Query 011141
Match_columns 492
No_of_seqs 277 out of 2216
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 08:34:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011141.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011141hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00165 aspartyl protease; Pr 100.0 1.4E-59 3E-64 492.9 36.2 346 29-492 63-425 (482)
2 cd05490 Cathepsin_D2 Cathepsin 100.0 2.6E-56 5.7E-61 451.6 34.6 304 84-492 1-305 (325)
3 cd06098 phytepsin Phytepsin, a 100.0 8.3E-56 1.8E-60 446.2 32.0 297 80-492 1-297 (317)
4 cd05486 Cathespin_E Cathepsin 100.0 2.1E-55 4.5E-60 443.3 31.8 296 90-492 1-296 (316)
5 cd05487 renin_like Renin stimu 100.0 5.8E-55 1.3E-59 441.8 34.5 304 82-492 1-305 (326)
6 cd05485 Cathepsin_D_like Cathe 100.0 1.3E-54 2.9E-59 439.5 34.6 307 80-492 2-309 (329)
7 cd05478 pepsin_A Pepsin A, asp 100.0 3.8E-54 8.3E-59 434.2 32.8 296 81-492 2-297 (317)
8 cd05488 Proteinase_A_fungi Fun 100.0 5.6E-54 1.2E-58 433.5 33.1 300 80-492 1-300 (320)
9 cd05477 gastricsin Gastricsins 100.0 4.9E-53 1.1E-57 426.4 34.0 296 87-492 1-297 (318)
10 PTZ00147 plasmepsin-1; Provisi 100.0 1.4E-52 3E-57 436.9 36.4 301 76-492 126-428 (453)
11 PTZ00013 plasmepsin 4 (PM4); P 100.0 1.6E-51 3.6E-56 428.0 36.1 301 76-492 125-427 (450)
12 PF00026 Asp: Eukaryotic aspar 100.0 1.1E-47 2.4E-52 386.5 25.8 294 89-491 1-295 (317)
13 KOG1339 Aspartyl protease [Pos 100.0 7.8E-46 1.7E-50 384.4 29.0 299 78-492 35-370 (398)
14 cd06097 Aspergillopepsin_like 100.0 4E-44 8.6E-49 354.8 28.1 220 90-317 1-226 (278)
15 cd05473 beta_secretase_like Be 100.0 5.9E-44 1.3E-48 366.7 28.3 223 88-318 2-240 (364)
16 PLN03146 aspartyl protease fam 100.0 3E-43 6.5E-48 367.3 30.3 216 86-317 81-335 (431)
17 cd05474 SAP_like SAPs, pepsin- 100.0 8.1E-42 1.8E-46 340.9 28.8 257 89-492 2-274 (295)
18 cd06096 Plasmepsin_5 Plasmepsi 100.0 3E-42 6.6E-47 348.8 25.9 215 88-313 2-255 (326)
19 cd05472 cnd41_like Chloroplast 100.0 4.5E-41 9.7E-46 336.4 24.9 191 89-318 1-200 (299)
20 cd05471 pepsin_like Pepsin-lik 100.0 3.7E-39 8E-44 318.9 30.9 227 90-318 1-231 (283)
21 cd05475 nucellin_like Nucellin 100.0 1.4E-37 3E-42 307.1 27.5 183 89-306 2-194 (273)
22 cd05476 pepsin_A_like_plant Ch 100.0 1.4E-37 3E-42 305.8 24.1 178 89-306 1-193 (265)
23 cd05489 xylanase_inhibitor_I_l 100.0 2.5E-35 5.4E-40 301.3 25.4 293 96-492 2-340 (362)
24 cd05470 pepsin_retropepsin_lik 99.9 1.9E-22 4.2E-27 171.0 13.0 108 92-200 1-109 (109)
25 PF14543 TAXi_N: Xylanase inhi 99.9 1E-20 2.2E-25 172.3 16.3 136 90-248 1-164 (164)
26 PF14541 TAXi_C: Xylanase inhi 99.1 3.9E-10 8.4E-15 102.4 9.8 51 268-318 1-58 (161)
27 PF05184 SapB_1: Saposin-like 98.5 7E-08 1.5E-12 65.6 2.8 39 385-423 1-39 (39)
28 cd05483 retropepsin_like_bacte 98.0 1.7E-05 3.7E-10 64.7 7.3 92 89-202 2-94 (96)
29 TIGR02281 clan_AA_DTGA clan AA 97.4 0.0012 2.6E-08 56.8 9.2 101 80-202 2-103 (121)
30 PF13650 Asp_protease_2: Aspar 96.6 0.012 2.5E-07 47.1 8.3 88 92-201 1-89 (90)
31 PF11925 DUF3443: Protein of u 95.8 0.11 2.4E-06 52.3 11.8 197 90-306 24-272 (370)
32 PF03489 SapB_2: Saposin-like 95.5 0.0038 8.2E-08 41.1 0.1 34 323-356 2-35 (35)
33 cd05479 RP_DDI RP_DDI; retrope 95.3 0.11 2.3E-06 44.8 8.6 91 87-202 14-107 (124)
34 smart00741 SapB Saposin (B) Do 95.2 0.023 5.1E-07 43.7 3.7 38 387-424 2-39 (76)
35 COG3577 Predicted aspartyl pro 95.1 0.26 5.5E-06 45.7 10.6 91 76-181 92-183 (215)
36 cd05484 retropepsin_like_LTR_2 94.2 0.22 4.9E-06 40.2 7.4 75 90-182 1-78 (91)
37 KOG1340 Prosaposin [Lipid tran 93.6 0.083 1.8E-06 49.8 4.1 88 324-423 78-166 (218)
38 cd06095 RP_RTVL_H_like Retrope 92.4 0.74 1.6E-05 36.7 7.6 81 93-202 2-84 (86)
39 PF07966 A1_Propeptide: A1 Pro 87.7 0.25 5.5E-06 30.9 0.9 25 30-54 1-25 (29)
40 PF13975 gag-asp_proteas: gag- 82.8 2.2 4.8E-05 32.8 4.3 33 87-121 6-38 (72)
41 KOG1340 Prosaposin [Lipid tran 80.4 1.7 3.7E-05 41.1 3.4 42 384-427 35-76 (218)
42 TIGR02281 clan_AA_DTGA clan AA 79.5 3.6 7.8E-05 35.2 4.9 37 265-311 8-44 (121)
43 PF13650 Asp_protease_2: Aspar 78.5 2.3 5E-05 33.5 3.2 29 276-311 3-31 (90)
44 PF00077 RVP: Retroviral aspar 73.8 5 0.00011 32.6 4.1 29 91-121 7-35 (100)
45 PF13975 gag-asp_proteas: gag- 73.5 4.3 9.4E-05 31.1 3.4 29 276-311 13-41 (72)
46 cd05484 retropepsin_like_LTR_2 72.1 4.6 0.0001 32.4 3.4 29 276-311 5-33 (91)
47 cd05483 retropepsin_like_bacte 67.3 6.8 0.00015 31.1 3.5 29 276-311 7-35 (96)
48 smart00741 SapB Saposin (B) Do 65.2 2.8 6E-05 31.8 0.7 37 320-356 40-76 (76)
49 cd06095 RP_RTVL_H_like Retrope 65.0 6.7 0.00015 31.1 3.0 29 276-311 3-31 (86)
50 PF07172 GRP: Glycine rich pro 59.9 6.7 0.00015 32.1 2.1 12 3-14 1-12 (95)
51 PF09668 Asp_protease: Asparty 59.2 23 0.0005 30.5 5.4 79 88-182 23-103 (124)
52 cd05479 RP_DDI RP_DDI; retrope 58.6 10 0.00022 32.5 3.1 29 276-311 21-49 (124)
53 cd05482 HIV_retropepsin_like R 57.4 16 0.00034 29.4 3.8 27 93-121 2-28 (87)
54 PF08284 RVP_2: Retroviral asp 49.9 1E+02 0.0022 26.8 8.1 29 88-118 20-48 (135)
55 PF12384 Peptidase_A2B: Ty3 tr 47.3 25 0.00053 31.7 3.7 29 91-119 34-62 (177)
56 cd05481 retropepsin_like_LTR_1 44.6 21 0.00046 28.9 2.7 23 290-312 11-33 (93)
57 PF00077 RVP: Retroviral aspar 43.9 15 0.00033 29.7 1.8 26 276-308 10-35 (100)
58 TIGR03698 clan_AA_DTGF clan AA 42.2 20 0.00044 29.8 2.3 23 289-311 16-39 (107)
59 PF09668 Asp_protease: Asparty 39.7 29 0.00064 29.8 2.9 29 276-311 29-57 (124)
60 COG3577 Predicted aspartyl pro 37.6 37 0.00081 31.8 3.4 36 266-311 103-138 (215)
61 COG5550 Predicted aspartyl pro 32.2 32 0.00069 29.5 1.9 22 291-312 28-50 (125)
62 TIGR01165 cbiN cobalt transpor 30.8 53 0.0011 26.5 2.8 24 1-24 1-24 (91)
63 TIGR03698 clan_AA_DTGF clan AA 26.8 75 0.0016 26.4 3.3 66 92-173 2-73 (107)
64 cd03033 ArsC_15kD Arsenate Red 24.9 87 0.0019 26.3 3.4 35 384-418 6-49 (113)
65 COG4714 Uncharacterized membra 21.2 90 0.0019 29.7 2.9 27 1-27 1-27 (303)
No 1
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=1.4e-59 Score=492.89 Aligned_cols=346 Identities=36% Similarity=0.643 Sum_probs=285.1
Q ss_pred ceEEEeccccCcchhhhhhhcccccccchhhhhhccccccCCCCCCCCcceEeceecCCceEEEEEEecCCCceEEEEEe
Q 011141 29 GLYRIGLKKRKFDLNNRVAARLDSKEGESFRTSIRKYSLRGNLGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFD 108 (492)
Q Consensus 29 ~~~~ipL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Y~~~i~iGtP~Q~~~v~lD 108 (492)
.++||||+|.++.|+.+.+. ..+....... ..|.+...+. ....+....||.|+.|.+|+++|+||||||+|.|+||
T Consensus 63 ~~~~i~l~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~D 139 (482)
T PTZ00165 63 PAHKVELHRFALLKKKRKKN-SEKGYISRVL-TKHKYLETKD-PNGLQYLQQDLLNFHNSQYFGEIQVGTPPKSFVVVFD 139 (482)
T ss_pred heEEeeeEEcchHHHhhhhH-HHHHhhhhhh-hccccccccc-cccccccceecccccCCeEEEEEEeCCCCceEEEEEe
Confidence 58999999987766544332 0000000000 0111111110 0001346789999999999999999999999999999
Q ss_pred CCCCCeeeeCCCCCCCccccCCCCCCCCCCCceee--CCc---eEEEEecCCeeEeeEEEeEEEECceeecccEEEEEEe
Q 011141 109 TGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKK--NGK---SADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATR 183 (492)
Q Consensus 109 TGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~--~~~---~~~i~Yg~gs~~G~~~~D~v~~g~~~v~~~~fg~~~~ 183 (492)
|||+++||++..|. ...|..|+.||+++|+||+. .+. .+.+.||+|++.|.+++|+|++|+..+++|.||++..
T Consensus 140 TGSS~lWVps~~C~-~~~C~~~~~yd~s~SSTy~~~~~~~~~~~~~i~YGsGs~~G~l~~DtV~ig~l~i~~q~FG~a~~ 218 (482)
T PTZ00165 140 TGSSNLWIPSKECK-SGGCAPHRKFDPKKSSTYTKLKLGDESAETYIQYGTGECVLALGKDTVKIGGLKVKHQSIGLAIE 218 (482)
T ss_pred CCCCCEEEEchhcC-cccccccCCCCccccCCcEecCCCCccceEEEEeCCCcEEEEEEEEEEEECCEEEccEEEEEEEe
Confidence 99999999999996 56899999999999999998 555 6789999999999999999999999999999999998
Q ss_pred cCCccccccccceeecCCcccc---cCCCCCchHHHHHhcCCCCCCeEEEEecCCCCCCCCcEEEeCcccCCCC--cccc
Q 011141 184 EPSLTFLLAKFDGILGLGFQEI---SVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHY--KGEH 258 (492)
Q Consensus 184 ~~~~~~~~~~~dGIlGLg~~~~---s~~~~~~~~~~L~~qg~I~~~~FSl~l~~~~~~~~~G~L~fGgiD~~~~--~g~l 258 (492)
.++..|...++|||||||++.. +.....|++++|++||+|++++||+||.++.+ .+|+|+|||+|++++ .|++
T Consensus 219 ~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~--~~G~l~fGGiD~~~~~~~g~i 296 (482)
T PTZ00165 219 ESLHPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLN--QPGSISFGSADPKYTLEGHKI 296 (482)
T ss_pred ccccccccccccceeecCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccCCC--CCCEEEeCCcCHHHcCCCCce
Confidence 7665677778999999999887 34457899999999999999999999986532 279999999999877 5789
Q ss_pred eEEeccCccceEEEeceEEEcCccccccCCCceEEEcCCCCceeccHHHHHHHHHHhCCccccccccchhhcchhHHHHH
Q 011141 259 TYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQYGEEIIN 338 (492)
Q Consensus 259 ~~~p~~~~~~w~v~l~~i~vg~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l~~~i~~~~~~~~~C~~~~~~y~~~~~~ 338 (492)
.|+|+...+||.|.+++|+||++.+..+..++.|++||||+++++|.+++++|.+++++.
T Consensus 297 ~~~Pv~~~~yW~i~l~~i~vgg~~~~~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~-------------------- 356 (482)
T PTZ00165 297 WWFPVISTDYWEIEVVDILIDGKSLGFCDRKCKAAIDTGSSLITGPSSVINPLLEKIPLE-------------------- 356 (482)
T ss_pred EEEEccccceEEEEeCeEEECCEEeeecCCceEEEEcCCCccEeCCHHHHHHHHHHcCCc--------------------
Confidence 999999999999999999999987766667789999999999999999999999988654
Q ss_pred HhhcccCcccccccccccccCCCCcccccccccccccCCCCCCCCCcccCchhHHHHHHHHHHHhhhchHHHHHHHHHhh
Q 011141 339 MLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNEL 418 (492)
Q Consensus 339 ~~~~~~~~~~~c~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (492)
T Consensus 357 -------------------------------------------------------------------------------- 356 (482)
T PTZ00165 357 -------------------------------------------------------------------------------- 356 (482)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCceeeeCccCCCCCcEEEEECCE-----EEeeCcCcceEEeC--cCCcceeeeceeecccCCCCCCeEEEcC
Q 011141 419 CDRLPSPMGESAVDCSRLSSLPIVSFTIGGK-----IFDLTPDQYILKVG--EGDAAQCISGFSALDVAPPRGPLWYVYS 491 (492)
Q Consensus 419 c~~~~~~~~~~~~~c~~~~~~p~~~f~~~~~-----~~~l~~~~y~~~~~--~~~~~~C~~~~~~~~~~~~~~~~~ilg~ 491 (492)
.+|+..+.+|+|+|+|+|. .|+|+|++|+++.. ..+...|+++|++.|.+.+.++.|||||
T Consensus 357 ------------~~C~~~~~lP~itf~f~g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd 424 (482)
T PTZ00165 357 ------------EDCSNKDSLPRISFVLEDVNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGN 424 (482)
T ss_pred ------------ccccccccCCceEEEECCCCCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEch
Confidence 1788888999999999864 89999999999852 3344689999999998777789999998
Q ss_pred C
Q 011141 492 C 492 (492)
Q Consensus 492 ~ 492 (492)
+
T Consensus 425 ~ 425 (482)
T PTZ00165 425 N 425 (482)
T ss_pred h
Confidence 5
No 2
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=2.6e-56 Score=451.57 Aligned_cols=304 Identities=52% Similarity=1.007 Sum_probs=268.0
Q ss_pred ecCCceEEEEEEecCCCceEEEEEeCCCCCeeeeCCCCCC-CccccCCCCCCCCCCCceeeCCceEEEEecCCeeEeeEE
Q 011141 84 NYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYF-SIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFS 162 (492)
Q Consensus 84 ~~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~~G~~~ 162 (492)
|+.|.+|+++|.||||||+|.|+|||||+++||++..|.. ...|..++.|+|++|+||+..++.|.+.|++|++.|.++
T Consensus 1 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G~~~ 80 (325)
T cd05490 1 NYMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKNGTEFAIQYGSGSLSGYLS 80 (325)
T ss_pred CCcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeCCcEEEEEECCcEEEEEEe
Confidence 4678999999999999999999999999999999999963 247888999999999999999999999999999999999
Q ss_pred EeEEEECceeecccEEEEEEecCCccccccccceeecCCcccccCCCCCchHHHHHhcCCCCCCeEEEEecCCCCCCCCc
Q 011141 163 EDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGG 242 (492)
Q Consensus 163 ~D~v~~g~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~l~~~~~~~~~G 242 (492)
+|+|+||+..++++.||++....+..|....++||||||++..+.....|++++|++||.|++++||+||.++.+...+|
T Consensus 81 ~D~v~~g~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G 160 (325)
T cd05490 81 QDTVSIGGLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGG 160 (325)
T ss_pred eeEEEECCEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCC
Confidence 99999999999999999998776544555678999999999888777889999999999999999999998754333479
Q ss_pred EEEeCcccCCCCcccceEEeccCccceEEEeceEEEcCccccccCCCceEEEcCCCCceeccHHHHHHHHHHhCCccccc
Q 011141 243 EIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVS 322 (492)
Q Consensus 243 ~L~fGgiD~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l~~~i~~~~~~~ 322 (492)
+|+|||+|+++|.|++.|+|+....+|.|.+++|+||+... .+.....++|||||+++++|.+++++|.+++++.
T Consensus 161 ~l~~Gg~d~~~~~g~l~~~~~~~~~~w~v~l~~i~vg~~~~-~~~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~---- 235 (325)
T cd05490 161 ELMLGGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLT-LCKGGCEAIVDTGTSLITGPVEEVRALQKAIGAV---- 235 (325)
T ss_pred EEEECccCHHHcCCceEEEEcCcceEEEEEeeEEEECCeee-ecCCCCEEEECCCCccccCCHHHHHHHHHHhCCc----
Confidence 99999999999999999999998899999999999988643 2345678999999999999999999999988654
Q ss_pred cccchhhcchhHHHHHHhhcccCcccccccccccccCCCCcccccccccccccCCCCCCCCCcccCchhHHHHHHHHHHH
Q 011141 323 QECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQL 402 (492)
Q Consensus 323 ~~C~~~~~~y~~~~~~~~~~~~~~~~~c~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 402 (492)
T Consensus 236 -------------------------------------------------------------------------------- 235 (325)
T cd05490 236 -------------------------------------------------------------------------------- 235 (325)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhchHHHHHHHHHhhcccCCCCCCceeeeCccCCCCCcEEEEECCEEEeeCcCcceEEeCcCCcceeeeceeecccCCC
Q 011141 403 KQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPP 482 (492)
Q Consensus 403 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~p~~~f~~~~~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~ 482 (492)
+...+.|.++|+....+|+|+|+|+|+.|.|+|++|+++....+...|+++|++.+.+++
T Consensus 236 --------------------~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~ 295 (325)
T cd05490 236 --------------------PLIQGEYMIDCEKIPTLPVISFSLGGKVYPLTGEDYILKVSQRGTTICLSGFMGLDIPPP 295 (325)
T ss_pred --------------------cccCCCEEecccccccCCCEEEEECCEEEEEChHHeEEeccCCCCCEEeeEEEECCCCCC
Confidence 112456899999988999999999999999999999998655444579999999887666
Q ss_pred CCCeEEEcCC
Q 011141 483 RGPLWYVYSC 492 (492)
Q Consensus 483 ~~~~~ilg~~ 492 (492)
.++.|||||+
T Consensus 296 ~~~~~ilGd~ 305 (325)
T cd05490 296 AGPLWILGDV 305 (325)
T ss_pred CCceEEEChH
Confidence 6679999984
No 3
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=8.3e-56 Score=446.21 Aligned_cols=297 Identities=84% Similarity=1.425 Sum_probs=265.1
Q ss_pred EeceecCCceEEEEEEecCCCceEEEEEeCCCCCeeeeCCCCCCCccccCCCCCCCCCCCceeeCCceEEEEecCCeeEe
Q 011141 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISG 159 (492)
Q Consensus 80 ~~l~~~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~~G 159 (492)
+||.|+.|.+|+++|.||||||++.|+|||||+++||++..|.....|..++.|+|++|+||+..+..+.+.|++|++.|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G 80 (317)
T cd06098 1 VALKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYKSSKSSTYKKNGTSASIQYGTGSISG 80 (317)
T ss_pred CcccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccccCcCCcccCCCcccCCCEEEEEcCCceEEE
Confidence 57899999999999999999999999999999999999999964458999999999999999999999999999999999
Q ss_pred eEEEeEEEECceeecccEEEEEEecCCccccccccceeecCCcccccCCCCCchHHHHHhcCCCCCCeEEEEecCCCCCC
Q 011141 160 FFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEE 239 (492)
Q Consensus 160 ~~~~D~v~~g~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~l~~~~~~~ 239 (492)
.+++|+|++|+..++++.||++....+..|....++||||||++..+.....|++++|++||+|++++||+||.+..+..
T Consensus 81 ~~~~D~v~ig~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~ 160 (317)
T cd06098 81 FFSQDSVTVGDLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEE 160 (317)
T ss_pred EEEeeEEEECCEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCC
Confidence 99999999999999999999998776555666678999999999888777888999999999999999999998754333
Q ss_pred CCcEEEeCcccCCCCcccceEEeccCccceEEEeceEEEcCccccccCCCceEEEcCCCCceeccHHHHHHHHHHhCCcc
Q 011141 240 EGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATG 319 (492)
Q Consensus 240 ~~G~L~fGgiD~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l~~~i~~~~ 319 (492)
..|+|+|||+|+++|.|++.|+|+...++|.|.+++|+||++.+..+.....++|||||+++++|.+++++|.
T Consensus 161 ~~G~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~~~~~i~------- 233 (317)
T cd06098 161 EGGELVFGGVDPKHFKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTTIVTQIN------- 233 (317)
T ss_pred CCcEEEECccChhhcccceEEEecCcCcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHHHHHhhh-------
Confidence 4799999999999999999999999889999999999999988766666788999999999999998765542
Q ss_pred ccccccchhhcchhHHHHHHhhcccCcccccccccccccCCCCcccccccccccccCCCCCCCCCcccCchhHHHHHHHH
Q 011141 320 IVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQ 399 (492)
Q Consensus 320 ~~~~~C~~~~~~y~~~~~~~~~~~~~~~~~c~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ 399 (492)
T Consensus 234 -------------------------------------------------------------------------------- 233 (317)
T cd06098 234 -------------------------------------------------------------------------------- 233 (317)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhchHHHHHHHHHhhcccCCCCCCceeeeCccCCCCCcEEEEECCEEEeeCcCcceEEeCcCCcceeeeceeeccc
Q 011141 400 NQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDV 479 (492)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~p~~~f~~~~~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~ 479 (492)
|.++|+....+|+|+|+|+|+.|+|+|++|+++..+.....|+++|++.+.
T Consensus 234 -----------------------------~~~~C~~~~~~P~i~f~f~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~ 284 (317)
T cd06098 234 -----------------------------SAVDCNSLSSMPNVSFTIGGKTFELTPEQYILKVGEGAAAQCISGFTALDV 284 (317)
T ss_pred -----------------------------ccCCccccccCCcEEEEECCEEEEEChHHeEEeecCCCCCEEeceEEECCC
Confidence 245898888899999999999999999999998765555689999998886
Q ss_pred CCCCCCeEEEcCC
Q 011141 480 APPRGPLWYVYSC 492 (492)
Q Consensus 480 ~~~~~~~~ilg~~ 492 (492)
..+.++.|||||+
T Consensus 285 ~~~~~~~~IlGd~ 297 (317)
T cd06098 285 PPPRGPLWILGDV 297 (317)
T ss_pred CCCCCCeEEechH
Confidence 6556778999984
No 4
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=2.1e-55 Score=443.29 Aligned_cols=296 Identities=47% Similarity=0.904 Sum_probs=263.2
Q ss_pred EEEEEEecCCCceEEEEEeCCCCCeeeeCCCCCCCccccCCCCCCCCCCCceeeCCceEEEEecCCeeEeeEEEeEEEEC
Q 011141 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIG 169 (492)
Q Consensus 90 Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~~G~~~~D~v~~g 169 (492)
|+++|+||||||+++|+|||||+++||++..|. ...|..++.|+|++|+||+..++.+.+.|++|++.|.+++|+|++|
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~~G~~~~D~v~ig 79 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCT-SQACTKHNRFQPSESSTYVSNGEAFSIQYGTGSLTGIIGIDQVTVE 79 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCC-CcccCccceECCCCCcccccCCcEEEEEeCCcEEEEEeeecEEEEC
Confidence 899999999999999999999999999999996 4579989999999999999999999999999999999999999999
Q ss_pred ceeecccEEEEEEecCCccccccccceeecCCcccccCCCCCchHHHHHhcCCCCCCeEEEEecCCCCCCCCcEEEeCcc
Q 011141 170 DLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGM 249 (492)
Q Consensus 170 ~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~l~~~~~~~~~G~L~fGgi 249 (492)
+..++++.||++....+..|....++||||||++..+.....|++++|++||+|+.++||+||.++++....|+|+|||+
T Consensus 80 ~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~ 159 (316)
T cd05486 80 GITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGF 159 (316)
T ss_pred CEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEccc
Confidence 99999999999877665445556789999999998887778889999999999999999999987643344799999999
Q ss_pred cCCCCcccceEEeccCccceEEEeceEEEcCccccccCCCceEEEcCCCCceeccHHHHHHHHHHhCCccccccccchhh
Q 011141 250 DPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVV 329 (492)
Q Consensus 250 D~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l~~~i~~~~~~~~~C~~~~ 329 (492)
|+++|.|++.|+|+...++|.|.+++|+|+++.+. ...+..++|||||+++++|++++++|.+.+++..
T Consensus 160 d~~~~~g~l~~~pi~~~~~w~v~l~~i~v~g~~~~-~~~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~~---------- 228 (316)
T cd05486 160 DTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGTVIF-CSDGCQAIVDTGTSLITGPSGDIKQLQNYIGATA---------- 228 (316)
T ss_pred CHHHcccceEEEECCCceEEEEEeeEEEEecceEe-cCCCCEEEECCCcchhhcCHHHHHHHHHHhCCcc----------
Confidence 99999999999999999999999999999998763 3456789999999999999999999998886541
Q ss_pred cchhHHHHHHhhcccCcccccccccccccCCCCcccccccccccccCCCCCCCCCcccCchhHHHHHHHHHHHhhhchHH
Q 011141 330 SQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQE 409 (492)
Q Consensus 330 ~~y~~~~~~~~~~~~~~~~~c~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ 409 (492)
T Consensus 229 -------------------------------------------------------------------------------- 228 (316)
T cd05486 229 -------------------------------------------------------------------------------- 228 (316)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhcccCCCCCCceeeeCccCCCCCcEEEEECCEEEeeCcCcceEEeCcCCcceeeeceeecccCCCCCCeEEE
Q 011141 410 RILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWYV 489 (492)
Q Consensus 410 ~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~p~~~f~~~~~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~il 489 (492)
..+.|.++|+....+|+|+|+|+|+.|+|+|++|++.....+...|+++|++.+..+..++.|||
T Consensus 229 ---------------~~~~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~IL 293 (316)
T cd05486 229 ---------------TDGEYGVDCSTLSLMPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCSSGFQGLDIPPPAGPLWIL 293 (316)
T ss_pred ---------------cCCcEEEeccccccCCCEEEEECCEEEEeCHHHeEEecccCCCCEEeeEEEECCCCCCCCCeEEE
Confidence 14568899998889999999999999999999999976433446899999998876656778999
Q ss_pred cCC
Q 011141 490 YSC 492 (492)
Q Consensus 490 g~~ 492 (492)
||.
T Consensus 294 Gd~ 296 (316)
T cd05486 294 GDV 296 (316)
T ss_pred chH
Confidence 984
No 5
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=5.8e-55 Score=441.84 Aligned_cols=304 Identities=45% Similarity=0.917 Sum_probs=269.1
Q ss_pred ceecCCceEEEEEEecCCCceEEEEEeCCCCCeeeeCCCCCC-CccccCCCCCCCCCCCceeeCCceEEEEecCCeeEee
Q 011141 82 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYF-SIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGF 160 (492)
Q Consensus 82 l~~~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~~G~ 160 (492)
|.|+.|.+|+++|+||||+|+++|++||||+++||++..|.. ...|..++.|+|++|+||+..++.|.+.|++|+++|.
T Consensus 1 ~~~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~~~~~~~Yg~g~~~G~ 80 (326)
T cd05487 1 LTNYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENGTEFTIHYASGTVKGF 80 (326)
T ss_pred CcccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECCEEEEEEeCCceEEEE
Confidence 567889999999999999999999999999999999999963 2478889999999999999999999999999999999
Q ss_pred EEEeEEEECceeecccEEEEEEecCCccccccccceeecCCcccccCCCCCchHHHHHhcCCCCCCeEEEEecCCCCCCC
Q 011141 161 FSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEE 240 (492)
Q Consensus 161 ~~~D~v~~g~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~l~~~~~~~~ 240 (492)
+++|+|++|+..+. +.||++.......|....++||||||++..+..+..|++++|++||.|++++||+||.+.++...
T Consensus 81 ~~~D~v~~g~~~~~-~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~ 159 (326)
T cd05487 81 LSQDIVTVGGIPVT-QMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSL 159 (326)
T ss_pred EeeeEEEECCEEee-EEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCC
Confidence 99999999998885 88999987654445556789999999988777778899999999999999999999987643345
Q ss_pred CcEEEeCcccCCCCcccceEEeccCccceEEEeceEEEcCccccccCCCceEEEcCCCCceeccHHHHHHHHHHhCCccc
Q 011141 241 GGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGI 320 (492)
Q Consensus 241 ~G~L~fGgiD~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l~~~i~~~~~ 320 (492)
.|+|+|||+|+++|.|+++|+|+...++|.|.+++++|+++.+. +..+..++|||||+++++|.+++++|++++++..
T Consensus 160 ~G~l~fGg~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~-~~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~- 237 (326)
T cd05487 160 GGEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLL-CEDGCTAVVDTGASFISGPTSSISKLMEALGAKE- 237 (326)
T ss_pred CcEEEECCcChhhccCceEEEECCcCceEEEEecEEEECCEEEe-cCCCCEEEECCCccchhCcHHHHHHHHHHhCCcc-
Confidence 79999999999999999999999999999999999999998764 3456789999999999999999999999997651
Q ss_pred cccccchhhcchhHHHHHHhhcccCcccccccccccccCCCCcccccccccccccCCCCCCCCCcccCchhHHHHHHHHH
Q 011141 321 VSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQN 400 (492)
Q Consensus 321 ~~~~C~~~~~~y~~~~~~~~~~~~~~~~~c~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 400 (492)
T Consensus 238 -------------------------------------------------------------------------------- 237 (326)
T cd05487 238 -------------------------------------------------------------------------------- 237 (326)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhchHHHHHHHHHhhcccCCCCCCceeeeCccCCCCCcEEEEECCEEEeeCcCcceEEeCcCCcceeeeceeecccC
Q 011141 401 QLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVA 480 (492)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~p~~~f~~~~~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~ 480 (492)
..+.|.++|+....+|+|+|+|+|+.|+|++++|+++..+.+...|+++|++.+..
T Consensus 238 ------------------------~~~~y~~~C~~~~~~P~i~f~fgg~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~~ 293 (326)
T cd05487 238 ------------------------RLGDYVVKCNEVPTLPDISFHLGGKEYTLSSSDYVLQDSDFSDKLCTVAFHAMDIP 293 (326)
T ss_pred ------------------------cCCCEEEeccccCCCCCEEEEECCEEEEeCHHHhEEeccCCCCCEEEEEEEeCCCC
Confidence 13568999999889999999999999999999999987665557899999998876
Q ss_pred CCCCCeEEEcCC
Q 011141 481 PPRGPLWYVYSC 492 (492)
Q Consensus 481 ~~~~~~~ilg~~ 492 (492)
++.++.||||++
T Consensus 294 ~~~~~~~ilG~~ 305 (326)
T cd05487 294 PPTGPLWVLGAT 305 (326)
T ss_pred CCCCCeEEEehH
Confidence 566779999984
No 6
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=1.3e-54 Score=439.53 Aligned_cols=307 Identities=57% Similarity=1.037 Sum_probs=271.8
Q ss_pred EeceecCCceEEEEEEecCCCceEEEEEeCCCCCeeeeCCCCCC-CccccCCCCCCCCCCCceeeCCceEEEEecCCeeE
Q 011141 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYF-SIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAIS 158 (492)
Q Consensus 80 ~~l~~~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~~ 158 (492)
.+|.|+.|.+|+++|+||||+|++.|++||||+++||++..|.. ...|..++.|+|++|+|++..++.|.+.|++|++.
T Consensus 2 ~~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~~~~~i~Y~~g~~~ 81 (329)
T cd05485 2 EPLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKNGTEFAIQYGSGSLS 81 (329)
T ss_pred ccceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEECCeEEEEEECCceEE
Confidence 47899999999999999999999999999999999999999953 23688888999999999999999999999999999
Q ss_pred eeEEEeEEEECceeecccEEEEEEecCCccccccccceeecCCcccccCCCCCchHHHHHhcCCCCCCeEEEEecCCCCC
Q 011141 159 GFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADE 238 (492)
Q Consensus 159 G~~~~D~v~~g~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~l~~~~~~ 238 (492)
|.+++|+|++|+..++++.||++....+..|.....+||||||++..+.....|++.+|++||+|++++||+||.+..+.
T Consensus 82 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~ 161 (329)
T cd05485 82 GFLSTDTVSVGGVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSA 161 (329)
T ss_pred EEEecCcEEECCEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCC
Confidence 99999999999999999999999876654455567899999999988777778899999999999999999999876543
Q ss_pred CCCcEEEeCcccCCCCcccceEEeccCccceEEEeceEEEcCccccccCCCceEEEcCCCCceeccHHHHHHHHHHhCCc
Q 011141 239 EEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 318 (492)
Q Consensus 239 ~~~G~L~fGgiD~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l~~~i~~~ 318 (492)
...|+|+|||+|+++|.|++.|+|+...++|.|.++++.++++.. +..+..++|||||+++++|.+++++|.+++++.
T Consensus 162 ~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~~~~i~v~~~~~--~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~ 239 (329)
T cd05485 162 KEGGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEF--CSGGCQAIADTGTSLIAGPVDEIEKLNNAIGAK 239 (329)
T ss_pred CCCcEEEEcccCHHHcccceEEEEcCCceEEEEEeeEEEECCeee--cCCCcEEEEccCCcceeCCHHHHHHHHHHhCCc
Confidence 457999999999999999999999999999999999999999865 345678999999999999999999999998765
Q ss_pred cccccccchhhcchhHHHHHHhhcccCcccccccccccccCCCCcccccccccccccCCCCCCCCCcccCchhHHHHHHH
Q 011141 319 GIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWM 398 (492)
Q Consensus 319 ~~~~~~C~~~~~~y~~~~~~~~~~~~~~~~~c~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 398 (492)
.
T Consensus 240 ~------------------------------------------------------------------------------- 240 (329)
T cd05485 240 P------------------------------------------------------------------------------- 240 (329)
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred HHHHhhhchHHHHHHHHHhhcccCCCCCCceeeeCccCCCCCcEEEEECCEEEeeCcCcceEEeCcCCcceeeeceeecc
Q 011141 399 QNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALD 478 (492)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~p~~~f~~~~~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~ 478 (492)
-..+.|.++|+..+.+|+|+|+|||+.|.|+|++|+++....+...|+++|+..+
T Consensus 241 -------------------------~~~~~~~~~C~~~~~~p~i~f~fgg~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~ 295 (329)
T cd05485 241 -------------------------IIGGEYMVNCSAIPSLPDITFVLGGKSFSLTGKDYVLKVTQMGQTICLSGFMGID 295 (329)
T ss_pred -------------------------ccCCcEEEeccccccCCcEEEEECCEEeEEChHHeEEEecCCCCCEEeeeEEECc
Confidence 0135688999988889999999999999999999999876555568999999887
Q ss_pred cCCCCCCeEEEcCC
Q 011141 479 VAPPRGPLWYVYSC 492 (492)
Q Consensus 479 ~~~~~~~~~ilg~~ 492 (492)
.++..++.||||+.
T Consensus 296 ~~~~~~~~~IlG~~ 309 (329)
T cd05485 296 IPPPAGPLWILGDV 309 (329)
T ss_pred CCCCCCCeEEEchH
Confidence 66656678999984
No 7
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=3.8e-54 Score=434.24 Aligned_cols=296 Identities=46% Similarity=0.873 Sum_probs=263.1
Q ss_pred eceecCCceEEEEEEecCCCceEEEEEeCCCCCeeeeCCCCCCCccccCCCCCCCCCCCceeeCCceEEEEecCCeeEee
Q 011141 81 ALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGF 160 (492)
Q Consensus 81 ~l~~~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~~G~ 160 (492)
||.|+.+.+|+++|.||||||++.|+|||||+++||++..|. ...|..++.|+|++|+|++..++.+.+.|++|++.|.
T Consensus 2 ~l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~-~~~c~~~~~f~~~~Sst~~~~~~~~~~~yg~gs~~G~ 80 (317)
T cd05478 2 PLTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCS-SQACSNHNRFNPRQSSTYQSTGQPLSIQYGTGSMTGI 80 (317)
T ss_pred ccccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCC-cccccccCcCCCCCCcceeeCCcEEEEEECCceEEEE
Confidence 789999999999999999999999999999999999999996 4579889999999999999999999999999999999
Q ss_pred EEEeEEEECceeecccEEEEEEecCCccccccccceeecCCcccccCCCCCchHHHHHhcCCCCCCeEEEEecCCCCCCC
Q 011141 161 FSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEE 240 (492)
Q Consensus 161 ~~~D~v~~g~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~l~~~~~~~~ 240 (492)
+++|+|++|+..++++.||++....+..+.....+||||||++..+..+..|++++|++||+|++++||+||.+..+ .
T Consensus 81 ~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~--~ 158 (317)
T cd05478 81 LGYDTVQVGGISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQDLFSVYLSSNGQ--Q 158 (317)
T ss_pred EeeeEEEECCEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCCCCCEEEEEeCCCCC--C
Confidence 99999999999999999999987654333334579999999998877778889999999999999999999987632 3
Q ss_pred CcEEEeCcccCCCCcccceEEeccCccceEEEeceEEEcCccccccCCCceEEEcCCCCceeccHHHHHHHHHHhCCccc
Q 011141 241 GGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGI 320 (492)
Q Consensus 241 ~G~L~fGgiD~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l~~~i~~~~~ 320 (492)
+|+|+|||+|+++|.|++.|+|+....+|.|.++++.||++.+. ...+..++|||||+++++|++.+++|.+++++..
T Consensus 159 ~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~v~v~g~~~~-~~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~- 236 (317)
T cd05478 159 GSVVTFGGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQVVA-CSGGCQAIVDTGTSLLVGPSSDIANIQSDIGASQ- 236 (317)
T ss_pred CeEEEEcccCHHHccCceEEEECCCCcEEEEEeeEEEECCEEEc-cCCCCEEEECCCchhhhCCHHHHHHHHHHhCCcc-
Confidence 79999999999999999999999999999999999999998874 3346789999999999999999999999987651
Q ss_pred cccccchhhcchhHHHHHHhhcccCcccccccccccccCCCCcccccccccccccCCCCCCCCCcccCchhHHHHHHHHH
Q 011141 321 VSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQN 400 (492)
Q Consensus 321 ~~~~C~~~~~~y~~~~~~~~~~~~~~~~~c~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 400 (492)
T Consensus 237 -------------------------------------------------------------------------------- 236 (317)
T cd05478 237 -------------------------------------------------------------------------------- 236 (317)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhchHHHHHHHHHhhcccCCCCCCceeeeCccCCCCCcEEEEECCEEEeeCcCcceEEeCcCCcceeeeceeecccC
Q 011141 401 QLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVA 480 (492)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~p~~~f~~~~~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~ 480 (492)
...+.|.++|+....+|.|+|+|+|+.|.|+|++|+++. ...|+++|+..+
T Consensus 237 -----------------------~~~~~~~~~C~~~~~~P~~~f~f~g~~~~i~~~~y~~~~----~~~C~~~~~~~~-- 287 (317)
T cd05478 237 -----------------------NQNGEMVVNCSSISSMPDVVFTINGVQYPLPPSAYILQD----QGSCTSGFQSMG-- 287 (317)
T ss_pred -----------------------ccCCcEEeCCcCcccCCcEEEEECCEEEEECHHHheecC----CCEEeEEEEeCC--
Confidence 124568899999889999999999999999999999874 257999998764
Q ss_pred CCCCCeEEEcCC
Q 011141 481 PPRGPLWYVYSC 492 (492)
Q Consensus 481 ~~~~~~~ilg~~ 492 (492)
.++.||||+.
T Consensus 288 --~~~~~IlG~~ 297 (317)
T cd05478 288 --LGELWILGDV 297 (317)
T ss_pred --CCCeEEechH
Confidence 2467999973
No 8
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=5.6e-54 Score=433.53 Aligned_cols=300 Identities=50% Similarity=0.905 Sum_probs=266.7
Q ss_pred EeceecCCceEEEEEEecCCCceEEEEEeCCCCCeeeeCCCCCCCccccCCCCCCCCCCCceeeCCceEEEEecCCeeEe
Q 011141 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISG 159 (492)
Q Consensus 80 ~~l~~~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~~G 159 (492)
+||.|+.|.+|+++|+||||+|++.|+|||||+++||++..|. ...|..++.|++++|+|++..++.+.+.|++|+++|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~-~~~C~~~~~y~~~~Sst~~~~~~~~~~~y~~g~~~G 79 (320)
T cd05488 1 VPLTNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCG-SIACFLHSKYDSSASSTYKANGTEFKIQYGSGSLEG 79 (320)
T ss_pred CcccccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCC-CcccCCcceECCCCCcceeeCCCEEEEEECCceEEE
Confidence 5889999999999999999999999999999999999999996 457988899999999999999999999999999999
Q ss_pred eEEEeEEEECceeecccEEEEEEecCCccccccccceeecCCcccccCCCCCchHHHHHhcCCCCCCeEEEEecCCCCCC
Q 011141 160 FFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEE 239 (492)
Q Consensus 160 ~~~~D~v~~g~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~l~~~~~~~ 239 (492)
.+++|++++++..++++.|+++....+..+....++||||||++..+.....|.+.+|++||+|++++||+||.+.. .
T Consensus 80 ~~~~D~v~ig~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~--~ 157 (320)
T cd05488 80 FVSQDTLSIGDLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPVFSFYLGSSE--E 157 (320)
T ss_pred EEEEeEEEECCEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEecCCC--C
Confidence 99999999999999999999998766554555678999999999887777778889999999999999999999753 2
Q ss_pred CCcEEEeCcccCCCCcccceEEeccCccceEEEeceEEEcCccccccCCCceEEEcCCCCceeccHHHHHHHHHHhCCcc
Q 011141 240 EGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATG 319 (492)
Q Consensus 240 ~~G~L~fGgiD~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l~~~i~~~~ 319 (492)
..|+|+|||+|++++.|++.|+|+...++|.|.+++|+||++.+.. .+..++|||||+++++|++++++|.+++++..
T Consensus 158 ~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~--~~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~ 235 (320)
T cd05488 158 DGGEATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDEELEL--ENTGAAIDTGTSLIALPSDLAEMLNAEIGAKK 235 (320)
T ss_pred CCcEEEECCcCHHHcCCceEEEeCCcCcEEEEEeCeEEECCEEecc--CCCeEEEcCCcccccCCHHHHHHHHHHhCCcc
Confidence 3799999999999999999999999889999999999999987643 35679999999999999999999999987551
Q ss_pred ccccccchhhcchhHHHHHHhhcccCcccccccccccccCCCCcccccccccccccCCCCCCCCCcccCchhHHHHHHHH
Q 011141 320 IVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQ 399 (492)
Q Consensus 320 ~~~~~C~~~~~~y~~~~~~~~~~~~~~~~~c~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ 399 (492)
T Consensus 236 -------------------------------------------------------------------------------- 235 (320)
T cd05488 236 -------------------------------------------------------------------------------- 235 (320)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhchHHHHHHHHHhhcccCCCCCCceeeeCccCCCCCcEEEEECCEEEeeCcCcceEEeCcCCcceeeeceeeccc
Q 011141 400 NQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDV 479 (492)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~p~~~f~~~~~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~ 479 (492)
...+.|.++|+....+|.|+|+|+|+.|.|+|++|+++.. +.|++.|.+.+.
T Consensus 236 ------------------------~~~~~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~~----g~C~~~~~~~~~ 287 (320)
T cd05488 236 ------------------------SWNGQYTVDCSKVDSLPDLTFNFDGYNFTLGPFDYTLEVS----GSCISAFTGMDF 287 (320)
T ss_pred ------------------------ccCCcEEeeccccccCCCEEEEECCEEEEECHHHheecCC----CeEEEEEEECcC
Confidence 1255688999998889999999999999999999998532 369999998876
Q ss_pred CCCCCCeEEEcCC
Q 011141 480 APPRGPLWYVYSC 492 (492)
Q Consensus 480 ~~~~~~~~ilg~~ 492 (492)
+...++.||||+.
T Consensus 288 ~~~~~~~~ilG~~ 300 (320)
T cd05488 288 PEPVGPLAIVGDA 300 (320)
T ss_pred CCCCCCeEEEchH
Confidence 5445678999984
No 9
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=4.9e-53 Score=426.42 Aligned_cols=296 Identities=43% Similarity=0.867 Sum_probs=261.4
Q ss_pred CceEEEEEEecCCCceEEEEEeCCCCCeeeeCCCCCCCccccCCCCCCCCCCCceeeCCceEEEEecCCeeEeeEEEeEE
Q 011141 87 DAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHV 166 (492)
Q Consensus 87 ~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~~G~~~~D~v 166 (492)
|.+|+++|+||||||++.|++||||+++||++..|. ...|..++.|||++|+||+..++.|.+.|++|++.|.++.|+|
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~G~~~~D~i 79 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQ-SQACTNHTKFNPSQSSTYSTNGETFSLQYGSGSLTGIFGYDTV 79 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCC-CccccccCCCCcccCCCceECCcEEEEEECCcEEEEEEEeeEE
Confidence 468999999999999999999999999999999996 4579989999999999999999999999999999999999999
Q ss_pred EECceeecccEEEEEEecCCccccccccceeecCCcccccCCCCCchHHHHHhcCCCCCCeEEEEecCCCCCCCCcEEEe
Q 011141 167 KIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVF 246 (492)
Q Consensus 167 ~~g~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~l~~~~~~~~~G~L~f 246 (492)
++|+..++++.||++....+..+.....+||||||++..+.....+++++|+++|.|++++||+||.+.. ....|+|+|
T Consensus 80 ~~g~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~-~~~~g~l~f 158 (318)
T cd05477 80 TVQGIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIFSFYLSGQQ-GQQGGELVF 158 (318)
T ss_pred EECCEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCEEEEEEcCCC-CCCCCEEEE
Confidence 9999999999999999765544445567999999999888777889999999999999999999998753 223799999
Q ss_pred CcccCCCCcccceEEeccCccceEEEeceEEEcCccccccCCCceEEEcCCCCceeccHHHHHHHHHHhCCccccccccc
Q 011141 247 GGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECK 326 (492)
Q Consensus 247 GgiD~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l~~~i~~~~~~~~~C~ 326 (492)
||+|++++.|++.|+|+...++|.|.+++++|+++....+..+..++|||||+++++|++++++|++.+++.
T Consensus 159 Gg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~-------- 230 (318)
T cd05477 159 GGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQ-------- 230 (318)
T ss_pred cccCHHHcCCceEEEecCCceEEEEEeeEEEECCEEecccCCCceeeECCCCccEECCHHHHHHHHHHhCCc--------
Confidence 999999999999999999999999999999999987765556678999999999999999999999998765
Q ss_pred hhhcchhHHHHHHhhcccCcccccccccccccCCCCcccccccccccccCCCCCCCCCcccCchhHHHHHHHHHHHhhhc
Q 011141 327 AVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQ 406 (492)
Q Consensus 327 ~~~~~y~~~~~~~~~~~~~~~~~c~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~ 406 (492)
T Consensus 231 -------------------------------------------------------------------------------- 230 (318)
T cd05477 231 -------------------------------------------------------------------------------- 230 (318)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHhhcccCCCCCCceeeeCccCCCCCcEEEEECCEEEeeCcCcceEEeCcCCcceeeeceeecccCCCCC-C
Q 011141 407 TQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRG-P 485 (492)
Q Consensus 407 ~~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~p~~~f~~~~~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~-~ 485 (492)
....+.|.++|+....+|+|+|+|+|++|.|+|++|+++. ...|+++|+..+.+...+ +
T Consensus 231 ----------------~~~~~~~~~~C~~~~~~p~l~~~f~g~~~~v~~~~y~~~~----~~~C~~~i~~~~~~~~~~~~ 290 (318)
T cd05477 231 ----------------QDQYGQYVVNCNNIQNLPTLTFTINGVSFPLPPSAYILQN----NGYCTVGIEPTYLPSQNGQP 290 (318)
T ss_pred ----------------cccCCCEEEeCCccccCCcEEEEECCEEEEECHHHeEecC----CCeEEEEEEecccCCCCCCc
Confidence 1124678999999889999999999999999999999874 247999998765443333 5
Q ss_pred eEEEcCC
Q 011141 486 LWYVYSC 492 (492)
Q Consensus 486 ~~ilg~~ 492 (492)
.||||+.
T Consensus 291 ~~ilG~~ 297 (318)
T cd05477 291 LWILGDV 297 (318)
T ss_pred eEEEcHH
Confidence 7999973
No 10
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=1.4e-52 Score=436.86 Aligned_cols=301 Identities=31% Similarity=0.615 Sum_probs=260.0
Q ss_pred CcceEeceecCCceEEEEEEecCCCceEEEEEeCCCCCeeeeCCCCCCCccccCCCCCCCCCCCceeeCCceEEEEecCC
Q 011141 76 DADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTG 155 (492)
Q Consensus 76 ~~~~~~l~~~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g 155 (492)
....+||.|+.+.+|+++|+||||||+|.|+|||||+++||+|..|. ...|..++.|||++|+||+..++.+.+.|++|
T Consensus 126 ~~~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~-~~~C~~~~~yd~s~SsT~~~~~~~f~i~Yg~G 204 (453)
T PTZ00147 126 EFDNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCT-TEGCETKNLYDSSKSKTYEKDGTKVEMNYVSG 204 (453)
T ss_pred CCCeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCC-cccccCCCccCCccCcceEECCCEEEEEeCCC
Confidence 56789999999999999999999999999999999999999999996 56899999999999999999999999999999
Q ss_pred eeEeeEEEeEEEECceeecccEEEEEEecCCc--cccccccceeecCCcccccCCCCCchHHHHHhcCCCCCCeEEEEec
Q 011141 156 AISGFFSEDHVKIGDLVVKDQEFIEATREPSL--TFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFN 233 (492)
Q Consensus 156 s~~G~~~~D~v~~g~~~v~~~~fg~~~~~~~~--~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~l~ 233 (492)
+++|.+++|+|++|+.+++ ..|+++....+. .+....+|||||||++..+.....|++.+|++||+|++++||+||.
T Consensus 205 svsG~~~~DtVtiG~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~ 283 (453)
T PTZ00147 205 TVSGFFSKDLVTIGNLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLP 283 (453)
T ss_pred CEEEEEEEEEEEECCEEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHHHHHHHcCCCCccEEEEEec
Confidence 9999999999999999998 578887765432 2344578999999999888777889999999999999999999998
Q ss_pred CCCCCCCCcEEEeCcccCCCCcccceEEeccCccceEEEeceEEEcCccccccCCCceEEEcCCCCceeccHHHHHHHHH
Q 011141 234 RNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNH 313 (492)
Q Consensus 234 ~~~~~~~~G~L~fGgiD~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l~~ 313 (492)
+... ..|.|+|||+|+++|.|++.|+|+....+|.|.++ +.+++.. .....++|||||+++++|+++++++.+
T Consensus 284 ~~~~--~~G~L~fGGiD~~ky~G~l~y~pl~~~~~W~V~l~-~~vg~~~----~~~~~aIiDSGTsli~lP~~~~~ai~~ 356 (453)
T PTZ00147 284 PEDK--HKGYLTIGGIEERFYEGPLTYEKLNHDLYWQVDLD-VHFGNVS----SEKANVIVDSGTSVITVPTEFLNKFVE 356 (453)
T ss_pred CCCC--CCeEEEECCcChhhcCCceEEEEcCCCceEEEEEE-EEECCEe----cCceeEEECCCCchhcCCHHHHHHHHH
Confidence 6532 37999999999999999999999998899999998 4777643 245789999999999999999999999
Q ss_pred HhCCccccccccchhhcchhHHHHHHhhcccCcccccccccccccCCCCcccccccccccccCCCCCCCCCcccCchhHH
Q 011141 314 AIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEM 393 (492)
Q Consensus 314 ~i~~~~~~~~~C~~~~~~y~~~~~~~~~~~~~~~~~c~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 393 (492)
++++...
T Consensus 357 ~l~~~~~------------------------------------------------------------------------- 363 (453)
T PTZ00147 357 SLDVFKV------------------------------------------------------------------------- 363 (453)
T ss_pred HhCCeec-------------------------------------------------------------------------
Confidence 9876410
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHhhcccCCCCCCceeeeCccCCCCCcEEEEECCEEEeeCcCcceEEeCcCCcceeeec
Q 011141 394 AVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISG 473 (492)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~p~~~f~~~~~~~~l~~~~y~~~~~~~~~~~C~~~ 473 (492)
+..+.|.++|+. ..+|+++|.|+|..|+|+|++|+....+.+...|+++
T Consensus 364 ------------------------------~~~~~y~~~C~~-~~lP~~~f~f~g~~~~L~p~~yi~~~~~~~~~~C~~~ 412 (453)
T PTZ00147 364 ------------------------------PFLPLYVTTCNN-TKLPTLEFRSPNKVYTLEPEYYLQPIEDIGSALCMLN 412 (453)
T ss_pred ------------------------------CCCCeEEEeCCC-CCCCeEEEEECCEEEEECHHHheeccccCCCcEEEEE
Confidence 113457889996 5799999999999999999999987555445679999
Q ss_pred eeecccCCCCCCeEEEcCC
Q 011141 474 FSALDVAPPRGPLWYVYSC 492 (492)
Q Consensus 474 ~~~~~~~~~~~~~~ilg~~ 492 (492)
|++.+.. ++.|||||+
T Consensus 413 i~~~~~~---~~~~ILGd~ 428 (453)
T PTZ00147 413 IIPIDLE---KNTFILGDP 428 (453)
T ss_pred EEECCCC---CCCEEECHH
Confidence 9887632 357999984
No 11
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1.6e-51 Score=428.00 Aligned_cols=301 Identities=30% Similarity=0.632 Sum_probs=257.3
Q ss_pred CcceEeceecCCceEEEEEEecCCCceEEEEEeCCCCCeeeeCCCCCCCccccCCCCCCCCCCCceeeCCceEEEEecCC
Q 011141 76 DADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTG 155 (492)
Q Consensus 76 ~~~~~~l~~~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g 155 (492)
....++|.|+.+.+|+++|+||||||+|.|+|||||+++||++..|. ...|..++.|+|++|+|++..++.+.+.|++|
T Consensus 125 ~~~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~-~~~C~~~~~yd~s~SsT~~~~~~~~~i~YG~G 203 (450)
T PTZ00013 125 ENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCD-SIGCSIKNLYDSSKSKSYEKDGTKVDITYGSG 203 (450)
T ss_pred CCCceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCC-ccccccCCCccCccCcccccCCcEEEEEECCc
Confidence 56779999999999999999999999999999999999999999996 46899999999999999999999999999999
Q ss_pred eeEeeEEEeEEEECceeecccEEEEEEecCC--ccccccccceeecCCcccccCCCCCchHHHHHhcCCCCCCeEEEEec
Q 011141 156 AISGFFSEDHVKIGDLVVKDQEFIEATREPS--LTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFN 233 (492)
Q Consensus 156 s~~G~~~~D~v~~g~~~v~~~~fg~~~~~~~--~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~l~ 233 (492)
++.|.+++|+|++|+.+++ ..|+++..... ..+....++||||||++..+.....|++++|++||+|++++||+||.
T Consensus 204 sv~G~~~~Dtv~iG~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~ 282 (450)
T PTZ00013 204 TVKGFFSKDLVTLGHLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLP 282 (450)
T ss_pred eEEEEEEEEEEEECCEEEc-cEEEEEEeccccccceecccccceecccCCccccccCCCHHHHHHhccCcCCcEEEEEec
Confidence 9999999999999999987 57887765432 22344578999999999888777889999999999999999999998
Q ss_pred CCCCCCCCcEEEeCcccCCCCcccceEEeccCccceEEEeceEEEcCccccccCCCceEEEcCCCCceeccHHHHHHHHH
Q 011141 234 RNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNH 313 (492)
Q Consensus 234 ~~~~~~~~G~L~fGgiD~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l~~ 313 (492)
+.. ...|+|+|||+|+++|.|++.|+|+....+|.|.++ +.+|.... ....+++||||+++++|.++++++++
T Consensus 283 ~~~--~~~G~L~fGGiD~~~y~G~L~y~pv~~~~yW~I~l~-v~~G~~~~----~~~~aIlDSGTSli~lP~~~~~~i~~ 355 (450)
T PTZ00013 283 VHD--VHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQTM----QKANVIVDSGTTTITAPSEFLNKFFA 355 (450)
T ss_pred CCC--CCCCEEEECCcCccccccceEEEEcCcCceEEEEEE-EEECceec----cccceEECCCCccccCCHHHHHHHHH
Confidence 653 237999999999999999999999998899999998 66664332 35679999999999999999999999
Q ss_pred HhCCccccccccchhhcchhHHHHHHhhcccCcccccccccccccCCCCcccccccccccccCCCCCCCCCcccCchhHH
Q 011141 314 AIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEM 393 (492)
Q Consensus 314 ~i~~~~~~~~~C~~~~~~y~~~~~~~~~~~~~~~~~c~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 393 (492)
++++...
T Consensus 356 ~l~~~~~------------------------------------------------------------------------- 362 (450)
T PTZ00013 356 NLNVIKV------------------------------------------------------------------------- 362 (450)
T ss_pred HhCCeec-------------------------------------------------------------------------
Confidence 9876410
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHhhcccCCCCCCceeeeCccCCCCCcEEEEECCEEEeeCcCcceEEeCcCCcceeeec
Q 011141 394 AVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISG 473 (492)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~p~~~f~~~~~~~~l~~~~y~~~~~~~~~~~C~~~ 473 (492)
+..+.|.++|+. ..+|+|+|.|+|.+++|+|++|+......+...|+++
T Consensus 363 ------------------------------~~~~~y~~~C~~-~~lP~i~F~~~g~~~~L~p~~Yi~~~~~~~~~~C~~~ 411 (450)
T PTZ00013 363 ------------------------------PFLPFYVTTCDN-KEMPTLEFKSANNTYTLEPEYYMNPLLDVDDTLCMIT 411 (450)
T ss_pred ------------------------------CCCCeEEeecCC-CCCCeEEEEECCEEEEECHHHheehhccCCCCeeEEE
Confidence 124568899985 5789999999999999999999986443334579999
Q ss_pred eeecccCCCCCCeEEEcCC
Q 011141 474 FSALDVAPPRGPLWYVYSC 492 (492)
Q Consensus 474 ~~~~~~~~~~~~~~ilg~~ 492 (492)
|.+.+. .++.|||||+
T Consensus 412 i~~~~~---~~~~~ILGd~ 427 (450)
T PTZ00013 412 MLPVDI---DDNTFILGDP 427 (450)
T ss_pred EEECCC---CCCCEEECHH
Confidence 988653 2357999984
No 12
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=1.1e-47 Score=386.50 Aligned_cols=294 Identities=37% Similarity=0.705 Sum_probs=259.8
Q ss_pred eEEEEEEecCCCceEEEEEeCCCCCeeeeCCCCCCCccccCCCCCCCCCCCceeeCCceEEEEecCCeeEeeEEEeEEEE
Q 011141 89 QYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKI 168 (492)
Q Consensus 89 ~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~~G~~~~D~v~~ 168 (492)
+|+++|.||||+|+++|++||||+++||++..|..+..|..+..|++++|+|++..++.+.+.|++|+++|.++.|+|+|
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~~~~~~~y~~g~~~G~~~~D~v~i 80 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQGKPFSISYGDGSVSGNLVSDTVSI 80 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccceeeeeeeccCcccccccccceEee
Confidence 59999999999999999999999999999999963235788899999999999999999999999999999999999999
Q ss_pred CceeecccEEEEEEecCCccccccccceeecCCcccccCCC-CCchHHHHHhcCCCCCCeEEEEecCCCCCCCCcEEEeC
Q 011141 169 GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGK-AVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFG 247 (492)
Q Consensus 169 g~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~-~~~~~~~L~~qg~I~~~~FSl~l~~~~~~~~~G~L~fG 247 (492)
|+..++++.||++....+..+....++||||||++..+... ..+++++|++||+|++++||++|++.. ...|.|+||
T Consensus 81 g~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~fsl~l~~~~--~~~g~l~~G 158 (317)
T PF00026_consen 81 GGLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNVFSLYLNPSD--SQNGSLTFG 158 (317)
T ss_dssp TTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSEEEEEEESTT--SSEEEEEES
T ss_pred eeccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhccccccccceeeeecc--cccchheee
Confidence 99999999999999866555567788999999988776654 788999999999999999999999875 347999999
Q ss_pred cccCCCCcccceEEeccCccceEEEeceEEEcCccccccCCCceEEEcCCCCceeccHHHHHHHHHHhCCccccccccch
Q 011141 248 GMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKA 327 (492)
Q Consensus 248 giD~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l~~~i~~~~~~~~~C~~ 327 (492)
|+|+++|.|++.|+|+...++|.+.+++|.+++... .......++||||++++.+|.+++++|++++++...
T Consensus 159 g~d~~~~~g~~~~~~~~~~~~w~v~~~~i~i~~~~~-~~~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~------- 230 (317)
T PF00026_consen 159 GYDPSKYDGDLVWVPLVSSGYWSVPLDSISIGGESV-FSSSGQQAILDTGTSYIYLPRSIFDAIIKALGGSYS------- 230 (317)
T ss_dssp SEEGGGEESEEEEEEBSSTTTTEEEEEEEEETTEEE-EEEEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEEE-------
T ss_pred ccccccccCceeccCccccccccccccccccccccc-ccccceeeecccccccccccchhhHHHHhhhccccc-------
Confidence 999999999999999999999999999999999832 244567899999999999999999999999987721
Q ss_pred hhcchhHHHHHHhhcccCcccccccccccccCCCCcccccccccccccCCCCCCCCCcccCchhHHHHHHHHHHHhhhch
Q 011141 328 VVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQT 407 (492)
Q Consensus 328 ~~~~y~~~~~~~~~~~~~~~~~c~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~ 407 (492)
T Consensus 231 -------------------------------------------------------------------------------- 230 (317)
T PF00026_consen 231 -------------------------------------------------------------------------------- 230 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhcccCCCCCCceeeeCccCCCCCcEEEEECCEEEeeCcCcceEEeCcCCcceeeeceeecccCCCCCCeE
Q 011141 408 QERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLW 487 (492)
Q Consensus 408 ~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~p~~~f~~~~~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ 487 (492)
.+.|.++|+....+|.|+|.|++.+|+|+|++|+++..+.....|++.|+..+. ....+.|
T Consensus 231 ------------------~~~~~~~c~~~~~~p~l~f~~~~~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~~-~~~~~~~ 291 (317)
T PF00026_consen 231 ------------------DGVYSVPCNSTDSLPDLTFTFGGVTFTIPPSDYIFKIEDGNGGYCYLGIQPMDS-SDDSDDW 291 (317)
T ss_dssp ------------------CSEEEEETTGGGGSEEEEEEETTEEEEEEHHHHEEEESSTTSSEEEESEEEESS-TTSSSEE
T ss_pred ------------------ceeEEEecccccccceEEEeeCCEEEEecchHhcccccccccceeEeeeecccc-cccCCce
Confidence 157899999988899999999999999999999999877655689999999775 4456789
Q ss_pred EEcC
Q 011141 488 YVYS 491 (492)
Q Consensus 488 ilg~ 491 (492)
|||.
T Consensus 292 iLG~ 295 (317)
T PF00026_consen 292 ILGS 295 (317)
T ss_dssp EEEH
T ss_pred EecH
Confidence 9995
No 13
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-46 Score=384.38 Aligned_cols=299 Identities=41% Similarity=0.774 Sum_probs=247.5
Q ss_pred ceEeceecCCceEEEEEEecCCCceEEEEEeCCCCCeeeeCCCCCCCccccC-CCC-CCCCCCCceeeCCce--------
Q 011141 78 DIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYF-HSK-YRSGRSSTYKKNGKS-------- 147 (492)
Q Consensus 78 ~~~~l~~~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~-~~~-y~~~~SsT~~~~~~~-------- 147 (492)
...++..+.+.+|+++|.||||||+|.|++||||+++||+|..|.. .|.. +.. |+|++|+||+...|.
T Consensus 35 ~~~~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~--~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~ 112 (398)
T KOG1339|consen 35 LPESLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSS--ACYSQHNPIFDPSASSTYKSVGCSSPRCKSLP 112 (398)
T ss_pred cccccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccc--cccccCCCccCccccccccccCCCCccccccc
Confidence 3456677778899999999999999999999999999999999952 6875 455 999999999987743
Q ss_pred ----------EEEEecCC-eeEeeEEEeEEEECc---eeecccEEEEEEecCCccccc-cccceeecCCcccccCCCCCc
Q 011141 148 ----------ADIHYGTG-AISGFFSEDHVKIGD---LVVKDQEFIEATREPSLTFLL-AKFDGILGLGFQEISVGKAVP 212 (492)
Q Consensus 148 ----------~~i~Yg~g-s~~G~~~~D~v~~g~---~~v~~~~fg~~~~~~~~~~~~-~~~dGIlGLg~~~~s~~~~~~ 212 (492)
|.+.|++| +++|.+++|+|++++ ..++++.|||+....+. +.. .+++||||||+...+.....+
T Consensus 113 ~~~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~~~q~~ 191 (398)
T KOG1339|consen 113 QSCSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSVPSQLP 191 (398)
T ss_pred cCcccCCcCceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccc-cccccccceEeecCCCCccceeecc
Confidence 99999995 589999999999998 88888999999988765 444 678999999999988655433
Q ss_pred hHHHHHhcCCCCCCeEEEEecCCCCC-CCCcEEEeCcccCCCCcccceEEeccCcc--ceEEEeceEEEcCcc----ccc
Q 011141 213 VWYNMVNQGLVNEPVFSFWFNRNADE-EEGGEIVFGGMDPDHYKGEHTYVPVTQKG--YWQFDMGDVMIDGQT----TGF 285 (492)
Q Consensus 213 ~~~~L~~qg~I~~~~FSl~l~~~~~~-~~~G~L~fGgiD~~~~~g~l~~~p~~~~~--~w~v~l~~i~vg~~~----~~~ 285 (492)
.+.++ .++||+||.+.... ..+|.|+||++|+.++.+.+.|+|+.... +|.+.+.+|+|+++. ..+
T Consensus 192 ~~~~~-------~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~~ 264 (398)
T KOG1339|consen 192 SFYNA-------INVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGSSLF 264 (398)
T ss_pred cccCC-------ceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCcceE
Confidence 33222 23899999987533 24899999999999999999999998877 999999999999843 222
Q ss_pred cCCCceEEEcCCCCceeccHHHHHHHHHHhCCccccccccchhhcchhHHHHHHhhcccCcccccccccccccCCCCccc
Q 011141 286 CAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVS 365 (492)
Q Consensus 286 ~~~~~~aiiDTGtt~i~lP~~~~~~l~~~i~~~~~~~~~C~~~~~~y~~~~~~~~~~~~~~~~~c~~~~~C~~~~~~~~~ 365 (492)
+.....+++||||+++++|.++|++|.+++++..
T Consensus 265 ~~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~---------------------------------------------- 298 (398)
T KOG1339|consen 265 CTDGGGAIIDSGTSLTYLPTSAYNALREAIGAEV---------------------------------------------- 298 (398)
T ss_pred ecCCCCEEEECCcceeeccHHHHHHHHHHHHhhe----------------------------------------------
Confidence 3335889999999999999999999999998750
Q ss_pred ccccccccccCCCCCCCCCcccCchhHHHHHHHHHHHhhhchHHHHHHHHHhhcccCCCCCCceeeeCccCCC----CCc
Q 011141 366 MGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSS----LPI 441 (492)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~----~p~ 441 (492)
++....+.|.++|..... +|.
T Consensus 299 -------------------------------------------------------~~~~~~~~~~~~C~~~~~~~~~~P~ 323 (398)
T KOG1339|consen 299 -------------------------------------------------------SVVGTDGEYFVPCFSISTSGVKLPD 323 (398)
T ss_pred -------------------------------------------------------eccccCCceeeecccCCCCcccCCc
Confidence 001236678889998887 999
Q ss_pred EEEEEC-CEEEeeCcCcceEEeCcCCcceeeeceeecccCCCCCCeEEEcCC
Q 011141 442 VSFTIG-GKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWYVYSC 492 (492)
Q Consensus 442 ~~f~~~-~~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilg~~ 492 (492)
|+|+|+ |+.|.|++++|++++.+.... |++.+...+.+ +.|||||+
T Consensus 324 i~~~f~~g~~~~l~~~~y~~~~~~~~~~-Cl~~~~~~~~~----~~~ilG~~ 370 (398)
T KOG1339|consen 324 ITFHFGGGAVFSLPPKNYLVEVSDGGGV-CLAFFNGMDSG----PLWILGDV 370 (398)
T ss_pred EEEEECCCcEEEeCccceEEEECCCCCc-eeeEEecCCCC----ceEEEchH
Confidence 999999 899999999999998765322 99999887733 78999984
No 14
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=4e-44 Score=354.76 Aligned_cols=220 Identities=35% Similarity=0.526 Sum_probs=193.1
Q ss_pred EEEEEEecCCCceEEEEEeCCCCCeeeeCCCCCCCccccCCCCCCCCCCCceee-CCceEEEEecCCe-eEeeEEEeEEE
Q 011141 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKK-NGKSADIHYGTGA-ISGFFSEDHVK 167 (492)
Q Consensus 90 Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~-~~~~~~i~Yg~gs-~~G~~~~D~v~ 167 (492)
|+++|+||||||++.|+|||||+++||++..|. ...|..++.|++++|+|++. .++.+.+.|++|+ +.|.+++|+|+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~-~~~~~~~~~y~~~~Sst~~~~~~~~~~i~Y~~G~~~~G~~~~D~v~ 79 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETP-AAQQGGHKLYDPSKSSTAKLLPGATWSISYGDGSSASGIVYTDTVS 79 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCC-chhhccCCcCCCccCccceecCCcEEEEEeCCCCeEEEEEEEEEEE
Confidence 789999999999999999999999999999996 33456677899999999986 4789999999997 89999999999
Q ss_pred ECceeecccEEEEEEecCCccccccccceeecCCcccccCC---CCCchHHHHHhcCCCCCCeEEEEecCCCCCCCCcEE
Q 011141 168 IGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVG---KAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEI 244 (492)
Q Consensus 168 ~g~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~---~~~~~~~~L~~qg~I~~~~FSl~l~~~~~~~~~G~L 244 (492)
||+.+++++.||+++......+....++||||||++..+.. ...+++++|.+|+. +++||+||.+.. .|+|
T Consensus 80 ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~--~~~Fs~~l~~~~----~G~l 153 (278)
T cd06097 80 IGGVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD--APLFTADLRKAA----PGFY 153 (278)
T ss_pred ECCEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc--CceEEEEecCCC----CcEE
Confidence 99999999999999876654455567899999999876542 35678999999965 899999998632 7999
Q ss_pred EeCcccCCCCcccceEEeccC-ccceEEEeceEEEcCccccccCCCceEEEcCCCCceeccHHHHHHHHHHhCC
Q 011141 245 VFGGMDPDHYKGEHTYVPVTQ-KGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGA 317 (492)
Q Consensus 245 ~fGgiD~~~~~g~l~~~p~~~-~~~w~v~l~~i~vg~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l~~~i~~ 317 (492)
+|||+|+++|.|++.|+|+.. .++|.|.+++|.|+++... ...+..++|||||+++++|.+++++|++++++
T Consensus 154 ~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~-~~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g 226 (278)
T cd06097 154 TFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPW-SRSGFSAIADTGTTLILLPDAIVEAYYSQVPG 226 (278)
T ss_pred EEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCccee-ecCCceEEeecCCchhcCCHHHHHHHHHhCcC
Confidence 999999999999999999986 7899999999999987432 34678899999999999999999999999843
No 15
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=5.9e-44 Score=366.68 Aligned_cols=223 Identities=30% Similarity=0.491 Sum_probs=185.2
Q ss_pred ceEEEEEEecCCCceEEEEEeCCCCCeeeeCCCCCCCccccCCCCCCCCCCCceeeCCceEEEEecCCeeEeeEEEeEEE
Q 011141 88 AQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVK 167 (492)
Q Consensus 88 ~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~~G~~~~D~v~ 167 (492)
..|+++|.||||+|+|.|+|||||+++||++..| |..++.|+|++|+||+..++.|.+.|++|+++|.+++|+|+
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~-----~~~~~~f~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~D~v~ 76 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPH-----PFIHTYFHRELSSTYRDLGKGVTVPYTQGSWEGELGTDLVS 76 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCC-----ccccccCCchhCcCcccCCceEEEEECcceEEEEEEEEEEE
Confidence 4699999999999999999999999999999877 33467999999999999999999999999999999999999
Q ss_pred ECceeecccE----EEEEEecCCccccccccceeecCCcccccC--CCCCchHHHHHhcCCCCCCeEEEEecCCC-----
Q 011141 168 IGDLVVKDQE----FIEATREPSLTFLLAKFDGILGLGFQEISV--GKAVPVWYNMVNQGLVNEPVFSFWFNRNA----- 236 (492)
Q Consensus 168 ~g~~~v~~~~----fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~--~~~~~~~~~L~~qg~I~~~~FSl~l~~~~----- 236 (492)
||+. .++. |+++....+.......++||||||++.++. ....|++++|++|+.+ .++||+||+...
T Consensus 77 ig~~--~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~-~~~FS~~l~~~~~~~~~ 153 (364)
T cd05473 77 IPKG--PNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGI-PDVFSLQMCGAGLPVNG 153 (364)
T ss_pred ECCC--CccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCC-ccceEEEeccccccccc
Confidence 9863 2333 344443332212223679999999998764 2467899999999987 579999986421
Q ss_pred --CCCCCcEEEeCcccCCCCcccceEEeccCccceEEEeceEEEcCccccccCC---CceEEEcCCCCceeccHHHHHHH
Q 011141 237 --DEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAG---GCAAIADSGTSLLAGPTTIITQV 311 (492)
Q Consensus 237 --~~~~~G~L~fGgiD~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~~~~---~~~aiiDTGtt~i~lP~~~~~~l 311 (492)
.....|+|+|||+|+++|.|++.|+|+....+|.|.+++|.|++..+..... ...++|||||+++++|.+++++|
T Consensus 154 ~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTs~~~lp~~~~~~l 233 (364)
T cd05473 154 SASGTVGGSMVIGGIDPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLDCKEYNYDKAIVDSGTTNLRLPVKVFNAA 233 (364)
T ss_pred ccccCCCcEEEeCCcCHhhcCCCceEEecCcceeEEEEEEEEEECCEecccccccccCccEEEeCCCcceeCCHHHHHHH
Confidence 1224799999999999999999999999889999999999999987754321 24699999999999999999999
Q ss_pred HHHhCCc
Q 011141 312 NHAIGAT 318 (492)
Q Consensus 312 ~~~i~~~ 318 (492)
.+++++.
T Consensus 234 ~~~l~~~ 240 (364)
T cd05473 234 VDAIKAA 240 (364)
T ss_pred HHHHHhh
Confidence 9999765
No 16
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=3e-43 Score=367.35 Aligned_cols=216 Identities=24% Similarity=0.417 Sum_probs=175.5
Q ss_pred CCceEEEEEEecCCCceEEEEEeCCCCCeeeeCCCCCCCcccc--CCCCCCCCCCCceeeCC------------------
Q 011141 86 MDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACY--FHSKYRSGRSSTYKKNG------------------ 145 (492)
Q Consensus 86 ~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~--~~~~y~~~~SsT~~~~~------------------ 145 (492)
.+.+|+++|.||||||++.|++||||+++||+|.+|. .|. .++.|||++|+||+...
T Consensus 81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~---~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~ 157 (431)
T PLN03146 81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCD---DCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDE 157 (431)
T ss_pred CCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCc---ccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCC
Confidence 3578999999999999999999999999999999995 676 45799999999998642
Q ss_pred --ceEEEEecCCe-eEeeEEEeEEEECc-----eeecccEEEEEEecCCccccccccceeecCCcccccCCCCCchHHHH
Q 011141 146 --KSADIHYGTGA-ISGFFSEDHVKIGD-----LVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNM 217 (492)
Q Consensus 146 --~~~~i~Yg~gs-~~G~~~~D~v~~g~-----~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L 217 (492)
|.|.+.|++|+ +.|.+++|+|+|++ ..++++.|||+....+. |. ...+||||||+...+ ++.+|
T Consensus 158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~-f~-~~~~GilGLG~~~~S------l~sql 229 (431)
T PLN03146 158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGT-FD-EKGSGIVGLGGGPLS------LISQL 229 (431)
T ss_pred CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCC-cc-CCCceeEecCCCCcc------HHHHh
Confidence 78999999998 58999999999997 46889999999876542 32 257999999998766 55666
Q ss_pred HhcCCCCCCeEEEEecCCC-CCCCCcEEEeCcccCCCCcc-cceEEeccC---ccceEEEeceEEEcCccccccCC----
Q 011141 218 VNQGLVNEPVFSFWFNRNA-DEEEGGEIVFGGMDPDHYKG-EHTYVPVTQ---KGYWQFDMGDVMIDGQTTGFCAG---- 288 (492)
Q Consensus 218 ~~qg~I~~~~FSl~l~~~~-~~~~~G~L~fGgiD~~~~~g-~l~~~p~~~---~~~w~v~l~~i~vg~~~~~~~~~---- 288 (492)
..+ +. ++||+||.+.. +....|.|+||+. .++.| .+.|+|+.. +.+|.|.+++|+||++.+.++..
T Consensus 230 ~~~--~~-~~FSycL~~~~~~~~~~g~l~fG~~--~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~ 304 (431)
T PLN03146 230 GSS--IG-GKFSYCLVPLSSDSNGTSKINFGTN--AIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNG 304 (431)
T ss_pred hHh--hC-CcEEEECCCCCCCCCCcceEEeCCc--cccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCcccccc
Confidence 543 43 59999997532 2234799999984 45544 489999964 47999999999999987754322
Q ss_pred --CceEEEcCCCCceeccHHHHHHHHHHhCC
Q 011141 289 --GCAAIADSGTSLLAGPTTIITQVNHAIGA 317 (492)
Q Consensus 289 --~~~aiiDTGtt~i~lP~~~~~~l~~~i~~ 317 (492)
...+||||||++++||.++|++|.+++..
T Consensus 305 ~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~ 335 (431)
T PLN03146 305 VEEGNIIIDSGTTLTLLPSDFYSELESAVEE 335 (431)
T ss_pred CCCCcEEEeCCccceecCHHHHHHHHHHHHH
Confidence 24699999999999999999998887743
No 17
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=8.1e-42 Score=340.89 Aligned_cols=257 Identities=29% Similarity=0.518 Sum_probs=220.4
Q ss_pred eEEEEEEecCCCceEEEEEeCCCCCeeeeCCCCCCCccccCCCCCCCCCCCceeeCCceEEEEecCC-eeEeeEEEeEEE
Q 011141 89 QYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTG-AISGFFSEDHVK 167 (492)
Q Consensus 89 ~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g-s~~G~~~~D~v~ 167 (492)
.|+++|.||||+|++.|++||||+++||+ .|.+.|++| ++.|.+++|+|+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-----------------------------~~~~~Y~~g~~~~G~~~~D~v~ 52 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-----------------------------DFSISYGDGTSASGTWGTDTVS 52 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-----------------------------eeEEEeccCCcEEEEEEEEEEE
Confidence 69999999999999999999999999996 678899995 589999999999
Q ss_pred ECceeecccEEEEEEecCCccccccccceeecCCcccccC-----CCCCchHHHHHhcCCCCCCeEEEEecCCCCCCCCc
Q 011141 168 IGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV-----GKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGG 242 (492)
Q Consensus 168 ~g~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~-----~~~~~~~~~L~~qg~I~~~~FSl~l~~~~~~~~~G 242 (492)
+++..++++.||++.... ..+||||||++..+. ...++++++|.+||+|++++||+||.+.. ...|
T Consensus 53 ~g~~~~~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~--~~~g 123 (295)
T cd05474 53 IGGATVKNLQFAVANSTS-------SDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNAYSLYLNDLD--ASTG 123 (295)
T ss_pred ECCeEecceEEEEEecCC-------CCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceEEEEEeCCCC--CCce
Confidence 999999999999998632 358999999988743 34567999999999999999999998753 2379
Q ss_pred EEEeCcccCCCCcccceEEeccCc------cceEEEeceEEEcCcccc--ccCCCceEEEcCCCCceeccHHHHHHHHHH
Q 011141 243 EIVFGGMDPDHYKGEHTYVPVTQK------GYWQFDMGDVMIDGQTTG--FCAGGCAAIADSGTSLLAGPTTIITQVNHA 314 (492)
Q Consensus 243 ~L~fGgiD~~~~~g~l~~~p~~~~------~~w~v~l~~i~vg~~~~~--~~~~~~~aiiDTGtt~i~lP~~~~~~l~~~ 314 (492)
.|+|||+|+++|.|++.|+|+... .+|.|.+++|++++.... .......++|||||+++++|.+++++|.++
T Consensus 124 ~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiDSGt~~~~lP~~~~~~l~~~ 203 (295)
T cd05474 124 SILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLDSGTTLTYLPSDIVDAIAKQ 203 (295)
T ss_pred eEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEECCCCccEeCCHHHHHHHHHH
Confidence 999999999999999999999765 789999999999998753 234567899999999999999999999999
Q ss_pred hCCccccccccchhhcchhHHHHHHhhcccCcccccccccccccCCCCcccccccccccccCCCCCCCCCcccCchhHHH
Q 011141 315 IGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMA 394 (492)
Q Consensus 315 i~~~~~~~~~C~~~~~~y~~~~~~~~~~~~~~~~~c~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~ 394 (492)
+++...
T Consensus 204 ~~~~~~-------------------------------------------------------------------------- 209 (295)
T cd05474 204 LGATYD-------------------------------------------------------------------------- 209 (295)
T ss_pred hCCEEc--------------------------------------------------------------------------
Confidence 977610
Q ss_pred HHHHHHHHhhhchHHHHHHHHHhhcccCCCCCCceeeeCccCCCCCcEEEEECCEEEeeCcCcceEEeCc--CCcceeee
Q 011141 395 VVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGE--GDAAQCIS 472 (492)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~p~~~f~~~~~~~~l~~~~y~~~~~~--~~~~~C~~ 472 (492)
...+.|.++|+.... |+|+|+|+|.+|.|++++|+++... .....|++
T Consensus 210 -----------------------------~~~~~~~~~C~~~~~-p~i~f~f~g~~~~i~~~~~~~~~~~~~~~~~~C~~ 259 (295)
T cd05474 210 -----------------------------SDEGLYVVDCDAKDD-GSLTFNFGGATISVPLSDLVLPASTDDGGDGACYL 259 (295)
T ss_pred -----------------------------CCCcEEEEeCCCCCC-CEEEEEECCeEEEEEHHHhEeccccCCCCCCCeEE
Confidence 113568899998777 9999999999999999999998642 23467999
Q ss_pred ceeecccCCCCCCeEEEcCC
Q 011141 473 GFSALDVAPPRGPLWYVYSC 492 (492)
Q Consensus 473 ~~~~~~~~~~~~~~~ilg~~ 492 (492)
+|+..+. +.||||+.
T Consensus 260 ~i~~~~~-----~~~iLG~~ 274 (295)
T cd05474 260 GIQPSTS-----DYNILGDT 274 (295)
T ss_pred EEEeCCC-----CcEEeChH
Confidence 9988762 57999973
No 18
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=3e-42 Score=348.83 Aligned_cols=215 Identities=30% Similarity=0.465 Sum_probs=180.0
Q ss_pred ceEEEEEEecCCCceEEEEEeCCCCCeeeeCCCCCCCcccc--CCCCCCCCCCCceeeC----------------CceEE
Q 011141 88 AQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACY--FHSKYRSGRSSTYKKN----------------GKSAD 149 (492)
Q Consensus 88 ~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~--~~~~y~~~~SsT~~~~----------------~~~~~ 149 (492)
.+|+++|+||||+|++.|+|||||+++||+|..|. .|. .++.|+|++|+|++.. .+.|.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~---~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~~~~~~~~~~~~ 78 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCK---NCGIHMEPPYNLNNSITSSILYCDCNKCCYCLSCLNNKCEYS 78 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCC---CcCCCCCCCcCcccccccccccCCCccccccCcCCCCcCcEE
Confidence 47999999999999999999999999999999996 454 4578999999999863 56899
Q ss_pred EEecCCe-eEeeEEEeEEEECceeec-------ccEEEEEEecCCccccccccceeecCCcccccCCCCCchHHHHHhcC
Q 011141 150 IHYGTGA-ISGFFSEDHVKIGDLVVK-------DQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQG 221 (492)
Q Consensus 150 i~Yg~gs-~~G~~~~D~v~~g~~~v~-------~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg 221 (492)
+.|++|+ +.|.+++|+|+||+..++ ++.|||+....+ .|.....+||||||+...+. ..+.+..|++++
T Consensus 79 i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~--~~~~~~~l~~~~ 155 (326)
T cd06096 79 ISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETN-LFLTQQATGILGLSLTKNNG--LPTPIILLFTKR 155 (326)
T ss_pred EEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccC-cccccccceEEEccCCcccc--cCchhHHHHHhc
Confidence 9999997 799999999999987653 467999887654 24455789999999986542 233455588887
Q ss_pred CCCC--CeEEEEecCCCCCCCCcEEEeCcccCCCCc----------ccceEEeccCccceEEEeceEEEcCccc-cccCC
Q 011141 222 LVNE--PVFSFWFNRNADEEEGGEIVFGGMDPDHYK----------GEHTYVPVTQKGYWQFDMGDVMIDGQTT-GFCAG 288 (492)
Q Consensus 222 ~I~~--~~FSl~l~~~~~~~~~G~L~fGgiD~~~~~----------g~l~~~p~~~~~~w~v~l~~i~vg~~~~-~~~~~ 288 (492)
.+.. ++||+||.+. .|.|+|||+|++++. +++.|+|+..+.+|.|.+++|+|+++.. .....
T Consensus 156 ~~~~~~~~FS~~l~~~-----~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~v~l~~i~vg~~~~~~~~~~ 230 (326)
T cd06096 156 PKLKKDKIFSICLSED-----GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNSGNTK 230 (326)
T ss_pred ccccCCceEEEEEcCC-----CeEEEECccChhhhcccccccccccCCceEEeccCCceEEEEEEEEEEcccccceeccc
Confidence 7665 9999999864 699999999999987 8899999998899999999999998861 12345
Q ss_pred CceEEEcCCCCceeccHHHHHHHHH
Q 011141 289 GCAAIADSGTSLLAGPTTIITQVNH 313 (492)
Q Consensus 289 ~~~aiiDTGtt~i~lP~~~~~~l~~ 313 (492)
...++|||||+++++|++++++|.+
T Consensus 231 ~~~aivDSGTs~~~lp~~~~~~l~~ 255 (326)
T cd06096 231 GLGMLVDSGSTLSHFPEDLYNKINN 255 (326)
T ss_pred CCCEEEeCCCCcccCCHHHHHHHHh
Confidence 6789999999999999999988754
No 19
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=4.5e-41 Score=336.37 Aligned_cols=191 Identities=26% Similarity=0.461 Sum_probs=161.3
Q ss_pred eEEEEEEecCCCceEEEEEeCCCCCeeeeCCCCCCCccccCCCCCCCCCCCceeeCCceEEEEecCCe-eEeeEEEeEEE
Q 011141 89 QYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA-ISGFFSEDHVK 167 (492)
Q Consensus 89 ~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs-~~G~~~~D~v~ 167 (492)
+|+++|.||||||++.|+|||||+++||+|..| +.|.+.|++|+ ++|.+++|+|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c------------------------~~~~i~Yg~Gs~~~G~~~~D~v~ 56 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC------------------------CLYQVSYGDGSYTTGDLATDTLT 56 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC------------------------CeeeeEeCCCceEEEEEEEEEEE
Confidence 599999999999999999999999999976543 68999999998 58999999999
Q ss_pred ECce-eecccEEEEEEecCCccccccccceeecCCcccccCCCCCchHHHHHhcCCCCCCeEEEEecCCCCCCCCcEEEe
Q 011141 168 IGDL-VVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVF 246 (492)
Q Consensus 168 ~g~~-~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~l~~~~~~~~~G~L~f 246 (492)
||+. .++++.||++....+. + ...+||||||+...+ +..++..+ .+++||+||.+.. ...+|+|+|
T Consensus 57 ig~~~~~~~~~Fg~~~~~~~~-~--~~~~GilGLg~~~~s------~~~ql~~~---~~~~FS~~L~~~~-~~~~G~l~f 123 (299)
T cd05472 57 LGSSDVVPGFAFGCGHDNEGL-F--GGAAGLLGLGRGKLS------LPSQTASS---YGGVFSYCLPDRS-SSSSGYLSF 123 (299)
T ss_pred eCCCCccCCEEEECCccCCCc-c--CCCCEEEECCCCcch------HHHHhhHh---hcCceEEEccCCC-CCCCceEEe
Confidence 9998 8999999999876542 2 267999999987665 44455544 2689999998743 133799999
Q ss_pred CcccCCCCcccceEEeccCc----cceEEEeceEEEcCcccccc---CCCceEEEcCCCCceeccHHHHHHHHHHhCCc
Q 011141 247 GGMDPDHYKGEHTYVPVTQK----GYWQFDMGDVMIDGQTTGFC---AGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 318 (492)
Q Consensus 247 GgiD~~~~~g~l~~~p~~~~----~~w~v~l~~i~vg~~~~~~~---~~~~~aiiDTGtt~i~lP~~~~~~l~~~i~~~ 318 (492)
||+|++ .|++.|+|+... .+|.|++++|+||++.+... .....++|||||+++++|.+++++|.+++++.
T Consensus 124 Gg~d~~--~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~ 200 (299)
T cd05472 124 GAAASV--PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAALRDAFRAA 200 (299)
T ss_pred CCcccc--CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHHHHHHHHHHH
Confidence 999999 999999999753 68999999999999877542 23567999999999999999999999998654
No 20
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=3.7e-39 Score=318.90 Aligned_cols=227 Identities=47% Similarity=0.866 Sum_probs=199.5
Q ss_pred EEEEEEecCCCceEEEEEeCCCCCeeeeCCCCCCCccccCCCC--CCCCCCCceeeCCceEEEEecCCeeEeeEEEeEEE
Q 011141 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSK--YRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVK 167 (492)
Q Consensus 90 Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~--y~~~~SsT~~~~~~~~~i~Yg~gs~~G~~~~D~v~ 167 (492)
|+++|.||+|+|++.|++||||+++||+|..|. ...|..... |++..|+++....+.+.+.|++|++.|.+++|+|+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~Y~~g~~~g~~~~D~v~ 79 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCT-SCSCQKHPRFKYDSSKSSTYKDTGCTFSITYGDGSVTGGLGTDTVT 79 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCC-ccccccCCCCccCccCCceeecCCCEEEEEECCCeEEEEEEEeEEE
Confidence 789999999999999999999999999999996 223333333 89999999999999999999999999999999999
Q ss_pred ECceeecccEEEEEEecCCccccccccceeecCCcccccCCCCCchHHHHHhcCCCCCCeEEEEecCCCCCCCCcEEEeC
Q 011141 168 IGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFG 247 (492)
Q Consensus 168 ~g~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~l~~~~~~~~~G~L~fG 247 (492)
|++..++++.||++..... .+.....+||||||+...+.....+++++|.+++.|.+++||+||.+.......|.|+||
T Consensus 80 ~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~G 158 (283)
T cd05471 80 IGGLTIPNQTFGCATSESG-DFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFG 158 (283)
T ss_pred ECCEEEeceEEEEEeccCC-cccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEc
Confidence 9999999999999997764 344567899999999987766678899999999999999999999985322348999999
Q ss_pred cccCCCCcccceEEeccC--ccceEEEeceEEEcCccccccCCCceEEEcCCCCceeccHHHHHHHHHHhCCc
Q 011141 248 GMDPDHYKGEHTYVPVTQ--KGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 318 (492)
Q Consensus 248 giD~~~~~g~l~~~p~~~--~~~w~v~l~~i~vg~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l~~~i~~~ 318 (492)
|+|++++.+++.|+|+.. ..+|.|.+++|.+++...........++|||||+++++|.+++++|++++.+.
T Consensus 159 g~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~ 231 (283)
T cd05471 159 GIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVYDAILKALGAA 231 (283)
T ss_pred ccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCc
Confidence 999999999999999988 78999999999999973222346778999999999999999999999999876
No 21
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1.4e-37 Score=307.10 Aligned_cols=183 Identities=26% Similarity=0.405 Sum_probs=153.6
Q ss_pred eEEEEEEecCCCceEEEEEeCCCCCeeeeCC-CCCCCccccCCCCCCCCCCCceeeCCceEEEEecCC-eeEeeEEEeEE
Q 011141 89 QYFGEIGIGTPPQNFTVIFDTGSSNLWVPSS-KCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTG-AISGFFSEDHV 166 (492)
Q Consensus 89 ~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~-~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g-s~~G~~~~D~v 166 (492)
+|+++|.||||||++.|++||||+++||+|. .|. .| .|.|.+.|+++ +++|.+++|+|
T Consensus 2 ~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~---~c-----------------~c~~~i~Ygd~~~~~G~~~~D~v 61 (273)
T cd05475 2 YYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCT---GC-----------------QCDYEIEYADGGSSMGVLVTDIF 61 (273)
T ss_pred ceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCC---CC-----------------cCccEeEeCCCCceEEEEEEEEE
Confidence 6999999999999999999999999999984 564 45 46899999975 58999999999
Q ss_pred EECc----eeecccEEEEEEecCCcc-ccccccceeecCCcccccCCCCCchHHHHHhcCCCCCCeEEEEecCCCCCCCC
Q 011141 167 KIGD----LVVKDQEFIEATREPSLT-FLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEG 241 (492)
Q Consensus 167 ~~g~----~~v~~~~fg~~~~~~~~~-~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~l~~~~~~~~~ 241 (492)
+++. ..++++.|||+....+.. +.....+||||||+...+ ++++|.+++.| +++||+||.+.. +
T Consensus 62 ~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s------~~~ql~~~~~i-~~~Fs~~l~~~~----~ 130 (273)
T cd05475 62 SLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKIS------LPSQLASQGII-KNVIGHCLSSNG----G 130 (273)
T ss_pred EEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCC------HHHHHHhcCCc-CceEEEEccCCC----C
Confidence 9953 577899999998654321 234578999999997654 78999999999 899999998632 6
Q ss_pred cEEEeCcccCCCCcccceEEeccCc---cceEEEeceEEEcCccccccCCCceEEEcCCCCceeccHH
Q 011141 242 GEIVFGGMDPDHYKGEHTYVPVTQK---GYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTT 306 (492)
Q Consensus 242 G~L~fGgiD~~~~~g~l~~~p~~~~---~~w~v~l~~i~vg~~~~~~~~~~~~aiiDTGtt~i~lP~~ 306 (492)
|.|+|| |..++.|++.|+|+... .+|.|++.+|+||++.. ......++|||||+++++|.+
T Consensus 131 g~l~~G--~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~--~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 131 GFLFFG--DDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPT--GGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred eEEEEC--CCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEEC--cCCCceEEEECCCceEEcCCc
Confidence 899998 56677899999999764 79999999999999854 345678999999999999964
No 22
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=1.4e-37 Score=305.84 Aligned_cols=178 Identities=28% Similarity=0.478 Sum_probs=152.9
Q ss_pred eEEEEEEecCCCceEEEEEeCCCCCeeeeCCCCCCCccccCCCCCCCCCCCceeeCCceEEEEecCCe-eEeeEEEeEEE
Q 011141 89 QYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA-ISGFFSEDHVK 167 (492)
Q Consensus 89 ~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs-~~G~~~~D~v~ 167 (492)
+|+++|+||||+|++.|+|||||+++||+| |.|.+.|++|+ ++|.+++|+|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~---------------------------~~~~~~Y~dg~~~~G~~~~D~v~ 53 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC---------------------------CSYEYSYGDGSSTSGVLATETFT 53 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC---------------------------CceEeEeCCCceeeeeEEEEEEE
Confidence 599999999999999999999999999975 46789999775 89999999999
Q ss_pred ECce--eecccEEEEEEecCCccccccccceeecCCcccccCCCCCchHHHHHhcCCCCCCeEEEEecCCCCCCCCcEEE
Q 011141 168 IGDL--VVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIV 245 (492)
Q Consensus 168 ~g~~--~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FSl~l~~~~~~~~~G~L~ 245 (492)
|++. .++++.||++....+ +....++||||||++..+ ++.+|..++ ++||+||.+..+....|+|+
T Consensus 54 ~g~~~~~~~~~~Fg~~~~~~~--~~~~~~~GIlGLg~~~~s------~~~ql~~~~----~~Fs~~l~~~~~~~~~G~l~ 121 (265)
T cd05476 54 FGDSSVSVPNVAFGCGTDNEG--GSFGGADGILGLGRGPLS------LVSQLGSTG----NKFSYCLVPHDDTGGSSPLI 121 (265)
T ss_pred ecCCCCccCCEEEEecccccC--CccCCCCEEEECCCCccc------HHHHhhccc----CeeEEEccCCCCCCCCCeEE
Confidence 9998 899999999997764 456678999999987654 667787776 89999998753233489999
Q ss_pred eCcccCCCCcccceEEeccC----ccceEEEeceEEEcCccccc--------cCCCceEEEcCCCCceeccHH
Q 011141 246 FGGMDPDHYKGEHTYVPVTQ----KGYWQFDMGDVMIDGQTTGF--------CAGGCAAIADSGTSLLAGPTT 306 (492)
Q Consensus 246 fGgiD~~~~~g~l~~~p~~~----~~~w~v~l~~i~vg~~~~~~--------~~~~~~aiiDTGtt~i~lP~~ 306 (492)
|||+|++ +.|++.|+|+.. .++|.+.+++|+|+++.+.+ ......++|||||+++++|++
T Consensus 122 fGg~d~~-~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~ 193 (265)
T cd05476 122 LGDAADL-GGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDP 193 (265)
T ss_pred ECCcccc-cCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCcc
Confidence 9999999 999999999976 57999999999999987642 235678999999999999843
No 23
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=2.5e-35 Score=301.30 Aligned_cols=293 Identities=15% Similarity=0.209 Sum_probs=209.0
Q ss_pred ecCCCce-EEEEEeCCCCCeeeeCCCCCC---------CccccCCCCCCCCC------CCceeeCCceEEEE-ecCCe-e
Q 011141 96 IGTPPQN-FTVIFDTGSSNLWVPSSKCYF---------SIACYFHSKYRSGR------SSTYKKNGKSADIH-YGTGA-I 157 (492)
Q Consensus 96 iGtP~Q~-~~v~lDTGSs~~WV~~~~C~~---------~~~C~~~~~y~~~~------SsT~~~~~~~~~i~-Yg~gs-~ 157 (492)
+|+|-.+ +.|++||||+++||+|.+|.. ...|..+..|++.+ ++......|.|... |++|+ .
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y~~~~y~~gs~t 81 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAGHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPVTGECA 81 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCCCcCCCCccCcCChhhccccccCCCccccCCCCCCCCCCcCeeEccccccCcEe
Confidence 5777777 999999999999997764321 45676666676542 22233344777655 77885 7
Q ss_pred EeeEEEeEEEECc--------eeecccEEEEEEecCCccccccccceeecCCcccccCCCCCchHHHHHhcCCCCCCeEE
Q 011141 158 SGFFSEDHVKIGD--------LVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFS 229 (492)
Q Consensus 158 ~G~~~~D~v~~g~--------~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FS 229 (492)
.|.+++|+|+|+. ..++++.|||+.......+ ...+|||||||+..++ +..+|..++. .+++||
T Consensus 82 ~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~-~~~~dGIlGLg~~~lS------l~sql~~~~~-~~~~FS 153 (362)
T cd05489 82 TGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGL-PPGAQGVAGLGRSPLS------LPAQLASAFG-VARKFA 153 (362)
T ss_pred eEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCC-ccccccccccCCCccc------hHHHhhhhcC-CCcceE
Confidence 8999999999973 3788999999986532222 2348999999999887 4556766655 479999
Q ss_pred EEecCCCCCCCCcEEEeCcccCCCCc------ccceEEeccCc----cceEEEeceEEEcCcccccc--------CCCce
Q 011141 230 FWFNRNADEEEGGEIVFGGMDPDHYK------GEHTYVPVTQK----GYWQFDMGDVMIDGQTTGFC--------AGGCA 291 (492)
Q Consensus 230 l~l~~~~~~~~~G~L~fGgiD~~~~~------g~l~~~p~~~~----~~w~v~l~~i~vg~~~~~~~--------~~~~~ 291 (492)
+||.+.. ...|.|+||+.++.++. +++.|+|+... .+|.|++++|+||++.+.++ .....
T Consensus 154 ~CL~~~~--~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~g 231 (362)
T cd05489 154 LCLPSSP--GGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPGG 231 (362)
T ss_pred EEeCCCC--CCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCCc
Confidence 9998753 23799999999988774 78999999754 79999999999999877542 23457
Q ss_pred EEEcCCCCceeccHHHHHHHHHHhCCccccccccchhhcchhHHHHHHhhcccCcccccccccccccCCCCccccccccc
Q 011141 292 AIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESV 371 (492)
Q Consensus 292 aiiDTGtt~i~lP~~~~~~l~~~i~~~~~~~~~C~~~~~~y~~~~~~~~~~~~~~~~~c~~~~~C~~~~~~~~~~~~~~~ 371 (492)
++|||||++++||.++|++|.+++.+.-. .+ ....+..
T Consensus 232 ~iiDSGTs~t~lp~~~y~~l~~a~~~~~~----------~~---------~~~~~~~----------------------- 269 (362)
T cd05489 232 VKLSTVVPYTVLRSDIYRAFTQAFAKATA----------RI---------PRVPAAA----------------------- 269 (362)
T ss_pred EEEecCCceEEECHHHHHHHHHHHHHHhc----------cc---------CcCCCCC-----------------------
Confidence 99999999999999999999999865400 00 0000000
Q ss_pred ccccCCCCCCCCCcccCchhHHHHHHHHHHHhhhchHHHHHHHHHhhcccCCCCCCceeeeCccCCCCCcEEEEECC--E
Q 011141 372 VPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGG--K 449 (492)
Q Consensus 372 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~p~~~f~~~~--~ 449 (492)
.+.+.|.... +...|+....+|+|+|+|+| +
T Consensus 270 ------------------------------------------~~~~~C~~~~-----~~~~~~~~~~~P~it~~f~g~g~ 302 (362)
T cd05489 270 ------------------------------------------VFPELCYPAS-----ALGNTRLGYAVPAIDLVLDGGGV 302 (362)
T ss_pred ------------------------------------------CCcCccccCC-----CcCCcccccccceEEEEEeCCCe
Confidence 0001222211 11234434689999999975 9
Q ss_pred EEeeCcCcceEEeCcCCcceeeeceeecccCCCCCCeEEEcCC
Q 011141 450 IFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWYVYSC 492 (492)
Q Consensus 450 ~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilg~~ 492 (492)
.+.|+|++|++++.++ ..|+ +|...+.. .++.|||||+
T Consensus 303 ~~~l~~~ny~~~~~~~--~~Cl-~f~~~~~~--~~~~~IlG~~ 340 (362)
T cd05489 303 NWTIFGANSMVQVKGG--VACL-AFVDGGSE--PRPAVVIGGH 340 (362)
T ss_pred EEEEcCCceEEEcCCC--cEEE-EEeeCCCC--CCceEEEeeh
Confidence 9999999999987643 5796 78766532 2568999985
No 24
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.89 E-value=1.9e-22 Score=170.95 Aligned_cols=108 Identities=61% Similarity=0.925 Sum_probs=95.7
Q ss_pred EEEEecCCCceEEEEEeCCCCCeeeeCCCCCCCccccCCCCC-CCCCCCceeeCCceEEEEecCCeeEeeEEEeEEEECc
Q 011141 92 GEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKY-RSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGD 170 (492)
Q Consensus 92 ~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y-~~~~SsT~~~~~~~~~i~Yg~gs~~G~~~~D~v~~g~ 170 (492)
++|.||||||++.|+|||||+++||++..|. ...|..+..| +++.|++++...+.|.+.|++|++.|.++.|+|+|++
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~-~~~~~~~~~~~~~~~sst~~~~~~~~~~~Y~~g~~~g~~~~D~v~ig~ 79 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQ-SLAIYSHSSYDDPSASSTYSDNGCTFSITYGTGSLSGGLSTDTVSIGD 79 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCC-CcccccccccCCcCCCCCCCCCCcEEEEEeCCCeEEEEEEEEEEEECC
Confidence 4799999999999999999999999999986 3344455666 9999999999999999999999999999999999999
Q ss_pred eeecccEEEEEEecCCccccccccceeecC
Q 011141 171 LVVKDQEFIEATREPSLTFLLAKFDGILGL 200 (492)
Q Consensus 171 ~~v~~~~fg~~~~~~~~~~~~~~~dGIlGL 200 (492)
..++++.||++....+..+.....+|||||
T Consensus 80 ~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 80 IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEECCEEEEEEEecCCccccccccccccCC
Confidence 999999999999887654455678999998
No 25
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.86 E-value=1e-20 Score=172.28 Aligned_cols=136 Identities=33% Similarity=0.556 Sum_probs=106.4
Q ss_pred EEEEEEecCCCceEEEEEeCCCCCeeeeCCCCCCCccccCCCCCCCCCCCceeeC----------------------Cce
Q 011141 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKN----------------------GKS 147 (492)
Q Consensus 90 Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~----------------------~~~ 147 (492)
|+++|.||||+|++.|++||||+.+|++| ..+.|+|.+|+||+.. .|.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C----------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~ 70 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC----------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCP 70 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC----------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCccc
Confidence 89999999999999999999999999987 2467888888888762 258
Q ss_pred EEEEecCCe-eEeeEEEeEEEECc-----eeecccEEEEEEecCCccccccccceeecCCcccccCCCCCchHHHHHhcC
Q 011141 148 ADIHYGTGA-ISGFFSEDHVKIGD-----LVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQG 221 (492)
Q Consensus 148 ~~i~Yg~gs-~~G~~~~D~v~~g~-----~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg 221 (492)
|.+.|++++ +.|.+++|+++++. ..+.++.|||+....+. ....+||||||+...+ ++.||.++
T Consensus 71 y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~---~~~~~GilGLg~~~~S------l~sQl~~~- 140 (164)
T PF14543_consen 71 YSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGL---FYGADGILGLGRGPLS------LPSQLASS- 140 (164)
T ss_dssp EEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTS---STTEEEEEE-SSSTTS------HHHHHHHH-
T ss_pred ceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccC---CcCCCcccccCCCccc------HHHHHHHh-
Confidence 999999987 68999999999976 46788999999987653 2278999999998877 88888888
Q ss_pred CCCCCeEEEEecCCCCCCCCcEEEeCc
Q 011141 222 LVNEPVFSFWFNRNADEEEGGEIVFGG 248 (492)
Q Consensus 222 ~I~~~~FSl~l~~~~~~~~~G~L~fGg 248 (492)
..++||+||.+ .+....|.|+||+
T Consensus 141 --~~~~FSyCL~~-~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 141 --SGNKFSYCLPS-SSPSSSGFLSFGD 164 (164)
T ss_dssp ----SEEEEEB-S--SSSSEEEEEECS
T ss_pred --cCCeEEEECCC-CCCCCCEEEEeCc
Confidence 57999999998 2233489999995
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.10 E-value=3.9e-10 Score=102.42 Aligned_cols=51 Identities=18% Similarity=0.334 Sum_probs=41.6
Q ss_pred ceEEEeceEEEcCccccccCC-------CceEEEcCCCCceeccHHHHHHHHHHhCCc
Q 011141 268 YWQFDMGDVMIDGQTTGFCAG-------GCAAIADSGTSLLAGPTTIITQVNHAIGAT 318 (492)
Q Consensus 268 ~w~v~l~~i~vg~~~~~~~~~-------~~~aiiDTGtt~i~lP~~~~~~l~~~i~~~ 318 (492)
+|.|++.+|+||++.+.++.. ...++|||||++++||+++|++|.+++...
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~ 58 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQ 58 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHH
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHH
Confidence 478999999999998876543 467999999999999999999999998654
No 27
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=98.51 E-value=7e-08 Score=65.60 Aligned_cols=39 Identities=31% Similarity=0.659 Sum_probs=37.1
Q ss_pred cccCchhHHHHHHHHHHHhhhchHHHHHHHHHhhcccCC
Q 011141 385 DAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLP 423 (492)
Q Consensus 385 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 423 (492)
|..|.+|++++.++++.|.+|.|+++|.++++++|+++|
T Consensus 1 ~~~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~~lP 39 (39)
T PF05184_consen 1 GDECDICKFVVKEIEKLLKNNKTEEEIKKALEKACNKLP 39 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTCHHHHHHHHHHHHHTTSC
T ss_pred CCcchHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhhCc
Confidence 457999999999999999999999999999999999887
No 28
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.03 E-value=1.7e-05 Score=64.72 Aligned_cols=92 Identities=17% Similarity=0.311 Sum_probs=65.7
Q ss_pred eEEEEEEecCCCceEEEEEeCCCCCeeeeCCCCCCCccccCCCCCCCCCCCceeeCCceEEEEecCCee-EeeEEEeEEE
Q 011141 89 QYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAI-SGFFSEDHVK 167 (492)
Q Consensus 89 ~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~-~G~~~~D~v~ 167 (492)
.|++++.|+ ++++++++|||++.+|+...... .+. . . ........+...+|.. ......+.++
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~---~l~---~--~------~~~~~~~~~~~~~G~~~~~~~~~~~i~ 65 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAE---RLG---L--P------LTLGGKVTVQTANGRVRAARVRLDSLQ 65 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH---HcC---C--C------ccCCCcEEEEecCCCccceEEEcceEE
Confidence 589999999 69999999999999999764321 111 0 0 1123345567777773 4556689999
Q ss_pred ECceeecccEEEEEEecCCccccccccceeecCCc
Q 011141 168 IGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 202 (492)
Q Consensus 168 ~g~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~ 202 (492)
+|+..++++.+........ ..+||||+.+
T Consensus 66 ig~~~~~~~~~~v~d~~~~------~~~gIlG~d~ 94 (96)
T cd05483 66 IGGITLRNVPAVVLPGDAL------GVDGLLGMDF 94 (96)
T ss_pred ECCcEEeccEEEEeCCccc------CCceEeChHH
Confidence 9999999888887764321 4699999863
No 29
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.38 E-value=0.0012 Score=56.84 Aligned_cols=101 Identities=22% Similarity=0.355 Sum_probs=67.0
Q ss_pred EeceecCCceEEEEEEecCCCceEEEEEeCCCCCeeeeCCCCCCCccccCCCCCCCCCCCceeeCCceEEEEecCCeeE-
Q 011141 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAIS- 158 (492)
Q Consensus 80 ~~l~~~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~~- 158 (492)
+++.-..+..|++++.|. ++++.+++|||++.+-++...-. .-..++.. ......+.=+.|...
T Consensus 2 ~~i~~~~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~-------~Lgl~~~~------~~~~~~~~ta~G~~~~ 66 (121)
T TIGR02281 2 VQLAKDGDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQ-------RLGLDLNR------LGYTVTVSTANGQIKA 66 (121)
T ss_pred EEEEEcCCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH-------HcCCCccc------CCceEEEEeCCCcEEE
Confidence 456666688999999997 58999999999999877542210 00111111 122333444556643
Q ss_pred eeEEEeEEEECceeecccEEEEEEecCCccccccccceeecCCc
Q 011141 159 GFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 202 (492)
Q Consensus 159 G~~~~D~v~~g~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~ 202 (492)
..+.-|.+.+|+..++|..+.++.... ..+|+||+.+
T Consensus 67 ~~~~l~~l~iG~~~~~nv~~~v~~~~~-------~~~~LLGm~f 103 (121)
T TIGR02281 67 ARVTLDRVAIGGIVVNDVDAMVAEGGA-------LSESLLGMSF 103 (121)
T ss_pred EEEEeCEEEECCEEEeCcEEEEeCCCc-------CCceEcCHHH
Confidence 446889999999999999977664221 1279999974
No 30
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.65 E-value=0.012 Score=47.08 Aligned_cols=88 Identities=19% Similarity=0.244 Sum_probs=53.2
Q ss_pred EEEEecCCCceEEEEEeCCCCCeeeeCCCCCCCccccCCCCCCCCCCCceeeCCceEEEEecCCe-eEeeEEEeEEEECc
Q 011141 92 GEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA-ISGFFSEDHVKIGD 170 (492)
Q Consensus 92 ~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs-~~G~~~~D~v~~g~ 170 (492)
+++.|+ ++++++++|||++.+.+...... ..+ ..+... .....+.-.+|. .......+.+++|+
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~------~l~-~~~~~~------~~~~~~~~~~g~~~~~~~~~~~i~ig~ 65 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAK------KLG-LKPRPK------SVPISVSGAGGSVTVYRGRVDSITIGG 65 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHH------HcC-CCCcCC------ceeEEEEeCCCCEEEEEEEEEEEEECC
Confidence 357777 58999999999998877543321 000 111100 112333334444 33445666899999
Q ss_pred eeecccEEEEEEecCCccccccccceeecCC
Q 011141 171 LVVKDQEFIEATREPSLTFLLAKFDGILGLG 201 (492)
Q Consensus 171 ~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg 201 (492)
..+.+..|-... .....+||||+-
T Consensus 66 ~~~~~~~~~v~~-------~~~~~~~iLG~d 89 (90)
T PF13650_consen 66 ITLKNVPFLVVD-------LGDPIDGILGMD 89 (90)
T ss_pred EEEEeEEEEEEC-------CCCCCEEEeCCc
Confidence 988888776665 123568999974
No 31
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=95.81 E-value=0.11 Score=52.30 Aligned_cols=197 Identities=20% Similarity=0.235 Sum_probs=102.9
Q ss_pred EEEEEEecCCC----ceE-EEEEeCCCCCeeeeCCCCCCCccccCCCCCCCCCCCceeeCCceEEEEecCCeeEeeEEEe
Q 011141 90 YFGEIGIGTPP----QNF-TVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSED 164 (492)
Q Consensus 90 Y~~~i~iGtP~----Q~~-~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~~G~~~~D 164 (492)
-++.|+|=.|+ |++ +|++||||.-+=|..+.-.. .-........+..-.-.+ -..|++|..=|.+.+.
T Consensus 24 p~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~sAl~~----~l~~~Lp~~t~~g~~laE---C~~F~sgytWGsVr~A 96 (370)
T PF11925_consen 24 PTVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFASALPS----SLAGSLPQQTGGGAPLAE---CAQFASGYTWGSVRTA 96 (370)
T ss_pred eeeEEEEeCCCCCCceeeCcEEEeccchhhhHHHhhhch----hhhccCCcccCCCcchhh---hhhccCcccccceEEE
Confidence 34556664443 666 49999999977665543210 000011111111001011 1467788777999999
Q ss_pred EEEECceeecccEEEEEEecC-----------C---ccccccccceeecCCcccccC----------------CCC---C
Q 011141 165 HVKIGDLVVKDQEFIEATREP-----------S---LTFLLAKFDGILGLGFQEISV----------------GKA---V 211 (492)
Q Consensus 165 ~v~~g~~~v~~~~fg~~~~~~-----------~---~~~~~~~~dGIlGLg~~~~s~----------------~~~---~ 211 (492)
+|+||+....++.+.+..+.. + .......++||||+|.-.... ... +
T Consensus 97 dV~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~~DcG~~C~~sa~~~~YY~C~~~~sCt 176 (370)
T PF11925_consen 97 DVTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFPYDCGAACAQSALPGNYYSCPSGGSCT 176 (370)
T ss_pred EEEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCccccCchhhcccCCCceEECCCCCCee
Confidence 999999776666666654321 0 011234679999999753321 000 0
Q ss_pred chHHHHHhcCCCCCCeEEEEecCC---------C---CCCCCcEEEeC-cccCCC-CcccceEEeccCccceEEEeceEE
Q 011141 212 PVWYNMVNQGLVNEPVFSFWFNRN---------A---DEEEGGEIVFG-GMDPDH-YKGEHTYVPVTQKGYWQFDMGDVM 277 (492)
Q Consensus 212 ~~~~~L~~qg~I~~~~FSl~l~~~---------~---~~~~~G~L~fG-giD~~~-~~g~l~~~p~~~~~~w~v~l~~i~ 277 (492)
+.--.+-+| +..|+..|-...+ + .....|.|+|| |.-... ..+.....+....++... .
T Consensus 177 ~t~v~~~~Q--V~NPV~~Fa~DNNGvii~lP~v~~~Ga~SatG~LiFGIgTQsNN~l~~~~~~~~~~~~G~~tt-----~ 249 (370)
T PF11925_consen 177 STTVPLAQQ--VANPVARFATDNNGVIIQLPAVSASGAASATGTLIFGIGTQSNNALPSGATVLTTDSNGDFTT-----T 249 (370)
T ss_pred cccchhhhc--ccCcccccCccCCeEEEecCCCCCCCCccceEEEEEecCCcccCcccccceEEeecCCceEEE-----E
Confidence 111112223 5567666533222 1 22357999998 222211 223244555555555332 2
Q ss_pred EcCccccccCCCceEEEcCCCCceeccHH
Q 011141 278 IDGQTTGFCAGGCAAIADSGTSLLAGPTT 306 (492)
Q Consensus 278 vg~~~~~~~~~~~~aiiDTGtt~i~lP~~ 306 (492)
++|.... ...||||+.-.++|..
T Consensus 250 ~~G~t~~------~sf~DSGSNg~fF~d~ 272 (370)
T PF11925_consen 250 FNGQTYS------ASFFDSGSNGYFFPDS 272 (370)
T ss_pred ecCceee------eeeEecCCceeeccCC
Confidence 3443321 2499999999888744
No 32
>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....
Probab=95.52 E-value=0.0038 Score=41.06 Aligned_cols=34 Identities=53% Similarity=1.078 Sum_probs=32.2
Q ss_pred cccchhhcchhHHHHHHhhcccCccccccccccc
Q 011141 323 QECKAVVSQYGEEIINMLLAKDEPQKICSQIGLC 356 (492)
Q Consensus 323 ~~C~~~~~~y~~~~~~~~~~~~~~~~~c~~~~~C 356 (492)
..|+.++..|++.+++.+....+|+.+|...++|
T Consensus 2 ~~C~~~V~~y~~~ii~~l~~~~~p~~iC~~i~~C 35 (35)
T PF03489_consen 2 DECKNFVDQYGPQIIQLLEKQLDPQQICTKIGLC 35 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTHHHHHHHTTSS
T ss_pred cHHHHHHHHHHHHHHHHHHhcCChHHHHHHcCCC
Confidence 4699999999999999999999999999999998
No 33
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.31 E-value=0.11 Score=44.85 Aligned_cols=91 Identities=21% Similarity=0.272 Sum_probs=57.7
Q ss_pred CceEEEEEEecCCCceEEEEEeCCCCCeeeeCCCCCCCccccCCCCCCCCCCCceeeCCceEE-EEecCCe--eEeeEEE
Q 011141 87 DAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD-IHYGTGA--ISGFFSE 163 (492)
Q Consensus 87 ~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~-i~Yg~gs--~~G~~~~ 163 (492)
...+++++.|+ ++++.+++|||++..++....+. .+.-.. .. ...+. ...+.|. ..|....
T Consensus 14 ~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~a~---~lgl~~----~~-------~~~~~~~~~g~g~~~~~g~~~~ 77 (124)
T cd05479 14 VPMLYINVEIN--GVPVKAFVDSGAQMTIMSKACAE---KCGLMR----LI-------DKRFQGIAKGVGTQKILGRIHL 77 (124)
T ss_pred eeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHHHH---HcCCcc----cc-------CcceEEEEecCCCcEEEeEEEE
Confidence 45789999998 58999999999999988543221 111100 00 11111 2233232 4677778
Q ss_pred eEEEECceeecccEEEEEEecCCccccccccceeecCCc
Q 011141 164 DHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 202 (492)
Q Consensus 164 D~v~~g~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~ 202 (492)
+.+.+++...+ ..|.+... ...|+|||+-+
T Consensus 78 ~~l~i~~~~~~-~~~~Vl~~--------~~~d~ILG~d~ 107 (124)
T cd05479 78 AQVKIGNLFLP-CSFTVLED--------DDVDFLIGLDM 107 (124)
T ss_pred EEEEECCEEee-eEEEEECC--------CCcCEEecHHH
Confidence 89999998865 66655532 24689999964
No 34
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=95.20 E-value=0.023 Score=43.69 Aligned_cols=38 Identities=37% Similarity=0.748 Sum_probs=36.4
Q ss_pred cCchhHHHHHHHHHHHhhhchHHHHHHHHHhhcccCCC
Q 011141 387 MCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPS 424 (492)
Q Consensus 387 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 424 (492)
.|.+|+.++..+++.+.++.+++.+.++++++|+.+|.
T Consensus 2 ~C~~C~~~v~~~~~~~~~~~~~~~i~~~~~~~C~~~~~ 39 (76)
T smart00741 2 LCELCEDVVKQLENLLKDNKTEEEIKKALEKVCKKLPK 39 (76)
T ss_pred cChHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcCH
Confidence 69999999999999999999999999999999999993
No 35
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=95.10 E-value=0.26 Score=45.70 Aligned_cols=91 Identities=15% Similarity=0.197 Sum_probs=68.0
Q ss_pred CcceEeceecCCceEEEEEEecCCCceEEEEEeCCCCCeeeeCCCCCCCccccCCCCCCCCCCCceeeCCceEEEEecCC
Q 011141 76 DADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTG 155 (492)
Q Consensus 76 ~~~~~~l~~~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g 155 (492)
+...+.|....++.|.++..|. +|.+.+++|||-+.+-+....-. .-.++.+. .+.++.+.-.+|
T Consensus 92 g~~~v~Lak~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~-------RlGid~~~------l~y~~~v~TANG 156 (215)
T COG3577 92 GYQEVSLAKSRDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDAR-------RLGIDLNS------LDYTITVSTANG 156 (215)
T ss_pred CceEEEEEecCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHH-------HhCCCccc------cCCceEEEccCC
Confidence 4557888888899999999998 69999999999999888654321 12344322 245666777888
Q ss_pred eeE-eeEEEeEEEECceeecccEEEEE
Q 011141 156 AIS-GFFSEDHVKIGDLVVKDQEFIEA 181 (492)
Q Consensus 156 s~~-G~~~~D~v~~g~~~v~~~~fg~~ 181 (492)
... ..+-.|.|.||+..+.|+.--++
T Consensus 157 ~~~AA~V~Ld~v~IG~I~~~nV~A~V~ 183 (215)
T COG3577 157 RARAAPVTLDRVQIGGIRVKNVDAMVA 183 (215)
T ss_pred ccccceEEeeeEEEccEEEcCchhhee
Confidence 864 56889999999999988774444
No 36
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=94.23 E-value=0.22 Score=40.16 Aligned_cols=75 Identities=13% Similarity=0.054 Sum_probs=47.1
Q ss_pred EEEEEEecCCCceEEEEEeCCCCCeeeeCCCCCCCccccCCCCCCCCCCCceeeCCceEEEEecCCe---eEeeEEEeEE
Q 011141 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA---ISGFFSEDHV 166 (492)
Q Consensus 90 Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs---~~G~~~~D~v 166 (492)
|++++.|+ ++++.+++||||+..++....+. ....+.. ......+.=.+|. +.|.+ .+.+
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~~~--------~lg~~~~------~~~~~~v~~a~G~~~~~~G~~-~~~v 63 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKTWR--------KLGSPPL------KPTKKRLRTATGTKLSVLGQI-LVTV 63 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHHHH--------HhCCCcc------ccccEEEEecCCCEeeEeEEE-EEEE
Confidence 57889998 59999999999999999765432 0111101 1223333334443 35766 8899
Q ss_pred EECceeecccEEEEEE
Q 011141 167 KIGDLVVKDQEFIEAT 182 (492)
Q Consensus 167 ~~g~~~v~~~~fg~~~ 182 (492)
++++.+. ...|-+..
T Consensus 64 ~~~~~~~-~~~~~v~~ 78 (91)
T cd05484 64 KYGGKTK-VLTLYVVK 78 (91)
T ss_pred EECCEEE-EEEEEEEE
Confidence 9999774 35554444
No 37
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=93.59 E-value=0.083 Score=49.83 Aligned_cols=88 Identities=24% Similarity=0.504 Sum_probs=69.5
Q ss_pred ccchhhcchhHHHHHHhhcccCcccccccccccccCCCCcccccccccccccCCCCCCCCCcccCchhHHHHHHHHHHHh
Q 011141 324 ECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLK 403 (492)
Q Consensus 324 ~C~~~~~~y~~~~~~~~~~~~~~~~~c~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~ 403 (492)
+|..++..|++.+++.+.....|+.+|...++|.-...+... +. ++..++..|.+|..++.+++..|.
T Consensus 78 ~C~~fv~~y~~~ii~~l~~~~~P~~vC~~l~lC~~~~~~~~~-----~~-------~~~~~~~~C~~C~~~V~~~~~~l~ 145 (218)
T KOG1340|consen 78 ECLSFVDSYLDPIIKELESGTAPEDVCKKLNLCSASAGPVSE-----VF-------ASQPAAGECELCRETVTEADTKLQ 145 (218)
T ss_pred HHHHHHHHhhhHHHHHHHhccCHHHHHHHhccCCcccchhhh-----hh-------hhcccccccHHHHHHHHHHHHhcc
Confidence 899999999999999999999999999999999962211100 00 112338899999999999999998
Q ss_pred h-hchHHHHHHHHHhhcccCC
Q 011141 404 Q-NQTQERILNYVNELCDRLP 423 (492)
Q Consensus 404 ~-~~~~~~~~~~~~~~c~~~~ 423 (492)
. +-++.++-.-..+.|+.++
T Consensus 146 d~~~~k~~~~~~~~~~ck~l~ 166 (218)
T KOG1340|consen 146 DKPKTKGKIVSLLLKSCKSLP 166 (218)
T ss_pred cchhHHHHHHHHHHhhccCCc
Confidence 7 7777777777788886555
No 38
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=92.35 E-value=0.74 Score=36.75 Aligned_cols=81 Identities=19% Similarity=0.161 Sum_probs=47.1
Q ss_pred EEEecCCCceEEEEEeCCCCCeeeeCCCCCCCccccCCCCCCCCCCCceeeCCceEEEEecCCeeEeeE-EEe-EEEECc
Q 011141 93 EIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFF-SED-HVKIGD 170 (492)
Q Consensus 93 ~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~~G~~-~~D-~v~~g~ 170 (492)
.+.|. ++++++++|||++.+-+...... .... ..+...+.=..|...-.+ ..+ .+.+|+
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~a~--------~~~~---------~~~~~~v~gagG~~~~~v~~~~~~v~vg~ 62 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDLGP--------KQEL---------STTSVLIRGVSGQSQQPVTTYRTLVDLGG 62 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHHhh--------hccC---------CCCcEEEEeCCCcccccEEEeeeEEEECC
Confidence 35565 69999999999999998765442 0010 122333333333321112 123 699999
Q ss_pred eeecccEEEEEEecCCccccccccceeecCCc
Q 011141 171 LVVKDQEFIEATREPSLTFLLAKFDGILGLGF 202 (492)
Q Consensus 171 ~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~ 202 (492)
..+.+ .|...... .++|||+.+
T Consensus 63 ~~~~~-~~~v~~~~---------~~~lLG~df 84 (86)
T cd06095 63 HTVSH-SFLVVPNC---------PDPLLGRDL 84 (86)
T ss_pred EEEEE-EEEEEcCC---------CCcEechhh
Confidence 98885 45444321 278999854
No 39
>PF07966 A1_Propeptide: A1 Propeptide ; InterPro: IPR012848 Most eukaryotic endopeptidases (MEROPS peptidase family A1) are synthesised with signal and propeptides. The animal pepsin-like endopeptidase propeptides form a distinct family of propeptides, which contain a conserved motif approximately 30 residues long. In pepsinogen A, the first 11 residues of the mature pepsin sequence are displaced by residues of the propeptide. The propeptide contains two helices that block the active site cleft, in particular the conserved Asp11 residue, in pepsin, hydrogen bonds to a conserved Arg residue in the propeptide. This hydrogen bond stabilises the propeptide conformation and is probably responsible for triggering the conversion of pepsinogen to pepsin under acidic conditions [, ]. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1AVF_Q 1HTR_P 3PSG_A 2PSG_A 3VCM_Q 1TZS_P.
Probab=87.74 E-value=0.25 Score=30.95 Aligned_cols=25 Identities=28% Similarity=0.008 Sum_probs=17.7
Q ss_pred eEEEeccccCcchhhhhhhcccccc
Q 011141 30 LYRIGLKKRKFDLNNRVAARLDSKE 54 (492)
Q Consensus 30 ~~~ipL~~~~~~~~~~~~~~~~~~~ 54 (492)
++||||+|.++.|+.+.+.+...++
T Consensus 1 l~rIPL~K~kS~R~~L~e~g~~~~f 25 (29)
T PF07966_consen 1 LVRIPLKKFKSMRETLREKGTLEEF 25 (29)
T ss_dssp -EEEEEEE---HHHHHHHTT-HHHH
T ss_pred CEEEeccCCchHHHHHHHcCchHHH
Confidence 4799999999999999998887765
No 40
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=82.75 E-value=2.2 Score=32.77 Aligned_cols=33 Identities=18% Similarity=0.372 Sum_probs=28.5
Q ss_pred CceEEEEEEecCCCceEEEEEeCCCCCeeeeCCCC
Q 011141 87 DAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC 121 (492)
Q Consensus 87 ~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C 121 (492)
...+++++.|| ++.+..++|||++...|+...+
T Consensus 6 ~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 6 PGLMYVPVSIG--GVQVKALVDTGATHNFISESLA 38 (72)
T ss_pred CCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHH
Confidence 56899999999 5999999999999998876544
No 41
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=80.43 E-value=1.7 Score=41.12 Aligned_cols=42 Identities=26% Similarity=0.591 Sum_probs=38.6
Q ss_pred CcccCchhHHHHHHHHHHHhhhchHHHHHHHHHhhcccCCCCCC
Q 011141 384 HDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMG 427 (492)
Q Consensus 384 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 427 (492)
+...|..|+.++..+|..+.+| ..+|++.|...|++++....
T Consensus 35 ~~~~C~lCe~~v~~i~~~~~~~--~~~i~~~l~~~Ckkl~~~~~ 76 (218)
T KOG1340|consen 35 SAEVCELCELVVKRIQEYLDKN--QNELKEDLHAECKKLPKAIP 76 (218)
T ss_pred ccchhHHHHHHHHHHHHhhccc--HHHHHHHHHHHHHHhcccch
Confidence 5678999999999999999999 99999999999999998764
No 42
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=79.46 E-value=3.6 Score=35.19 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=28.0
Q ss_pred CccceEEEeceEEEcCccccccCCCceEEEcCCCCceeccHHHHHHH
Q 011141 265 QKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (492)
Q Consensus 265 ~~~~w~v~l~~i~vg~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l 311 (492)
..+++.+. +.|||+.+ .++||||++.+.++.+..+++
T Consensus 8 ~~g~~~v~---~~InG~~~-------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 8 GDGHFYAT---GRVNGRNV-------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCCeEEEE---EEECCEEE-------EEEEECCCCcEEcCHHHHHHc
Confidence 34555554 46777644 499999999999999988776
No 43
>PF13650 Asp_protease_2: Aspartyl protease
Probab=78.54 E-value=2.3 Score=33.47 Aligned_cols=29 Identities=17% Similarity=0.387 Sum_probs=23.5
Q ss_pred EEEcCccccccCCCceEEEcCCCCceeccHHHHHHH
Q 011141 276 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (492)
Q Consensus 276 i~vg~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l 311 (492)
+.|||+.+ .+++|||++.+.++++.++++
T Consensus 3 v~vng~~~-------~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV-------RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE-------EEEEcCCCCcEEECHHHHHHc
Confidence 45666544 499999999999999988776
No 44
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=73.76 E-value=5 Score=32.60 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=23.6
Q ss_pred EEEEEecCCCceEEEEEeCCCCCeeeeCCCC
Q 011141 91 FGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC 121 (492)
Q Consensus 91 ~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C 121 (492)
+.+|.+. ++++.+++||||+.+-++...+
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGGS
T ss_pred eEEEeEC--CEEEEEEEecCCCcceeccccc
Confidence 5678888 5899999999999988876544
No 45
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=73.52 E-value=4.3 Score=31.14 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=24.1
Q ss_pred EEEcCccccccCCCceEEEcCCCCceeccHHHHHHH
Q 011141 276 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (492)
Q Consensus 276 i~vg~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l 311 (492)
+.+++..+ .+++|||++-.+++.+.++.+
T Consensus 13 ~~I~g~~~-------~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQV-------KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEE-------EEEEeCCCcceecCHHHHHHh
Confidence 45677554 399999999999999998887
No 46
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=72.07 E-value=4.6 Score=32.36 Aligned_cols=29 Identities=10% Similarity=0.276 Sum_probs=24.5
Q ss_pred EEEcCccccccCCCceEEEcCCCCceeccHHHHHHH
Q 011141 276 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (492)
Q Consensus 276 i~vg~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l 311 (492)
+.|||+.+. +++|||++...++.+.+..+
T Consensus 5 ~~Ing~~i~-------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 5 LLVNGKPLK-------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEECCEEEE-------EEEcCCcceEEeCHHHHHHh
Confidence 567777654 99999999999999988876
No 47
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=67.28 E-value=6.8 Score=31.07 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=23.0
Q ss_pred EEEcCccccccCCCceEEEcCCCCceeccHHHHHHH
Q 011141 276 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (492)
Q Consensus 276 i~vg~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l 311 (492)
+.+|++.+ .+++|||++.+.++.+..+.+
T Consensus 7 v~i~~~~~-------~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 7 VTINGQPV-------RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEECCEEE-------EEEEECCCCcEEcCHHHHHHc
Confidence 46676544 499999999999999877665
No 48
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=65.19 E-value=2.8 Score=31.75 Aligned_cols=37 Identities=43% Similarity=0.955 Sum_probs=33.3
Q ss_pred ccccccchhhcchhHHHHHHhhcccCccccccccccc
Q 011141 320 IVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLC 356 (492)
Q Consensus 320 ~~~~~C~~~~~~y~~~~~~~~~~~~~~~~~c~~~~~C 356 (492)
.+...|+.++.+|++.+++.+..+..|..+|...++|
T Consensus 40 ~~~~~C~~~v~~~~~~ii~~i~~~~~p~~iC~~l~~C 76 (76)
T smart00741 40 SLSDQCKEFVDQYGPEIIDLLEQGLDPKDVCQKLGLC 76 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCC
Confidence 4566799999999999999999998899999999887
No 49
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=65.02 E-value=6.7 Score=31.14 Aligned_cols=29 Identities=10% Similarity=0.226 Sum_probs=23.9
Q ss_pred EEEcCccccccCCCceEEEcCCCCceeccHHHHHHH
Q 011141 276 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (492)
Q Consensus 276 i~vg~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l 311 (492)
+.+||+.+ ..++|||.+.+.++.+..+.+
T Consensus 3 v~InG~~~-------~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPI-------VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEE-------EEEEECCCCeEEECHHHhhhc
Confidence 45677655 389999999999999998876
No 50
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=59.94 E-value=6.7 Score=32.07 Aligned_cols=12 Identities=25% Similarity=0.025 Sum_probs=5.1
Q ss_pred ccchHHHHHHHH
Q 011141 3 MVFKSITAGFFL 14 (492)
Q Consensus 3 M~~~~~~~~l~~ 14 (492)
|+++.++++.++
T Consensus 1 MaSK~~llL~l~ 12 (95)
T PF07172_consen 1 MASKAFLLLGLL 12 (95)
T ss_pred CchhHHHHHHHH
Confidence 554444443333
No 51
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=59.23 E-value=23 Score=30.47 Aligned_cols=79 Identities=20% Similarity=0.291 Sum_probs=44.7
Q ss_pred ceEEEEEEecCCCceEEEEEeCCCCCeeeeCCCCCCCccccCCCCCCCCCCCceeeCCceEEEEecCCe--eEeeEEEeE
Q 011141 88 AQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA--ISGFFSEDH 165 (492)
Q Consensus 88 ~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs--~~G~~~~D~ 165 (492)
...|++++|+ ++++++.+|||...+-+. ..|. ..|+-...-+. ..-...+|-|. +.|.+..-.
T Consensus 23 ~mLyI~~~in--g~~vkA~VDtGAQ~tims-~~~a--~r~gL~~lid~----------r~~g~a~GvG~~~i~G~Ih~~~ 87 (124)
T PF09668_consen 23 SMLYINCKIN--GVPVKAFVDTGAQSTIMS-KSCA--ERCGLMRLIDK----------RFAGVAKGVGTQKILGRIHSVQ 87 (124)
T ss_dssp ---EEEEEET--TEEEEEEEETT-SS-EEE-HHHH--HHTTGGGGEEG----------GG-EE-------EEEEEEEEEE
T ss_pred ceEEEEEEEC--CEEEEEEEeCCCCccccC-HHHH--HHcCChhhccc----------cccccccCCCcCceeEEEEEEE
Confidence 4689999999 599999999999887664 4452 45543222221 11122345554 679999999
Q ss_pred EEECceeecccEEEEEE
Q 011141 166 VKIGDLVVKDQEFIEAT 182 (492)
Q Consensus 166 v~~g~~~v~~~~fg~~~ 182 (492)
+.+|+..++ ..|-+..
T Consensus 88 l~ig~~~~~-~s~~Vle 103 (124)
T PF09668_consen 88 LKIGGLFFP-CSFTVLE 103 (124)
T ss_dssp EEETTEEEE-EEEEEET
T ss_pred EEECCEEEE-EEEEEeC
Confidence 999986665 4444443
No 52
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=58.58 E-value=10 Score=32.47 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=23.0
Q ss_pred EEEcCccccccCCCceEEEcCCCCceeccHHHHHHH
Q 011141 276 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (492)
Q Consensus 276 i~vg~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l 311 (492)
+.+||..+ .++||||++...++.+..+++
T Consensus 21 ~~Ing~~~-------~~LvDTGAs~s~Is~~~a~~l 49 (124)
T cd05479 21 VEINGVPV-------KAFVDSGAQMTIMSKACAEKC 49 (124)
T ss_pred EEECCEEE-------EEEEeCCCceEEeCHHHHHHc
Confidence 45666544 499999999999999987764
No 53
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=57.35 E-value=16 Score=29.35 Aligned_cols=27 Identities=19% Similarity=0.269 Sum_probs=21.9
Q ss_pred EEEecCCCceEEEEEeCCCCCeeeeCCCC
Q 011141 93 EIGIGTPPQNFTVIFDTGSSNLWVPSSKC 121 (492)
Q Consensus 93 ~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C 121 (492)
.+.|+ +|.+.+++|||+.++-+.....
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~~~ 28 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAENDW 28 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccccc
Confidence 35666 6999999999999999876544
No 54
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=49.87 E-value=1e+02 Score=26.80 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=24.4
Q ss_pred ceEEEEEEecCCCceEEEEEeCCCCCeeeeC
Q 011141 88 AQYFGEIGIGTPPQNFTVIFDTGSSNLWVPS 118 (492)
Q Consensus 88 ~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~ 118 (492)
..-.+.+.|.+ ++..+++|+|++..+|..
T Consensus 20 ~vi~g~~~I~~--~~~~vLiDSGAThsFIs~ 48 (135)
T PF08284_consen 20 DVITGTFLINS--IPASVLIDSGATHSFISS 48 (135)
T ss_pred CeEEEEEEecc--EEEEEEEecCCCcEEccH
Confidence 34678889986 999999999999988854
No 55
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=47.30 E-value=25 Score=31.74 Aligned_cols=29 Identities=21% Similarity=0.391 Sum_probs=22.8
Q ss_pred EEEEEecCCCceEEEEEeCCCCCeeeeCC
Q 011141 91 FGEIGIGTPPQNFTVIFDTGSSNLWVPSS 119 (492)
Q Consensus 91 ~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~ 119 (492)
+..+.++.-+.++.++|||||+..++...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 44555666679999999999999888654
No 56
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=44.64 E-value=21 Score=28.88 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=19.9
Q ss_pred ceEEEcCCCCceeccHHHHHHHH
Q 011141 290 CAAIADSGTSLLAGPTTIITQVN 312 (492)
Q Consensus 290 ~~aiiDTGtt~i~lP~~~~~~l~ 312 (492)
..+.+|||++...+|...+..+.
T Consensus 11 v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 11 VKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEEecCCEEEeccHHHHhhhc
Confidence 34899999999999999888774
No 57
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=43.91 E-value=15 Score=29.68 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=20.2
Q ss_pred EEEcCccccccCCCceEEEcCCCCceeccHHHH
Q 011141 276 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTII 308 (492)
Q Consensus 276 i~vg~~~~~~~~~~~~aiiDTGtt~i~lP~~~~ 308 (492)
+.+++..+ .++||||+..+.++.+.+
T Consensus 10 v~i~g~~i-------~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 10 VKINGKKI-------KALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEETTEEE-------EEEEETTBSSEEESSGGS
T ss_pred EeECCEEE-------EEEEecCCCcceeccccc
Confidence 45666654 499999999999997644
No 58
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=42.16 E-value=20 Score=29.80 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=19.0
Q ss_pred CceEEEcCCCCcee-ccHHHHHHH
Q 011141 289 GCAAIADSGTSLLA-GPTTIITQV 311 (492)
Q Consensus 289 ~~~aiiDTGtt~i~-lP~~~~~~l 311 (492)
...+++|||.+... +|.++++++
T Consensus 16 ~v~~LVDTGat~~~~l~~~~a~~l 39 (107)
T TIGR03698 16 EVRALVDTGFSGFLLVPPDIVNKL 39 (107)
T ss_pred EEEEEEECCCCeEEecCHHHHHHc
Confidence 35699999999886 999988774
No 59
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=39.65 E-value=29 Score=29.83 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=22.5
Q ss_pred EEEcCccccccCCCceEEEcCCCCceeccHHHHHHH
Q 011141 276 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (492)
Q Consensus 276 i~vg~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l 311 (492)
+.+||..+. |+||||+..+.++.+.++++
T Consensus 29 ~~ing~~vk-------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 29 CKINGVPVK-------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEETTEEEE-------EEEETT-SS-EEEHHHHHHT
T ss_pred EEECCEEEE-------EEEeCCCCccccCHHHHHHc
Confidence 567887664 99999999999999988874
No 60
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=37.57 E-value=37 Score=31.76 Aligned_cols=36 Identities=14% Similarity=0.273 Sum_probs=28.0
Q ss_pred ccceEEEeceEEEcCccccccCCCceEEEcCCCCceeccHHHHHHH
Q 011141 266 KGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (492)
Q Consensus 266 ~~~w~v~l~~i~vg~~~~~~~~~~~~aiiDTGtt~i~lP~~~~~~l 311 (492)
++++.++ ..|||+.+. .++|||.|.+.++.+..+.+
T Consensus 103 ~GHF~a~---~~VNGk~v~-------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 103 DGHFEAN---GRVNGKKVD-------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCcEEEE---EEECCEEEE-------EEEecCcceeecCHHHHHHh
Confidence 4555444 467887764 89999999999999988776
No 61
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=32.20 E-value=32 Score=29.48 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=19.0
Q ss_pred eEEEcCCCC-ceeccHHHHHHHH
Q 011141 291 AAIADSGTS-LLAGPTTIITQVN 312 (492)
Q Consensus 291 ~aiiDTGtt-~i~lP~~~~~~l~ 312 (492)
..++|||-+ ++.+|.++++++.
T Consensus 28 ~~LiDTGFtg~lvlp~~vaek~~ 50 (125)
T COG5550 28 DELIDTGFTGYLVLPPQVAEKLG 50 (125)
T ss_pred eeEEecCCceeEEeCHHHHHhcC
Confidence 358999999 9999999988874
No 62
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=30.77 E-value=53 Score=26.51 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=16.8
Q ss_pred CCccchHHHHHHHHHHHHHHHhhh
Q 011141 1 MGMVFKSITAGFFLCLLLFPVVFS 24 (492)
Q Consensus 1 ~~M~~~~~~~~l~~~~l~~~~~~~ 24 (492)
|+|.+...+++++++++++.+...
T Consensus 1 m~~~~~~~ll~~v~~l~~~pl~~~ 24 (91)
T TIGR01165 1 MSMKKTIWLLAAVAALVVLPLLIY 24 (91)
T ss_pred CCcchhHHHHHHHHHHHHHHHHhc
Confidence 899988877766666666655543
No 63
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=26.78 E-value=75 Score=26.35 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=39.4
Q ss_pred EEEEecCCC----ceEEEEEeCCCCCee-eeCCCCCCCccccCCCCCCCCCCCceeeCCceEEEEecCCe-eEeeEEEeE
Q 011141 92 GEIGIGTPP----QNFTVIFDTGSSNLW-VPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA-ISGFFSEDH 165 (492)
Q Consensus 92 ~~i~iGtP~----Q~~~v~lDTGSs~~W-V~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs-~~G~~~~D~ 165 (492)
+++.+..|. -++.+++|||.+..- ++...-. .-...+.. .....-++|. ..-....++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~~~a~-------~lgl~~~~---------~~~~~tA~G~~~~~~v~~~~ 65 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPPDIVN-------KLGLPELD---------QRRVYLADGREVLTDVAKAS 65 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCHHHHH-------HcCCCccc---------CcEEEecCCcEEEEEEEEEE
Confidence 577888873 267899999998664 4332110 00111111 1234456675 456677899
Q ss_pred EEECceee
Q 011141 166 VKIGDLVV 173 (492)
Q Consensus 166 v~~g~~~v 173 (492)
+.+++...
T Consensus 66 v~igg~~~ 73 (107)
T TIGR03698 66 IIINGLEI 73 (107)
T ss_pred EEECCEEE
Confidence 99998765
No 64
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=24.85 E-value=87 Score=26.32 Aligned_cols=35 Identities=14% Similarity=0.262 Sum_probs=30.7
Q ss_pred CcccCchhHHHHHHHHH---------HHhhhchHHHHHHHHHhh
Q 011141 384 HDAMCSTCEMAVVWMQN---------QLKQNQTQERILNYVNEL 418 (492)
Q Consensus 384 ~~~~c~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 418 (492)
+-+-|..|.-+..||++ .+..+.|.+++...++++
T Consensus 6 ~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~~~ 49 (113)
T cd03033 6 EKPGCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFGDL 49 (113)
T ss_pred ECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHHHc
Confidence 45779999999999985 778999999999999865
No 65
>COG4714 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=21.15 E-value=90 Score=29.70 Aligned_cols=27 Identities=22% Similarity=0.167 Sum_probs=21.5
Q ss_pred CCccchHHHHHHHHHHHHHHHhhhcCC
Q 011141 1 MGMVFKSITAGFFLCLLLFPVVFSTPN 27 (492)
Q Consensus 1 ~~M~~~~~~~~l~~~~l~~~~~~~~~~ 27 (492)
|+|+-|++.++.+..+|+|.+..+...
T Consensus 1 ma~~f~~~il~~l~A~L~c~ss~~v~~ 27 (303)
T COG4714 1 MAMGFRMKILIKLTALLLCGSSWHVNA 27 (303)
T ss_pred CCcchHHHHHHHHHHHHHhhHhhhhcC
Confidence 999999999988888888866655433
Done!