70 Aligned_cols=12 Identities=33% Similarity=0.816 Sum_probs=9.5
Q ss_pred ccccccCccccC
Q 011140 429 SKCTACGTDFSA 440 (492)
Q Consensus 429 ~~C~~C~~~Fs~ 440 (492)
-.|..|++.|..
T Consensus 10 ~~C~~C~k~f~~ 21 (70)
T 1x5w_A 10 EKCSECSYSCSS 21 (70)
T ss_dssp EECSSSSCEESS
T ss_pred eECCCCCcccCC
Confidence 478889888875
No 189
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=50.43 E-value=3.7 Score=30.20 Aligned_cols=28 Identities=21% Similarity=0.604 Sum_probs=18.7
Q ss_pred ccccccCccccCc---------cccccccccCceecc
Q 011140 429 SKCTACGTDFSAF---------VRKHHCRNCGDIFCD 456 (492)
Q Consensus 429 ~~C~~C~~~Fs~~---------~RRHHCR~CG~VfC~ 456 (492)
-.|..|++.|... .+.+.|..||+.|-.
T Consensus 15 ~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~ 51 (62)
T 1vd4_A 15 FKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEE 51 (62)
T ss_dssp EECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEE
T ss_pred ccCCCCCchhccHHHhHhhcCCCCCEECCCCCCcccc
Confidence 4799999998752 234557777776643
No 190
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=50.04 E-value=3.2 Score=36.08 Aligned_cols=29 Identities=28% Similarity=0.688 Sum_probs=21.6
Q ss_pred cccccCccccCccccccccccCceeccCCCCCc
Q 011140 430 KCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGR 462 (492)
Q Consensus 430 ~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~r 462 (492)
.|.+|...|.-- .--.||++||..|....
T Consensus 55 ~C~iC~~~~~~~----~~~~CgH~fc~~Ci~~~ 83 (138)
T 4ayc_A 55 QCIICSEYFIEA----VTLNCAHSFCSYCINEW 83 (138)
T ss_dssp BCTTTCSBCSSE----EEETTSCEEEHHHHHHH
T ss_pred CCcccCcccCCc----eECCCCCCccHHHHHHH
Confidence 699998877532 22369999999997643
No 191
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=49.58 E-value=15 Score=29.53 Aligned_cols=33 Identities=33% Similarity=0.805 Sum_probs=23.5
Q ss_pred Cccccc--cCccccC--cccccccc-----ccCceeccCCCC
Q 011140 428 VSKCTA--CGTDFSA--FVRKHHCR-----NCGDIFCDKCTH 460 (492)
Q Consensus 428 v~~C~~--C~~~Fs~--~~RRHHCR-----~CG~VfC~kCS~ 460 (492)
..-|.. |+..... -.++..|. .||..||..|..
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~ 66 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKE 66 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTE
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCc
Confidence 445665 7654432 34678897 899999999976
No 192
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=49.43 E-value=7.1 Score=27.53 Aligned_cols=12 Identities=42% Similarity=0.985 Sum_probs=9.5
Q ss_pred ccccccCccccC
Q 011140 429 SKCTACGTDFSA 440 (492)
Q Consensus 429 ~~C~~C~~~Fs~ 440 (492)
-.|..|++.|..
T Consensus 13 ~~C~~C~k~f~~ 24 (54)
T 2eps_A 13 YICQSCGKGFSR 24 (54)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCCcccCC
Confidence 368899988875
No 193
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.15 E-value=6.4 Score=29.49 Aligned_cols=12 Identities=25% Similarity=0.686 Sum_probs=9.6
Q ss_pred ccccccCccccC
Q 011140 429 SKCTACGTDFSA 440 (492)
Q Consensus 429 ~~C~~C~~~Fs~ 440 (492)
-.|..|++.|..
T Consensus 8 ~~C~~C~k~f~~ 19 (78)
T 2d9h_A 8 LQCEICGFTCRQ 19 (78)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCCCeeCC
Confidence 368899998875
No 194
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=48.99 E-value=7.6 Score=28.78 Aligned_cols=12 Identities=42% Similarity=0.971 Sum_probs=9.8
Q ss_pred ccccccCccccC
Q 011140 429 SKCTACGTDFSA 440 (492)
Q Consensus 429 ~~C~~C~~~Fs~ 440 (492)
-.|..|++.|..
T Consensus 15 ~~C~~C~k~f~~ 26 (72)
T 1x6e_A 15 YGCVECGKAFSR 26 (72)
T ss_dssp EECSSSCCEESS
T ss_pred ccCCCCCCccCC
Confidence 479999998875
No 195
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=48.91 E-value=4 Score=30.49 Aligned_cols=49 Identities=20% Similarity=0.518 Sum_probs=30.4
Q ss_pred ccccccCc-cccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHH
Q 011140 429 SKCTACGT-DFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGV 484 (492)
Q Consensus 429 ~~C~~C~~-~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L 484 (492)
..|.+|.. .|..-.++..=..||++||..|....+. +....|-.|...+
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~-------~~~~~CP~Cr~~~ 53 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV-------RGAGNCPECGTPL 53 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHH-------TTSSSCTTTCCCC
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHH-------cCCCcCCCCCCcc
Confidence 37999987 5654333222358999999999875422 1124576676554
No 196
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=48.77 E-value=5.2 Score=32.40 Aligned_cols=32 Identities=19% Similarity=0.521 Sum_probs=23.1
Q ss_pred ccccccCccccCccccccccccCceeccCCCCCcE
Q 011140 429 SKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI 463 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri 463 (492)
..|.+|...|.. -.....||++||..|....+
T Consensus 23 ~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~ 54 (99)
T 2y43_A 23 LRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFL 54 (99)
T ss_dssp TBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHH
T ss_pred CCcccCChhhCC---cCEECCCCCHhhHHHHHHHH
Confidence 379999887753 22234799999999987543
No 197
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=48.02 E-value=9.1 Score=38.50 Aligned_cols=56 Identities=23% Similarity=0.521 Sum_probs=34.3
Q ss_pred CccccccCccc--cCc--------cccccccccCc------eeccCCCCCc-EecccCC--------CCCceecccchHH
Q 011140 428 VSKCTACGTDF--SAF--------VRKHHCRNCGD------IFCDKCTHGR-IALTADA--------NAQPVRVCDRCMV 482 (492)
Q Consensus 428 v~~C~~C~~~F--s~~--------~RRHHCR~CG~------VfC~kCS~~r-i~Lp~~~--------s~kpvRVC~~Cy~ 482 (492)
...|..|+..= +.+ .|..||..||. +-|..|-+.+ +.+-... ....+-+|..|..
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~ 261 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQG 261 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTE
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCCCCeeEEEecCccccCCCcceEEEEcccccc
Confidence 45899998532 222 26789999984 5899998753 2221111 1224556999975
Q ss_pred H
Q 011140 483 G 483 (492)
Q Consensus 483 ~ 483 (492)
-
T Consensus 262 Y 262 (309)
T 2fiy_A 262 Y 262 (309)
T ss_dssp E
T ss_pred h
Confidence 3
No 198
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=47.65 E-value=6.3 Score=35.31 Aligned_cols=32 Identities=28% Similarity=0.727 Sum_probs=23.2
Q ss_pred CCCCCcccCcCCccccccCccccCccccccccccCce
Q 011140 417 EEKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDI 453 (492)
Q Consensus 417 e~~p~WvpD~~v~~C~~C~~~Fs~~~RRHHCR~CG~V 453 (492)
...-.|. -.|..|++.|.....+..|-.||.-
T Consensus 126 ~~~~~~~-----y~C~~Cg~~~~~~~~~~~Cp~CG~~ 157 (165)
T 2lcq_A 126 KKVIKWR-----YVCIGCGRKFSTLPPGGVCPDCGSK 157 (165)
T ss_dssp SSCCCCC-----EEESSSCCEESSCCGGGBCTTTCCB
T ss_pred cccccEE-----EECCCCCCcccCCCCCCcCCCCCCc
Confidence 3455675 4899999999877656678878764
No 199
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=47.64 E-value=9.3 Score=31.03 Aligned_cols=27 Identities=26% Similarity=0.742 Sum_probs=20.4
Q ss_pred Cccccc--cCccccCccccccccccCceeccC
Q 011140 428 VSKCTA--CGTDFSAFVRKHHCRNCGDIFCDK 457 (492)
Q Consensus 428 v~~C~~--C~~~Fs~~~RRHHCR~CG~VfC~k 457 (492)
...|.. |++. .++ -..|+.||.+||.+
T Consensus 14 g~~Cs~~~C~~~-dfl--pf~C~~C~~~FC~~ 42 (75)
T 1wys_A 14 GQHCQVQHCRQR-DFL--PFVCDGCSGIFCLE 42 (75)
T ss_dssp CCCCSCTTTCCC-SCC--CEECTTTCCEECST
T ss_pred CCCcCcccCCCc-cce--eeECcccCcCcCcc
Confidence 357877 8865 333 57899999999975
No 200
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=47.56 E-value=3.1 Score=43.31 Aligned_cols=45 Identities=18% Similarity=0.532 Sum_probs=30.9
Q ss_pred ccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHH
Q 011140 429 SKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGV 484 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L 484 (492)
..|.+|...|. .-..-.||++||..|...... ...+.|-.|...+
T Consensus 333 ~~C~ICle~~~----~pv~lpCGH~FC~~Ci~~wl~-------~~~~~CP~CR~~i 377 (389)
T 2y1n_A 333 QLCKICAENDK----DVKIEPCGHLMCTSCLTSWQE-------SEGQGCPFCRCEI 377 (389)
T ss_dssp SBCTTTSSSBC----CEEEETTCCEECHHHHHHHHH-------HTCSBCTTTCCBC
T ss_pred CCCCccCcCCC----CeEEeCCCChhhHHHHHHHHh-------cCCCCCCCCCCcc
Confidence 58999987663 334578999999999864321 1345677776554
No 201
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=47.52 E-value=5.4 Score=30.74 Aligned_cols=32 Identities=6% Similarity=0.041 Sum_probs=23.2
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcE
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI 463 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri 463 (492)
.-.|.+|...|..- ..-.||++||..|....+
T Consensus 8 ~~~C~IC~~~~~~P----v~~~CgH~fc~~Ci~~~~ 39 (78)
T 1t1h_A 8 YFRCPISLELMKDP----VIVSTGQTYERSSIQKWL 39 (78)
T ss_dssp SSSCTTTSCCCSSE----EEETTTEEEEHHHHHHHH
T ss_pred cCCCCCccccccCC----EEcCCCCeecHHHHHHHH
Confidence 34799998877532 223799999999987553
No 202
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=45.82 E-value=6.6 Score=29.75 Aligned_cols=24 Identities=29% Similarity=0.643 Sum_probs=17.6
Q ss_pred CccccccCccccCccccccccccCce
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDI 453 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~V 453 (492)
...|+.|+.. .-.+--+||+||..
T Consensus 14 k~iCpkC~a~--~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 14 KYVCLRCGAT--NPWGAKKCRKCGYK 37 (51)
T ss_dssp EEECTTTCCE--ECTTCSSCSSSSSC
T ss_pred CccCCCCCCc--CCCCceecCCCCCc
Confidence 4579999876 44567788888874
No 203
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=45.52 E-value=6 Score=32.63 Aligned_cols=31 Identities=26% Similarity=0.573 Sum_probs=22.6
Q ss_pred ccccccCccccCccccccccccCceeccCCCCCc
Q 011140 429 SKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGR 462 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~r 462 (492)
..|.+|...|.. -.....||++||..|....
T Consensus 16 ~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~ 46 (108)
T 2ckl_A 16 LMCVLCGGYFID---ATTIIECLHSFCKTCIVRY 46 (108)
T ss_dssp TBCTTTSSBCSS---EEEETTTCCEEEHHHHHHH
T ss_pred CCCccCChHHhC---cCEeCCCCChhhHHHHHHH
Confidence 379999877643 2233489999999998654
No 204
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=43.08 E-value=10 Score=28.30 Aligned_cols=12 Identities=25% Similarity=0.744 Sum_probs=9.9
Q ss_pred ccccccCccccC
Q 011140 429 SKCTACGTDFSA 440 (492)
Q Consensus 429 ~~C~~C~~~Fs~ 440 (492)
-.|..|++.|..
T Consensus 16 ~~C~~C~k~f~~ 27 (77)
T 2ct1_A 16 YECYICHARFTQ 27 (77)
T ss_dssp EECTTTCCEESC
T ss_pred eECCCcCchhCC
Confidence 479999999876
No 205
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=43.08 E-value=7.3 Score=31.48 Aligned_cols=12 Identities=17% Similarity=0.418 Sum_probs=9.7
Q ss_pred ccccccCccc-cC
Q 011140 429 SKCTACGTDF-SA 440 (492)
Q Consensus 429 ~~C~~C~~~F-s~ 440 (492)
-.|..|++.| ..
T Consensus 35 ~~C~~C~k~F~~~ 47 (96)
T 2ctd_A 35 VSCPTCQAVGRKT 47 (96)
T ss_dssp EECTTTCSCEESS
T ss_pred cCCCCCCCCcccC
Confidence 4799999999 54
No 206
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=42.54 E-value=1.9 Score=33.74 Aligned_cols=41 Identities=22% Similarity=0.536 Sum_probs=27.9
Q ss_pred cccccCccccCccccccccccCce-eccCCCCCcEecccCCCCCceecccchHHHHHH
Q 011140 430 KCTACGTDFSAFVRKHHCRNCGDI-FCDKCTHGRIALTADANAQPVRVCDRCMVGVID 486 (492)
Q Consensus 430 ~C~~C~~~Fs~~~RRHHCR~CG~V-fC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~~ 486 (492)
.|.+|...|... ---.||++ ||..|.... +.|-.|...+..
T Consensus 26 ~C~iC~~~~~~~----~~~pCgH~~~C~~C~~~~------------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 26 LCKICMDRNIAI----VFVPCGHLVTCKQCAEAV------------DKCPMCYTVITF 67 (74)
T ss_dssp BCTTTSSSBCCE----EEETTCCBCCCHHHHTTC------------SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCE----EEcCCCChhHHHHhhhcC------------ccCCCcCcCccC
Confidence 799998766432 22479999 999997632 667777655543
No 207
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=41.29 E-value=7.2 Score=34.68 Aligned_cols=45 Identities=20% Similarity=0.433 Sum_probs=29.1
Q ss_pred ccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHH
Q 011140 429 SKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGV 484 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L 484 (492)
..|.+|...|..-.. -.||.+||..|....+. .....|-.|...+
T Consensus 79 ~~C~IC~~~~~~pv~----~~CgH~fC~~Ci~~~~~-------~~~~~CP~Cr~~~ 123 (150)
T 1z6u_A 79 FMCVCCQELVYQPVT----TECFHNVCKDCLQRSFK-------AQVFSCPACRHDL 123 (150)
T ss_dssp TBCTTTSSBCSSEEE----CTTSCEEEHHHHHHHHH-------TTCCBCTTTCCBC
T ss_pred CEeecCChhhcCCEE----cCCCCchhHHHHHHHHH-------hCCCcCCCCCccC
Confidence 379999887653222 48999999999875432 1223566665443
No 208
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=41.24 E-value=11 Score=38.45 Aligned_cols=43 Identities=23% Similarity=0.563 Sum_probs=30.4
Q ss_pred CccccccCccccCccccccccccCce-eccCCCCCcEecccCCCCCceecccchHHHHHH
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDI-FCDKCTHGRIALTADANAQPVRVCDRCMVGVID 486 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~V-fC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~~ 486 (492)
...|.+|...|.... .-.||++ ||..|.... +.|-.|...+..
T Consensus 295 ~~~C~IC~~~~~~~v----~lpCgH~~fC~~C~~~~------------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKEVSVV----FIPCGHLVVCQECAPSL------------RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSBCCEE----EETTCCEEECTTTGGGC------------SBCTTTCCBCCE
T ss_pred CCCCCccCCcCCceE----EcCCCChhHhHHHHhcC------------CcCCCCCCCccC
Confidence 357999988775322 2379999 999997732 678888766543
No 209
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=41.21 E-value=19 Score=26.74 Aligned_cols=13 Identities=46% Similarity=0.971 Sum_probs=10.6
Q ss_pred CccccccCccccC
Q 011140 428 VSKCTACGTDFSA 440 (492)
Q Consensus 428 v~~C~~C~~~Fs~ 440 (492)
.-.|..|++.|..
T Consensus 18 ~~~C~~C~~~f~~ 30 (77)
T 2cot_A 18 RYKCDECGKSFSH 30 (77)
T ss_dssp SSBCSSSCCBCSC
T ss_pred CEECCCCCcccCC
Confidence 4579999999975
No 210
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=41.12 E-value=11 Score=30.50 Aligned_cols=27 Identities=22% Similarity=0.593 Sum_probs=18.3
Q ss_pred CccccccCccccCcccc----ccccccCceecc
Q 011140 428 VSKCTACGTDFSAFVRK----HHCRNCGDIFCD 456 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RR----HHCR~CG~VfC~ 456 (492)
...|..|++. .+.|. -||+.||+.|-.
T Consensus 26 ky~C~fCgk~--~vkR~a~GIW~C~~C~~~~AG 56 (72)
T 3jyw_9 26 RYDCSFCGKK--TVKRGAAGIWTCSCCKKTVAG 56 (72)
T ss_dssp CBCCSSCCSS--CBSBCSSSCBCCSSSCCCCCC
T ss_pred CccCCCCCCc--eeEecCCCeEECCCCCCEEeC
Confidence 3479999863 34443 489999988743
No 211
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=41.07 E-value=9.4 Score=31.67 Aligned_cols=27 Identities=33% Similarity=0.880 Sum_probs=18.9
Q ss_pred ccccccCccccCcccc----ccccccCceeccC
Q 011140 429 SKCTACGTDFSAFVRK----HHCRNCGDIFCDK 457 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~RR----HHCR~CG~VfC~k 457 (492)
..|..|++. .+.|. -||+.||..|-.-
T Consensus 36 y~CpfCGk~--~vkR~a~GIW~C~kCg~~~AGG 66 (83)
T 3j21_i 36 HTCPVCGRK--AVKRISTGIWQCQKCGATFAGG 66 (83)
T ss_dssp BCCSSSCSS--CEEEEETTEEEETTTCCEEECC
T ss_pred cCCCCCCCc--eeEecCcCeEEcCCCCCEEeCC
Confidence 479999874 34443 4899999987443
No 212
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=40.91 E-value=7.4 Score=28.07 Aligned_cols=12 Identities=17% Similarity=0.753 Sum_probs=9.5
Q ss_pred ccccccCccccC
Q 011140 429 SKCTACGTDFSA 440 (492)
Q Consensus 429 ~~C~~C~~~Fs~ 440 (492)
-.|..|++.|..
T Consensus 11 ~~C~~C~k~f~~ 22 (66)
T 2drp_A 11 YRCKVCSRVYTH 22 (66)
T ss_dssp EECTTTCCEESS
T ss_pred eECCCCcchhCC
Confidence 368889988875
No 213
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=39.38 E-value=6.5 Score=32.75 Aligned_cols=51 Identities=22% Similarity=0.623 Sum_probs=34.5
Q ss_pred CCccccccCccccCc---cccccccccCceeccCCCCCcEecccCCCCCceecccchHHHHH
Q 011140 427 AVSKCTACGTDFSAF---VRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGVI 485 (492)
Q Consensus 427 ~v~~C~~C~~~Fs~~---~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~ 485 (492)
+...|.+|...|... .+.-..-.||.+||..|....+. ..+.|-.|...+.
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~--------~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK--------NANTCPTCRKKIN 124 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHH--------HCSBCTTTCCBCC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHH--------cCCCCCCCCCcCC
Confidence 356899999888753 22234568999999999875431 2346777765553
No 214
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.08 E-value=2.2 Score=33.31 Aligned_cols=41 Identities=24% Similarity=0.579 Sum_probs=28.0
Q ss_pred cccccCccccCccccccccccCce-eccCCCCCcEecccCCCCCceecccchHHHHHH
Q 011140 430 KCTACGTDFSAFVRKHHCRNCGDI-FCDKCTHGRIALTADANAQPVRVCDRCMVGVID 486 (492)
Q Consensus 430 ~C~~C~~~Fs~~~RRHHCR~CG~V-fC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~~ 486 (492)
.|.+|...|... --..||++ ||..|.. ..+.|-.|...+..
T Consensus 27 ~C~IC~~~~~~~----~~~pCgH~~~C~~C~~------------~~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 27 LCKICMDRNIAI----VFVPCGHLVTCKQCAE------------AVDKCPMCYTVITF 68 (75)
T ss_dssp SCSSSCSSCCCB----CCSSSCCCCBCHHHHH------------HCSBCTTTCCBCCC
T ss_pred CCCcCCCCCCCE----EEecCCCHHHHHHHhh------------CCCCCccCCceecC
Confidence 699997766432 22479999 9999973 12567777665544
No 215
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=38.91 E-value=12 Score=31.62 Aligned_cols=27 Identities=30% Similarity=0.656 Sum_probs=19.0
Q ss_pred ccccccCccccCccc----cccccccCceeccC
Q 011140 429 SKCTACGTDFSAFVR----KHHCRNCGDIFCDK 457 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~R----RHHCR~CG~VfC~k 457 (492)
..|..|++. .+.| --||+.||..|-.-
T Consensus 37 y~CpfCgk~--~vkR~a~GIW~C~~Cg~~~AGG 67 (92)
T 3iz5_m 37 YFCEFCGKF--AVKRKAVGIWGCKDCGKVKAGG 67 (92)
T ss_dssp BCCTTTCSS--CBEEEETTEEECSSSCCEEECC
T ss_pred ccCcccCCC--eeEecCcceEEcCCCCCEEeCC
Confidence 479999874 3444 34899999988544
No 216
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=38.25 E-value=8.8 Score=33.71 Aligned_cols=31 Identities=19% Similarity=0.429 Sum_probs=20.6
Q ss_pred CccccccCc-cccC-ccccccccccCceeccCC
Q 011140 428 VSKCTACGT-DFSA-FVRKHHCRNCGDIFCDKC 458 (492)
Q Consensus 428 v~~C~~C~~-~Fs~-~~RRHHCR~CG~VfC~kC 458 (492)
...|..|++ .+.. -....||+.||.+|-.--
T Consensus 60 kytCPfCGk~~vKR~avGIW~C~~Cgk~fAGGA 92 (116)
T 3cc2_Z 60 DHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGS 92 (116)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTTCCEEECCS
T ss_pred CCcCCCCCCceeEecCceeEECCCCCCEEECCC
Confidence 348999986 2211 123589999999986543
No 217
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=38.20 E-value=9.1 Score=30.37 Aligned_cols=33 Identities=21% Similarity=0.568 Sum_probs=22.9
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcE
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI 463 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri 463 (492)
.-.|.+|...|..- ..-..||+.||..|....+
T Consensus 13 ~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~ 45 (92)
T 3ztg_A 13 ELLCLICKDIMTDA---VVIPCCGNSYCDECIRTAL 45 (92)
T ss_dssp TTEETTTTEECSSC---EECTTTCCEECHHHHHHHH
T ss_pred CCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHH
Confidence 34799998877532 1222399999999987543
No 218
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=37.81 E-value=9.1 Score=31.55 Aligned_cols=31 Identities=19% Similarity=0.359 Sum_probs=22.2
Q ss_pred ccccccCc--cccCccccccccccCceeccCCC
Q 011140 429 SKCTACGT--DFSAFVRKHHCRNCGDIFCDKCT 459 (492)
Q Consensus 429 ~~C~~C~~--~Fs~~~RRHHCR~CG~VfC~kCS 459 (492)
..|..|+. .|..-.-..+|..||..|..---
T Consensus 28 y~Cp~CG~~~v~r~atGiW~C~~Cg~~~aggay 60 (83)
T 1vq8_Z 28 HACPNCGEDRVDRQGTGIWQCSYCDYKFTGGSY 60 (83)
T ss_dssp EECSSSCCEEEEEEETTEEEETTTCCEEECCSS
T ss_pred CcCCCCCCcceeccCCCeEECCCCCCEecCCEe
Confidence 47999986 33334557899999999866533
No 219
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=37.00 E-value=14 Score=29.49 Aligned_cols=50 Identities=20% Similarity=0.432 Sum_probs=31.5
Q ss_pred CCccccccCccccCcccc-ccccccCceeccCCCCCcEecccCCCCCceecccchHHHH
Q 011140 427 AVSKCTACGTDFSAFVRK-HHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGV 484 (492)
Q Consensus 427 ~v~~C~~C~~~Fs~~~RR-HHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L 484 (492)
+...|.+|-..|+....+ .-| .||+.||..|....+. .....|-.|...+
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl~~~~~-------~~~~~CP~CR~~~ 60 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPC-TCGYQICRFCWHRIRT-------DENGLCPACRKPY 60 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHHHHHTT-------SSCSBCTTTCCBC
T ss_pred cCCcCCccCccCcccccccccc-CCCCCcCHHHHHHHHh-------cCCCCCCCCCCcc
Confidence 345799999888643222 224 6999999999764321 1235677776544
No 220
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=36.92 E-value=12 Score=25.41 Aligned_cols=13 Identities=31% Similarity=0.774 Sum_probs=10.0
Q ss_pred ccccccCccccCc
Q 011140 429 SKCTACGTDFSAF 441 (492)
Q Consensus 429 ~~C~~C~~~Fs~~ 441 (492)
-.|..|++.|...
T Consensus 13 ~~C~~C~k~f~~~ 25 (48)
T 2epr_A 13 VACEICGKIFRDV 25 (48)
T ss_dssp EEETTTTEEESSH
T ss_pred eeCCCCCcccCCH
Confidence 4688999988753
No 221
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=36.21 E-value=8.3 Score=33.02 Aligned_cols=55 Identities=20% Similarity=0.451 Sum_probs=29.5
Q ss_pred cccccCccccCccccccccccCce-----eccCCCCCcEecccCCCCCceecccchHHHHHH
Q 011140 430 KCTACGTDFSAFVRKHHCRNCGDI-----FCDKCTHGRIALTADANAQPVRVCDRCMVGVID 486 (492)
Q Consensus 430 ~C~~C~~~Fs~~~RRHHCR~CG~V-----fC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L~~ 486 (492)
.|..|+.........+||..|.+- +|-.|-..-..|-.=+ ---=.|..|.+.+++
T Consensus 34 ~CP~Cq~eL~~~g~~~hC~~C~~~f~~~a~CPdC~q~LevLkACG--AvdYFC~~chgLiSK 93 (101)
T 2jne_A 34 HCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQVLKACG--AVDYFCQHGHGLISK 93 (101)
T ss_dssp BCSSSCSBEEEETTEEEETTTCCEEEEEEECTTTCSBCEEEEETT--EEEEEETTTTEEECT
T ss_pred cCccCCCcceecCCEEECccccchhhccccCcchhhHHHHHHHhc--CcchhhccCCceeec
Confidence 677777666655566667777764 5666655332222211 012346666655543
No 222
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=35.53 E-value=11 Score=31.75 Aligned_cols=23 Identities=43% Similarity=1.024 Sum_probs=18.0
Q ss_pred cccccCccccCccc--cccccccCce
Q 011140 430 KCTACGTDFSAFVR--KHHCRNCGDI 453 (492)
Q Consensus 430 ~C~~C~~~Fs~~~R--RHHCR~CG~V 453 (492)
.|. |+.+...+.| ++||++||..
T Consensus 50 kC~-C~~Rt~sl~r~P~~~C~~Cg~~ 74 (92)
T 2kwq_A 50 KCP-CGNRTISLDRLPKKHCSTCGLF 74 (92)
T ss_dssp ECT-TSCEEEESSSSCCSCCTTTCSC
T ss_pred ECC-CCCceeEeeeCCCCCCCCCCCC
Confidence 686 9876665565 8899999986
No 223
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=35.31 E-value=15 Score=31.07 Aligned_cols=27 Identities=22% Similarity=0.604 Sum_probs=18.9
Q ss_pred ccccccCccccCcccc----ccccccCceeccC
Q 011140 429 SKCTACGTDFSAFVRK----HHCRNCGDIFCDK 457 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~RR----HHCR~CG~VfC~k 457 (492)
..|..|++. .+.|. -||+.||..|-.-
T Consensus 37 y~CpfCgk~--~vkR~a~GIW~C~~C~~~~AGG 67 (92)
T 3izc_m 37 YDCSFCGKK--TVKRGAAGIWTCSCCKKTVAGG 67 (92)
T ss_dssp CCCSSSCSS--CCEEEETTEEECTTTCCEEECC
T ss_pred CcCCCCCCc--eeeecccceEEcCCCCCEEeCC
Confidence 479999863 34443 4899999988543
No 224
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=35.24 E-value=9 Score=28.72 Aligned_cols=29 Identities=28% Similarity=0.824 Sum_probs=22.5
Q ss_pred ccccccCccccCccccccccccCce-eccCCCC
Q 011140 429 SKCTACGTDFSAFVRKHHCRNCGDI-FCDKCTH 460 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~RRHHCR~CG~V-fC~kCS~ 460 (492)
-.|..|++. +.+|.||..|-.. +|..|-.
T Consensus 7 ~~Cd~C~~~---ig~R~~C~~C~dyDLC~~C~~ 36 (52)
T 1tot_A 7 YTCNECKHH---VETRWHCTVCEDYDLCINCYN 36 (52)
T ss_dssp EEETTTTEE---ESSEEEESSSSSCEECHHHHH
T ss_pred EECCCCCCC---CcceEEcCCCCCchhHHHHHh
Confidence 479999986 3678999999765 7877754
No 225
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=34.83 E-value=11 Score=31.70 Aligned_cols=30 Identities=27% Similarity=0.686 Sum_probs=22.3
Q ss_pred ccccccCccccCccccccccccCceeccCCCCCc
Q 011140 429 SKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGR 462 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~r 462 (492)
-.|.+|...|..-.. -.||.+||..|....
T Consensus 19 ~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~ 48 (118)
T 3hct_A 19 YECPICLMALREAVQ----TPCGHRFCKACIIKS 48 (118)
T ss_dssp GBCTTTCSBCSSEEE----CTTSCEEEHHHHHHH
T ss_pred CCCCcCChhhcCeEE----CCcCChhhHHHHHHH
Confidence 479999887754322 369999999998654
No 226
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=34.66 E-value=13 Score=31.34 Aligned_cols=56 Identities=18% Similarity=0.347 Sum_probs=36.4
Q ss_pred CCcccCcCCccccccCccccCcc----------cc----ccccccCceeccCCCCCcEecccCCCCCceecccchHHH
Q 011140 420 DHWVPDEAVSKCTACGTDFSAFV----------RK----HHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVG 483 (492)
Q Consensus 420 p~WvpD~~v~~C~~C~~~Fs~~~----------RR----HHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~ 483 (492)
..|.-|.+...|.+|...|...- .. ..--.||++|+..|....+. ...+|-.|...
T Consensus 29 ~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~--------~~~~CP~Cr~~ 98 (106)
T 3dpl_R 29 ALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK--------TRQVCPLDNRE 98 (106)
T ss_dssp EEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT--------TCSBCSSSCSB
T ss_pred eEeecCCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH--------cCCcCcCCCCc
Confidence 46776777789999998887431 00 11247999999999875521 13457666543
No 227
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=34.16 E-value=20 Score=27.52 Aligned_cols=11 Identities=55% Similarity=1.159 Sum_probs=6.0
Q ss_pred cccccCccccC
Q 011140 430 KCTACGTDFSA 440 (492)
Q Consensus 430 ~C~~C~~~Fs~ 440 (492)
.|..|++.|..
T Consensus 10 ~C~~C~~~f~~ 20 (96)
T 2dmd_A 10 KCEVCGKCFSR 20 (96)
T ss_dssp CBTTTTBCCCC
T ss_pred ECCCCCCccCC
Confidence 45566655543
No 228
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=34.14 E-value=7.1 Score=32.97 Aligned_cols=52 Identities=21% Similarity=0.439 Sum_probs=35.7
Q ss_pred cCCccccccCccccCcc---ccccccccCceeccCCCCCcEecccCCCCCceecccchHHHH
Q 011140 426 EAVSKCTACGTDFSAFV---RKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGV 484 (492)
Q Consensus 426 ~~v~~C~~C~~~Fs~~~---RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L 484 (492)
.....|.+|+-...+.. --.-|..|+.-+|..|..+... +-..+|..|....
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErk-------eG~q~CpqCktrY 68 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERR-------EGTQNCPQCKTRY 68 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHH-------TSCSSCTTTCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHh-------ccCccccccCCcc
Confidence 34679999998766543 2456999999999999887532 2335666665443
No 229
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.71 E-value=6.7 Score=28.47 Aligned_cols=29 Identities=28% Similarity=0.692 Sum_probs=21.0
Q ss_pred ccccccCccccCc-----cccccccccCceeccC
Q 011140 429 SKCTACGTDFSAF-----VRKHHCRNCGDIFCDK 457 (492)
Q Consensus 429 ~~C~~C~~~Fs~~-----~RRHHCR~CG~VfC~k 457 (492)
-.|..|++.|... .+.+.|..||+.|-..
T Consensus 19 ~~C~~C~k~f~~~~~l~~~~~~~C~~C~~~f~~~ 52 (73)
T 2ctu_A 19 QKCSKCGIIFIRRSTLSRRKTPMCEKCRKDSCQE 52 (73)
T ss_dssp EECSSSCCEEECCCCCCCSSSCCCHHHHHTCSCC
T ss_pred eeCCcccchhCCHHHhCcCCCCCCCCCChhhcCH
Confidence 4789999888643 4567888888877443
No 230
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=33.60 E-value=18 Score=27.01 Aligned_cols=12 Identities=25% Similarity=0.783 Sum_probs=9.5
Q ss_pred ccccccCccccC
Q 011140 429 SKCTACGTDFSA 440 (492)
Q Consensus 429 ~~C~~C~~~Fs~ 440 (492)
-.|..|++.|..
T Consensus 16 ~~C~~C~~~f~~ 27 (86)
T 1x6h_A 16 YACSHCDKTFRQ 27 (86)
T ss_dssp EECSSSSCEESS
T ss_pred CcCCCCCCccCC
Confidence 468889888875
No 231
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=33.03 E-value=16 Score=29.79 Aligned_cols=31 Identities=35% Similarity=0.891 Sum_probs=24.8
Q ss_pred cccccCccccCccccccccccCc----eeccCCCCC
Q 011140 430 KCTACGTDFSAFVRKHHCRNCGD----IFCDKCTHG 461 (492)
Q Consensus 430 ~C~~C~~~Fs~~~RRHHCR~CG~----VfC~kCS~~ 461 (492)
.|..|++ ..+..+|.+|..|-. -+|..|-..
T Consensus 23 ~Cd~C~~-~pI~G~RykC~~C~d~~~yDLC~~C~~~ 57 (82)
T 2fc7_A 23 KCDNCGI-EPIQGVRWHCQDCPPEMSLDFCDSCSDC 57 (82)
T ss_dssp CCSSSCC-SSEESCEEEESSSCSSSCCEEEGGGTTC
T ss_pred CCCCCCC-CcceeceEECCcCCCCcceecHHHHHhC
Confidence 7999975 345668999999986 599999765
No 232
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=32.69 E-value=19 Score=26.53 Aligned_cols=12 Identities=33% Similarity=0.869 Sum_probs=8.5
Q ss_pred ccccccCccccC
Q 011140 429 SKCTACGTDFSA 440 (492)
Q Consensus 429 ~~C~~C~~~Fs~ 440 (492)
-.|..|++.|..
T Consensus 30 ~~C~~C~~~f~~ 41 (82)
T 2kmk_A 30 YPCQYCGKRFHQ 41 (82)
T ss_dssp EECSSSCCEESS
T ss_pred eeCCcCChhhCC
Confidence 367788887765
No 233
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=32.40 E-value=16 Score=34.28 Aligned_cols=32 Identities=6% Similarity=-0.139 Sum_probs=23.0
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcE
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI 463 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri 463 (492)
.-.|.+|..-|. .-..-.||++||..|....+
T Consensus 208 ~~~c~i~~~~~~----dPv~~~~gh~f~~~~i~~~~ 239 (281)
T 2c2l_A 208 YLCGKISFELMR----EPCITPSGITYDRKDIEEHL 239 (281)
T ss_dssp TTBCTTTCSBCS----SEEECSSCCEEETTHHHHHH
T ss_pred ccCCcCcCCHhc----CCeECCCCCEECHHHHHHHH
Confidence 347889977554 33445699999999987543
No 234
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=32.37 E-value=20 Score=28.21 Aligned_cols=25 Identities=28% Similarity=0.761 Sum_probs=18.7
Q ss_pred CccccccCccccCcc-ccccccccCc
Q 011140 428 VSKCTACGTDFSAFV-RKHHCRNCGD 452 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~-RRHHCR~CG~ 452 (492)
.-.|..|+..|.+-. -...|+.||.
T Consensus 21 ~Y~C~~Cg~~~~l~~~~~iRC~~CG~ 46 (63)
T 3h0g_L 21 IYLCADCGARNTIQAKEVIRCRECGH 46 (63)
T ss_dssp CCBCSSSCCBCCCCSSSCCCCSSSCC
T ss_pred EEECCCCCCeeecCCCCceECCCCCc
Confidence 358999999998653 3567888875
No 235
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=32.33 E-value=20 Score=28.14 Aligned_cols=11 Identities=27% Similarity=0.815 Sum_probs=6.2
Q ss_pred cccccCccccC
Q 011140 430 KCTACGTDFSA 440 (492)
Q Consensus 430 ~C~~C~~~Fs~ 440 (492)
.|..|++.|..
T Consensus 47 ~C~~C~~~f~~ 57 (106)
T 2ee8_A 47 TCDICHKAFRR 57 (106)
T ss_dssp BCSSSCCBCSC
T ss_pred CCCCccchhCC
Confidence 46666665543
No 236
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=32.17 E-value=18 Score=26.20 Aligned_cols=27 Identities=22% Similarity=0.653 Sum_probs=16.7
Q ss_pred CccccccCc-c--ccCccccccccccCcee
Q 011140 428 VSKCTACGT-D--FSAFVRKHHCRNCGDIF 454 (492)
Q Consensus 428 v~~C~~C~~-~--Fs~~~RRHHCR~CG~Vf 454 (492)
...|..|+. . |..-.....|..||.++
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 347999976 4 32233456677777766
No 237
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=32.09 E-value=14 Score=28.56 Aligned_cols=23 Identities=30% Similarity=0.788 Sum_probs=16.5
Q ss_pred CccccccCccccCccccccccccCc
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGD 452 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~ 452 (492)
...|+.|..... .|-..||+||.
T Consensus 19 k~ICrkC~ARnp--~~A~~CRKCg~ 41 (56)
T 2ayj_A 19 KKVCRKCGALNP--IRATKCRRCHS 41 (56)
T ss_dssp CEEETTTCCEEC--TTCSSCTTTCC
T ss_pred hhhhccccCcCC--cccccccCCCC
Confidence 457999987553 45788998873
No 238
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=31.79 E-value=17 Score=30.82 Aligned_cols=8 Identities=50% Similarity=1.273 Sum_probs=3.7
Q ss_pred cccccccC
Q 011140 444 KHHCRNCG 451 (492)
Q Consensus 444 RHHCR~CG 451 (492)
|+-|-.||
T Consensus 31 K~~Ca~CG 38 (94)
T 4a18_A 31 KLRCAACG 38 (94)
T ss_dssp TTEESSSC
T ss_pred cccccccC
Confidence 44444444
No 239
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=31.07 E-value=23 Score=26.60 Aligned_cols=25 Identities=24% Similarity=0.537 Sum_probs=18.4
Q ss_pred ccccccCccccCcc----ccccccccCce
Q 011140 429 SKCTACGTDFSAFV----RKHHCRNCGDI 453 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~----RRHHCR~CG~V 453 (492)
-.|+.|++.|+... --.+|-.||.-
T Consensus 4 Y~C~rCg~~fs~~el~~lP~IrCpyCGyr 32 (48)
T 4ayb_P 4 YRCGKCWKTFTDEQLKVLPGVRCPYCGYK 32 (48)
T ss_dssp -CCCCTTTTCCCCCSCCCSSSCCTTTCCS
T ss_pred EEeeccCCCccHHHHhhCCCcccCccCcE
Confidence 37999999999743 25678888863
No 240
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=31.06 E-value=21 Score=26.97 Aligned_cols=12 Identities=33% Similarity=0.772 Sum_probs=8.7
Q ss_pred ccccccCccccC
Q 011140 429 SKCTACGTDFSA 440 (492)
Q Consensus 429 ~~C~~C~~~Fs~ 440 (492)
-.|..|++.|..
T Consensus 35 ~~C~~C~~~f~~ 46 (90)
T 1a1h_A 35 FQCRICMRNFSR 46 (90)
T ss_dssp EECTTTCCEESC
T ss_pred ccCCCCCcccCC
Confidence 368888887775
No 241
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=30.89 E-value=21 Score=27.32 Aligned_cols=11 Identities=36% Similarity=0.926 Sum_probs=8.9
Q ss_pred cccccCccccC
Q 011140 430 KCTACGTDFSA 440 (492)
Q Consensus 430 ~C~~C~~~Fs~ 440 (492)
.|..|++.|..
T Consensus 5 ~C~~C~k~f~~ 15 (88)
T 1llm_C 5 QCRICMRNFSR 15 (88)
T ss_dssp ECTTTCCEESC
T ss_pred cCCCCCCccCC
Confidence 68888888875
No 242
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=30.48 E-value=19 Score=30.85 Aligned_cols=11 Identities=27% Similarity=0.685 Sum_probs=7.7
Q ss_pred cccccCccccC
Q 011140 430 KCTACGTDFSA 440 (492)
Q Consensus 430 ~C~~C~~~Fs~ 440 (492)
.|..|++.|..
T Consensus 52 ~C~~C~k~F~~ 62 (133)
T 2lt7_A 52 PCRYCEKVFPL 62 (133)
T ss_dssp ECSSSSCEESS
T ss_pred eCCccCeeccc
Confidence 57777777765
No 243
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=30.27 E-value=14 Score=32.47 Aligned_cols=45 Identities=20% Similarity=0.557 Sum_probs=30.3
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHH
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVG 483 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~ 483 (492)
.-.|.+|...|..-.. -.||.+||..|....+. .....|-.|...
T Consensus 31 ~~~C~IC~~~~~~pv~----~~CgH~FC~~Ci~~~~~-------~~~~~CP~Cr~~ 75 (141)
T 3knv_A 31 KYLCSACRNVLRRPFQ----AQCGHRYCSFCLASILS-------SGPQNCAACVHE 75 (141)
T ss_dssp GGBCTTTCSBCSSEEE----CTTSCEEEHHHHHHHGG-------GSCEECHHHHHT
T ss_pred CcCCCCCChhhcCcEE----CCCCCccCHHHHHHHHh-------cCCCCCCCCCCc
Confidence 3479999876653322 38999999999886431 123467777664
No 244
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=30.26 E-value=14 Score=30.70 Aligned_cols=30 Identities=23% Similarity=0.607 Sum_probs=22.2
Q ss_pred ccccccCccccCccccccccccCceeccCCCCCc
Q 011140 429 SKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGR 462 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~r 462 (492)
..|.+|...|..-.. -.||.+||..|....
T Consensus 24 ~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~ 53 (116)
T 1rmd_A 24 ISCQICEHILADPVE----TSCKHLFCRICILRC 53 (116)
T ss_dssp TBCTTTCSBCSSEEE----CTTSCEEEHHHHHHH
T ss_pred CCCCCCCcHhcCcEE----cCCCCcccHHHHHHH
Confidence 479999887754322 479999999997644
No 245
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=30.19 E-value=19 Score=23.88 Aligned_cols=12 Identities=33% Similarity=0.913 Sum_probs=9.5
Q ss_pred ccccccCccccC
Q 011140 429 SKCTACGTDFSA 440 (492)
Q Consensus 429 ~~C~~C~~~Fs~ 440 (492)
-.|..|++.|..
T Consensus 11 ~~C~~C~k~f~~ 22 (45)
T 2epq_A 11 YSCPVCGLRFKR 22 (45)
T ss_dssp SEETTTTEECSC
T ss_pred CcCCCCCcccCC
Confidence 368889988875
No 246
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=29.91 E-value=17 Score=28.19 Aligned_cols=20 Identities=30% Similarity=0.941 Sum_probs=14.2
Q ss_pred CccccccCccccCcccccc-ccccC
Q 011140 428 VSKCTACGTDFSAFVRKHH-CRNCG 451 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHH-CR~CG 451 (492)
...|..|+. +.+.|| |..||
T Consensus 30 l~~c~~cGe----~~~~H~vc~~CG 50 (60)
T 3v2d_5 30 LVPCPECKA----MKPPHTVCPECG 50 (60)
T ss_dssp CEECTTTCC----EECTTSCCTTTC
T ss_pred eeECCCCCC----eecceEEcCCCC
Confidence 568999987 455555 77777
No 247
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=29.70 E-value=14 Score=31.82 Aligned_cols=29 Identities=28% Similarity=0.602 Sum_probs=19.6
Q ss_pred CccccccCccccCccc----cccccccCceeccCC
Q 011140 428 VSKCTACGTDFSAFVR----KHHCRNCGDIFCDKC 458 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~R----RHHCR~CG~VfC~kC 458 (492)
...|..|++. .+.| --||+.||..|-.--
T Consensus 36 ky~CpfCgk~--~vKR~a~GIW~C~kCg~~~AGGA 68 (103)
T 4a17_Y 36 KYGCPFCGKV--AVKRAAVGIWKCKPCKKIIAGGA 68 (103)
T ss_dssp CEECTTTCCE--EEEEEETTEEEETTTTEEEECCS
T ss_pred CCCCCCCCCc--eeeecCcceEEcCCCCCEEeCCc
Confidence 3479999863 3444 348999999885543
No 248
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=29.29 E-value=17 Score=29.15 Aligned_cols=36 Identities=22% Similarity=0.512 Sum_probs=23.5
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEe
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIA 464 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~ 464 (492)
...|.+|-..|..-. -..-..||+.||..|....+.
T Consensus 5 ~~~C~IC~~~~~~~~-~~~l~~CgH~FC~~Cl~~~~~ 40 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQ-MTTIAQCQCIFCTLCLKQYVE 40 (94)
T ss_dssp BCCCSSSCCCCBGGG-EEEETTTTEEEEHHHHHHHHH
T ss_pred CcCCcccCccccccc-ceEcCCCCCcccHHHHHHHHH
Confidence 347999977664221 111236999999999886554
No 249
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=29.23 E-value=20 Score=30.67 Aligned_cols=26 Identities=27% Similarity=0.852 Sum_probs=19.7
Q ss_pred CccccccCccccCccccccccccCceeccC
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDK 457 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~k 457 (492)
...|..|...=++. -|-.||.|.|.+
T Consensus 24 ~~~C~~C~~~~~~W----~CL~CG~vgCgr 49 (109)
T 3c5k_A 24 TQPCGDCGTIQENW----VCLSCYQVYCGR 49 (109)
T ss_dssp TCCCTTTCCCSSEE----EETTTCCEEECT
T ss_pred CCcCccccCCCCee----eeeecCccccCC
Confidence 35799998754433 399999999975
No 250
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=29.11 E-value=23 Score=29.31 Aligned_cols=27 Identities=22% Similarity=0.552 Sum_probs=19.8
Q ss_pred Cccccc--cCccccCccccccccccCceeccC
Q 011140 428 VSKCTA--CGTDFSAFVRKHHCRNCGDIFCDK 457 (492)
Q Consensus 428 v~~C~~--C~~~Fs~~~RRHHCR~CG~VfC~k 457 (492)
...|.. |++. .++ -.+|+.||.+||.+
T Consensus 25 ~~~C~~~~Ck~~-~~l--~f~C~~C~~~FC~~ 53 (86)
T 1wfe_A 25 SYSCSFKGCTDV-ELV--AVICPYCEKNFCLR 53 (86)
T ss_dssp CEECCSTTCCCE-ESS--CEECTTTCCEECGG
T ss_pred CCCCCCcCCCCC-Ccc--ceECCCCCcccccc
Confidence 347887 9865 222 46999999999965
No 251
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=28.94 E-value=21 Score=28.91 Aligned_cols=28 Identities=29% Similarity=0.615 Sum_probs=18.7
Q ss_pred CccccccCccccCccc----cccccccCceeccC
Q 011140 428 VSKCTACGTDFSAFVR----KHHCRNCGDIFCDK 457 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~R----RHHCR~CG~VfC~k 457 (492)
...|..|++. .+.| --+|++||++|=.-
T Consensus 27 ky~C~fCgk~--~vkR~a~GIW~C~~C~~~~AGG 58 (73)
T 1ffk_W 27 KYKCPVCGFP--KLKRASTSIWVCGHCGYKIAGG 58 (73)
T ss_pred CccCCCCCCc--eeEEEEeEEEECCCCCcEEECC
Confidence 4479999862 3333 36799999987443
No 252
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=28.77 E-value=23 Score=29.81 Aligned_cols=11 Identities=36% Similarity=0.785 Sum_probs=5.3
Q ss_pred cccccCccccC
Q 011140 430 KCTACGTDFSA 440 (492)
Q Consensus 430 ~C~~C~~~Fs~ 440 (492)
.|..|++.|..
T Consensus 64 ~C~~C~~~f~~ 74 (155)
T 2rpc_A 64 ECPREGKSFKA 74 (155)
T ss_dssp TCTTSSCCCSS
T ss_pred CCCCcccccCC
Confidence 35555555543
No 253
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=28.66 E-value=12 Score=31.16 Aligned_cols=34 Identities=26% Similarity=0.737 Sum_probs=23.2
Q ss_pred CccccccCccccCc---cccccccccCceeccCCCCC
Q 011140 428 VSKCTACGTDFSAF---VRKHHCRNCGDIFCDKCTHG 461 (492)
Q Consensus 428 v~~C~~C~~~Fs~~---~RRHHCR~CG~VfC~kCS~~ 461 (492)
...|.+|...|..- .+.-.--.||.+||..|...
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~ 43 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD 43 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHH
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHH
Confidence 34799998877543 12224557999999988754
No 254
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=28.64 E-value=26 Score=26.61 Aligned_cols=26 Identities=27% Similarity=0.697 Sum_probs=15.7
Q ss_pred CccccccCc-cc-cCccccccccccCce
Q 011140 428 VSKCTACGT-DF-SAFVRKHHCRNCGDI 453 (492)
Q Consensus 428 v~~C~~C~~-~F-s~~~RRHHCR~CG~V 453 (492)
...|..|+. .| ....-|++|..||..
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCGRCGYT 45 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECTTTCCC
T ss_pred cccCcCCCCceeEeccCCEEECCCCCCE
Confidence 457999986 23 111236677777765
No 255
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=27.61 E-value=26 Score=27.74 Aligned_cols=11 Identities=36% Similarity=1.044 Sum_probs=7.4
Q ss_pred cccccCccccC
Q 011140 430 KCTACGTDFSA 440 (492)
Q Consensus 430 ~C~~C~~~Fs~ 440 (492)
.|..|++.|..
T Consensus 39 ~C~~C~~~f~~ 49 (110)
T 2csh_A 39 GCGVCGKKFKM 49 (110)
T ss_dssp ECTTTSCEESS
T ss_pred cCCCCCcccCC
Confidence 57777776664
No 256
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=27.45 E-value=28 Score=27.77 Aligned_cols=27 Identities=33% Similarity=1.077 Sum_probs=20.4
Q ss_pred ccccccCccccCcccccccccc-CceeccCCCC
Q 011140 429 SKCTACGTDFSAFVRKHHCRNC-GDIFCDKCTH 460 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~RRHHCR~C-G~VfC~kCS~ 460 (492)
.-|.+|...=+ ..|.-| |.+||..|-.
T Consensus 9 pWC~ICneDAt-----lrC~gCdgDLYC~rC~r 36 (67)
T 2d8v_A 9 PWCCICNEDAT-----LRCAGCDGDLYCARCFR 36 (67)
T ss_dssp SSCTTTCSCCC-----EEETTTTSEEECSSHHH
T ss_pred CeeEEeCCCCe-----EEecCCCCceehHHHHH
Confidence 34888887532 568899 9999999964
No 257
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=27.39 E-value=32 Score=26.14 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=14.3
Q ss_pred CccccccCc-ccc--CccccccccccCcee
Q 011140 428 VSKCTACGT-DFS--AFVRKHHCRNCGDIF 454 (492)
Q Consensus 428 v~~C~~C~~-~Fs--~~~RRHHCR~CG~Vf 454 (492)
+..|..|+. .+. .-....-|..||.|+
T Consensus 11 ~~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 11 RVTCPNHPDAILVEDYRAGDMICPECGLVV 40 (58)
T ss_dssp CCSBTTBSSSCCEECSSSCCEECTTTCCEE
T ss_pred cccCcCCCCCceeEeCCCCeEEeCCCCCEE
Confidence 347999965 322 122244466666655
No 258
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=27.07 E-value=20 Score=30.96 Aligned_cols=23 Identities=26% Similarity=0.753 Sum_probs=15.0
Q ss_pred cccccCccc-cCccccccccccCc
Q 011140 430 KCTACGTDF-SAFVRKHHCRNCGD 452 (492)
Q Consensus 430 ~C~~C~~~F-s~~~RRHHCR~CG~ 452 (492)
.|..|+..| ..+.+...|-.|+.
T Consensus 69 ~C~~CG~~F~~~~~kPsrCP~CkS 92 (105)
T 2gmg_A 69 QCRKCGFVFKAEINIPSRCPKCKS 92 (105)
T ss_dssp BBTTTCCBCCCCSSCCSSCSSSCC
T ss_pred ChhhCcCeecccCCCCCCCcCCCC
Confidence 799999888 33445555655543
No 259
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=27.03 E-value=16 Score=30.93 Aligned_cols=9 Identities=44% Similarity=1.117 Sum_probs=4.1
Q ss_pred cccccccCc
Q 011140 444 KHHCRNCGD 452 (492)
Q Consensus 444 RHHCR~CG~ 452 (492)
|+-|-.||.
T Consensus 31 K~~Ca~CGy 39 (94)
T 3iz5_l 31 KSTCSSCGY 39 (94)
T ss_dssp GTEETTTCS
T ss_pred cccccccCC
Confidence 444444443
No 260
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=27.02 E-value=23 Score=30.27 Aligned_cols=24 Identities=21% Similarity=0.569 Sum_probs=17.3
Q ss_pred ccccccCccccCccccc-cccccCc
Q 011140 429 SKCTACGTDFSAFVRKH-HCRNCGD 452 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~RRH-HCR~CG~ 452 (492)
-.|..|+..|....+.. .|-.||.
T Consensus 74 ~~C~~CG~~~e~~~~~~~~CP~Cgs 98 (119)
T 2kdx_A 74 LECKDCSHVFKPNALDYGVCEKCHS 98 (119)
T ss_dssp EECSSSSCEECSCCSTTCCCSSSSS
T ss_pred EEcCCCCCEEeCCCCCCCcCccccC
Confidence 37999999998765555 5666655
No 261
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=26.71 E-value=33 Score=26.11 Aligned_cols=11 Identities=36% Similarity=0.942 Sum_probs=7.1
Q ss_pred cccccCccccC
Q 011140 430 KCTACGTDFSA 440 (492)
Q Consensus 430 ~C~~C~~~Fs~ 440 (492)
.|..|++.|..
T Consensus 9 ~C~~C~~~f~~ 19 (95)
T 2yt9_A 9 ACEICGKIFRD 19 (95)
T ss_dssp ECSSSCCEESS
T ss_pred ECCCCCCccCC
Confidence 56677766654
No 262
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=26.49 E-value=3.3 Score=35.57 Aligned_cols=29 Identities=28% Similarity=0.767 Sum_probs=23.2
Q ss_pred ccccccCccccCccccccccccCceeccCCCC
Q 011140 429 SKCTACGTDFSAFVRKHHCRNCGDIFCDKCTH 460 (492)
Q Consensus 429 ~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~ 460 (492)
..|..|+..|....|-.=| ..+||-.|..
T Consensus 2 hfC~~C~~Pi~iygRmIPC---kHvFCydCa~ 30 (101)
T 3vk6_A 2 HFCDKCGLPIKVYGRMIPC---KHVFCYDCAI 30 (101)
T ss_dssp CBCTTTCSBCSEEEEEETT---CCEEEHHHHH
T ss_pred eecCccCCCeEEEeeeccc---cccHHHHHHH
Confidence 4699999999988887654 4499999975
No 263
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=26.39 E-value=29 Score=25.31 Aligned_cols=26 Identities=31% Similarity=0.678 Sum_probs=16.4
Q ss_pred cccc--ccCccccCcc------------ccccccccCcee
Q 011140 429 SKCT--ACGTDFSAFV------------RKHHCRNCGDIF 454 (492)
Q Consensus 429 ~~C~--~C~~~Fs~~~------------RRHHCR~CG~Vf 454 (492)
-.|. .|++.|.... +.+.|..||+.|
T Consensus 20 ~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 59 (73)
T 1f2i_G 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59 (73)
T ss_dssp EECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEE
T ss_pred cCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchh
Confidence 4786 6999997531 234466666655
No 264
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=26.31 E-value=20 Score=29.32 Aligned_cols=12 Identities=33% Similarity=0.611 Sum_probs=9.7
Q ss_pred ccccccCccccC
Q 011140 429 SKCTACGTDFSA 440 (492)
Q Consensus 429 ~~C~~C~~~Fs~ 440 (492)
-.|..|++.|..
T Consensus 75 ~~C~~C~k~f~~ 86 (129)
T 2wbt_A 75 FVCPLCLMPFSS 86 (129)
T ss_dssp EECTTTCCEESS
T ss_pred eECCCCCcccCC
Confidence 379999998875
No 265
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=25.76 E-value=22 Score=23.98 Aligned_cols=21 Identities=29% Similarity=0.906 Sum_probs=15.3
Q ss_pred cccccCccccCccccccccccCc
Q 011140 430 KCTACGTDFSAFVRKHHCRNCGD 452 (492)
Q Consensus 430 ~C~~C~~~Fs~~~RRHHCR~CG~ 452 (492)
.|..|+ +.-|.||..|..||.
T Consensus 7 ~C~~C~--~~Nfa~r~~C~~C~~ 27 (32)
T 2lk0_A 7 LCNKCC--LNNFRKRLKCFRCGA 27 (32)
T ss_dssp ECTTTC--CEEETTCCBCTTTCC
T ss_pred CcCcCc--CCcChhcceecCCCC
Confidence 466664 355778899999986
No 266
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.64 E-value=31 Score=27.49 Aligned_cols=9 Identities=0% Similarity=-0.105 Sum_probs=6.8
Q ss_pred cccccCccc
Q 011140 430 KCTACGTDF 438 (492)
Q Consensus 430 ~C~~C~~~F 438 (492)
.|..|++.|
T Consensus 52 ~C~~C~~~f 60 (115)
T 2dmi_A 52 TDNNNPKRW 60 (115)
T ss_dssp CCCCCCSCC
T ss_pred cCCCCCccc
Confidence 477888777
No 267
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=25.40 E-value=20 Score=29.68 Aligned_cols=12 Identities=17% Similarity=0.437 Sum_probs=9.6
Q ss_pred ccccccCccccC
Q 011140 429 SKCTACGTDFSA 440 (492)
Q Consensus 429 ~~C~~C~~~Fs~ 440 (492)
-.|..|++.|..
T Consensus 19 y~C~~Cgk~F~~ 30 (102)
T 2ghf_A 19 YECKYCTFQTPD 30 (102)
T ss_dssp EECSSCSCEESC
T ss_pred cCCCCCCCccCC
Confidence 479999998875
No 268
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=25.35 E-value=7.9 Score=38.42 Aligned_cols=33 Identities=15% Similarity=0.326 Sum_probs=23.8
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcE
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI 463 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri 463 (492)
.-.|.+|...|.-=.+ ...||++||..|....+
T Consensus 181 el~CPIcl~~f~DPVt---s~~CGHsFcR~cI~~~~ 213 (267)
T 3htk_C 181 ELTCPITCKPYEAPLI---SRKCNHVFDRDGIQNYL 213 (267)
T ss_dssp CSBCTTTSSBCSSEEE---ESSSCCEEEHHHHHHHS
T ss_pred eeECcCccCcccCCee---eCCCCCcccHHHHHHHH
Confidence 3479999887753222 34799999999987553
No 269
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=25.32 E-value=28 Score=32.86 Aligned_cols=37 Identities=16% Similarity=0.351 Sum_probs=20.4
Q ss_pred CCCcccCcCC-ccccccCcc-ccCc----cccccccccCceec
Q 011140 419 KDHWVPDEAV-SKCTACGTD-FSAF----VRKHHCRNCGDIFC 455 (492)
Q Consensus 419 ~p~WvpD~~v-~~C~~C~~~-Fs~~----~RRHHCR~CG~VfC 455 (492)
...|.++-.. ..|..|+.. =.++ ..-.-|..||.|+=
T Consensus 11 ~~~~~~~ln~~~~CPECGs~~t~IV~D~erGE~VCsdCGLVLE 53 (197)
T 3k1f_M 11 AGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (197)
T ss_dssp --CCSSCCCCCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCC
T ss_pred ccccccccccCeECcCCCCcCCeEEEeCCCCEEEEcCCCCCcC
Confidence 4567766654 379999872 1122 23444666666653
No 270
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=25.00 E-value=32 Score=34.46 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=19.8
Q ss_pred cccCcC-CccccccCcc-----ccCccccccccccCcee
Q 011140 422 WVPDEA-VSKCTACGTD-----FSAFVRKHHCRNCGDIF 454 (492)
Q Consensus 422 WvpD~~-v~~C~~C~~~-----Fs~~~RRHHCR~CG~Vf 454 (492)
|.++-. ...|..|+.. +..-..-.-|..||.|+
T Consensus 14 ~~~~~~~~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl 52 (345)
T 3k7a_M 14 RGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (345)
T ss_dssp ---CCCCCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCC
T ss_pred cCccccCCCcCcCCCCCCCceEEECCCCCEecCCCCeEc
Confidence 777655 5689999764 22233455688888876
No 271
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=24.68 E-value=42 Score=26.64 Aligned_cols=12 Identities=25% Similarity=0.730 Sum_probs=8.9
Q ss_pred ccccccCccccC
Q 011140 429 SKCTACGTDFSA 440 (492)
Q Consensus 429 ~~C~~C~~~Fs~ 440 (492)
-.|..|++.|..
T Consensus 36 ~~C~~C~~~f~~ 47 (124)
T 2dlq_A 36 FECPKCGKCYFR 47 (124)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCchhcC
Confidence 468888888765
No 272
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=24.64 E-value=29 Score=25.58 Aligned_cols=12 Identities=33% Similarity=0.921 Sum_probs=9.4
Q ss_pred ccccc--cCccccC
Q 011140 429 SKCTA--CGTDFSA 440 (492)
Q Consensus 429 ~~C~~--C~~~Fs~ 440 (492)
-.|.. |++.|..
T Consensus 39 ~~C~~~~C~k~f~~ 52 (79)
T 2dlk_A 39 FSCPEPACGKSFNF 52 (79)
T ss_dssp EECSCTTTCCEESS
T ss_pred eECCCCCCcCccCC
Confidence 36887 9988876
No 273
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=24.35 E-value=32 Score=29.74 Aligned_cols=66 Identities=20% Similarity=0.338 Sum_probs=31.5
Q ss_pred CCCCcccCcCC-ccccccCccccC--ccc-------cccccccCceeccCCCCCcEecccCCCCCceecccchHHHH
Q 011140 418 EKDHWVPDEAV-SKCTACGTDFSA--FVR-------KHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGV 484 (492)
Q Consensus 418 ~~p~WvpD~~v-~~C~~C~~~Fs~--~~R-------RHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L 484 (492)
..+.|-.+.+. ..|..|+..+.+ ..| |..=..=...+|..|.....++=..+... .-+|+.|.-..
T Consensus 15 ~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~KpKKR~~~~~~~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~ 90 (115)
T 4hc9_A 15 STPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYY 90 (115)
T ss_dssp CCSSCEECTTSCEECHHHHHHHHHHSSCCCCSSCCCCCCCCCCTTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHH
T ss_pred cCCcceECCCCCCcCcchhhhhhhcccccccccccccccccccccccCCCcCCCCcceeEECCCC-CCcchHHHHHH
Confidence 35778755543 577777643221 011 11000112346666666554332222222 57899997544
No 274
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=24.07 E-value=31 Score=27.28 Aligned_cols=10 Identities=30% Similarity=0.740 Sum_probs=5.0
Q ss_pred cccccCcccc
Q 011140 430 KCTACGTDFS 439 (492)
Q Consensus 430 ~C~~C~~~Fs 439 (492)
.|..|++.|.
T Consensus 44 ~C~~C~~~f~ 53 (107)
T 1wjp_A 44 VCPYCSLRFF 53 (107)
T ss_dssp CCTTTCCCBS
T ss_pred cCCCCCCccC
Confidence 4555555554
No 275
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=23.67 E-value=33 Score=29.56 Aligned_cols=15 Identities=33% Similarity=1.045 Sum_probs=12.2
Q ss_pred CccccccccccCcee
Q 011140 440 AFVRKHHCRNCGDIF 454 (492)
Q Consensus 440 ~~~RRHHCR~CG~Vf 454 (492)
++.-.--|+.||.+|
T Consensus 63 L~v~p~~C~~CG~~F 77 (105)
T 2gmg_A 63 LLIKPAQCRKCGFVF 77 (105)
T ss_dssp EEECCCBBTTTCCBC
T ss_pred EEEECcChhhCcCee
Confidence 455678899999998
No 276
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=23.39 E-value=39 Score=22.94 Aligned_cols=21 Identities=24% Similarity=0.914 Sum_probs=15.3
Q ss_pred cccccCccccCccccccccccCc
Q 011140 430 KCTACGTDFSAFVRKHHCRNCGD 452 (492)
Q Consensus 430 ~C~~C~~~Fs~~~RRHHCR~CG~ 452 (492)
.|..|+. .-|.||..|..||.
T Consensus 8 ~C~~C~~--~Nfa~R~~C~~C~~ 28 (33)
T 2k1p_A 8 QCKTCSN--VNWARRSECNMCNT 28 (33)
T ss_dssp BCSSSCC--BCCTTCSBCSSSCC
T ss_pred ccCCCCC--ccccccccccccCC
Confidence 5777743 55778899998876
No 277
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=22.76 E-value=35 Score=27.16 Aligned_cols=28 Identities=25% Similarity=0.542 Sum_probs=22.0
Q ss_pred cccccCc---cccCccccccccccCceeccC
Q 011140 430 KCTACGT---DFSAFVRKHHCRNCGDIFCDK 457 (492)
Q Consensus 430 ~C~~C~~---~Fs~~~RRHHCR~CG~VfC~k 457 (492)
+|..|.+ -|+.-....-|..||.++|.-
T Consensus 9 KCp~C~niq~VFShA~tvV~C~~Cg~~L~~P 39 (66)
T 1qxf_A 9 KCPDCEHEQVIFDHPSTIVKCIICGRTVAEP 39 (66)
T ss_dssp ECTTTCCEEEEESSCSSCEECSSSCCEEEEC
T ss_pred ECCCCCCceEEEecCceEEEcccCCCEEeec
Confidence 6888864 577667788899999999864
No 278
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=22.47 E-value=32 Score=33.00 Aligned_cols=28 Identities=21% Similarity=0.579 Sum_probs=19.5
Q ss_pred ccccccCccccC-----cc---ccccccccCceecc
Q 011140 429 SKCTACGTDFSA-----FV---RKHHCRNCGDIFCD 456 (492)
Q Consensus 429 ~~C~~C~~~Fs~-----~~---RRHHCR~CG~VfC~ 456 (492)
..|..|...... +. .-..|-+||+|+-.
T Consensus 199 ~~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL~~ 234 (256)
T 3na7_A 199 QACGGCFIRLNDKIYTEVLTSGDMITCPYCGRILYA 234 (256)
T ss_dssp TBCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEEEC
T ss_pred CccCCCCeeeCHHHHHHHHCCCCEEECCCCCeeEEe
Confidence 489999876653 11 23679999999753
No 279
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=22.23 E-value=31 Score=25.60 Aligned_cols=53 Identities=15% Similarity=0.333 Sum_probs=25.3
Q ss_pred CccccccCccccCcc-------ccccccccCceeccCCCCCcEecccCCCCCceecccchHHHH
Q 011140 428 VSKCTACGTDFSAFV-------RKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGV 484 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~-------RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L 484 (492)
...|..|++...... +.-| ..| ..|..|...-... ........-.|..||..+
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~~~~~~H-~~C--F~C~~C~~~L~~~-~~~~~~g~~yC~~~y~~l 70 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNSNGELYH-EQC--FVCAQCFQQFPEG-LFYEFEGRKYCEHDFQML 70 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEETTEEEE-TTT--SSCTTTCCCCGGG-CCEEETTEEECHHHHHHH
T ss_pred CccchhcCccccCCceEEEeCcCeeC-cCC--CcccCCCCCCCCC-CeEeECCeEeCHHHHHHh
Confidence 457888887665221 1112 122 2345554321111 111123456799999765
No 280
>1e7l_A GP49, recombination endonuclease VII; resolvase, holliday junction, DNAse; HET: SO4; 1.32A {Bacteriophage T4} SCOP: a.140.4.1 d.4.1.5 PDB: 2qnc_A* 1en7_A 1e7d_A 2qnf_A*
Probab=22.15 E-value=32 Score=31.62 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=14.5
Q ss_pred CccccccCccccCccc---ccccc
Q 011140 428 VSKCTACGTDFSAFVR---KHHCR 448 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~R---RHHCR 448 (492)
...|.+|++.|.--.+ .-||.
T Consensus 20 ~g~C~IC~~~l~~~~~~~~vDHdH 43 (157)
T 1e7l_A 20 NGKCLICQRELNPDVQANHLDHDH 43 (157)
T ss_dssp TTBCTTTCCBCCSSGGGSEEEECC
T ss_pred CCcCcccCCccccccccccccCCC
Confidence 4589999998864332 35677
No 281
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=21.71 E-value=20 Score=29.89 Aligned_cols=15 Identities=27% Similarity=0.682 Sum_probs=13.1
Q ss_pred CccccccCccccCcc
Q 011140 428 VSKCTACGTDFSAFV 442 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~ 442 (492)
.-.|.+|++.|..+.
T Consensus 21 ~iiClecGK~fK~Lk 35 (87)
T 2jsp_A 21 HIVCLECGGSFKSLK 35 (87)
T ss_dssp CEECTBTCCEESBHH
T ss_pred ceEecccchhhHHHH
Confidence 448999999999887
No 282
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.36 E-value=40 Score=25.75 Aligned_cols=21 Identities=19% Similarity=0.556 Sum_probs=14.0
Q ss_pred CCcccC-cCCccccccCccccC
Q 011140 420 DHWVPD-EAVSKCTACGTDFSA 440 (492)
Q Consensus 420 p~WvpD-~~v~~C~~C~~~Fs~ 440 (492)
-.|... .....|..|++.|..
T Consensus 16 c~~~~~~~~~~~C~~C~k~f~~ 37 (95)
T 2ej4_A 16 CKWIDEAQLSRPKKSCDRTFST 37 (95)
T ss_dssp CCCCCSSCSSSSCCCCCCCCSS
T ss_pred eEeecCCcCCCcccccccccCC
Confidence 356533 224569999999975
No 283
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=21.33 E-value=61 Score=27.11 Aligned_cols=31 Identities=26% Similarity=0.677 Sum_probs=22.2
Q ss_pred cccccCccccCccccccccccCceeccCCCCCc
Q 011140 430 KCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGR 462 (492)
Q Consensus 430 ~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~r 462 (492)
.|..|.. |+ ..-+.-||-||++|=..|....
T Consensus 17 ~C~VC~~-~t-~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 17 MCDVCEV-WT-AESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCTTTCC-CC-SSCCSSCSSSSSCCCHHHHHHH
T ss_pred ccCcccc-cc-ccceeccccccccccHhhcccc
Confidence 7888864 22 3346789999999988887643
No 284
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.03 E-value=32 Score=19.60 Aligned_cols=10 Identities=40% Similarity=1.178 Sum_probs=5.3
Q ss_pred ccccccCcee
Q 011140 445 HHCRNCGDIF 454 (492)
Q Consensus 445 HHCR~CG~Vf 454 (492)
+.|..||+.|
T Consensus 3 ~~C~~C~~~f 12 (29)
T 2m0e_A 3 HKCPHCDKKF 12 (29)
T ss_dssp CCCSSCCCCC
T ss_pred CcCCCCCccc
Confidence 3455555554
No 285
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=20.68 E-value=22 Score=26.88 Aligned_cols=48 Identities=19% Similarity=0.382 Sum_probs=28.7
Q ss_pred CCccccccCccccCccccccccccCce-eccCCCCCcEecccCCCCCceecccchHHHH
Q 011140 427 AVSKCTACGTDFSAFVRKHHCRNCGDI-FCDKCTHGRIALTADANAQPVRVCDRCMVGV 484 (492)
Q Consensus 427 ~v~~C~~C~~~Fs~~~RRHHCR~CG~V-fC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L 484 (492)
+...|.+|...+....-.| ..||++ +|..|...... ..+.|-.|...+
T Consensus 7 ~~~~C~IC~~~~~~~~~~~--~pCgH~~~C~~C~~~~~~--------~~~~CPiCR~~i 55 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVH--GKTGHLMACFTCAKKLKK--------RNKPCPVCRQPI 55 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEE--TTEEEEEECHHHHHHHHH--------TTCCCTTTCCCC
T ss_pred CcCCCCcCCCCCCCEEEEC--CCCCChhhHHHHHHHHHH--------cCCcCCCcCcch
Confidence 3458999987665332111 369999 89999874321 123466665544
No 286
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.66 E-value=42 Score=26.49 Aligned_cols=28 Identities=36% Similarity=0.757 Sum_probs=21.8
Q ss_pred cccccCc---cccCccccccccccCceeccC
Q 011140 430 KCTACGT---DFSAFVRKHHCRNCGDIFCDK 457 (492)
Q Consensus 430 ~C~~C~~---~Fs~~~RRHHCR~CG~VfC~k 457 (492)
+|..|.+ -|+.-....-|..||.++|.-
T Consensus 17 kCp~C~~~q~VFSha~t~V~C~~Cgt~L~~P 47 (63)
T 3j20_W 17 KCIDCGNEQIVFSHPATKVRCLICGATLVEP 47 (63)
T ss_dssp ECSSSCCEEEEESSCSSCEECSSSCCEEEEC
T ss_pred ECCCCCCeeEEEecCCeEEEccCcCCEEecC
Confidence 6888864 577666778899999998854
No 287
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.59 E-value=27 Score=27.83 Aligned_cols=48 Identities=19% Similarity=0.398 Sum_probs=28.2
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEecccCCCCCceecccchHHHH
Q 011140 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMVGV 484 (492)
Q Consensus 428 v~~C~~C~~~Fs~~~RRHHCR~CG~VfC~kCS~~ri~Lp~~~s~kpvRVC~~Cy~~L 484 (492)
+..|.+|...|.. .--|..|+..|=..|....+. ....++|-.|-..+
T Consensus 15 i~~C~IC~~~i~~---g~~C~~C~h~fH~~Ci~kWl~------~~~~~~CP~Cr~~w 62 (74)
T 2ct0_A 15 VKICNICHSLLIQ---GQSCETCGIRMHLPCVAKYFQ------SNAEPRCPHCNDYW 62 (74)
T ss_dssp SCBCSSSCCBCSS---SEECSSSCCEECHHHHHHHST------TCSSCCCTTTCSCC
T ss_pred CCcCcchhhHccc---CCccCCCCchhhHHHHHHHHH------hcCCCCCCCCcCcC
Confidence 5688888887753 335666766665555554321 12236777775443
No 288
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.41 E-value=50 Score=24.73 Aligned_cols=15 Identities=20% Similarity=0.578 Sum_probs=11.0
Q ss_pred ceecccchHHHHHHh
Q 011140 473 PVRVCDRCMVGVIDW 487 (492)
Q Consensus 473 pvRVC~~Cy~~L~~r 487 (492)
-.-+|..||.++..+
T Consensus 53 ~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 53 RRAYCEGCYVATLES 67 (72)
T ss_dssp SCEEEHHHHHHHHHT
T ss_pred CeEECHHHHHHHHcc
Confidence 346799999877554
No 289
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=20.16 E-value=13 Score=41.65 Aligned_cols=25 Identities=28% Similarity=0.586 Sum_probs=17.8
Q ss_pred CccccccCc-cccCcccccc-----ccccCc
Q 011140 428 VSKCTACGT-DFSAFVRKHH-----CRNCGD 452 (492)
Q Consensus 428 v~~C~~C~~-~Fs~~~RRHH-----CR~CG~ 452 (492)
+-.|..|-+ -|+..+||++ |-+||-
T Consensus 111 ~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGP 141 (761)
T 3vth_A 111 MGVCEDCLRELKDPKDRRYRYPFINCTNCGP 141 (761)
T ss_dssp BCCCHHHHHHHTCTTSTTTTCTTCCBTTBBC
T ss_pred ccccHHHHHHhcCCCccccCCCcccCCCCCc
Confidence 457888864 4667778775 778874
Done!