BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011142
(492 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 172 bits (437), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 141/496 (28%), Positives = 233/496 (46%), Gaps = 58/496 (11%)
Query: 4 QANQLHFVLFPFLAQGHMIPMIDIA-RLLAQRGVIITIVTT---PVNAARFNGILARAIE 59
++ H + P GH+IP+++ A RL+ G+ +T V P + A+ R +
Sbjct: 3 ESKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQ------RTVL 56
Query: 60 SGLQIKIVQFQLPCEEAGLPEGCENLDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRP 119
L I LP + ++ SL + T ++ V + F + P
Sbjct: 57 DSLPSSISSVFLPPVDLTDLSSSTRIESRISLTV-----TRSNPELRKVFDSFVEGGRLP 111
Query: 120 NCIISDMCLPYTAHIAGKFNIPRITFHGTCCFCLVCYNNL--FTXXXXXXXXXXXXXXXX 177
++ D+ +A +F++P F+ T L + +L
Sbjct: 112 TALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEPLML 171
Query: 178 P-CLP----DKIEFTTQQVDSSLGSRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEY 232
P C+P D ++ + D + + ++ A G++VN+F ELEP IK
Sbjct: 172 PGCVPVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAE-----GILVNTFFELEPNAIKAL 226
Query: 233 KKIRHDK--VWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSL 290
++ DK V+ +GP+ K+ + + + E +CLKWLD++ SV+Y GS
Sbjct: 227 QEPGLDKPPVYPVGPLVNIGKQEAKQTE--------ESECLKWLDNQPLGSVLYVSFGSG 278
Query: 291 CNLIPSQMRELGLGLEASNRPFIWVIRE----------GETSKELKKWVVEDGFEERIKG 340
L Q+ EL LGL S + F+WVIR S+ + GF ER K
Sbjct: 279 GTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKK 338
Query: 341 RGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQ 400
RG VI WAPQ +L+HPS GGFLTHCGWNST+E V +G+PL+ WPL+ +Q MN L+ +
Sbjct: 339 RGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSE 398
Query: 401 ILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMAN 460
++ ++ G++ L++R++V V+ LM EG+EG+ RN+ +L + A
Sbjct: 399 DIRAALRPRA------GDDG----LVRREEVARVVKGLM-EGEEGKGVRNKMKELKEAAC 447
Query: 461 MAVQEGGSSHLNVTLV 476
+++ G+S ++LV
Sbjct: 448 RVLKDDGTSTKALSLV 463
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 171 bits (433), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 130/498 (26%), Positives = 221/498 (44%), Gaps = 54/498 (10%)
Query: 9 HFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNAARFNGILARAIESGLQIKIVQ 68
H V+ P+ QGH+ P+ +A+LL RG IT V T N R + +R ++
Sbjct: 10 HVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRL--LKSRGPKAFDGFTDFN 67
Query: 69 FQLPCEEAGLPEGCENLDMVASLGLAFDFFTAADMLQEPVENFFAQLKPRPN-------- 120
F+ +P+G M ++ D T +++ + +L R N
Sbjct: 68 FE------SIPDGLT--PMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPV 119
Query: 121 -CIISDMCLPYTAHIAGKFNIPRI-TFHGTCCFCLVCYNNLFTXXXXXXXXXXXXXXXXP 178
C++SD C+ +T A +F +P + F + C L +
Sbjct: 120 TCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNG 179
Query: 179 CLPDKIEFTTQQVDSSLGSRFNVFQKK----------MGAAD--TGTYGVIVNSFEELEP 226
CL K+++ + L + + + AD +++N+F ELE
Sbjct: 180 CLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELES 239
Query: 227 AYIKEYKKIRHDKVWCIGPVSLSNKEYSDKAQRGNKAS---VDEHQCLKWLDSKAPKSVV 283
I ++ IGP+ K+ Q + S ++ +CL WL+SK P SVV
Sbjct: 240 DVINALSSTI-PSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVV 298
Query: 284 YACLGSLCNLIPSQMRELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGL 343
Y GS + P Q+ E GL + F+W+IR + F I RGL
Sbjct: 299 YVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIG--GSVIFSSEFTNEIADRGL 356
Query: 344 VIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILK 403
+ W PQ +L+HPSIGGFLTHCGWNST E + AG+P+L WP F DQ + + + +
Sbjct: 357 IA-SWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWE 415
Query: 404 IGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAV 463
IG+++ +KR+++ + +++ G +G++ + +A++L + A
Sbjct: 416 IGMEIDTN--------------VKREELAKLINEVI-AGDKGKKMKQKAMELKKKAEENT 460
Query: 464 QEGGSSHLNVTLVIQDIM 481
+ GG S++N+ VI+D++
Sbjct: 461 RPGGCSYMNLNKVIKDVL 478
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 149 bits (375), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 100/280 (35%), Positives = 144/280 (51%), Gaps = 31/280 (11%)
Query: 199 FNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKKIRHDKVWCIGPVSLSNKEYSDKAQ 258
F KMG V +NSF + P E + + +GP +L+ +
Sbjct: 202 FATMLHKMGLELPRANAVAINSFATIHPLIENELNS-KFKLLLNVGPFNLTTPQ------ 254
Query: 259 RGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMRELGLGLEASNRPFIWVIRE 318
+ DEH CL+WLD SVVY GS+ P ++ L LE PFIW R
Sbjct: 255 ---RKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFR- 310
Query: 319 GETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSA 378
G+ ++L K GF ER K +G ++ WAPQV IL H S+G FLTH GWNS +E +
Sbjct: 311 GDPKEKLPK-----GFLERTKTKGKIV-AWAPQVEILKHSSVGVFLTHSGWNSVLECIVG 364
Query: 379 GLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEEQKIGVLMKRDDVRNAVEKL 438
G+P+++ P FGDQ +N L +L+IG VGV++ GVL K + ++ A+E
Sbjct: 365 GVPMISRPFFGDQGLNTILTESVLEIG--VGVDN----------GVLTK-ESIKKALELT 411
Query: 439 MDEGKEGEERRNRAVKLGQMANMAVQEGGSSHLNVTLVIQ 478
M K G R+ + VKL + A AV++ G+S ++ T +IQ
Sbjct: 412 MSSEKGGIMRQ-KIVKLKESAFKAVEQNGTSAMDFTTLIQ 450
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 157/282 (55%), Gaps = 46/282 (16%)
Query: 213 TYGVIVNSFEELEPAYIKEYKKIRHDK----VWCIGPVSLSNKEYSDKAQRGNKASVDEH 268
T G+IVN+F +LE + I HD+ ++ +GP+ K Q K +H
Sbjct: 212 TKGIIVNTFSDLEQSSIDALYD--HDEKIPPIYAVGPL------LDLKGQPNPKLDQAQH 263
Query: 269 QC-LKWLDSKAPKSVVYACLGSL-CNLIPSQMRELGLGLEASNRPFIWVIREGETSKELK 326
LKWLD + KSVV+ C GS+ + PSQ+RE+ LGL+ S F+W S +
Sbjct: 264 DLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW-------SNSAE 316
Query: 327 KWVVEDGFEE--RIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLT 384
K V +GF E ++G+G+ I GWAPQV +L+H +IGGF++HCGWNS +E + G+P+LT
Sbjct: 317 KKVFPEGFLEWMELEGKGM-ICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILT 375
Query: 385 WPLFGDQFMNEKLVVQILKIGVKVGVE----SPMIWGEEQKIGV--LMKRDDVRNAVEKL 438
WP++ +Q +N +V+ +G+ + V+ S ++ EE + G+ LM +D + V K
Sbjct: 376 WPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSI---VHKK 432
Query: 439 MDEGKEGEERRNRAVKLGQMANMAVQEGGSSHLNVTLVIQDI 480
+ E KE M+ AV +GGSS ++V +I DI
Sbjct: 433 VQEMKE-------------MSRNAVVDGGSSLISVGKLIDDI 461
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 157/282 (55%), Gaps = 46/282 (16%)
Query: 213 TYGVIVNSFEELEPAYIKEYKKIRHDK----VWCIGPVSLSNKEYSDKAQRGNKASVDEH 268
T G+IVN+F +LE + I HD+ ++ +GP+ K Q K +H
Sbjct: 212 TKGIIVNTFSDLEQSSIDALYD--HDEKIPPIYAVGPL------LDLKGQPNPKLDQAQH 263
Query: 269 QC-LKWLDSKAPKSVVYACLGSL-CNLIPSQMRELGLGLEASNRPFIWVIREGETSKELK 326
LKWLD + KSVV+ C GS+ + PSQ+RE+ LGL+ S F+W S +
Sbjct: 264 DLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW-------SNSAE 316
Query: 327 KWVVEDGFEE--RIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLT 384
K V +GF E ++G+G+ I GWAPQV +L+H +IGGF++HCGWNS +E + G+P+LT
Sbjct: 317 KKVFPEGFLEWMELEGKGM-ICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILT 375
Query: 385 WPLFGDQFMNEKLVVQILKIGVKVGVE----SPMIWGEEQKIGV--LMKRDDVRNAVEKL 438
WP++ +Q +N +V+ +G+ + V+ S ++ EE + G+ LM +D + V K
Sbjct: 376 WPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSI---VHKK 432
Query: 439 MDEGKEGEERRNRAVKLGQMANMAVQEGGSSHLNVTLVIQDI 480
+ E KE M+ AV +GGSS ++V +I DI
Sbjct: 433 VQEMKE-------------MSRNAVVDGGSSLISVGKLIDDI 461
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 141 bits (356), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 93/303 (30%), Positives = 150/303 (49%), Gaps = 34/303 (11%)
Query: 183 KIEFTTQQ---VDSSLGSRFNVFQKKMGAADTGTYGVIVNSFEELEPAYIKEYKKIRHDK 239
K+ F Q V +L S F+ +MG V +NSFEEL+ + + K +
Sbjct: 181 KVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKS-KLKT 239
Query: 240 VWCIGPVSLSNKEYSDKAQRGNKASVDEHQCLKWLDSKAPKSVVYACLGSLCNLIPSQMR 299
IGP +L G CL+WL + P SVVY G++ P+++
Sbjct: 240 YLNIGPFNLITPPPVVPNTTG---------CLQWLKERKPTSVVYISFGTVTTPPPAEVV 290
Query: 300 ELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQVLILSHPS 359
L LEAS PFIW +R+ + + +GF E+ +G G+V+ WAPQ +L+H +
Sbjct: 291 ALSEALEASRVPFIWSLRDK------ARVHLPEGFLEKTRGYGMVV-PWAPQAEVLAHEA 343
Query: 360 IGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVKVGVESPMIWGEE 419
+G F+THCGWNS E V+ G+PL+ P FGDQ +N ++V +L+IGV++
Sbjct: 344 VGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIE---------- 393
Query: 420 QKIGVLMKRDDVRNAVEKLMDEGKEGEERRNRAVKLGQMANMAVQEGGSSHLNVTLVIQD 479
G + + + + ++++ + K G++ R L + A+ AV GSS N ++
Sbjct: 394 ---GGVFTKSGLMSCFDQILSQEK-GKKLRENLRALRETADRAVGPKGSSTENFITLVDL 449
Query: 480 IMK 482
+ K
Sbjct: 450 VSK 452
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%)
Query: 332 DGFEERIKGRGLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQ 391
DG + G ++ W PQ +L HP F+TH G N E + G+P + PLF DQ
Sbjct: 59 DGNKPDTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQ 118
Query: 392 FMN 394
N
Sbjct: 119 PDN 121
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 348 WAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQI 401
W PQ+ IL+ S F+TH G ST+E +S +P++ P +Q MN + +V++
Sbjct: 312 WVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVEL 363
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 348 WAPQVLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMNEKLVVQILKIGVK 407
W PQ+ IL + F+TH G + EG++ P++ P DQF N + +Q L + K
Sbjct: 290 WVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADM-LQGLGVARK 346
Query: 408 VGVE 411
+ E
Sbjct: 347 LATE 350
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 66/161 (40%), Gaps = 31/161 (19%)
Query: 243 IGPVSLSNKEYSDKAQRGNKASV---DEHQCLKWLDSK-APKSVVYACLGSLCNLIPSQM 298
I P SL E+ + +R V ++ WL S+ + +VY LG+ +
Sbjct: 201 IFPPSLQEPEFRARPRRHELRPVPFAEQGDLPAWLSSRDTARPLVYLTLGTSSGGTVEVL 260
Query: 299 REL--GL-GLEA----SNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWGWAPQ 351
R GL GL+A ++ P + V GE ++ + W PQ
Sbjct: 261 RAAIDGLAGLDADVLVASGPSLDVSGLGEVPANVR------------------LESWVPQ 302
Query: 352 VLILSHPSIGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQF 392
+L H + + H G +T+ + AG+P L++P GD F
Sbjct: 303 AALLPHVDL--VVHHGGSGTTLGALGAGVPQLSFPWAGDSF 341
>pdb|3IMH|A Chain A, Crystal Structure Of Galactose 1-Epimerase From
Lactobacillus Acidophilus Ncfm
pdb|3IMH|B Chain B, Crystal Structure Of Galactose 1-Epimerase From
Lactobacillus Acidophilus Ncfm
Length = 338
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 41 VTTPVNAARFNGILARAIESGLQIKIVQFQLPCEEAGLPEGCENLDMVASLGLAFDF 97
+ PVN FN + RA + LQ+ + LP +EAGLP+ M G AFDF
Sbjct: 169 IFNPVNHTYFN-LGERAEDLNLQMN-ADYYLPVDEAGLPDRG----MAEVAGTAFDF 219
>pdb|1V4L|B Chain B, Crystal Structure Of A Platelet Agglutination Factor
Isolated From The Venom Of Taiwan Habu (Trimeresurus
Mucrosquamatus)
pdb|1V4L|D Chain D, Crystal Structure Of A Platelet Agglutination Factor
Isolated From The Venom Of Taiwan Habu (Trimeresurus
Mucrosquamatus)
pdb|1V4L|F Chain F, Crystal Structure Of A Platelet Agglutination Factor
Isolated From The Venom Of Taiwan Habu (Trimeresurus
Mucrosquamatus)
Length = 125
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 19/88 (21%)
Query: 199 FNVFQKKMGAADT---------GTYGVIVNSFEELEPAYIKEYKKIRHDKVWCIGPVSLS 249
+ VFQ+KM D G++ V +S EE++ K ++HD VW + LS
Sbjct: 16 YQVFQQKMNWEDAEKFCTQQHRGSHLVSFHSSEEVDFVVSKTSPILKHDFVW----MGLS 71
Query: 250 N------KEYSDKAQRGNKASVDEHQCL 271
N KE+SD + KA + C+
Sbjct: 72 NVWNECAKEWSDGTKLDYKAWSGQSDCI 99
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 4 QANQLHFVLFPFLAQGHMIPMIDIARLLAQRGVIITIVTTPVNA 47
Q H + GH+ P + + LA+RG IT VTTP+ A
Sbjct: 1 HXRQRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFA 44
>pdb|3OBY|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Pelota Reveals
Inter- Domain Structural Plasticity
pdb|3OBY|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus Pelota Reveals
Inter- Domain Structural Plasticity
Length = 352
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 295 PSQMRELGLGLEASNRPFI--WVIREG-ETSKELKKWVVEDGFEERI-KGRGL 343
P Q+ L +E SNRP I I EG + L++W VE+ FEER+ G+G+
Sbjct: 113 PEQLERLRRAVEDSNRPEIVMLTIEEGYAVAGVLRQWGVEEIFEERMGYGKGM 165
>pdb|2P6P|A Chain A, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
pdb|2P6P|B Chain B, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
Length = 384
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 322 SKELKKWVVE------DGFEERIKGR-GLVIWGWAPQVLILSHPSIGGFLTHCGWNSTIE 374
+K+L +W VE D E ++ GW P L + P+ + H G ST+
Sbjct: 237 AKDLVRWDVELIVAAPDTVAEALRAEVPQARVGWTP--LDVVAPTCDLLVHHAGGVSTLT 294
Query: 375 GVSAGLPLLTWP 386
G+SAG+P L P
Sbjct: 295 GLSAGVPQLLIP 306
>pdb|1C3A|B Chain B, Crystal Structure Of Flavocetin-A From The Habu Snake
Venom, A Novel Cyclic Tetramer Of C-Type Lectin-Like
Heterodimers
Length = 125
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 19/88 (21%)
Query: 199 FNVFQKKMGAADT---------GTYGVIVNSFEELEPAYIKEYKKIRHDKVWCIGPVSLS 249
+ VFQ+KM D G++ V +S EE++ K + +++D VW + LS
Sbjct: 16 YQVFQQKMNWEDAEKFCTQQHKGSHLVSFHSSEEVDFVTSKTFPILKYDFVW----IGLS 71
Query: 250 N------KEYSDKAQRGNKASVDEHQCL 271
N KE+SD + KA C+
Sbjct: 72 NVWNECTKEWSDGTKLDYKAWSGGSDCI 99
>pdb|2ZAI|A Chain A, Crystal Structure Of The Soluble Domain Of Stt3 From P.
Furiosus
pdb|2ZAI|B Chain B, Crystal Structure Of The Soluble Domain Of Stt3 From P.
Furiosus
pdb|2ZAI|C Chain C, Crystal Structure Of The Soluble Domain Of Stt3 From P.
Furiosus
pdb|2ZAI|D Chain D, Crystal Structure Of The Soluble Domain Of Stt3 From P.
Furiosus
Length = 497
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 360 IGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMN--EKLVVQILKIGVKVGV 410
+GG +T +N G A LL P +G++++N K++V + VKV V
Sbjct: 111 LGGAITRREYNGDESGRGAVTTLLPLPRYGEKYVNLYAKVIVDVSNSSVKVTV 163
>pdb|2ZAG|A Chain A, Crystal Structure Of The Semet-Substituted Soluble Domain
Of Stt3 From P. Furiosus
pdb|2ZAG|B Chain B, Crystal Structure Of The Semet-Substituted Soluble Domain
Of Stt3 From P. Furiosus
pdb|2ZAG|C Chain C, Crystal Structure Of The Semet-Substituted Soluble Domain
Of Stt3 From P. Furiosus
pdb|2ZAG|D Chain D, Crystal Structure Of The Semet-Substituted Soluble Domain
Of Stt3 From P. Furiosus
Length = 497
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 360 IGGFLTHCGWNSTIEGVSAGLPLLTWPLFGDQFMN--EKLVVQILKIGVKVGV 410
+GG +T +N G A LL P +G++++N K++V + VKV V
Sbjct: 111 LGGAITRREYNGDESGRGAVTTLLPLPRYGEKYVNLYAKVIVDVSNSSVKVTV 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,036,386
Number of Sequences: 62578
Number of extensions: 583892
Number of successful extensions: 1281
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1250
Number of HSP's gapped (non-prelim): 24
length of query: 492
length of database: 14,973,337
effective HSP length: 103
effective length of query: 389
effective length of database: 8,527,803
effective search space: 3317315367
effective search space used: 3317315367
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)